# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /home/yduan/work_file/lncRNAdb/methods_assement/prediction_results/random5k/mitrans_tucp/wd/mitrans_tucp_5000.p.fa # target HMM database: /home/yduan/database/Pfam/Pfam-A.hmm # output directed to file: /home/yduan/work_file/lncRNAdb/methods_assement/prediction_results/random5k/mitrans_tucp/hmmscan.outm # per-seq hits tabular output: /home/yduan/work_file/lncRNAdb/methods_assement/prediction_results/random5k/mitrans_tucp/hmmscan.t.out # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: T235954_1 [L=6981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.39s 00:00:02.29 Elapsed: 00:00:00.82 # Mc/sec: 24355.43 // Query: T235954_2 [L=6981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.43s 00:00:02.51 Elapsed: 00:00:00.79 # Mc/sec: 25280.32 // Query: T235954_3 [L=6980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.43s 00:00:02.41 Elapsed: 00:00:00.85 # Mc/sec: 23492.46 // Query: T316356_1 [L=4610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.39s 00:00:01.84 Elapsed: 00:00:00.76 # Mc/sec: 17353.19 // Query: T316356_2 [L=4610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.38s 00:00:01.93 Elapsed: 00:00:00.77 # Mc/sec: 17127.83 // Query: T316356_3 [L=4609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.46s 00:00:02.14 Elapsed: 00:00:00.79 # Mc/sec: 16690.59 // Query: T183509_1 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 2514.76 // Query: T183509_2 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.72 # Mc/sec: 2165.49 // Query: T183509_3 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 2555.99 // Query: T131335_1 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 1910.30 // Query: T131335_2 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 2114.97 // Query: T131335_3 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.57 # Mc/sec: 2042.04 // Query: T296733_1 [L=440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.63 # Mc/sec: 1998.04 // Query: T296733_2 [L=439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.59 # Mc/sec: 2128.65 // Query: T296733_3 [L=439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 11.3 0.5 0.38 10.3 0.5 1.4 1 VIR_N Virilizer, N-terminal Domain annotation for each model (and alignments): >> VIR_N Virilizer, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.5 2.3e-05 0.38 131 165 .. 261 304 .. 251 321 .. 0.86 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 2.3e-05 VIR_N 131 rasipPppPapP.........elekedqynasvprpeprePrtp 165 r s pPppP+pP + +e ++ s p +pr P + T296733_3 261 RGSLPPPPPPPPaslrapssvTWTREHLLATSAPSRAPRRPLST 304 568899999999****************************9877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.68 # Mc/sec: 1846.92 // Query: T182901_1 [L=5815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.46s 00:00:02.29 Elapsed: 00:00:00.81 # Mc/sec: 20537.93 // Query: T182901_2 [L=5814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.43s 00:00:02.22 Elapsed: 00:00:00.82 # Mc/sec: 20283.98 // Query: T182901_3 [L=5814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.43s 00:00:02.34 Elapsed: 00:00:00.87 # Mc/sec: 19118.24 // Query: T379040_1 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 28.6 0.9 2.4e-06 27.8 0.9 1.4 1 Harakiri Activator of apoptosis harakiri Domain annotation for each model (and alignments): >> Harakiri Activator of apoptosis harakiri # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.9 1.5e-10 2.4e-06 54 91 .. 497 532 .. 478 533 .. 0.75 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 1.5e-10 Harakiri 54 rsrd.plpallpalrarwpwlcaaaqvaalaawllgrrs 91 sr p p+ ++ wpwl aa q+ alaawllg +s T379040_1 497 ASRGsPTPSEHRTY---WPWLYAAPQLVALAAWLLGSQS 532 34445888888888...*******************876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.71 # Mc/sec: 2163.75 // Query: T379040_2 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-05 25.0 9.5 3.4e-05 24.1 9.5 1.5 1 Harakiri Activator of apoptosis harakiri Domain annotation for each model (and alignments): >> Harakiri Activator of apoptosis harakiri # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 9.5 2.1e-09 3.4e-05 1 77 [. 455 530 .. 455 534 .. 0.69 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 2.1e-09 Harakiri 1 mcpcplhrgrgppavcacsdarlglrsaaaqltalrlkalgdelhrramrrrarsrd.plpallpalrarwpwlcaaa 77 m pcplhrg a+ ac ++rlglrsa+aqlt++ a +h+ a r a + l + p rw c aa T379040_2 455 MLPCPLHRGHSSLALYACLAGRLGLRSATAQLTTAPKGAA--PVHHVAAPRPASTVPtGLGCTRPHSWWRWRPGCLAA 530 88*******************************9876553..456655544443332244444555444454455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 2327.68 // Query: T379040_3 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.67 # Mc/sec: 2288.66 // Query: T374162_1 [L=1373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 5455.44 // Query: T374162_2 [L=1372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.71 # Mc/sec: 5528.25 // Query: T374162_3 [L=1372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.75 # Mc/sec: 5233.41 // Query: T281176_1 [L=7064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.38s 00:00:02.29 Elapsed: 00:00:00.76 # Mc/sec: 26590.66 // Query: T281176_2 [L=7064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 751 (0.0460567); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.91u 0.50s 00:00:03.41 Elapsed: 00:00:01.06 # Mc/sec: 19065.00 // Query: T281176_3 [L=7064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.46s 00:00:02.68 Elapsed: 00:00:00.85 # Mc/sec: 23775.18 // Query: T003981_1 [L=2164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:00.76 # Mc/sec: 8145.84 // Query: T003981_2 [L=2164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.79 # Mc/sec: 7836.50 // Query: T003981_3 [L=2164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 10148.91 // Query: T125915_1 [L=1865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 7963.36 // Query: T125915_2 [L=1865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 7963.36 // Query: T125915_3 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.73 # Mc/sec: 7304.91 // Query: T202705_1 [L=2626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-37 127.2 0.2 7.6e-37 126.5 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.5 0.2 4.7e-41 7.6e-37 1 168 [. 1757 1921 .. 1757 1922 .. 0.87 Alignments for each domain: == domain 1 score: 126.5 bits; conditional E-value: 4.7e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202705_1 1757 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1850 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202705_1 1851 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1921 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.72 # Mc/sec: 10434.08 // Query: T202705_2 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 10287.23 // Query: T202705_3 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-10 39.4 0.3 8.7e-10 38.6 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.6 0.3 5.3e-14 8.7e-10 33 96 .. 2155 2219 .. 2150 2225 .. 0.95 Alignments for each domain: == domain 1 score: 38.6 bits; conditional E-value: 5.3e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202705_3 2155 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 2219 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 10883.59 // Query: T018815_1 [L=1615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-30 104.6 13.6 4.9e-30 104.6 13.6 4.3 4 CCDC144C CCDC144C protein coiled-coil region 0.0047 16.8 1.1 0.0047 16.8 1.1 3.1 4 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 5.9 0.53 4.3e+03 186 237 .. 643 694 .. 634 751 .. 0.61 2 ! 12.5 1.2 6.6e-06 0.054 96 143 .. 904 949 .. 891 950 .. 0.87 3 ! 104.6 13.6 6e-34 4.9e-30 184 304 .. 988 1099 .. 977 1100 .. 0.94 4 ? -5.4 20.5 1.9 1.5e+04 121 231 .. 1147 1261 .. 1118 1264 .. 0.78 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 0.53 CCDC144C 186 rdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 r q+ + l ++++e+e+ +++ +kq ++e +se + L + + T018815_1 643 RKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 694 5555555555555555555555555555555555555555555555554443 PP == domain 2 score: 12.5 bits; conditional E-value: 6.6e-06 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018815_1 904 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 949 689**********************9554.57..89*********9976 PP == domain 3 score: 104.6 bits; conditional E-value: 6e-34 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk T018815_1 988 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNK 1076 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhl.kerlyqyekekaer 304 +L+nec+ ke+l++ye+ekaer T018815_1 1077 KLMNECD-H*KESLFRYEREKAER 1099 ******7.55589**********8 PP == domain 4 score: -5.4 bits; conditional E-value: 1.9 CCDC144C 121 fqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yig 214 + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ +++ T018815_1 1147 VESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQ 1244 44555778888999999999999999999999844458899999999999999888777777889999999999999999977666666666552677 PP CCDC144C 215 kqesleerlsqlqsenl 231 +q ++ +l ql+++ + T018815_1 1245 EQAQYKKQLEQLNKDII 1261 88899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.7 1.7 1.4e+04 14 56 .. 647 690 .. 642 719 .. 0.63 2 ! 16.8 1.1 5.8e-07 0.0047 24 94 .. 990 1059 .. 986 1060 .. 0.95 3 ? -3.4 0.1 1 8.3e+03 61 80 .. 1103 1122 .. 1099 1129 .. 0.73 4 ? 0.1 11.0 0.086 7e+02 9 96 .. 1172 1257 .. 1141 1263 .. 0.82 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 1.7 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvk.dankaird 56 ++l+ + l + le+++e ++ +++ +++e + ++++ i++ T018815_1 647 QTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNtNKSEKIQL 690 55666666667777777777776666444444443344444444 PP == domain 2 score: 16.8 bits; conditional E-value: 5.8e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018815_1 990 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 1059 68999********************************************************76.9999986 PP == domain 3 score: -3.4 bits; conditional E-value: 1 XXXXXXXXXXXXXXXXXXXX CS Laminin_II 61 vkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018815_1 1103 VRQLQQEAADSLKKLTMLES 1122 78888888888888777765 PP == domain 4 score: 0.1 bits; conditional E-value: 0.086 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018815_1 1172 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 1257 45555556677889999999999999999999999999999999999999999999999999999999999998884..466666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1681 (0.103091); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:00.65 # Mc/sec: 7108.06 // Query: T018815_2 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 6596.26 // Query: T018815_3 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-29 103.3 16.4 1.2e-29 103.3 16.4 2.2 2 CCDC144C CCDC144C protein coiled-coil region 2.8e-16 59.7 6.5 2.8e-16 59.7 6.5 3.3 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.3 16.4 1.4e-33 1.2e-29 1 96 [. 809 904 .. 809 905 .. 0.99 2 ? -0.6 1.1 0.062 5.1e+02 74 108 .. 1273 1307 .. 1259 1322 .. 0.71 Alignments for each domain: == domain 1 score: 103.3 bits; conditional E-value: 1.4e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018815_3 809 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 904 9*********************************************************************************************95 PP == domain 2 score: -0.6 bits; conditional E-value: 0.062 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018815_3 1273 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 1307 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.1 0.15 1.2e+03 2 27 .. 767 792 .. 765 800 .. 0.85 2 ? -5.1 6.4 2 1.6e+04 30 87 .. 831 887 .. 813 902 .. 0.57 3 ! 59.7 6.5 3.4e-20 2.8e-16 3 69 .. 1266 1331 .. 1265 1333 .. 0.93 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.15 DUF3496 2 sqmElrikdLeselskmKtsqedsnk 27 +q+E +i++Le++ +++++ ++ nk T018815_3 767 KQLEPTIQSLEMKPKTTRNTPNQINK 792 58999999999999999998888766 PP == domain 2 score: -5.1 bits; conditional E-value: 2 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018815_3 831 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 887 555.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 59.7 bits; conditional E-value: 3.4e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018815_3 1266 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1331 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 871 (0.0534159); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.50 # Mc/sec: 9234.76 // Query: T098465_1 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 3609.52 // Query: T098465_2 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-08 32.8 0.0 7.5e-08 32.0 0.0 1.4 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 0.0 4.6e-12 7.5e-08 5 94 .. 199 288 .. 195 292 .. 0.94 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 4.6e-12 BEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT- CS dUTPase 5 iptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgd 94 +p +++ sAg+++ ++ +++pg+t+++p++ ++ lp g+ +l+l S a+kg++v+ g d dy e+++ l n +k++ ++gd T098465_2 199 LPVPATLHSAGLEVLVTAGRMLPPGDTTTIPLNWKLRLPPGHFGLLLSLSQQAKKGVTVLAGMTDPDYHDEISLLLHNGGKEEYAWNTGD 288 67789999*************************************************************************998888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 3528.36 // Query: T098465_3 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 3256.94 // Query: T294868_1 [L=670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 3686.07 // Query: T294868_2 [L=670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3911.75 // Query: T294868_3 [L=670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 639 (0.039188); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3422.78 // Query: T277354_1 [L=5880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.41s 00:00:02.38 Elapsed: 00:00:00.73 # Mc/sec: 23043.40 // Query: T277354_2 [L=5880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 855 (0.0524347); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.27u 0.46s 00:00:02.73 Elapsed: 00:00:00.78 # Mc/sec: 21566.26 // Query: T277354_3 [L=5879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 722 (0.0442782); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.45s 00:00:02.65 Elapsed: 00:00:00.81 # Mc/sec: 20763.97 // Query: T351101_1 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.64 # Mc/sec: 9981.61 // Query: T351101_2 [L=2232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.045 13.5 0.1 0.094 12.5 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 5.7e-06 0.094 15 43 .. 1315 1347 .. 1311 1354 .. 0.80 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5.7e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351101_2 1315 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1347 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 8628.88 // Query: T351101_3 [L=2232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-21 74.4 7.1 1.4e-20 72.8 4.2 2.8 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.058 13.5 0.0 0.15 12.1 0.0 1.7 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 0.045 3.7e+02 25 38 .. 1125 1138 .. 1121 1140 .. 0.80 2 ! 72.8 4.2 1.7e-24 1.4e-20 9 79 .. 1310 1379 .. 1290 1380 .. 0.86 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.045 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351101_3 1125 EKLSKNAMLTIVWS 1138 45569********8 PP == domain 2 score: 72.8 bits; conditional E-value: 1.7e-24 Transposase_1 9 aqWldkgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 + g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351101_3 1310 S-----GWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1379 4.....556666666666666666*************************************************98 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 1.9e-05 0.15 5 23 .. 2157 2175 .. 2154 2181 .. 0.86 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.9e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351101_3 2157 NLVCQVFPREYLANHNCGR 2175 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 8513.83 // Query: T227993_1 [L=3935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.41s 00:00:01.89 Elapsed: 00:00:00.80 # Mc/sec: 14071.71 // Query: T227993_2 [L=3935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:00.79 # Mc/sec: 14249.83 // Query: T227993_3 [L=3935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.73 # Mc/sec: 15421.05 // Query: T164576_1 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.40s 00:00:01.70 Elapsed: 00:00:00.78 # Mc/sec: 9987.23 // Query: T164576_2 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.66 # Mc/sec: 11798.76 // Query: T164576_3 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 7.7 7.3 4.8 7.0 7.3 1.3 1 Mucin Mucin-like glycoprotein Domain annotation for each model (and alignments): >> Mucin Mucin-like glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 7.3 0.0003 4.8 40 118 .. 432 508 .. 384 513 .. 0.47 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0003 Mucin 40 egqskltttttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPttttt..rapsrlrevdG 118 +++ + +t t + + t + t t+t t+t + t t t +a ++a + ++aP+ + + s+lr+ d T164576_3 432 HTHTQAHTQMHTHRHMHAH----TYTHTRHTHTNAHTNTEARTHTEHTHRHAQTQAPAHSQAPAHSWIhpASASSLRRSDL 508 1222222222223333333....4444444444444444444444444444444444577777765430034567777664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.72 # Mc/sec: 10815.53 // Query: T064311_1 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 1984.12 // Query: T064311_2 [L=429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 1917.65 // Query: T064311_3 [L=429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 1888.15 // Query: T353293_1 [L=2585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.70 # Mc/sec: 10564.64 // Query: T353293_2 [L=2585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 10717.75 // Query: T353293_3 [L=2585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 11.7 258.1 1.8 8.4 1.4 37.7 39 Toxin_16 Janus-atracotoxin Domain annotation for each model (and alignments): >> Toxin_16 Janus-atracotoxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 4.3 0.3 4.9e+03 13 19 .. 712 718 .. 707 720 .. 0.84 2 ? 7.2 0.6 0.00025 4.1 12 31 .. 908 928 .. 904 931 .. 0.89 3 ? 3.0 0.8 0.0054 88 13 31 .. 928 947 .. 927 952 .. 0.83 4 ? 8.4 1.4 0.00011 1.8 12 31 .. 965 985 .. 963 986 .. 0.89 5 ? -0.6 6.9 0.07 1.1e+03 11 31 .. 983 1004 .. 981 1015 .. 0.84 6 ? 3.2 0.4 0.0047 77 12 31 .. 1003 1023 .. 1001 1024 .. 0.87 7 ? 7.7 0.9 0.00018 2.9 12 31 .. 1022 1042 .. 1019 1049 .. 0.88 8 ? 3.2 0.6 0.0047 77 3 31 .. 1033 1061 .. 1031 1062 .. 0.79 9 ? 7.8 0.5 0.00016 2.7 12 31 .. 1060 1080 .. 1057 1081 .. 0.90 10 ? 7.5 0.6 0.00021 3.4 12 31 .. 1079 1099 .. 1077 1101 .. 0.89 11 ? 3.8 0.7 0.0031 50 16 31 .. 1102 1118 .. 1097 1119 .. 0.86 12 ? 4.3 1.5 0.0021 35 13 31 .. 1118 1137 .. 1116 1138 .. 0.85 13 ? 7.1 0.8 0.00028 4.6 12 31 .. 1136 1156 .. 1135 1158 .. 0.89 14 ? 3.2 0.2 0.0045 73 17 31 .. 1160 1175 .. 1155 1176 .. 0.88 15 ? 7.2 0.7 0.00025 4.2 12 31 .. 1174 1194 .. 1173 1195 .. 0.89 16 ? 4.9 1.3 0.0013 22 12 29 .. 1193 1211 .. 1192 1213 .. 0.86 17 ? 5.1 0.6 0.0012 19 7 31 .. 1208 1232 .. 1202 1233 .. 0.73 18 ? 6.5 1.5 0.00042 6.9 12 31 .. 1231 1251 .. 1229 1255 .. 0.88 19 ? 4.2 0.7 0.0023 38 16 31 .. 1254 1270 .. 1249 1271 .. 0.85 20 ? 6.4 1.6 0.00045 7.3 12 31 .. 1269 1289 .. 1268 1291 .. 0.89 21 ? 5.7 1.4 0.00074 12 13 31 .. 1289 1308 .. 1287 1309 .. 0.87 22 ? 7.2 1.1 0.00026 4.2 12 31 .. 1307 1327 .. 1306 1329 .. 0.89 23 ? 6.5 1.3 0.00042 6.8 12 31 .. 1326 1346 .. 1325 1347 .. 0.89 24 ? 5.8 1.3 0.00069 11 13 31 .. 1346 1365 .. 1344 1366 .. 0.87 25 ? 7.3 0.9 0.00025 4 12 31 .. 1364 1384 .. 1363 1385 .. 0.89 26 ? 5.8 1.4 0.00072 12 13 31 .. 1384 1403 .. 1382 1404 .. 0.87 27 ? 6.1 1.8 0.00058 9.5 12 31 .. 1402 1422 .. 1401 1424 .. 0.89 28 ? 4.4 3.0 0.002 32 13 31 .. 1422 1441 .. 1420 1445 .. 0.87 29 ? 3.4 0.5 0.0041 66 12 31 .. 1440 1460 .. 1439 1461 .. 0.84 30 ? 7.1 0.7 0.00029 4.7 12 31 .. 1459 1479 .. 1456 1480 .. 0.89 31 ? 7.5 0.7 0.0002 3.3 12 31 .. 1478 1498 .. 1477 1499 .. 0.89 32 ? 4.6 1.3 0.0017 28 12 31 .. 1497 1517 .. 1496 1518 .. 0.89 33 ? 7.3 0.7 0.00025 4 12 31 .. 1516 1536 .. 1515 1537 .. 0.89 34 ? 6.4 1.3 0.00047 7.7 12 31 .. 1535 1555 .. 1534 1557 .. 0.89 35 ? 2.2 0.8 0.0097 1.6e+02 12 31 .. 1554 1574 .. 1553 1575 .. 0.85 36 ? 6.7 2.1 0.00038 6.2 12 31 .. 1573 1593 .. 1563 1594 .. 0.84 37 ? 5.8 2.3 0.00069 11 12 31 .. 1592 1612 .. 1591 1617 .. 0.89 38 ? -4.5 2.4 1 1.6e+04 13 19 .. 1624 1630 .. 1613 1635 .. 0.62 39 ? -0.1 3.3 0.048 7.8e+02 12 30 .. 2254 2272 .. 2251 2276 .. 0.82 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.3 Toxin_16 13 CCPCCPG 19 CCPC G T353293_3 712 CCPCATG 718 ****877 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00025 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 908 ASVPQCPGhTSCQITERDGAS 928 67899***99******99987 PP == domain 3 score: 3.0 bits; conditional E-value: 0.0054 Toxin_16 13 CCPCCP.GtsCkapesnGvs 31 P CP tsC+ e +G s T353293_3 928 SAPQCPeHTSCQITERDGAS 947 56889945*******99987 PP == domain 4 score: 8.4 bits; conditional E-value: 0.00011 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e++G s T353293_3 965 ASPPLCPGhTSCQITEPDGAS 985 55699***99*********87 PP == domain 5 score: -0.6 bits; conditional E-value: 0.07 Toxin_16 11 AACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ +G s T353293_3 983 GASAPLCPGhTSCQITQRDGAS 1004 5789*****99***88887776 PP == domain 6 score: 3.2 bits; conditional E-value: 0.0047 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG t C+ e +G s T353293_3 1003 ASTPQCPGhTYCQITERDGAS 1023 67899***889***9*99987 PP == domain 7 score: 7.7 bits; conditional E-value: 0.00018 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1022 ASAPLCPGhTSCQITERDGAS 1042 6789****99*******9987 PP == domain 8 score: 3.2 bits; conditional E-value: 0.0047 Toxin_16 3 CtGADRPCAACCPCCPGtsCkapesnGvs 31 C +R A C tsC+ e +G s T353293_3 1033 CQITERDGASASLCSGHTSCQITEKDGAS 1061 55566777777888888*****9999987 PP == domain 9 score: 7.8 bits; conditional E-value: 0.00016 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1060 ASAPLCPGhTSCQITEKDGAS 1080 6789****99*******9987 PP == domain 10 score: 7.5 bits; conditional E-value: 0.00021 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1079 ASAPQCPGhTSCQITEKDGAS 1099 67899***99*******9987 PP == domain 11 score: 3.8 bits; conditional E-value: 0.0031 Toxin_16 16 CCPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353293_3 1102 LCPGhTSCQITEKDGAS 1118 599989******99987 PP == domain 12 score: 4.3 bits; conditional E-value: 0.0021 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e G s T353293_3 1118 SPPQCPGhTSCQITERYGAS 1137 5699***99***99998876 PP == domain 13 score: 7.1 bits; conditional E-value: 0.00028 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1136 ASTPQCPGhTSCQITEKDGAS 1156 66899***99*******9987 PP == domain 14 score: 3.2 bits; conditional E-value: 0.0045 Toxin_16 17 CPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353293_3 1160 CPGhTSCQIRERDGAS 1175 99989******99987 PP == domain 15 score: 7.2 bits; conditional E-value: 0.00025 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1174 ASAPLCPGhTSCQITERDGAS 1194 6789****99******99987 PP == domain 16 score: 4.9 bits; conditional E-value: 0.0013 Toxin_16 12 ACCPCCPG.tsCkapesnG 29 A P CPG tsC+ e +G T353293_3 1193 ASAPQCPGhTSCQITERDG 1211 67899***99***999888 PP == domain 17 score: 5.1 bits; conditional E-value: 0.0012 Toxin_16 7 DRPCAACCPCCP.GtsCkapesnGvs 31 +R AA P CP tsC+ e +G s T353293_3 1208 ERDGAA-APLCPrHTSCQITERDGAS 1232 565555.5778746*******99987 PP == domain 18 score: 6.5 bits; conditional E-value: 0.00042 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1231 ASAPQCPGhTSCQITERDGAS 1251 67899***99******99987 PP == domain 19 score: 4.2 bits; conditional E-value: 0.0023 Toxin_16 16 CCPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353293_3 1254 LCPGhTSCQITEKDGAS 1270 599989*******9987 PP == domain 20 score: 6.4 bits; conditional E-value: 0.00045 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1269 ASAPHCPGhTSCQITEKDGAS 1289 6789****99******99987 PP == domain 21 score: 5.7 bits; conditional E-value: 0.00074 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353293_3 1289 SPPQCPGhTSCQITEKDGAS 1308 5699***99*******9987 PP == domain 22 score: 7.2 bits; conditional E-value: 0.00026 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1307 ASAPLCPGhTSCQITEKDGAS 1327 6789****99*******9987 PP == domain 23 score: 6.5 bits; conditional E-value: 0.00042 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1326 ASAPQCPGhTSCQITEKDGAS 1346 67899***99******99987 PP == domain 24 score: 5.8 bits; conditional E-value: 0.00069 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353293_3 1346 SPPQCPGhTSCQITEKDGAS 1365 5699***99*******9987 PP == domain 25 score: 7.3 bits; conditional E-value: 0.00025 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1364 ASAPLCPGhTSCQITEKDGAS 1384 6789****99******99987 PP == domain 26 score: 5.8 bits; conditional E-value: 0.00072 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353293_3 1384 SPPQCPGhTSCQITEKDGAS 1403 5699***99*******9987 PP == domain 27 score: 6.1 bits; conditional E-value: 0.00058 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1402 ASAPQCPGhTSCQITEKDGAS 1422 67899***99******99987 PP == domain 28 score: 4.4 bits; conditional E-value: 0.002 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353293_3 1422 SPPQCPGhTSCQITEKDGAS 1441 5699***99*******9987 PP == domain 29 score: 3.4 bits; conditional E-value: 0.0041 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P C G tsC+ e +G s T353293_3 1440 ASAPLCTGhTSCQITEKDGAS 1460 5678888879*******9987 PP == domain 30 score: 7.1 bits; conditional E-value: 0.00029 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1459 ASAPQCPGhTSCQITERDGAS 1479 67899***99******99987 PP == domain 31 score: 7.5 bits; conditional E-value: 0.0002 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1478 ASAPLCPGhTSCQITEKDGAS 1498 6789****99*******9987 PP == domain 32 score: 4.6 bits; conditional E-value: 0.0017 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1497 ASAPQCPGhTSCEITEKDGAS 1517 67899***99******99987 PP == domain 33 score: 7.3 bits; conditional E-value: 0.00025 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1516 ASAPLCPGhTSCQITERDGAS 1536 6789****99******99987 PP == domain 34 score: 6.4 bits; conditional E-value: 0.00047 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1535 ASAPQCPGhTSCQITERDGAS 1555 67899***99******99987 PP == domain 35 score: 2.2 bits; conditional E-value: 0.0097 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG t C+ e G s T353293_3 1554 ASAPLCPGhTYCQITERGGAS 1574 6789****889**99998876 PP == domain 36 score: 6.7 bits; conditional E-value: 0.00038 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1573 ASAPQCPGhTSCQITEQDGAS 1593 67899**999*******9987 PP == domain 37 score: 5.8 bits; conditional E-value: 0.00069 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353293_3 1592 ASTPQCPGhTSCQITEQDGAS 1612 66899***99*******9987 PP == domain 38 score: -4.5 bits; conditional E-value: 1 Toxin_16 13 CCPCCPG 19 CPC G T353293_3 1624 LCPCVGG 1630 3677655 PP == domain 39 score: -0.1 bits; conditional E-value: 0.048 Toxin_16 12 ACCPCCPGtsCkapesnGv 30 ACC C ts + + G T353293_3 2254 ACCGCSHCTSGLGKSPRGR 2272 9********9988777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.54u 0.33s 00:00:01.87 Elapsed: 00:00:01.08 # Mc/sec: 6847.45 // Query: T281178_1 [L=5115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.38s 00:00:02.16 Elapsed: 00:00:00.84 # Mc/sec: 17420.41 // Query: T281178_2 [L=5115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.70 # Mc/sec: 20904.49 // Query: T281178_3 [L=5114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 968 (0.0593647); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.35u 0.48s 00:00:02.83 Elapsed: 00:00:00.80 # Mc/sec: 18287.86 // Query: T271700_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-21 75.6 0.4 4.5e-21 74.4 0.4 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.4 0.4 2.7e-25 4.5e-21 7 56 .. 198 247 .. 198 247 .. 0.96 Alignments for each domain: == domain 1 score: 74.4 bits; conditional E-value: 2.7e-25 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetits 56 r a+Wld++e pk++pk++lhqkkvm+tVwWs+++li+y+fl+pg+ti s T271700_1 198 RPAEWLDREEVPKHFPKSNLHQKKVMVTVWWSTASLIHYSFLNPGKTIIS 247 5689********************************************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.68 # Mc/sec: 2873.45 // Query: T271700_2 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 3256.58 // Query: T271700_3 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 3151.53 // Query: T023857_1 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-14 53.8 0.0 2.8e-14 53.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.2 0.0 1.7e-18 2.8e-14 2 118 .. 210 323 .. 209 324 .. 0.94 Alignments for each domain: == domain 1 score: 53.2 bits; conditional E-value: 1.7e-18 rve 2 trpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 ++p +wqvD+ +++ ++++++++l+ id++ ++ +a++ + +a+t+i+ l + + + +g p + sD+ + +ka+ ++ + +gi +s++ p+ T023857_1 210 NQPATWWQVDYIgPLP--SWKSQSFVLTGIDTYLGYGFAYPACNA-SAKTTIRGLMKCLTHHHGI-PNSIASDQRIHFMAKAVWQWSRAHGIYWSYHIPH 305 5899********7777..77778**********************.9999999999999999998.********************************** PP rve 101 rpqdnGkvErfnrtlkde 118 +p+ G++E n++lk + T023857_1 306 HPEAAGLIEWWNGLLKSQ 323 ***************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 3931.33 // Query: T023857_2 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 4057.61 // Query: T023857_3 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-14 52.0 0.0 7.4e-14 51.4 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.4 0.0 4.5e-18 7.4e-14 7 106 .. 391 490 .. 386 509 .. 0.92 Alignments for each domain: == domain 1 score: 51.4 bits; conditional E-value: 4.5e-18 BESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC CS dUTPase 7 trkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt 106 + + sAg+++ ++ t++pg+t ++p+++++ lp + +l+lp S a+kg++v+ gvid dy+ e+++ l+n +k++ ++gd + +L++ ++ T023857_3 391 VPMTLHSAGLEVLVPGGGTLPPGDTRMIPLNRKLRLPPRHFGLLLPLSQQAKKGVTVLAGVIDPDYQDEISILLYNGGKEEYAWNTGDPLGHLLVLPCPM 490 5667789****************************************************************************************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 3477.95 // Query: T052984_1 [L=9674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.78u 0.51s 00:00:03.29 Elapsed: 00:00:00.87 # Mc/sec: 31811.11 // Query: T052984_2 [L=9674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.76u 0.49s 00:00:03.25 Elapsed: 00:00:00.89 # Mc/sec: 31096.26 // Query: T052984_3 [L=9673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.72u 0.45s 00:00:03.17 Elapsed: 00:00:00.90 # Mc/sec: 30747.57 // Query: T164586_1 [L=6446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.45s 00:00:02.26 Elapsed: 00:00:00.75 # Mc/sec: 24587.88 // Query: T164586_2 [L=6445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.42s 00:00:02.20 Elapsed: 00:00:00.70 # Mc/sec: 26340.07 // Query: T164586_3 [L=6445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.49s 00:00:02.61 Elapsed: 00:00:00.93 # Mc/sec: 19825.86 // Query: T377273_1 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-07 30.7 0.0 1.1e-06 28.7 0.0 1.9 2 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.7 0.0 7e-11 1.1e-06 5 56 .. 320 372 .. 317 381 .. 0.84 2 ? -1.8 0.0 0.18 3e+03 2 25 .. 746 769 .. 745 784 .. 0.77 Alignments for each domain: == domain 1 score: 28.7 bits; conditional E-value: 7e-11 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 v+Y+DGs++ n +ge++ag+ v+ + + +++l++ ++++++EL+A+i aL+ T377273_1 320 VLYVDGSSFINpQGERCAGYaVVTLD-TVVEARSLPQGTSAQKTELIALIWALE 372 89*********99999****777766.33556778899***************8 PP == domain 2 score: -1.8 bits; conditional E-value: 0.18 .SEEEEEEEEEECTTTEEEEEEEE CS RNase_H 2 kavvvYtDGsclgnsgeggagavl 25 k++++ +D+++ ns++ g+g++ T377273_1 746 KQITLRCDACAAINSKKLGIGCGS 769 678999************999954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.70 # Mc/sec: 5999.57 // Query: T377273_2 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.8 0.7 3e-08 33.6 0.7 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger 2.7e-05 23.6 0.0 4e-05 23.1 0.0 1.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.6 0.7 3.7e-12 3e-08 1 39 [] 409 447 .. 409 447 .. 0.98 Alignments for each domain: == domain 1 score: 33.6 bits; conditional E-value: 3.7e-12 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll ++++ ++++++++V+++C++C+ T377273_2 409 HETTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCR 447 9*************************************5 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.0 5e-09 4e-05 122 179 .. 16 73 .. 2 84 .. 0.84 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 5e-09 ..TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee 179 +++y++ +lp G+++SP++f ++ + l+++ +r g+ ll+Y+DD+++ + + + T377273_2 16 GVTTQYTWIRLPKGFKNSPTIFGEALAQDLQKFPTRDLGCMLLQYVDDLFLGHPTAVR 73 56789********************************************998877655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 5999.57 // Query: T377273_3 [L=1467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-06 26.0 0.0 1.4e-05 25.1 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 0.0 8.6e-10 1.4e-05 62 108 .. 489 534 .. 473 536 .. 0.93 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 8.6e-10 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkv 108 ++g p+ + sDng+++++ ++++++ lgi++++++++rpq+ Gkv T377273_3 489 RFGL-PLWIGSDNGPAFVADLVQKMAKVLGITWKLHAAYRPQSSGKV 534 4555.99999***********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 6082.37 // Query: T230009_1 [L=1034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 4771.13 // Query: T230009_2 [L=1034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-33 113.8 7.7 9.5e-33 112.7 7.7 1.5 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.7 7.7 5.8e-37 9.5e-33 40 121 .] 206 287 .. 201 287 .. 0.98 Alignments for each domain: == domain 1 score: 112.7 bits; conditional E-value: 5.8e-37 TMEM191C 40 cekrlfggagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 e+rlfgg++a a+r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T230009_2 206 QETRLFGGPRALAIRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 287 69*******************************************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 4622.03 // Query: T230009_3 [L=1034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-06 27.1 0.1 7.1e-06 26.0 0.1 1.5 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 0.1 4.3e-10 7.1e-06 16 41 .. 167 192 .. 163 213 .. 0.92 Alignments for each domain: == domain 1 score: 26.0 bits; conditional E-value: 4.3e-10 TMEM191C 16 lcdsqlrrvqdcagslmeevaradce 41 cd+qlr vq++++slmee+arad+ T230009_3 167 RCDGQLRGVQYSTESLMEEMARADRP 192 69**********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 534 (0.0327487); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 4622.03 // Query: T157126_1 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6042.88 // Query: T157126_2 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 4783.94 // Query: T157126_3 [L=1203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 5136.68 // Query: T094729_1 [L=586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 2794.08 // Query: T094729_2 [L=585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 2656.49 // Query: T094729_3 [L=585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3157.71 // Query: T025730_1 [L=1120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 4643.67 // Query: T025730_2 [L=1120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 4711.96 // Query: T025730_3 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 4778.01 // Query: T212325_1 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 7088.03 // Query: T212325_2 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 6882.58 // Query: T212325_3 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 6983.79 // Query: T212046_1 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 5852.08 // Query: T212046_2 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.43s 00:00:01.41 Elapsed: 00:00:00.74 # Mc/sec: 5377.59 // Query: T212046_3 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.77 # Mc/sec: 5164.36 // Query: T337122_1 [L=3344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.80 # Mc/sec: 11958.27 // Query: T337122_2 [L=3344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.79 # Mc/sec: 12109.64 // Query: T337122_3 [L=3344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.71 # Mc/sec: 13474.11 // Query: T138467_1 [L=2507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-05 22.6 1.0 0.29 10.7 0.1 5.0 5 Pentapeptide Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.1 1.8e-05 0.29 2 25 .. 508 531 .. 508 536 .. 0.86 2 ? 1.5 0.0 0.013 2.1e+02 28 39 .. 592 603 .. 583 613 .. 0.59 3 ? 1.8 0.0 0.011 1.8e+02 3 24 .. 641 662 .. 641 663 .. 0.77 4 ! 2.0 0.0 0.0092 1.5e+02 3 24 .. 729 750 .. 727 751 .. 0.79 5 ? -2.0 0.0 0.17 2.7e+03 19 28 .. 813 822 .. 802 824 .. 0.45 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 1.8e-05 B-TT-B-CCCCCCCCCCESEEECT CS Pentapeptide 2 nLsgAnLsganLsganlsgAnLtg 25 +Ls+++Ls +Ls+ +ls+ +L++ T138467_1 508 DLSRVDLSRVDLSREDLSRVDLSR 531 799999999999999999999986 PP == domain 2 score: 1.5 bits; conditional E-value: 0.013 -TT-EECCEEEC CS Pentapeptide 28 lsgAdLsganLs 39 ls+ dLs+++Ls T138467_1 592 LSRVDLSRVDLS 603 444444444443 PP == domain 3 score: 1.8 bits; conditional E-value: 0.011 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138467_1 641 LSRVDLSYMHQSRVDLSRVNLS 662 6788888888888888888886 PP == domain 4 score: 2.0 bits; conditional E-value: 0.0092 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138467_1 729 LSRVDLSYMHQSRVDLSRVNLS 750 7888888888888888888886 PP == domain 5 score: -2.0 bits; conditional E-value: 0.17 ESEEECT-B- CS Pentapeptide 19 sgAnLtgAnl 28 s+ +L+++nl T138467_1 813 SRVDLSRVNL 822 4444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.59 # Mc/sec: 12156.10 // Query: T138467_2 [L=2507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.60 # Mc/sec: 11953.50 // Query: T138467_3 [L=2507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.71 # Mc/sec: 10101.55 // Query: T268994_1 [L=1995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-19 67.8 0.2 2.3e-18 65.7 0.0 2.2 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.027 13.9 0.1 0.048 13.1 0.1 1.3 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.7 0.0 2.8e-22 2.3e-18 11 80 .] 1321 1389 .. 1318 1389 .. 0.96 2 ? -1.7 0.1 0.31 2.5e+03 31 40 .. 1921 1930 .. 1917 1933 .. 0.82 Alignments for each domain: == domain 1 score: 65.7 bits; conditional E-value: 2.8e-22 Transposase_1 11 WldkgetpkkvpkpelhqkkvmltVwW.sakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 Wld++e+pk++p+p+lhqk W sa+gli y+fl+pgeti se Yaqq+ +++qkl +++ alvnr T268994_1 1321 WLDREEAPKHFPNPNLHQKEGHG--HW*SADGLIRYSFLNPGETIISEDYAQQIYEMHQKLPHLQLALVNR 1389 ********************965..5*******************************************97 PP == domain 2 score: -1.7 bits; conditional E-value: 0.31 Transposase_1 31 vmltVwWsak 40 ++l++wW+ k T268994_1 1921 TLLHCWWDCK 1930 689*****77 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 5.9e-06 0.048 65 111 .. 1647 1693 .. 1615 1696 .. 0.81 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 5.9e-06 DUF4417 65 kqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 ++ +++ Pdf ly+ + + +w y++r i ++ ++ ++iP++ T268994_1 1647 NKAGGITLPDFKLYYKTTVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 1693 34489*****************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.73 # Mc/sec: 7818.30 // Query: T268994_2 [L=1994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 8776.15 // Query: T268994_3 [L=1994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-07 28.3 0.7 1.8e-06 27.3 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.16 11.4 0.0 0.32 10.5 0.0 1.5 1 HTH_24 Winged helix-turn-helix DNA-binding Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.7 2.2e-10 1.8e-06 1 16 [. 427 442 .. 427 444 .. 0.94 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 2.2e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T268994_3 427 SFVGTWMKLETIILSK 442 7**************7 PP >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 3.9e-05 0.32 11 39 .. 1229 1257 .. 1226 1258 .. 0.91 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 3.9e-05 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p ++ +e+A++l++ s v ++lk T268994_3 1229 IIEADPLTTTQEVAKELDVDHSRVAWHLK 1257 6778************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.75 # Mc/sec: 7605.99 // Query: T352610_1 [L=1012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 4321.13 // Query: T352610_2 [L=1012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 4595.49 // Query: T352610_3 [L=1011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 4741.47 // Query: T269183_1 [L=1912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 101 (0.00619404); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 8546.73 // Query: T269183_2 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 8410.84 // Query: T269183_3 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-152 506.5 18.8 5.3e-152 505.8 18.8 1.3 1 Transposase_22 L1 transposable element 3.2e-10 40.1 0.0 6e-10 39.3 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.4e-09 37.7 1.4 4.4e-09 36.1 1.4 2.0 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.0009 18.3 8.3 0.0016 17.5 8.3 1.3 1 Atg14 Vacuolar sorting 38 and autophagy-related su 0.0087 16.4 6.8 0.025 14.9 6.8 1.8 1 Spectrin Spectrin repeat 0.0087 14.2 9.5 0.014 13.5 9.5 1.2 1 EzrA Septation ring formation regulator, EzrA ------ inclusion threshold ------ 0.012 15.7 7.8 0.027 14.5 7.8 1.6 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.016 15.6 9.8 0.012 16.0 6.0 2.4 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.018 14.3 11.6 0.036 13.3 11.6 1.4 1 GAS Growth-arrest specific micro-tubule binding 0.021 14.6 4.3 0.048 13.4 4.3 1.6 1 Sec34 Sec34-like family 0.023 14.6 9.7 0.07 13.1 9.7 1.8 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.025 14.8 10.0 0.049 13.8 10.0 1.4 1 zf-C4H2 Zinc finger-containing protein 0.055 13.3 2.4 0.15 11.9 2.4 1.6 1 DUF1664 Protein of unknown function (DUF1664) 0.069 12.4 12.1 0.14 11.4 12.1 1.4 1 APG6 Autophagy protein Apg6 0.11 12.2 10.7 0.2 11.3 10.7 1.4 1 IncA IncA protein 0.12 12.4 7.5 0.38 10.7 7.5 1.8 1 Mod_r Modifier of rudimentary (Mod(r)) protein 0.13 12.6 7.4 0.46 10.8 7.4 1.9 1 ZapB Cell division protein ZapB 0.15 12.2 5.9 0.43 10.7 5.9 1.8 1 KLRAQ Predicted coiled-coil domain-containing prot 0.31 10.7 15.9 0.055 13.1 8.4 2.7 3 TBPIP Tat binding protein 1(TBP-1)-interacting pro 0.46 10.2 8.5 0.87 9.2 8.5 1.4 1 DUF724 Protein of unknown function (DUF724) 0.51 10.6 1.6 0.74 10.1 0.2 2.0 1 LPP Lipoprotein leucine-zipper 0.53 8.0 5.9 1.2 6.8 5.9 1.5 1 Prominin Prominin 0.62 9.8 10.1 1.4 8.6 10.1 1.6 1 Mnd1 Mnd1 family 0.73 8.9 4.6 1.7 7.7 4.6 1.6 1 TMPIT TMPIT-like protein 0.87 8.0 7.7 1.5 7.2 7.7 1.3 1 DUF342 Protein of unknown function (DUF342) 1.1 9.1 3.4 3 7.7 3.4 1.6 1 Laminin_II Laminin Domain II 1.1 9.2 6.3 2.7 7.9 6.3 1.6 1 Nup54 Nucleoporin complex subunit 54 1.2 9.7 4.1 2.7 8.6 3.3 2.1 1 DUF2203 Uncharacterized conserved protein (DUF2203) 1.3 9.1 14.4 2.5 8.2 14.4 1.5 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1.4 9.5 5.8 10 6.8 5.8 2.5 1 Occludin_ELL Occludin homology domain 1.5 9.0 4.4 4.5 7.4 4.4 1.9 1 Spc24 Spc24 subunit of Ndc80 1.8 8.3 7.3 15 5.3 0.1 2.4 2 Apolipoprotein Apolipoprotein A1/A4/E domain 2 8.8 6.8 11 6.5 6.8 2.3 1 DUF16 Protein of unknown function DUF16 2.2 7.7 8.4 1.2 8.5 5.8 1.8 2 PspA_IM30 PspA/IM30 family 3.3 7.8 9.5 0.22 11.5 3.0 2.4 2 Med2 Mediator complex subunit 2 4.1 7.4 14.0 14 5.6 14.0 1.9 1 ATG16 Autophagy protein 16 (ATG16) 9.2 6.7 7.0 23 5.4 5.9 2.1 2 UPF0449 Uncharacterised protein family UPF0449 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 505.8 18.8 1.2e-154 5.3e-152 1 368 [] 1254 1589 .. 1254 1589 .. 0.98 Alignments for each domain: == domain 1 score: 505.8 bits; conditional E-value: 1.2e-154 XXXXX...XXXXXXXX.XXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXX CS Transposase_22 1 kGkkknptnrkqdnsk.sserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekql 85 +Gkk+ nrk++nsk ++s+P+ke+sssPa e++++++df+elr+e++++++y el+e+i++k+ke+e ++k++ee ntek+l T269183_3 1254 MGKKQ---NRKTGNSK*Q-STSPPPKEHSSSPAM--EQSWMENDFDELREEGFRRSNYFELREDIQTKGKEVEnFEKNLEEcitritNTEKCL 1340 79***...******9775.479************..*********************************************888888888888 PP X..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 86 kiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileq 178 k el+elktk++el++e++ sl+sr+d+lee+vsa+ede++e+++e+k+rekr+k++eq T269183_3 1341 K------------------ELMELKTKAQELREECR------------------SLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQ 1397 8..................9****************..................*************************************** PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnl l Gv+e + e+++klen+l++ii+enfPnl+++an++iqei+r P+ ++s+ra++rhiiv +tkv++ +k+l+a+rek T269183_3 1398 SLQEIWDYVKRPNLHLTGVPERDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRMPQGYSSRRATPRHIIVGFTKVEMNEKMLRAAREK 1490 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 Grvt kGkPirltadlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T269183_3 1491 GRVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 1583 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 +l++++ T269183_3 1584 PLQNHA 1589 ****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.3 0.0 1.4e-12 6e-10 1 113 [] 1624 1843 .. 1624 1843 .. 0.86 Alignments for each domain: == domain 1 score: 39.3 bits; conditional E-value: 1.4e-12 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++++ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T269183_3 1624 LTLNVNG----LNAPIKRHRLANWIKSQNPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimv 1713 699****....7778899*******************999888777666688666778888999999*99999999666778899999999999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T269183_3 1714 kgsiqqeeltilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrstrqkvnkdtqelnsalhqadlidiyrtlhpksteytff 1807 9999999****************9999999999999999999******9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T269183_3 1808 saphhtysKIDHILGSKALLSKCKRTEIITNYlSDH 1843 9999999999******95554444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 1.4 1e-11 4.4e-09 2 118 .. 1723 1846 .. 1722 1847 .. 0.83 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 1e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T269183_3 1723 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQADLIDIyrtLHPKSTeYTFFSAPHh 1812 7999***9999.777777778888888876.89**************9888879***************99666664444444777666665 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH++i T269183_3 1813 tYSKIDHILGSKALLSKckRTEIITNYLSDHSAI 1846 68***************98666779******998 PP >> Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 8.3 3.6e-06 0.0016 18 110 .. 1302 1400 .. 1299 1466 .. 0.82 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 3.6e-06 Atg14 18 rnrlyekrerlaklksekeslkkkieealelkeeaeqledkiknkkakleeiksliaelrerlqelkdklsqlkkeieekkkklaklsdklk...... 109 r+ ++e+re+++ +e e ++k +ee +++ +++e+ ++++ +k+k++e++ + ++lr+r+ +l++k+s +e++e k++ + + + +k T269183_3 1302 RSNYFELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKrneqsl 1399 67889****************************************************************************99888888887333333 PP Atg14 110 k 110 + T269183_3 1400 Q 1400 0 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 6.8 5.7e-05 0.025 2 94 .. 1318 1408 .. 1317 1410 .. 0.95 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 5.7e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++q+l ++++ l+ ++ +e+v a ++ +++ +eg++ +++i+ + l+e W+ +k+ T269183_3 1318 EVENFEKNLEECITRITNTEKCL--KELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEIWDYVKR 1408 6789*******************..77778999*******************************************************99875 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 9.5 3.1e-05 0.014 320 459 .. 1290 1437 .. 1279 1456 .. 0.79 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.1e-05 HHHHTTGGG-TTTS-GGGSSTT...TSTTHHHHHHHHHHHHHHHHHHHHHHS...-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS EzrA 320 kqnkelkeeldrlkqsYeLsee...eleklrelekelkelekdyeeleekle...ekkvaYSelqeeleeleekleeieekqeelleslkslrkdEkr 411 + ++el+ee r ++ +eL e+ + ++++++ek+l+e+ +++ + e+ l+ e k+ el+ee+++l ++++++eek+ +++++++++++ k T269183_3 1290 NDFDELREEGFRRSNYFELREDiqtKGKEVENFEKNLEECITRITNTEKCLKelmELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKF 1387 55666666666666777776652224567888899999988877766655551115677778999********************************* PP HHHHHHHHHHHHHHHHHHSSS..-SS-S-TTTHHHHSTTTSTTTHHHHHH CS EzrA 412 Areqldeikkelkeikrkiek..snLPgiPesyleelkeasdeieelake 459 ++++++ ++ l+ei ++++ +L g+Pe+ e+ ++ ++ ++++++e T269183_3 1388 REKRIKRNEQSLQEIWDYVKRpnLHLTGVPERDGENGTKLENTLQDIIQE 1437 *******************97225689****9999988888888888776 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 7.8 6.2e-05 0.027 6 100 .. 1287 1381 .. 1283 1384 .. 0.96 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 6.2e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e +R ++ ++ +++ ++ ++ ++ lee+ ++ + k +++++ k +a+el++e ++l + ++le++++++e+e++++ T269183_3 1287 WMENDFDELREEGFRRSNYFELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEM 1381 7889****************************************************************************************986 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 16.0 6.0 2.8e-05 0.012 3 95 .. 1305 1406 .. 1304 1408 .. 0.74 2 ? 0.2 0.1 2.3 1e+03 7 53 .. 1742 1788 .. 1739 1806 .. 0.77 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 2.8e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrweelled.tsss....tseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 +fe +e++q + +++e+ +++ee + t+++ + el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ + T269183_3 1305 YFELREDIQTKGKEVENFEKNLEECITRiTNTEkclkELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDemneMKQEGKFREKRIKRNEQSL 1399 999******9988888888888543333033323455999***************************9997733223344777788888888777 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T269183_3 1400 QEIWDYV 1406 7776655 PP == domain 2 score: 0.2 bits; conditional E-value: 2.3 Syntaxin-6_N 7 keeVqkslnkleslyrrweelledtssstseeldetrteLrkalrsi 53 ++ q l++ + +++ ++ l++ + st++++++ ++eL++al+++ T269183_3 1742 LSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA 1788 567788888888888889754555555679999999*****999865 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 11.6 8.2e-05 0.036 51 128 .. 1307 1384 .. 1292 1401 .. 0.82 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 8.2e-05 GAS 51 eiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelykk 128 e+ ++ + +++++ ek++ee +++n ek ++l++lk++ +el +e ++l+ ++l+++++++e+e +e++++ T269183_3 1307 ELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQE 1384 45555555556666667777777778889999******************************************9985 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 4.3 0.00011 0.048 3 66 .. 1320 1383 .. 1318 1388 .. 0.92 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 0.00011 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrleelaeeiee 66 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e+ + +e+ +e+++ T269183_3 1320 ENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQ 1383 688999*******************************************999999887777665 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 9.7 0.00016 0.07 25 102 .. 1306 1386 .. 1296 1402 .. 0.84 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 0.00016 TPR_MLP1_2 25 qklqedlekqaeiakeaqqkYer...elvkhaedikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkeele 102 +l+ed++++ +++++ +++ e+ +++ ++ +kel +l+++++el++e ++l+++ +++++++++ e++++e k+e + T269183_3 1306 FELREDIQTKGKEVENFEKNLEEcitRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGK 1386 5799*****************98332566788899****************************************999755 PP >> zf-C4H2 Zinc finger-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 10.0 0.00011 0.049 4 152 .. 1311 1459 .. 1309 1497 .. 0.77 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 0.00011 zf-C4H2 4 eirektleleklknklakevealekeekcleey...kkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeeine 98 +i++k +e+e+ +++l + + ++++ekcl+e k + ++L++E ++ ++++ ++a+E+ ++e ++e + + +++k+ + ++++ + + + T269183_3 1311 DIQTKGKEVENFEKNLEECITRITNTEKCLKELmelKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEIWDYVKR 1408 7899999999999999999999999999998751116677899999999999999*****************************99999999888865 PP zf-C4H2 99 lrselglekledleeeeeellkeeifekkesstapapplpptsllsklsqapsa 152 +l l+ +++ + e+++ l++++ + +++ p+ + + + +++++ p+ T269183_3 1409 --PNLHLTGVPERDGENGTKLENTL-QDIIQENFPNLARQANIQIQEIQRMPQG 1459 ..44667777777777777777666.4444444444444444555555555554 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 2.4 0.00034 0.15 66 122 .. 1317 1376 .. 1306 1386 .. 0.80 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00034 DUF1664 66 qridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 +++++ +k+l+e++ +++++ +e++e++ + +e++e+ +s+++ +Le+k++ +e+ T269183_3 1317 KEVENFEKNLEECITRITNTEkclKELMELKTKAQELREECRSLRSRCDQLEEKVSAMED 1376 678888999999987776666222577888999999999999999999999999998886 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 12.1 0.00031 0.14 20 103 .. 1311 1391 .. 1285 1413 .. 0.49 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00031 APG6 20 elekerdayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywre 103 + + + ++ e+f k+le+ ++ + ++e+ kel +l+ + +el+ee + l++ +++lee+++++e+e++e+++e + ++ T269183_3 1311 DIQTKGKEVENFEKNLEECITRIT---NTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKR 1391 222222333333333333333332...445555555555555555555555555555555555555555555555544332222 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 10.7 0.00045 0.2 78 177 .. 1307 1400 .. 1268 1408 .. 0.68 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00045 IncA 78 rlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqed 172 +l e+++ +++ e+ le+ +r+ +e++lk+l e +++ q ee +s++sr++ lee++++++ e+ e+ qe + + +r +++ T269183_3 1307 ELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQelrEECRSLRSRCDQLEEKVSAMEDEMNEMK---------QEGKFREKRIKRN 1395 5667777777788888888888888888888877777777777776667777777777777777777777777777.........4444444444444 PP IncA 173 lqrlq 177 q lq T269183_3 1396 EQSLQ 1400 44444 PP >> Mod_r Modifier of rudimentary (Mod(r)) protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 7.5 0.00086 0.38 25 105 .. 1315 1392 .. 1291 1403 .. 0.55 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00086 Mod_r 25 l.pevkqlkeekeellaeneslaeknlsl.epeleelrselqekleelkelekefeekeqeldellekfspdallarLqaava 105 +ev++ ++++ee+++ + ++ ++ +el el+++ qe +ee+++l+++++++e++ +++ +++++ +++++ T269183_3 1315 KgKEVENFEKNLEECITRITNT-----EKcLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRI 1392 3355666666666665544333.....22233555555555555555555555555555555555555555544444444444 PP >> ZapB Cell division protein ZapB # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 7.4 0.001 0.46 5 46 .. 1342 1388 .. 1339 1403 .. 0.79 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.001 ZapB 5 lLeqLEskvqkaidtitlLqmeieeLkeeneelkeenrele.....e 46 L +L +k q++ +++++L+ + ++L+e+++++++e++e++ + T269183_3 1342 ELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKqegkfR 1388 5889*************************************555442 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 5.9 0.00097 0.43 33 88 .. 1344 1395 .. 1304 1404 .. 0.75 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00097 KLRAQ 33 eelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqk 88 elk+k+q+lr +E sL r +qLe +v+++ +e++e +++ +k ++k +++ T269183_3 1344 MELKTKAQELR---EECRSLRSRCDQLEEKVSAMEDEMNEMKQE-GKFREKRIKRN 1395 35777777777...6999********************987644.55553333332 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.4 0.78 3.4e+02 113 139 .. 1307 1333 .. 1287 1342 .. 0.79 2 ? 13.1 8.4 0.00012 0.055 72 137 .. 1341 1404 .. 1336 1412 .. 0.91 3 ? -1.8 0.0 4.9 2.1e+03 95 121 .. 1771 1797 .. 1755 1804 .. 0.73 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.78 TBPIP 113 elleeiqelkkeveeieekLeslkesn 139 el+e iq+ keve+ e+ Le+ + T269183_3 1307 ELREDIQTKGKEVENFEKNLEECITRI 1333 899999999999999999998765544 PP == domain 2 score: 13.1 bits; conditional E-value: 0.00012 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeseltteelleeiqelkkeveeieekLeslke 137 +el++l+ + +elree+++l + + +le++ ++e e+ +e+++e + ++k ++++e+ L+++ + T269183_3 1341 KELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEM--NEMKQEGKFREKRIKRNEQSLQEIWD 1404 5899*******************************999..9******************9999865 PP == domain 3 score: -1.8 bits; conditional E-value: 4.9 TBPIP 95 iselekelkkLeseltteelleeiqel 121 ++++k ++L+s+l +++l++ +l T269183_3 1771 RQKVNKDTQELNSALHQADLIDIYRTL 1797 346778889999999999999876665 PP >> DUF724 Protein of unknown function (DUF724) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 8.5 0.002 0.87 80 170 .. 1312 1402 .. 1291 1413 .. 0.73 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.002 DUF724 80 LekhGFdVkalqsrlnkLlslkdeqtklleelkklekkieeeesekskleeeldelekkilelerqlallkekkeaadkeiarlkseaekl 170 ++++G +V+ +++ l++ + ++ +k+l+el +l+ k +e ++e ++l ++ d+le+k++ +e + + +k++ + +k+i r +++ +++ T269183_3 1312 IQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEI 1402 4556667777777777777777777777777777777777777777777778888888888777777777777777777777766666555 PP >> LPP Lipoprotein leucine-zipper # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.2 0.0017 0.74 2 37 .. 1350 1385 .. 1349 1393 .. 0.90 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.0017 LPP 2 vdeLssqVsqLnskvdqlssdvnsakaavqaakeEA 37 +eL ++ +L s dql+++v+++++++++ k+E T269183_3 1350 AQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEG 1385 578999999************************996 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 5.9 0.0028 1.2 230 351 .. 1326 1455 .. 1301 1463 .. 0.65 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0028 Prominin 230 lesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCskilssleiekldtskcl.........dql 317 le+ + +++ e+ l++l e k++ +++++ +Lr+ +qL++ ++++ +++n++ ++ + + e+ k ++++ +e++d+ k + T269183_3 1326 LEEC-ITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEgKFR-EKRIKRNEQSLQEIWDYVKRPnlhltgvpeRDG 1421 3333.44455556666666667777777777777777777777777777777777776665555.333333333334456655544334422225555 PP Prominin 318 pnvdevlealeevletnlssivkeglarlneipe 351 +n +++ ++l++++++n+ +++++++ +++ei++ T269183_3 1422 ENGTKLENTLQDIIQENFPNLARQANIQIQEIQR 1455 8899999************************986 PP >> Mnd1 Mnd1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 10.1 0.0032 1.4 69 150 .. 1303 1384 .. 1284 1408 .. 0.81 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0032 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...S-HHHHHHHHHHHHHHHHH CS Mnd1 69 keleklkkeveelkkkikeleekleaekeereeseereelleelqeleeekkelkeeleklke...ldpekleklkeelekakea 150 +++ +l+++++ k++++ e++le+ ++ +++ e+ l+el el+++ +el+ee+ +l++ +ek++ +++e++++k++ T269183_3 1303 SNYFELREDIQTKGKEVENFEKNLEECITRITNT---EKCLKELMELKTKAQELREECRSLRSrcdQLEEKVSAMEDEMNEMKQE 1384 5555788888889999999999999999999998...889999999999999999999999887444467777777777777765 PP >> TMPIT TMPIT-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 4.6 0.0038 1.7 32 89 .. 1336 1399 .. 1302 1446 .. 0.56 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0038 TMPIT 32 qskcskeikkqkkrlkelksslkklkksvk......eeeeeeveelkeelkerkkvlkevesll 89 +kc ke+ + k +++el+++ ++l+++ + + e+e++e+k+e k r+k +k+ e++l T269183_3 1336 TEKCLKELMELKTKAQELREECRSLRSRCDqleekvSAMEDEMNEMKQEGKFREKRIKRNEQSL 1399 2344444444444444444444444444332222223444455555555555555555444444 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 7.7 0.0034 1.5 336 420 .. 1316 1395 .. 1299 1408 .. 0.74 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0034 DUF342 336 keklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvn 420 ++++++e++lee+ ++++ +k +k+l +lk + +e +e+ +l+ +l+e+++++e+e++e+k+e + + e++ik n T269183_3 1316 GKEVENFEKNLEECITRITNTEKCLKELMELKTKA---QELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFR--EKRIKRN 1395 34557777777777777777777788888866544...58888999999999999999999999999999999888..5555554 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 3.4 0.0068 3 7 94 .. 1311 1398 .. 1307 1406 .. 0.75 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0068 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXX CS Laminin_II 7 eanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss.lsdnise 94 +++ + kev++ ++l++ + ++ + ++ +++ e + k++++ + r+ r+ +Le+++ ++d ++e+kq + ++ +++n + T269183_3 1311 DIQTKGKEVENFEKNLEECITRIT-NTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKrIKRNEQS 1398 556666667666666666666664.4455556667889999999999999999999999999999999999999998877777777555 PP >> Nup54 Nucleoporin complex subunit 54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 6.3 0.0062 2.7 33 137 .. 1307 1403 .. 1305 1406 .. 0.88 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0062 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS-HHH.H CS Nup54 33 dLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakrrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlndpaqlk 130 +L++ ++ kev+++++ l+e +r++++e + +++l ++k++ +el + + +l ++ + l+ + +a++ e +e++++ + e+++++++q T269183_3 1307 ELREDIQTKGKEVENFEKNLEECITRITNTE-----KCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQ-- 1397 57777788899********************.....999***********************************9999999999988999996444.. PP HHHHHHH CS Nup54 131 grvnelw 137 ++e+w T269183_3 1398 -SLQEIW 1403 .677776 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 3.3 0.0062 2.7 9 79 .. 1337 1409 .. 1326 1424 .. 0.73 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0062 DUF2203 9 nalLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvevkdl 79 ++ L +l el +++++lr+e ++l+++ ++ +++ ++ e +e+++e ++ e++i++ + ++e+ vk T269183_3 1337 EKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEdeMNEMKQEGKFREKRIKRNEQSLQEIWDYVKRP 1409 5677777777777777777777777777776666555546689999999999999999998888876666655 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 14.4 0.0057 2.5 60 152 .. 1306 1407 .. 1282 1410 .. 0.67 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0057 Jnk-SapK_ap_N 60 eqLetekerekelrkraeeeleei......edqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhe...retell 144 +L+++ + + ++ +++e++lee +++ +e el++k ++l+ee+r l +++++++++s++e++ +e+k+e + ++ r ++ l T269183_3 1306 FELREDIQTKGKEVENFEKNLEECitritnTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKrikRNEQSL 1399 4666666666666666676666551111112345556668889999******************************999988877566666666 PP Jnk-SapK_ap_N 145 kklkelve 152 ++ ++v+ T269183_3 1400 QEIWDYVK 1407 66666665 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 5.8 0.023 10 23 95 .. 1304 1377 .. 1300 1405 .. 0.81 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.023 Occludin_ELL 23 eYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKkl 95 +Y el +++++ k+++++e++l+e ++ ++++k +e l e+k + + +e ++ + rc++L+ek s + T269183_3 1304 NYFELREDIQTKGKEVENFEKNLEECITRITNTEKCLKE-LMELKTKAQelREECRSLRSRCDQLEEKVSAMEDE 1377 688999999999999999999999999999999999999.66666665557888999999999999998776555 PP >> Spc24 Spc24 subunit of Ndc80 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 4.4 0.01 4.5 10 49 .. 1340 1379 .. 1306 1403 .. 0.75 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.01 Spc24 10 akelsdleselesleselaklkeeleeleeeeeekeserv 49 kel +l++++++l++e ++l++++++lee+ ++ e+e++ T269183_3 1340 LKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMN 1379 5777777777777777777777777777777776444442 PP >> Apolipoprotein Apolipoprotein A1/A4/E domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 3.7 0.079 35 50 176 .. 1309 1384 .. 1289 1454 .. 0.62 2 ? 5.3 0.1 0.034 15 5 58 .. 1748 1802 .. 1744 1805 .. 0.82 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.079 HHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-.. CS Apolipoprotein 50 raklepyrdevqqqlgqnleelrqrlepyteelkerlaadaeelqerlaayseelrekleknveelkerlgpyaeqlrqklkqrleelkervr 142 r+ ++ + +ev +++++nlee r+++ + +++ el+ + ++++ee r T269183_3 1309 REDIQTKGKEV-ENFEKNLEECITRITNTEKC-----LKELMELKTKAQELREECR------------------------------------- 1358 44445555555.45555555544443333222.....2333333333333333333..................................... PP ---------SSSHHHHHHHTS-TTSHHHHHS--X CS Apolipoprotein 143 eaaeelkerleqqveelrekleaqakdlreklda 176 +l+++ ++l+ek++a+ +++ e ++ T269183_3 1359 --------SLRSRCDQLEEKVSAMEDEMNEMKQE 1384 ........44444445555555444444444444 PP == domain 2 score: 5.3 bits; conditional E-value: 0.034 CCCCHHHHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHCCCCHH CS Apolipoprotein 5 sldelkayaaeleeqLsplaeeaqdrlskeleelrqkl.raeleevraklepyrd 58 +ld+ + ++++++ Ls l ++++++++k+++el + l +a+l ++ +l p++ T269183_3 1748 DLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALhQADLIDIYRTLHPKST 1802 56666666789999999999******************99999988888877765 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 6.8 0.024 11 32 92 .. 1346 1406 .. 1292 1413 .. 0.77 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.024 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHH CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletL 92 k++ +++ ++ ++l + ++le+kv++ +++++e+k+e k +++++++ +++l+ i + + T269183_3 1346 LKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEIWDYV 1406 3344455555666999999*****************************9999999987655 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.8 0.0027 1.2 87 134 .. 1337 1384 .. 1306 1402 .. 0.59 2 ? -2.1 0.0 4.7 2.1e+03 68 117 .. 1425 1474 .. 1418 1493 .. 0.71 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0027 PspA_IM30 87 realaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134 ++ l+e+ +l+ +a++l+++ +rs +ql+++++a e ++e+k++ T269183_3 1337 EKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQE 1384 344555555555555555555555555555555555555555555554 PP == domain 2 score: -2.1 bits; conditional E-value: 4.7 PspA_IM30 68 kklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveql 117 kle+ + +++ ++LAr a +i++ + ++++ a r + T269183_3 1425 TKLENTLQDIIQENFPNLARQANIQIQEIQRMPQGYSSRRATPRHIIVGF 1474 67888888888899999999999999999988888777776666666555 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 3.0 0.00051 0.22 47 95 .. 1315 1363 .. 1298 1370 .. 0.83 2 ? -1.9 0.3 7.6 3.4e+03 61 91 .. 1367 1397 .. 1360 1401 .. 0.50 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00051 Med2 47 LkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 +++++F++ L + ++++++++++++l+e k++ +e++e ++ r r T269183_3 1315 KGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSR 1363 56789********************************999977666655 PP == domain 2 score: -1.9 bits; conditional E-value: 7.6 Med2 61 leiklndaksyveqlveikkekeeekekeee 91 le k++ ++ ++++++++k +e+ +++e+ T269183_3 1367 LEEKVSAMEDEMNEMKQEGKFREKRIKRNEQ 1397 4444444444444555554444444444444 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 14.0 0.033 14 71 133 .. 1335 1397 .. 1225 1414 .. 0.60 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.033 ATG16 71 snskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaelea 133 +++k +++ +l++k ++lree l+ ++ +l++++ ++++e+ + +++ k +e+r+++ e+ T269183_3 1335 NTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMNEMKQEGKFREKRIKRNEQ 1397 333444555555566666666666666666666666666666666666666666666665555 PP >> UPF0449 Uncharacterised protein family UPF0449 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.3 2.3 1e+03 40 95 .. 1275 1333 .. 1268 1338 .. 0.66 2 ? 5.4 5.9 0.052 23 56 100 .. 1335 1379 .. 1304 1380 .. 0.66 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 2.3 UPF0449 40 eedkkassseeedleaeveelYeqv...rtylelnerLeeakeeLkqkceeLktageeL 95 +e++++++ e++ +e++++el e+ +y el e ++ + +e+++ +++L+ +++ T269183_3 1275 KEHSSSPAMEQSWMENDFDELREEGfrrSNYFELREDIQTKGKEVENFEKNLEECITRI 1333 45666666666666666555444433335799999999999999999888888766655 PP == domain 2 score: 5.4 bits; conditional E-value: 0.052 UPF0449 56 eveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeeeie 100 + e++ +++ ++ ++L+e++ +L+++c++L+ + +e+e++ T269183_3 1335 NTEKCLKELMELKTKAQELREECRSLRSRCDQLEEKVSAMEDEMN 1379 367777777777777788888888888888888888888887765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1103 (0.0676438); expected 326.1 (0.02) Passed bias filter: 559 (0.0342819); expected 326.1 (0.02) Passed Vit filter: 173 (0.0106096); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 37 [number of targets reported over threshold] # CPU time: 1.69u 0.37s 00:00:02.06 Elapsed: 00:00:00.85 # Mc/sec: 6431.82 // Query: T348013_1 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 6146.81 // Query: T348013_2 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 6808.78 // Query: T348013_3 [L=1546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 6504.18 // Query: T275256_1 [L=3309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00031 20.9 0.0 0.00059 19.9 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.015 14.7 0.0 0.025 14.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 7.2e-08 0.00059 6 89 .. 814 892 .. 810 892 .. 0.84 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 7.2e-08 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 ++++ ++gk++ +l+ t A+++ ++ + P + a+ ++ Gi + ++ ++ ++ +l + f+ s++++p++pv+llG T275256_1 814 RVTLTVEGKPVPFLINTEATHSTLPSFQGPVS----LASITVVGINSQASKPLKTPQLWcQLRQYSFK--HSFFVIPTCPVPLLG 892 578999**************************....**********9997777766443034444455..5************99 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 3e-06 0.025 137 181 .. 613 657 .. 584 657 .. 0.91 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 3e-06 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ + rr+t dp+ + + + + fi+qsa+di+ T275256_1 613 YKNPAQFMAHSAATLRRFTALDPKRSKGRLMLNIHFITQSAPDIK 657 568****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.72 # Mc/sec: 13147.90 // Query: T275256_2 [L=3309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.89 # Mc/sec: 10636.50 // Query: T275256_3 [L=3308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.44s 00:00:01.70 Elapsed: 00:00:00.77 # Mc/sec: 12290.42 // Query: T062668_1 [L=5991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.42s 00:00:02.31 Elapsed: 00:00:00.89 # Mc/sec: 19257.56 // Query: T062668_2 [L=5991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.44s 00:00:02.35 Elapsed: 00:00:00.81 # Mc/sec: 21159.55 // Query: T062668_3 [L=5991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.41s 00:00:02.37 Elapsed: 00:00:00.89 # Mc/sec: 19257.56 // Query: T172345_1 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 12.3 0.0 0.27 11.3 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 1.7e-05 0.27 4 88 .. 632 712 .. 629 723 .. 0.84 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.7e-05 rve 4 pgelwqvDvtvgripdgggkayllvviddfsr.lilaeavsdemdastvialleravarfggvepervlsDngseytskafrefla 88 p e +qv +t+++ + gg++yllv + ++s+ + a++++++ +a +v+++l r + ++g p+ + sDn ++++ +++ ++ T172345_1 632 PFEDLQVNFTKMP--KCGGNKYLLVLMCTYSG*VE-AYPTWTK-KAREVTRVLLRDLIPRFGL-PLQIGSDNRLAFVADLVQKRAK 712 6677899999999..89999***********8864.6777777.7999999999999999999.************9886666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 8005.03 // Query: T172345_2 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-17 61.4 0.0 1.5e-16 60.7 0.0 1.2 1 RNase_H RNase H 3.6e-05 23.8 0.3 7.5e-05 22.8 0.3 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.7 0.0 1.9e-20 1.5e-16 5 123 .. 366 484 .. 363 486 .. 0.85 Alignments for each domain: == domain 1 score: 60.7 bits; conditional E-value: 1.9e-20 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + + ++++vniytDS+Y++ +++ vh++ +++ +s +k+vk T172345_2 366 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASElS--EGKTVNIYTDSQYAFLTLQ--VHGALYKEKGLlNSGGKDVKY 460 68*******99999******766766.557778999****************8844..9**************9555..566644444443888899*** PP .HHHHHHHHHCHCSSEEEEEE-SC CS RNase_H 101 .kelaellkelakkkkvqlkhvkg 123 + + +ll+++ k++kv ++h++g T172345_2 461 *QGILQLLEAVWKPQKVAVMHCRG 484 **********************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.3 9.2e-09 7.5e-05 1 32 [. 573 604 .. 573 604 .. 0.98 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 9.2e-09 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVi 32 H++tHlG++ l++ll +++++l++++++++V+ T172345_2 573 HETTHLGQESLEKLLGQYFYILHLSALAKTVV 604 9****************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 6754.24 // Query: T172345_3 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 6549.57 // Query: T006795_1 [L=1248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 5758.57 // Query: T006795_2 [L=1248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 5409.57 // Query: T006795_3 [L=1247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 5405.23 // Query: T266285_1 [L=3724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.78 # Mc/sec: 13658.63 // Query: T266285_2 [L=3724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-95 318.3 20.5 2.9e-92 309.2 10.8 2.3 2 Transposase_22 L1 transposable element 5.3e-06 25.8 2.1 1.1e-05 24.9 2.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.32 10.8 1.8 0.74 9.7 0.3 2.2 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 2.1 2.2e-06 0.012 35 121 .. 1436 1514 .. 1431 1518 .. 0.78 2 ! 309.2 10.8 5.4e-96 2.9e-92 146 368 .] 1521 1745 .. 1520 1745 .. 0.97 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.2e-06 .XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 35 eeldpdlkdflelriedik...kdfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 e++++++d ++l + +++ k +++elke + ++ ke + +k ++e + v + k+l+elkt +el +++ T266285_2 1436 MEQSWMKNDIDQLTEIGFRr*vKTNFSELKEHVLTHLKEAKsLEKRLDEWLTRINS------------VEKNLKDLMELKTMERELCNTCT 1514 49****************95555*****************9888999985544333............22234678888888888877775 PP == domain 2 score: 309.2 bits; conditional E-value: 5.4e-96 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE.EE CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei.yr 236 +++eer+s +ed+++ei++e k ekr+k+ eq lq+ d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iq i + T266285_2 1521 NQVEERISVIEDQMNEINQEDKCGEKRVKRTEQGLQE-I*DYVKRPNLCLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQKI*K- 1611 699*********************************8.6779**********************************************8666. PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH..HHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre..wtdviqilkekkfqPrllyPaklsiiidGe 327 tP+r++ +ra++rhii+r tkv++k+k+l+a+rek +vt kGkPirltadl aetl+a re t ++ilkek+fqPr++y akls+i++Ge T266285_2 1612 TPQRYSLRRATPRHIIIRCTKVEMKEKMLRAAREKDQVTHKGKPIRLTADLLAETLQAGRE*gLT--FNILKEKNFQPRISYTAKLSFISEGE 1702 9***********************************************************88565..9************************* PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f d ++lrd+++trPal++llke ++er++ryq+l++++ T266285_2 1703 IKSFTDNKMLRDFVTTRPALQELLKEvlNMERNNRYQPLQKHA 1745 ****************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 2.1 1.9e-09 1.1e-05 4 19 .] 3004 3019 .. 3004 3019 .. 0.98 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 1.9e-09 DUF1725 4 gKWMELEnIILSEisQ 19 g+WM+LE+IILS+isQ T266285_2 3004 GTWMKLETIILSKISQ 3019 9**************9 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.3 0.00014 0.74 25 48 .. 1478 1501 .. 1473 1503 .. 0.91 2 ? -1.2 0.1 0.33 1.8e+03 27 42 .. 2078 2093 .. 2077 2098 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00014 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D+ +ri++ Ek+++dlm+ T266285_2 1478 LEKRLDEWLTRINSVEKNLKDLME 1501 568********************7 PP == domain 2 score: -1.2 bits; conditional E-value: 0.33 HSBP1 27 sriDdMssriDdLEks 42 s+iD ++s + +LEk+ T266285_2 2078 SKIDTLTSQLKELEKQ 2093 6888888888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 600 (0.0367963); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.37u 0.41s 00:00:01.78 Elapsed: 00:00:00.72 # Mc/sec: 14796.85 // Query: T266285_3 [L=3724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-20 71.4 0.2 1.2e-19 70.6 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.6 0.2 7.4e-24 1.2e-19 54 193 .. 2343 2492 .. 2334 2515 .. 0.91 Alignments for each domain: == domain 1 score: 70.6 bits; conditional E-value: 7.4e-24 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS RVT_1 54 aveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnell 151 ++++++ ++k+++ +++++++D +kaF +++ ++ l++l++++++ + + +i++++ +++ ++ +ng++ e ++ k+g++q ++lS llfn++++ T266285_3 2343 QINKCNPSIKQTNDKNHMITIDAEKAFKRIQQHFMLKTLNKLGIDGMYLIIIRTIYDKPTDNIILNGQKLEAFPLKTGTRQECPLSSLLFNIVLEVPA 2440 458888999999********************************************************99**************************99 PP TT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 152 relrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 r + ++ ++ tl+++aDD++++ ++ ++q++ + ++++ k+ T266285_3 2441 RAIWQEKaikgiqlgkEEATLSLFADDMIVYLENpIVSAQNHHKLISNFSKS 2492 99988878**************************666699999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 573 (0.0351404); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.65 # Mc/sec: 16390.36 // Query: T351113_1 [L=577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 2797.79 // Query: T351113_2 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2942.57 // Query: T351113_3 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.71 # Mc/sec: 2320.90 // Query: T085622_1 [L=1410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 6612.74 // Query: T085622_2 [L=1410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 6402.81 // Query: T085622_3 [L=1409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-12 44.5 0.0 8.4e-12 44.0 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.0 0.0 5.2e-16 8.4e-12 305 348 .. 632 677 .. 617 712 .. 0.81 Alignments for each domain: == domain 1 score: 44.0 bits; conditional E-value: 5.2e-16 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085622_3 632 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 677 69***************************************96331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 5927.81 // Query: T383688_1 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.76 # Mc/sec: 1900.95 // Query: T383688_2 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 10.9 29.6 0.26 10.5 29.6 1.1 1 CobT Cobalamin biosynthesis protein CobT 0.51 9.6 32.1 0.67 9.2 32.1 1.1 1 DUF1510 Protein of unknown function (DUF1510) 1 9.3 10.0 1.3 8.9 10.0 1.1 1 DDHD DDHD domain 3.3 8.0 13.2 4.6 7.5 13.2 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 3.5 5.8 4.1 5.7 5.1 4.1 1.3 1 FHIPEP FHIPEP family 4.3 7.3 29.0 6.5 6.8 29.0 1.2 1 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 4.5 5.2 30.8 5.5 4.9 30.8 1.0 1 Nop14 Nop14-like family 5.2 6.7 26.5 7 6.3 26.5 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> CobT Cobalamin biosynthesis protein CobT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 29.6 0.00013 0.26 204 264 .. 449 503 .. 416 505 .] 0.44 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00013 CobT 204 aeesaeepeeedeeeeeeeeeeeeeseeeeeegedddeeeqeeaaseeeeeededeesket 264 + +++ e+e+++ eeeeeeeeee+ eee+e++++eeqee+++eee+e++e+ee++++ T383688_2 449 S---EKKREKEKKKMEEEEEEEEEEE---EEEEEEEEQEEQEEEEQEEEQEQQEEEEQEQQ 503 2...2222222222222222222222...22222222233333333333333333222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 32.1 0.00033 0.67 43 102 .. 443 502 .. 424 505 .] 0.63 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00033 DUF1510 43 eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekek 102 +e+++ +e++ ++e++k e++ee+ee+eeee+eee+++ee++++e+eee++++e+ee+e+ T383688_2 443 SEQWQYSEKKREKEKKKMEEEEEEEEEEEEEEEEEEEQEEQEEEEQEEEQEQQEEEEQEQ 502 567777777777777777666666666666666666666666666666665555555554 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 10.0 0.00066 1.3 121 185 .. 443 499 .. 383 505 .] 0.46 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00066 DDHD 121 nrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.e 185 +++ + +e++++k++++++++e+++e+++e++e++++++++++++++++ e+ +ee e T383688_2 443 SEQWQYSEKKREKEKKKMEEEEEEEEEEEEEEEEEEEQEEQEEEEQEEE-------QEQ--QEEeE 499 3333333333333333333333333332222222222222211111111.......111..11111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 13.2 0.0023 4.6 23 69 .. 453 499 .. 414 505 .] 0.46 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0023 RNA_pol_Rpc4 23 aeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkk 69 +e++k++ +++++e++++eee+++e+e+++++ee++e+++e++++++ T383688_2 453 REKEKKKMEEEEEEEEEEEEEEEEEEEQEEQEEEEQEEEQEQQEEEE 499 22222222222222222222222222222222222222222222211 PP >> FHIPEP FHIPEP family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 4.1 0.0028 5.7 292 323 .. 448 485 .. 415 504 .. 0.35 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0028 XXXXXXXXXX...................XXXXXXXXXXXXXX....... CS FHIPEP 292 yllkkkkkke............eeeeekeeeeeeaeeeeeeee......e 323 y+ kk++k++ e ee+eeee e e T383688_2 448 YSEKKREKEKkkmeeeeeeeeeE---------EEEEEEE---EeqeeqeE 485 22222222223333332221110.........1111111...11111221 PP >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 29.0 0.0032 6.5 158 214 .. 451 499 .. 417 504 .. 0.44 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0032 RNA_pol_3_Rpc31 158 kkkeadeedeegksaleklkelaeeeddeeekkekedeeeeeee.eeeeddefdddde 214 kk+ ++e+k+++e+ +e++eee++e e+e+e+ee+ee e+ee++e ++++e T383688_2 451 KKR-----EKEKKKMEEEEEEEEEEEEEE----EEEEEQEEQEEeEQEEEQEQQEEEE 499 222.....222333333333222222221....1111111111111222222222222 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 30.8 0.0027 5.5 347 409 .. 452 500 .. 421 505 .] 0.32 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0027 Nop14 347 eeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedel 409 + e+e++ + eeeee+eeeee+eeeeeee+e++++++++e++e++ee+e T383688_2 452 K-------------REKEKK--KmEEEEEEEEEEEEEEEEEEEQEEQEEEEQEEEQEQQEEEEQ 500 1.............111111..111111111111111111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 26.5 0.0034 7 84 138 .. 449 502 .. 423 505 .] 0.37 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0034 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseee 138 +e+k+++++++++eee+eeeee+e+e+ e++++e++e+ee+e+e+e++++e++e+ T383688_2 449 SEKKREKEKKKMEEEEEEEEEEEEEEE-EEEEQEEQEEEEQEEEQEQQEEEEQEQ 502 222333333333333333333333333.222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2526 (0.154912); expected 326.1 (0.02) Passed bias filter: 948 (0.0581381); expected 326.1 (0.02) Passed Vit filter: 477 (0.029253); expected 16.3 (0.001) Passed Fwd filter: 87 (0.00533546); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.45u 0.45s 00:00:01.90 Elapsed: 00:00:00.84 # Mc/sec: 1719.90 // Query: T383688_3 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2273 (0.139397); expected 326.1 (0.02) Passed bias filter: 603 (0.0369803); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 2448.68 // Query: T246728_1 [L=451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 2529.87 // Query: T246728_2 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-14 52.6 0.1 7e-14 51.3 0.1 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.3 0.1 4.3e-18 7e-14 15 49 .. 269 303 .. 269 306 .. 0.96 Alignments for each domain: == domain 1 score: 51.3 bits; conditional E-value: 4.3e-18 Transposase_1 15 getpkkvpkpelhqkkvmltVwWsakgliyyeflp 49 +e+pk++p+p+ hqkkvm+tVwWsa+gli+y fl T246728_2 269 EEAPKHFPNPNSHQKKVMVTVWWSAAGLIHYRFLR 303 699******************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 2258.55 // Query: T246728_3 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 2475.72 // Query: T342974_1 [L=2297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 9255.39 // Query: T342974_2 [L=2297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.71 # Mc/sec: 9255.39 // Query: T342974_3 [L=2297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 11137.84 // Query: T166066_1 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5144.20 // Query: T166066_2 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 5050.67 // Query: T166066_3 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.087 12.9 0.1 0.087 12.9 0.1 2.7 2 DUF4519 Domain of unknown function (DUF4519) Domain annotation for each model (and alignments): >> DUF4519 Domain of unknown function (DUF4519) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 5.4e-06 0.087 12 38 .. 505 531 .. 502 534 .. 0.95 2 ? 0.6 4.1 0.036 5.9e+02 10 26 .. 609 625 .. 603 627 .. 0.73 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.4e-06 DUF4519 12 trkdKkeRrkenkeaqekvttvVlPvl 38 ++k+KkeR++++k + + +t V+P+l T166066_3 505 SKKKKKERKEKIKCGRAQWLTPVIPAL 531 79***********************98 PP == domain 2 score: 0.6 bits; conditional E-value: 0.036 DUF4519 10 KEtrkdKkeRrkenkea 26 K +++KkeR+k+ ke+ T166066_3 609 KTPSQKKKERKKKKKEN 625 55567888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 4553.88 // Query: T367392_1 [L=2855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 772 (0.0473445); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.40s 00:00:01.99 Elapsed: 00:00:00.75 # Mc/sec: 10890.23 // Query: T367392_2 [L=2855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 456 (0.0279652); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.73 # Mc/sec: 11188.59 // Query: T367392_3 [L=2854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 579 (0.0355084); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.60 # Mc/sec: 13608.01 // Query: T032049_1 [L=8615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.45s 00:00:02.90 Elapsed: 00:00:00.91 # Mc/sec: 27083.57 // Query: T032049_2 [L=8615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.78u 0.48s 00:00:03.26 Elapsed: 00:00:00.95 # Mc/sec: 25943.21 // Query: T032049_3 [L=8615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.59u 0.50s 00:00:03.09 Elapsed: 00:00:01.00 # Mc/sec: 24646.05 // Query: T344060_1 [L=3803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.72 # Mc/sec: 15110.75 // Query: T344060_2 [L=3802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.42s 00:00:01.99 Elapsed: 00:00:00.73 # Mc/sec: 14899.83 // Query: T344060_3 [L=3802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.73 # Mc/sec: 14899.83 // Query: T196649_1 [L=906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.66 9.6 10.0 0.59 9.8 5.7 2.4 2 Ephrin_rec_like Putative ephrin-receptor like Domain annotation for each model (and alignments): >> Ephrin_rec_like Putative ephrin-receptor like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.4 0.011 1.8e+02 11 21 .. 582 592 .. 578 598 .. 0.66 2 ? 9.8 5.7 3.6e-05 0.59 5 40 .. 592 630 .. 588 636 .. 0.75 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.011 Ephrin_rec_like 11 CipCprgtYqn 21 C Cp g++ + T196649_1 582 CLRCPAGHFCP 592 66666666655 PP == domain 2 score: 9.8 bits; conditional E-value: 3.6e-05 Ephrin_rec_like 5 ntgletCipCprgtYqn...eegqlsClaCPlgtttkkp 40 ++ + + ipC+ gt+ + + ++C++CP+g+ ++ T196649_1 592 PNRATRPIPCQPGTFGPrlgQDEATDCTPCPAGRACTQA 630 55566669*********555556689*****99876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.64 # Mc/sec: 4049.86 // Query: T196649_2 [L=906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.64 # Mc/sec: 4049.86 // Query: T196649_3 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 4109.60 // Query: T282635_1 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.51 # Mc/sec: 1374.32 // Query: T282635_2 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-08 35.0 2.2 3.4e-08 34.2 2.2 1.4 1 TGF_beta Transforming growth factor beta like domain Domain annotation for each model (and alignments): >> TGF_beta Transforming growth factor beta like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 2.2 2.1e-12 3.4e-08 2 83 .. 168 243 .. 167 245 .] 0.72 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 2.1e-12 TGF_beta 2 eCrlrelyvsfkdlgwddwiiaPkgyeanyCsGsClskeakaeksatnhavlqslvkelkpekkvpkpcCvPtklsslslly 83 C+l++ +v++++ w ++i+aPk+++++yC+G+C + ++e ++++ ++ ++ p+ ++C+Pt ++ +sl+ T282635_2 168 LCHLQDRKVNLHRAAWGECIVAPKTLSFSYCQGTC--PALNSELRHSSFECYKRA----VPTCPWLFQTCRPTMVRLFSLMV 243 6**********************************..333333333444444433....33223447889999888888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 1046.12 // Query: T282635_3 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.44 # Mc/sec: 1586.46 // Query: T183860_1 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.63 # Mc/sec: 3532.90 // Query: T183860_2 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 3477.70 // Query: T183860_3 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 3273.13 // Query: T321293_1 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 4321.90 // Query: T321293_2 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 3667.06 // Query: T321293_3 [L=845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 3662.73 // Query: T277653_1 [L=5960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.43s 00:00:02.39 Elapsed: 00:00:00.86 # Mc/sec: 19826.22 // Query: T277653_2 [L=5960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.86 # Mc/sec: 19826.22 // Query: T277653_3 [L=5960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.38s 00:00:02.25 Elapsed: 00:00:00.83 # Mc/sec: 20542.83 // Query: T314393_1 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 2810.88 // Query: T314393_2 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.05 13.4 0.0 0.092 12.6 0.0 1.3 1 IQ_SEC7_PH PH domain Domain annotation for each model (and alignments): >> IQ_SEC7_PH PH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 5.6e-06 0.092 32 75 .. 190 229 .. 185 237 .. 0.80 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.6e-06 IQ_SEC7_PH 32 lhqrevflFndlllvtklvkkkktsvtysyrksvtLlglkvslf 75 +r++flF d l+++k +++s++y ++++++L+g++ + T314393_2 190 TTRRHLFLFRDWLVIAK----QRSSKSYRVEQKLHLSGVQAVTC 229 5689**********855....56666899*********997765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 3001.45 // Query: T314393_3 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 2951.42 // Query: T021943_1 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.65 # Mc/sec: 2513.13 // Query: T021943_2 [L=570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 2763.85 // Query: T021943_3 [L=570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 2588.37 // Query: T219160_1 [L=1257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 5532.41 // Query: T219160_2 [L=1257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 5895.19 // Query: T219160_3 [L=1256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 5614.38 // Query: T222011_1 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 554 (0.0339752); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 10775.79 // Query: T222011_2 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:00.77 # Mc/sec: 10076.07 // Query: T222011_3 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 10624.26 // Query: T120599_1 [L=1301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 877 (0.0537839); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.40s 00:00:01.73 Elapsed: 00:00:00.81 # Mc/sec: 4594.99 // Query: T120599_2 [L=1301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 940 (0.0576475); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.41s 00:00:01.56 Elapsed: 00:00:00.79 # Mc/sec: 4711.32 // Query: T120599_3 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 5550.86 // Query: T182902_1 [L=5459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.39s 00:00:02.13 Elapsed: 00:00:00.82 # Mc/sec: 19045.45 // Query: T182902_2 [L=5459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.82 # Mc/sec: 19045.45 // Query: T182902_3 [L=5459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.37s 00:00:02.17 Elapsed: 00:00:00.76 # Mc/sec: 20549.04 // Query: T259550_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7332.03 // Query: T259550_2 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.64 # Mc/sec: 7102.90 // Query: T259550_3 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 6680.88 // Query: T067412_1 [L=3309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.81 # Mc/sec: 11687.02 // Query: T067412_2 [L=3309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.53 # Mc/sec: 17861.30 // Query: T067412_3 [L=3309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0025 17.3 0.2 0.0054 16.2 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.2 3.3e-07 0.0054 2 17 .. 3172 3187 .. 3172 3187 .. 0.98 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 3.3e-07 DUF1725 2 FagKWMELEnIILSEi 17 Fa++WM E+IILSEi T067412_3 3172 FATTWMNPEDIILSEI 3187 9**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 16904.44 // Query: T029814_1 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 3410.99 // Query: T029814_2 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 3346.63 // Query: T029814_3 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3613.99 // Query: T195966_1 [L=2733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 13480.43 // Query: T195966_2 [L=2732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 305 (0.0187048); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.54 # Mc/sec: 14473.68 // Query: T195966_3 [L=2732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 11008.15 // Query: T316019_1 [L=1255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.40s 00:00:01.72 Elapsed: 00:00:00.75 # Mc/sec: 4787.12 // Query: T316019_2 [L=1254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 566 (0.0347111); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 5786.26 // Query: T316019_3 [L=1254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.4 8.0 5.5 6.4 7.1 3.3 2.7 2 COX17 Cytochrome C oxidase copper chaperone (COX17) Domain annotation for each model (and alignments): >> COX17 Cytochrome C oxidase copper chaperone (COX17) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 3.3 0.00039 6.4 3 40 .. 1001 1041 .. 999 1050 .. 0.84 2 ? -1.3 0.0 0.16 2.7e+03 34 46 .. 1050 1062 .. 1045 1063 .. 0.82 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00039 COX17 3 lKpCCaCpetKkaRDeCilesgaeee....kCkelieahkaC 40 + p C+C +t ++ +C+ ++++++ +C i+ah++C T316019_3 1001 PTPSCVCTHTHSNTHQCLPLHTSSHThttsHCP-HIHAHTQC 1041 5689**************999866667787886.699****9 PP == domain 2 score: -1.3 bits; conditional E-value: 0.16 COX17 34 ieahkaCmrslGF 46 + h+aC+ + F T316019_3 1050 THTHNACLSAHSF 1062 578*****99988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 637 (0.0390654); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 4914.36 // Query: T130808_1 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 2825.07 // Query: T130808_2 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.59 # Mc/sec: 2676.57 // Query: T130808_3 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 2588.82 // Query: T267284_1 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-40 139.2 0.2 2.2e-40 138.7 0.2 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) 6.6e-19 68.1 0.0 1.1e-18 67.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.025 14.3 0.0 0.045 13.5 0.0 1.3 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 0.074 12.6 0.3 0.14 11.7 0.3 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.7 0.2 5.5e-44 2.2e-40 372 560 .. 841 1021 .. 821 1022 .. 0.94 Alignments for each domain: == domain 1 score: 138.7 bits; conditional E-value: 5.5e-44 XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 372 dislisgeyiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlL 468 +++++ ++ +y++ p++ +kR + + + +G g+ + +gtG+ g+ stq + kL+++l+ D++ + +s + l+++l la vvlQN R LDlL T267284_1 841 PMTIYTEQDLYNYVVPKPCTKR----VPILPFVTGAGVLGRLGTGIGGItTSTQFYYKLSQELNGDMEWVANSPVTLQDQLNFLAAVVLQNQRVLDLL 934 4566666669************....8899999****************999********************************************** PP TGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 469 fleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqli 560 ++e+G C+ L EeC +y+++sgiv ++++++++r+++r +l++ w + l w++++l gpL++++L+Ll+GPci+n Lv+++ T267284_1 935 TAERGETCLFLGEECSYYVNQSGIVTEKVKEIRDRIQRRAEELQNTRPW-DLLSQWVSWILPFL----GPLAVIILLLLFGPCIFNLLVKFV 1021 ********************************************99998.99999999999999....***********************8 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 0.0 2.6e-22 1.1e-18 85 209 .. 363 487 .. 356 489 .. 0.95 Alignments for each domain: == domain 1 score: 67.5 bits; conditional E-value: 2.6e-22 Gag_p30 85 eafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkkl 184 +a p p+wd e+ +g + +l glr + ++p n + + +++qgkee+p+aflerl+ea r++t p + e + + f++q a+dirkkl T267284_1 363 QAVPSVDPHWDTESEHGDWCRRHLLTCVLEGLRKTRKKPMNYSMMSTITQGKEENPTAFLERLREALRKHTSLSPVSIEGQLILKDKFVTQPAADIRKKL 462 6889999**********99888889999************************************************************************ PP Gag_p30 185 qrleglqeatlkdlvkeaekvynkr 209 q+ e++l+ l++ a v++ r T267284_1 463 QKSALGPEQNLETLLNLATSVFYNR 487 **999999************99986 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 1.1e-05 0.045 104 151 .. 387 434 .. 359 446 .. 0.89 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.1e-05 Gag_p24 104 rrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkela 151 + +l +l+k ++ + + +++i QG++E +f +Rl +alrk + T267284_1 387 LTCVLEGLRKTRKKPMNYSMMSTITQGKEENPTAFLERLREALRKHTS 434 56788999999999999999************************9765 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.3 3.6e-05 0.14 32 91 .. 128 189 .. 106 215 .. 0.77 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 3.6e-05 HH.HHHHHHTTGG....GGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS CS Gag_MA 32 kk.litlCsseWp....tlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLved 91 kk li +Cs+ Wp WP++G+ + ++i+++ +f++ keG vpY+ t+ sL + T267284_1 128 KK*LIFFCSTAWP*yplQGRETWPPQGSINYNTILQLD--LFCR-KEGKWSEVPYVQTFFSLRDN 189 5557899*****8884333467************9986..7888.89999********9988766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.69 # Mc/sec: 11352.11 // Query: T267284_2 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 85 (0.00521281); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.35s 00:00:01.48 Elapsed: 00:00:00.77 # Mc/sec: 10172.67 // Query: T267284_3 [L=2737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-05 25.5 0.0 1.9e-05 24.7 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.41 10.7 6.4 0.045 13.7 1.0 2.4 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 2.3e-09 1.9e-05 4 100 .. 604 695 .. 601 696 .. 0.88 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 2.3e-09 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEE.TTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievll.ieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P + + i+g+ ++ llDtG +v+ + P++ +++++++G++g+ t+ + + + f++ +li+pe+p +llGrd+L k g+ + T267284_3 604 EPQVCLTIEGQEVNCLLDTGTAFSVLL--SCPGQ--LSSRSVTIRGVLGRPVTRYFPQPLSCD*RPLLFSH--AFLIMPESPTPLLGRDILAKAGAII 695 79999********************97..57888..77************988888884444455889999..*******************999876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 1.0 5.5e-06 0.045 2 18 .] 531 547 .. 530 547 .. 0.93 2 ? -2.9 0.4 1 8.1e+03 10 16 .. 1230 1236 .. 1230 1236 .. 0.97 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 5.5e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+ C GH++rdCp+ T267284_3 531 ACFQCALQGHFKRDCPN 547 7***************6 PP == domain 2 score: -2.9 bits; conditional E-value: 1 SSTTTTS CS zf-CCHC 10 GHiardC 16 GH +dC T267284_3 1230 GHSMSDC 1236 9****** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 11028.30 // Query: T375501_1 [L=726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-10 38.6 0.0 1e-09 38.0 0.0 1.2 1 dUTPase dUTPase 8.5e-06 25.8 0.0 1.4e-05 25.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.0 0.0 1.3e-13 1e-09 12 122 .. 427 536 .. 417 543 .. 0.86 Alignments for each domain: == domain 1 score: 38.0 bits; conditional E-value: 1.3e-13 T-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEE CS dUTPase 12 esAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaelee 111 sAg+++ +++ ++pg+ +++p++ + lp+g+ +l+lp S a+kg+ v++gvid+dy+ e ++ + n++kk+ ++gd + L++ + +++ T375501_1 427 LSAGLEVLVPEGGRLPPGD-TMIPLNWKPRLPHGHFGLLLPLSQQAKKGVKVLTGVIDRDYQDETSLLFHNRGKKEYAWNAGDSLGCLLVLPFRVTKVNG 525 6899*******99999986.579************************************************************99999998877756665 PP ESSTTTESSBT CS dUTPase 112 vetlkaterge 122 + + +++r + T375501_1 526 KLQQAQSNRTT 536 55555555555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.0 1.7e-09 1.4e-05 19 118 .. 258 353 .. 252 354 .. 0.88 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 1.7e-09 rve 19 dgggkayllvviddfsrlilaeav.sdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++g+ ++l+ id++s + +a++ ++ t+++l+e+ + r g p + sD+ + + +k++++++ + i++ ++ p ++nG+vE n++lk T375501_1 258 LWKGQRFVLTGIDTYSSYGFAYPA*NAS-AKTTICGLTECLIHRPGT--PHSIASDQDTHFMAKEVQQWAPPHEIHWPYHVP--HHENGLVEWWNGLLKS 352 456679999************9988777.778888888888888888..*********************************..689***********97 PP rve 118 e 118 + T375501_1 353 Q 353 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.66 # Mc/sec: 3146.91 // Query: T375501_2 [L=726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.67 # Mc/sec: 3099.94 // Query: T375501_3 [L=726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 3776.30 // Query: T236380_1 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1266 (0.0776401); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.42s 00:00:02.06 Elapsed: 00:00:00.92 # Mc/sec: 2089.65 // Query: T236380_2 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1221 (0.0748804); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.44s 00:00:02.41 Elapsed: 00:00:00.89 # Mc/sec: 2160.09 // Query: T236380_3 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1382 (0.0847541); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.47s 00:00:02.17 Elapsed: 00:00:00.82 # Mc/sec: 2344.49 // Query: T363336_1 [L=570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-16 60.9 3.0 2e-08 33.9 1.1 2.2 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.0 1.8e-10 2.9e-06 2 29 .. 15 42 .. 14 48 .. 0.91 2 ! 33.9 1.1 1.2e-12 2e-08 185 227 .. 189 231 .. 184 235 .. 0.92 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 1.8e-10 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRka kDe+v ++f++t++P T363336_1 15 ETAWRQGKRKAKKDEMVNSSFFLTLSPP 42 789***********************75 PP == domain 2 score: 33.9 bits; conditional E-value: 1.2e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaek 227 + is ++aei+hfh +++++ s+mq++L+q + f+qk++ + T363336_1 189 NRISLDTVAEIHHFHPIQVRNMDSQMQHFLQQEILFFQKVTRE 231 679999**********************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 2508.73 // Query: T363336_2 [L=570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 2470.72 // Query: T363336_3 [L=569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-16 58.3 0.0 1.9e-14 53.6 0.0 2.0 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.5 0.0 0.0048 78 37 55 .. 50 68 .. 33 76 .. 0.84 2 ! 53.6 0.0 1.1e-18 1.9e-14 110 174 .. 114 178 .. 109 188 .. 0.93 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.0048 BAR_3_WASP_bdg 37 eveqkveafkkftkkmdes 55 e e+k++ f+ ftkk+d+ T363336_3 50 EWENKIDGFECFTKKIDNR 68 569**************85 PP == domain 2 score: 53.6 bits; conditional E-value: 1.1e-18 BAR_3_WASP_bdg 110 tgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklss 174 t ++++++ge+fa+qp ++ ++++++l +G+ an+PDii++hk+al+kv es ++v+egk + T363336_3 114 TRDAFNTVGEFFANQPSQEWDPVMDLLVLSQGHQANIPDIIHIHKEALTKVTESRQHVAEGKTEV 178 66899*******************************************************98764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2466.38 // Query: T244050_1 [L=1213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-26 91.7 7.3 2.1e-16 59.6 4.8 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 4.8 1.3e-20 2.1e-16 8 69 .. 409 468 .. 403 469 .. 0.94 2 ! 32.2 0.0 2.8e-12 4.6e-08 176 208 .. 542 575 .. 534 578 .. 0.84 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 1.3e-20 .XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 8 tnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskak 69 rk +nsk +++s+P+ke+sssPat e++++++df+el +e+++++++++lke+++++ak T244050_1 409 HSRKAENSKNQSASPPPKERSSSPAT--EQSWMENDFDELGEEGFRRSNFSKLKEEVQTHAK 468 48************************..********************************99 PP == domain 2 score: 32.2 bits; conditional E-value: 2.8e-12 HH.HHHHHHHHHHTTTEEEEES----TT--HHHH CS Transposase_22 176 le.qslqviqdtvkrPnlrliGvdesedeqlkkl 208 ++ qsl +i+d+vkrPnlrliGv+es+ e++ ++ T244050_1 542 NK*QSLEEIWDYVKRPNLRLIGVPESDGENGMEP 575 4569*************************99876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 5983.08 // Query: T244050_2 [L=1212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.47 # Mc/sec: 7377.29 // Query: T244050_3 [L=1212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-92 310.0 25.4 1e-87 294.3 5.3 2.5 3 Transposase_22 L1 transposable element 3.2e-07 30.5 0.0 6.9e-07 29.4 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.016 15.6 1.4 0.016 15.6 1.4 3.4 3 Syntaxin-6_N Syntaxin 6, N-terminal 0.041 14.0 0.5 0.041 14.0 0.5 2.9 2 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.21 11.9 0.1 0.21 11.9 0.1 2.3 2 ZapA Cell division protein ZapA 1.6 8.6 7.1 1.3 8.9 0.2 3.3 3 HSBP1 Heat shock factor binding protein 1 2.4 8.4 11.5 0.52 10.5 0.7 3.2 3 BLOC1_2 Biogenesis of lysosome-related organelles com 4.6 7.6 5.4 15 6.0 0.1 3.1 3 NPV_P10 Nucleopolyhedrovirus P10 protein 5.7 7.3 12.0 11 6.3 0.0 4.4 4 FlaC_arch Flagella accessory protein C (FlaC) 7.6 6.4 8.3 4.2 7.2 0.4 3.2 3 DUF1664 Protein of unknown function (DUF1664) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 2.2 8e-11 1.3e-07 81 166 .. 452 535 .. 446 538 .. 0.90 2 ! 294.3 5.3 6.3e-91 1e-87 204 368 .] 572 738 .. 569 738 .. 0.99 3 ? -5.3 2.5 7.2 1.2e+04 70 96 .. 1062 1092 .. 1024 1129 .. 0.47 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 8e-11 XXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 81 tekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrev 166 t k l+ k n k+v +++k l e t++ + k s +e++t ++ +s+ssr d+leervs +ed+++e+++ev T244050_3 452 TIKLLQ-AKGGSSNPRKEVKNLEKRLDEWLTRITSVEKSLS-DLMELKTTAQELCDECTSFSSRFDQLEERVSVMEDHMNEMNQEV 535 455555.566678999************************9.889*************************************9986 PP == domain 2 score: 294.3 bits; conditional E-value: 6.3e-91 -HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHH CS Transposase_22 204 qlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrew 298 ++ len+l++ii+enfPnl+++an++iqei+rtP+r++s+ra++rhiivr+tkv++k+kil+a+rekGrvt kGkPirlta+lsaetl+arrew T244050_3 572 NGATLENTLKDIIQENFPNLARQANIQIQEIHRTPQRYSSRRATPRHIIVRFTKVEMKEKILRAAREKGRVTHKGKPIRLTAELSAETLQARREW 666 7899******************************************************************************************* PP HHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 299 tdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 +++++ilkek+fqPr++y akls+i++Geik f dk++lrd+++trPal++llke ++er+++yq+l++++ T244050_3 667 GPIFNILKEKNFQPRISYAAKLSFISKGEIKSFTDKQMLRDFVTTRPALQELLKEalNMERNKQYQPLQKHA 738 *********************************************************************996 PP == domain 3 score: -5.3 bits; conditional E-value: 7.2 XXXXXXXXXX......XXXXXXX.......... CS Transposase_22 70 elealkekee......ntekqlkiikekqents 96 l+a k k+e t + + ekqe+t T244050_3 1062 ALNAHKRKQErskidtLTSQLTE--LEKQEQTH 1092 34466666665555432333333..44555442 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 0.0 4.2e-10 6.9e-07 1 96 [. 773 973 .. 773 991 .. 0.83 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 4.2e-10 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + + + ++++ gva+l++ + + + T244050_3 773 LTLNVNG----LNAPIKRHRLASWIKSQDPSVCCIQETHLMCRDTHRLKIkaWRKICQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimvkg 864 699****....7778899*******************99877766666666644555566777889999999999966667889999999999999 PP .....................................EEEEEE-SS.................................................. CS .....................................xxxxxxxxx.................................................. RF Exo_endo_phos 78 .....................................vivlGDfNa.................................................. 86 +i++G fN+ T244050_3 865 siqqeeltilniyapntgaprfikqvlrdlerdldshIIITGAFNTplstldrsmrqevnkdiqelnsalhqvdlidiyrtvhpkltkytffsahh 960 99999*****************************************99988888888888888888888888888877777777777777777777 PP ...-BEEEEEEHH CS ...xxxxxxxxxx RF Exo_endo_phos 87 ...rlDrilaske 96 +D+i+ sk+ T244050_3 961 tysKIDHIVGSKA 973 7777788888874 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.6 1.4 9.9e-06 0.016 12 72 .. 467 529 .. 464 535 .. 0.91 2 ? -1.2 0.0 1.7 2.7e+03 6 23 .. 919 936 .. 890 964 .. 0.72 3 ? -1.6 2.2 2.2 3.6e+03 18 48 .. 1076 1110 .. 1064 1117 .. 0.49 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 9.9e-06 Syntaxin-6_N 12 kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknps 72 k++++le+ +++w +++ ++++s s el+ t +eL ++ s + ++Lee v+++e + + T244050_3 467 KEVKNLEKRLDEWlTRITSVEKSlSDLMELKTTAQELCDECTSFSSRFDQLEERVSVMEDHMN 529 78999********6699999999999*******************************998755 PP == domain 2 score: -1.2 bits; conditional E-value: 1.7 Syntaxin-6_N 6 vkeeVqkslnkleslyrr 23 +++eV+k +++l+s +++ T244050_3 919 MRQEVNKDIQELNSALHQ 936 445555555555554444 PP == domain 3 score: -1.6 bits; conditional E-value: 2.2 Syntaxin-6_N 18 eslyrrweelledtsss....tseeldetrteLrk 48 +l ++++el ++++++ +++e+ + r eL++ T244050_3 1076 DTLTSQLTELEKQEQTH*kanRRQEITKIRAELKE 1110 34444444444444442223344444444444443 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.5 2.5e-05 0.041 36 102 .. 467 533 .. 464 535 .. 0.95 2 ? -3.8 4.8 8.6 1.4e+04 67 83 .. 1099 1115 .. 1058 1124 .. 0.46 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.5e-05 HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC CS Seryl_tRNA_N 36 ekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklll 102 ++ ++l+++l+e ++ ++ k+ + +++ k a+el +e + + ++++le++++ +e+ ++++ + T244050_3 467 KEVKNLEKRLDEWLTRITSVEKSLSDLMELKTTAQELCDECTSFSSRFDQLEERVSVMEDHMNEMNQ 533 7899*********************************************************999865 PP == domain 2 score: -3.8 bits; conditional E-value: 8.6 S-TCCCCCCCHHHHHHH CS Seryl_tRNA_N 67 edaeeliaevkelkeel 83 +++++++ae ke++++ T244050_3 1099 QEITKIRAELKEIQTQK 1115 44444444444444443 PP >> ZapA Cell division protein ZapA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 0.00013 0.21 19 87 .. 466 534 .. 460 535 .. 0.93 2 ? -3.4 1.0 7.6 1.2e+04 76 86 .. 1077 1087 .. 1062 1113 .. 0.54 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00013 ZapA 19 eeylreaaklvdekikeireaggnlseerllvmaaLnladellklkkraeeleaeleelaerleelaer 87 ++++++++k++de +++i++ ++ls+ + l +a l+de+++ r ++le+ + +++ ++e++++ T244050_3 466 RKEVKNLEKRLDEWLTRITSVEKSLSDLMELKTTAQELCDECTSFSSRFDQLEERVSVMEDHMNEMNQE 534 67899********************************************99999999999999999987 PP == domain 2 score: -3.4 bits; conditional E-value: 7.6 ZapA 76 elaerleelae 86 +l+++l el++ T244050_3 1077 TLTSQLTELEK 1087 33344444333 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 0.2 0.00078 1.3 25 48 .. 472 495 .. 470 498 .. 0.90 2 ? 0.9 0.2 0.25 4.1e+02 27 43 .. 512 528 .. 501 534 .. 0.57 3 ? 0.0 0.1 0.46 7.5e+02 27 42 .. 1073 1088 .. 1071 1090 .. 0.67 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00078 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D+ +ri + Eks++dlm+ T244050_3 472 LEKRLDEWLTRITSVEKSLSDLME 495 558********************7 PP == domain 2 score: 0.9 bits; conditional E-value: 0.25 HSBP1 27 sriDdMssriDdLEksi 43 sr D++++r+ +E ++ T244050_3 512 SRFDQLEERVSVMEDHM 528 34444444444444444 PP == domain 3 score: 0.0 bits; conditional E-value: 0.46 HSBP1 27 sriDdMssriDdLEks 42 s+iD ++s + +LEk+ T244050_3 1073 SKIDTLTSQLTELEKQ 1088 5677777777777764 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.7 0.00032 0.52 30 91 .. 470 531 .. 464 535 .. 0.79 2 ? -1.8 0.1 2.3 3.7e+03 51 71 .. 921 941 .. 912 942 .. 0.72 3 ? 3.7 0.9 0.044 71 20 79 .. 1029 1087 .. 1024 1090 .. 0.81 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00032 BLOC1_2 30 kaasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeL 91 k+ +++ +++ + + s+ek+l++l e++ + q+++++ + + ++Lee vs+++ + e+ T244050_3 470 KNLEKRLDEWLTRITSVEKSLSDLMELKTTAQELCDECTSFSSRFDQLEERVSVMEDHMNEM 531 56667778888888888999999999888888888888888888888888888888777665 PP == domain 2 score: -1.8 bits; conditional E-value: 2.3 BLOC1_2 51 eklnekyeelqpylqqidqie 71 +++n+ +el++ l q+d i+ T244050_3 921 QEVNKDIQELNSALHQVDLID 941 456666778888888888776 PP == domain 3 score: 3.7 bits; conditional E-value: 0.044 BLOC1_2 20 edyklLekmNkaasekykklkdvaasl.ekeleklnekyeelqpylqqidqiekqvteLee 79 +++k+ + N++ + y++l d + + + ++ +ln+ ++ ++ ++id + q+teLe+ T244050_3 1029 AEIKMFFETNENKDTTYQNLWDTFKAVcRGKFVALNA--HKRKQERSKIDTLTSQLTELEK 1087 6778888899999999999998888762457778887..7778899999999999999997 PP >> NPV_P10 Nucleopolyhedrovirus P10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.1 0.0091 15 10 59 .. 466 515 .. 465 534 .. 0.70 2 ? -2.4 0.1 3.9 6.3e+03 35 52 .. 925 935 .. 908 942 .. 0.55 3 ? 2.6 0.3 0.11 1.7e+02 41 61 .. 1072 1104 .. 1061 1119 .. 0.68 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0091 NPV_P10 10 radikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 r+++k++++++d +++++v++ l d+ el++ +++ ++ +++++ + T244050_3 466 RKEVKNLEKRLDEWLTRITSVEKSLSDLMELKTTAQELCDECTSFSSRFD 515 67788888888888888888888888888888777777666666655433 PP == domain 2 score: -2.4 bits; conditional E-value: 3.9 NPV_P10 35 pdvtelnekLdaqsaqLa 52 +d++eln+ L + T244050_3 925 KDIQELNSAL-------H 935 3333333333.......2 PP == domain 3 score: 2.6 bits; conditional E-value: 0.11 NPV_P10 41 nekLdaqsaqLaelet............kvenI 61 +k+d ++ qL+ele+ ++++I T244050_3 1072 RSKIDTLTSQLTELEKqeqth*kanrrqEITKI 1104 578999999999998866666666655544444 PP >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.2 0.025 40 2 27 .. 469 494 .. 468 505 .. 0.82 2 ? 1.2 0.3 0.27 4.4e+02 8 37 .. 506 535 .. 500 539 .. 0.76 3 ? 6.3 0.0 0.007 11 15 47 .. 911 946 .. 893 949 .. 0.84 4 ? -1.3 0.5 1.6 2.7e+03 15 26 .. 1100 1111 .. 1070 1117 .. 0.51 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.025 FlaC_arch 2 idelEnklsklsteletvkkeneels 27 +++lE++l++ t++++v+k++++l T244050_3 469 VKNLEKRLDEWLTRITSVEKSLSDLM 494 68899999999999999999888764 PP == domain 2 score: 1.2 bits; conditional E-value: 0.27 FlaC_arch 8 klsklsteletvkkeneelsksveeleenV 37 + ++s++++ +++ + +++ +e++++V T244050_3 506 ECTSFSSRFDQLEERVSVMEDHMNEMNQEV 535 666778888888888888888888888887 PP == domain 3 score: 6.3 bits; conditional E-value: 0.007 FlaC_arch 15 eletvkken.eelsksveeleenV..kdllsLYEvV 47 l+t+ +++ +e++k+++el+ dl+++Y +V T244050_3 911 PLSTLDRSMrQEVNKDIQELNSALhqVDLIDIYRTV 946 567775554389************9889*****988 PP == domain 4 score: -1.3 bits; conditional E-value: 1.6 FlaC_arch 15 eletvkkeneel 26 e++ +++e++e+ T244050_3 1100 EITKIRAELKEI 1111 444444444444 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.4 0.0026 4.2 66 120 .. 481 531 .. 457 535 .. 0.51 2 ? -0.0 0.0 0.46 7.5e+02 65 113 .. 888 937 .. 881 940 .. 0.77 3 ? 1.5 0.8 0.16 2.5e+02 60 102 .. 1067 1114 .. 1033 1124 .. 0.74 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 DUF1664 66 qridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 ri +v+k+l + +e+++ +e+ ++ +++++ +++++e v+ +e +++e+ T244050_3 481 TRITSVEKSLSDLMELKTTA----QELCDECTSFSSRFDQLEERVSVMEDHMNEM 531 34444444444444433322....2344444555555555555555555555554 PP == domain 2 score: -0.0 bits; conditional E-value: 0.46 DUF1664 65 sqridrvdkkldeqkeiskeikeevtevredl.seikedvesvkeavegL 113 +q + ++++ ld+ + i+ + + ++++ +++ +e+++d++++++a++++ T244050_3 888 KQVLRDLERDLDSHIIITGAFNTPLSTLDRSMrQEVNKDIQELNSALHQV 937 56677888889999999999999999988777246888999988888776 PP == domain 3 score: 1.5 bits; conditional E-value: 0.16 DUF1664 60 tkrhLsqridrvdkkldeqkeisk.....eikeevtevredlseiked 102 +++ ++id++ ++l e ++ + + ++e+t++r +l+ei+++ T244050_3 1067 KRKQERSKIDTLTSQLTELEKQEQth*kaNRRQEITKIRAELKEIQTQ 1114 34555789999999988776654411222679999****999999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 827 (0.0507175); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.83 # Mc/sec: 4177.50 // Query: T216196_1 [L=2122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.57 # Mc/sec: 10466.69 // Query: T216196_2 [L=2122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.42s 00:00:01.57 Elapsed: 00:00:00.75 # Mc/sec: 8094.24 // Query: T216196_3 [L=2122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 347 (0.0212805); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.41s 00:00:01.61 Elapsed: 00:00:00.76 # Mc/sec: 7987.74 // Query: T321990_1 [L=308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 705 (0.0432356); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 1355.59 // Query: T321990_2 [L=307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 790 (0.0484484); expected 326.1 (0.02) Passed bias filter: 289 (0.0177235); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 1394.09 // Query: T321990_3 [L=307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 1351.19 // Query: T124707_1 [L=423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 1983.82 // Query: T124707_2 [L=423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 1951.82 // Query: T124707_3 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 2081.50 // Query: T291135_1 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-45 155.7 2.5 1.7e-45 155.1 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0018 18.0 3.1 0.0021 17.8 1.0 2.1 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.1 2.5 2.1e-49 1.7e-45 1 222 [] 2684 2940 .. 2684 2940 .. 0.92 Alignments for each domain: == domain 1 score: 155.1 bits; conditional E-value: 2.1e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291135_1 2684 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 2781 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291135_1 2782 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 2879 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291135_1 2880 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2940 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 0.24 2e+03 16 28 .. 180 192 .. 179 192 .. 0.92 2 ! 17.8 1.0 2.6e-07 0.0021 25 48 .. 1763 1786 .. 1760 1789 .. 0.90 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.24 HSBP1 16 dkFqtmsdqilsr 28 kFq+ s++il+r T291135_1 180 AKFQKTSHEILQR 192 59*********97 PP == domain 2 score: 17.8 bits; conditional E-value: 2.6e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291135_1 1763 LEKRLDKMLTRITSLEKNINDLMQ 1786 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 541 (0.033178); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.71 # Mc/sec: 13151.76 // Query: T291135_2 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.74 # Mc/sec: 12618.58 // Query: T291135_3 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.75 # Mc/sec: 12450.33 // Query: T158670_1 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.80 # Mc/sec: 5979.13 // Query: T158670_2 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 7247.44 // Query: T158670_3 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8541.62 // Query: T155839_1 [L=3540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.39s 00:00:01.86 Elapsed: 00:00:00.84 # Mc/sec: 12056.35 // Query: T155839_2 [L=3540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.77 # Mc/sec: 13152.39 // Query: T155839_3 [L=3540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.63 # Mc/sec: 16075.14 // Query: T322062_1 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-31 106.3 247.5 2.2e-14 53.2 12.6 22.5 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.7 0.045 7.3e+02 7 33 .. 845 870 .. 832 873 .. 0.66 2 ! 31.0 5.2 1.2e-11 2e-07 3 49 .. 873 918 .. 871 919 .. 0.96 3 ! 7.5 3.7 0.00027 4.4 28 47 .. 918 937 .. 918 941 .. 0.89 4 ? 1.1 1.3 0.027 4.3e+02 34 49 .. 945 960 .. 939 961 .. 0.88 5 ? -13.6 23.0 1 1.6e+04 8 31 .. 983 1043 .. 961 1064 .. 0.57 6 ? 1.3 7.5 0.023 3.8e+02 6 46 .. 1049 1081 .. 1043 1084 .. 0.56 7 ! 33.4 11.6 2.2e-12 3.5e-08 2 50 .] 1070 1118 .. 1069 1118 .. 0.89 8 ! 9.1 4.0 8.2e-05 1.3 29 50 .] 1118 1139 .. 1117 1139 .. 0.94 9 ! 18.2 2.3 1.2e-07 0.0019 17 50 .] 1139 1172 .. 1139 1172 .. 0.95 10 ! 53.2 12.6 1.4e-18 2.2e-14 1 50 [] 1177 1224 .. 1177 1224 .. 0.99 11 ! 11.8 19.6 1.2e-05 0.2 2 49 .. 1255 1314 .. 1254 1315 .. 0.79 12 ? -1.6 0.1 0.19 3e+03 32 46 .. 1393 1411 .. 1382 1412 .. 0.80 13 ? 1.4 9.0 0.022 3.5e+02 2 27 .. 1467 1492 .. 1466 1518 .. 0.69 14 ! 4.7 19.9 0.0019 31 9 46 .. 1496 1577 .. 1489 1580 .. 0.68 15 ? -1.7 10.9 0.19 3.1e+03 9 27 .. 1583 1600 .. 1582 1633 .. 0.69 16 ? -1.8 2.0 0.21 3.5e+03 7 22 .. 1634 1648 .. 1632 1661 .. 0.59 17 ! 17.1 15.5 2.6e-07 0.0042 1 39 [. 1662 1744 .. 1662 1759 .. 0.96 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.045 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAs 33 s rp q + ++ ++gl rp+ L++ s T322062_1 845 SSRPPQ-TKLMTHNGLFRPIPYLTAVS 870 456666.77777777777777777655 PP == domain 2 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322062_1 873 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 918 689*******.************************************ PP == domain 3 score: 7.5 bits; conditional E-value: 0.00027 DUF4705 28 qLpvAsaGpklppagLsrPs 47 + +As+Gp lpp+gL rP+ T322062_1 918 CFLAASPGPALPPGGLCRPR 937 5679***************6 PP == domain 4 score: 1.1 bits; conditional E-value: 0.027 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322062_1 945 QGQLLPPGALCRPKSS 960 6899999999999997 PP == domain 5 score: -13.6 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322062_1 983 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 1043 5777766666666666653333333333333333333222222111134555555555555 PP == domain 6 score: 1.3 bits; conditional E-value: 0.023 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+s +L +AsaGp + L+rP T322062_1 1049 ASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 1081 5555.5555555555.......5555555555554555555 PP == domain 7 score: 33.4 bits; conditional E-value: 2.2e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322062_1 1070 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1118 9******9555.7765499***************************9976 PP == domain 8 score: 9.1 bits; conditional E-value: 8.2e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322062_1 1118 LRASSPGPALPPGCVSRPDSCL 1139 6689*****************9 PP == domain 9 score: 18.2 bits; conditional E-value: 1.2e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322062_1 1139 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1172 68899999************************87 PP == domain 10 score: 53.2 bits; conditional E-value: 1.4e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322062_1 1177 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1224 9*********************************************..97 PP == domain 11 score: 11.8 bits; conditional E-value: 1.2e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssC 49 gp Pasr+p q +++ ++l rp+++Lp As+Gp l pa++ +Pss+ T322062_1 1255 GPPPASRWPVQ-AQLWLENSLCRPRSCLPGASPGPALaptaasrgqvpacLPASRMQPSSS 1314 899********.9*999********************666665555555534566666665 PP == domain 12 score: -1.6 bits; conditional E-value: 0.19 DUF4705 32 AsaGpkl....ppagLsrP 46 A+aGp p++gL rP T322062_1 1393 ATAGPADallqPELGLYRP 1411 8888887778899999998 PP == domain 13 score: 1.4 bits; conditional E-value: 0.022 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322062_1 1467 GRGWASsSWPLQ-THLQPPGVLSGPSS 1492 78999637****.88888888887776 PP == domain 14 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 9 rpLqa................................paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 +Lqa +++ ++ glsr s+++p As+Gpk+ pp++L rP T322062_1 1496 LRLQAqlrppnkvfglsspaassgpgrptts*sqapqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1577 56666666666666666666666666666666666668888*********************55555555555555555555 PP == domain 15 score: -1.7 bits; conditional E-value: 0.19 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322062_1 1583 RPLQ-AQLQPPGGLCRPKS 1600 9***.99999999888865 PP == domain 16 score: -1.8 bits; conditional E-value: 0.21 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322062_1 1634 SSQPLQ-AQLLLPQWP 1648 679***.666555433 PP == domain 17 score: 17.1 bits; conditional E-value: 2.6e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322062_1 1662 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1744 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 8707.07 // Query: T322062_2 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-46 156.1 272.0 2.8e-18 65.7 10.8 22.2 20 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.9 1.3e-08 0.00021 27 48 .. 832 853 .. 820 853 .. 0.94 2 ! 4.3 3.1 0.0025 41 2 39 .. 861 898 .. 861 902 .. 0.86 3 ! 37.3 19.0 1.3e-13 2.2e-09 1 50 [] 913 971 .. 913 971 .. 0.96 4 ! 16.9 9.9 3e-07 0.0048 16 49 .. 958 991 .. 957 993 .. 0.91 5 ! 3.9 5.3 0.0036 59 1 19 [. 1010 1031 .. 996 1034 .. 0.68 6 ! 2.5 11.6 0.0099 1.6e+02 1 38 [. 1010 1044 .. 1010 1059 .. 0.73 7 ? -1.5 19.7 0.18 2.9e+03 1 39 [. 1035 1096 .. 1035 1097 .. 0.84 8 ! 4.4 15.5 0.0025 41 1 39 [. 1091 1139 .. 1091 1148 .. 0.87 9 ! 6.2 1.6 0.00069 11 1 18 [. 1133 1149 .. 1133 1165 .. 0.75 10 ! 16.2 2.3 5.1e-07 0.0082 1 26 [. 1166 1190 .. 1166 1192 .. 0.95 11 ! 14.8 13.9 1.4e-06 0.022 1 36 [. 1199 1277 .. 1199 1279 .. 0.75 12 ? -1.7 15.9 0.19 3.1e+03 2 41 .. 1276 1312 .. 1275 1321 .. 0.67 13 ! 14.2 10.8 2.1e-06 0.035 18 50 .] 1472 1504 .. 1457 1504 .. 0.87 14 ! 22.9 5.9 3.9e-09 6.4e-05 17 50 .] 1504 1537 .. 1503 1537 .. 0.96 15 ! 65.7 10.8 1.7e-22 2.8e-18 1 50 [] 1542 1591 .. 1542 1591 .. 0.99 16 ! 11.8 1.2 1.2e-05 0.19 25 44 .. 1587 1606 .. 1587 1607 .. 0.95 17 ! 16.1 7.3 5.5e-07 0.009 20 49 .. 1614 1643 .. 1612 1645 .. 0.90 18 ? -0.2 2.0 0.069 1.1e+03 19 46 .. 1654 1685 .. 1652 1688 .. 0.88 19 ? 1.1 3.1 0.026 4.3e+02 4 29 .. 1706 1730 .. 1703 1730 .. 0.88 20 ! 18.3 6.9 1.1e-07 0.0018 2 35 .. 1729 1761 .. 1728 1767 .. 0.93 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322062_2 832 SYLPAASPGPELSPVGLHRPSS 853 67******************98 PP == domain 2 score: 4.3 bits; conditional E-value: 0.0025 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322062_2 861 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 898 67788999888.899********************9854 PP == domain 3 score: 37.3 bits; conditional E-value: 1.3e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322062_2 913 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 971 9*****************99997888999****************************98 PP == domain 4 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps+ L +As+G k p ++LsrPss+ T322062_2 958 SRPQVGLPRPSSSLSAASPGAKVPRVSLSRPSSS 991 56899**************************975 PP == domain 5 score: 3.9 bits; conditional E-value: 0.0036 DUF4705 1 PgpAPasrrpLqa...paslqa 19 PgpA ++rpLqa p +l++ T322062_2 1010 PGPAFDFWRPLQAstrPGLLPP 1031 6777777777776666555554 PP == domain 6 score: 2.5 bits; conditional E-value: 0.0099 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322062_2 1010 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 1044 9***********..666665.88888999999888876 PP == domain 7 score: -1.5 bits; conditional E-value: 0.18 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322062_2 1035 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1096 799999999999999999999999999999988877788888887764489********997 PP == domain 8 score: 4.4 bits; conditional E-value: 0.0025 DUF4705 1 PgpAPasrrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 Pgp +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322062_2 1091 PGPVFPFRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1139 7888889**************8888777549**************9854 PP == domain 9 score: 6.2 bits; conditional E-value: 0.00069 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322062_2 1133 PGPTPASQQPLW-TQCLP 1149 9**********9.77766 PP == domain 10 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322062_2 1166 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1190 9***********.9***********7 PP == domain 11 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqa...........................................paslqasglsrpsaqLpvAsaGp 36 P+pA+asrrpLqa + +l++ gl rps++ AsaGp T322062_2 1199 PRPAWASRRPLQAqvvlksaspgpasqqvsklfwlsscpapnrlcrprtfssqalrAHLLPPGGLYRPSSGWRTASAGP 1277 99*********************77777777777777777777777777777777777777777777777777777776 PP == domain 12 score: -1.7 bits; conditional E-value: 0.19 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 gpA as+ pLq +++ +++ p+a +As+ p ++pa T322062_2 1276 GPALASQGPLQ-AQLSPPQ--RPPGAKSLPASRHPACSPA 1312 9**********.5555555..3455555556666666554 PP == domain 13 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322062_2 1472 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1504 899***************************987 PP == domain 14 score: 22.9 bits; conditional E-value: 3.9e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322062_2 1504 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1537 899*****************************87 PP == domain 15 score: 65.7 bits; conditional E-value: 1.7e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322062_2 1542 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1591 9***********************************************98 PP == domain 16 score: 11.8 bits; conditional E-value: 1.2e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322062_2 1587 PSSSLPAASAGLSRPQVGLE 1606 99****************96 PP == domain 17 score: 16.1 bits; conditional E-value: 5.5e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322062_2 1614 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1643 67888**********************975 PP == domain 18 score: -0.2 bits; conditional E-value: 0.069 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322062_2 1654 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1685 67888899999999***99999999*****99 PP == domain 19 score: 1.1 bits; conditional E-value: 0.026 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322062_2 1706 RPASSR-LTAPSPVQSSCLSATSAGP 1730 599999.*99999*******999976 PP == domain 20 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322062_2 1729 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1761 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 8434.98 // Query: T322062_3 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-16 60.1 259.3 1.5e-06 28.1 6.1 22.1 20 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.3 0.44 7.1e+03 7 16 .. 96 104 .. 86 121 .. 0.62 2 ? -2.4 0.2 0.33 5.4e+03 17 46 .. 402 431 .. 394 433 .. 0.83 3 ! 7.9 1.0 0.0002 3.3 4 24 .. 831 851 .. 830 867 .. 0.90 4 ? -0.6 2.7 0.087 1.4e+03 1 25 [. 881 904 .. 881 904 .. 0.75 5 ? -1.3 0.2 0.15 2.4e+03 41 49 .. 920 928 .. 917 929 .. 0.86 6 ? -1.8 0.8 0.21 3.4e+03 7 15 .. 929 936 .. 924 941 .. 0.78 7 ! 14.5 1.3 1.7e-06 0.027 1 14 [. 944 956 .. 944 963 .. 0.90 8 ! 3.4 18.1 0.0051 84 1 50 [] 965 1030 .. 965 1030 .. 0.88 9 ? -7.3 17.6 1 1.6e+04 3 31 .. 1001 1076 .. 999 1079 .. 0.62 10 ? 2.3 9.9 0.011 1.8e+02 6 49 .. 1085 1127 .. 1082 1128 .. 0.91 11 ! 3.7 13.6 0.0041 67 13 42 .. 1164 1195 .. 1128 1214 .. 0.69 12 ! 28.1 6.1 9.4e-11 1.5e-06 21 50 .] 1230 1259 .. 1217 1259 .. 0.93 13 ! 18.8 22.5 7.6e-08 0.0012 1 50 [] 1264 1325 .. 1264 1325 .. 0.98 14 ! 5.5 7.8 0.0011 18 16 43 .. 1480 1508 .. 1460 1515 .. 0.74 15 ! 17.4 6.0 2.1e-07 0.0034 1 26 [. 1531 1555 .. 1531 1557 .. 0.96 16 ! 12.0 0.5 1.1e-05 0.17 2 15 .. 1565 1577 .. 1565 1584 .. 0.82 17 ! 14.6 0.7 1.6e-06 0.026 1 13 [. 1585 1597 .. 1585 1615 .. 0.87 18 ! 6.5 12.2 0.00054 8.8 1 46 [. 1617 1663 .. 1617 1665 .. 0.79 19 ! 2.5 0.7 0.0094 1.5e+02 29 50 .] 1667 1689 .. 1667 1689 .. 0.86 20 ! 16.5 16.7 4.1e-07 0.0068 2 39 .. 1695 1754 .. 1694 1761 .. 0.90 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.44 DUF4705 7 srrpLqapas 16 ++r+L+ p T322062_3 96 GQRRLH-PEN 104 577777.554 PP == domain 2 score: -2.4 bits; conditional E-value: 0.33 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322062_3 402 MAHCSLKLPGSSNPTTSVFPVADRVSLCRP 431 677788889998899999999988999888 PP == domain 3 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322062_3 831 APTSRQPLQAQNFLQSASTDQ 851 9********999999987655 PP == domain 4 score: -0.6 bits; conditional E-value: 0.087 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322062_3 881 TGTAPSLQWPL*tQ---LLPPSLLSRP 904 799*******9744...6666666665 PP == domain 5 score: -1.3 bits; conditional E-value: 0.15 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322062_3 920 GSLSRPSSS 928 589***997 PP == domain 6 score: -1.8 bits; conditional E-value: 0.21 DUF4705 7 srrpLqapa 15 srrpLq ++ T322062_3 929 SRRPLQ-AQ 936 89****.66 PP == domain 7 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322062_3 944 PGPAPASRRPLQ-A 956 9***********.5 PP == domain 8 score: 3.4 bits; conditional E-value: 0.0051 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322062_3 965 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 1030 9***********999**********97777666666778889************9999...88899998 PP == domain 9 score: -7.3 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322062_3 1001 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1076 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 10 score: 2.3 bits; conditional E-value: 0.011 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322062_3 1085 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1127 59*****.************9...679999998899*********97 PP == domain 11 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322062_3 1164 ApqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1195 233666699*******************5543 PP == domain 12 score: 28.1 bits; conditional E-value: 9.4e-11 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPssCL 50 ++ ++aqLp A++Gp+l+pa+L+ P+sCL T322062_3 1230 FFGLAPAQLPTAFVGPELSPAKLFGPTSCL 1259 599**************************9 PP == domain 13 score: 18.8 bits; conditional E-value: 7.6e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a+++pLq +++l+++glsrps+++ +Gp++ p +gL+ P sCL T322062_3 1264 TGPALAGEQPLQ-APLLPPRGLSRPSSRPHSGLPGPSPclppgiphaaqllPHGGLLMPNSCL 1325 8***********.*************************************************8 PP == domain 14 score: 5.5 bits; conditional E-value: 0.0011 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322062_3 1480 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1508 3356889***************9887776 PP == domain 15 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322062_3 1531 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1555 9***********.***********96 PP == domain 16 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322062_3 1565 GPAWASRQPLQA-Q 1577 9**********4.4 PP == domain 17 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322062_3 1585 PGPAPASRRPLQA 1597 9***********7 PP == domain 18 score: 6.5 bits; conditional E-value: 0.00054 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322062_3 1617 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1663 9***********999*****99888765.4566666544777778777 PP == domain 19 score: 2.5 bits; conditional E-value: 0.0094 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322062_3 1667 LLVASSGPELdLQSAFAGPASCL 1689 789*******8677888999998 PP == domain 20 score: 16.5 bits; conditional E-value: 4.1e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322062_3 1695 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1754 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 8305.21 // Query: T110092_1 [L=7411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.39s 00:00:02.36 Elapsed: 00:00:00.79 # Mc/sec: 26837.48 // Query: T110092_2 [L=7411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.46s 00:00:02.63 Elapsed: 00:00:00.89 # Mc/sec: 23822.03 // Query: T110092_3 [L=7410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.43s 00:00:02.58 Elapsed: 00:00:00.84 # Mc/sec: 25236.61 // Query: T324656_1 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-46 154.5 337.0 5.8e-18 64.7 10.4 28.0 28 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.1 0.4 0.0031 51 17 33 .. 2 18 .. 1 20 [. 0.87 2 ! 19.6 4.7 4.3e-08 0.00071 17 50 .] 14 47 .. 13 47 .. 0.96 3 ! 51.8 9.7 3.8e-18 6.2e-14 1 50 [] 52 99 .. 52 99 .. 0.99 4 ? -1.1 1.0 0.13 2.1e+03 5 26 .. 100 132 .. 100 135 .. 0.70 5 ! 4.3 11.4 0.0027 43 5 48 .. 133 176 .. 129 177 .. 0.86 6 ? -6.2 6.2 1 1.6e+04 5 36 .. 202 258 .. 176 267 .. 0.53 7 ? -3.7 0.3 0.8 1.3e+04 4 11 .. 277 284 .. 277 291 .. 0.88 8 ! 4.1 5.2 0.003 49 19 38 .. 426 445 .. 420 455 .. 0.78 9 ? 2.2 1.2 0.012 1.9e+02 1 19 [. 441 458 .. 441 473 .. 0.77 10 ! 15.3 2.7 9.5e-07 0.015 1 26 [. 474 498 .. 474 500 .. 0.95 11 ! 11.1 13.0 2e-05 0.33 1 48 [. 507 576 .. 507 587 .. 0.63 12 ! 5.1 9.0 0.0015 25 2 49 .. 584 624 .. 583 625 .. 0.62 13 ? -0.8 23.3 0.1 1.7e+03 10 49 .. 849 932 .. 821 932 .. 0.76 14 ! 37.2 1.6 1.4e-13 2.2e-09 19 50 .] 946 977 .. 946 977 .. 0.97 15 ! 15.5 15.3 8.5e-07 0.014 1 50 [] 982 1043 .. 982 1043 .. 0.88 16 ? -2.8 0.6 0.44 7.3e+03 4 11 .. 1111 1118 .. 1111 1119 .. 0.91 17 ? -2.6 1.3 0.39 6.3e+03 4 12 .. 1127 1135 .. 1127 1165 .. 0.67 18 ? -2.3 0.3 0.29 4.8e+03 4 22 .. 1175 1197 .. 1175 1203 .. 0.63 19 ? -4.6 1.7 1 1.6e+04 6 13 .. 1209 1216 .. 1207 1245 .. 0.67 20 ? -3.2 0.1 0.58 9.5e+03 14 36 .. 1315 1338 .. 1312 1345 .. 0.62 21 ? -3.2 1.6 0.6 9.8e+03 6 14 .. 1343 1364 .. 1339 1393 .. 0.58 22 ! 8.7 11.0 0.00011 1.9 18 50 .] 1554 1586 .. 1539 1586 .. 0.86 23 ! 27.1 4.0 1.9e-10 3.1e-06 16 50 .] 1585 1619 .. 1584 1619 .. 0.95 24 ! 64.7 10.4 3.6e-22 5.8e-18 1 50 [] 1624 1673 .. 1624 1673 .. 0.99 25 ! 14.1 6.5 2.3e-06 0.037 20 50 .] 1696 1727 .. 1694 1727 .. 0.90 26 ! 2.7 1.2 0.0081 1.3e+02 27 46 .. 1725 1746 .. 1724 1748 .. 0.75 27 ? 2.3 0.7 0.011 1.8e+02 29 50 .] 1750 1772 .. 1750 1772 .. 0.86 28 ! 21.0 13.2 1.6e-08 0.00026 3 39 .. 1802 1837 .. 1777 1844 .. 0.78 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0031 DUF4705 17 lqasglsrpsaqLpvAs 33 l++ + srp +Lp +s T324656_1 2 LPPGCVSRPDCCLPTTS 18 89999999999999887 PP == domain 2 score: 19.6 bits; conditional E-value: 4.3e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T324656_1 14 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 47 7899****************************87 PP == domain 3 score: 51.8 bits; conditional E-value: 3.8e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s ps++L ++saGp++p++g srP CL T324656_1 52 PGSAPALRWRLQAPNGLRSVGSSAPSLGLLATSAGPSRPEVGVSRP--CL 99 9*********************************************..97 PP == domain 4 score: -1.1 bits; conditional E-value: 0.13 DUF4705 5 PasrrpLqa............paslqasglsrps 26 Pas++ L a p+ l +s++ rp+ T324656_1 100 PASKQALWAqllpsskppl*aPNFLEPSSS-RPP 132 899999997777777777777888888743.333 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 5 PasrrpLqapaslqa.sglsrpsaqLpvAsaGpkl.ppagLsrPss 48 asr+p q a l+ ++l r +++Lp As+Gp l p a+ ++P++ T324656_1 133 TASRWPVQ--AQLWR*NSLCRSRSCLPGASPGPALaPTAASRQPAC 176 59******..999*9999*****************77777777754 PP == domain 6 score: -6.2 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa........................paslqasglsr.psaqLpvAsaGp 36 Pas++ L p++++ ++ s p ++ A +G+ T324656_1 202 PASHWLLPR*ersa*apcltpapptltpwltpaPPTQREVSVSPlPHTGPSHAERGQ 258 333333322666666444444444444444445666666665532555555555555 PP == domain 7 score: -3.7 bits; conditional E-value: 0.8 DUF4705 4 APasrrpL 11 A as+rpL T324656_1 277 ALASHRPL 284 89*****9 PP == domain 8 score: 4.1 bits; conditional E-value: 0.003 DUF4705 19 asglsrpsaqLpvAsaGpkl 38 ++++ r+ ++Lp+As+Gp+ T324656_1 426 SRRPLRAQLFLPAASPGPTA 445 67788899999999999976 PP == domain 9 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pgp as++pL +++l+ T324656_1 441 PGPTAASQQPLW-TQRLPI 458 9**********9.888874 PP == domain 10 score: 15.3 bits; conditional E-value: 9.5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324656_1 474 PGPGQASRWPLQ-DQLLPSDGVSRPQ 498 9***********.9**********96 PP == domain 11 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 1 PgpAPasrrpLqa.......................paslqasglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as+rpLqa + ++ + +++ p ++ + l p +gL rPss T324656_1 507 PRPAWASWRPLQAqvvlksaspgpasqqvsklfglnS------CPAQNRLCRPRTFSSQALrarllPLGGLYRPSS 576 99*********************44444444444440......445555555555555555555555555555555 PP == domain 12 score: 5.1 bits; conditional E-value: 0.0015 DUF4705 2 gpAPasrrpLqa..............paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpA as+ pLqa ++ l++ gl p sC T324656_1 584 GPALASQGPLQAqlspprrppgspraAQFLPHGGLLMP---------------------NSC 624 9**********555555555555555555555555555.....................554 PP == domain 13 score: -0.8 bits; conditional E-value: 0.1 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpkl............ppagLsrPssC 49 +Lqa ++ ++ glsr s+++p+As+Gpk pp+ L rP+s+ T324656_1 849 RLQArllppnnlfglsacpspgglgpptasssqapqAQVRPHGGLSRISSCPPMASPGPKWslvggllhsqlgPPGDLCRPKSS 932 55556666666666666666666666666666665577779*******************977888888888888888888775 PP == domain 14 score: 37.2 bits; conditional E-value: 1.4e-13 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l++a+L+ P++CL T324656_1 946 ASSFGSTPAQLPAAFVGPELSQAKLFGPTYCL 977 689****************************9 PP == domain 15 score: 15.5 bits; conditional E-value: 8.5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq ++l+++glsrp++ + Gp++ p +gL+ P sCL T324656_1 982 TGPALAVEQPLQ-DPLLPPRGLSRPISHPHGGLLGPNPclppgspraghflPHGGLLMPNSCL 1043 8***********.7889999999999988888888888888888888888899*********8 PP == domain 16 score: -2.8 bits; conditional E-value: 0.44 DUF4705 4 APasrrpL 11 A as++pL T324656_1 1111 ALASQWPL 1118 89*****9 PP == domain 17 score: -2.6 bits; conditional E-value: 0.39 DUF4705 4 APasrrpLq 12 A as++pL T324656_1 1127 ALASHWPLP 1135 789999985 PP == domain 18 score: -2.3 bits; conditional E-value: 0.29 DUF4705 4 APasrrpLqa....paslqasgl 22 A as+rpL l+++g+ T324656_1 1175 ALASHRPLPRrevsVSPLPHTGP 1197 889****9544554333555555 PP == domain 19 score: -4.6 bits; conditional E-value: 1 DUF4705 6 asrrpLqa 13 as++pL T324656_1 1209 ASHWPLPP 1216 89999953 PP == domain 20 score: -3.2 bits; conditional E-value: 0.58 DUF4705 14 paslqasglsr.psaqLpvAsaGp 36 p++l+ +g+s p ++ A +G T324656_1 1315 PPTLRNVGMSPlPHTGPSHAERGR 1338 888888887743555666665555 PP == domain 21 score: -3.2 bits; conditional E-value: 0.6 DUF4705 6 asrrpLqa.............p 14 as++pL p T324656_1 1343 ASHWPLPP*ersv*apcltlaP 1364 8888886566666655555552 PP == domain 22 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp s P s L T324656_1 1554 PQVGLSRPTCSLPASSPGPALPPSCVSTPDSGL 1586 899**************************9987 PP == domain 23 score: 27.1 bits; conditional E-value: 1.9e-10 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T324656_1 1585 GLPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1619 5899*****************************87 PP == domain 24 score: 64.7 bits; conditional E-value: 3.6e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+rr+Lqap+ l+++g+srp+++Lp+AsaGp++p++gLsrPss+L T324656_1 1624 PGSAPALRRRLQAPNGLRSVGSSRPILRLPAASAGPNRPEVGLSRPSSSL 1673 9***********************************************98 PP == domain 25 score: 14.1 bits; conditional E-value: 2.3e-06 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324656_1 1696 VGLPGPSSVLSAASPGAKLPRVSLSRPSlSCL 1727 67888**********************96776 PP == domain 26 score: 2.7 bits; conditional E-value: 0.0081 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324656_1 1725 SCLPVASFGPAQlmALSGLPRP 1746 7*********865555566665 PP == domain 27 score: 2.3 bits; conditional E-value: 0.011 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T324656_1 1750 LLVASSGPELdLQSAFAGPASCL 1772 789*******8677888999998 PP == domain 28 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklp 39 APa+r+ q +++l+asgl rps++L++A++Gp++p T324656_1 1802 KAPAFRWLWQ-SQLLPASGLFRPSSFLTMAFPGPVFP 1837 4666666444.************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 9175.69 // Query: T324656_2 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-37 126.5 291.9 1.9e-14 53.5 9.4 27.5 24 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 1.2 0.032 5.2e+02 28 38 .. 2 12 .. 1 19 [. 0.73 2 ? 2.1 6.5 0.013 2.2e+02 1 36 [. 8 43 .. 8 45 .. 0.91 3 ! 15.5 2.5 8.3e-07 0.014 1 26 [. 41 65 .. 41 67 .. 0.95 4 ! 11.5 12.0 1.5e-05 0.24 1 48 [. 74 143 .. 74 152 .. 0.75 5 ? 2.0 11.9 0.013 2.2e+02 2 49 .. 151 191 .. 150 192 .. 0.71 6 ? -1.2 0.3 0.14 2.3e+03 31 46 .. 334 353 .. 324 354 .. 0.62 7 ! 4.3 21.4 0.0026 42 10 45 .. 439 507 .. 409 522 .. 0.73 8 ! 27.2 3.1 1.9e-10 3.1e-06 19 50 .] 536 567 .. 525 567 .. 0.95 9 ! 16.8 10.5 3.2e-07 0.0053 1 29 [. 572 599 .. 572 615 .. 0.78 10 ? -3.5 0.2 0.71 1.2e+04 14 23 .. 640 649 .. 632 673 .. 0.59 11 ! 19.8 8.9 3.8e-08 0.00062 18 50 .] 824 856 .. 809 856 .. 0.90 12 ! 15.3 2.7 9.7e-07 0.016 17 50 .] 856 889 .. 856 889 .. 0.96 13 ! 53.5 9.4 1.2e-18 1.9e-14 1 50 [] 894 941 .. 894 941 .. 0.99 14 ? -0.5 1.8 0.085 1.4e+03 5 26 .. 942 975 .. 942 977 .. 0.75 15 ! 4.6 12.0 0.0021 34 2 40 .. 972 1009 .. 971 1032 .. 0.68 16 ? -2.4 1.3 0.33 5.4e+03 14 42 .. 1058 1081 .. 1054 1084 .. 0.54 17 ? -0.8 0.6 0.1 1.7e+03 6 23 .. 1310 1340 .. 1307 1357 .. 0.82 18 ? -5.1 9.2 1 1.6e+04 19 38 .. 1565 1584 .. 1540 1598 .. 0.73 19 ! 17.4 6.2 2.1e-07 0.0035 1 26 [. 1613 1637 .. 1613 1639 .. 0.96 20 ! 3.4 0.1 0.0051 83 2 15 .. 1647 1659 .. 1647 1666 .. 0.79 21 ! 12.9 0.7 5.5e-06 0.089 1 13 [. 1667 1679 .. 1667 1693 .. 0.92 22 ! 18.0 9.4 1.4e-07 0.0023 1 37 [. 1699 1747 .. 1699 1749 .. 0.97 23 ! 20.0 12.5 3.4e-08 0.00055 2 38 .. 1745 1825 .. 1745 1834 .. 0.95 24 ! 3.6 0.3 0.0043 69 2 22 .. 1822 1841 .. 1821 1846 .. 0.86 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.032 DUF4705 28 qLpvAsaGpkl 38 +Lp+As+Gp+ T324656_2 2 FLPAASPGPTA 12 68999999975 PP == domain 2 score: 2.1 bits; conditional E-value: 0.013 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp as++pL +++l+ s ++ ++ ++L ++s+Gp T324656_2 8 PGPTAASQQPLW-TQRLPISwRPWSAHSFLKPSSPGP 43 9***********.99999554899************9 PP == domain 3 score: 15.5 bits; conditional E-value: 8.3e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324656_2 41 PGPGQASRWPLQ-DQLLPSDGVSRPQ 65 9***********.9**********96 PP == domain 4 score: 11.5 bits; conditional E-value: 1.5e-05 DUF4705 1 PgpAPasrrpLqa..........paslq.......asglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as+rpLqa pas+q s++ + +++ p ++ + l p +gL rPss T324656_2 74 PRPAWASWRPLQAqvvlksaspgPASQQvsklfglNSCPAQNRLCRPRTFSSQALrarllPLGGLYRPSS 143 99*********************88887333333335666677777777777777777777777777776 PP == domain 5 score: 2.0 bits; conditional E-value: 0.013 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpA as+ pLq +++ +++ rp+ + +A + lp +gL+ P sC T324656_2 151 GPALASQGPLQ-AQLSPPR---RPPGSPRAA---QCLPHGGLLMPNSC 191 9**********.6666666...666666555...44566677777777 PP == domain 6 score: -1.2 bits; conditional E-value: 0.14 DUF4705 31 vAsaGpkl....ppagLsrP 46 A+aGp p++gL rP T324656_2 334 EATAGPADalllPELGLYRP 353 46777765556677777777 PP == domain 7 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppa.gLsr 45 +Lqa ++ ++ glsr s+++p+As+Gpk++p+ gL+r T324656_2 439 RLQArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKRSPVgGLLR 507 45556666666666666666666666666666665577779********************65513444 PP == domain 8 score: 27.2 bits; conditional E-value: 1.9e-10 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as+l++++aqL A++Gp+l+ a+L++P++CL T324656_2 536 ASSLGSTPAQLKTAFVGPELSRAKLFAPAYCL 567 589****************************9 PP == domain 9 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqL 29 +gpA a ++pLq ++l+++glsrps+++ T324656_2 572 TGPALAVEQPLQ-VPLLPPRGLSRPSSRP 599 8***********.*************986 PP == domain 10 score: -3.5 bits; conditional E-value: 0.71 DUF4705 14 paslqasgls 23 p++l+ +g s T324656_2 640 PPTLREVGVS 649 4444444444 PP == domain 11 score: 19.8 bits; conditional E-value: 3.8e-08 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsr+ Lpv+s+Gp lpp++ srP +CL T324656_2 824 PQVGLSRTTCSLPVSSPGPALPPGSVSRPDCCL 856 899*****************************9 PP == domain 12 score: 15.3 bits; conditional E-value: 9.7e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A + p+lp+a+L rP+s L T324656_2 856 LPTTSLDSAPAHLLAALVRPQLPQAKLPRPRSGL 889 6889****************************87 PP == domain 13 score: 53.5 bits; conditional E-value: 1.2e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++L ++saGp++p+++ srP CL T324656_2 894 PGSAPALRWRLQAPNGLWSVGSSTPSLGLLATSAGPSRPEVSFSRP--CL 941 9*********************************************..97 PP == domain 14 score: -0.5 bits; conditional E-value: 0.085 DUF4705 5 PasrrpLqa............paslqasglsrps 26 Pas++ L a p+ l++s+++ p T324656_2 942 PASKQALLAqllpssqppl*aPNFLKPSSSGPPT 975 8889988877777777777778888888877775 PP == domain 15 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 2 gpAPasrrpLqapaslqa.sglsrpsaqLpvAsaGpklpp 40 gp asr+p q a l+ ++l r++++Lp As+Gp+l p T324656_2 972 GPPTASRWPVQ--AQLWL*NSLCRTRSCLPGASPGPSLTP 1009 77789******..677777777777777777777777733 PP == domain 16 score: -2.4 bits; conditional E-value: 0.33 DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 p++l s ++ + +++a+p+l+++g T324656_2 1058 PPTL-----SEVGMSPCLTPAPPTLREVG 1081 3444.....44444455555667777776 PP == domain 17 score: -0.8 bits; conditional E-value: 0.1 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ +g s T324656_2 1310 ASHWPLPR*emsa*apcltlaPPTLREVGVS 1340 8999998888888888888888888888876 PP == domain 18 score: -5.1 bits; conditional E-value: 1 DUF4705 19 asglsrpsaqLpvAsaGpkl 38 ++ + r+ ++Lp+As+ p++ T324656_2 1565 SRHPLRAQLFLPAASPRPTP 1584 44567777777777777776 PP == domain 19 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +++l++ g srp+ T324656_2 1613 PGPGQASRWPLQ-AQLLPSDGVSRPP 1637 9***********.************9 PP == domain 20 score: 3.4 bits; conditional E-value: 0.0051 DUF4705 2 gpAPasrrpLqapa 15 gp asrrpLqa + T324656_2 1647 GPSCASRRPLQA-Q 1659 8999*******4.4 PP == domain 21 score: 12.9 bits; conditional E-value: 5.5e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpL+a T324656_2 1667 PGPAPASRRPLHA 1679 9***********6 PP == domain 22 score: 18.0 bits; conditional E-value: 1.4e-07 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpLq pas+++ + +ps+ L +A+ Gp T324656_2 1699 PGPAPSSRRPLQVqnflesaspgpasPASQWPL-SAQPSSWLSAAFLGPA 1747 9********************************.89*************6 PP == domain 23 score: 20.0 bits; conditional E-value: 3.4e-08 DUF4705 2 gpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpkl 38 gpA +++pLqa p +l+ g+++ps++LpvAs Gp T324656_2 1745 GPAFDFWWPLQAqnltssrplqarlpas*rpararprlhsglstps*lsphcslpsPKLLPFGGFGSPSSCLPVASLGPAH 1825 89999999999999999999999********************************************************87 PP == domain 24 score: 3.6 bits; conditional E-value: 0.0043 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s++p q ++ ++ +l T324656_2 1822 GPAHSSQWPFQ-APFFPSGSL 1841 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.62 # Mc/sec: 10063.66 // Query: T324656_3 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-20 72.4 67.0 6.2e-14 51.8 9.7 28.9 28 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 12.3 7.3e-06 0.12 13 45 .. 39 74 .. 3 89 .. 0.72 2 ! 27.2 3.1 1.9e-10 3.1e-06 19 50 .] 103 134 .. 92 134 .. 0.95 3 ! 19.1 7.9 6e-08 0.00099 1 29 [. 139 166 .. 139 184 .. 0.80 4 ? -3.7 0.3 0.84 1.4e+04 14 23 .. 207 216 .. 199 237 .. 0.61 5 ? -6.1 6.3 1 1.6e+04 6 41 .. 246 289 .. 243 298 .. 0.55 6 ! 16.1 12.2 5.3e-07 0.0086 17 50 .] 413 446 .. 383 446 .. 0.88 7 ! 21.2 2.7 1.3e-08 0.00022 17 50 .] 446 479 .. 446 479 .. 0.96 8 ! 51.8 9.7 3.8e-18 6.2e-14 1 50 [] 484 531 .. 484 531 .. 0.99 9 ? -0.9 0.5 0.11 1.9e+03 5 26 .. 532 564 .. 532 566 .. 0.70 10 ! 4.1 11.6 0.0031 50 5 48 .. 565 608 .. 561 610 .. 0.87 11 ? -6.1 5.9 1 1.6e+04 5 23 .. 634 676 .. 608 698 .. 0.51 12 ? -4.2 10.0 1 1.6e+04 18 38 .. 834 854 .. 808 858 .. 0.80 13 ! 2.7 5.3 0.0081 1.3e+02 1 36 [. 850 885 .. 850 885 .. 0.91 14 ! 16.0 2.2 5.7e-07 0.0092 1 26 [. 883 907 .. 883 909 .. 0.95 15 ! 8.6 14.7 0.00012 1.9 1 38 [. 916 996 .. 916 1000 .. 0.81 16 ? 1.8 10.6 0.016 2.6e+02 2 27 .. 993 1032 .. 992 1039 .. 0.68 17 ? -6.3 8.0 1 1.6e+04 4 44 .. 1067 1110 .. 1067 1136 .. 0.63 18 ? -1.4 1.3 0.16 2.6e+03 12 35 .. 1163 1183 .. 1158 1193 .. 0.70 19 ? -0.9 1.2 0.11 1.9e+03 6 24 .. 1192 1223 .. 1188 1247 .. 0.76 20 ? -2.9 0.2 0.45 7.4e+03 6 24 .. 1294 1316 .. 1293 1320 .. 0.63 21 ? -1.4 1.2 0.16 2.6e+03 6 23 .. 1326 1356 .. 1324 1370 .. 0.82 22 ? -0.3 0.7 0.073 1.2e+03 18 46 .. 1460 1492 .. 1445 1493 .. 0.81 23 ? -0.1 22.3 0.062 1e+03 13 48 .. 1581 1660 .. 1548 1661 .. 0.68 24 ? -2.3 10.4 0.31 5e+03 9 45 .. 1664 1710 .. 1663 1715 .. 0.67 25 ? -1.5 9.9 0.17 2.8e+03 7 26 .. 1715 1734 .. 1713 1769 .. 0.80 26 ? -0.9 1.4 0.11 1.8e+03 21 34 .. 1786 1799 .. 1761 1806 .. 0.61 27 ! 16.9 2.5 2.9e-07 0.0048 3 36 .. 1812 1844 .. 1811 1851 .. 0.91 28 ? -3.0 0.4 0.5 8.1e+03 29 40 .. 1984 1995 .. 1963 2000 .. 0.74 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 7.3e-06 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpklppa.gLsr 45 a ++ ++ glsr s+++p+As+Gpk++p+ gL+r T324656_3 39 ApqAQVRPHGGLSRISSCPPMASPGPKRSPVgGLLR 74 23366669********************65513444 PP == domain 2 score: 27.2 bits; conditional E-value: 1.9e-10 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as+l++++aqL A++Gp+l+ a+L++P++CL T324656_3 103 ASSLGSTPAQLKTAFVGPELSRAKLFAPAYCL 134 589****************************9 PP == domain 3 score: 19.1 bits; conditional E-value: 6e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqL 29 +gpA a ++pLq ++l+++glsrps+++ T324656_3 139 TGPALAVEQPLQ-VPLLPPRGLSRPSSRP 166 8***********.*************975 PP == domain 4 score: -3.7 bits; conditional E-value: 0.84 DUF4705 14 paslqasgls 23 p++l+ +g s T324656_3 207 PPTLREVGVS 216 4444444443 PP == domain 5 score: -6.1 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............paslqasglsrpsaqLpvAsaGpklppa 41 as+rpL p++ + + + s +L++A+ p+++++ T324656_3 246 ASHRPLSRrersa*apcltpaPPTPREV---SVSPCLTPAP--PTPREV 289 7888887778888855554333333333...3334555554..555444 PP == domain 6 score: 16.1 bits; conditional E-value: 5.3e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP +CL T324656_3 413 PPQVGLSRPTCSLPASSPGPALPPGCVSRPDCCL 446 5899*****************************9 PP == domain 7 score: 21.2 bits; conditional E-value: 1.3e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T324656_3 446 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 479 6889****************************87 PP == domain 8 score: 51.8 bits; conditional E-value: 3.8e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s ps++L ++saGp++p++g srP CL T324656_3 484 PGSAPALRWRLQAPNGLRSVGSSAPSLGLLATSAGPSRPEVGVSRP--CL 531 9*********************************************..97 PP == domain 9 score: -0.9 bits; conditional E-value: 0.11 DUF4705 5 PasrrpLqa............paslqasglsrps 26 Pas++ L a p+ l +s+ srp+ T324656_3 532 PASKQALWAqllpsskppl*aPNFLEPSS-SRPP 564 89999999777777777777778888774.4443 PP == domain 10 score: 4.1 bits; conditional E-value: 0.0031 DUF4705 5 PasrrpLqapaslqa.sglsrpsaqLpvAsaGpkl.ppagLsrPss 48 asr+p q a l+ ++l r +++Lp As+Gp l p a+ ++P++ T324656_3 565 TASRWPVQ--AQLWR*NSLCRSRSCLPGASPGPALaPTAASRQPAC 608 59******..999*9999*****************77777777755 PP == domain 11 score: -6.1 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa........................paslqasgls 23 Pas++ L p++++ ++ s T324656_3 634 PASHWLLPR*ersa*apcltpapptltpwltpaPPTQREVSVS 676 3333333226666664444444444444444445555555555 PP == domain 12 score: -4.2 bits; conditional E-value: 1 DUF4705 18 qasglsrpsaqLpvAsaGpkl 38 +++++ r+ ++Lp+ s+Gp+ T324656_3 834 ASRCPRRAQLFLPAPSPGPTA 854 578999999999999999975 PP == domain 13 score: 2.7 bits; conditional E-value: 0.0081 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp as++pL +++l+ s ++ ++ ++L ++s+Gp T324656_3 850 PGPTAASQQPLW-TQRLPISwRPWSAHSFLKPSSPGP 885 9***********.999995548999**********99 PP == domain 14 score: 16.0 bits; conditional E-value: 5.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324656_3 883 PGPGQASRWPLQ-DQLLPSDGVSRPQ 907 9***********.9***********7 PP == domain 15 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 1 PgpAPasrrpLqa...........................................paslqasglsrpsaqLpvAsaGpkl 38 P pA+as+rpLqa + +l+ gl rps++ AsaGp l T324656_3 916 PLPAWASWRPLQAqvvlksaspgpasqqvsklfwlnscpapsrlcrprtfssqalrAHLLPLGGLYRPSSGCRTASAGPAL 996 56*********************8888888888888888888888888888888888888888888888888888888876 PP == domain 16 score: 1.8 bits; conditional E-value: 0.016 DUF4705 2 gpAPasrrpLqa..............paslqasglsrpsa 27 gpA as+ pLqa pas q+ + p++ T324656_3 993 GPALASQGPLQAhlspprrppgakslPASRQPACGPLPPS 1032 9**********88887777666666655544444444444 PP == domain 17 score: -6.3 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa......paslqasglsrpsaqLpvAsaGpklppagLs 44 A as+rpL ++ l p + + +++a+p+++++++s T324656_3 1067 ALASHRPLPH*ersa*APCLTLA---PPTLIPCLTPAPPTPREVSMS 1110 67888888778888884444443...555555555555555555543 PP == domain 18 score: -1.4 bits; conditional E-value: 0.16 DUF4705 12 qapaslqasglsrpsaqLpvAsaG 35 qap++l+ ++ s +L++A++ T324656_3 1163 QAPPTLREVS---VSPCLTPAPPT 1183 6899999994...45577777654 PP == domain 19 score: -0.9 bits; conditional E-value: 0.11 DUF4705 6 asrrpLqa.............paslqasglsr 24 as++pL p+sl +g s T324656_3 1192 ASHWPLPC*ersa*apcltlaPPSLTEVGVSP 1223 89999988999999999999999999998874 PP == domain 20 score: -2.9 bits; conditional E-value: 0.45 DUF4705 6 asrrpLqa....paslqasglsr 24 as++pL l+++g+s T324656_3 1294 ASHWPLPRrevsVSPLPHTGPSH 1316 89999955555544466666665 PP == domain 21 score: -1.4 bits; conditional E-value: 0.16 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ +g s T324656_3 1326 ASHWPLPR*ersasapcltlaPPTLREVGVS 1356 8999998788888888888888888888877 PP == domain 22 score: -0.3 bits; conditional E-value: 0.073 DUF4705 18 qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 ++ g s++ ++ A+aG p++gL rP T324656_3 1460 PQWGESWAWICPWEATAGLADalllPELGLYRP 1492 66678999999999***9986677899999999 PP == domain 23 score: -0.1 bits; conditional E-value: 0.062 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 a ++ ++ glsr s+++p As+Gp++ pp+gL rP+s T324656_3 1581 Arlrppnnffglssrpapsgpgrptts*sqapqAQVRPHGGLSRLSSCPPTASPGPQRppvggfl*ahlaPPGGLCRPKS 1660 35555555555555555555555555555555566779********************6666666666666666666665 PP == domain 24 score: -2.3 bits; conditional E-value: 0.31 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl...ppagLsr 45 rpLq ++++++ gl s p+++++ +As++p p +gLsr T324656_3 1664 RPLQ-AQLQPPGGLcmpksysSHPGSGPGrAASWPPRAqlrPLGGLSR 1710 9***.8888888863333333666777765677777777777777777 PP == domain 25 score: -1.5 bits; conditional E-value: 0.17 DUF4705 7 srrpLqapaslqasglsrps 26 s +pLqa ++l++sgl rps T324656_3 1715 SSQPLQAQPLLPPSGLFRPS 1734 679***************98 PP == domain 26 score: -0.9 bits; conditional E-value: 0.11 DUF4705 21 glsrpsaqLpvAsa 34 ++ +s++L+vAs+ T324656_3 1786 SPRPASSRLTVASP 1799 33445666666654 PP == domain 27 score: 16.9 bits; conditional E-value: 2.9e-07 DUF4705 3 pAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 pAPa+++pL q + +++glsrp++ L +As++ T324656_3 1812 PAPACQWPL*aQ---LIPHNGLSRPRFSLLAASWPL 1844 9*******9966...******************986 PP == domain 28 score: -3.0 bits; conditional E-value: 0.5 DUF4705 29 LpvAsaGpklpp 40 LpvA ++p p T324656_3 1984 LPVAQGPPHTPS 1995 788888887764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 10063.66 // Query: T002389_1 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.73 # Mc/sec: 4506.79 // Query: T002389_2 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 5061.47 // Query: T002389_3 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4906.11 // Query: T240996_1 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.70 # Mc/sec: 7998.06 // Query: T240996_2 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 8882.20 // Query: T240996_3 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00017 20.5 2.3 0.00024 20.0 2.3 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 2.3 1.5e-08 0.00024 228 267 .. 1300 1339 .. 1298 1345 .. 0.90 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 1.5e-08 ---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHH CS Transposase_22 228 nviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilka 267 n iqe+ +tPnr + ++ +rhii+++ k++ k+k +k+ T240996_3 1300 NQHIQEAEKTPNRINPNKSMPRHIIIKLLKTKDKEKNIKS 1339 778*********************************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 8229.09 // Query: T110423_1 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 4505.81 // Query: T110423_2 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 4136.48 // Query: T110423_3 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 3881.93 // Query: T035282_1 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 6376.75 // Query: T035282_2 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.70 # Mc/sec: 6285.65 // Query: T035282_3 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 6197.12 // Query: T090215_1 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.75 # Mc/sec: 6690.53 // Query: T090215_2 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 8226.06 // Query: T090215_3 [L=1753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 7164.34 // Query: T138227_1 [L=8826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.67u 0.53s 00:00:03.20 Elapsed: 00:00:00.93 # Mc/sec: 27150.20 // Query: T138227_2 [L=8825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.33u 0.56s 00:00:03.89 Elapsed: 00:00:01.12 # Mc/sec: 22541.81 // Query: T138227_3 [L=8825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.76u 0.49s 00:00:03.25 Elapsed: 00:00:01.00 # Mc/sec: 25246.82 // Query: T090154_1 [L=3665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.41s 00:00:01.87 Elapsed: 00:00:00.84 # Mc/sec: 12482.07 // Query: T090154_2 [L=3665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.34s 00:00:01.71 Elapsed: 00:00:00.68 # Mc/sec: 15419.03 // Query: T090154_3 [L=3664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.77 # Mc/sec: 13613.09 // Query: T257712_1 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:00.83 # Mc/sec: 8699.68 // Query: T257712_2 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-05 22.5 35.8 67 3.3 0.1 14.6 15 DUF1317 Protein of unknown function (DUF1317) ------ inclusion threshold ------ 0.029 14.3 0.3 15 5.6 0.0 4.0 4 DUF3653 Phage protein Domain annotation for each model (and alignments): >> DUF1317 Protein of unknown function (DUF1317) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.0 0.018 1.4e+02 20 32 .. 885 897 .. 878 901 .. 0.80 2 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 908 921 .. 903 925 .. 0.78 3 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 932 945 .. 927 949 .. 0.78 4 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 956 969 .. 951 973 .. 0.78 5 ? 2.4 0.0 0.015 1.2e+02 20 32 .. 1148 1160 .. 1140 1164 .. 0.82 6 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 1171 1184 .. 1166 1188 .. 0.78 7 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 1195 1208 .. 1190 1212 .. 0.78 8 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 1219 1232 .. 1214 1236 .. 0.78 9 ? 2.0 0.0 0.02 1.6e+02 19 32 .. 1243 1256 .. 1238 1267 .. 0.78 10 ? 1.3 0.1 0.034 2.8e+02 20 32 .. 1267 1279 .. 1257 1283 .. 0.78 11 ? 1.9 0.0 0.021 1.7e+02 19 32 .. 1290 1303 .. 1285 1311 .. 0.77 12 ? 1.6 0.2 0.028 2.3e+02 20 32 .. 1314 1326 .. 1304 1330 .. 0.75 13 ? 2.6 0.0 0.013 1.1e+02 19 32 .. 1337 1350 .. 1332 1354 .. 0.78 14 ! 3.3 0.1 0.0083 67 16 32 .. 1381 1397 .. 1375 1403 .. 0.79 15 ? -0.3 0.0 0.1 8.5e+02 14 32 .. 1402 1420 .. 1398 1424 .. 0.78 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.018 DUF1317 20 tkrGWvfPGlkvi 32 +rGW+fP +++ T257712_2 885 SRRGWLFPSASLT 897 68******99876 PP == domain 2 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 908 ASRRGWLFPSASLI 921 568******99987 PP == domain 3 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 932 ASRRGWLFPSASLI 945 568******99987 PP == domain 4 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 956 ASRRGWLFPSASLI 969 568******99987 PP == domain 5 score: 2.4 bits; conditional E-value: 0.015 DUF1317 20 tkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 1148 SRRGWLFPSASLI 1160 68******99987 PP == domain 6 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 1171 ASRRGWLFPSASLI 1184 568******99987 PP == domain 7 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 1195 ASRRGWLFPSASLI 1208 568******99987 PP == domain 8 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 1219 ASRRGWLFPSASLI 1232 568******99987 PP == domain 9 score: 2.0 bits; conditional E-value: 0.02 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP +++ T257712_2 1243 ASRRGWLFPSASLM 1256 568******98865 PP == domain 10 score: 1.3 bits; conditional E-value: 0.034 DUF1317 20 tkrGWvfPGlkvi 32 rGW+fP ++i T257712_2 1267 SWRGWLFPSASLI 1279 569*****99987 PP == domain 11 score: 1.9 bits; conditional E-value: 0.021 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP +++ T257712_2 1290 ASRRGWLFPSASLM 1303 568******98865 PP == domain 12 score: 1.6 bits; conditional E-value: 0.028 DUF1317 20 tkrGWvfPGlkvi 32 rGW+fP ++i T257712_2 1314 SWRGWLFPSASLI 1326 459*****99987 PP == domain 13 score: 2.6 bits; conditional E-value: 0.013 DUF1317 19 vtkrGWvfPGlkvi 32 +rGW+fP ++i T257712_2 1337 ASRRGWLFPSASLI 1350 568******99987 PP == domain 14 score: 3.3 bits; conditional E-value: 0.0083 DUF1317 16 vYsvtkrGWvfPGlkvi 32 v +rGW+fP ++i T257712_2 1381 VIPASRRGWLFPSASLI 1397 555679******99987 PP == domain 15 score: -0.3 bits; conditional E-value: 0.1 DUF1317 14 tfvYsvtkrGWvfPGlkvi 32 ++v ++rGW+f ++i T257712_2 1402 YVVVPAFRRGWLFLSASLI 1420 5566789*****9777665 PP >> DUF3653 Phage protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.43 3.5e+03 4 22 .. 812 830 .. 810 831 .. 0.85 2 ? 3.9 0.0 0.0063 52 2 22 .. 1261 1281 .. 1260 1282 .. 0.89 3 ? 5.6 0.0 0.0019 15 1 22 [. 1307 1328 .. 1307 1329 .. 0.91 4 ? -3.4 0.0 1.3 1e+04 11 23 .. 1411 1423 .. 1410 1433 .. 0.86 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.43 DUF3653 4 legkrWqGWridedkLitP 22 ++g++ GW + + Li P T257712_2 812 MHGRAGRGWLFLSASLIGP 830 6777778**********99 PP == domain 2 score: 3.9 bits; conditional E-value: 0.0063 DUF3653 2 yelegkrWqGWridedkLitP 22 y ++ +W GW + + Li P T257712_2 1261 YVVARASWRGWLFPSASLIGP 1281 7788899************99 PP == domain 3 score: 5.6 bits; conditional E-value: 0.0019 DUF3653 1 gyelegkrWqGWridedkLitP 22 +y +++ +W GW + + Li P T257712_2 1307 KYVVAHASWRGWLFPSASLIGP 1328 588999**************99 PP == domain 4 score: -3.4 bits; conditional E-value: 1.3 DUF3653 11 GWridedkLitPe 23 GW + + Li P T257712_2 1411 GWLFLSASLIGPL 1423 9*********996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.73 # Mc/sec: 9891.42 // Query: T257712_3 [L=2523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 10166.02 // Query: T234773_1 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.44s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 9025.33 // Query: T234773_2 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.91 # Mc/sec: 7240.10 // Query: T234773_3 [L=2302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.41s 00:00:01.79 Elapsed: 00:00:00.81 # Mc/sec: 8130.41 // Query: T101265_1 [L=356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 1755.96 // Query: T101265_2 [L=356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 1642.67 // Query: T101265_3 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 1880.73 // Query: T215325_1 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 2649.57 // Query: T215325_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 2609.42 // Query: T215325_3 [L=601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 3070.28 // Query: T312363_1 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 7930.39 // Query: T312363_2 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 7815.46 // Query: T312363_3 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 7815.46 // Query: T124943_1 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 10805.76 // Query: T124943_2 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.72 # Mc/sec: 10501.63 // Query: T124943_3 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 11285.33 // Query: T316335_1 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.79 # Mc/sec: 8118.96 // Query: T316335_2 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.62 # Mc/sec: 10345.13 // Query: T316335_3 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-08 32.4 50.6 0.18 11.5 0.2 11.6 12 Histone_H2A_C C-terminus of histone H2A Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.4 7.3 1 1.6e+04 27 35 .] 980 988 .. 976 988 .. 0.65 2 ! 7.2 0.2 0.00023 3.8 13 26 .. 1926 1939 .. 1923 1945 .. 0.89 3 ! 10.1 0.0 2.8e-05 0.46 10 25 .. 1949 1964 .. 1946 1966 .. 0.89 4 ! 9.8 0.1 3.7e-05 0.6 10 25 .. 1962 1977 .. 1961 1979 .. 0.89 5 ! 10.0 0.1 3e-05 0.49 10 25 .. 1975 1990 .. 1973 1992 .. 0.89 6 ! 11.5 0.2 1.1e-05 0.18 10 25 .. 2001 2016 .. 1996 2018 .. 0.90 7 ! 10.1 0.1 3e-05 0.48 10 25 .. 2014 2029 .. 2012 2031 .. 0.89 8 ! 4.6 0.0 0.0016 25 10 26 .. 2027 2043 .. 2026 2044 .. 0.90 9 ! 6.7 0.1 0.00034 5.5 14 26 .. 2044 2056 .. 2042 2059 .. 0.88 10 ! 2.7 0.0 0.0061 99 10 25 .. 2053 2068 .. 2051 2069 .. 0.88 11 ! 5.6 0.0 0.00072 12 10 26 .. 2066 2082 .. 2064 2083 .. 0.90 12 ? 1.6 0.1 0.014 2.2e+02 13 25 .. 2082 2094 .. 2080 2095 .. 0.89 Alignments for each domain: == domain 1 score: -7.4 bits; conditional E-value: 1 Histone_H2A_C 27 PKktkkkkk 35 +Kk+kkkkk T316335_3 980 KKKKKKKKK 988 566666665 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00023 Histone_H2A_C 13 AqGGVLPnIhkvLL 26 ++GGVLP+ +++L+ T316335_3 1926 MEGGVLPHLQTTLM 1939 58********9996 PP == domain 3 score: 10.1 bits; conditional E-value: 2.8e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316335_3 1949 TTLMDGGVLPHLQTTL 1964 699**********998 PP == domain 4 score: 9.8 bits; conditional E-value: 3.7e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316335_3 1962 TTLMDGGVLPHLQTTL 1977 6999*********998 PP == domain 5 score: 10.0 bits; conditional E-value: 3e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316335_3 1975 TTLMDGGVLPHLQTTL 1990 699**********998 PP == domain 6 score: 11.5 bits; conditional E-value: 1.1e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T ++GGVLP+ +++L T316335_3 2001 TTLMHGGVLPHLQTTL 2016 799**********998 PP == domain 7 score: 10.1 bits; conditional E-value: 3e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316335_3 2014 TTLMDGGVLPHLQTTL 2029 699**********998 PP == domain 8 score: 4.6 bits; conditional E-value: 0.0016 Histone_H2A_C 10 VTIAqGGVLPnIhkvLL 26 T + GGVL + +++L+ T316335_3 2027 TTLMDGGVLLHLQTMLM 2043 6999**********995 PP == domain 9 score: 6.7 bits; conditional E-value: 0.00034 Histone_H2A_C 14 qGGVLPnIhkvLL 26 GGVLP+ +++L+ T316335_3 2044 DGGVLPHLQTTLM 2056 7********9995 PP == domain 10 score: 2.7 bits; conditional E-value: 0.0061 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + G VLP+ +++L T316335_3 2053 TTLMDGEVLPHLQTTL 2068 69999********998 PP == domain 11 score: 5.6 bits; conditional E-value: 0.00072 Histone_H2A_C 10 VTIAqGGVLPnIhkvLL 26 T + GGVL + +++L+ T316335_3 2066 TTLMDGGVLLHLQAMLM 2082 699************95 PP == domain 12 score: 1.6 bits; conditional E-value: 0.014 Histone_H2A_C 13 AqGGVLPnIhkvL 25 + GGVL + +++L T316335_3 2082 MDGGVLLHLQAML 2094 57*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.68 # Mc/sec: 9432.32 // Query: T176161_1 [L=2114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 835 (0.0512081); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.79 # Mc/sec: 7655.44 // Query: T176161_2 [L=2114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 832 (0.0510242); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.77 # Mc/sec: 7854.28 // Query: T176161_3 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 327 (0.020054); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.45s 00:00:02.00 Elapsed: 00:00:00.81 # Mc/sec: 7462.88 // Query: T332099_1 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 2612.27 // Query: T332099_2 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.67 # Mc/sec: 2374.06 // Query: T332099_3 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 2447.11 // Query: T362447_1 [L=2295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-10 40.6 0.1 5.5e-07 29.5 0.0 2.4 2 FF FF domain Domain annotation for each model (and alignments): >> FF FF domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.0 3.4e-11 5.5e-07 13 51 .] 30 66 .. 19 66 .. 0.90 2 ! 8.7 0.0 0.00011 1.8 2 19 .. 85 101 .. 84 114 .. 0.94 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 3.4e-11 S-.--TTS-HHHHHHHCTTSHHHHCS-THHHHHHHHHHH CS FF 13 hkeitpkstWseikkilenDpRYlalldkseReelFedy 51 + +++ stW++ + ++ DpRYl l +++eR+++Fe++ T362447_1 30 QQ-VSAFSTWEKELHKIVFDPRYLLL-NSEERKQIFEQF 66 45.99*********************.**********86 PP == domain 2 score: 8.7 bits; conditional E-value: 0.00011 HHHHHHHHHHHS-.--TT CS FF 2 areaFkeLLkehkeitpk 19 a+e+Fk+LL+e k ++p+ T362447_1 85 AKEQFKKLLDESK-VSPR 101 8************.9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.76 # Mc/sec: 8638.95 // Query: T362447_2 [L=2295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.76 # Mc/sec: 8638.95 // Query: T362447_3 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.75 # Mc/sec: 8750.33 // Query: T143035_1 [L=6142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.42s 00:00:02.35 Elapsed: 00:00:00.85 # Mc/sec: 20672.02 // Query: T143035_2 [L=6141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.85 # Mc/sec: 20668.66 // Query: T143035_3 [L=6141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:00.78 # Mc/sec: 22523.53 // Query: T125936_1 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.69 # Mc/sec: 9403.42 // Query: T125936_2 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.68 # Mc/sec: 9537.50 // Query: T125936_3 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.72 # Mc/sec: 9007.64 // Query: T003460_1 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 4314.13 // Query: T003460_2 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3851.90 // Query: T003460_3 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 14.7 0.6 0.063 12.8 0.6 2.0 1 Ribosomal_L39 Ribosomal L39 protein Domain annotation for each model (and alignments): >> Ribosomal_L39 Ribosomal L39 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.6 3.9e-06 0.063 26 40 .. 684 698 .. 678 699 .. 0.80 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.9e-06 Ribosomal_L39 26 kvrynpkrRhWRrtk 40 + +p rRhWRrtk T003460_3 684 PILLSPSRRHWRRTK 698 5667899*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 3474.52 // Query: T230987_1 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 6007.74 // Query: T230987_2 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 7080.55 // Query: T230987_3 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 5664.44 // Query: T337205_1 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.70 # Mc/sec: 9297.70 // Query: T337205_2 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 11.5 25.8 60 3.5 0.0 10.1 13 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.077 1.3e+03 9 17 .. 1054 1062 .. 1050 1063 .. 0.88 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1073 1081 .. 1072 1081 .. 0.86 3 ? 2.7 0.0 0.0068 1.1e+02 1 17 [. 1084 1100 .. 1084 1101 .. 0.87 4 ? 3.5 0.0 0.0037 60 1 17 [. 1122 1138 .. 1122 1139 .. 0.89 5 ? 3.5 0.0 0.0037 60 1 17 [. 1141 1157 .. 1141 1158 .. 0.89 6 ? 3.5 0.0 0.0037 60 1 17 [. 1179 1195 .. 1179 1196 .. 0.89 7 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1206 1212 .. 1205 1213 .. 0.89 8 ? -2.5 0.0 0.28 4.6e+03 9 15 .. 1243 1249 .. 1241 1250 .. 0.89 9 ? 3.5 0.0 0.0037 60 1 17 [. 1254 1270 .. 1254 1271 .. 0.89 10 ? 3.5 0.0 0.0037 60 1 17 [. 1292 1308 .. 1292 1309 .. 0.89 11 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1319 1325 .. 1318 1326 .. 0.89 12 ? -1.2 0.0 0.11 1.8e+03 1 15 [. 1366 1380 .. 1366 1381 .. 0.84 13 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1392 1398 .. 1391 1399 .. 0.89 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.077 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337205_2 1054 VCPGVESSA 1062 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337205_2 1073 LCPGVESSA 1081 6*****976 PP == domain 3 score: 2.7 bits; conditional E-value: 0.0068 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337205_2 1084 WSHLPWSRVCPGVESSA 1100 77778999******977 PP == domain 4 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_2 1122 WSRLPWSGVCPGVESSA 1138 788889********977 PP == domain 5 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_2 1141 WSRLPWSGVCPGVESSA 1157 788889********977 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_2 1179 WSRLPWSGVCPGVESSA 1195 788889********977 PP == domain 7 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337205_2 1206 VCPGVES 1212 9****98 PP == domain 8 score: -2.5 bits; conditional E-value: 0.28 Ectatomin 9 vCPTlks 15 vCP ++s T337205_2 1243 VCPGVES 1249 9****98 PP == domain 9 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_2 1254 WSRLPWSGVCPGVESSA 1270 788889********977 PP == domain 10 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_2 1292 WSRLPWSGVCPGVESSA 1308 788889********977 PP == domain 11 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337205_2 1319 VCPGVES 1325 9****98 PP == domain 12 score: -1.2 bits; conditional E-value: 0.11 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP +s T337205_2 1366 WSRLPWSGVCPGAES 1380 788889*****8876 PP == domain 13 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337205_2 1392 VCPGVES 1398 9****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 8915.60 // Query: T337205_3 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 13.8 32.6 57 3.6 0.0 12.9 15 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.096 1.6e+03 9 17 .. 1009 1017 .. 1008 1018 .. 0.89 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1047 1055 .. 1046 1055 .. 0.86 3 ? 1.4 0.0 0.017 2.8e+02 1 17 [. 1058 1074 .. 1058 1075 .. 0.88 4 ? 3.2 0.0 0.0048 79 1 17 [. 1096 1112 .. 1096 1113 .. 0.87 5 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1124 1130 .. 1123 1131 .. 0.89 6 ? 2.0 0.1 0.011 1.8e+02 1 15 [. 1153 1167 .. 1153 1169 .. 0.89 7 ? 3.2 0.0 0.0048 79 1 17 [. 1191 1207 .. 1191 1208 .. 0.87 8 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1214 1223 .. 1210 1225 .. 0.88 9 ? 3.6 0.0 0.0035 57 1 17 [. 1228 1244 .. 1228 1246 .. 0.89 10 ? 1.7 0.1 0.014 2.3e+02 1 15 [. 1266 1280 .. 1266 1282 .. 0.87 11 ? 3.2 0.0 0.0048 79 1 17 [. 1304 1320 .. 1304 1321 .. 0.87 12 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1327 1336 .. 1323 1338 .. 0.88 13 ? 3.2 0.0 0.0048 79 1 17 [. 1341 1357 .. 1341 1358 .. 0.87 14 ? 1.1 0.0 0.021 3.4e+02 6 17 .. 1382 1393 .. 1381 1394 .. 0.89 15 ? -2.3 0.0 0.25 4.1e+03 6 14 .. 1400 1408 .. 1400 1410 .. 0.85 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.096 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337205_3 1009 VCPGVESSA 1017 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337205_3 1047 LCPGVESSA 1055 6*****976 PP == domain 3 score: 1.4 bits; conditional E-value: 0.017 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_3 1058 WSRLPWSRVCPGMESSA 1074 7888899*******977 PP == domain 4 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337205_3 1096 WSHLPWSGVCPGVESSA 1112 7777899*******977 PP == domain 5 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337205_3 1124 VCPGVES 1130 9****98 PP == domain 6 score: 2.0 bits; conditional E-value: 0.011 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP ++s T337205_3 1153 WSRLPWSGVCPGVES 1167 788889*******98 PP == domain 7 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337205_3 1191 WSHLPWSGVCPGVESSA 1207 7777899*******977 PP == domain 8 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337205_3 1214 WSGVCPGVES 1223 889*****98 PP == domain 9 score: 3.6 bits; conditional E-value: 0.0035 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337205_3 1228 WSRLPWSGVCPGVESSA 1244 788889********987 PP == domain 10 score: 1.7 bits; conditional E-value: 0.014 Ectatomin 1 iskkvklTvCPTlks 15 +s + vCP ++s T337205_3 1266 WSHLPWSGVCPGVES 1280 7777899******98 PP == domain 11 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337205_3 1304 WSHLPWSGVCPGVESSA 1320 7777899*******977 PP == domain 12 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337205_3 1327 WSGVCPGVES 1336 889*****98 PP == domain 13 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337205_3 1341 WSHLPWSGVCPGVESSA 1357 7777899*******977 PP == domain 14 score: 1.1 bits; conditional E-value: 0.021 Ectatomin 6 klTvCPTlksmA 17 + vCP ++s A T337205_3 1382 WSGVCPGVESSA 1393 788******977 PP == domain 15 score: -2.3 bits; conditional E-value: 0.25 Ectatomin 6 klTvCPTlk 14 + vCP ++ T337205_3 1400 WSGVCPGVE 1408 788***998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 9166.74 // Query: T324818_1 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 8105.69 // Query: T324818_2 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 6754.74 // Query: T324818_3 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.73 # Mc/sec: 6662.21 // Query: T172330_1 [L=1623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6539.62 // Query: T172330_2 [L=1623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 23.9 0.0 5.8e-05 23.2 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 3.6e-09 5.8e-05 5 54 .. 377 427 .. 374 434 .. 0.86 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 3.6e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAviea 54 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172330_2 377 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRA 427 68*******99999******766766.557778999**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 6448.79 // Query: T172330_3 [L=1623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 7035.04 // Query: T344693_1 [L=1488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.8 11.8 0.26 11.6 11.8 1.5 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.39 9.3 17.6 0.63 8.6 17.6 1.2 1 Presenilin Presenilin 0.99 7.9 54.7 1.3 7.5 54.7 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 2.8 6.5 9.0 4 6.0 9.0 1.1 1 SAPS SIT4 phosphatase-associated protein 6.7 6.6 13.6 11 6.0 13.6 1.2 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 11.8 7.9e-05 0.26 20 69 .. 326 375 .. 253 402 .. 0.56 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 7.9e-05 RNA_pol_Rpc4 20 vsaaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkk 69 ++++ ++k+e++++++ k+k ++e+k++ke ++e+e kke kke kk+++ T344693_1 326 KEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERE 375 22222222222222222222222222333333333333333333322222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 17.6 0.00019 0.63 236 307 .. 315 386 .. 305 470 .. 0.55 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00019 Presenilin 236 kaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseee 307 ++++++e++k++e++++e+ke+e+e+e ++k ++++++++e+++e+++++++++e+++e+e++++++++++e T344693_1 315 ERKRKKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERERKKERKKRKKE 386 122222222222222222222222222222222222222222222222222122221111111111111111 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 54.7 0.0004 1.3 127 212 .. 312 394 .. 308 422 .. 0.53 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0004 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 127 ekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgkee 212 +++ k +k+++++kek+r+++kekekek++kk++++e++k++er+k++er+k++kk +++k+++++ke+kk k++k+ sgk++ T344693_1 312 KRKERKRKKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKK---ERKKERERKKERKKRKKEKRLSGKAR 394 222222223333335555555555555555555555555555555555555444442...24444444444444444444444443 PP >> SAPS SIT4 phosphatase-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.0 0.0012 4 249 324 .. 317 381 .. 255 415 .. 0.50 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0012 SAPS 249 erDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseede 324 +r ++r++ +e ++ ++++ e+++e+e +++ +++ ++++++++++e k++ ++e++++ e ++e + T344693_1 317 KRKKERKKRKE------KKRKEKK-----EKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERERKKERK 381 22222222222......1111111.....11111111111111111111111111111111111111111111111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 13.6 0.0033 11 128 194 .. 319 387 .. 272 417 .. 0.53 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0033 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee..eaeekkakvr 194 ++e++k +e++ ++++++e++ke+++++++e++++++++k+++ +++ + e+k+++e ++ +k++k + T344693_1 319 KKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERErkKERKKRKKEK 387 222222222222233333333333332222222222222222222222222211111212222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2263 (0.138783); expected 326.1 (0.02) Passed bias filter: 749 (0.045934); expected 326.1 (0.02) Passed Vit filter: 428 (0.026248); expected 16.3 (0.001) Passed Fwd filter: 82 (0.00502882); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.60u 0.41s 00:00:03.01 Elapsed: 00:00:00.91 # Mc/sec: 4677.93 // Query: T344693_2 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2100 (0.128787); expected 326.1 (0.02) Passed bias filter: 685 (0.0420091); expected 326.1 (0.02) Passed Vit filter: 412 (0.0252668); expected 16.3 (0.001) Passed Fwd filter: 68 (0.00417024); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.47u 0.45s 00:00:02.92 Elapsed: 00:00:00.87 # Mc/sec: 4889.72 // Query: T344693_3 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 10.3 18.0 0.28 9.8 18.0 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 18.0 1.7e-05 0.28 234 312 .. 311 385 .. 297 432 .. 0.40 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 1.7e-05 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeee 312 ++++++e+e++k+++++++++ke+++e+e ++++++++++e+e+++e+++++++++e+++e+++++++++++ +e+ T344693_3 311 KEERKKEKERKKEKKRKEKKRKERKRERERKKEKRKERKKEKERKKERKRKKERKKERKKERKRKKERKKEK----KER 385 122222222222222222222222222222222222222222222111111111111111111111111111....111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2180 (0.133693); expected 326.1 (0.02) Passed bias filter: 708 (0.0434196); expected 326.1 (0.02) Passed Vit filter: 444 (0.0272292); expected 16.3 (0.001) Passed Fwd filter: 88 (0.00539679); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.67u 0.49s 00:00:03.16 Elapsed: 00:00:00.81 # Mc/sec: 5251.92 // Query: T004099_1 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 6167.61 // Query: T004099_2 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 6078.23 // Query: T004099_3 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1431 (0.0877591); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.42s 00:00:01.81 Elapsed: 00:00:00.75 # Mc/sec: 5591.97 // Query: T277871_1 [L=1705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 753 (0.0461793); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 6774.60 // Query: T277871_2 [L=1705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 762 (0.0467313); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.70 # Mc/sec: 6968.16 // Query: T277871_3 [L=1704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 754 (0.0462406); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:00.80 # Mc/sec: 6093.57 // Query: T332095_1 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 3529.82 // Query: T332095_2 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 3756.60 // Query: T332095_3 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 3883.94 // Query: T369029_1 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 4036.95 // Query: T369029_2 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.69 # Mc/sec: 3159.35 // Query: T369029_3 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 3758.54 // Query: T310722_1 [L=1505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 7553.60 // Query: T310722_2 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-08 32.3 0.0 1.7e-07 31.3 0.0 1.6 1 rve Integrase core domain 1.9e-07 31.1 0.1 4.4e-07 29.9 0.1 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.0047 16.5 0.0 0.011 15.4 0.0 1.6 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.0 3.2e-11 1.7e-07 72 117 .. 106 151 .. 104 153 .. 0.96 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 3.2e-11 rve 72 sDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 sDn +++++ +++ ++ lgi++++++++rpq+ kvEr+n+t+k+ T310722_2 106 SDNRPAFVADLVQKTAKALGITWKLHAAYRPQSSRKVERMNQTIKN 151 9*******************************************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.9 0.1 8.1e-11 4.4e-07 1 39 [] 18 56 .. 18 56 .. 0.98 Alignments for each domain: == domain 1 score: 29.9 bits; conditional E-value: 8.1e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 Hk+tHlG++ l++ll r++++ + ++++ V+++C +C+ T310722_2 18 HKTTHLGQESLEKLLGRYFYISLLPALAKAVAQQCITCR 56 **************************************5 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.0 2e-06 0.011 2 35 .. 125 158 .. 124 169 .. 0.86 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 2e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellneel 35 gi++++ a ++Pq +vE++n+t+++ l + + T310722_2 125 GITWKLHAAYRPQSSRKVERMNQTIKNSLRKVCH 158 9*************************99877655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.57 # Mc/sec: 7418.43 // Query: T310722_3 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 6829.66 // Query: T337784_1 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 3110.59 // Query: T337784_2 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.36 10.4 29.6 0.54 9.9 29.6 1.2 1 Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) Domain annotation for each model (and alignments): >> Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 29.6 3.3e-05 0.54 84 215 .. 60 200 .. 55 201 .. 0.81 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 3.3e-05 Plasmodium_HRP 84 ahhahhaadahhahhaadahhahhaadaahahhaadahh...ahhaadahhaadahhaayahh...ahhaadahhaadahhaadahhaadahhaa 172 ah + a ++ a h a h+ ++ a h+ a h a h+ a h+ a h+ + h a h+ a h+ a h+ a h+ a h+ T337784_2 60 AHQSGTAPHSGTAPHPGMASHSETIPHSGMASHSGTAPHsgtASHSGTAPHSGTASHSGKVPHa*tASHSGTAPHSVTASHSGMAPHSGRAPHSG 154 4555555555556677777777766666667777777665668888889999999999999888999************************9976 PP Plasmodium_HRP 173 d...shtahhaadahhaadahhaddahhdadahhaadahhaadahh 215 s + h++ a h a h++ a h++ + h++ a + +ah T337784_2 155 IaprSGMVPHSETAPHPGTALHSEMATHSGTSPHSGMAPRSGTAHS 200 5455888999999*999999999************99999999995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 2684.48 // Query: T337784_3 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 2964.86 // Query: T051598_1 [L=2272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.74 # Mc/sec: 8783.52 // Query: T051598_2 [L=2271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 10650.73 // Query: T051598_3 [L=2271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 11812.63 // Query: T227875_1 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.77 # Mc/sec: 12565.36 // Query: T227875_2 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.80 # Mc/sec: 12094.16 // Query: T227875_3 [L=3381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.77 # Mc/sec: 12561.64 // Query: T167927_1 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-22 78.0 0.3 9.7e-22 77.4 0.3 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 6.2e-16 57.7 1.3 6.2e-16 57.7 1.3 2.0 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 1e-11 44.9 3.6 1.6e-11 44.3 3.6 1.2 1 GP41 Retroviral envelope protein 0.00031 20.6 0.0 0.00053 19.8 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 0.00095 19.1 0.5 0.0017 18.2 0.5 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.4 0.3 3e-25 9.7e-22 1 71 [. 714 784 .. 714 796 .. 0.94 Alignments for each domain: == domain 1 score: 77.4 bits; conditional E-value: 3e-25 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevpt 71 +vtw+d p+evy n+s w+pgp+ddr p++p eg ++ is+g+++ppiclg+a c p q wl +p T167927_1 714 PVTWLDPPVEVYTNNSSWMPGPTDDRGPSHPHREGTVMSISLGFKHPPICLGKATSCPPPQYQSWLAIMPG 784 69****************************************************************98885 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.7 1.3 1.9e-19 6.2e-16 2 34 .. 492 524 .. 491 526 .. 0.92 2 ? -5.7 2.2 5 1.6e+04 12 20 .. 623 631 .. 623 631 .. 0.85 Alignments for each domain: == domain 1 score: 57.7 bits; conditional E-value: 1.9e-19 --B-TTT-SSBS-TTT---SEEGGGEE---XXX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsaneg 34 pgl ++CkkgkHwa++Chskfdk+Gnp s n T167927_1 492 PGLYLKCKKGKHWANQCHSKFDKDGNPISRNAM 524 8999************************98765 PP == domain 2 score: -5.7 bits; conditional E-value: 5 BS-TTT--- CS zf-CCHC_5 12 kHwardChs 20 +Hw + C s T167927_1 623 THWWQHCPS 631 7**999976 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.3 3.6 5e-15 1.6e-11 20 100 .. 1087 1165 .. 1079 1175 .. 0.92 Alignments for each domain: == domain 1 score: 44.3 bits; conditional E-value: 5e-15 HHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXH CS GP41 20 sknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnnt 100 +kn + + Q +id+k+ +++n l+ v+ +G++vasl+ ++l+C n C+T+ pyn+ + +Wer+kk++ W++t T167927_1 1087 QKNSTLLWNSQTKIDQKIVNQINDLQPTVMWVGDQVASLEYGMQLKCDWNTSDFCITPHPYNELDhEWERIKKSI---WKDT 1165 678888999***************************************************************986...5554 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 1.6e-07 0.00053 43 113 .. 276 348 .. 266 352 .. 0.83 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 1.6e-07 Gag_p24 43 r..vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalek 113 ++ ++l+ +++w +e + + ++++pi+++ d+ll g a + q+ ++ +v+ q+r ++++a+ek T167927_1 276 AclAPAQFLQfKTWWPDEASIQ-AACSAQIQPPINVTTDQLLRVGGWAALDAQVVMQDDVIDQLRGVCIRAWEK 348 2236677778889999998888.677778889**************999888888888**************98 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.5 5.3e-07 0.0017 23 87 .] 643 704 .. 640 704 .. 0.75 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 5.3e-07 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t + +pptw q+kkl+q+ l + + t + ++a++ ++m + + +++ ++++++a T167927_1 643 NTHRKQPPTWGQIKKLSQMVEENLRKAGQAVTVSNF-MTAVITIAM--SIPSARTDKKSNYTHWA 704 588899***************999988777776554.555555555..55666677778888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 5741.81 // Query: T167927_2 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-29 100.6 0.0 5.3e-24 85.1 0.0 2.2 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein 1.3e-08 34.7 0.0 2.2e-08 33.9 0.0 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 5.8e-06 25.9 0.1 1.2e-05 24.9 0.1 1.5 1 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 7.2 6.6 5.4 41 4.2 3.2 2.4 2 CytB6-F_Fe-S Cytochrome B6-F complex Fe-S subunit Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 1.2e-05 0.049 1 39 [. 232 272 .. 232 282 .. 0.83 2 ! 85.1 0.0 1.3e-27 5.3e-24 112 205 .] 347 440 .. 338 440 .. 0.93 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.2e-05 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalae..qalpkdlek 39 +k L+++k+a++qygp sp+v+ l +++a+ q++p d T167927_2 232 FKLLNEFKQAINQYGPRSPFVMGLSKNVATssQMIPIDGTL 272 689**********************9997522668888655 PP == domain 2 score: 85.1 bits; conditional E-value: 1.3e-27 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCqgvggavhkarvl 205 +ki + g++ + ++ ++QGpkEpy df+a l+++l+k++ad +a+d++++ La++NANp+Cq++l ++ ++ l d+++aC+ +gg hka +l T167927_2 347 KKISSGGEQYPYFSAVKQGPKEPYADFIAWLQESLKKVIADSTAQDIVLQLLAFDNANPKCQAAL*PVRG-KAHLVDYIKACDSIGGNLHKATLL 440 78999999999***************************************************99776544.689******************986 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.9 0.0 5.5e-12 2.2e-08 105 162 .. 810 865 .. 785 868 .. 0.81 Alignments for each domain: == domain 1 score: 33.9 bits; conditional E-value: 5.5e-12 HERV-K_env_2 105 kfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncs 162 +rp+ c k+ s++ +vl+we+c+a a +l++ +g iidw+p+g f nc+ T167927_2 810 AYRPQKPIC-KQDWTRSEKMNVLIWEDCIAGQAEVLHD-SYGIIIDWSPKGMFSMNCT 865 478875555.55566788899*************9975.79****************7 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.1 2.9e-09 1.2e-05 43 83 .. 61 101 .. 61 102 .. 0.88 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 2.9e-09 Gag_p10 43 GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevL 83 G +d+e+W+ vg+ lk +a + g e ip++v+s+w+li++ L T167927_2 61 GNMDVEVWEEVGSALK-KAYKDGaEDIPITVWSVWALIHSTL 101 789*************.5555666**************9988 PP >> CytB6-F_Fe-S Cytochrome B6-F complex Fe-S subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 0.053 2.1e+02 4 14 .. 482 492 .. 479 494 .. 0.85 2 ? 4.2 3.2 0.01 41 14 32 .. 1054 1072 .. 1052 1074 .. 0.90 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.053 CytB6-F_Fe-S 4 PDmsrRqllNl 14 P m++R llN T167927_2 482 PLMEKRKLLNQ 492 67********5 PP == domain 2 score: 4.2 bits; conditional E-value: 0.01 CytB6-F_Fe-S 14 lllvGaialtaaaaLyPvv 32 l+++G ia+ta+aa+ +v+ T167927_2 1054 LIIMGLIAVTATAAVAGVA 1072 899************9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 6080.33 // Query: T167927_3 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0001 21.9 0.0 0.00019 21.1 0.0 1.3 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 1.1e-08 0.00019 2 42 .. 20 60 .. 19 62 .. 0.88 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 1.1e-08 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee 42 ++ +l++ ++Ll++ G+kvs+ + l +++++ve++cPWFp e T167927_3 20 HKAYLSLPRQLLRKGGVKVST-S*LMQLFSMVEKYCPWFPTE 60 577999999**********96.6667899***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.60 # Mc/sec: 6789.70 // Query: T255255_1 [L=1525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46 # Mc/sec: 9484.27 // Query: T255255_2 [L=1524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43 # Mc/sec: 10139.31 // Query: T255255_3 [L=1524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.47 # Mc/sec: 9276.39 // Query: T052993_1 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 4893.21 // Query: T052993_2 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 4893.21 // Query: T052993_3 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4793.35 // Query: T296167_1 [L=2994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.63 # Mc/sec: 13595.75 // Query: T296167_2 [L=2994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.82 # Mc/sec: 10445.52 // Query: T296167_3 [L=2994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.33s 00:00:01.69 Elapsed: 00:00:00.63 # Mc/sec: 13595.75 // Query: T016083_1 [L=2595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.64 # Mc/sec: 11599.77 // Query: T016083_2 [L=2595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-47 159.3 2.8 1.2e-46 158.9 2.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.9 2.8 7.5e-51 1.2e-46 1 222 [] 1706 1962 .. 1706 1962 .. 0.95 Alignments for each domain: == domain 1 score: 158.9 bits; conditional E-value: 7.5e-51 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk+ a+r++ +++kl++++q+ f pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T016083_2 1706 IPKPGrdttkKENFRPISLMNIDAKILNKIPANRIQRHIKKLIHHDQVSFIPGIQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQLFML 1803 899999999999*******************************************99999***99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + ++i++++ ++++++ +ng++ e ++ k+g++qG++lS llfn++++ l r +r++ ++v+l+++aDD++++ ++ T016083_2 1804 KTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSSLLFNIVLEVLARAIRQQKeikgiqlgkEEVKLSLFADDMIVYLENpI 1901 ********************************99**************************************************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + q+ll+ ++++ k sg+kin + ++++l ++ s+++kyLG++l T016083_2 1902 VSTQNLLKLISNFSKVSGYKINVQTSQAFLHtnnrqtesqimRElpftiASKRIKYLGIQL 1962 77***************************98999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 10169.66 // Query: T016083_3 [L=2594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 20.6 0.1 0.00044 19.7 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.1 2.7e-08 0.00044 1 19 [] 2429 2447 .. 2429 2447 .. 0.94 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 2.7e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+ +WM+LE+ ILS+ sQ T016083_3 2429 SFVRTWMKLETVILSKLSQ 2447 6888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.44s 00:00:01.61 Elapsed: 00:00:00.79 # Mc/sec: 9393.66 // Query: T052034_1 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1251 (0.0767202); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 3688.74 // Query: T052034_2 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1064 (0.0652521); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 3528.36 // Query: T052034_3 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1552 (0.0951797); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.42s 00:00:01.55 Elapsed: 00:00:00.80 # Mc/sec: 3043.21 // Query: T370526_1 [L=2231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 12274.06 // Query: T370526_2 [L=2230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.50 # Mc/sec: 12759.30 // Query: T370526_3 [L=2230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.62 # Mc/sec: 10289.76 // Query: T330814_1 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-05 23.0 47.1 0.41 10.9 0.9 9.0 8 FlaC_arch Flagella accessory protein C (FlaC) 0.00064 20.0 22.6 1.1 9.4 0.2 5.9 6 HrpB7 Bacterial type III secretion protein (HrpB7) 0.0012 18.6 46.6 0.004 16.9 12.0 3.6 3 ERM Ezrin/radixin/moesin family 0.0028 17.0 0.0 2.2 7.5 0.0 2.8 3 Reo_sigmaC Reovirus sigma C capsid protein ------ inclusion threshold ------ 0.011 15.6 36.4 0.15 12.0 1.4 4.4 3 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein C 0.54 10.1 23.5 1.6 8.6 4.4 4.8 4 DUF1664 Protein of unknown function (DUF1664) 1.1 9.5 5.6 4.8 7.4 0.4 3.7 3 BLOC1_2 Biogenesis of lysosome-related organelles com Domain annotation for each model (and alignments): >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.9 0.00018 0.41 2 39 .. 142 179 .. 141 182 .. 0.93 2 ! 7.8 3.2 0.0017 3.9 3 37 .. 185 219 .. 183 262 .. 0.92 3 ? -0.4 0.1 0.6 1.4e+03 8 33 .. 504 529 .. 491 533 .. 0.55 4 ? 0.8 1.1 0.25 5.9e+02 13 28 .. 544 559 .. 512 571 .. 0.51 5 ? 2.7 6.5 0.066 1.5e+02 8 37 .. 560 589 .. 544 626 .. 0.64 6 ! 10.0 0.4 0.00033 0.78 6 39 .. 642 675 .. 634 683 .. 0.55 7 ! 8.8 0.4 0.00081 1.9 2 37 .. 666 701 .. 665 710 .. 0.90 8 ! 6.8 0.6 0.0034 8 2 37 .. 708 743 .. 707 753 .. 0.89 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00018 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenVkd 39 i+++E +++ ++ e++t+++e ++ +v ++e +V + T330814_1 142 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGM 179 799******************************99965 PP == domain 2 score: 7.8 bits; conditional E-value: 0.0017 FlaC_arch 3 delEnklsklsteletvkkeneelsksveeleenV 37 + +E +++ +++e++++++e ++ +v ++e +V T330814_1 185 GMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEAEV 219 67999999999999999999999999999999888 PP == domain 3 score: -0.4 bits; conditional E-value: 0.6 FlaC_arch 8 klsklsteletvkkeneelsksveel 33 +++ + e+++ ++e ++ +v ++ T330814_1 504 EVGMREGEVGMREAEVGMMEAEVGMM 529 44444444445555554444444444 PP == domain 4 score: 0.8 bits; conditional E-value: 0.25 FlaC_arch 13 steletvkkeneelsk 28 + e++++++e ++ T330814_1 544 EAEIGMMEAEVGMREE 559 2344444444444444 PP == domain 5 score: 2.7 bits; conditional E-value: 0.066 FlaC_arch 8 klsklsteletvkkeneelsksveeleenV 37 +++ ++ e++++++e ++ +v ++e +V T330814_1 560 EVGMMEAEVGMMEAEVGMMEAEVGMMEAEV 589 444444444444444444444444444433 PP == domain 6 score: 10.0 bits; conditional E-value: 0.00033 FlaC_arch 6 EnklsklsteletvkkeneelsksveeleenVkd 39 E +++ ++ e+++v++e ++ +v ++e +V + T330814_1 642 EAEVGMVEAEVGMVEAEVGMMEAEVGMMEAEVGM 675 5555555555555555555555555555555433 PP == domain 7 score: 8.8 bits; conditional E-value: 0.00081 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenV 37 ++ +E +++ ++ +++v++e ++ +v ++e +V T330814_1 666 VGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEV 701 56799**************************99988 PP == domain 8 score: 6.8 bits; conditional E-value: 0.0034 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenV 37 ++ +E ++++++ e+++ ++e ++ +v ++e +V T330814_1 708 VGMMEAEVGRMEAEVGMREAEVGMMEVEVGMMEAEV 743 5679****************************9988 PP >> HrpB7 Bacterial type III secretion protein (HrpB7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.0 0.1 0.0055 13 74 123 .. 142 191 .. 136 205 .. 0.55 2 ! 9.4 0.2 0.00049 1.1 82 136 .. 206 260 .. 195 262 .. 0.63 3 ? 0.7 1.2 0.24 5.5e+02 86 131 .. 489 534 .. 474 557 .. 0.56 4 ? 4.5 0.3 0.016 37 86 123 .. 566 603 .. 550 623 .. 0.46 5 ? 4.2 0.1 0.02 47 85 130 .. 642 687 .. 632 699 .. 0.52 6 ! 8.8 0.5 0.0008 1.9 81 129 .. 680 728 .. 671 751 .. 0.85 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0055 HrpB7 74 ylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqi 123 + +++a +++++++v+ +eae+ ++++ e++v +++++ ++a++ T330814_1 142 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEV 191 33444444555555555555555555555555555555555555555554 PP == domain 2 score: 9.4 bits; conditional E-value: 0.00049 HrpB7 82 dvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrra 136 +++e++v+ +eae+ ++++ e++v ++++++ + ++++ ++r+er +++ T330814_1 206 GMMEAEVGMMEAEVGMREAEVGMIEAEVGLREEEVGMWKQRLERWKQRLERWKQK 260 5556666666666666666666666666666666666666666666666666555 PP == domain 3 score: 0.7 bits; conditional E-value: 0.24 HrpB7 86 grvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerie 131 ++v+ +eae+ ++++ +e +v ++++++ ++a++ +++ + T330814_1 489 AEVGLMEAEVGLREAEVGMREGEVGMREAEVGMMEAEVGMMEAEAG 534 4455555555555555555555555555555555555544444333 PP == domain 4 score: 4.5 bits; conditional E-value: 0.016 HrpB7 86 grvraaeaelaaarqaldaaedavaatarkiaRndaqi 123 ++v+ +eae+ ++++ e++v +++++ ++a++ T330814_1 566 AEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEV 603 33333333333333333333333333333333333333 PP == domain 5 score: 4.2 bits; conditional E-value: 0.02 HrpB7 85 egrvraaeaelaaarqaldaaedavaatarkiaRndaqidacreri 130 e++v+ +eae+ ++++ e++v +++++ ++a + +++ + T330814_1 642 EAEVGMVEAEVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEV 687 4555555555555555555555555555555555555444444433 PP == domain 6 score: 8.8 bits; conditional E-value: 0.0008 HrpB7 81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrer 129 ++++e++v+ +eae+ ++++ +e++v +++++R++a++ ++ T330814_1 680 VGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAE 728 6789999999999999999999999999999999999999998766555 PP >> ERM Ezrin/radixin/moesin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 12.0 1.7e-06 0.004 1 126 [. 136 261 .. 136 262 .. 0.93 2 ! 8.1 12.1 0.00085 2 8 111 .. 522 623 .. 515 626 .. 0.80 3 ! 8.4 2.9 0.00067 1.6 23 122 .. 647 748 .. 637 779 .. 0.71 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 1.7e-06 ERM 1 eeaerekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeser 100 e +e e + +e + ++ e+ ++++ e ++ ++ + ++e e ++e++ +e e ++ + + e+e +e+++ e+e+ +e e+ T330814_1 136 ETMEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEAEVGMREAEVGMIEAEVGL 235 56788888999999999999999999999999999999999999999999999999999999************************************** PP ERM 101 reeeaeklkeeleeareaeeeakekl 126 reee+ ++k++le+ ++++e+ k+kl T330814_1 236 REEEVGMWKQRLERWKQRLERWKQKL 261 *********************99998 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00085 ERM 8 releerLkqlqeeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeserreeeaek 107 e e + ++ ea +++++ e ++ ++ + + eee ++e++ +e+e ++ + + e+e +e+++ +e+e+ +e e+ +re+e+ + T330814_1 522 MEAEVGM--MEAEAGMREAEAGMREAEIGMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEAEVGMREAEVGM 619 4444445..555555555555555566788999999999999999***************************************************9988 PP ERM 108 lkee 111 ++e T330814_1 620 IEAE 623 7776 PP == domain 3 score: 8.4 bits; conditional E-value: 0.00067 ERM 23 kaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeserreeeaeklkee..leeareaee 120 + +++ e ++ ++ + ++e e ++e++ +e+e ++ + + e+e e+++ +e+e+ r+e e+ +re+e+ +++ e ++ea+ + T330814_1 647 MVEAEVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAEVGMMEVEvgMMEAEVGMR 746 5555555556666677777777778888888888888888888888888888888888888888888888888888888888877777722333333334 PP ERM 121 ea 122 ea T330814_1 747 EA 748 44 PP >> Reo_sigmaC Reovirus sigma C capsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.5 0.0 0.00093 2.2 40 138 .. 138 236 .. 136 252 .. 0.75 2 ? -0.4 0.0 0.23 5.3e+02 41 97 .. 551 607 .. 542 624 .. 0.55 3 ! 5.4 0.0 0.004 9.3 49 147 .. 643 741 .. 631 759 .. 0.52 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00093 Reo_sigmaC 40 leaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsan 138 +ea ++++ v+ + +++ ++a+++ + ++ ++ae+ +++ev ++ v + e+ + v +a + ++ ev +++ ++++v + T330814_1 138 MEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEAEVGMREAEVGMIEAEVGLR 236 677788888888888888888888888888888888888888888888888888888888888888888888888888888777777777777776655 PP == domain 2 score: -0.4 bits; conditional E-value: 0.23 Reo_sigmaC 41 eaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdsls 97 ea + +e v+ + +++ ++a+++ + ++ ++ae+ +++ev ++ v + T330814_1 551 EAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLME 607 444444455555555555555555555555555555555555555555554444433 PP == domain 3 score: 5.4 bits; conditional E-value: 0.004 Reo_sigmaC 49 esvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdlee 147 v+ + +++ ++a+++ + ++ ++ae+ ++++v ++ v + +e+ + v ++a + ++ ev +++ +++v +++ +e T330814_1 643 AEVGMVEAEVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAEVGMMEVEVGMMEA 741 344445555555555555555555555555555555555555555555555555555555555555555555555544444444444444444444444 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 11.1 0.00077 1.8 22 101 .. 138 217 .. 135 262 .. 0.53 2 ? 7.5 5.0 0.0016 3.6 25 96 .. 546 617 .. 535 624 .. 0.87 3 ? 12.0 1.4 6.4e-05 0.15 20 118 .. 653 753 .. 638 760 .. 0.75 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00077 CENP-F_leu_zip 22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLes 101 ++ +e +e+e+ m++++ ++ e+ t aev +++e+ ++++e +e+++ + e +e e+ + +v +e+ T330814_1 138 MEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEA 217 34455555555555555555555555555555555555555555555555555555555544444444444444443333 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0016 CENP-F_leu_zip 25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqerv 96 + +e+e+ m ee+ ++ e+ aev +++e+ ++++e +e+++v + e +e e+ +v T330814_1 546 EIGMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEAEVGMREAEV 617 67889***********9999999999***************************9999999988887777766 PP == domain 3 score: 12.0 bits; conditional E-value: 6.4e-05 CENP-F_leu_zip 20 dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe..slnsslenllee 112 ++ v +e+e+ m+e++ ++ ++ aev +++e+ ++++e e+++ + e +e e+ +v +e ++ e ++e T330814_1 653 GMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAEVGMMEveVGMMEAEVGMRE 747 55677788899999999999999999999999999999999999999999999999999999999999988888777655400444555555555 PP CENP-F_leu_zip 113 kEqekv 118 +E ++ T330814_1 748 AEVAMM 753 555555 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 4.4 0.00067 1.6 65 121 .. 139 195 .. 136 231 .. 0.58 2 ? 5.1 0.9 0.0085 20 69 121 .. 548 600 .. 525 614 .. 0.65 3 ? 6.0 0.9 0.0042 9.9 67 116 .. 651 700 .. 639 707 .. 0.58 4 ? 0.5 0.2 0.22 5.1e+02 82 120 .. 701 739 .. 686 745 .. 0.47 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00067 DUF1664 65 sqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +++i+++++++ +k+ +++ev +++ ++ ++ +v +++ v +e+ + ie T330814_1 139 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIE 195 344555555555555555555555555555555555555555555555555444444 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0085 DUF1664 69 drvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +++++ +e +++ev ++ ++ ++ +v +++ v +e+ + +e T330814_1 548 GMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMME 600 45555555555555555555666666666666666555555555555555554 PP == domain 3 score: 6.0 bits; conditional E-value: 0.0042 DUF1664 67 ridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLesk 116 ++ v++++ +++ +++ev ++ d+ ++ +v v++ v +e+ T330814_1 651 EVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAE 700 44445555555555555566666666666666666666666666555554 PP == domain 4 score: 0.5 bits; conditional E-value: 0.22 DUF1664 82 skeikeevtevredlseikedvesvkeavegLeskleei 120 ++ev ++ ++ +++ +v ++ v +e + + T330814_1 701 VGMREAEVGMMEAEVGRMEAEVGMREAEVGMMEVEVGMM 739 233334455555555555555555555555555444444 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.4 0.002 4.8 12 86 .. 139 210 .. 135 226 .. 0.45 2 ? 1.1 0.1 0.2 4.7e+02 59 87 .. 560 588 .. 541 609 .. 0.59 3 ? -0.1 0.0 0.47 1.1e+03 69 93 .. 654 678 .. 641 701 .. 0.61 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.002 BLOC1_2 12 eaeleatvedyklLekmNkaasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 eae+e +++ ++++ ++++++ ++ ++ +e+e+ +++ e+ + ++ ie +v +e+ v ++++ T330814_1 139 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEA---EVGMMEAEVGMIEVEVGMIEAEVGMMEA 210 44444444444444444444444444444444444444444444...4444444444444444444444444443 PP == domain 2 score: 1.1 bits; conditional E-value: 0.2 BLOC1_2 59 elqpylqqidqiekqvteLeeavseLDey 87 e+ + ++ +e++v +e+ v ++++ T330814_1 560 EVGMMEAEVGMMEAEVGMMEAEVGMMEAE 588 33333344444444444444444444433 PP == domain 3 score: -0.1 bits; conditional E-value: 0.47 BLOC1_2 69 qiekqvteLeeavseLDeyskeLEs 93 +e++v +e+ v ++++ + +E+ T330814_1 654 MVEAEVGMMEAEVGMMEAEVGMMEA 678 4444555555555444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.86u 0.41s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 3555.60 // Query: T330814_2 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 4444.50 // Query: T330814_3 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.88 9.9 5.6 28 4.9 5.6 2.7 1 Fez1 Fez1 Domain annotation for each model (and alignments): >> Fez1 Fez1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 5.6 0.0017 28 35 108 .. 269 342 .. 240 486 .. 0.58 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0017 Fez1 35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsl 108 a++r +a++ e+e+ +e++ ++e+ e+e+ +++e+ l + +++ +e+e+ + e+ ++++ T330814_3 269 MREAEVRMREAEVAMMEAEVAMIEAEDGLTEAEVGMREAEVGMREEEVGLREAEIGMMEAEVGMMEAEVGMMEA 342 33333333333333333333333333333333333333333333444444444444444444433333333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.69 # Mc/sec: 3607.13 // Query: T239479_1 [L=869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-52 176.5 1.8 1e-51 175.4 1.8 1.6 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0028 17.2 0.3 0.0064 16.0 0.3 1.5 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.19 12.1 8.8 0.39 11.1 0.0 3.4 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.4 1.8 1.9e-55 1e-51 1 222 [] 202 458 .. 202 458 .. 0.95 Alignments for each domain: == domain 1 score: 175.4 bits; conditional E-value: 1.9e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l++ T239479_1 202 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKT 301 899999999999***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelq 181 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ ++q T239479_1 302 LNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpMVSAQ 401 ******************************99*********************************99***************************6666** PP HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 182 elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239479_1 402 NLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 458 *************************99999988877761156678*********986 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.3 1.2e-06 0.0064 47 111 .. 527 596 .. 516 599 .. 0.78 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.2e-06 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239479_1 527 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 596 5678888985444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 1.5 3 1.6e+04 11 20 .. 571 580 .. 569 587 .. 0.72 2 ? 11.1 0.0 7.2e-05 0.39 3 30 .. 638 665 .. 636 667 .. 0.90 3 ? 5.2 0.3 0.0048 26 23 50 .. 734 761 .. 728 763 .. 0.86 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 3 YlbE 11 pyWYrkLnRn 20 +WY + nR+ T239479_1 571 TAWYWYQNRD 580 5788888887 PP == domain 2 score: 11.1 bits; conditional E-value: 7.2e-05 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239479_1 638 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 665 677999*******************985 PP == domain 3 score: 5.2 bits; conditional E-value: 0.0048 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239479_1 734 LISRIYNELKQIYKKKTNNHIKKWAKDM 761 5778889***************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3655.97 // Query: T239479_2 [L=869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 3884.47 // Query: T239479_3 [L=868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 3448.89 // Query: T081234_1 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-54 184.5 2.6 2.4e-54 184.5 2.6 2.0 2 Transposase_22 L1 transposable element 0.00015 21.4 0.0 0.0003 20.5 0.0 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 184.5 2.6 2.9e-58 2.4e-54 166 353 .. 923 1109 .. 920 1123 .. 0.93 2 ? -0.1 0.5 0.036 3e+02 303 359 .. 1910 1974 .. 1905 1980 .. 0.64 Alignments for each domain: == domain 1 score: 184.5 bits; conditional E-value: 2.9e-58 HHHHHHHHHHHHHHHHHH.HHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEES CS Transposase_22 166 vkerekrkkileqslqvi.qdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrtt 256 k ++kr+++ +qslq++ + + Pnl +iG++e+e e+ k len++ iie nfP l+++++++iqe++ tP ++ kr+ +r i++r++ T081234_1 923 MKTKKKRIRKYKQSLQEV*D-Y-FK*PNLVVIGIPEQE-ENSKSLENTFGRIIEGNFPSLARDLDIQIQEAQTTPGKFIAKRSLPRCIVIRLS 1012 57888999999999998554.3.389**********87.789*************************************************** PP SHHHHHHHHHHHHHHS-.EEETTEEEEEEE---HHHHHHHHHHHHHHHHHH.HTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 257 kvlnkdkilkavrekGr.vtlkGkPirltadlsaetlkarrewtdviqilk.ekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal 347 kv++k++il+avr+k + vt+kGkPirltad+s etl+arr+w++++ +lk + ++q r+lyP kls i +G i+ f dk++lr++ +P l T081234_1 1013 KVKTKERILRAVRQK-H*VTYKGKPIRLTADFSVETLQARRDWGPIFSLLK*N-NYQLRILYPVKLSTIYKGKIQSFSDKQMLREFAISKPPL 1103 *************98.9*******************************99777.79************************************* PP HHHHTT CS Transposase_22 348 krllke 353 + llk T081234_1 1104 QALLKG 1109 ****97 PP == domain 2 score: -0.1 bits; conditional E-value: 0.036 HHHHHTT---EEETTTEEEEES....SSSEEEESSHH....HHHHHHTT-HHHHHHHTTT-SSXS CS Transposase_22 303 qilkekkfqPrllyPaklsiii....dGeikvfidkt....klrdylstrPalkrllkeknerkd 359 q+lk ++f + l l + i Ge k+f dk + + y + + +l rl+k e+k+ T081234_1 1910 QTLKTQQFSEKKLSVGELELAIkkkmSGEEKYFLDKFvvlfMSHYYCTSKKTLLRLVKKIIEKKE 1974 566666665555555544444311227*********72222345688899999999998777765 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 3.7e-08 0.0003 1 71 [. 1267 1336 .. 1267 1359 .. 0.83 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 3.7e-08 Exo_endo_phos_2 1 lliisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehsls 71 ++i ++Y p++ + + +++ l++l++e +s ++ii+GDfN + ++ g +++++ +++ +L +le+ +l+ T081234_1 1267 ITILNLYAPNTG-APKFIKQLLTDLRNEIDS-NTIIVGDFNTPLTALGRSSRQKvNKETMDLNYTLEQMDLT 1336 68999***9999.888888999999999987.7****************88887889999999999998888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 7677.85 // Query: T081234_2 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-06 26.1 0.1 1e-05 24.9 0.1 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.1 6.3e-10 1e-05 2 19 .] 1793 1810 .. 1793 1810 .. 0.96 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 6.3e-10 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa +WM LE+IILSE++Q T081234_2 1793 FAVTWMRLETIILSEVTQ 1810 888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 8355.31 // Query: T081234_3 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 8740.94 // Query: T000167_1 [L=3099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 13639.56 // Query: T000167_2 [L=3098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.42s 00:00:01.85 Elapsed: 00:00:00.82 # Mc/sec: 10808.36 // Query: T000167_3 [L=3098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.40s 00:00:01.66 Elapsed: 00:00:00.77 # Mc/sec: 11510.20 // Query: T158794_1 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 9341.04 // Query: T158794_2 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.60 # Mc/sec: 10270.38 // Query: T158794_3 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.65 # Mc/sec: 9480.35 // Query: T324410_1 [L=26684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (26684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.87u 0.69s 00:00:07.56 Elapsed: 00:00:01.25 # Mc/sec: 61070.71 // Query: T324410_2 [L=26684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 14.7 0.0 0.031 13.8 0.0 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 1.9e-06 0.031 2 19 .] 16312 16329 .. 16311 16329 .. 0.93 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.9e-06 DUF1725 2 FagKWMELEnIILSEisQ 19 a++WM LE+I+ SE sQ T324410_2 16312 YAATWMNLEDIMESETSQ 16329 69*************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (26684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 6.46u 0.57s 00:00:07.03 Elapsed: 00:00:01.12 # Mc/sec: 67556.10 // Query: T324410_3 [L=26684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (26684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.49u 0.59s 00:00:07.08 Elapsed: 00:00:01.19 # Mc/sec: 64149.91 // Query: T294566_1 [L=4066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1445 (0.0886177); expected 326.1 (0.02) Passed bias filter: 675 (0.0413958); expected 326.1 (0.02) Passed Vit filter: 255 (0.0156384); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.94u 0.48s 00:00:04.42 Elapsed: 00:00:01.00 # Mc/sec: 11632.13 // Query: T294566_2 [L=4065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.44 10.6 9.4 1.1 9.3 9.4 1.7 1 DUF2956 Protein of unknown function (DUF2956) Domain annotation for each model (and alignments): >> DUF2956 Protein of unknown function (DUF2956) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 9.4 7e-05 1.1 40 97 .. 1460 1519 .. 1450 1521 .. 0.64 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 7e-05 DUF2956 40 kkqqkekaReadkarkkqlkkkek.eeeeeeeeeseeetevekak.llpwlLLvlsWlgf 97 +k+ ke++R+++k rkk+ kk++k e+++e+++e ++ ++++ + l+p++ + sW+g+ T294566_2 1460 RKEGKERERDRQKGRKKERKKERKkERKKERKKERKKGKQFSFFQiLIPLIFFLSSWIGW 1519 56778888888888888884444403444444444455555554415789999999*997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1136 (0.0696676); expected 326.1 (0.02) Passed bias filter: 525 (0.0321967); expected 326.1 (0.02) Passed Vit filter: 160 (0.00981234); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.12u 0.50s 00:00:03.62 Elapsed: 00:00:00.99 # Mc/sec: 11746.74 // Query: T294566_3 [L=4065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.64 9.3 1.4 1 8.7 1.4 1.2 1 DUF4366 Domain of unknown function (DUF4366) Domain annotation for each model (and alignments): >> DUF4366 Domain of unknown function (DUF4366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 1.4 6.2e-05 1 127 183 .. 1443 1501 .. 1437 1533 .. 0.49 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 6.2e-05 DUF4366 127 evcsctekceagavn.....aanmsectgkete..peaeptaepksseeeekekkkekgasgll 183 +++ c++k + g++ +++ et +e +++ +++ ++e +ke kke +++++l T294566_3 1443 QEKICQKKKKKGRRRkegrkG-----KKERETDrkEERKKERKKERKKERKKERKKERKENNFL 1501 55669*******999666431.....33333331111222222223334444444433333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1169 (0.0716914); expected 326.1 (0.02) Passed bias filter: 565 (0.0346498); expected 326.1 (0.02) Passed Vit filter: 161 (0.00987367); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.16u 0.51s 00:00:03.67 Elapsed: 00:00:00.96 # Mc/sec: 12113.83 // Query: T322331_1 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 9047.91 // Query: T322331_2 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 9047.91 // Query: T322331_3 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.62 # Mc/sec: 9777.58 // Query: T049204_1 [L=6214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.45s 00:00:02.40 Elapsed: 00:00:00.81 # Mc/sec: 21947.16 // Query: T049204_2 [L=6213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.41s 00:00:02.36 Elapsed: 00:00:00.84 # Mc/sec: 21159.92 // Query: T049204_3 [L=6213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.43s 00:00:02.40 Elapsed: 00:00:00.85 # Mc/sec: 20910.98 // Query: T354185_1 [L=1498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 7142.54 // Query: T354185_2 [L=1498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 6493.22 // Query: T354185_3 [L=1498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 6593.11 // Query: T187876_1 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-72 244.2 10.1 1.7e-46 158.6 0.2 3.3 3 Transposase_22 L1 transposable element 1.5e-06 27.5 0.7 3.3e-06 26.5 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.0 4.0 7.8e-20 6.4e-16 1 79 [. 1350 1424 .. 1350 1448 .. 0.89 2 ! 29.4 0.0 4.1e-11 3.3e-07 171 205 .. 1486 1520 .. 1481 1533 .. 0.89 3 ! 158.6 0.2 2.1e-50 1.7e-46 278 368 .] 1605 1697 .. 1598 1697 .. 0.99 Alignments for each domain: == domain 1 score: 58.0 bits; conditional E-value: 7.8e-20 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee 79 +Gkk+ rk++nsk++++s+P+ke+sssPa +++ ++df+elr+e++ + ++y+el+e+i++++ke++ ++k+ + T187876_1 1350 MGKKQ---SRKTGNSKTQSASPPPKERSSSPAM--AQSWTENDFDELREEGF-R*SNYSELQEEIRTNGKEVKsFEKKIRR 1424 79999...9************************..9***************9.7779****************99998765 PP == domain 2 score: 29.4 bits; conditional E-value: 4.1e-11 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--H CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeql 205 k++k++ slq+ +d+vkrPnl liGv+es++ T187876_1 1486 KKIKRNGPSLQETWDYVKRPNLHLIGVPESDVTGR 1520 899****************************9765 PP == domain 3 score: 158.6 bits; conditional E-value: 2.1e-50 TEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 278 GkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 GkPirltadlsaetl+arrew+++++ilkek++qPr++yPakls+i++Geik+f d+++lrd+++trPalk+llke ++er++ryq+l++++ T187876_1 1605 GKPIRLTADLSAETLQARREWGPIFNILKEKNVQPRISYPAKLSFISEGEIKYFTDRQMLRDFVTTRPALKELLKEalNMERNNRYQPLQKHA 1697 9*****************************************************************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.7 4.1e-10 3.3e-06 1 16 [. 2963 2978 .. 2963 2980 .. 0.94 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 4.1e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T187876_1 2963 SFVGTWMKLETIILSK 2978 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.45u 0.39s 00:00:01.84 Elapsed: 00:00:00.84 # Mc/sec: 11899.69 // Query: T187876_2 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-09 37.8 0.0 2.8e-09 37.1 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.7e-07 31.0 1.6 3.2e-07 30.1 1.6 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 6.6 7.1 10.2 1.6 9.1 0.2 2.8 2 FadA Adhesion protein FadA Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 0.0 5.1e-13 2.8e-09 1 113 [] 1729 1948 .. 1729 1948 .. 0.85 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 5.1e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l + + + + T187876_2 1729 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQEIHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILASEKTDFKptkikrdkeghyimv 1818 699****....7778899*******************99998877777768866677888899999**99999999666788899999***999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T187876_2 1819 kgsiqqgeqtilniyapntgaprfikqvlsdlqkdldsqTIIMGDFNTplstldrstrqkvnkdtqelnsalhqtdridiyrtlhpksteytff 1912 9999999*****************************************9999999999999999999999999999888888888888888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T187876_2 1913 svphhtysKIDHIVGSKALLSKCKRTEIITNClSDH 1948 888888888899999985544444444433337888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 1.6 5.8e-11 3.2e-07 2 118 .. 1828 1951 .. 1827 1952 .. 0.77 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 5.8e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ + + ++k++ tf s + T187876_2 1828 TILNIYAPNTG-APRFIKQVLSDLQKDLDS-QTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQTDRIDIyrtLHPKSTeYTFFSVPHh 1917 58899*99999.666666666666667765.79**************9888879*******9999998765334443334334666544444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T187876_2 1918 tYSKIDHIVGSKALLSKckRTEIITNCLSDHSAI 1951 58***************98666779******998 PP >> FadA Adhesion protein FadA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.2 0.00029 1.6 79 115 .. 1394 1430 .. 1392 1441 .. 0.87 2 ? -0.6 5.5 0.29 1.6e+03 24 121 .. 2030 2132 .. 2012 2136 .. 0.58 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00029 FadA 79 kieaeskvkfykkeYkdvvkqykallkkldkeiaenq 115 k+ +++ + +y+ ++++++k++kal kkld+ i++ + T187876_2 1394 KASDDQTTPSYRRKFEPMAKKLKALKKKLDEWITRIT 1430 566788999**********************998755 PP == domain 2 score: -0.6 bits; conditional E-value: 0.29 FadA 24 t..asleseldaleaqleeLvkkeear.ykkek.akaeaaaee.lakkselkakleeklakieaeskvkfykkeYkdvvkqykallkkldkeiaenqk 116 +l+s+l++le+q + k + k + ++ e ++++ l+k +e + l ek++ki+ + kk+ k+ + +k+ ++ + +e q+ T187876_2 2030 SkiDTLTSQLKELEKQEQTHSKASRRQeITKIRaELKEIETQKiLQKINESRSWLFEKINKIDRPLARLIKKKREKNCIDAIKNDKGDITTDPTEIQT 2127 13344555555555555544433222234443314456666653567788888888888888876666666666777777777777777777777777 PP FadA 117 ivdnf 121 ++ ++ T187876_2 2128 TIREY 2132 76666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 770 (0.0472219); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.60u 0.45s 00:00:02.05 Elapsed: 00:00:00.80 # Mc/sec: 12494.68 // Query: T187876_3 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-48 162.7 1.2 1.3e-47 162.1 1.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 5.4e-38 130.7 3.2 8.4e-38 130.0 3.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.1 1.2 1.6e-51 1.3e-47 1 210 [. 2235 2463 .. 2235 2490 .. 0.95 Alignments for each domain: == domain 1 score: 162.1 bits; conditional E-value: 1.6e-51 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++ k+lnk++a+ ++++++kl+ ++q+gf pg + + ++ ++++++++ k k+++++++D +k Fd+++ ++ l T187876_3 2235 IPKPGrdttkKENFRPISLMNTEAKILNKILANLIQQHIKKLIYHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKTFDKIQQPFML 2332 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++ ++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l re+r++ ++v+l+++aDD++++ ++ T187876_3 2333 KTPNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKRGTRQGCPLSPLLFNIVLEVLAREIRQEKeikgiqlgkEEVKLSLFADDMIVYLENpI 2430 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlfsg 210 ++q+ll+ ++++ k sg+kin +K++++l+++ T187876_3 2431 VSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 2463 77***************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.0 3.2 1e-41 8.4e-38 201 280 .. 1517 1596 .. 1516 1598 .. 0.98 Alignments for each domain: == domain 1 score: 130.0 bits; conditional E-value: 1e-41 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP 280 + e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvt kG P T187876_3 1517 DGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRMPQRKSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGSP 1596 6799**************************************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.78 # Mc/sec: 12815.05 // Query: T351126_1 [L=1967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.64 # Mc/sec: 8792.58 // Query: T351126_2 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.2 0.1 0.082 12.7 0.1 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 5e-06 0.082 15 43 .. 1049 1081 .. 1045 1088 .. 0.80 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 5e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351126_2 1049 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1081 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 9697.23 // Query: T351126_3 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-21 74.0 7.5 1.6e-20 72.6 4.6 2.6 2 Transposase_1 Transposase (partial DDE domain) 0.003 17.2 0.4 0.0053 16.4 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.062 13.4 0.0 0.13 12.3 0.0 1.5 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.059 3.2e+02 25 38 .. 859 872 .. 855 874 .. 0.80 2 ! 72.6 4.6 2.9e-24 1.6e-20 14 79 .. 1044 1113 .. 1023 1114 .. 0.86 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.059 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351126_3 859 EKLSKNAMLTIVWS 872 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 2.9e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351126_3 1044 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1113 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 9.7e-07 0.0053 55 143 .. 1084 1177 .. 1018 1179 .. 0.75 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9.7e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351126_3 1084 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1177 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 2.5e-05 0.13 5 23 .. 1891 1909 .. 1888 1915 .. 0.86 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.5e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351126_3 1891 NLVCQVFPREYLANHNCGR 1909 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.72 # Mc/sec: 7811.66 // Query: T060409_1 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-12 46.6 7.0 3e-12 45.9 7.0 1.3 1 Thymosin Thymosin beta-4 family Domain annotation for each model (and alignments): >> Thymosin Thymosin beta-4 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 7.0 1.8e-16 3e-12 12 39 .] 165 192 .. 163 192 .. 0.97 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 1.8e-16 Thymosin 12 dkskLKkteTqEKnvLPtkEdieqEKqe 39 dkskLKkte qEKn+LP+kE+ieqEKq+ T060409_1 165 DKSKLKKTEVQEKNPLPSKEMIEQEKQA 192 9*************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 2838.12 // Query: T060409_2 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.60 # Mc/sec: 2980.03 // Query: T060409_3 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 3131.86 // Query: T227039_1 [L=10159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-15 55.0 0.2 1.2e-14 54.2 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.2 0.2 7.7e-19 1.2e-14 63 187 .. 2294 2428 .. 2270 2437 .. 0.87 Alignments for each domain: == domain 1 score: 54.2 bits; conditional E-value: 7.7e-19 CCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--.ST-TTHHHHHHHHHHHHHTT-T.... CS RVT_1 63 kkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglp.qGsvlSPllfnlfmnellrelrkra. 158 + k k++ +++ D +k F+++++++ +++l++++++++ +n+ik++++ +++s+ +n+e+ ++++ g qG+ +SPllfn++++ l + +r++ T227039_1 2294 RMKDKNHKIISTDAEKSFEKIQFHFMIKTLKQLGIERTHLNIIKAIYNRPTASIILNEEKVKTFPLRSG-T*QGCLISPLLFNIVLEVLAKAIRQEKg 2390 456788999***********************************************9998666666666.799**********************99* PP ...........TEEECTTEEEEEESSHHH.HHHHHHHH CS RVT_1 159 ........kgvtllrYaDDililskskee.lqelleav 187 ++v+l ++ DD++++ +++++ ++ le + T227039_1 2391 iksiqigkEEVKLFLFTDDMILYLEEPKDtTKKTLELI 2428 **************************777555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 971 (0.0595486); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.40u 0.59s 00:00:03.99 Elapsed: 00:00:00.98 # Mc/sec: 29656.30 // Query: T227039_2 [L=10159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 951 (0.0583221); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.23u 0.58s 00:00:03.81 Elapsed: 00:00:01.02 # Mc/sec: 28493.31 // Query: T227039_3 [L=10158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-25 88.7 4.6 3.1e-20 72.2 2.3 2.2 2 Transposase_22 L1 transposable element 2e-06 27.3 0.3 2e-06 27.3 0.3 1.9 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.2 2.3 3.9e-24 3.1e-20 217 310 .. 1133 1224 .. 1126 1229 .. 0.90 2 ! 16.4 0.0 3.5e-07 0.0028 204 237 .. 1309 1342 .. 1298 1353 .. 0.86 Alignments for each domain: == domain 1 score: 72.2 bits; conditional E-value: 3.9e-24 HHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHHS-EEETTEEEE.EEE---HHHHHHHHHHHHHHHHHHH CS Transposase_22 217 eenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrekGrvtlkGkPir.ltadlsaetlkarrewtdviqilke 307 +enf nl k++n+++qe yrtP r++ k ++srh+i+++ k++il +rek ++t+ + l+ad+s etl+arrew dv++ lk T227039_3 1133 NENFLNLDKDINIQVQESYRTPSRFNPKTSTSRHLIIKL---P*DKERILEVAREKKQITYN-RATI*LAADFSVETLQARREWHDVFKGLKK 1221 7************************************75...4559***************7.5666779**********************9 PP TT- CS Transposase_22 308 kkf 310 kk T227039_3 1222 KKK 1224 985 PP == domain 2 score: 16.4 bits; conditional E-value: 3.5e-07 -HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEE CS Transposase_22 204 qlkklenilnkiieenfPnlkkeanviiqeiyrt 237 q ++ +++ki nfPnl+ke+n+++qe yrt T227039_3 1309 QRNRGRSLFKKITTKNFPNLEKEINIQVQEGYRT 1342 56666789*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.3 2.5e-10 2e-06 8 62 .. 2233 2292 .. 2232 2299 .. 0.85 2 ? -1.4 0.3 0.15 1.2e+03 188 213 .. 2427 2453 .. 2419 2459 .. 0.76 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 2.5e-10 -EEE......-THHHHCTB--.........-------HHHH..................H CS RVT_1 8 syRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav.....eellkal 62 +yR isl+++d k+ln ++a+r +++++k++ ++q+gf p+ + + ++ ++l+ ++ T227039_3 2233 NYRSISLMNIDAKILNTILANRVQQHIKKIIRYDQMGFIPKMQGWFNIhksiiTVLHCYQ 2292 8****************************************9999999876654455443 PP == domain 2 score: -1.4 bits; conditional E-value: 0.15 HHHHHHTT--BEGGG-EEE......ES CS RVT_1 188 eewlkesglkinpeKtklvlfsg.kse 213 ++ k +g+kin++K+ ++l+ + k++ T227039_3 2427 DKFSKVAGYKINKQKSVAFLYANsKQS 2453 5788899************97544333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 613 (0.0375935); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.06u 0.55s 00:00:03.61 Elapsed: 00:00:01.12 # Mc/sec: 25946.71 // Query: T317963_1 [L=5194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.42s 00:00:02.28 Elapsed: 00:00:00.80 # Mc/sec: 18573.94 // Query: T317963_2 [L=5194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.41s 00:00:02.12 Elapsed: 00:00:00.77 # Mc/sec: 19297.60 // Query: T317963_3 [L=5193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.37s 00:00:02.13 Elapsed: 00:00:00.79 # Mc/sec: 18805.43 // Query: T379585_1 [L=10833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.3 0.0 0.031 13.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 1.9e-06 0.031 138 181 .. 666 709 .. 659 709 .. 0.94 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.9e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f rl + r++t dp+ + + + + fi+qsa+di+ T379585_1 666 KNPAQFTARLAATLRHFTALDPKRSKGRLILNIHFITQSAPDIK 709 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.90u 0.56s 00:00:03.46 Elapsed: 00:00:01.00 # Mc/sec: 30991.37 // Query: T379585_2 [L=10833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-36 126.0 1.6 2.6e-34 118.6 1.8 2.2 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 1.9e-06 27.9 0.0 3.5e-06 27.1 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.015 15.4 0.0 0.022 14.8 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.9 0.0 0.0027 15 3 86 .. 1058 1115 .. 1056 1116 .. 0.78 2 ! 118.6 1.8 4.8e-38 2.6e-34 11 200 .. 10259 10459 .. 10256 10484 .. 0.90 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0027 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvple 86 K++ + y ++ d++++n+++ +++ +p+ + s + ++ ++++ lDlk aF+++pl+ T379585_2 1058 KPD-KPYKLV----QDLRLINQIVLP---------IHPVLPNPYTLLS------------SIPASTTHYSVLDLKHAFFTIPLH 1115 666.677775....589999999999.........8888888888822............245677****************97 PP == domain 2 score: 118.6 bits; conditional E-value: 4.8e-38 E......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 11 pisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 pisl+++d k+lnk++a + ++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l++l+++++++ T379585_2 10259 PISLMNIDAKILNKILAn*iQ---QHIKKLIHHDQVGFIPGMQGWFNI*ksiNVIQHINRTKDKNHTIISIDAEKAFDKIQQRFMLKTLNKLGIDE 10351 8**************964434...688888*********************99999999999999******************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHH CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelle 185 + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPll n++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ T379585_2 10352 TYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLLNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLQNpIVSAQNLLK 10447 **********************99*********************************99***************************5566999998 PP HHHHHHHHTT--BEG CS RVT_1 186 aveewlkesglkinp 200 ++++ l+i++ T379585_2 10448 LISNFS---SLRIQN 10459 888774...344444 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 0.0 6.5e-10 3.5e-06 7 100 .. 866 954 .. 861 955 .. 0.85 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 6.5e-10 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEE.EEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqska.ievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ ++gk + +l+ t +++ ++ + P + a+ ++ Gi g+ ++ ++ +l ++ f + s+l+++++pv+llGr +L+kl + L T379585_2 866 VTLTMEGKSVPFLINTESTHSTLPSFQGPVS----LASITVVGIDGQASKPLKTPqLWCQLRQHSFMH--SFLVISTCPVPLLGRHILTKLSASL 954 67788899***********************....************976666650444455555555..*********************9988 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.0 4e-06 0.022 39 118 .. 1458 1535 .. 1456 1536 .. 0.84 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 4e-06 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 a+++ +e+++ ++ +l ++ +f p + sDng++++s+ +++ + l i+ + p+ p + kvE + ++lk++ T379585_2 1458 AFPTGSEKATAVISSVLSDIIPQFSL--PTSIQSDNGRAFISQISQAVFQALSIQCNLYIPYGPPSSRKVEWTKGLLKTH 1535 67788895555555666666666666..*******************************************999999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.13u 0.49s 00:00:03.62 Elapsed: 00:00:00.90 # Mc/sec: 34434.86 // Query: T379585_3 [L=10833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.9 8.6 11.9 0.68 10.0 6.3 2.7 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 6.3 4.2e-05 0.68 2 16 .. 778 792 .. 777 793 .. 0.95 2 ? 0.6 0.3 0.038 6.2e+02 11 17 .. 809 815 .. 809 816 .. 0.93 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 4.2e-05 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +Cy+C++ GH+a++C T379585_3 778 ACYKCQKCGHQAKEC 792 7************** PP == domain 2 score: 0.6 bits; conditional E-value: 0.038 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T379585_3 809 HWKSDCP 815 ******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.03u 0.46s 00:00:03.49 Elapsed: 00:00:00.91 # Mc/sec: 34056.45 // Query: T196596_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.47 10.1 4.8 0.12 12.0 0.6 2.1 2 Ephrin_rec_like Putative ephrin-receptor like Domain annotation for each model (and alignments): >> Ephrin_rec_like Putative ephrin-receptor like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.6 7.6e-06 0.12 13 48 .] 76 110 .. 75 110 .. 0.95 2 ? 1.9 0.8 0.01 1.7e+02 9 24 .. 108 123 .. 104 146 .. 0.78 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.6e-06 Ephrin_rec_like 13 pCprgtYqneegqlsClaCPlgtttkkpgatsesdC 48 C+ g+Y + +g ls ++CP gt+ k pga ++ C T196596_1 76 TCRPGHYCPAQGLLS-IPCPMGTFRKAPGAARVEYC 110 7***********999.******************99 PP == domain 2 score: 1.9 bits; conditional E-value: 0.01 Ephrin_rec_like 9 etCipCprgtYqneeg 24 e C+pC g + ++g T196596_1 108 EYCQPCHLGAFCGKAG 123 56****9999876554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 1538.78 // Query: T196596_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 1562.45 // Query: T196596_3 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.53 # Mc/sec: 1916.22 // Query: T138128_1 [L=8520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1432 (0.0878204); expected 326.1 (0.02) Passed bias filter: 391 (0.0239789); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.25u 0.59s 00:00:05.84 Elapsed: 00:00:01.25 # Mc/sec: 19499.42 // Query: T138128_2 [L=8520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1334 (0.0818104); expected 326.1 (0.02) Passed bias filter: 404 (0.0247762); expected 326.1 (0.02) Passed Vit filter: 125 (0.00766589); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.05u 0.63s 00:00:05.68 Elapsed: 00:00:01.27 # Mc/sec: 19192.34 // Query: T138128_3 [L=8520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1220 (0.0748191); expected 326.1 (0.02) Passed bias filter: 280 (0.0171716); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.17u 0.58s 00:00:04.75 Elapsed: 00:00:01.26 # Mc/sec: 19344.66 // Query: T001510_1 [L=2801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.72 # Mc/sec: 11129.42 // Query: T001510_2 [L=2800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 11125.45 // Query: T001510_3 [L=2800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:00.80 # Mc/sec: 10012.91 // Query: T316471_1 [L=4404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.37s 00:00:02.00 Elapsed: 00:00:00.95 # Mc/sec: 13262.21 // Query: T316471_2 [L=4404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.37s 00:00:01.94 Elapsed: 00:00:00.77 # Mc/sec: 16362.46 // Query: T316471_3 [L=4403] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4403 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.41s 00:00:01.90 Elapsed: 00:00:00.79 # Mc/sec: 15944.60 // Query: T165122_1 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1136 (0.0696676); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.46s 00:00:02.48 Elapsed: 00:00:01.03 # Mc/sec: 1910.92 // Query: T165122_2 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.95 9.2 9.1 53 3.5 0.1 5.0 5 DUF1647 Protein of unknown function (DUF1647) 5.6 6.8 45.9 2.5 7.9 0.4 10.4 12 PELOTA_1 PELOTA RNA binding domain Domain annotation for each model (and alignments): >> DUF1647 Protein of unknown function (DUF1647) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.1 0.0065 53 73 121 .. 160 208 .. 139 211 .. 0.77 2 ? -0.7 0.0 0.13 1.1e+03 89 121 .. 260 292 .. 244 298 .. 0.80 3 ? 1.6 0.1 0.025 2.1e+02 81 121 .. 313 353 .. 284 357 .. 0.83 4 ? 2.1 0.1 0.017 1.4e+02 86 122 .. 391 427 .. 373 462 .. 0.62 5 ? 2.2 0.1 0.016 1.3e+02 80 121 .. 491 532 .. 463 535 .. 0.72 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.0065 DUF1647 73 lkeakksiksirkyypeqklilysLdlseeeieklkkdknlevrkFnts 121 +++ ++ ++ ++ + + il+ L+ ++ + +l++ k++ +r+ nt T165122_2 160 IRHLNTPKYILIRHLNTPQHILFRLNTPKHILIRLNTPKHILIRHLNTP 208 55555555566677788899*************************9986 PP == domain 2 score: -0.7 bits; conditional E-value: 0.13 DUF1647 89 eqklilysLdlseeeieklkkdknlevrkFnts 121 + k il L+ ++ + +l++ k++ +r+ nt T165122_2 260 TPKHILIRLNTPKHILIRLNTPKHILIRHLNTP 292 457889999999999999999999999999885 PP == domain 3 score: 1.6 bits; conditional E-value: 0.025 DUF1647 81 ksirkyypeqklilysLdlseeeieklkkdknlevrkFnts 121 +++ ++ + k il L+ ++ + +l++ k++ +r+ nt T165122_2 313 HILIRHLNTPKHILIRLNTPKHILIRLNTPKHILIRHLNTP 353 56678889999**************************9986 PP == domain 4 score: 2.1 bits; conditional E-value: 0.017 DUF1647 86 yypeqklilysLdlseeeieklkkdknlevrkFntsk 122 + + k il L+ ++ + +l++ k++ +r+ nt k T165122_2 391 HLNTPKHILIRLNTPKHILIRLNTPKHILIRHLNTPK 427 4555555666666666666666666666666655533 PP == domain 5 score: 2.2 bits; conditional E-value: 0.016 DUF1647 80 iksirkyypeqklilysLdlseeeieklkkdknlevrkFnts 121 +++ ++ + k il L+ ++ + +l++ k++ +r+ nt T165122_2 491 KHILIRHLNTPKHILIRLNTPKHILIRLNTPKHILIRHLNTP 532 445678888899999999999999999999999999999985 PP >> PELOTA_1 PELOTA RNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.1 0.0048 39 34 63 .. 151 180 .. 145 189 .. 0.84 2 ? 0.8 0.1 0.051 4.2e+02 40 64 .. 189 212 .. 179 219 .. 0.56 3 ? 5.9 0.6 0.0013 11 37 69 .. 217 249 .. 210 258 .. 0.81 4 ? 0.6 0.1 0.057 4.7e+02 38 64 .. 271 296 .. 254 299 .. 0.65 5 ? 4.1 0.3 0.0047 38 36 66 .. 298 328 .. 291 334 .. 0.84 6 ? 1.1 0.3 0.04 3.2e+02 37 57 .. 341 360 .. 331 376 .. 0.62 7 ? 0.8 0.3 0.049 4e+02 38 63 .. 374 398 .. 359 404 .. 0.55 8 ? 1.0 0.9 0.043 3.5e+02 38 55 .. 384 401 .. 373 433 .. 0.56 9 ? -0.4 0.1 0.12 9.8e+02 37 53 .. 414 430 .. 406 446 .. 0.69 10 ? 7.9 0.4 0.00031 2.5 37 68 .. 446 477 .. 438 487 .. 0.87 11 ? 1.0 0.2 0.044 3.6e+02 37 55 .. 489 507 .. 478 518 .. 0.60 12 ? 5.9 0.5 0.0013 10 38 69 .. 521 552 .. 510 564 .. 0.57 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0048 PELOTA_1 34 LRRvPekvlvrdeeepdlahlllLakekgv 63 L +P+++l+r+ ++p+ ++++L +++ T165122_2 151 LVNTPKHILIRHLNTPKYILIRHLNTPQHI 180 55689*****************99887766 PP == domain 2 score: 0.8 bits; conditional E-value: 0.051 PELOTA_1 40 kvlvrdeeepdlahlllLakekgvp 64 ++l+r + +p++ ++++L k++ T165122_2 189 HILIRLN-TPKHILIRHLNTPKHIL 212 5555433.44444555555544443 PP == domain 3 score: 5.9 bits; conditional E-value: 0.0013 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevp 69 +P+++l+r ++p+++++++L k++ +++ + T165122_2 217 TPKHILIRLLNTPKHTLIRHLNTPKHILIRHLN 249 699999999999999999999999999887654 PP == domain 4 score: 0.6 bits; conditional E-value: 0.057 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgvp 64 P+++l+r + +p++ ++++L k++ T165122_2 271 PKHILIRLN-TPKHILIRHLNTPKHIL 296 666666643.56666666666666554 PP == domain 5 score: 4.1 bits; conditional E-value: 0.0047 PELOTA_1 36 RvPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r ++p++ ++++L k++ ++ T165122_2 298 NTPKHILIRLLNTPKHILIRHLNTPKHILIR 328 5799999999999999999999999988765 PP == domain 6 score: 1.1 bits; conditional E-value: 0.04 PELOTA_1 37 vPekvlvrdeeepdlahlllL 57 +P+++l+r+ ++p++ +++ L T165122_2 341 TPKHILIRHLNTPKHILIR-L 360 5777777777776654443.3 PP == domain 7 score: 0.8 bits; conditional E-value: 0.049 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgv 63 P+++l+r + +p++ ++++L k++ T165122_2 374 PKHILIRLN-TPKHILIRHLNTPKHI 398 444444432.3444444444444443 PP == domain 8 score: 1.0 bits; conditional E-value: 0.043 PELOTA_1 38 Pekvlvrdeeepdlahll 55 P+++l+r+ ++p++ +++ T165122_2 384 PKHILIRHLNTPKHILIR 401 555555555554433332 PP == domain 9 score: -0.4 bits; conditional E-value: 0.12 PELOTA_1 37 vPekvlvrdeeepdlah 53 +P+++l+r+ ++p++ + T165122_2 414 TPKHILIRHLNTPKHIL 430 68999999988887543 PP == domain 10 score: 7.9 bits; conditional E-value: 0.00031 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveev 68 +P+++l+r+ ++p+++++++L k++ + + T165122_2 446 TPKHILIRHLNTPKHTLIRHLNTPKHILISHL 477 79**********************99988776 PP == domain 11 score: 1.0 bits; conditional E-value: 0.044 PELOTA_1 37 vPekvlvrdeeepdlahll 55 +P+++l+r+ ++p++ +++ T165122_2 489 TPKHILIRHLNTPKHILIR 507 4667777776666654443 PP == domain 12 score: 5.9 bits; conditional E-value: 0.0013 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgvpveevp 69 P+++l+r+ ++p++ +++lL k++ +++ + T165122_2 521 PKHILIRHLNTPKHILIRLLNTPKHTLIRHLN 552 55555555555555555555555554444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.81 # Mc/sec: 2429.94 // Query: T165122_3 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 292 (0.0179075); expected 326.1 (0.02) Passed Vit filter: 224 (0.0137373); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.99u 0.51s 00:00:03.50 Elapsed: 00:00:01.03 # Mc/sec: 1910.92 // Query: T148953_1 [L=1099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 5154.18 // Query: T148953_2 [L=1099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 5420.78 // Query: T148953_3 [L=1099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 4763.72 // Query: T005454_1 [L=1361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.74 # Mc/sec: 5261.61 // Query: T005454_2 [L=1361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 5990.14 // Query: T005454_3 [L=1360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 6079.26 // Query: T092247_1 [L=1249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 620 (0.0380228); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 5857.67 // Query: T092247_2 [L=1249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 5857.67 // Query: T092247_3 [L=1248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 586 (0.0359377); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 5758.57 // Query: T094360_1 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.69 # Mc/sec: 4780.49 // Query: T094360_2 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 6343.34 // Query: T094360_3 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 5890.24 // Query: T369329_1 [L=3796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.36s 00:00:01.79 Elapsed: 00:00:00.69 # Mc/sec: 15738.71 // Query: T369329_2 [L=3796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.37s 00:00:01.77 Elapsed: 00:00:00.65 # Mc/sec: 16707.25 // Query: T369329_3 [L=3795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.77 # Mc/sec: 14099.81 // Query: T076802_1 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 7042.41 // Query: T076802_2 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-18 65.1 0.0 7.8e-18 64.0 0.0 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.0 0.0 4.8e-22 7.8e-18 17 67 .. 1373 1423 .. 1364 1423 .. 0.94 Alignments for each domain: == domain 1 score: 64.0 bits; conditional E-value: 4.8e-22 Transposase_1 17 tpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr 67 + k ++k++l kkvm+t+wWsa++li+y+fl+pgeti s++Yaqq+++++ T076802_2 1373 SSKALSKAKLAPKKVMVTFWWSAASLIHYSFLNPGETIPSDKYAQQINETH 1423 568899******************************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.62 # Mc/sec: 6815.24 // Query: T076802_3 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 6209.68 // Query: T213923_1 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 945 (0.0579541); expected 326.1 (0.02) Passed bias filter: 561 (0.0344045); expected 326.1 (0.02) Passed Vit filter: 122 (0.00748191); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 2773.76 // Query: T213923_2 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 670 (0.0410892); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.70 # Mc/sec: 2734.14 // Query: T213923_3 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.71 # Mc/sec: 2691.60 // Query: T171326_1 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-99 332.0 3.5 8.8e-99 331.6 3.5 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 331.6 3.5 5.4e-103 8.8e-99 37 561 .] 328 862 .. 296 862 .. 0.84 Alignments for each domain: == domain 1 score: 331.6 bits; conditional E-value: 5.4e-103 ....XXXXXX.XXX.XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX. CS TLV_coat 37 qpdlCdlaggsqsswslpdqetksvksvaedlsakltaqslkpeCkkkpkr.tasaneklyvcPgearkraerrhcGglsslYeaewqCettgktywtaa 135 +dlC l + + + ++++ + + dl a ++ + C ++ + +n ++y+cPg++ + +c + ++++ w C t+ + + ++ T171326_1 328 AVDLCVLFPEPART-HEEQHNLPVIGAGSVDLAAGFGHSGSQTGCGSSKGAeKGLQNVDFYLCPGNHPDA----SCRDTYQFFCPDWTCVTLATYSGGST 422 56777777754444.444455555555677777777777789999877766588999**********886....455569***********987666665 PP ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXX.XXXX CS TLV_coat 136 sswdlitlkknktssktqevtqegscnkLilaftkkGkka..ktllwglrlyvsGydPlltfsirlkvkkl..............eevlkdqkpp.sqph 218 s l++ + + + ++cn+L++++ + ++ wglrly+ G d +++f+i+ k+ +++++++ + + T171326_1 423 RSSTLSISRVPH-----PKLCTRKNCNPLTITVHDPNAAQwyYGMSWGLRLYIPGFDVGTMFTIQKKILVSwsspkpigpltdlgDPIFQKHPDKvDLTV 517 555544444444.....46677889******999887766779********************9866665599*****9999999999887744404444 PP XXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX CS TLV_coat 219 plalplaretspekegtddrlldllqgayltLnatnpsltedCwlClesgppyyeaiavngsvsnktsapacslspqlkltlsevtgqgllig.....kv 313 pl +r +++++++++ l+++l g++ +Ln+t+p+l++dCwlCl+++ppyy+++ v+ ++ +c + p +lt+ +v+g+ ++ T171326_1 518 PLPFLVPR-PQLQQQHLQPSLMSILGGVHHLLNLTQPKLAQDCWLCLKAKPPYYVGLGVEATLKRGPL--SCHTRP-RALTIGDVSGNASCLIstgynLS 613 55444444.7799*********************************************8887766554..376666.57889999998766554777544 PP XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXX...XX.XXXXXXXXXX CS TLV_coat 314 Pkthqalcnkte.ktskgseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge...yiyaidepatRvkRepval.tlallLgGLg 408 + qa cn+ ++ + s + apn t+ ac+ glt c++ + + lCvl+++lP+++++sg+ + a e ++R a+ l++lL+GL+ T171326_1 614 ASPFQATCNQSLlTSISTSVSYQAPNNTWLACTSGLTRCINGTEPGP--LLCVLVHVLPQVYVYSGPegrQLIAPPELHPRLHQ---AVpLLVPLLAGLS 708 6677899**99977778888999*****************9987765..58**************9978888888888888888...5524799****** PP XXXXXXXXXXXXXX.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHH CS TLV_coat 409 iaagvgtGttglvs.tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqr 507 ia+ + Gt++lv+ + + +L++++++D ++l+++I l+ ++ slaevvlQN R LDlLfl +GGlCaAL E CCFya++sg+ + ++k +e+l++ T171326_1 709 IAGSAAIGTAALVQgETGLISLSQQVDADFSNLQSAIDILHSQVESLAEVVLQNCRCLDLLFLSQGGLCAALGESCCFYANQSGVIKGTVKKVRENLDRH 808 ************99678899******************************************************************************** PP HHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 508 qrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 q++ e+n w++++++ pwlttl+ + gpLl+lLL L++GPciln +++ik T171326_1 809 QQERENNIPWYQSMFNWNPWLTTLITGLAGPLLILLLSLIFGPCILNSFLNFIK 862 ****************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 8259.09 // Query: T171326_2 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 8380.55 // Query: T171326_3 [L=1991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 15.1 0.0 0.029 14.4 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 1.8e-06 0.029 8 73 .. 1166 1232 .. 1164 1240 .. 0.84 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.8e-06 EEEEEECTTTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHH CS RNase_H 8 tDGsclgnsgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYv 73 DGs+ +g++ g+ v++ke+ + +l++ ++++ EL A +aLk l ++e+ +iyt Sk + T171326_3 1166 IDGSSWVIEGKRHNGYsVTDKETlVEAELGKLPNNWSAQTWELFASSQALKYL-QNEEGVIYTNSKLI 1232 59****9*********7778886433555778899****************86.667889****9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.70 # Mc/sec: 8137.02 // Query: T053009_1 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 634 (0.0388814); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 7922.65 // Query: T053009_2 [L=1716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 695 (0.0426223); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 6914.34 // Query: T053009_3 [L=1716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 677 (0.0415185); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.67 # Mc/sec: 7327.14 // Query: T136065_1 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 638 (0.0391267); expected 326.1 (0.02) Passed bias filter: 307 (0.0188274); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:00.74 # Mc/sec: 8485.84 // Query: T136065_2 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 8.4 3.8 1.8 7.9 3.8 1.1 1 DUF4349 Domain of unknown function (DUF4349) Domain annotation for each model (and alignments): >> DUF4349 Domain of unknown function (DUF4349) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 3.8 0.00011 1.8 5 43 .. 1967 2005 .. 1956 2048 .. 0.67 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00011 DUF4349 5 ksssssaaasapaeaaaaaaaaaaaaaaeapaaaasesa 43 k+++++a++ a+a+aaaaaaaaaaaaaa a+aa+a+++a T136065_2 1967 KKGEEEAEKEATAAAAAAAAAAAAAAAAAAAAATAAPKA 2005 555666666666666666666666666555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 8970.75 // Query: T136065_3 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00044 19.2 10.1 0.00065 18.6 10.1 1.1 1 DUF2722 Protein of unknown function (DUF2722) ------ inclusion threshold ------ 0.039 13.8 13.4 0.059 13.2 13.4 1.1 1 TFIIA Transcription factor IIA, alpha/beta subunit Domain annotation for each model (and alignments): >> DUF2722 Protein of unknown function (DUF2722) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 10.1 8e-08 0.00065 17 47 .. 1972 2035 .. 1966 2098 .. 0.57 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 8e-08 DUF2722 17 eqvskqqqkkesskqgsqqeqksqqqqqsq.................................t 47 ++ +kqqq++++++q++qq+q++qqqqq+q T136065_3 1972 KPKKKQQQQQQQQQQQQQQQQQQQQQQQQQhpklfltpwlkartlpgagnlhscqsnlraqtrM 2035 2233333333333333333333333444434557676666666666666555555555555550 PP >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 13.4 7.2e-06 0.059 189 228 .. 1973 2003 .. 1938 2073 .. 0.58 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 7.2e-06 TFIIA 189 aepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqa 228 ++++qq qqqqqqqqqqqq+qqqq ++qq+q++ T136065_3 1973 PKKKQQ-------QQQQQQQQQQQQQQQQQ--QQQQQQHP 2003 111111.......11111111111111111..11111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2179 (0.133632); expected 326.1 (0.02) Passed bias filter: 727 (0.0445848); expected 326.1 (0.02) Passed Vit filter: 180 (0.0110389); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.07u 0.50s 00:00:02.57 Elapsed: 00:00:00.84 # Mc/sec: 7475.62 // Query: T165802_1 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 5075.81 // Query: T165802_2 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 5234.42 // Query: T165802_3 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 5153.90 // Query: T170768_1 [L=2214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 11112.07 // Query: T170768_2 [L=2214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.67 # Mc/sec: 9453.55 // Query: T170768_3 [L=2213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.67 # Mc/sec: 9449.28 // Query: T051498_1 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.69 # Mc/sec: 2595.48 // Query: T051498_2 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 11.7 1.7 87 2.9 0.1 3.7 3 Shugoshin_C Shugoshin C terminus Domain annotation for each model (and alignments): >> Shugoshin_C Shugoshin C terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.0 0.0054 89 12 20 .. 148 156 .. 142 156 .. 0.84 2 ? 2.9 0.1 0.0053 87 12 20 .. 193 201 .. 182 201 .. 0.87 3 ? 2.9 0.0 0.0054 89 12 20 .. 227 235 .. 221 235 .. 0.84 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.0054 Shugoshin_C 12 sYKEPsLns 20 s+++PsL+s T051498_2 148 SLALPSLRS 156 99*****97 PP == domain 2 score: 2.9 bits; conditional E-value: 0.0053 Shugoshin_C 12 sYKEPsLns 20 s+++PsL+s T051498_2 193 SLALPSLRS 201 99*****97 PP == domain 3 score: 2.9 bits; conditional E-value: 0.0054 Shugoshin_C 12 sYKEPsLns 20 s+++PsL+s T051498_2 227 SLALPSLRS 235 99*****97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 2798.25 // Query: T051498_3 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.6 6.2 88 2.8 0.0 4.3 4 DUF3665 Branched-chain amino acid aminotransferase Domain annotation for each model (and alignments): >> DUF3665 Branched-chain amino acid aminotransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.0054 88 11 17 .. 156 162 .. 155 163 .. 0.91 2 ? 2.8 0.0 0.0054 88 11 17 .. 201 207 .. 200 208 .. 0.91 3 ? 2.8 0.0 0.0054 88 11 17 .. 235 241 .. 234 242 .. 0.91 4 ? -1.3 0.3 0.1 1.7e+03 11 14 .. 269 272 .. 268 273 .. 0.91 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.0054 DUF3665 11 PTSPErL 17 PTSP r+ T051498_3 156 PTSPQRR 162 ****998 PP == domain 2 score: 2.8 bits; conditional E-value: 0.0054 DUF3665 11 PTSPErL 17 PTSP r+ T051498_3 201 PTSPQRR 207 ****998 PP == domain 3 score: 2.8 bits; conditional E-value: 0.0054 DUF3665 11 PTSPErL 17 PTSP r+ T051498_3 235 PTSPQRR 241 ****998 PP == domain 4 score: -1.3 bits; conditional E-value: 0.1 DUF3665 11 PTSP 14 PTSP T051498_3 269 PTSP 272 **** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 3576.04 // Query: T190484_1 [L=3766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.048 13.0 0.0 0.076 12.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 4.7e-06 0.076 137 182 .. 1016 1061 .. 1008 1068 .. 0.91 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 4.7e-06 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirk 182 ++pa f+ + r++t dp++ + + + + fi+qs++dir T190484_1 1016 YKNPAQFMACSAATLRHFTALDPKKSKGHLILKIHFITQSSPDIRT 1061 5689****************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 13812.67 // Query: T190484_2 [L=3765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00013 22.0 0.0 0.00031 20.8 0.0 1.6 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.0 1.9e-08 0.00031 7 89 .. 1217 1294 .. 1212 1294 .. 0.84 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 1.9e-08 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEE.ETTEEEEE..EEEESTTSSSEEE- CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievl.lieekfrgevsplilpelpvnllG 89 ++ ++gk++ +l+ t A+++ ++ + P + a+ ++ Gi g+ ++ ++ ++ + l + f+ s+l++p++pv+llG T190484_2 1217 VTFTVEGKPVPFLINTEATHSTLPSFQGPLS----LASITVVGIDGQASKPLKTPQLWCqLRQYSFK--HSFLVIPTCPVPLLG 1294 677899*************************....*************7777776444304444455..5************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.73 # Mc/sec: 14754.83 // Query: T190484_3 [L=3765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.44s 00:00:01.82 Elapsed: 00:00:00.83 # Mc/sec: 12977.14 // Query: T352640_1 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2258.55 // Query: T352640_2 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 489 (0.029989); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44 # Mc/sec: 2925.85 // Query: T352640_3 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 2384.03 // Query: T315742_1 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2750.80 // Query: T315742_2 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 2648.92 // Query: T315742_3 [L=499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 11.8 0.1 8.6 6.0 0.0 2.2 2 7kD_coat 7kD viral coat protein Domain annotation for each model (and alignments): >> 7kD_coat 7kD viral coat protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.00053 8.6 13 41 .. 360 392 .. 358 392 .. 0.80 2 ? 5.4 0.1 0.00079 13 23 43 .. 388 408 .. 386 414 .. 0.82 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00053 7kD_coat 13 llalylln....tsssegCvivITGesvtitgC 41 +++l+l++ ++ +gC++++ Ges+ +gC T315742_3 360 FYFLNLMQfmgeSTGGHGCLVRFVGESTGGHGC 392 566677777778999************977776 PP == domain 2 score: 5.4 bits; conditional E-value: 0.00079 7kD_coat 23 ssegCvivITGesvtitgCei 43 +gC++++ Ges+ +gC T315742_3 388 GGHGCLVRFMGESIGGRGCLA 408 5689**********9999954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2549.20 // Query: T117561_1 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 8684.97 // Query: T117561_2 [L=2033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 8812.22 // Query: T117561_3 [L=2033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.63 # Mc/sec: 9231.85 // Query: T316339_1 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.77 # Mc/sec: 9225.25 // Query: T316339_2 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.67 # Mc/sec: 10602.15 // Query: T316339_3 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.65 # Mc/sec: 10928.37 // Query: T356545_1 [L=634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.053 13.8 2.6 0.093 13.0 2.6 1.3 1 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 2.6 5.7e-06 0.093 22 79 .. 90 141 .. 29 150 .. 0.39 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 5.7e-06 RNA_pol_Rpc4 22 aaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklks 79 ++e + +ea+ ++++++eee+k +e++++++ ke+k+k+kk+++++++++ T356545_1 90 QEEREGEEAGGGGEKEREEEEEKKMVVEEEEKKK------KEEKEKEKKEQEEEEEEE 141 2222222222222222222222221111111111......111111112222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2026 (0.124249); expected 326.1 (0.02) Passed bias filter: 909 (0.0557464); expected 326.1 (0.02) Passed Vit filter: 288 (0.0176622); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.42s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 2628.65 // Query: T356545_2 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 3353.53 // Query: T356545_3 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2743.80 // Query: T164589_1 [L=4670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:00.71 # Mc/sec: 18817.01 // Query: T164589_2 [L=4670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.34s 00:00:01.88 Elapsed: 00:00:00.71 # Mc/sec: 18817.01 // Query: T164589_3 [L=4670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.38s 00:00:02.00 Elapsed: 00:00:00.77 # Mc/sec: 17350.75 // Query: T141524_1 [L=967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 4256.03 // Query: T141524_2 [L=967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 4128.99 // Query: T141524_3 [L=967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 716 (0.0439102); expected 326.1 (0.02) Passed bias filter: 394 (0.0241629); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 4009.31 // Query: T165275_1 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 2827.45 // Query: T165275_2 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 2570.41 // Query: T165275_3 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 3029.41 // Query: T193720_1 [L=117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-05 22.7 0.0 0.18 11.8 0.0 3.0 2 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.11 12.4 0.0 8.9 6.1 0.0 2.2 3 Lamprin Lamprin 7.8 6.7 10.2 6.4 7.0 0.7 3.9 3 DUF2924 Protein of unknown function (DUF2924) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.0 0.0017 9.4 43 70 .. 2 29 .. 1 36 [. 0.79 2 ! 11.8 0.0 3.4e-05 0.18 30 65 .. 69 104 .. 48 115 .. 0.50 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0017 Pentapeptide_4 43 lsdvdfaeadlkrasFsgcdlknvnfsg 70 ls ++++++++ +++ g ++++ ++g T193720_1 2 LSGMEWNGMEWNGMEWNGINTNGMAWNG 29 6778899999999999999999988876 PP == domain 2 score: 11.8 bits; conditional E-value: 3.4e-05 Pentapeptide_4 30 eanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 + + v+++ + + ++++++++ +++ g+++++ T193720_1 69 GMESTRVEWNGIEWNGMEWNGMEWNGINLIGMEWNG 104 333333333333333344444444444444444444 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.0 0.0016 8.9 40 70 .. 12 42 .. 2 46 .. 0.51 2 ? 3.3 0.0 0.012 65 42 74 .. 59 91 .. 49 102 .. 0.50 3 ? 3.1 0.0 0.014 76 42 68 .. 79 105 .. 64 112 .. 0.70 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0016 Lamprin 40 vgglgygglgygglgvaglgvaglgygglgy 70 g+ + g+ g+ + g+ ag+ gl + T193720_1 12 WNGMEWNGINTNGMAWNGMESAGIECNGLEW 42 3455555555555555555555555555554 PP == domain 2 score: 3.3 bits; conditional E-value: 0.012 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaa 74 g+ + g+ + g+ + + g+ + g+ + g T193720_1 59 GMEWNGIEFSGMESTRVEWNGIEWNGMEWNGME 91 455555555555544444444444444444433 PP == domain 3 score: 3.1 bits; conditional E-value: 0.014 Lamprin 42 glgygglgygglgvaglgvaglgyggl 68 g+ + g+ + g+ + g+ + g+ + g+ T193720_1 79 GIEWNGMEWNGMEWNGINLIGMEWNGM 105 566677777777777777777777666 PP >> DUF2924 Protein of unknown function (DUF2924) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.2 0.045 2.4e+02 124 134 .. 5 15 .. 1 25 [. 0.60 2 ? 1.8 0.3 0.048 2.6e+02 123 134 .. 59 70 .. 48 71 .. 0.80 3 ? 7.0 0.7 0.0012 6.4 98 131 .. 74 107 .. 60 114 .. 0.59 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.045 DUF2924 124 trwnGprFFGL 134 +wnG+ + G+ T193720_1 5 MEWNGMEWNGM 15 55555554443 PP == domain 2 score: 1.8 bits; conditional E-value: 0.048 DUF2924 123 GtrwnGprFFGL 134 G +wnG F G+ T193720_1 59 GMEWNGIEFSGM 70 788999888776 PP == domain 3 score: 7.0 bits; conditional E-value: 0.0012 DUF2924 98 tvledgfeyegrryksLsaiAreitGtrwnGprF 131 +v +g e++g +++ + ++ G +wnG+ + T193720_1 74 RVEWNGIEWNGMEWNGMEWNGINLIGMEWNGMEW 107 4555666666666666666666666666666543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44 # Mc/sec: 760.72 // Query: T193720_2 [L=116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0093 15.9 0.0 6.1 6.9 0.0 2.7 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.0 0.0006 9.7 46 75 .. 3 33 .. 3 34 .. 0.85 2 ! 6.9 0.0 0.00037 6.1 44 73 .. 46 76 .. 36 79 .. 0.68 3 ? -1.6 0.0 0.17 2.8e+03 48 56 .. 85 93 .. 81 112 .. 0.51 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0006 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkda 75 v++++++++ +++ g++ + +++g +++++ T193720_2 3 VEWNGMEWNGMEWNGMESTRMEWHGmEWNQL 33 6899999999999999999999988788775 PP == domain 2 score: 6.9 bits; conditional E-value: 0.00037 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnfsg.klk 73 ++ + ++++ +r+++ g++l++v+++ +++ T193720_2 46 NEMERNGMESTRVEWNGMELSSVEWNQpEWN 76 4455567777788999999999999876666 PP == domain 3 score: -1.6 bits; conditional E-value: 0.17 Pentapeptide_4 48 faeadlkra 56 +++++++ + T193720_2 85 WNGMEWNGM 93 344444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.53 # Mc/sec: 626.14 // Query: T193720_3 [L=116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-07 28.8 0.1 0.015 15.3 0.1 3.5 3 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 2.2 8.5 7.7 0.6 10.3 2.0 2.8 2 DUF2924 Protein of unknown function (DUF2924) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.00058 4.8 48 75 .. 3 31 .. 2 32 .. 0.80 2 ! 15.3 0.1 1.8e-06 0.015 36 73 .. 16 54 .. 11 61 .. 0.81 3 ! 7.5 0.0 0.0005 4.1 52 70 .. 77 95 .. 66 115 .. 0.53 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00058 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfsg.klkda 75 +++++++ +++ g+++++ +++g +++++ T193720_3 3 WNGMEWNGMEWNGMEWNQHEWNGmEWNGI 31 88899999999999999999987788776 PP == domain 2 score: 15.3 bits; conditional E-value: 1.8e-06 Pentapeptide_4 36 vnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klk 73 +++++ + + ++++++++r++++g+++++ +++g +++ T193720_3 16 MEWNQHEWNGMEWNGISWNRMQWTGMEWNGMKWNGmEWN 54 566666677789999999999999999999999876776 PP == domain 3 score: 7.5 bits; conditional E-value: 0.0005 Pentapeptide_4 52 dlkrasFsgcdlknvnfsg 70 +++r+++ g+++++ +++ T193720_3 77 EWNRMEWNGMEWNGMEWNQ 95 3333333333333333332 PP >> DUF2924 Protein of unknown function (DUF2924) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 2.0 7.4e-05 0.6 89 134 .. 7 51 .. 2 52 .. 0.82 2 ? 0.1 0.4 0.11 8.9e+02 129 129 .. 91 91 .. 70 107 .. 0.60 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 7.4e-05 DUF2924 89 ewkgrehevtvledgfeyegrryksLsaiAreitGtrwnGprFFGL 134 ew+g e + + + e++g +++ +s + tG +wnG+++ G+ T193720_3 7 EWNGMEWNG-MEWNQHEWNGMEWNGISWNRMQWTGMEWNGMKWNGM 51 566666654.345679**************************9887 PP == domain 2 score: 0.1 bits; conditional E-value: 0.11 DUF2924 129 p 129 + T193720_3 91 M 91 2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 582.20 // Query: T129253_1 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.79 # Mc/sec: 10900.12 // Query: T129253_2 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 11330.39 // Query: T129253_3 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.93 # Mc/sec: 9256.17 // Query: T300746_1 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-09 36.3 0.7 8.7e-09 35.2 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.6e-06 27.3 4.4 6e-06 26.1 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.7 1.1e-12 8.7e-09 2 62 .. 619 680 .. 618 683 .. 0.86 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 1.1e-12 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300746_1 619 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 680 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 4.4 7.3e-10 6e-06 10 82 .. 534 606 .. 521 613 .. 0.54 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 7.3e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300746_1 534 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 606 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 5552.82 // Query: T300746_2 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 5840.04 // Query: T300746_3 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.5 5.9 0.056 13.4 5.9 1.6 1 Mucin-like Mucin-like 8.1 5.4 8.3 12 4.8 8.3 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 5.9 6.9e-06 0.056 7 87 .. 441 521 .. 433 525 .. 0.85 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 6.9e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300746_3 441 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 521 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 8.3 0.0015 12 242 305 .. 463 521 .. 436 535 .. 0.62 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0015 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300746_3 463 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 521 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 6912.70 // Query: T170763_1 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.57 # Mc/sec: 14180.84 // Query: T170763_2 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 16127.23 // Query: T170763_3 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.54 # Mc/sec: 15231.27 // Query: T137445_1 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 9384.33 // Query: T137445_2 [L=2328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 9940.32 // Query: T137445_3 [L=2328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 9514.30 // Query: T005876_1 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 4976.76 // Query: T005876_2 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4976.76 // Query: T005876_3 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 4324.07 // Query: T093956_1 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.086 13.1 8.7 0.18 12.1 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 8.7 1.1e-05 0.18 8 50 .. 616 658 .. 615 665 .. 0.88 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.1e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T093956_1 616 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 658 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 711 (0.0436036); expected 326.1 (0.02) Passed bias filter: 334 (0.0204833); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 5483.26 // Query: T093956_2 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:00.73 # Mc/sec: 4506.79 // Query: T093956_3 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.69 # Mc/sec: 4763.90 // Query: T121801_1 [L=1629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 7639.82 // Query: T121801_2 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 7635.13 // Query: T121801_3 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 7511.99 // Query: T090543_1 [L=7454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-27 94.3 0.2 5.1e-27 93.4 0.2 1.4 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.4 0.2 3.1e-31 5.1e-27 3 84 .] 3424 3504 .. 3422 3504 .. 0.97 Alignments for each domain: == domain 1 score: 93.4 bits; conditional E-value: 3.1e-31 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G+k s+++l++++qt+e++cPWFpe+Gtldl++W+k+gkelk qat++g+ ip v++ w++i++ L+ T090543_1 3424 ASYLSFIKILLRRGGVKASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELK-QATREGKIIPRAVWNDWAIIKATLE 3504 679*****************************************************.**********************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.20u 0.41s 00:00:02.61 Elapsed: 00:00:00.85 # Mc/sec: 25087.80 // Query: T090543_2 [L=7454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-31 109.1 0.0 3.1e-31 108.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymera 1.2e-09 37.9 1.6 2.8e-09 36.8 1.6 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.5 0.0 3.8e-35 3.1e-31 1 219 [. 3680 3846 .. 3680 3848 .. 0.97 Alignments for each domain: == domain 1 score: 108.5 bits; conditional E-value: 3.8e-35 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 i+Kk+ g + ++ +d++a+n++i+ + + qpg++++ t +k +ll+ +D k++F+++p+++++ +++af++p T090543_2 3680 IQKKS-GRWCML----TDLRAINAAIQP---------MGPLQPGLPSPAMT--------------PKDWLLIIIDSKDCFFTIPVAKQDFEKFAFTIP 3749 78999.999997....7***********.........***********666..............99******************************* PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT- CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesgl 196 vn++e+ +r+++k+lpqG+ +SP++++ f+ ++l+++r +++++ +++Y+D il++ +++++l +++ +++ ++++gl T090543_2 3750 ------------------AVNNKEPATRFQWKVLPQGMLNSPTICQTFVAQVLQPMRDKFSDCCIIHYVDNILCAPETRDKLIDCYTFLQTEVANAGL 3829 ..................679999************************************************************************** PP -BEGGG-EEE.....ESSEEETT CS RVT_1 197 kinpeKtklvlfsgkseevkyLG 219 +i+ +K++ ++++yLG T090543_2 3830 TISSDKIQTS------TPFHYLG 3846 **********......8*****9 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.8 1.6 3.5e-13 2.8e-09 14 45 .. 4021 4052 .. 4013 4064 .. 0.86 Alignments for each domain: == domain 1 score: 36.8 bits; conditional E-value: 3.5e-13 HERV-K_REC 14 tseeqmklpstkkaepptwaqlkkltqlatky 45 t + q k+pstkkaep twaqlkkltqla k T090543_2 4021 TYNLQKKFPSTKKAEPSTWAQLKKLTQLAEKK 4052 566799***********************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.26u 0.38s 00:00:02.63 Elapsed: 00:00:00.88 # Mc/sec: 24232.53 // Query: T090543_3 [L=7454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-87 290.4 1.7 5.3e-87 289.7 1.7 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.9e-15 56.5 1.1 3.4e-15 55.7 1.1 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 0.00012 21.6 0.2 0.0002 20.8 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00081 19.2 0.1 0.0015 18.3 0.1 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 289.7 1.7 1.3e-90 5.3e-87 2 168 .. 4105 4270 .. 4104 4271 .. 0.98 Alignments for each domain: == domain 1 score: 289.7 bits; conditional E-value: 1.3e-90 HERV-K_env_2 2 vtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlve.vptvspisrftyhmvsgmslrprvnyl 95 +tw+dnpievyvn+s wvpgp+ddr pa+pe egmminisigy+yppicl +apgclmp++qnwl vptv+ s+ftyhmvsgms+ ++n l T090543_3 4105 ITWIDNPIEVYVNNSAWVPGPMDDRGPAQPE-EGMMINISIGYHYPPICLEKAPGCLMPTIQNWL-V*VPTVNATSKFTYHMVSGMSIGSQMNNL 4197 8*****************************7.7*******************************9.4449************************* PP HERV-K_env_2 96 qdfsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 qd syqrslkfrpkgkpcpkeipkesk+ evlvwe+c a++av+lqnn+fgtiidwaprgq+y++c+gq++sc T090543_3 4198 QDSSYQRSLKFRPKGKPCPKEIPKESKDPEVLVWEQCAADTAVVLQNNKFGTIIDWAPRGQLYYDCTGQAHSC 4270 ************************************************************************* PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.7 1.1 8.3e-19 3.4e-15 44 87 .] 4051 4094 .. 4049 4094 .. 0.97 Alignments for each domain: == domain 1 score: 55.7 bits; conditional E-value: 8.3e-19 HERV-K_REC 44 kylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 k lent+vtqtpe mllaalmivs vv+l+m+a++++++++y+a T090543_3 4051 KSLENTRVTQTPENMLLAALMIVSTVVSLPMSAGAATTNYTYWA 4094 88*****************************************7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.2 4.8e-08 0.0002 7 65 .. 5517 5577 .. 5508 5588 .. 0.80 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 4.8e-08 S-EEE......-THHHHCTB--.........-------HHHH...............HCCH CS RVT_1 7 gsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav..eellkalkkk 65 ++ Rp+sl+++++k+lnk++++ ++++++ ++ + q+ f pg + + ++ +k++ ++ T090543_3 5517 ENDRPVSLMNINVKILNKILVNLIQQCIKGIILHAQVEFIPGIQGWFNI*kSINVKYNPSH 5577 567***************************************9999999953333333333 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.1 3.6e-07 0.0015 2 60 .. 4478 4536 .. 4477 4541 .. 0.93 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 3.6e-07 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslkt 60 a ++l +vq+ + vn+ +kn + + Q +id+kl +++n l + v+ +G+ ++sl+ T090543_3 4478 AGIALHCSVQTTKYVNNWQKNSSRLWNSQTQIDQKLANQINDLRQTVIWMGDRLMSLEY 4536 568999************************************************99975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.30u 0.40s 00:00:02.70 Elapsed: 00:00:00.95 # Mc/sec: 22446.98 // Query: T071214_1 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 2968.70 // Query: T071214_2 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 3018.18 // Query: T071214_3 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 2968.70 // Query: T277343_1 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.64 # Mc/sec: 9315.58 // Query: T277343_2 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.57 # Mc/sec: 10279.26 // Query: T277343_3 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 8517.10 // Query: T338761_1 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 4929.07 // Query: T338761_2 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 5369.16 // Query: T338761_3 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-26 91.3 0.3 1.1e-25 90.6 0.3 1.3 1 Trypsin Trypsin 2.2e-10 40.8 0.7 4.1e-10 39.9 0.7 1.4 1 DUF1986 Domain of unknown function (DUF1986) Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.6 0.3 1.4e-29 1.1e-25 7 130 .. 248 371 .. 244 375 .. 0.91 Alignments for each domain: == domain 1 score: 90.6 bits; conditional E-value: 1.4e-29 TTTTSSTTEEEEEETTCEEEEEEEEEETTEEEEEGGGHTT......GGGEEEEESESBTTSETTTCEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTT CS Trypsin 7 aqkgsfpwqvslsvksgkhlCgGslisenwvlTAaHCvsn......asdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvkl 100 q g+ pwqvs+++++ khlCgGs+++ wvlTAaHC++ +v+vv+g++++++ + ++ +v+kvi+h++y+p +ld D+ ll l++pv++ T338761_3 248 VQNGECPWQVSIQMSR-KHLCGGSILHWWWVLTAAHCFRRtlldmaVVNVTVVMGTRTFSNIHS--ERKQVQKVIIHKDYKPPQLDSDLSLLLLATPVQF 344 688999*********9.8************************9999889999***987777777..79******************************** PP BSSBHCCBBCSTTHTTSTTTEEEEEESSBS CS Trypsin 101 gdtvrpiclpaassslpvgttclvsGwgrt 130 +++ +p+cl++++ ++ c+ + w +t T338761_3 345 SNFKMPVCLQEEE---RTWDWCWMAQWVTT 371 ***********55...58889999988665 PP >> DUF1986 Domain of unknown function (DUF1986) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.9 0.7 5e-14 4.1e-10 1 99 [. 253 356 .. 253 363 .. 0.88 Alignments for each domain: == domain 1 score: 39.9 bits; conditional E-value: 5e-14 DUF1986 1 wPwladvyleGdlicsGvlidkswvlvsesclsdvdlehsyvsv.vlGgaktkksvkgpyeqivrvdafkdvp....ksevvllhleskvsfsrhvlPtf 95 +Pw + + + c G ++ wvl c + + l+ v v v+ g++t +++++ +q+++v +kd s+++ll l+++v+fs+ +P+ T338761_3 253 CPWQVSIQMSRKHLCGGSILHWWWVLTAAHCFRRTLLDMAVVNVtVVMGTRTFSNIHSERKQVQKVIIHKDYKppqlDSDLSLLLLATPVQFSNFKMPVC 352 8********************************999988887764556789***************99998642333799******************99 PP DUF1986 96 vpes 99 + e T338761_3 353 LQEE 356 9874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 5184.02 // Query: T270281_1 [L=261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.64 # Mc/sec: 1166.68 // Query: T270281_2 [L=260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1328.24 // Query: T270281_3 [L=260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 1239.69 // Query: T338278_1 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.72 # Mc/sec: 5443.52 // Query: T338278_2 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 5763.73 // Query: T338278_3 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 5759.52 // Query: T081051_1 [L=720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.098 12.6 0.8 0.18 11.7 0.8 1.4 1 Cep57_CLD_2 Centrosome localisation domain of PPC89 Domain annotation for each model (and alignments): >> Cep57_CLD_2 Centrosome localisation domain of PPC89 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.8 1.1e-05 0.18 5 36 .. 8 40 .. 6 41 .. 0.94 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.1e-05 Cep57_CLD_2 5 vktL.qnrLdsltrklqvheeelkrLnkERdsa 36 v+tL + +L ++ +k+q+ e+ +k++ k +d + T081051_1 8 VNTLtKSHLRRMKHKVQMRESKRKTVLKKHDLF 40 89999************************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 3120.91 // Query: T081051_2 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-15 54.6 0.0 1.8e-14 53.7 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.7 0.0 1.1e-18 1.8e-14 115 208 .. 192 295 .. 188 316 .. 0.90 Alignments for each domain: == domain 1 score: 53.7 bits; conditional E-value: 1.1e-18 .........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 115 svrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtk 204 ++ ++ +++ + ++g +q +++SPllfn++++ l r +r++ ++v+l+++aDD++++ +++ + +ll+ ++++ k sg+kin +K++ T081051_2 192 QYHTEWAKAGSTPFENGKRQRCHVSPLLFNIVLEVLARTIRQEKerkciqigrEEVKLSLFADDVIVYLENPIVlAPNLLKLISDFSKVSGYKINVQKSQ 291 456788999*********************************99***************************77769************************ PP EE.. CS RVT_1 205 lvlf 208 ++l+ T081051_2 292 AFLY 295 *986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 3372.03 // Query: T081051_3 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-18 67.3 0.6 1.8e-18 66.7 0.6 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.7 0.6 1.1e-22 1.8e-18 1 127 [. 69 204 .. 69 208 .. 0.93 Alignments for each domain: == domain 1 score: 66.7 bits; conditional E-value: 1.1e-22 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+ ++++ pisl+++d+k+lnk++a++++++++k++ ++q+gf p + + ++ + ++++++ + k+++++++ +kaF++v++ l+ T081051_3 69 IPKPVrdttrKENFWPISLMNIDGKILNKILANQIQQHIKKHIYHEQVGFIPRMQGWFNIcksiNIIHHINRTNEKNHMIISIGAEKAFNKVQHLYMLKS 168 677777777788999************************************************88899998899999*********************** PP GG-EEET.........................TEEE CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegry 127 l++++++ + +++i++++ ++++++ +ng++ e ++ T081051_3 169 LNKLGIDGMYLKIIRAIYDKPTVNIILNGQKLEALP 204 *****************************9767665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.65 # Mc/sec: 3164.52 // Query: T133288_1 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.75 # Mc/sec: 4813.82 // Query: T133288_2 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 5823.17 // Query: T133288_3 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.60 # Mc/sec: 6017.28 // Query: T296175_1 [L=2981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 12728.56 // Query: T296175_2 [L=2981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.39s 00:00:01.84 Elapsed: 00:00:00.72 # Mc/sec: 11844.63 // Query: T296175_3 [L=2980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.78 # Mc/sec: 10929.84 // Query: T073200_1 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3714.15 // Query: T073200_2 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 3365.95 // Query: T073200_3 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 3117.89 // Query: T379420_1 [L=232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.52 # Mc/sec: 1276.37 // Query: T379420_2 [L=232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.59 # Mc/sec: 1124.94 // Query: T379420_3 [L=231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.63 # Mc/sec: 1048.97 // Query: T296176_1 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.77 # Mc/sec: 10481.04 // Query: T296176_2 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 12227.88 // Query: T296176_3 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:00.85 # Mc/sec: 9494.59 // Query: T144037_1 [L=1543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 7744.32 // Query: T144037_2 [L=1542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 9002.86 // Query: T144037_3 [L=1542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 8649.80 // Query: T373887_1 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 471 (0.0288851); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 4518.94 // Query: T373887_2 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4513.11 // Query: T373887_3 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-38 132.6 4.1 2.2e-38 131.9 4.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.9 4.1 1.3e-42 2.2e-38 2 209 .. 329 558 .. 328 574 .. 0.92 Alignments for each domain: == domain 1 score: 131.9 bits; conditional E-value: 1.3e-42 E-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGG CS RVT_1 2 pKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkl 92 pK+g +++yRpisl++++ k++ k++++ ++++++k++++n +gf p + + ++ +++l++++ k+k+++++ +D +kaFd+++ ++ ++l T373887_3 329 PKPGknitkKENYRPISLMNINAKIFTKILVNKIQQHMKKIIHHNEVGFIPTIQEWFNIcksiNVILHINRIKNKNHMIILIDAEKAFDKIQYPFMVKTL 428 56666666668*****************************************8888888*99999****9999*************************** PP G-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHH CS RVT_1 93 tafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqe 182 +++++ + +++ik+++ + ++++ +nge+ + ++ +g++qG++lSP+lfn++++ l r +r++ ++v+ll+ aD ++ + k++++ ++ T373887_3 429 SKIGIEGTCLKVIKAIYDKSTANLILNGEKLKAFPLRTGTRQGCPLSPCLFNIVLEVLARAIREEKerkdiqickEEVKLLLSADCMIAYLKNPKDsSKK 528 *****************************99*********************************99***************************6666*** PP HHHHHHHHHHHTT--BEGGG-EEE...... CS RVT_1 183 lleaveewlkesglkinpeKtklvlf...s 209 lle v e+ k s++kin +K+ ++l+ + T373887_3 529 LLELVNEFSKVSEYKINVHKSVALLYtnsD 558 **********************99875431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 682 (0.0418251); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 4513.11 // Query: T184494_1 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 5193.89 // Query: T184494_2 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 5193.89 // Query: T184494_3 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 275 (0.016865); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 4781.67 // Query: T111728_1 [L=4368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.33s 00:00:01.80 Elapsed: 00:00:00.69 # Mc/sec: 18110.30 // Query: T111728_2 [L=4368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:00.71 # Mc/sec: 17600.15 // Query: T111728_3 [L=4368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.38s 00:00:01.87 Elapsed: 00:00:00.74 # Mc/sec: 16886.63 // Query: T018783_1 [L=2257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-64 217.4 37.8 4.1e-36 124.5 14.1 2.2 2 CCDC144C CCDC144C protein coiled-coil region 0.007 16.3 1.1 0.007 16.3 1.1 1.9 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.8 15.7 3.6e-32 2.9e-28 3 96 .. 1907 2000 .. 1907 2001 .. 0.98 2 ! 124.5 14.1 5e-40 4.1e-36 184 304 .. 2085 2196 .. 2074 2197 .. 0.96 Alignments for each domain: == domain 1 score: 98.8 bits; conditional E-value: 3.6e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018783_1 1907 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 2000 599*****************************************************************************************95 PP == domain 2 score: 124.5 bits; conditional E-value: 5e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018783_1 2085 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2173 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018783_1 2174 KLMNECDHLKESLFQYEREKAER 2196 **********************9 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 1.1 8.5e-07 0.007 24 94 .. 2087 2156 .. 2083 2157 .. 0.95 2 ? -2.2 0.2 0.43 3.5e+03 59 80 .. 2198 2219 .. 2168 2227 .. 0.52 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 8.5e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018783_1 2087 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2156 68999********************************************************76.9999986 PP == domain 2 score: -2.2 bits; conditional E-value: 0.43 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018783_1 2198 VVVRQLQQEAADSLKKLTMLES 2219 3456666666666666655554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 9495.43 // Query: T018783_2 [L=2256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-17 61.5 9.6 6.6e-17 61.5 9.6 1.6 2 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.5 2.4 0.47 7.7e+03 28 107 .. 1468 1496 .. 1455 1505 .. 0.40 2 ! 61.5 9.6 4e-21 6.6e-17 96 185 .. 1999 2086 .. 1986 2088 .. 0.93 Alignments for each domain: == domain 1 score: -4.5 bits; conditional E-value: 0.47 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018783_2 1468 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1496 22222221...................................................133333444444444444433 PP == domain 2 score: 61.5 bits; conditional E-value: 4e-21 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018783_2 1999 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2086 689**********************9554.57..89*****************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 9778.84 // Query: T018783_3 [L=2256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.65 # Mc/sec: 9929.28 // Query: T336585_1 [L=3414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-14 52.9 1.0 4.3e-14 51.8 1.0 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 4.1e-08 33.3 0.0 6.8e-08 32.6 0.0 1.3 1 rve Integrase core domain 1.4e-07 30.5 2.6 1.4e-07 30.5 2.6 1.8 2 IN_DBD_C Integrase DNA binding domain 0.0025 17.7 0.3 0.006 16.5 0.3 1.6 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.8 1.0 1e-17 4.3e-14 5 35 .. 936 966 .. 932 967 .. 0.90 Alignments for each domain: == domain 1 score: 51.8 bits; conditional E-value: 1e-17 -TTT-SSBS-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 5 CpRCkkgkHwardChskfdknGnpLsanegr 35 p+CkkgkHwa++Chskfdk+Gn s+n r T336585_1 936 GPKCKKGKHWANECHSKFDKEGNSISGNAMR 966 69*************************9866 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.6 0.0 1.7e-11 6.8e-08 45 118 .. 1632 1702 .. 1607 1703 .. 0.80 Alignments for each domain: == domain 1 score: 32.6 bits; conditional E-value: 1.7e-11 rve 45 emdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 e + v + l + +a g p + +Dn++ y s+++++f + ++i++ + p+++q +++vEr+ lk++ T336585_1 1632 E-PSACVKCHLLQCFAVMGI--PASIKTDNAPGYPSQTLATFFSLWNIKHITGIPYNSQGQAIVERMYLSLKQQ 1702 3.333334444456777777..**********************************************999986 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 2.6 3.5e-11 1.4e-07 4 49 .. 1757 1801 .. 1754 1802 .. 0.92 2 ? -3.4 0.0 1.4 5.7e+03 18 31 .. 2961 2975 .. 2961 2976 .. 0.80 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 3.5e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+d +++W +++++grG++cv P ++++++w+P R +++ T336585_1 1757 LVWWRDPITKRWEI-GKIITWGRGYACVSPGQNQQPIWIPSRHLKP 1801 689*********84.69*************************9996 PP == domain 2 score: -3.4 bits; conditional E-value: 1.4 EEEEEE.EETTEEEE CS IN_DBD_C 18 PdpvLi.kgrGavcv 31 P+p L+ +g G vc+ T336585_1 2961 PQPWLTeEGTGKVCL 2975 78888736******8 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.3 1.5e-06 0.006 23 73 .. 1837 1887 .. 1816 1900 .. 0.80 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 1.5e-06 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalv 73 t +++pptw q +kl+q+a l + t + +++a + +++ v+ + T336585_1 1837 NTHRTQPPTWGQNRKLSQMAEENLRKAGQPVTMNNLMIALIAVITTAVSIP 1887 6899*****************999999888888888888777777766655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.51u 0.38s 00:00:01.89 Elapsed: 00:00:00.76 # Mc/sec: 12851.15 // Query: T336585_2 [L=3413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-40 137.0 0.0 9.4e-40 136.5 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 3.4e-14 52.4 2.3 9.7e-14 50.9 2.3 1.9 1 Integrase_Zn Integrase Zinc binding domain 1.2e-12 48.1 0.0 1.9e-12 47.4 0.0 1.3 1 RNase_H RNase H 2.1e-07 30.6 0.0 3.4e-07 29.9 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00013 22.0 0.0 0.00025 21.1 0.0 1.4 1 rve Integrase core domain 0.0034 17.2 6.2 0.0034 17.2 6.2 2.5 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.081 12.5 2.5 0.17 11.5 2.5 1.5 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.5 0.0 4e-43 9.4e-40 1 205 [] 673 881 .. 673 881 .. 0.92 Alignments for each domain: == domain 1 score: 136.5 bits; conditional E-value: 4e-43 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqs.qlm 94 +k Lk++k+a++qygp+sp v+ ++++a +p d l+ a+ + ++l+ ++ w +e + ++ +a++ i+i +d+llg g + +m T336585_2 673 FKLLKEFKQAINQYGPGSPLVMGQLKNVAVSNrmIPTDEDALT*AClTPAHFLQfKTSWADEASIQ-AAHNAQAQPRINIAADQLLGVGGWAGFDA*LVM 771 689***********************98755445******99897757899999889999998888.555555669****************9999999* PP Gag_p24 95 qnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCq 193 q +++e++r ++++a eki + g++ +s++ i+QGp py df+aRl+++l+k +ad +a+d++++ La++NANp+Cq++l +r+++ l d+++aC+ T336585_2 772 QD-DAIEHLRGVCIRAGEKITSGGKQYPSFSAIKQGPRKPYVDFIARLQESLEKMIADSAAQDIVLQLLAFDNANPDCQAAL*P-IREKAHLVDYIKACD 869 99.****************************************************************************98554.67999********** PP Gag_p24 194 gvggavhkarvl 205 g+gg hka ++ T336585_2 870 GIGGNLHKATLM 881 *********998 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.9 2.3 4.2e-17 9.7e-14 1 37 [. 1540 1576 .. 1540 1577 .. 0.98 Alignments for each domain: == domain 1 score: 50.9 bits; conditional E-value: 4.2e-17 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+q CptCq T336585_2 1540 ARHFHNLTHVNASGLKRRCSITWKEAKAIIQRCPTCQ 1576 899*********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.4 0.0 8.3e-16 1.9e-12 4 142 .. 1412 1537 .. 1409 1538 .. 0.76 Alignments for each domain: == domain 1 score: 47.4 bits; conditional E-value: 8.3e-16 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +tDGs++ g+a + +k + ++++ +++++aEL Avie+L a d +n+++DS+Yvv+ tq ++ ++ + t+eq ++ T336585_2 1412 FHCFTDGSSN-----GKASYSGSKS----KVFQMP-YTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIESAQLRFH--TDEQ--LMTl 1492 5689****88.....8888854433....445555.67****************..8999************.8888888655333..4444..4442 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++l ++ + + ++++h++ + ++gN+maDrl +a+ T336585_2 1493 fTQLPRAV--RSRMHPFYITHIRSRTPFpgplAEGNQMADRLIANAI 1537 23555555..345899********9988888889********98875 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.9 0.0 1.5e-10 3.4e-07 2 111 .. 1333 1409 .. 1332 1429 .. 0.83 Alignments for each domain: == domain 1 score: 29.9 bits; conditional E-value: 1.5e-10 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +Kk+ g++R++ +d++a+n++++ + qpg++++ + +k++ l+ +Dlk+ F++++l+e++ + +af++p T336585_2 1333 KKKS-GKWRML----TDLRAINSVTQP---------MGALQPGLPSPTII--------------PKNWPLIVIDLKDSFFTISLAEQDCEGFAFTIP- 1401 6888.*****7....7***********.........***********555..............9********************************. PP ............ CS RVT_1 100 klinliksflst 111 ++++ T336585_2 1402 ----AVNNLQPA 1409 ....44544444 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 1.1e-07 0.00025 3 36 .. 1593 1624 .. 1592 1629 .. 0.90 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 1.1e-07 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrl 36 +p+++wq+Dvt+++ + g+ ay++v +d+fs++ T336585_2 1593 EPNSVWQMDVTHLP--SFGRLAYVHVCVDTFSHF 1624 69************..56777***********97 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 7 1.6e+04 10 14 .. 611 615 .. 611 615 .. 0.91 2 ! 17.2 6.2 1.5e-06 0.0034 2 18 .] 900 916 .. 899 916 .. 0.93 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 7 SSTTT CS zf-CCHC 10 GHiar 14 GH+a+ T336585_2 611 GHWAK 615 9**97 PP == domain 2 score: 17.2 bits; conditional E-value: 1.5e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T336585_2 900 ACFNCGKHGHTKKECRK 916 7**************86 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 2.5 7.3e-05 0.17 31 48 .. 898 915 .. 897 916 .. 0.91 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 7.3e-05 zf-CCHC_4 31 prfCfiCgllGHsdkeCp 48 p Cf+Cg GH++keC T336585_2 898 PGACFNCGKHGHTKKECR 915 678**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 343 (0.0210352); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.64u 0.43s 00:00:02.06 Elapsed: 00:00:00.82 # Mc/sec: 11907.33 // Query: T336585_3 [L=3413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-24 86.3 0.1 2.6e-24 85.3 0.1 1.5 1 RVP Retroviral aspartyl protease 7.9e-20 70.7 0.0 1.2e-19 70.1 0.0 1.2 1 dUTPase dUTPase 9.1e-08 31.8 1.1 2.6e-07 30.3 1.1 1.8 1 G-patch G-patch domain 2.8e-05 23.8 0.1 4.6e-05 23.1 0.1 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycopro ------ inclusion threshold ------ 0.069 13.6 0.0 0.13 12.7 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.3 0.1 8e-28 2.6e-24 2 99 .. 1119 1215 .. 1118 1217 .. 0.98 Alignments for each domain: == domain 1 score: 85.3 bits; conditional E-value: 8e-28 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 ++rP +++ i+gk++++l+DtGAd++++s +++P wp+ ++ ++ G+g+a e++qs++ +++ + + ++g+++p+i++ +p+nl+GrdlLq++g + T336585_3 1119 DKRPTCEITIQGKKFKGLVDTGADISILSLQHWPSAWPIPPTQFNIVGVGKAPEVYQSSYVLHCEGPDGQSGTIQPIITS-VPINLWGRDLLQQWGTQ 1215 68******************************************************************************.**************987 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 0.0 3.7e-23 1.2e-19 4 112 .. 988 1098 .. 985 1110 .. 0.86 Alignments for each domain: == domain 1 score: 70.1 bits; conditional E-value: 3.7e-23 TBEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 4 eiptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + + +++++sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l+R +l++kg+ +++gvidsdy+Ge+++v+ +t+ + k k g+RiAqL+ T336585_3 988 QCLSPATAGSAAVDLCCTKAVSLLPgEPLQKVPTGVCGPLPAGTIGLVLGRPSLSLKGVQIHTGVIDSDYNGEIQIVI--STSVPWKAKPGERIAQLL 1083 567899*******************555689*****************************************888887..68899************* PP EEEBEC...GEEEEE CS dUTPase 101 farilt...aeleev 112 + ++++ +e++++ T336585_3 1084 ILPYVKmgkSEIKQT 1098 **9999443344333 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 1.1 7.9e-11 2.6e-07 7 44 .. 1229 1266 .. 1224 1267 .. 0.94 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 7.9e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+G Gk+ qG +eP++++++ r lG+ T336585_3 1229 HMMHEMGYVPGMGTGKNLQGLKEPLQVEKQSSRQRLGY 1266 6********************************99987 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.1 1.4e-08 4.6e-05 125 165 .. 1953 1993 .. 1947 1996 .. 0.89 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 1.4e-08 HERV-K_env_2 125 evlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 e e+c+a+ a +l+n+ g ii+w+p+g f nc+ q+ T336585_3 1953 ERTCLEDCIAEQAEVLHNDSCGIIINWSPKGMFSLNCTSQS 1993 56678********************************9996 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 3.9e-05 0.13 2 25 .. 1125 1148 .. 1124 1158 .. 0.92 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.9e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +i+s T336585_3 1125 EITIQGKKFKGLVDTGADISILSL 1148 689******************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 563 (0.0345272); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.65u 0.43s 00:00:02.08 Elapsed: 00:00:00.88 # Mc/sec: 11095.47 // Query: T105200_1 [L=229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 992.62 // Query: T105200_2 [L=228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.57 # Mc/sec: 1124.60 // Query: T105200_3 [L=228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 1207.91 // Query: T381762_1 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2808.81 // Query: T381762_2 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.7 6.4 8.0 9.1 5.9 8.0 1.1 1 Rifin_STEVOR Rifin/stevor family Domain annotation for each model (and alignments): >> Rifin_STEVOR Rifin/stevor family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 8.0 0.00056 9.1 273 295 .. 359 381 .. 346 383 .. 0.81 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00056 Rifin_STEVOR 273 aiiaSiiailvIvlimvIiYliL 295 ++Sii+i++I +i++Ii liL T381762_2 359 RATVSIIIIIIILIIIIIIMLIL 381 46789999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 648 (0.03974); expected 326.1 (0.02) Passed bias filter: 317 (0.0194407); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.71 # Mc/sec: 2611.01 // Query: T381762_3 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.9 0.1 2.3e-05 24.9 0.1 1.4 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.1 1.4e-09 2.3e-05 34 99 .. 528 592 .. 514 600 .. 0.90 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 1.4e-09 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381762_3 528 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 592 579***********************************************99987.7777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 2852.03 // Query: T125905_1 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.66 # Mc/sec: 9020.28 // Query: T125905_2 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 9302.17 // Query: T125905_3 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.71 # Mc/sec: 8385.05 // Query: T010858_1 [L=1646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 7719.55 // Query: T010858_2 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.75 # Mc/sec: 6274.75 // Query: T010858_3 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.61 # Mc/sec: 7714.86 // Query: T119708_1 [L=12521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-40 138.2 0.5 5.2e-40 137.2 0.5 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.2 0.5 3.2e-44 5.2e-40 4 176 .. 1456 1640 .. 1453 1648 .. 0.97 Alignments for each domain: == domain 1 score: 137.2 bits; conditional E-value: 3.2e-44 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 k+ +++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +k F++++ ++ l++l+++++ T119708_1 1456 KK-NNFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIhksiNVIHHINRTKDKNHMIISIDAEKVFNKIKQPFMLKTLNKLGI 1552 33.69**************************************************99999999999999***************************** PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 + + +++i++++ ++++++ +n ++ e + k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ T119708_1 1553 DGMYLKIIRAIYDKPTANIILNRQKLEAFLLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLEN 1640 ************************99*********************************99************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.49u 0.44s 00:00:03.93 Elapsed: 00:00:01.00 # Mc/sec: 35820.45 // Query: T119708_2 [L=12521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-110 368.2 20.2 4.2e-109 364.6 20.2 2.0 1 Transposase_22 L1 transposable element 6.2e-05 22.7 0.5 0.00011 21.9 0.5 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.026 14.6 0.0 0.054 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 364.6 20.2 7.7e-113 4.2e-109 19 367 .. 584 906 .. 572 907 .. 0.91 Alignments for each domain: == domain 1 score: 364.6 bits; conditional E-value: 7.7e-113 XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXX CS Transposase_22 19 erstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellel 109 + Pt+e+sss at e++++++ f+elr+e+++++ +++elk ++++++ke + +k ++e + v + + l+el T119708_2 584 ISAFPTEEHSSSQAT--EQSWMENYFDELREEGFRRSvitNFSELKKDVRTHCKEAKnLEKRLDEWLTRINS------------VEKTLNYLMEL 664 45679**********..*******************8555799***********998777777775444333............22233479*** PP XXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT CS Transposase_22 110 ktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqsl.qviqdtvkrPnlrliGvdesed 202 kt ++e ++ + s+s d++eervs +ed+++e+++e k+rekr+k+++qsl i d vkrPnl liGv+es+ T119708_2 665 KTMAREHHDACT------------------SIS-S*FDQVEERVSVIEDQMNEMKQEEKFREKRVKRNKQSL*E-ICDCVKRPNLHLIGVPESDG 739 ********9999..................775.5559********************************9887.78****************** PP --HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHH CS Transposase_22 203 eqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek.GrvtlkGkPirltadlsaetlkarr 296 e+ +klen+l++ii+enfPnl+++an +iqei+r P+r++s+r+++rhiivr+tkv++k+k+l+a+r G vt kGkPirltad+saetl+arr T119708_2 740 ENATKLENTLQDIIQENFPNLARQANFQIQEIQRMPQRYSSRRTTPRHIIVRFTKVEMKEKMLRAAR-E*GWVTHKGKPIRLTADISAETLQARR 833 ******************************************************************9.5667*********************** PP HHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 297 ewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 ew+++++ilkek+fqPr++yPakls+i++Geik f +k++lrd+++trPal+++lk + er+++yq+l++ T119708_2 834 EWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTEKQMLRDFVTTRPALQEFLKKalNVERNNQYQPLQNL 906 ********************************************************999************95 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.5 2.1e-08 0.00011 17 118 .. 1054 1163 .. 1040 1164 .. 0.79 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 2.1e-08 Exo_endo_phos_2 17 nllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkeg.ptfeseng..ssiiDltltsdnl 100 +++ l++l ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l + + k++ tf + + iD ++ s+ l T119708_2 1054 FIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSMRHKvNKDIQDLNSALHQANLIDIyrtfHP-KSTeYTFFPAPHrtYLKIDHIVGSKAL 1143 455666677777765.8**************998888899999*********999966777444.44448887766644688********** PP Exo_endo_phos_2 101 aks..leleeedlgSDHrpi 118 + + ++ ++++SDH++i T119708_2 1144 LSKckRTEIITNSLSDHSAI 1163 ***986667799*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 1e-05 0.054 2 113 .] 943 1160 .. 935 1160 .. 0.69 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1e-05 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.............................EEEEEEESSSTTSSEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxx RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla.............................dadaskfgtgkgqggv 66 t Nvng ++++ ++ +la+++++ + ++ + s ++++ ++d++ ++ +++++g T119708_2 943 TLNVNG----LNSPIKRHRLANWIESR-PISVLYSG----DPSHMQRHT*aqnkgmeedlpsk*ktkkkagvailvsdKTDFKPTKIKRDKEGH 1027 777777....66667777777777544.43333222....122222233555555555555566554444444444443344444444444555 PP EEEECSEEEEE...............................EEEEEE-SS........................................... CS xxxxxxxxxxx...............................xxxxxxxxx........................................... RF Exo_endo_phos 67 avlsrfpltsl...............................vivlGDfNa........................................... 86 ++++ ++++ i++GDfN+ T119708_2 1028 YIMVKGSIQQEltilnicapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrsmrhkvnkdiqdlnsalhqanlidiyrtfhpkstey 1121 555555554448889999999999999999999999999999*********9999999999999999999999999999999999999999999 PP ...........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ...........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ...........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + ++ SDH T119708_2 1122 tffpaphrtylKIDHIVGSKALLSKCKRTEIITNSlSDH 1160 9999999988888*****996666655555555557999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.63u 0.49s 00:00:04.12 Elapsed: 00:00:01.12 # Mc/sec: 31982.55 // Query: T119708_3 [L=12521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.30u 0.51s 00:00:03.80 Elapsed: 00:00:00.97 # Mc/sec: 36928.30 // Query: T138148_1 [L=8108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1399 (0.0857966); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 126 (0.00772722); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.83u 0.52s 00:00:05.35 Elapsed: 00:00:01.11 # Mc/sec: 20896.95 // Query: T138148_2 [L=8108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1287 (0.078928); expected 326.1 (0.02) Passed bias filter: 374 (0.0229363); expected 326.1 (0.02) Passed Vit filter: 120 (0.00735925); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.67u 0.54s 00:00:05.21 Elapsed: 00:00:01.03 # Mc/sec: 22520.01 // Query: T138148_3 [L=8108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1173 (0.0719367); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.94u 0.47s 00:00:04.41 Elapsed: 00:00:01.07 # Mc/sec: 21678.14 // Query: T004133_1 [L=1213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1316 (0.0807065); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.41s 00:00:01.72 Elapsed: 00:00:00.77 # Mc/sec: 4506.74 // Query: T004133_2 [L=1212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 5025.11 // Query: T004133_3 [L=1212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 5503.69 // Query: T155816_1 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.59 # Mc/sec: 7636.96 // Query: T155816_2 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 7636.96 // Query: T155816_3 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 6172.34 // Query: T353291_1 [L=2694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.76 # Mc/sec: 10140.89 // Query: T353291_2 [L=2694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.35s 00:00:01.77 Elapsed: 00:00:00.99 # Mc/sec: 7784.93 // Query: T353291_3 [L=2693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.77 # Mc/sec: 10005.47 // Query: T324409_1 [L=16499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.24u 0.54s 00:00:04.78 Elapsed: 00:00:01.03 # Mc/sec: 45826.05 // Query: T324409_2 [L=16498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.38u 0.59s 00:00:04.97 Elapsed: 00:00:01.20 # Mc/sec: 39331.64 // Query: T324409_3 [L=16498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0094 15.5 0.0 0.019 14.5 0.0 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.0 1.2e-06 0.019 2 19 .] 6126 6143 .. 6125 6143 .. 0.93 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.2e-06 DUF1725 2 FagKWMELEnIILSEisQ 19 a++WM LE+I+ SE sQ T324409_3 6126 YAATWMNLEDIMESETSQ 6143 69*************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.97u 0.48s 00:00:04.45 Elapsed: 00:00:00.86 # Mc/sec: 54881.36 // Query: T009704_1 [L=4495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.27s 00:00:01.51 Elapsed: 00:00:00.55 # Mc/sec: 23380.78 // Query: T009704_2 [L=4495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.54 # Mc/sec: 23813.76 // Query: T009704_3 [L=4495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.30s 00:00:01.37 Elapsed: 00:00:00.52 # Mc/sec: 24729.67 // Query: T156685_1 [L=1883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.50 # Mc/sec: 10773.89 // Query: T156685_2 [L=1883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 10562.63 // Query: T156685_3 [L=1883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 8287.60 // Query: T166767_1 [L=1610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00053 19.5 0.0 0.00083 18.9 0.0 1.3 1 ubiquitin Ubiquitin family Domain annotation for each model (and alignments): >> ubiquitin Ubiquitin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 5.1e-08 0.00083 11 69 .. 61 118 .. 50 121 .. 0.90 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 5.1e-08 EEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBTGGHTTSTTEEEEEEE CS ubiquitin 11 itleveesdtveelKekiaekegipadqqrLiykGkvLedertleeygiqdgstihlvl 69 ++l+v + dt+++l +++ +g+ + ++y+ ++L+d++t+++ +qdgs++ lv T166767_1 61 LPLTVRPRDTLSDLRAQLV-GQGVSSWKRAFYYNARRLDDHQTVRDARLQDGSVLLLVS 118 578999***********98.789999999**************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.72 # Mc/sec: 6397.13 // Query: T166767_2 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 6575.82 // Query: T166767_3 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 6769.23 // Query: T124793_1 [L=1641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 7451.78 // Query: T124793_2 [L=1641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 6803.80 // Query: T124793_3 [L=1640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 12.8 0.7 0.16 11.5 0.7 1.6 1 ArgoL1 Argonaute linker 1 domain Domain annotation for each model (and alignments): >> ArgoL1 Argonaute linker 1 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.7 9.7e-06 0.16 19 34 .. 503 518 .. 496 524 .. 0.83 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 9.7e-06 ArgoL1 19 gGleawrGfyqSvRpt 34 G++a+rG +qSvR T124793_3 503 QGVQACRGCFQSVRTQ 518 59************53 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 6799.65 // Query: T229453_1 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 7449.45 // Query: T229453_2 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.88 9.2 7.0 1.9 8.1 7.0 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 7.0 0.00012 1.9 1 25 [. 1279 1303 .. 1278 1305 .. 0.89 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00012 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T229453_2 1279 GRKEGREGGREEGRKEGRKEGRKEG 1303 7789999999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.65 # Mc/sec: 8710.13 // Query: T229453_3 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 8205.19 // Query: T138063_1 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.69 # Mc/sec: 3466.17 // Query: T138063_2 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3920.74 // Query: T138063_3 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.68 # Mc/sec: 3512.93 // Query: T071824_1 [L=9007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.77u 0.46s 00:00:03.23 Elapsed: 00:00:00.99 # Mc/sec: 26027.77 // Query: T071824_2 [L=9007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 290 (0.0177849); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.87u 0.46s 00:00:04.33 Elapsed: 00:00:01.13 # Mc/sec: 22603.07 // Query: T071824_3 [L=9007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 745 (0.0456887); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 108 (0.00662333); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.01u 0.50s 00:00:05.51 Elapsed: 00:00:01.34 # Mc/sec: 19229.47 // Query: T027958_1 [L=5849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.49s 00:00:02.63 Elapsed: 00:00:00.90 # Mc/sec: 18592.22 // Query: T027958_2 [L=5849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.39s 00:00:02.56 Elapsed: 00:00:00.89 # Mc/sec: 18801.12 // Query: T027958_3 [L=5849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.09u 0.47s 00:00:02.55 Elapsed: 00:00:00.93 # Mc/sec: 17992.47 // Query: T156740_1 [L=1409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 6107.44 // Query: T156740_2 [L=1409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 6201.40 // Query: T156740_3 [L=1409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 6398.27 // Query: T341070_1 [L=738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 3640.16 // Query: T341070_2 [L=738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 3518.82 // Query: T341070_3 [L=737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 3400.70 // Query: T323241_1 [L=1033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.056 13.5 22.0 1.6 8.8 8.4 3.8 2 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 8.4 0.0001 1.6 7 28 .. 270 303 .. 264 307 .. 0.92 2 ? 7.7 5.8 0.00023 3.7 8 39 .. 312 343 .. 306 369 .. 0.83 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 7 srrpLqa............paslqasglsrpsaq 28 +rpLqa pas+qas++++++a+ T323241_1 270 AWRPLQAqlflpaaspgppPASQQASSFGSAPAG 303 69*****************************985 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 + Lq + l++sgl +ps++ AsaGp+ + T323241_1 312 SQALQ-AHILPPSGLYSPSSGRRRASAGPTVaS 343 6789*.999999999999999999999998753 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 4925.40 // Query: T323241_2 [L=1033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 21.2 6.4 0.00023 21.2 6.4 6.4 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.4 0.53 8.7e+03 35 48 .. 120 133 .. 113 135 .. 0.81 2 ? -3.9 0.0 0.98 1.6e+04 40 48 .. 150 158 .. 141 159 .. 0.82 3 ? -2.1 0.1 0.27 4.4e+03 20 47 .. 187 214 .. 186 216 .. 0.82 4 ? 1.4 1.2 0.022 3.5e+02 34 48 .. 264 278 .. 254 280 .. 0.63 5 ! 21.2 6.4 1.4e-08 0.00023 26 50 .] 297 321 .. 276 321 .. 0.82 6 ! 8.3 1.0 0.00014 2.3 3 22 .. 328 346 .. 326 349 .. 0.90 7 ? -1.9 0.0 0.22 3.6e+03 21 47 .. 668 694 .. 665 695 .. 0.78 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.53 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323241_2 120 GPGRPTCSSSRPTS 133 77778888888877 PP == domain 2 score: -3.9 bits; conditional E-value: 0.98 DUF4705 40 pagLsrPss 48 ++ L+rP+s T323241_2 150 ELDLERPTS 158 567999998 PP == domain 3 score: -2.1 bits; conditional E-value: 0.27 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs 47 ++ r++a ++ A++ p l ++L + s T323241_2 187 RCHRRAGAEPGEATVRPDLGLGSLASGS 214 577899999999**99999888887764 PP == domain 4 score: 1.4 bits; conditional E-value: 0.022 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323241_2 264 PGLCLPHGGLCRPSC 278 345556667777755 PP == domain 5 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323241_2 297 LAQLPPAFVDPEVSAAKLFRPTSCL 321 48**********************9 PP == domain 6 score: 8.3 bits; conditional E-value: 0.00014 DUF4705 3 pAPasrrpLqapaslqasgl 22 pA a++ +Lq +++l+++g T323241_2 328 PALAGEERLQ-APLLPPRGV 346 9*********.*******96 PP == domain 7 score: -1.9 bits; conditional E-value: 0.22 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 g++++ + A +G ++gL+rP+ T323241_2 668 GPGQADLTTVWACRGRREEELGLERPT 694 666666666778889999999****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5277.21 // Query: T323241_3 [L=1033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0062 16.6 4.8 0.0062 16.6 4.8 5.8 5 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.1 0.68 1.1e+04 27 45 .. 183 198 .. 178 199 .. 0.73 2 ! 9.7 3.8 5.4e-05 0.88 25 50 .] 265 290 .. 262 290 .. 0.87 3 ! 16.6 4.8 3.8e-07 0.0062 2 36 .. 316 349 .. 315 354 .. 0.95 4 ? 0.1 1.0 0.053 8.6e+02 6 14 .. 408 426 .. 406 455 .. 0.63 5 ? -2.3 0.1 0.3 4.8e+03 37 47 .. 642 652 .. 629 652 .. 0.69 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.68 DUF4705 27 aqLpvAsaGpklppagLsr 45 ++++ A +G++l+ L r T323241_3 183 LGPGDAIGGQELS---LAR 198 6778899999997...444 PP == domain 2 score: 9.7 bits; conditional E-value: 5.4e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323241_3 265 ASASRMAASAGPAVPPGCISRPTPCL 290 5666679******************8 PP == domain 3 score: 16.6 bits; conditional E-value: 3.8e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 gp Pas++p q +++ q + rp +Lp As+G T323241_3 316 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGG 349 899********.*********************95 PP == domain 4 score: 0.1 bits; conditional E-value: 0.053 DUF4705 6 asrrpLqa..........p 14 a+rr+Lq+ p T323241_3 408 AGRRRLQDdlglqrspggP 426 7899999844444433321 PP == domain 5 score: -2.3 bits; conditional E-value: 0.3 DUF4705 37 klppagLsrPs 47 ++p++gL rP+ T323241_3 642 ERPELGLGRPT 652 56777999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 5184.63 // Query: T280394_1 [L=2638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-12 48.2 0.0 2.1e-12 47.3 0.0 1.4 1 RNase_H RNase H 0.00033 20.4 1.8 0.0014 18.4 1.8 2.2 1 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.0 2.6e-16 2.1e-12 3 111 .. 1634 1741 .. 1632 1749 .. 0.86 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 2.6e-16 SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHT CS RNase_H 3 avvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvk 99 ++++Y+DGs+l ++g ++a + + +e++ s+p+++ + ++ aEL A+++aL+ +++ +n+ytDSkY++ ++ + wk+++ ts ++p+k T280394_1 1634 DLNLYADGSSLVENGIRKAHYAIVSEVTVLESKPIPPWTRAQLAELVALTQALElG--KGKIINVYTDSKYAYLILHAHAAVWKEREF-LTSGGTPIK 1728 5789*********99999999665565668889999******************55..99**************88998999988777.788999*** PP T.HHHHHHHHHCH CS RNase_H 100 n.kelaellkela 111 ke++ell+++ T280394_1 1729 YqKEIMELLHAVQ 1741 9788998886654 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 1.8 1.8e-07 0.0014 1 17 [. 961 977 .. 961 978 .. 0.93 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.8e-07 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 r+Cy CG GH+++dCp T280394_1 961 RACYQCGLQGHFKKDCP 977 58**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1111 (0.0681344); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.68u 0.41s 00:00:02.09 Elapsed: 00:00:00.86 # Mc/sec: 8775.43 // Query: T280394_2 [L=2638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1230 (0.0754324); expected 326.1 (0.02) Passed bias filter: 418 (0.0256347); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.37s 00:00:02.31 Elapsed: 00:00:00.82 # Mc/sec: 9203.50 // Query: T280394_3 [L=2637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-19 69.1 0.4 4.5e-19 68.4 0.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 1.9e-12 47.0 0.0 3.3e-12 46.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 5.2e-10 39.1 0.0 8e-10 38.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 2.7e-05 24.3 0.0 5.7e-05 23.2 0.0 1.6 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.12 12.1 0.0 0.21 11.3 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.4 0.4 1.4e-22 4.5e-19 396 496 .. 2066 2163 .. 2058 2165 .. 0.92 Alignments for each domain: == domain 1 score: 68.4 bits; conditional E-value: 1.4e-22 .XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH.HHHHHTGGGTSHHHHHTS--------H CS TLV_coat 396 valtlallLgGLgiaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskl.eksltslaevvlQNRR.GLDlLfleeGGlCaALkEeCCFyadks 490 +a++l++l+ GLg+a+++g G+tgl s+ ++ L + +q++++sI l +++sla v lQN LDlL++e+GG C+ L EeCCFy T280394_3 2066 MAIQLIPLFIGLGMATATGMGVTGLsTSLSYYHTLLKDFSDSLQEITKSILTL*S-QIDSLAAVTLQN-H*DLDLLTAEKGGFCTFLGEECCFY---- 2157 79************************************************77665.7***********.444**********************.... PP HHHHHH CS TLV_coat 491 givrds 496 vrds T280394_3 2158 TTVRDS 2163 667775 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.3 0.0 1e-15 3.3e-12 4 161 .. 709 868 .. 706 873 .. 0.78 Alignments for each domain: == domain 1 score: 46.3 bits; conditional E-value: 1e-15 Gag_p30 4 pfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvlleark.....nvpgedgrpt.....qlpnevdeafpltrpd 93 pfs sdl + k + fs+ q + t + tw ll+ lt +e++ l ar + + r t ++pn ++a+p p+ T280394_3 709 PFSLSDLKQIKVDLGKFSDVLQG-------LGQTFDLTWRCVLLLLDQTLTFNEKNVALDAAREfgdtwYLSQVNDRMTakerdKFPN-SQQAIPSMDPH 800 88888888888887777765444.......4457888999999999999999999987777775222221222233333111113444.47899****** PP Gag_p30 94 wdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydped 161 wd ++ +g s k ++ g+r ++ n + + +++qgk+e+p+afle+l+e+ r+yt p++ T280394_3 801 WDLNSNHGDWSRKHLLTSVIEGVRRIRKKSMNYSMMSTITQGKKENPSAFLEQLQETLRKYTSLSPNS 868 **********9999999***********************************************9986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.5 0.0 2.4e-13 8e-10 2 222 .] 1218 1383 .. 1217 1383 .. 0.82 Alignments for each domain: == domain 1 score: 38.5 bits; conditional E-value: 2.4e-13 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +K++ g++R++ d+++ n+ ++ L ++ ++++ + + + +a++++ l lk+aF+ +pl+ +++ l+af pt T280394_3 1218 QKPN-GQWRLV----QDLRLTNESVIP-LYTI----VPNPYTLLSQ----------------IPEEAEWFAVLGLKDAFFCIPLHSDSQFLFAFEDPT 1289 6888.888886....688888888888.3333....3333333222................35678******************************6 PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T........TEEECTTEEEEEESSHHHHHHHH.HHHHHHHHHT CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra..kgvtllrYaDDililskskeelqell.eaveewlkes 194 + + ++++lp G+ SP lf ++ ++l + + +g+ +l+Y+DD+l++++ + ++q++ + + ++l++ T280394_3 1290 D----------------------HTSQITWTVLPHGFRDSPHLFDQALA---QDLGH-F*sPGILVLQYVDDLLLATSLEASCQQAT*D-LLNFLANQ 1360 5......................4899*****************98765...45554.77789***************99999887444.789***** PP T--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 195 glkinpeKtklvlfsgkseevkyLGvtl 222 g+ ++ K++l+l ++vkyLG++l T280394_3 1361 GCMASKLKVQLCL-----QQVKYLGLIL 1383 ************5.....*******975 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 1.7e-08 5.7e-05 19 100 .. 1049 1125 .. 1048 1126 .. 0.92 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.7e-08 EE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 19 llDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 llDtG +v+ + P + ++++++qGi+ + ++s+ ++ + f++ +l++p++p++llGrd+L k g+ + T280394_3 1049 LLDTGVASSVLI--SCPRQ--LSSRSVTIQGILRQPvTWYFSHLLSCNWETLLFSH--DFLVMPGSPIPLLGRDILAKAGAII 1125 89*******996..58888..889***********98999****************..*******************998765 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 6.3e-05 0.21 104 149 .. 816 861 .. 775 867 .. 0.90 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 6.3e-05 Gag_p24 104 rrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrke 149 + ++ + ++i +++ + + +++i QG+kE +f + l+++lrk T280394_3 816 LTSVIEGVRRIRKKSMNYSMMSTITQGKKENPSAFLEQLQETLRKY 861 566788999*********9************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 858 (0.0526187); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.58u 0.41s 00:00:01.99 Elapsed: 00:00:00.87 # Mc/sec: 8671.27 // Query: T251558_1 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.62 # Mc/sec: 11244.91 // Query: T251558_2 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 12020.42 // Query: T251558_3 [L=2436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 9815.47 // Query: T152037_1 [L=1554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 7535.14 // Query: T152037_2 [L=1553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 7052.17 // Query: T152037_3 [L=1553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.60 # Mc/sec: 7404.78 // Query: T369896_1 [L=3163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.72 # Mc/sec: 12567.79 // Query: T369896_2 [L=3163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 602 (0.0369189); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.73 # Mc/sec: 12395.62 // Query: T369896_3 [L=3163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 589 (0.0361217); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.79 # Mc/sec: 11454.18 // Query: T156197_1 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.72 # Mc/sec: 9182.47 // Query: T156197_2 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 8586.21 // Query: T156197_3 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.72 # Mc/sec: 9182.47 // Query: T381519_1 [L=2965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.032 14.3 0.0 0.054 13.6 0.0 1.3 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 3.3e-06 0.054 18 53 .. 2296 2331 .. 2291 2335 .. 0.89 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 3.3e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381519_1 2296 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 2331 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 12293.28 // Query: T381519_2 [L=2965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 15147.07 // Query: T381519_3 [L=2964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.54 # Mc/sec: 15702.78 // Query: T156307_1 [L=2467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 686 (0.0420704); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.54 # Mc/sec: 13069.75 // Query: T156307_2 [L=2467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.53 # Mc/sec: 13316.35 // Query: T156307_3 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 573 (0.0351404); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.74 # Mc/sec: 9533.52 // Query: T316430_1 [L=2683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.65 # Mc/sec: 11808.63 // Query: T316430_2 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 10806.68 // Query: T316430_3 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.75 # Mc/sec: 10230.33 // Query: T264571_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 2207.81 // Query: T264571_2 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.48 # Mc/sec: 2109.86 // Query: T264571_3 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 1607.51 // Query: T159802_1 [L=3863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0061 16.0 0.0 0.01 15.2 0.0 1.3 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.08 13.1 0.0 0.15 12.2 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 1.3e-06 0.01 138 181 .. 1742 1785 .. 1735 1785 .. 0.94 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 1.3e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa +i+ T159802_1 1742 KNPAPFMARLAATLRRFTALDPKRSKGRLILNIHFITQSALNIK 1785 689*************************************9996 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 1.9e-05 0.15 77 100 .. 2019 2042 .. 2017 2043 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.9e-05 EEESTTSSSEEE-HHHHCCCT-EE CS RVP 77 plilpelpvnllGrdlLqklgvrL 100 +l++p++pv+llGrd L+kl + L T159802_1 2019 LLVIPTCPVPLLGRDTLTKLSASL 2042 6899****************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.68u 0.44s 00:00:02.12 Elapsed: 00:00:00.78 # Mc/sec: 14168.44 // Query: T159802_2 [L=3862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.91 # Mc/sec: 12141.24 // Query: T159802_3 [L=3862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-05 24.6 3.9 4.4e-05 23.2 3.9 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.12 11.8 0.0 0.2 11.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 3.9 5.3e-09 4.4e-05 2 18 .] 1861 1877 .. 1860 1877 .. 0.94 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 5.3e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T159802_3 1861 ACYKCQKSGHQAKECPQ 1877 7***************7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 2.4e-05 0.2 69 100 .. 2184 2215 .. 2170 2242 .. 0.79 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 2.4e-05 -EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 69 klllklDlkkaFdsvpleellrkltafkvptk 100 +++ lDlk aF+++pl+ +++l+af+ ++ T159802_3 2184 IHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP 2215 68899**********************98766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 490 (0.0300503); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.69u 0.40s 00:00:02.09 Elapsed: 00:00:00.79 # Mc/sec: 13985.48 // Query: T226502_1 [L=8158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-12 47.6 0.0 1.8e-12 47.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.1 0.0 1.1e-16 1.8e-12 121 210 .. 812 901 .. 807 902 .. 0.95 Alignments for each domain: == domain 1 score: 47.1 bits; conditional E-value: 1.1e-16 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +p n kvkev++gk+e+pa f l+ea r+yt p++pe +a + + f+ qs++dir+ lq+ + +k ++ a kvyn r+ T226502_1 812 VKPVNYDKVKEVTRGKDENPALFQGLLVEALRKYTNAGPDTPEGQALLGIHFLIQSSPDIRRNLQKAAMGPSSPMKRRLNIAFKVYNNRD 901 68****************************************************************999999999999999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.70u 0.48s 00:00:03.18 Elapsed: 00:00:00.96 # Mc/sec: 24311.09 // Query: T226502_2 [L=8157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.28u 0.41s 00:00:02.69 Elapsed: 00:00:00.89 # Mc/sec: 26219.99 // Query: T226502_3 [L=8157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.53s 00:00:02.90 Elapsed: 00:00:00.86 # Mc/sec: 27134.64 // Query: T222340_1 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 12207.51 // Query: T222340_2 [L=3114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 424 (0.0260027); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.72 # Mc/sec: 12373.09 // Query: T222340_3 [L=3114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:00.85 # Mc/sec: 10480.73 // Query: T238545_1 [L=2669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.84 # Mc/sec: 9089.95 // Query: T238545_2 [L=2669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.73 # Mc/sec: 10459.66 // Query: T238545_3 [L=2668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.71 # Mc/sec: 10750.27 // Query: T230921_1 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.77 # Mc/sec: 4436.14 // Query: T230921_2 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 5599.72 // Query: T230921_3 [L=1193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.69 # Mc/sec: 4946.33 // Query: T291743_1 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 9959.50 // Query: T291743_2 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0083 16.0 0.2 0.033 14.0 0.2 2.1 1 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF Domain annotation for each model (and alignments): >> DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.2 2e-06 0.033 11 55 .. 2333 2377 .. 2327 2381 .. 0.89 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2e-06 DUF2116 11 kaIpldesfCsekCqeeyekkrkkvarsqqilfgililllavvlv 55 + Ip+ +s+ C +e++r+ ++++ i+f+i+i++ +++ + T291743_2 2333 NRIPPADSLMHFSCVRSWESRRRSTIQTRGIVFLIVIIVSLIYSF 2377 569999999999**************************9888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 10374.48 // Query: T291743_3 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.83 # Mc/sec: 8996.10 // Query: T090910_1 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.71 # Mc/sec: 3646.55 // Query: T090910_2 [L=904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.75 # Mc/sec: 3448.25 // Query: T090910_3 [L=904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.34 10.8 2.7 0.24 11.3 0.2 2.0 2 Antimicrobial_9 Ponericin L family Domain annotation for each model (and alignments): >> Antimicrobial_9 Ponericin L family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.2 1.5e-05 0.24 7 19 .. 241 253 .. 238 254 .. 0.92 2 ? -2.4 0.2 0.28 4.5e+03 7 12 .. 295 300 .. 295 301 .. 0.93 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.5e-05 Antimicrobial_9 7 TKiKGAGKAVLGK 19 TK +GAGK VLGK T090910_3 241 TKPRGAGKLVLGK 253 999*********9 PP == domain 2 score: -2.4 bits; conditional E-value: 0.28 Antimicrobial_9 7 TKiKGA 12 TK+ GA T090910_3 295 TKMEGA 300 9****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.61 # Mc/sec: 4239.66 // Query: T235987_1 [L=4177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1174 (0.071998); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.48s 00:00:02.69 Elapsed: 00:00:00.96 # Mc/sec: 12447.59 // Query: T235987_2 [L=4177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 886 (0.0543358); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.38s 00:00:02.29 Elapsed: 00:00:00.84 # Mc/sec: 14225.82 // Query: T235987_3 [L=4176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 652 (0.0399853); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.87 # Mc/sec: 13731.98 // Query: T381756_1 [L=180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 70 (0.0042929); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 858.25 // Query: T381756_2 [L=180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-06 28.6 0.1 2.4e-06 28.1 0.1 1.2 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.1 1.5e-10 2.4e-06 34 99 .. 60 124 .. 45 133 .. 0.90 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 1.5e-10 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381756_2 60 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 124 579***********************************************99987.7777777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 817.38 // Query: T381756_3 [L=179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.62 # Mc/sec: 825.95 // Query: T212314_1 [L=1438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7479.77 // Query: T212314_2 [L=1438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 5876.96 // Query: T212314_3 [L=1437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 6967.82 // Query: T337206_1 [L=2259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.18 11.6 25.8 60 3.5 0.0 10.1 13 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.076 1.2e+03 9 17 .. 1038 1046 .. 1034 1047 .. 0.88 2 ? -3.1 0.0 0.42 6.9e+03 9 17 .. 1057 1065 .. 1056 1065 .. 0.86 3 ? 2.7 0.0 0.0067 1.1e+02 1 17 [. 1068 1084 .. 1068 1085 .. 0.87 4 ? 3.5 0.0 0.0037 60 1 17 [. 1106 1122 .. 1106 1123 .. 0.89 5 ? 3.5 0.0 0.0037 60 1 17 [. 1125 1141 .. 1125 1142 .. 0.89 6 ? 3.5 0.0 0.0037 60 1 17 [. 1163 1179 .. 1163 1180 .. 0.89 7 ? -2.5 0.1 0.29 4.8e+03 9 15 .. 1190 1196 .. 1189 1197 .. 0.89 8 ? -2.5 0.0 0.28 4.6e+03 9 15 .. 1227 1233 .. 1225 1234 .. 0.89 9 ? 3.5 0.0 0.0037 60 1 17 [. 1238 1254 .. 1238 1255 .. 0.89 10 ? 3.5 0.0 0.0037 60 1 17 [. 1276 1292 .. 1276 1293 .. 0.89 11 ? -2.5 0.1 0.29 4.8e+03 9 15 .. 1303 1309 .. 1302 1310 .. 0.89 12 ? -1.2 0.0 0.11 1.8e+03 1 15 [. 1350 1364 .. 1350 1365 .. 0.84 13 ? -2.5 0.1 0.29 4.8e+03 9 15 .. 1376 1382 .. 1375 1383 .. 0.89 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.076 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337206_1 1038 VCPGVESSA 1046 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.42 Ectatomin 9 vCPTlksmA 17 CP ++s A T337206_1 1057 LCPGVESSA 1065 6*****976 PP == domain 3 score: 2.7 bits; conditional E-value: 0.0067 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337206_1 1068 WSHLPWSRVCPGVESSA 1084 77778999******977 PP == domain 4 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_1 1106 WSRLPWSGVCPGVESSA 1122 788889********977 PP == domain 5 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_1 1125 WSRLPWSGVCPGVESSA 1141 788889********977 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_1 1163 WSRLPWSGVCPGVESSA 1179 788889********977 PP == domain 7 score: -2.5 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337206_1 1190 VCPGVES 1196 9****98 PP == domain 8 score: -2.5 bits; conditional E-value: 0.28 Ectatomin 9 vCPTlks 15 vCP ++s T337206_1 1227 VCPGVES 1233 9****98 PP == domain 9 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_1 1238 WSRLPWSGVCPGVESSA 1254 788889********977 PP == domain 10 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_1 1276 WSRLPWSGVCPGVESSA 1292 788889********977 PP == domain 11 score: -2.5 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337206_1 1303 VCPGVES 1309 9****98 PP == domain 12 score: -1.2 bits; conditional E-value: 0.11 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP +s T337206_1 1350 WSRLPWSGVCPGAES 1364 788889*****8876 PP == domain 13 score: -2.5 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337206_1 1376 VCPGVES 1382 9****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.71 # Mc/sec: 9102.27 // Query: T337206_2 [L=2259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 13.9 32.6 57 3.6 0.0 12.9 15 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.096 1.6e+03 9 17 .. 993 1001 .. 992 1002 .. 0.89 2 ? -3.1 0.0 0.42 6.9e+03 9 17 .. 1031 1039 .. 1030 1039 .. 0.86 3 ? 1.4 0.0 0.017 2.8e+02 1 17 [. 1042 1058 .. 1042 1059 .. 0.88 4 ? 3.2 0.0 0.0048 78 1 17 [. 1080 1096 .. 1080 1097 .. 0.87 5 ? -2.5 0.1 0.29 4.8e+03 9 15 .. 1108 1114 .. 1107 1115 .. 0.89 6 ? 2.0 0.1 0.011 1.8e+02 1 15 [. 1137 1151 .. 1137 1153 .. 0.89 7 ? 3.2 0.0 0.0048 78 1 17 [. 1175 1191 .. 1175 1192 .. 0.87 8 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1198 1207 .. 1194 1209 .. 0.88 9 ? 3.6 0.0 0.0035 57 1 17 [. 1212 1228 .. 1212 1230 .. 0.89 10 ? 1.7 0.1 0.014 2.3e+02 1 15 [. 1250 1264 .. 1250 1266 .. 0.87 11 ? 3.2 0.0 0.0048 78 1 17 [. 1288 1304 .. 1288 1305 .. 0.87 12 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1311 1320 .. 1307 1322 .. 0.88 13 ? 3.2 0.0 0.0048 78 1 17 [. 1325 1341 .. 1325 1342 .. 0.87 14 ? 1.1 0.0 0.021 3.4e+02 6 17 .. 1366 1377 .. 1365 1378 .. 0.89 15 ? -2.3 0.0 0.25 4e+03 6 14 .. 1384 1392 .. 1384 1394 .. 0.85 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.096 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337206_2 993 VCPGVESSA 1001 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.42 Ectatomin 9 vCPTlksmA 17 CP ++s A T337206_2 1031 LCPGVESSA 1039 6*****976 PP == domain 3 score: 1.4 bits; conditional E-value: 0.017 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_2 1042 WSRLPWSRVCPGMESSA 1058 7888899*******977 PP == domain 4 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337206_2 1080 WSHLPWSGVCPGVESSA 1096 7777899*******977 PP == domain 5 score: -2.5 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337206_2 1108 VCPGVES 1114 9****98 PP == domain 6 score: 2.0 bits; conditional E-value: 0.011 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP ++s T337206_2 1137 WSRLPWSGVCPGVES 1151 788889*******98 PP == domain 7 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337206_2 1175 WSHLPWSGVCPGVESSA 1191 7777899*******977 PP == domain 8 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337206_2 1198 WSGVCPGVES 1207 889*****98 PP == domain 9 score: 3.6 bits; conditional E-value: 0.0035 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337206_2 1212 WSRLPWSGVCPGVESSA 1228 788889********987 PP == domain 10 score: 1.7 bits; conditional E-value: 0.014 Ectatomin 1 iskkvklTvCPTlks 15 +s + vCP ++s T337206_2 1250 WSHLPWSGVCPGVES 1264 7777899******98 PP == domain 11 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337206_2 1288 WSHLPWSGVCPGVESSA 1304 7777899*******977 PP == domain 12 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337206_2 1311 WSGVCPGVES 1320 889*****98 PP == domain 13 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337206_2 1325 WSHLPWSGVCPGVESSA 1341 7777899*******977 PP == domain 14 score: 1.1 bits; conditional E-value: 0.021 Ectatomin 6 klTvCPTlksmA 17 + vCP ++s A T337206_2 1366 WSGVCPGVESSA 1377 788******977 PP == domain 15 score: -2.3 bits; conditional E-value: 0.25 Ectatomin 6 klTvCPTlk 14 + vCP ++ T337206_2 1384 WSGVCPGVE 1392 788***998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.77 # Mc/sec: 8393.01 // Query: T337206_3 [L=2258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.79 # Mc/sec: 8176.90 // Query: T234774_1 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.46s 00:00:01.54 Elapsed: 00:00:00.81 # Mc/sec: 5725.19 // Query: T234774_2 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 473 (0.0290077); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.77 # Mc/sec: 6022.60 // Query: T234774_3 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.43s 00:00:01.75 Elapsed: 00:00:00.79 # Mc/sec: 5870.13 // Query: T221585_1 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 10031.07 // Query: T221585_2 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 11081.95 // Query: T221585_3 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 11081.95 // Query: T005281_1 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 5556.46 // Query: T005281_2 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 5717.51 // Query: T005281_3 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 5479.28 // Query: T071906_1 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 8546.73 // Query: T071906_2 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.38s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 8663.08 // Query: T071906_3 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.80 # Mc/sec: 7688.48 // Query: T295983_1 [L=2679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 23.6 0.0 3.8e-05 23.0 0.0 1.1 1 Serpin Serpin (serine protease inhibitor) Domain annotation for each model (and alignments): >> Serpin Serpin (serine protease inhibitor) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.0 2.3e-09 3.8e-05 315 366 .. 1179 1230 .. 1178 1233 .. 0.86 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 2.3e-09 EEEESSSEEEEEEEEECCTTCS-SSEEEEEECSEEEEEEEETTTTEEEEEEE CS Serpin 315 fievnEeGteaaaatvatllskksspvefkvdrPFlflireektgliLFlGk 366 f+ev Ee t+aa a+ +t ++++s+ +f++ +P lf++++++t+++LF+G+ T295983_1 1179 FMEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGR 1230 789************5555555666668***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 10084.43 // Query: T295983_2 [L=2678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.9 5.1 60 3.7 0.0 4.2 5 DUF2161 Putative PD-(D/E)XK phosphodiesterase (DUF2161) Domain annotation for each model (and alignments): >> DUF2161 Putative PD-(D/E)XK phosphodiesterase (DUF2161) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.4 0.012 2e+02 9 49 .. 932 972 .. 930 978 .. 0.89 2 ? -3.4 0.0 0.57 9.4e+03 54 70 .. 2035 2051 .. 2028 2054 .. 0.84 3 ? 3.7 0.0 0.0037 60 54 72 .. 2073 2091 .. 2067 2095 .. 0.87 4 ? -1.3 0.0 0.13 2e+03 55 73 .. 2149 2167 .. 2147 2169 .. 0.89 5 ? 1.3 0.0 0.019 3.2e+02 55 85 .. 2237 2267 .. 2234 2275 .. 0.86 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.012 DUF2161 9 evevlvepeekaprknkkkrsrllkEferregdpnvGGstr 49 e+ev+v+p++ ++ ++ k+ + l + ++++ +++ GG+ + T295983_2 932 EAEVAVSPDPATALQAGKQSKPLAQKKKKKKYRKQRGGERK 972 689*******9999999*********************765 PP == domain 2 score: -3.4 bits; conditional E-value: 0.57 DUF2161 54 TaYreqalriaalLaee 70 T Yre++l+ +L++e T295983_2 2035 TSYRESVLHRVNMLHTE 2051 99******999999876 PP == domain 3 score: 3.7 bits; conditional E-value: 0.0037 DUF2161 54 TaYreqalriaalLaeege 72 T Yre+al++ +L++e++ T295983_2 2073 TSYRESALHCVNMLHTEDQ 2091 99************98754 PP == domain 4 score: -1.3 bits; conditional E-value: 0.13 DUF2161 55 aYreqalriaalLaeegel 73 Yr +al++ L++eg+ T295983_2 2149 SYRRSALHCVNTLHTEGQH 2167 6*************99876 PP == domain 5 score: 1.3 bits; conditional E-value: 0.019 DUF2161 55 aYreqalriaalLaeegelspaelkkatgee 85 Yre+al+ +L++eg +s+a +++a + e T295983_2 2237 SYRESALHRVNMLHTEGRVSTALCEHASCRE 2267 6*******************99988877654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.69 # Mc/sec: 11103.34 // Query: T295983_3 [L=2678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.88 # Mc/sec: 8706.03 // Query: T369011_1 [L=1060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.75 # Mc/sec: 4043.31 // Query: T369011_2 [L=1060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5513.60 // Query: T369011_3 [L=1060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 4665.35 // Query: T051582_1 [L=4567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.39s 00:00:02.08 Elapsed: 00:00:00.80 # Mc/sec: 16331.76 // Query: T051582_2 [L=4566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.76 # Mc/sec: 17187.57 // Query: T051582_3 [L=4566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.36s 00:00:01.94 Elapsed: 00:00:00.66 # Mc/sec: 19791.74 // Query: T022837_1 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 812 (0.0497976); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.64 # Mc/sec: 5234.42 // Query: T022837_2 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 5317.51 // Query: T022837_3 [L=1170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 949 (0.0581994); expected 326.1 (0.02) Passed bias filter: 547 (0.0335459); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.80 # Mc/sec: 4183.96 // Query: T124376_1 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.60 # Mc/sec: 2469.85 // Query: T124376_2 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 2550.08 // Query: T124376_3 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.67 # Mc/sec: 2207.54 // Query: T344941_1 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.86 # Mc/sec: 9231.17 // Query: T344941_2 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-15 55.6 0.0 6.2e-14 51.9 0.0 2.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 2.4e-08 34.1 0.2 4.1e-08 33.3 0.2 1.4 1 rve Integrase core domain 0.0014 18.2 0.3 0.0026 17.3 0.3 1.3 1 Gag_MA Matrix protein (MA), p15 ------ inclusion threshold ------ 0.055 13.5 1.1 0.1 12.7 1.1 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.9 0.0 1.5e-17 6.2e-14 1 207 [. 90 245 .. 90 267 .. 0.86 Alignments for each domain: == domain 1 score: 51.9 bits; conditional E-value: 1.5e-17 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE.T. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv.pt 99 ++K++ gs+R+ vdy +ln+++ p + l+ + ++ ++++ +Dl +aF+s+p+++ +k +af+ T344941_2 90 VQKTD-GSWRMT----VDYHKLNQVVTL---------TAAAVPDVVSL---LE--------QTNTSPGTWYAAIDLTNAFFSIPVHKAHQKQFAFSW*G- 163 57999.*****5....5***********.........44444444444...11........1245778**************************77555. PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 ++++ ++lpq + SP+l+ ++++ l++++ +++tl++Y+DDi+++ +s++e+ + l+ + ++l g +in T344941_2 164 -------------------------RQFTFTVLPQAYIDSPALCLNLIQRDLNRFSL-PQDITLVHYIDDIMLIGSSEQEVANTLDLLGRHLHARGWEIN 237 .........................6799***************9999999999998.59**************************************** PP GGG-EEE. CS RVT_1 200 peKtklvl 207 p+K++ ++ T344941_2 238 PTKIQGTS 245 *****994 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 0.2 1e-11 4.1e-08 8 106 .. 1744 1839 .. 1744 1851 .. 0.89 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 1e-11 rve 8 wqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqd 104 wqvD+ + p+++++ ++l+ id +s++ ++++ + +a+t+i+ l + + + + p + sD+++ + +k++++++ gi++s++ p++p+ T344941_2 1744 WQVDYIgSL--PSWKEWRFVLTGIDSYSGYGFTYPAHNA-SAKTTIHGLTECLIHHHDI-PHSIASDQATYFMAKEVQQWAHVDGIHWSYHVPHHPEA 1837 999*99444..588889**********************.7777777777777777776.************************************98 PP rve 105 nG 106 G T344941_2 1838 AG 1839 76 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.3 6.3e-07 0.0026 6 92 .. 918 999 .. 915 1010 .. 0.75 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 6.3e-07 -HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS....--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS- CS Gag_MA 6 tPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvg....WPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedP 92 tPL +l+h+ + + ++ k+li lC+ Wp ++ + WP+eGt +l++i +++ fs +e pY+ ++ +L +P T344941_2 918 TPLECILNHWDCFDPQ------NLEEKHLIALCTKVWPNYDLQeglaWPQEGTIHLDTIWQLEL--FSI-CEDRWSEAPYVQAFYTLQGNP 999 7888888888765543......346799**********996533333*************9974..444.445566778888888887776 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 1.1 2.5e-05 0.1 2 137 .. 506 645 .. 505 650 .. 0.73 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 2.5e-05 .SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHH.HHHHHHHH.TT.SCSEEE.EEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 2 kavvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraEL.sAvieaLk.alksdekvn.iytDSkYvvkgitqwvhrwkknawkttseqkpv 98 k v++t Gs++ ++++ a + + ++ + +e ++ + aE+ v+ +++ a k++ + +y DS vv+ + w +wkk++wk + ++ + T344941_2 506 KTKVWFTNGSARYAGTTRKWTAAALQPLYKTSLKDSSEGKSSQWAEF*A-VHLVVHfAWKEKLPDV*LYADSWAVVNDLSGWSGTWKKHDWKISYKK--I 602 56799*******9999998888554454454445555799*****9553.5555554644444445*************************887777..6 PP TT....HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHH CS RNase_H 99 kn....kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrl 137 +l e k +++ ++hv +H+ + N+++D++ T344941_2 603 WGrgm*MDLSE----WSKTVQIFVSHVSAHQQVtsaeEDFNNQVDKI 645 66355555555....5599***********98855543457777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.23u 0.41s 00:00:01.64 Elapsed: 00:00:00.81 # Mc/sec: 9800.99 // Query: T344941_3 [L=2774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-20 71.4 0.1 9.9e-20 70.8 0.1 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.8 0.1 6.1e-24 9.9e-20 4 210 .. 1095 1306 .. 1092 1307 .. 0.86 Alignments for each domain: == domain 1 score: 70.8 bits; conditional E-value: 6.1e-24 Gag_p30 4 pfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrpt......qlpnevdeafpltrpdwd 95 pfs dl + k + fs++p + + + + +w d ll+ l e++ l a + e + + ea p++ p+wd T344941_3 1095 PFSLQDLKQIKGDLGKFSDNPDRYIEAFQNFSQIFELSWRDIMLLLNQTLMDTEKEAALQ-AAERFGDELCLTYsireggKYYPTGREAVPVNDPKWD 1191 9*******************************9**********99976666667777554.4444433333333000001334456799********* PP Gag_p30 96 yetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqea 193 + + + ++ ++ gl ++ +p n +k+ ++ qg +e+p+af erl+ea ++t p++ e + + fi+q+a+dir+klq+ + T344941_3 1192 PNDEVEDWKKRHFQVCIMEGLCTTRTKPLNYTKLPRIDQGFDENPTAFPERLTEALVKHTFLSPDSVEGQLILKDKFITQAAPDIRRKLQKWTLGPDS 1289 9998888888999999*****************************************************************************99*** PP Gag_p30 194 tlkdlvkeaekvynkre 210 tl+dl+k a v++ re T344941_3 1290 TLEDLLKVATSVFYNRE 1306 **************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 10871.15 // Query: T202697_1 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 457 (0.0280265); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 8558.31 // Query: T202697_2 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-10 39.7 0.3 6.8e-10 39.0 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.0 0.3 4.2e-14 6.8e-10 33 96 .. 1654 1718 .. 1649 1724 .. 0.95 Alignments for each domain: == domain 1 score: 39.0 bits; conditional E-value: 4.2e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202697_2 1654 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1718 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 9069.26 // Query: T202697_3 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-37 127.5 0.2 5.9e-37 126.9 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.9 0.2 3.6e-41 5.9e-37 1 168 [. 1255 1419 .. 1255 1420 .. 0.87 Alignments for each domain: == domain 1 score: 126.9 bits; conditional E-value: 3.6e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202697_3 1255 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1348 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202697_3 1349 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1419 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.74 # Mc/sec: 8211.36 // Query: T370873_1 [L=968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-07 28.2 0.5 3.2e-06 26.0 0.5 1.8 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 0.5 2e-10 3.2e-06 305 561 .] 519 779 .. 500 779 .. 0.73 Alignments for each domain: == domain 1 score: 26.0 bits; conditional E-value: 2e-10 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX...XXXXXX CS TLV_coat 305 gqglligkvPkthqalcnktektskgseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge..yiyaidepatRvkRepvaltlal 402 q+ ++k Pk + ++ + + +ap+g +++ ++ +t+l+++++++Cv ++ P + + + + + a+ kR +a+ T370873_1 519 TQSTPFSKFPKLQTVWTH-----PESHRDWTAPTGLYWIYGHR----AYTKLPDQWAGSCVIDTIKPSFFPLPIKtgELLGFPVYASHEKR-SIAV--GN 606 445556666666666666.....333446889******97754....47******************998777776757777777788888.3333..22 PP XXXXX..........XXXXXXXXXXXXX.XX...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S------ CS TLV_coat 403 lLgGL..........giaagvgtGttgl.vs...tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFya 487 g a+ ++ G g + ++q+ +Lqa le ++ +++ l ++ t++ + + QNR D L + eGG+C + +CC + T370873_1 607 WKDDEwptqriihyyGPATWTQDGSWGYwIPiymINQIIRLQAVLEIITNKTVRALTILARQETQMRNSIYQNRLAFDYLLAAEGGICGKFNlSNCCLHI 706 221111222233555999999****999877778999***************************************************9998568***** PP --HH.....HHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 488 dksg.....ivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 d g ivrd + kL + q ++ + f ++ + + t++ +g+++++ Ll Pc+l L+q+ik T370873_1 707 DYQGqvvedIVRD-MTKLAHVPMQVWHGFDPGAM-FGKWFPVLGGFKTVI---IGVIIVIGTCLL-LPCLLTVLLQMIK 779 *876422224444.67777777777777776666.788888888888888...666665555444.4*********997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 4195.88 // Query: T370873_2 [L=968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4195.88 // Query: T370873_3 [L=967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 4322.54 // Query: T359282_1 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-28 99.8 0.0 1.3e-28 99.5 0.0 1.1 1 FTHFS Formate--tetrahydrofolate ligase Domain annotation for each model (and alignments): >> FTHFS Formate--tetrahydrofolate ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 99.5 0.0 7.7e-33 1.3e-28 441 529 .. 89 177 .. 86 178 .. 0.97 Alignments for each domain: == domain 1 score: 99.5 bits; conditional E-value: 7.7e-33 S-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-B--B--SSSSSSSTT--SS--S-EEEEEEEEEETTTTEEEEESST-- CS FTHFS 441 lsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapkgftltvrevrlsaGagfivalageim 529 l+i +ki+tia+ +Yga+++el +ea+ k++++++qg+++lp+c+aKt +Sls++p++kg+p++f l++++vr+s+Gagfi++l+g++ T359282_1 89 LPIVDKIRTIAQAVYGAKDIELCPEAQVKIDRYTQQGFGNLPICMAKTDLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTVH 177 6899**********************************************************************************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 5828.41 // Query: T359282_2 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 6732.82 // Query: T359282_3 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6298.44 // Query: T352941_1 [L=4333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:00.70 # Mc/sec: 17708.54 // Query: T352941_2 [L=4332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 17961.04 // Query: T352941_3 [L=4332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.35s 00:00:01.88 Elapsed: 00:00:00.67 # Mc/sec: 18497.19 // Query: T174062_1 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 6716.99 // Query: T174062_2 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.045 14.2 0.0 0.54 10.9 0.0 2.7 3 Ank_3 Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 1 1.6e+04 14 26 .. 77 87 .. 75 88 .. 0.76 2 ? -0.6 0.0 0.18 2.9e+03 4 26 .. 109 132 .. 107 134 .. 0.78 3 ? 10.9 0.0 3.3e-05 0.54 1 30 [. 201 229 .. 201 230 .. 0.95 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 1 Ank_3 14 rpeivkfLlenlg 26 +pe ++fLl +g T174062_2 77 SPE-IHFLLA-HG 87 677.99***9.55 PP == domain 2 score: -0.6 bits; conditional E-value: 0.18 Ank_3 4 tpLhlAarsgrp..eivkfLlenlg 26 pL++ + +++ ++++++ + +g T174062_2 109 HPLFQLCGLNDLgsTVLRWIAR-HG 132 5889999999997669999988.56 PP == domain 3 score: 10.9 bits; conditional E-value: 3.3e-05 Ank_3 1 nGetpLhlAarsgrpeivkfLlenlgadvn 30 +G+t+L+l a+ g+ + +++Ll +ga +n T174062_2 201 EGQTALFLSALLGHGSAMQLLLA-FGAKPN 229 59*********************.***999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 5200.25 // Query: T174062_3 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 5285.50 // Query: T242265_1 [L=1839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 7307.04 // Query: T242265_2 [L=1838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 8763.68 // Query: T242265_3 [L=1838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 9224.92 // Query: T294303_1 [L=3442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:00.64 # Mc/sec: 15385.90 // Query: T294303_2 [L=3442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1196 (0.0733472); expected 326.1 (0.02) Passed bias filter: 626 (0.0383908); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.41s 00:00:02.86 Elapsed: 00:00:00.84 # Mc/sec: 11722.59 // Query: T294303_3 [L=3441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1102 (0.0675825); expected 326.1 (0.02) Passed bias filter: 593 (0.036367); expected 326.1 (0.02) Passed Vit filter: 133 (0.00815651); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.42u 0.39s 00:00:02.81 Elapsed: 00:00:00.80 # Mc/sec: 12305.15 // Query: T368596_1 [L=9684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 867 (0.0531706); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.37u 0.50s 00:00:03.87 Elapsed: 00:00:01.06 # Mc/sec: 26136.11 // Query: T368596_2 [L=9684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 828 (0.0507789); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.45u 0.56s 00:00:04.01 Elapsed: 00:00:01.10 # Mc/sec: 25185.71 // Query: T368596_3 [L=9684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 770 (0.0472219); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.46s 00:00:02.68 Elapsed: 00:00:00.71 # Mc/sec: 39020.11 // Query: T295126_1 [L=2926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.53 # Mc/sec: 15793.94 // Query: T295126_2 [L=2926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.62 # Mc/sec: 13501.27 // Query: T295126_3 [L=2926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.66 # Mc/sec: 12683.01 // Query: T381517_1 [L=4353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.78 # Mc/sec: 15965.63 // Query: T381517_2 [L=4352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.92 # Mc/sec: 13532.97 // Query: T381517_3 [L=4352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:00.79 # Mc/sec: 15759.91 // Query: T238527_1 [L=817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.15 10.1 9.5 0.21 9.6 9.5 1.1 1 SSP160 Special lobe-specific silk protein SSP160 8.9 6.2 16.0 23 4.8 16.0 1.6 1 DUF3439 Domain of unknown function (DUF3439) Domain annotation for each model (and alignments): >> SSP160 Special lobe-specific silk protein SSP160 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 9.5 2.6e-05 0.21 676 711 .. 728 763 .. 705 770 .. 0.60 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 2.6e-05 SSP160 676 eattttssttttttttttaaptttttkaanapftyp 711 +a+ ++tttttttttt++ ttt a f y T238527_1 728 DASEPKTTTTTTTTTTTTTTTTTTLCFAPSISFYYS 763 444444444444444444444555555555555555 PP >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 16.0 0.0028 23 47 71 .. 734 758 .. 727 768 .. 0.74 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0028 DUF3439 47 ttttttttttttmpttttlptttkm 71 tttttttttttt ttttl + + T238527_1 734 TTTTTTTTTTTTTTTTTTLCFAPSI 758 6777777778888888898766555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.80 # Mc/sec: 2921.62 // Query: T238527_2 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.7 2.3 0.032 14.1 2.3 1.1 1 Suf Suppressor of forked protein (Suf) 0.26 11.5 3.2 3.2 7.9 1.3 2.3 2 CCDC117 Coiled-coil domain-containing protein 117 1.1 8.0 6.7 1.6 7.5 6.7 1.1 1 DUF2722 Protein of unknown function (DUF2722) 1.3 8.4 11.0 2.7 7.4 11.0 1.4 1 Spt20 Spt20 family 6.7 6.8 13.9 0.23 11.4 7.5 1.8 2 SUIM_assoc Unstructured region C-term to UIM in Ataxin3 Domain annotation for each model (and alignments): >> Suf Suppressor of forked protein (Suf) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 2.3 9.9e-06 0.032 224 272 .. 716 764 .. 680 766 .. 0.85 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 9.9e-06 Suf 224 gaagrrleqqrksessksaeaasksqkalqqqpaplprsivallsvLPs 272 + +++ +++ +++ ++++++++++q+++qqq++pl ++ +ls++P T238527_2 716 TYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQPLSALLLPFLSTIPV 764 45667778888999**********************************6 PP >> CCDC117 Coiled-coil domain-containing protein 117 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.038 1.2e+02 51 95 .. 630 670 .. 627 698 .. 0.67 2 ? 7.9 1.3 0.00097 3.2 61 106 .. 708 753 .. 700 763 .. 0.88 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.038 CCDC117 51 diltkkviesvsrssmELvlWkPleellsdklkdslqkkqrkqet 95 ++l++++ie + s E+ +Wk l ++l + s + q++ T238527_2 630 QLLPHEIIERLLLGSNEIKMWKWLCKPLRPMPSMSR----YCQDK 670 689******************987777654444433....33332 PP == domain 2 score: 7.9 bits; conditional E-value: 0.00097 CCDC117 61 vsrssmELvlWkPleellsdklkdslqkkqrkqetaarqaktpvas 106 s+ssm L Pl ++ + + q++q +q+++++q+++p+++ T238527_2 708 FSQSSMSLTYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQPLSA 753 6899***************999999999999999999999999876 PP >> DUF2722 Protein of unknown function (DUF2722) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 6.7 0.00048 1.6 8 43 .. 714 749 .. 708 765 .. 0.58 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00048 DUF2722 8 Slidksssseqvskqqqkkesskqgsqqeqksqqqq 43 Sl + s ++ + ++++++q++qq+q++qqqq T238527_2 714 SLTYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQ 749 555555555555555555555554444444433333 PP >> Spt20 Spt20 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 11.0 0.00084 2.7 106 124 .. 731 749 .. 708 760 .. 0.52 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00084 Spt20 106 dqkqsqqnqqqqqqqqqqq 124 +qkq+qq+qqqqqqqqqqq T238527_2 731 NQKQQQQQQQQQQQQQQQQ 749 2222222222222222222 PP >> SUIM_assoc Unstructured region C-term to UIM in Ataxin3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.4 2 6.6e+03 3 19 .. 130 146 .. 129 152 .. 0.60 2 ? 11.4 7.5 7.2e-05 0.23 29 48 .. 733 752 .. 699 755 .. 0.80 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 2 SUIM_assoc 3 sqdvPqTsgtqLtsEeL 19 +q v q + ++ sE+L T238527_2 130 PQSVSQETQSKTCSEQL 146 56666666666666655 PP == domain 2 score: 11.4 bits; conditional E-value: 7.2e-05 SUIM_assoc 29 Kqeqqqqqqqqqqdppgqls 48 Kq+qqqqqqqqqq++++ ls T238527_2 733 KQQQQQQQQQQQQQQQQPLS 752 55566666666666665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1110 (0.0680731); expected 326.1 (0.02) Passed bias filter: 659 (0.0404146); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.05u 0.44s 00:00:01.49 Elapsed: 00:00:00.74 # Mc/sec: 3154.64 // Query: T238527_3 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4577.33 // Query: T195965_1 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.41s 00:00:01.80 Elapsed: 00:00:00.78 # Mc/sec: 10409.02 // Query: T195965_2 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 12301.57 // Query: T195965_3 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.75 # Mc/sec: 10825.38 // Query: T316826_1 [L=2358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 9776.58 // Query: T316826_2 [L=2358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.68 # Mc/sec: 9920.35 // Query: T316826_3 [L=2358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.76 # Mc/sec: 8876.10 // Query: T000477_1 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 5848.35 // Query: T000477_2 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 5933.11 // Query: T000477_3 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 6105.95 // Query: T120034_1 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 7134.56 // Query: T120034_2 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 5826.56 // Query: T120034_3 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 4994.19 // Query: T051568_1 [L=3601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:00.77 # Mc/sec: 13379.02 // Query: T051568_2 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 14108.20 // Query: T051568_3 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.42s 00:00:01.77 Elapsed: 00:00:00.77 # Mc/sec: 13375.31 // Query: T316830_1 [L=7518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 490 (0.0300503); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.49u 0.50s 00:00:02.99 Elapsed: 00:00:00.89 # Mc/sec: 24165.98 // Query: T316830_2 [L=7517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 487 (0.0298663); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.63u 0.49s 00:00:03.12 Elapsed: 00:00:00.94 # Mc/sec: 22877.51 // Query: T316830_3 [L=7517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.51u 0.48s 00:00:02.99 Elapsed: 00:00:00.89 # Mc/sec: 24162.76 // Query: T227983_1 [L=6335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.43s 00:00:02.53 Elapsed: 00:00:00.87 # Mc/sec: 20831.45 // Query: T227983_2 [L=6335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.85 # Mc/sec: 21321.60 // Query: T227983_3 [L=6334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.77 # Mc/sec: 23533.11 // Query: T291134_1 [L=2678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.82 # Mc/sec: 9343.05 // Query: T291134_2 [L=2678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.62 # Mc/sec: 12356.94 // Query: T291134_3 [L=2677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-46 156.2 2.5 1.3e-45 155.5 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0008 19.2 1.0 0.0017 18.1 1.0 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.5 2.5 1.6e-49 1.3e-45 1 222 [] 2097 2353 .. 2097 2353 .. 0.92 Alignments for each domain: == domain 1 score: 155.5 bits; conditional E-value: 1.6e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291134_3 2097 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 2194 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291134_3 2195 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 2292 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291134_3 2293 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2353 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 1.0 2.1e-07 0.0017 25 48 .. 1176 1199 .. 1173 1202 .. 0.90 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 2.1e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291134_3 1176 LEKRLDKMLTRITSLEKNINDLMQ 1199 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 649 (0.0398013); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.70 # Mc/sec: 10940.63 // Query: T117562_1 [L=2114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.70 # Mc/sec: 8639.71 // Query: T117562_2 [L=2114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.70 # Mc/sec: 8639.71 // Query: T117562_3 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 8168.83 // Query: T346737_1 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-64 216.2 8.9 2e-57 194.6 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.6 5.4 1.2e-61 2e-57 179 299 .. 1081 1201 .. 1072 1209 .. 0.94 2 ! 23.0 0.1 1.8e-09 2.9e-05 340 367 .. 1244 1273 .. 1242 1274 .. 0.96 Alignments for each domain: == domain 1 score: 194.6 bits; conditional E-value: 1.2e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346737_1 1081 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1173 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346737_1 1174 GKVNHKWKPIRLTADLSAETLQARREWG 1201 ***************************8 PP == domain 2 score: 23.0 bits; conditional E-value: 1.8e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346737_1 1244 FVTTRPALQELLKEapNMERKNRYQPLQKH 1273 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 8598.84 // Query: T346737_2 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-35 121.3 1.9 6.7e-35 120.5 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 5.1e-14 51.8 14.6 2.7e-07 29.7 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.026 14.3 0.1 0.06 13.2 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.5 1.9 1.2e-38 6.7e-35 31 210 .. 1685 1877 .. 1676 1895 .. 0.93 Alignments for each domain: == domain 1 score: 120.5 bits; conditional E-value: 1.2e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346737_2 1685 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1782 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346737_2 1783 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 1877 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 2.9 4.9e-11 2.7e-07 6 83 .. 936 1021 .. 931 1033 .. 0.79 2 ! 27.6 3.9 2.1e-10 1.1e-06 145 182 .. 1047 1084 .. 1047 1088 .. 0.96 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 4.9e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346737_2 936 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 1021 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.6 bits; conditional E-value: 2.1e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346737_2 1047 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1084 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 1.1e-05 0.06 24 48 .. 1004 1028 .. 1002 1031 .. 0.91 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.1e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346737_2 1004 KLYQRLQELLSRIASLEKNVNDLME 1028 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1128 (0.069177); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 9404.98 // Query: T346737_3 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 8847.54 // Query: T099712_1 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.65 # Mc/sec: 2469.12 // Query: T099712_2 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 2762.18 // Query: T099712_3 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.65 # Mc/sec: 2464.72 // Query: T138144_1 [L=8328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1416 (0.0868392); expected 326.1 (0.02) Passed bias filter: 385 (0.0236109); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.98u 0.53s 00:00:05.51 Elapsed: 00:00:01.25 # Mc/sec: 19059.99 // Query: T138144_2 [L=8328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1308 (0.0802159); expected 326.1 (0.02) Passed bias filter: 386 (0.0236723); expected 326.1 (0.02) Passed Vit filter: 123 (0.00754324); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.82u 0.62s 00:00:05.44 Elapsed: 00:00:01.26 # Mc/sec: 18908.72 // Query: T138144_3 [L=8328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1187 (0.0727953); expected 326.1 (0.02) Passed bias filter: 283 (0.0173556); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.91u 0.52s 00:00:04.43 Elapsed: 00:00:01.10 # Mc/sec: 21659.08 // Query: T100040_1 [L=887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.084 12.4 0.1 0.17 11.4 0.1 1.5 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.1 1.1e-05 0.17 7 19 .. 623 635 .. 623 635 .. 0.93 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 1.1e-05 DUF3704 7 SFGYMPksgIAGS 19 S GY P++gIAGS T100040_1 623 SIGYVPRNGIAGS 635 66**********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 4531.35 // Query: T100040_2 [L=887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4531.35 // Query: T100040_3 [L=886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1401 (0.0859193); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 4446.83 // Query: T036339_1 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.77 # Mc/sec: 10785.70 // Query: T036339_2 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.65 # Mc/sec: 12776.91 // Query: T036339_3 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 11534.71 // Query: T063475_1 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 1795.42 // Query: T063475_2 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.52 # Mc/sec: 1997.08 // Query: T063475_3 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 1760.14 // Query: T215542_1 [L=3006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 7.4 8.7 6.5 6.4 8.7 1.5 1 IncA IncA protein Domain annotation for each model (and alignments): >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 8.7 0.0004 6.5 95 177 .. 1288 1364 .. 1282 1415 .. 0.76 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0004 IncA 95 eeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrlq 177 ++ q+++++++l+++lk+le++++ ++ + s ++++ +++ ++ke++ ++l++++++++ + e+ +r+ l+rl T215542_1 1288 HKRKQERTKINTLTSQLKELEKQEQTNS--KASRKQEITKIRAELKEIETQ-KTLQKINESRSGFFEKINKTDRS---LARLT 1364 78999***********************..999999999999999988766.44443444444433333333333...33333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1114 (0.0683184); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 11780.35 // Query: T215542_2 [L=3006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-117 391.5 11.5 5.2e-117 390.7 11.5 1.4 1 Transposase_22 L1 transposable element 4e-42 144.1 1.2 6.9e-42 143.3 1.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.00047 20.3 0.1 0.002 18.2 0.0 1.9 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 390.7 11.5 9.5e-121 5.2e-117 138 368 .] 726 958 .. 676 958 .. 0.92 Alignments for each domain: == domain 1 score: 390.7 bits; conditional E-value: 9.5e-121 ..XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 138 daslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 +s++s+ d++e+rvs ++d+i+ei+ e k+rekr+k++eqslq+iqd+vkrPnl liG++es+ e+++klen+l++ii+enfPnl++++n++iq T215542_2 726 CTSFNSQFDQVEQRVSVIDDQINEIKGEEKFREKRVKRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLQDIIQENFPNLARQVNIQIQ 820 46999****************************************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGe 327 ei+rtP+r++ +ra+srhii+r+tkv++k+k+l+ +rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Ge T215542_2 821 EIQRTPQRYSLRRAASRHIIIRFTKVEMKEKMLRPAREKGRVTHKGKPIRLTGDLSAETLQARREWGPIFNILKEKNFQPRITYPAKLSFISEGE 915 *********************************************************************************************** PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f dk++lrd+++trP+l++llke ++er+++yq+l++++ T215542_2 916 IKSFTDKQMLRDFVTTRPTLQELLKEalNMERNNQYQPLQNHA 958 *****************************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.3 1.2 1.3e-45 6.9e-42 5 209 .. 1510 1734 .. 1506 1761 .. 0.91 Alignments for each domain: == domain 1 score: 143.3 bits; conditional E-value: 1.3e-45 T.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 5 gpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 + +++Rpisl++vd+k++nk++a++++++++kl+ ++ + f pg + + ++ + ++++++ + k+++++++ +kaF++++ + ++l +++++ T215542_2 1510 T-ENFRPISLMNVDVKIINKILANQIQQHIKKLILHDKVSFIPGMQGWFNIcksiNIIHHINRTNDKNHVIISIGAEKAFNKIQQCFMPKTLSKLGID 1606 3.79**************************************************99999999999999****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHH CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqellea 186 +++i++++ ++++++ ++g++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ T215542_2 1607 GAYLKIIRAIFDKPTANIILSGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiq*gkEEVKLSLFADDMMVYLENpIVSAQNLLKL 1704 ***********************99*********************************99***************************6677******* PP HHHHHHHTT--BEGGG-EEE.......... CS RVT_1 187 veewlkesglkinpeKtklvlf.......s 209 ++++ k sg+kin +K++++l+ + T215542_2 1705 ISNFSKVSGYKINVQKSQAFLYtnkqtnrE 1734 ********************9855554440 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.49 2.7e+03 12 51 .. 762 816 .. 728 937 .. 0.63 2 ! 18.2 0.0 3.7e-07 0.002 6 87 .. 998 1143 .. 993 1232 .. 0.80 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.49 HHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...............E CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x RF Exo_endo_phos 12 aeksrrsaaladllkaydadvlglqEvdddelsrlplla...............d 51 ++++++ ++++d +k+ + ++g+ E d++++++l+ + + T215542_2 762 KRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLqdiiqenfpnlarqvN 816 3444455555555555566788877777666666655555444444444444441 PP == domain 2 score: 18.2 bits; conditional E-value: 3.7e-07 STCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........EEEEEEESSSTTSSEEEEEECSEEEEE........... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF Exo_endo_phos 6 ngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...........dadaskfgtgkgqggvavlsrfpltsl........... 77 ng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + +k++ gv++l++ + + + T215542_2 998 NG----LNARIKRHRLANWIKSQDPLVCCIQETHLMCRDTHRLKIkgwreiyqan*K--------QKKKAGVVILVSDETDFKptkdqkrqgrp 1079 45....555677899*****************9999887777777877777777773........56678888888888866667788888888 PP ...........................................EEEEEE-SS...........- CS ...........................................xxxxxxxxx...........x RF Exo_endo_phos 78 ...........................................vivlGDfNa...........r 87 i++GDfN+ r T215542_2 1080 lrngkeinatrranypkyicnntgaprfiqqvlrdlqrdldshTIIMGDFNThcqy*td*qdrR 1143 8888888888888999999999999999999999999999999********9555555555552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.31u 0.34s 00:00:01.65 Elapsed: 00:00:00.79 # Mc/sec: 10885.64 // Query: T215542_3 [L=3005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-07 28.6 0.9 1.7e-06 27.4 0.9 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.9 1e-10 1.7e-06 1 16 [. 2220 2235 .. 2220 2237 .. 0.95 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 1e-10 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+WM+LE+IILS+ T215542_3 2220 SFAGTWMKLETIILSK 2235 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 12642.34 // Query: T358920_1 [L=2785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.76 # Mc/sec: 10483.44 // Query: T358920_2 [L=2785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.7e-13 47.9 5.4 8.2e-06 25.7 2.2 3.3 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.5 0.0 0.0044 72 19 60 .. 767 808 .. 740 833 .. 0.40 2 ! 25.7 2.2 5e-10 8.2e-06 4 65 .. 837 898 .. 835 900 .. 0.95 3 ! 17.3 0.5 2.1e-07 0.0034 10 64 .. 903 957 .. 900 960 .. 0.78 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.0044 Pentapeptide_4 19 searlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 s+++l + ++++ ls+ +++ +ls ++ + l+ +s T358920_2 767 SSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSS 808 222222222222222222222222222222222222222222 PP == domain 2 score: 25.7 bits; conditional E-value: 5e-10 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 +++++ +c+ls +++s++ l ++++ +++ls+v+ + c+ls+v ++ + l+r+++s+c l++ T358920_2 837 SSVTLSACCLSSMTLSACGLSSTTLFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSS 898 6899******************************************************9986 PP == domain 3 score: 17.3 bits; conditional E-value: 2.1e-07 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 +c ls+v++s+++l + + + + ls++++ c ls+ ++ ++l+++++s++ l+ T358920_2 903 ACGLSRVTLSACHLSSMTVSTCGLSSMTLFACGLSSMTLSACRLSNVTLSNFPLA 957 5778888888888888888888888888888888888888888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.61 # Mc/sec: 13061.33 // Query: T358920_3 [L=2785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.67 # Mc/sec: 11891.66 // Query: T248985_1 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 491 (0.0301116); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:00.68 # Mc/sec: 8666.63 // Query: T248985_2 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-07 30.7 0.1 1.6e-06 28.1 0.1 2.1 1 V-set Immunoglobulin V-set domain 0.0066 16.4 1.4 0.091 12.7 0.0 3.0 3 I-set Immunoglobulin I-set domain ------ inclusion threshold ------ 0.011 15.7 1.2 0.18 11.9 0.1 2.7 2 ig Immunoglobulin domain Domain annotation for each model (and alignments): >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.1 3e-10 1.6e-06 12 108 .. 98 220 .. 91 221 .. 0.82 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 3e-10 SEEEEEEEESSSSCCTCSEEEEEEEETTS.......CEEEEEEEETT...................TEEEEESTTTEEEEE.ETTTTEEEEEESSESGGG CS V-set 12 esvtLsCtlssseseeslsiyWyrqppgk.......epeelilyysn...................sskegkkkgrfslrg.dpsrsdfsLtiqnlqlsD 84 ++vtLsC++s + +e+l+++W r++ ++ ++ +l++ y + +++++ +gr+s+ + +s++++sL ++n+ D T248985_2 98 TDVTLSCHFSFVKGTENLEFSWEREDIKQayevednKEYYLLFKYLDffevfsklvyqfhnnteqlEDQNSLYEGRVSVDQaEISEGTLSLLLRNVDFMD 197 6899999999447789999999998887788888876666666666677788888888888***988888888*************************** PP -EEEEEEEESSSEEEEEEEEEEEE CS V-set 85 sGtYfCavvssgegvfgsgtrLtV 108 +++Y C+ ++ g+ +s+++L V T248985_2 198 EAIYKCS-AITPDGRGESTIKLIV 220 *******.6777777777777776 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.0 1.7e-05 0.091 43 90 .] 160 220 .. 98 220 .. 0.71 2 ? -0.1 0.0 0.16 8.7e+02 29 76 .. 469 520 .. 468 527 .. 0.81 3 ? -3.2 0.1 1.6 8.4e+03 66 75 .. 935 944 .. 933 945 .. 0.83 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.7e-05 T..........SSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEEETSEEEEEEEEEEE CS I-set 43 s..........sqrvkvtvee...aeytLtIsnvevsDeGkYtckatnsagkaeakaeLkV 90 + + rv+v++ e ++ +L ++nv+ De +Y+c a g+ e++++L V T248985_2 160 TeqledqnslyEGRVSVDQAEiseGTLSLLLRNVDFMDEAIYKCSAITPDGRGESTIKLIV 220 044555556667788888888888999**************************99999987 PP == domain 2 score: -0.1 bits; conditional E-value: 0.16 S-EEEEEET.TCB-STSSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 29 epsvsWakd.gselkssqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 +p v+W+ + +++l++ + v++ +e+ + I + v+ + kY c +t T248985_2 469 TPIVTWLDRtERDLSNHSIVEILEEQmngFYRVFSILKYPVKLNEKYLCHIT 520 589******9******999999999876556678888888888888888776 PP == domain 3 score: -3.2 bits; conditional E-value: 1.6 GGGEEEEEEE CS I-set 66 sDeGkYtcka 75 +D ++Ytc++ T248985_2 935 RDGDEYTCTV 944 7999****98 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 3.3e-05 0.18 13 84 .. 99 215 .. 92 218 .. 0.79 2 ? -2.7 0.1 1.2 6.5e+03 66 75 .. 936 945 .. 934 945 .. 0.76 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 3.3e-05 -EEEEEEEE..SSCCTSEEEEEESSCSSSEEEE...........................................EEEEETTCEEEEEEEESSSTGGG- CS ig 13 satLtCsvs..tqtkptdvtWkkegqtkiesqk...........................................vvkegnrrkgssslliskvteeda 67 +tL+C+ s +t++++++W++e+ + + +v + + +g+ sll+++v d+ T248985_2 99 DVTLSCHFSfvKGTENLEFSWEREDIKQAYEVEdnkeyyllfkyldffevfsklvyqfhnnteqledqnslyegrvSVDQAEISEGTLSLLLRNVDFMDE 198 799********************98544444444569999999999999999998887777777777777777766666666666777************ PP EEEEEEEEETTEEEEEE CS ig 68 GtYtCevnnsgssvtls 84 Y C + ++++ +++ T248985_2 199 AIYKCSAITPDGRGEST 215 *****999999877765 PP == domain 2 score: -2.7 bits; conditional E-value: 1.2 G-EEEEEEEE CS ig 66 daGtYtCevn 75 d+ +YtC+v+ T248985_2 936 DGDEYTCTVS 945 4449***996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.66 # Mc/sec: 8924.92 // Query: T248985_3 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 11.8 1.4 0.35 10.4 1.4 1.7 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 1.4 2.1e-05 0.35 9 22 .. 1336 1349 .. 1335 1351 .. 0.91 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 2.1e-05 DUF3704 9 GYMPksgIAGSSdS 22 GY P+sgIAGS ++ T248985_3 1336 GYIPMSGIAGSYGN 1349 9**********876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.70 # Mc/sec: 8414.93 // Query: T337158_1 [L=5054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.79u 0.49s 00:00:03.28 Elapsed: 00:00:00.89 # Mc/sec: 16245.66 // Query: T337158_2 [L=5054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.44s 00:00:02.17 Elapsed: 00:00:00.76 # Mc/sec: 19024.52 // Query: T337158_3 [L=5053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.76 # Mc/sec: 19020.76 // Query: T138129_1 [L=7710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1145 (0.0702196); expected 326.1 (0.02) Passed bias filter: 252 (0.0154544); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.53u 0.50s 00:00:04.02 Elapsed: 00:00:00.95 # Mc/sec: 23217.89 // Query: T138129_2 [L=7709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1353 (0.0829756); expected 326.1 (0.02) Passed bias filter: 360 (0.0220778); expected 326.1 (0.02) Passed Vit filter: 123 (0.00754324); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.75u 0.60s 00:00:05.35 Elapsed: 00:00:01.27 # Mc/sec: 17365.46 // Query: T138129_3 [L=7709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1261 (0.0773335); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 117 (0.00717527); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.11u 0.53s 00:00:04.64 Elapsed: 00:00:01.07 # Mc/sec: 20611.34 // Query: T089657_1 [L=5717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.43s 00:00:02.30 Elapsed: 00:00:00.88 # Mc/sec: 18585.64 // Query: T089657_2 [L=5716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.41s 00:00:02.25 Elapsed: 00:00:00.72 # Mc/sec: 22711.81 // Query: T089657_3 [L=5716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.40s 00:00:02.31 Elapsed: 00:00:00.88 # Mc/sec: 18582.39 // Query: T293993_1 [L=4135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.84 # Mc/sec: 14082.78 // Query: T293993_2 [L=4134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.77 # Mc/sec: 15359.31 // Query: T293993_3 [L=4134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.38s 00:00:01.75 Elapsed: 00:00:00.87 # Mc/sec: 13593.87 // Query: T164159_1 [L=2230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 8985.42 // Query: T164159_2 [L=2230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 9814.85 // Query: T164159_3 [L=2229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.66 # Mc/sec: 9661.80 // Query: T122144_1 [L=4062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.37s 00:00:01.86 Elapsed: 00:00:00.68 # Mc/sec: 17089.25 // Query: T122144_2 [L=4062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:00.84 # Mc/sec: 13834.16 // Query: T122144_3 [L=4061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.44s 00:00:01.99 Elapsed: 00:00:00.81 # Mc/sec: 14343.00 // Query: T218619_1 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-18 65.6 0.1 8.5e-18 63.9 0.0 1.9 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.9 0.0 5.2e-22 8.5e-18 17 60 .. 202 245 .. 197 245 .. 0.95 2 ? -3.2 0.0 0.43 7e+03 69 80 .] 254 265 .. 254 265 .. 0.92 Alignments for each domain: == domain 1 score: 63.9 bits; conditional E-value: 5.2e-22 Transposase_1 17 tpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa 60 + k++pk++l kkvm+tVwWsa+gli+y+fl+pg+titse+Ya T218619_1 202 SSKTLPKAKLAPKKVMVTVWWSAAGLIHYNFLNPGKTITSEKYA 245 5799***************************************7 PP == domain 2 score: -3.2 bits; conditional E-value: 0.43 Transposase_1 69 klqekrpalvnr 80 klq+++pa vnr T218619_1 254 KLQCLQPAFVNR 265 79********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 3160.76 // Query: T218619_2 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 14.9 1.1 0.028 14.1 1.1 1.3 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 1.1 1.7e-06 0.028 11 30 .. 196 215 .. 196 218 .. 0.96 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.7e-06 Transposase_1 11 Wldkgetpkkvpkpelhqkk 30 Wld++e++k++pkp+lhqk+ T218619_2 196 WLDQEEAQKHFPKPNLHQKR 215 ******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 3061.98 // Query: T218619_3 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 3266.11 // Query: T099094_1 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.2 6.7 19.7 2.5e+02 1.8 0.1 8.7 4 Neural_ProG_Cyt Neural chondroitin sulphate proteoglycan cyt Domain annotation for each model (and alignments): >> Neural_ProG_Cyt Neural chondroitin sulphate proteoglycan cytoplasmic domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.1 0.015 2.5e+02 89 104 .. 330 345 .. 302 359 .. 0.64 2 ? 1.7 0.3 0.017 2.7e+02 100 101 .. 381 382 .. 349 427 .. 0.64 3 ? -3.0 7.2 0.46 7.5e+03 97 97 .. 488 488 .. 420 588 .. 0.69 4 ? 1.7 0.1 0.017 2.7e+02 92 118 .. 593 619 .. 581 620 .. 0.68 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.015 Neural_ProG_Cyt 89 slniqnslspklendk 104 +++ qns+sp +e++ T099094_1 330 AMEGQNSVSPAMEGQN 345 2344555555555554 PP == domain 2 score: 1.7 bits; conditional E-value: 0.017 Neural_ProG_Cyt 100 le 101 +e T099094_1 381 ME 382 33 PP == domain 3 score: -3.0 bits; conditional E-value: 0.46 Neural_ProG_Cyt 97 s 97 s T099094_1 488 S 488 1 PP == domain 4 score: 1.7 bits; conditional E-value: 0.017 Neural_ProG_Cyt 92 iqnslspklendkgeendlevnslqnn 118 qns+sp +e++ ++e ++ n T099094_1 593 GQNSVSPAMEGQNCVSPAMEEQCVSSN 619 478888888887776666666666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 3205.95 // Query: T099094_2 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-06 24.4 63.9 0.0016 16.9 21.3 3.0 3 Sfi1 Sfi1 spindle body protein ------ inclusion threshold ------ 0.23 12.5 3.8 0.88 10.7 3.8 2.0 1 CK1gamma_C Casein kinase 1 gamma C terminal Domain annotation for each model (and alignments): >> Sfi1 Sfi1 spindle body protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 21.3 2e-07 0.0016 431 558 .. 305 426 .. 276 427 .. 0.88 2 ! 14.3 22.6 1.2e-06 0.0097 397 540 .. 426 558 .. 424 566 .. 0.70 3 ! 4.9 5.6 0.00087 7.1 337 383 .. 566 612 .. 558 636 .. 0.57 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 2e-07 Sfi1 431 skalnaWrskaaevaalsqqaeqleqeklleaaielldkWrektlerkkraeeadelyaeqllekalarwkerlrelqeleeqAeqveaekqlsiasaaL 530 + +l++Wr++++ ++ +++ l+q k + + +l++W+++t+ +++r + l +++ +++l++ ++r+ lq+ +++A+ +++ ++++ + L T099094_2 305 AVCLQQWRDRTVCLQQRRDRTVCLQQWKDRTV---CLQQWKDRTVCLQQRKDRTVCLQQRRDRTVCLQQRRDRTVCLQQWKDRAVCLQQRRDRTVC---L 398 35***************999999999966666...*************************************************************...* PP Sfi1 531 kklslrlfqikskeetAealrernerkh 558 ++++ r++ ++ +++tA l++r +r + T099094_2 399 QQWKDRTVCLQQRRDTAVCLQQRRDRTV 426 ***********************99965 PP == domain 2 score: 14.3 bits; conditional E-value: 1.2e-06 Sfi1 397 kaLkkWrkateesrreRrrdayaqvrrkvkinLaskalnaWrskaaevaalsqqaeqleqeklleaaielldkWrektlerkkraeeadelyaeqlleka 496 +L++Wr+ t +++R r+ q rr + +l++Wr++++ ++ +++ l+q+k + + +l++ +++t+ +++r + l +++ +++ T099094_2 426 VCLQQWRDRTVCLQQRRDRTVCLQQRRDRT-----VCLQQWRDRTVCLQQRKDRTVCLQQRKDRTV---CLQQRKDRTVCLQQRRDRTVCLQQRRDRTVC 517 577777777777777777777777777764.....4777788888777777777777777755555...7778888887777777777777777777788 PP Sfi1 497 larwkerlrelqeleeqAeqveaekqlsiasaaLkklslrlfqi 540 l++w++r+ lq+ +++ + +++ ++++ + L+++ r++ + T099094_2 518 LQQWRDRTVCLQQRKDRTVCLQQRRDRTVC---LQQWRDRTVCL 558 888888888888888888777777777777...66665555444 PP == domain 3 score: 4.9 bits; conditional E-value: 0.00087 Sfi1 337 svlekwreklaeqrereeeAsefyaprlaqecldawkerlqhvqkle 383 +l++w++++ ++r+++ ++++r cl++wk r+ +q+ + T099094_2 566 VCLQQWKDRTVCLQQRRDRTVCLQQRRDRTVCLQQWKDRTVCLQQWK 612 45666666666666666666666666666666666666655555443 PP >> CK1gamma_C Casein kinase 1 gamma C terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 3.8 0.00011 0.88 5 87 .. 201 277 .. 193 283 .. 0.68 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00011 CK1gamma_C 5 tPvGsiqtqetivspnRerhastakasklkeplsvsqqsskerssawvealkanaetlgnalaadrhggsvQvvSStngeLnt 87 P G+ + vsp er ++ + + + +s + ++ +++s+a + + + ++ ++ +hgg+ Q vSSt g++++ T099094_2 201 APEGE-----VKVSPATERQTHMSLVMERPTHVSPAMEGPTNVSPATEGQNSVSP-ARRDRAVCLQHGGTEQCVSSTEGQSSV 277 45555.....558885555555555446666666667777777777774445555.56666778899*************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 2927.17 // Query: T099094_3 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 2927.17 // Query: T173649_1 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 6104.72 // Query: T173649_2 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 5215.83 // Query: T173649_3 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 5141.32 // Query: T198787_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 2894.77 // Query: T198787_2 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 2799.86 // Query: T198787_3 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 3348.85 // Query: T336895_1 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 4116.42 // Query: T336895_2 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4041.57 // Query: T336895_3 [L=776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3964.29 // Query: T045962_1 [L=953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-18 64.8 0.0 1.7e-17 63.4 0.0 1.6 1 DDE_1 DDE superfamily endonuclease 9.5e-09 35.0 0.0 1.8e-08 34.2 0.0 1.5 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.4 0.0 2.1e-21 1.7e-17 1 131 [. 542 672 .. 542 677 .. 0.89 Alignments for each domain: == domain 1 score: 63.4 bits; conditional E-value: 2.1e-21 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyksnrkawltssifeeW...Lekvfdkrve..kaekrkvlLllddsrshetvelse 95 k++ltvl canaag++k+k+ vig + +pr k ++l+v+ +++ka++t ++f+ L +++ +++ k+lL ld+ +++ e T045962_1 542 KQKLTVLECANAAGTHKIKLAVIGNSLYPRCLKG---VHNLPVHCYAHKKASVTGNLFQLV**aLCASSMSSLQtgLEDNCKILLFLDNCSAQPPPEH-- 636 689*******************************...99*******************97444464555555556789****************5555.. PP DDE_1 96 celqniklvflPasstsllqPldqgvvselKarYrr 131 +++n + + +P+s+ts++qP+dqg+++++K++Y++ T045962_1 637 LAKSNAFGIDFPPSVTSVIQPCDQGILHAVKSKYKQ 672 5*********************************97 PP >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 0.0 2.2e-12 1.8e-08 1 63 [. 412 472 .. 412 475 .. 0.92 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 2.2e-12 THHHHHHHHHHHHHHC.CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTSXX CS HTH_Tnp_Tc5 1 spelEkaLleWirqlrergapitgelirekAqelaslaadpkepdfkaSkgWldrFkkRhgik 63 +++l+ +L+eW+rq+r + p+tg l+ ++A+ ++ +++ e+ S gWl++Fkk +gik T045962_1 412 NEDLDPVLIEWVRQQRSKDTPLTGLLVVKQARIYH--EELNFEGECEYSGGWLQKFKKCLGIK 472 579999****************************6..4577799****************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4620.97 // Query: T045962_2 [L=952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00015 21.1 0.2 0.00033 20.1 0.2 1.6 1 CENP-B_N CENP-B N-terminal DNA-binding domain 0.0028 17.1 1.1 0.0069 15.9 0.2 1.9 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.2 4e-08 0.00033 1 45 [. 341 385 .. 339 387 .. 0.91 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 4e-08 SSSSSS--HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHHHHC CS CENP-B_N 1 rkkRrsLTlreKievIqrleegeSkaelarrfnvpestlsdilkn 45 ++k sL +K+e q+l+ g+S++ l +++ + +t++d +k+ T045962_2 341 KRKHLSLSISQKVELLQKLDGGMSVRCLTEEYGMGTTTIYDLKKQ 385 5666788899*******************************9985 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.094 7.6e+02 56 68 .. 593 605 .. 592 607 .. 0.89 2 ! 15.9 0.2 8.4e-07 0.0069 139 176 .] 682 719 .. 672 719 .. 0.86 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.094 DDE_1 56 sifeeWLekvfdk 68 +if++W++++f++ T045962_2 593 EIFSNWFDRHFVP 605 79*********98 PP == domain 2 score: 15.9 bits; conditional E-value: 8.4e-07 DDE_1 139 alqnrlskeqkkltllnalkfikkAwnavsketIksaw 176 + ++++ k+++l++a+ ++ Awn+v k+t+++aw T045962_2 682 NRGLKIQDILKEFNLKDAIFTVANAWNDVDKSTLTNAW 719 55566777899**************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4863.41 // Query: T045962_3 [L=952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4190.02 // Query: T111738_1 [L=1760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 7192.94 // Query: T111738_2 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 7741.85 // Query: T111738_3 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.61 # Mc/sec: 8249.51 // Query: T052830_1 [L=5139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 11.4 6.8 0.43 10.2 6.8 1.6 1 DUF4573 Domain of unknown function (DUF4573) Domain annotation for each model (and alignments): >> DUF4573 Domain of unknown function (DUF4573) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 6.8 2.6e-05 0.43 6 166 .. 4031 4190 .. 4024 4222 .. 0.57 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 2.6e-05 DUF4573 6 rpteeiqPlegvkeieppqpggkddpleaeekkkdleavteveplkgnaeiePlkaeskiqPlravserdplkaveeieppqaasemkPlktaeniep 103 ++t i+ + + i+ + + + ++ + + ++ ++ +++ + ++ ++ + i+ ++ + + +t+ i++ T052830_1 4031 HTTYTIHTTHTTHSIHTTHTTHTAHITHTAHTIHTTHTIHTTHTARTAHVTHTAHTIHATHSTHTTHTIHTTHTTHTIHTTHTTHTAHVTHTTHTIHT 4128 55555555555555555555555555555555555555555555555555555555556666666666666666666666666666666666666666 PP DUF4573 104 leaarelqPqeavgkieqsqlvetipkenesseilegsqevetaeevqlieplgeveqiqple 166 ++ + + + + ti+ + i +t + i++ + + T052830_1 4129 AHTTHTTHTAHTIHTTHTAHTTHTIHTTHTTHTI-HTTHTTHTTHTIHTIHTTHTAHTTHTAH 4190 6666666666666666666666666666666666.3333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 783 (0.0480191); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.04u 0.42s 00:00:02.46 Elapsed: 00:00:00.89 # Mc/sec: 16518.88 // Query: T052830_2 [L=5139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.37s 00:00:02.10 Elapsed: 00:00:00.89 # Mc/sec: 16518.88 // Query: T052830_3 [L=5139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.43s 00:00:02.18 Elapsed: 00:00:00.79 # Mc/sec: 18609.88 // Query: T362735_1 [L=1203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 6037.86 // Query: T362735_2 [L=1203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.56u 0.47s 00:00:03.03 Elapsed: 00:00:00.90 # Mc/sec: 3823.98 // Query: T362735_3 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.1 8.0 4.2 6.2 7.4 4.2 1.2 1 PRCC Mitotic checkpoint regulator, MAD2B-interacting Domain annotation for each model (and alignments): >> PRCC Mitotic checkpoint regulator, MAD2B-interacting # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 4.2 0.00038 6.2 9 70 .. 724 788 .. 715 866 .. 0.63 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00038 PRCC 9 asessaaaksaptisyeplvssapsveesseedp...petepepasqpeaenadleakkaaksse 70 +++s + ++s+pt++++p+ +s+p+ +++ +p +++p+p+ +p++++a++ + + a +s+ T362735_3 724 PPASTPVPTSTPTSASTPVPTSTPTPASTPDPTPtptSASTPDPTPTPTSASAPVPTPTPAPAST 788 67788888888889999999988854444443330003444444445555555554444444432 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 5210.18 // Query: T007028_1 [L=4902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-11 42.8 0.0 7.3e-11 42.0 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.0 0.0 4.5e-15 7.3e-11 60 106 .. 953 999 .. 941 1003 .. 0.90 Alignments for each domain: == domain 1 score: 42.0 bits; conditional E-value: 4.5e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007028_1 953 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 999 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.76u 0.42s 00:00:02.18 Elapsed: 00:00:00.75 # Mc/sec: 18698.38 // Query: T007028_2 [L=4902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 11.7 0.3 0.28 10.8 0.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.3 1.7e-05 0.28 9 19 .] 4802 4812 .. 4801 4812 .. 0.97 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 1.7e-05 DUF1725 9 LEnIILSEisQ 19 LE I+LSEi+Q T007028_2 4802 LEAIMLSEICQ 4812 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.62u 0.41s 00:00:02.03 Elapsed: 00:00:00.77 # Mc/sec: 18212.71 // Query: T007028_3 [L=4901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-06 25.5 0.0 1.1e-05 24.9 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 6.8e-10 1.1e-05 170 217 .. 7 54 .. 3 61 .. 0.90 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 6.8e-10 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS-HHHHHH CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeedeefeeiae 217 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + +fee++ T007028_3 7 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGPKFEEVSW 54 789********************************9998888988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.75u 0.41s 00:00:02.16 Elapsed: 00:00:00.85 # Mc/sec: 16495.21 // Query: T018830_1 [L=7757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-29 102.1 13.6 2.8e-29 102.1 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region 9e-13 48.1 0.1 9e-13 48.1 0.1 2.8 3 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein ------ inclusion threshold ------ 1.8 8.4 15.1 0.026 14.4 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.2 5.2e-05 0.28 96 143 .. 811 856 .. 798 857 .. 0.87 2 ! 102.1 13.6 5.2e-33 2.8e-29 184 304 .. 895 1006 .. 884 1007 .. 0.94 3 ? -6.8 13.9 3 1.6e+04 123 210 .. 1056 1146 .. 1027 1153 .. 0.53 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 5.2e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018830_1 811 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 856 689**********************9554.57..89*********9976 PP == domain 2 score: 102.1 bits; conditional E-value: 5.2e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk T018830_1 895 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNK 983 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhl.kerlyqyekekaer 304 +L+nec+ ke+l++ye+ekaer T018830_1 984 KLMNECD-H*KESLFRYEREKAER 1006 ******7.55589**********8 PP == domain 3 score: -6.8 bits; conditional E-value: 3 CCDC144C 123 rerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvn 210 + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek++ T018830_1 1056 SQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLE 1146 3334455555555555555555566665554222345555555555555555444444445555555555555555555554444444443 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.9 0.28 1.5e+03 33 65 .. 1087 1119 .. 1064 1131 .. 0.86 2 ? 0.4 0.0 0.061 3.3e+02 39 55 .. 2359 2375 .. 2357 2382 .. 0.88 3 ! 48.1 0.1 1.7e-16 9e-13 102 175 .. 2407 2480 .. 2399 2489 .. 0.92 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.28 BAR_3_WASP_bdg 33 lDlqeveqkveafkkftkkmdesvkellevine 65 l +++v+q +e++++ k ++e++ +l++ +++ T018830_1 1087 LSMKKVQQECEKLEEDKKMLEEEILNLKTHMEN 1119 67899*********************9998865 PP == domain 2 score: 0.4 bits; conditional E-value: 0.061 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 e+k++ fk ftkkmd+ T018830_1 2359 ESKIDGFKCFTKKMDNR 2375 89*************96 PP == domain 3 score: 48.1 bits; conditional E-value: 1.7e-16 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++++ ++e+fa q++kDl+ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018830_1 2407 ELDQAIHFSIDAFHSVSELFASQSRKDLDLAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 2480 7999****************************************************************987654 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 1.1 4.9e-06 0.026 24 94 .. 897 966 .. 893 967 .. 0.95 2 ? -1.8 7.0 0.47 2.6e+03 14 89 .. 1053 1125 .. 1047 1151 .. 0.68 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.9e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018830_1 897 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 966 68999********************************************************76.9999986 PP == domain 2 score: -1.8 bits; conditional E-value: 0.47 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX CS Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss.ls 89 +v++q +l ++ e +++k +++++ n++ ++ ++ ++++ kLe+ L++ + +lk++ e+s ls T018830_1 1053 QVESQFDDLMAEKEAVSSKCVNLAKE----NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVeLS 1125 67777777777777777777777777....77777777777777777777777777777777777777777543444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 602 (0.0369189); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.72u 0.46s 00:00:03.18 Elapsed: 00:00:01.10 # Mc/sec: 20174.05 // Query: T018830_2 [L=7756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-16 59.0 1.1 2e-08 33.9 0.4 2.1 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 6.7e-07 28.6 3.0 9.2e-07 28.1 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 3.1e-09 2.5e-05 2 29 .. 2321 2348 .. 2320 2350 .. 0.91 2 ! 33.9 0.4 2.4e-12 2e-08 185 228 .. 2489 2532 .. 2484 2538 .. 0.92 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 3.1e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018830_2 2321 EIAWRQGKRKAEKDEMVSARFFLALSPP 2348 679**********************975 PP == domain 2 score: 33.9 bits; conditional E-value: 2.4e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018830_2 2489 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2532 679**************************************998 PP >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 3.0 1.1e-10 9.2e-07 145 185 .. 856 896 .. 856 898 .. 0.97 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 1.1e-10 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018830_2 856 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 896 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.10u 0.41s 00:00:02.51 Elapsed: 00:00:00.74 # Mc/sec: 29984.59 // Query: T018830_3 [L=7756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-29 100.9 16.4 6.6e-29 100.9 16.4 2.0 2 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.2 5.9 1 1.6e+04 191 237 .. 170 216 .. 158 267 .. 0.59 2 ! 100.9 16.4 4e-33 6.6e-29 1 96 [. 716 811 .. 716 812 .. 0.99 Alignments for each domain: == domain 1 score: -6.2 bits; conditional E-value: 1 CCDC144C 191 aqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 + + l ++++e+e+ +++ +kq ++e +se + L + + T018830_3 170 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 216 44444444555555555555555555555555555555544444433 PP == domain 2 score: 100.9 bits; conditional E-value: 4e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018830_3 716 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 811 9*********************************************************************************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 471 (0.0288851); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.50u 0.46s 00:00:02.96 Elapsed: 00:00:00.86 # Mc/sec: 25800.69 // Query: T222968_1 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.71 # Mc/sec: 3364.50 // Query: T222968_2 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.67 # Mc/sec: 3561.09 // Query: T222968_3 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-10 40.0 0.0 5.5e-10 39.1 0.0 1.4 1 GATase_7 Glutamine amidotransferase domain 6.5e-06 26.2 0.0 1.1e-05 25.6 0.0 1.3 1 GATase_6 Glutamine amidotransferase domain ------ inclusion threshold ------ 0.1 11.9 0.0 0.16 11.2 0.0 1.2 1 DUF3700 Aluminium induced protein Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.1 0.0 1e-13 5.5e-10 42 123 .. 217 299 .. 214 300 .. 0.90 Alignments for each domain: == domain 1 score: 39.1 bits; conditional E-value: 1e-13 GATase_7 42 Leakghrf..rtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkall 123 L +++++f +tk D e++l+l+++ ++e+++ l G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se kal+ T222968_3 217 LVQHQFEFeyQTKVDGEIILHLYDK-GGIEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVRSEAKALR 299 555555444499************9.8******************************.************9779*********96 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.6 0.0 1.9e-09 1.1e-05 67 130 .. 225 289 .. 213 294 .. 0.82 Alignments for each domain: == domain 1 score: 25.6 bits; conditional E-value: 1.9e-09 GATase_6 67 afrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgla 130 + ++++D e++l+l+++ G e+++ +l+G+faf++ d++++++ l rd + gv+pl+ av+e+g++ T222968_3 225 EYQTKVDGEIILHLYDKGGiEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFL 289 46789**********9999**************************955.67778888887766665 PP >> DUF3700 Aluminium induced protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 2.9e-05 0.16 123 184 .. 245 306 .. 234 316 .. 0.86 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 2.9e-05 DUF3700 123 dqvvkdleGkfafvlyDskaktvfvaldad..gsvplyWGiaadgsvvisddlelvkksCgksf 184 +q + l G fafvl Ds +k+v +ld+d g pl+ ++ dg +++ +++ ++ C + + T222968_3 245 EQTICTLVGVFAFVLLDSANKKV--SLDRDt*GVRPLFKAVTEDGFLAVRSEAKALRLWCLQPL 306 688999**************996..6799978899**************999999998887655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4185.85 // Query: T317528_1 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.62 # Mc/sec: 2376.33 // Query: T317528_2 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 2297.60 // Query: T317528_3 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.68 # Mc/sec: 2162.45 // Query: T051393_1 [L=6026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.40s 00:00:02.19 Elapsed: 00:00:00.70 # Mc/sec: 24627.66 // Query: T051393_2 [L=6026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.35s 00:00:01.98 Elapsed: 00:00:00.67 # Mc/sec: 25730.39 // Query: T051393_3 [L=6025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.36s 00:00:02.22 Elapsed: 00:00:00.81 # Mc/sec: 21279.63 // Query: T138100_1 [L=2326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.67 # Mc/sec: 9931.78 // Query: T138100_2 [L=2326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 8992.28 // Query: T138100_3 [L=2326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 9643.90 // Query: T138431_1 [L=5455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.40s 00:00:02.35 Elapsed: 00:00:00.76 # Mc/sec: 20533.98 // Query: T138431_2 [L=5455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 581 (0.0356311); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.09u 0.43s 00:00:02.52 Elapsed: 00:00:00.79 # Mc/sec: 19754.21 // Query: T138431_3 [L=5454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.42s 00:00:02.46 Elapsed: 00:00:00.80 # Mc/sec: 19503.71 // Query: T212593_1 [L=3120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.36s 00:00:01.72 Elapsed: 00:00:00.73 # Mc/sec: 12227.11 // Query: T212593_2 [L=3119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.37s 00:00:01.66 Elapsed: 00:00:00.76 # Mc/sec: 11740.70 // Query: T212593_3 [L=3119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.77 # Mc/sec: 11588.22 // Query: T117918_1 [L=521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 2569.81 // Query: T117918_2 [L=521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 2365.86 // Query: T117918_3 [L=520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 2438.74 // Query: T282641_1 [L=345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 1618.01 // Query: T282641_2 [L=345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 1731.56 // Query: T282641_3 [L=345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-08 34.1 2.2 6.3e-08 33.3 2.2 1.4 1 TGF_beta Transforming growth factor beta like domain Domain annotation for each model (and alignments): >> TGF_beta Transforming growth factor beta like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 2.2 3.9e-12 6.3e-08 2 83 .. 268 343 .. 267 345 .] 0.72 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 3.9e-12 TGF_beta 2 eCrlrelyvsfkdlgwddwiiaPkgyeanyCsGsClskeakaeksatnhavlqslvkelkpekkvpkpcCvPtklsslslly 83 C+l++ +v++++ w ++i+aPk+++++yC+G+C + ++e ++++ ++ ++ p+ ++C+Pt ++ +sl+ T282641_3 268 LCHLQDRKVNLHRAAWGECIVAPKTLSFSYCQGTC--PALNSELRHSSFECYKRA----VPTCPWLFQTCRPTMVRLFSLMV 343 6**********************************..333333333444444333....33223447889999888887775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 1644.98 // Query: T226945_1 [L=15142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (15142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.90u 0.47s 00:00:04.37 Elapsed: 00:00:01.04 # Mc/sec: 41652.58 // Query: T226945_2 [L=15141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (15141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.87u 0.54s 00:00:04.41 Elapsed: 00:00:01.06 # Mc/sec: 40863.99 // Query: T226945_3 [L=15141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (15141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.42u 0.48s 00:00:03.90 Elapsed: 00:00:01.02 # Mc/sec: 42466.50 // Query: T210839_1 [L=2174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 10723.18 // Query: T210839_2 [L=2174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 10195.81 // Query: T210839_3 [L=2174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 11106.15 // Query: T018769_1 [L=7622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-16 60.4 9.6 2.5e-16 59.6 9.6 1.3 1 CCDC144C CCDC144C protein coiled-coil region 9.9e-09 34.9 0.3 1.8e-08 34.0 0.3 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 9.6 3e-20 2.5e-16 96 185 .. 2133 2220 .. 2120 2222 .. 0.93 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 3e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018769_1 2133 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2220 689**********************9554.57..89*****************************************************99 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.3 2.2e-12 1.8e-08 185 228 .. 3116 3159 .. 3101 3165 .. 0.93 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.2e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018769_1 3116 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 3159 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.28u 0.43s 00:00:02.71 Elapsed: 00:00:00.91 # Mc/sec: 23961.81 // Query: T018769_2 [L=7622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.39s 00:00:02.87 Elapsed: 00:00:01.00 # Mc/sec: 21805.25 // Query: T018769_3 [L=7621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-59 201.5 37.8 1.6e-35 122.6 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 4.3e-07 30.1 8.4 4.3e-07 30.1 8.4 4.0 4 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 1.4 8.8 13.2 0.026 14.4 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.9 15.7 2e-31 1.1e-27 3 96 .. 2040 2133 .. 2040 2134 .. 0.98 2 ! 122.6 14.1 2.9e-39 1.6e-35 184 304 .. 2218 2329 .. 2207 2330 .. 0.96 3 ? -6.6 12.5 3 1.6e+04 130 203 .. 2386 2462 .. 2358 2476 .. 0.47 Alignments for each domain: == domain 1 score: 96.9 bits; conditional E-value: 2e-31 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018769_3 2040 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 2133 599*****************************************************************************************95 PP == domain 2 score: 122.6 bits; conditional E-value: 2.9e-39 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018769_3 2218 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2306 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018769_3 2307 KLMNECDHLKESLFQYEREKAER 2329 **********************9 PP == domain 3 score: -6.6 bits; conditional E-value: 3 CCDC144C 130 rlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyq 203 ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ T018769_3 2386 AEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAM 2462 44444444444444444444444322223444444444444444443333333444444444444444444444333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.8 5.9 3 1.6e+04 29 94 .. 2059 2123 .. 2044 2129 .. 0.78 2 ? 0.2 0.6 0.16 8.9e+02 44 108 .. 2305 2373 .. 2292 2374 .. 0.75 3 ? -4.0 10.4 3 1.6e+04 8 65 .. 2402 2457 .. 2398 2470 .. 0.77 4 ! 30.1 8.4 8e-11 4.3e-07 5 107 .. 2423 2527 .. 2421 2529 .. 0.77 Alignments for each domain: == domain 1 score: -5.8 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018769_3 2059 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 2123 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 0.2 bits; conditional E-value: 0.16 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018769_3 2305 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2373 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -4.0 bits; conditional E-value: 3 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018769_3 2402 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2457 666789***********9..89******999984466666655.445566777777776 PP == domain 4 score: 30.1 bits; conditional E-value: 8e-11 DUF3496 5 ElrikdLeselskmKtsqedsnkteLekykqlyleelkvrks.LsnklnktnerLa....evstkllvekeqnrsllstlttrpvlesPcvgnlnnsl 97 E k Le e+ +Kt e+s eL k + y el r + +kl++ + +++ + + +l++ekeq +++lstl+tr esPcv+nl+ s+ T018769_3 2423 EEDKKMLEEEILNLKTHMENS-MVELSKLQ-EYKSELDERAMqAVEKLEEIHLQIE*ensNDQYQLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SI 2517 556788999999999988777.89998874.57777766655134566666666644322345689*****************************.** PP DUF3496 98 vlnrklipre 107 +lnrk+ip++ T018769_3 2518 GLNRKYIPQM 2527 ********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 1.1 4.8e-06 0.026 24 94 .. 2220 2289 .. 2216 2290 .. 0.95 2 ? -1.6 5.1 0.42 2.3e+03 13 79 .. 2407 2472 .. 2374 2476 .. 0.80 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.8e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018769_3 2220 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2289 68999********************************************************76.9999986 PP == domain 2 score: -1.6 bits; conditional E-value: 0.42 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018769_3 2407 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2472 3333.45678999999999999999999999999999999999999999999999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 695 (0.0426223); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.89u 0.52s 00:00:03.41 Elapsed: 00:00:00.98 # Mc/sec: 22247.33 // Query: T368939_1 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 6089.48 // Query: T368939_2 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 6458.54 // Query: T368939_3 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 6003.71 // Query: T251177_1 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 723 (0.0443395); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 3022.00 // Query: T251177_2 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 7.5 26.5 0.39 11.2 6.3 3.1 3 DUF4766 Domain of unknown function (DUF4766) Domain annotation for each model (and alignments): >> DUF4766 Domain of unknown function (DUF4766) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.3 0.047 7.7e+02 84 106 .. 81 96 .. 60 114 .. 0.55 2 ? 5.1 6.3 0.0018 29 26 60 .. 174 208 .. 169 216 .. 0.65 3 ? 11.2 6.3 2.4e-05 0.39 24 62 .. 257 294 .. 253 341 .. 0.69 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.047 DUF4766 84 syagGhsagGasssssggqlnai 106 + g gG+ s +gg+ ++ T251177_2 81 GVCG----GGG--S-DGGGGKRV 96 2222....111..1.22222222 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0018 DUF4766 26 gGGgaggysggygggygsghgsegaqevkivKvIe 60 gG +gg++ g ggg g+g gs+g++ v +v v++ T251177_2 174 GGRCGGGSGCGGGGGCGGGRGSDGGNGVMVVMVVD 208 33333334456777777788888888888888876 PP == domain 3 score: 11.2 bits; conditional E-value: 2.4e-05 DUF4766 24 ssgGGgaggysggygggygsghgsegaqevkivKvIeqe 62 s+gGGg+g +++g ggg g+g g++g+ v +v v++ e T251177_2 257 SDGGGGGG-GGSGGGGGCGGGRGGDGGSGVMVVMVVDVE 294 34555544.577778888999999999*****9999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 3065.18 // Query: T251177_3 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 3061.09 // Query: T160445_1 [L=3122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-42 143.9 28.5 4.2e-36 124.5 10.9 3.1 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 7.0 6.3e-10 1e-05 8 102 .. 691 793 .. 685 798 .. 0.90 2 ! 124.5 10.9 2.6e-40 4.2e-36 145 269 .. 801 925 .. 801 928 .. 0.95 3 ! 1.5 0.0 0.0061 99 286 315 .. 941 971 .. 939 977 .. 0.68 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 6.3e-10 .XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX...... CS Transposase_22 8 tnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntekqlkiikekq 92 ++++nsk + +s+P++++++ P+ ++++ +++ +el + ++k+ ++ elke + +++ke + k ++e n e+ ++ + e + T160445_1 691 QPKNTENSKGQRASSPPNDRNTPPER--QQNWTEDKTDELTEVGFKRwviENSAELKEHVLTQCKEAKnLHKSLKEtltritNLERNVNDLMELK 783 4589********************99..9*****************97767899*************9899999999999999999999999999 PP .......... CS Transposase_22 93 entskqvmem 102 +nt++++ e T160445_1 784 KNTAQELCEA 793 9999988775 PP == domain 2 score: 124.5 bits; conditional E-value: 2.6e-40 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTTEEE..EES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEE CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqviqd.tvkrPnlr..liGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyr 236 i++ ee +s ed+ ei + k rekr+k++eqslq+i+d kr l liGv e + ++++klenil++ii+enf n+ ++an+++qei+r T160445_1 801 INQAEESISEFEDHPAEIRHANKIREKRMKRNEQSLQEIWD*V-KR--LNl*LIGVHEGDRKNGNKLENILQDIIQENFSNVTRQANMQVQEIQR 892 6899************************************998.45..553449***************************************** PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHH CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavr 269 tP r++ +r+++rhii+r++k+++k+kil++ r T160445_1 893 TPLRYSARRSTTRHIIIRFSKAEMKEKILRTPR 925 ******************************987 PP == domain 3 score: 1.5 bits; conditional E-value: 0.0061 ---HHHHH.HHHHHHHHHHHHH.HTT---EEE CS Transposase_22 286 dlsaetlk.arrewtdviqilk.ekkfqPrll 315 dlsaet arr+w ++++ilk e q ++ T160445_1 941 DLSAET-L*ARRDWEPILDILKkEISTQNCIS 971 666666.2369**********72456666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 770 (0.0472219); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.37u 0.41s 00:00:01.78 Elapsed: 00:00:00.83 # Mc/sec: 10760.86 // Query: T160445_2 [L=3122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-19 68.7 0.2 5.9e-19 68.0 0.2 1.3 1 Transposase_22 L1 transposable element 6.7e-12 45.3 0.9 2.1e-07 30.5 0.5 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.0 0.2 7.2e-23 5.9e-19 308 367 .. 962 1023 .. 961 1024 .. 0.98 Alignments for each domain: == domain 1 score: 68.0 bits; conditional E-value: 7.2e-23 TT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 kkfqPr++y a ls+ ++Gei++f dk++l d+++trPal++llke ++erk+ yq+l+++ T160445_2 962 KKFQPRIVYLANLSFKSKGEIRFFPDKQMLSDFVTTRPALQELLKEalNMERKNWYQSLQKH 1023 89**********************************************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.5 2.6e-11 2.1e-07 3 72 .. 1571 1648 .. 1569 1649 .. 0.90 2 ! 12.7 0.0 7.4e-06 0.06 109 158 .. 1686 1735 .. 1683 1751 .. 0.79 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 2.6e-11 -TT......S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEE CS RVT_1 3 Kkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...eellkalkkkkkaklll 72 K+g +++Rpis +++d k+lnk++ ++++++++kl+++nq f +g + + ++ ++++ +++++k +++++ T160445_2 1571 KPGrdttkRENFRPISPMTIDEKILNKILTNQIQQHIKKLIHHNQLSFISGMQGWFNIsk*MNIVYHINRTKDKNHMI 1648 6666666678***************************************************99999999999888775 PP == domain 2 score: 12.7 bits; conditional E-value: 7.4e-06 ...............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 109 lstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 +++ ++++ ++ s ++ + ++q ++lSPllfn++++ l r +r++ T160445_2 1686 MTNSQYHIEWSKAGSIPFENWYKTRQECPLSPLLFNILLEILARAIRQEK 1735 55555555555667788899999************************974 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.63 # Mc/sec: 14177.00 // Query: T160445_3 [L=3121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.70 # Mc/sec: 12755.21 // Query: T277141_1 [L=2940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 12553.49 // Query: T277141_2 [L=2940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 11066.90 // Query: T277141_3 [L=2939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.76 # Mc/sec: 11063.13 // Query: T212594_1 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:00.67 # Mc/sec: 15602.20 // Query: T212594_2 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 14126.31 // Query: T212594_3 [L=3653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.39s 00:00:01.66 Elapsed: 00:00:00.60 # Mc/sec: 17417.69 // Query: T011199_1 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 5200.58 // Query: T011199_2 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 4278.62 // Query: T011199_3 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4931.30 // Query: T212084_1 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 6584.38 // Query: T212084_2 [L=1472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 6903.51 // Query: T212084_3 [L=1472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 6478.68 // Query: T325743_1 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.84 # Mc/sec: 8337.28 // Query: T325743_2 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 9863.82 // Query: T325743_3 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.4 9.8 18.1 0.41 9.7 1.5 3.2 3 DUF1943 Domain of unknown function (DUF1943) 0.42 10.1 3.6 1.8 8.0 0.1 2.8 2 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain Domain annotation for each model (and alignments): >> DUF1943 Domain of unknown function (DUF1943) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 1.5 5e-05 0.41 248 297 .. 14 61 .. 2 72 .. 0.80 2 ? 4.8 6.4 0.0016 13 220 287 .. 295 357 .. 243 374 .. 0.51 3 ? 2.4 0.4 0.0088 72 222 274 .. 342 391 .. 338 395 .. 0.65 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 5e-05 DUF1943 248 svsvevvatmgvdpelvqsgvkvksnlhsstplkakvkldlgkkelklkl 297 + ve v t+ v + v++gvkvk ++ +++++ka+v++++ k ++lk+ T325743_3 14 VMMVELVKTVEVRM-EVRTGVKVKVKVEVRMEVKAEVRMKVRIK-VRLKV 61 67789999999999.9**********************995544.44333 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0016 DUF1943 220 lkvsgkadleplsqllpkkiklegdvkpsvsvevvatmgvdpelvqsgvkvksnlhsstplkakvkld 287 l++++k++++ ++ k+++e+++ v v++ ++ v +el+ + +++ ++ +++ ++kv+ + T325743_3 295 LRMEVKVEVR-----MEVKVRVEVRMAVRVEVRMEVKVEVRTELKVEVRMMRMEVKVEVRTELKVEAR 357 3333333333.....22233333333333333334444444434433344444444444444444444 PP == domain 3 score: 2.4 bits; conditional E-value: 0.0088 DUF1943 222 vsgkadleplsqllpkkiklegdvkpsvsvevvatmgvdpelvqsgvkvksnl 274 +++k++++ + + + + +++e+++k + vev +m v +v+ vk++++l T325743_3 342 MEVKVEVRTELKVEARMMRMEVKMKLGIEVEVEIRMEV---MVEEMVKMVKTL 391 44444444434456789999988888888888888888...445556665555 PP >> LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.1 0.00022 1.8 67 113 .. 39 88 .. 14 89 .. 0.68 2 ? 1.2 0.4 0.027 2.2e+02 69 101 .. 323 355 .. 251 367 .. 0.75 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00022 EEEEEEEEEEEEEEEC...ECCEEEEEEEEEEEEEEEEEETTSEEEEEEE CS LBP_BPI_CETP 67 liiplslkisgklpll...gsflelavgvsitaelalerdeqGrprlvls 113 + + +++k++++++++ +++ v + ++ e+++e+ +Gr++++l+ T325743_3 39 VEVRMEVKAEVRMKVRikvRLKVRIKVRLKVRMEVRMESRRKGRTEVRLE 88 3344444444444444221155777**********************987 PP == domain 2 score: 1.2 bits; conditional E-value: 0.027 EEEEEEEEEEEEECECCEEEEEEEEEEEEEEEE CS LBP_BPI_CETP 69 iplslkisgklpllgsflelavgvsitaelale 101 + +++++++ l+++ +++ v+v++++el++e T325743_3 323 MEVKVEVRTELKVEVRMMRMEVKVEVRTELKVE 355 355666666677777777777777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.18u 0.34s 00:00:01.52 Elapsed: 00:00:00.80 # Mc/sec: 8754.14 // Query: T008087_1 [L=278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 801 (0.049123); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 109 (0.00668466); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 1262.40 // Query: T008087_2 [L=278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.9 34.5 0.064 13.4 34.5 1.2 1 PTPRCAP Protein tyrosine phosphatase receptor type C-ass 0.13 10.4 24.8 0.16 10.1 24.8 1.1 1 CDC45 CDC45-like protein 0.5 9.6 35.3 0.72 9.1 35.3 1.2 1 SDA1 SDA1 2.1 8.3 8.2 3.4 7.6 8.2 1.3 1 DDHD DDHD domain 3.7 5.5 40.6 4.6 5.2 40.6 1.0 1 Nop14 Nop14-like family 4.9 5.4 39.2 6.3 5.0 39.2 1.1 1 Mpp10 Mpp10 protein 5.8 5.6 12.4 7.2 5.3 12.4 1.1 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 34.5 2.8e-05 0.064 39 124 .. 65 148 .. 37 163 .. 0.62 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.8e-05 PTPRCAP 39 edgeedeeeEdqedeedeeedsedle.ggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedaegeasggsaeaLLsdLha 124 e++eed eeE++e+ee+eee++ e ++eee+e++eee++e+ee +ee+ +e++ee +eek++k++a + ++g ++++Ls L+ T008087_2 65 EEKEEDGEEEKEEEEEEEEEEE---E*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKKKACARETEGLGDVMLSALKM 148 5666666666666666655543...2222222222333333333333344444445555557778878888899**********996 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 24.8 7.1e-05 0.16 118 194 .. 73 143 .. 64 193 .. 0.29 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 7.1e-05 CDC45 118 eereayealeeeeesdedd.........eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse...........p 194 ee+e e+ eeee + eeeee+++eeeeeeeee+eeeeee++ee +++k+++ T008087_2 73 EEKE-EEEEEEEE-----Eee*eeeeeeEEEEEEEEEEEEEEEEEEEEEEEEEGEE--------------------EKEKKKKACareteglgdvmL 143 1111.11111111.....11222111111111111111111111111111111111....................111111111122333444331 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 35.3 0.00031 0.72 103 179 .. 70 129 .. 53 175 .. 0.35 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00031 SDA1 103 dwevesdddseedseggwidvesdee.ieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekekv 179 d e e+ e++ + e++ee +ee++e+e+eeeeeeeeee+ee eeeeeeeee eeekek+k+ T008087_2 70 DGEEEK--------EEEEEEEEEEEE*EEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEGEEEKEKKKK 129 111111........00000001111121111111111111111111111..........1111111111111111111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 8.2 0.0015 3.4 132 192 .. 94 172 .. 53 204 .. 0.38 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0015 DDHD 132 aklaesqksherssesskesqeskaaesssasssaksssaee...................kveledkeleeeaeekka...............k 192 ++++e+++++e+++e+++e++e++++ ++++ e + ++ed +++ + T008087_2 94 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEK----------EkkkkacareteglgdvmlsALKMEDGAMTQ------GretasrnlqrqgnifS 172 1111111111111111111111111111111..........0111222333445554444433333322222......02222223444455552 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 40.6 0.002 4.6 348 421 .. 66 129 .. 55 166 .. 0.48 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.002 Nop14 348 eededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaa 421 e++ed +ee+++++e+e+eeee eeeee+eeeee+eeeeeeeee+e++++++e e eee+e kk++ T008087_2 66 EKEEDGEEEKEEEEEEEEEEEE*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EGEEEKE---------KKKK 129 23333333333334444444446555555444444444443322222211111..1122222.........1111 PP >> Mpp10 Mpp10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 39.2 0.0027 6.3 97 166 .. 68 129 .. 56 164 .. 0.42 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0027 Mpp10 97 eeseeeeeeeeeeeeeeeee.eeeeeeeeeeeeeekeeseekeeeeesekeeeeededeeeeieeeekksk 166 ee+ eee+eeeeeeeeeeee eeeeeeeeee e+eeeee e+eeeee+e+eee++ee+ekk+k T008087_2 68 EEDGEEEKEEEEEEEEEEEE*EEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEGEEEKEKKKK 129 1111112222222222222232222222222.........1111111112221222222222222222222 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 12.4 0.0031 7.2 268 315 .. 69 123 .. 44 167 .. 0.51 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0031 DUF913 268 skseasssssssetkeeek..........ssededvemeda....eaetesesdeeeeseee 315 ++ e++++++++e++ee + + e+e++ e+e+e+e++eeee eee T008087_2 69 EDGEEEKEEEEEEEEEE-Ee*eeeeeeeeE------EEEEEeeeeEEEEEEEEEEEEEGEEE 123 22233333333333333.158765433211......11111112211111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1616 (0.0991046); expected 326.1 (0.02) Passed bias filter: 534 (0.0327487); expected 326.1 (0.02) Passed Vit filter: 237 (0.0145345); expected 16.3 (0.001) Passed Fwd filter: 86 (0.00527413); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 1223.55 // Query: T008087_3 [L=277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 15.2 16.6 0.03 14.6 16.6 1.3 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.025 14.6 10.9 0.029 14.4 10.9 1.1 1 DDHD DDHD domain 0.029 13.0 26.7 0.037 12.7 26.7 1.0 1 NPR3 Nitrogen Permease regulator of amino acid tr 0.036 14.0 7.2 0.044 13.7 7.2 1.1 1 RP-C_C Replication protein C C-terminal region 0.061 13.6 9.4 0.079 13.3 9.4 1.2 1 DUF4228 Domain of unknown function (DUF4228) 0.066 11.9 2.6 0.069 11.8 2.6 1.1 1 Otopetrin Otopetrin 0.32 10.0 12.7 0.38 9.8 12.7 1.1 1 Zip ZIP Zinc transporter 0.89 8.1 19.0 1.2 7.7 19.0 1.1 1 Presenilin Presenilin 1.2 8.7 23.4 1.5 8.3 23.4 1.1 1 AAA_11 AAA domain 1.3 7.8 20.6 1.6 7.5 20.6 1.0 1 SLC12 Solute carrier family 12 2.6 6.3 21.8 3.4 6.0 21.8 1.0 1 VID27 VID27 cytoplasmic protein 4.4 5.7 8.5 4.6 5.7 8.5 1.0 1 Ndc1_Nup Nucleoporin protein Ndc1-Nup 6.2 6.1 22.5 8.3 5.6 22.5 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 7.6 5.1 24.4 10 4.6 24.4 1.1 1 Tim54 Inner membrane protein import complex subuni 8.1 4.3 10.0 9.6 4.0 10.0 1.0 1 DUF2126 Putative amidoligase enzyme (DUF2126) 9 5.5 29.3 12 5.1 29.3 1.1 1 DUF1510 Protein of unknown function (DUF1510) 9.9 5.3 26.1 14 4.8 26.1 1.2 1 RPOL_N DNA-directed RNA polymerase N-terminal Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 16.6 3.1e-05 0.03 26 77 .. 72 123 .. 21 140 .. 0.51 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 3.1e-05 RNA_pol_Rpc4 26 dkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaakl 77 +k+++ ++++k+k++++++++k++++++++kk+kkk++kkkkkkk+k++k+ T008087_3 72 KKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKK 123 1222222222222222222222222222222222222222222222222111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 10.9 3e-05 0.029 120 184 .. 64 128 .. 25 169 .. 0.54 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3e-05 DDHD 120 lnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee 184 +++ +k++++++++ ++++k+++++++++k+++++k+++++++++++k++++++k+e ++k+ ++ T008087_3 64 WKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRR 128 33333333333333333333333333333333322222222222222222222211111111111 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 26.7 3.8e-05 0.037 42 112 .. 62 132 .. 52 165 .. 0.52 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.8e-05 NPR3 42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 +w+k+kk +kk+k++r++++k+kksk+++kk+ +++k++++++kk++k+++++++k++++++k+ +++ T008087_3 62 NRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVR 132 68999977664444444444444444444443333333333333333332222222222222222222222 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 7.2 4.6e-05 0.044 37 100 .. 58 134 .. 55 182 .. 0.66 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 4.6e-05 RP-C_C 37 eevenaleaklkaenssanesqnerhiqnsnpesssesepasekereekeaaaasaeaepsek.............k 100 +++ n++++k+k e+++++ ++++++++s+++ +++++++++k++++k++++++++++++++ k T008087_3 58 TRILNRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEkkkkkrrrkhvreK 134 67889999999999999999999999999999655554433333333222222222222222223344445444443 PP >> DUF4228 Domain of unknown function (DUF4228) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 9.4 8.3e-05 0.079 92 158 .. 70 132 .. 18 165 .. 0.55 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 8.3e-05 DUF4228 92 vaalalkaskalakks.kkskrssaakksrsspsesskgsksrgrsssrvlelkkelsealsrgrrvr 158 + +++ k++k+++kk+ +k +++kk+r+++++++k+ k++++++++ + kke +++++r+++vr T008087_3 70 MEKKKKKRRKKKKKKKkSK----KKRKKKRKKKKKKKKK-KKKKKKKKKKKKKKKEKKKKKRRRKHVR 132 2232211111111111111....1111111111111111.1111111111111222222222333333 PP >> Otopetrin Otopetrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 2.6 7.2e-05 0.069 96 156 .. 68 144 .. 56 238 .. 0.54 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 7.2e-05 Otopetrin 96 keitayhkkeesareasessssarqdalrkakkvltkstatekiisarteqrtastssqs..................s 156 k++ + +kk++++++++++s+++r+++++k+kk ++k+++++k+++++ ++++++++ + + T008087_3 68 KKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKK--KrrrkhvrekqrdlemlccQ 144 333333333333333333333333333322222222222222222221111111111..12233444444555555550 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 12.7 0.0004 0.38 93 171 .. 58 130 .. 53 169 .. 0.46 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0004 Zip 93 eklltmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas 171 ++l+ +++k +k++kk+++ ++++++kk+ +++ ++ ++k++ ++++++++++k++++++k+ek++++ ++++ T008087_3 58 TRILNRWKKK-----KKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKK-KKKKKKKKKKKKKKKKKKKEKKKKKRRRKH 130 4566666666.....333333333222222222222222222222222.222222222222222222222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 19.0 0.0012 1.2 233 295 .. 67 130 .. 48 142 .. 0.28 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0012 Presenilin 233 evakaeeeeeaekkeeeaseeskeeeseeesseksassse.seeeeeeesaeaeseaeesseek 295 ++++++++++++kk++++++++k++++++++++k++++++ ++++++++++++e++++++++++ T008087_3 67 KKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKkKKKKKKKKKKKKEKKKKKRRRKH 130 1111111111111111111111111111111111111111011111111111111111111111 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 23.4 0.0016 1.5 117 187 .. 68 136 .. 43 145 .. 0.39 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0016 AAA_11 117 lekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaee 187 ++ ek ++ ++ +k+++k +k+ r+++++++k+k++k+k+k+k+k++++++k kk++k+ +k ++++++ T008087_3 68 KKM--EKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVREKQR 136 111..111222222222222222222222222222333333333333333333333333333333333333 PP >> SLC12 Solute carrier family 12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 20.6 0.0017 1.6 136 204 .. 67 131 .. 46 145 .. 0.31 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0017 SLC12 136 eeeekeakeaeeseakeseeekkekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslll 204 +++ +++k++++ k+++++kk+k+++k+++++ +++kk ++k+kkk+kkkkk+kkek+kkk++++ + T008087_3 67 KKKMEKKKKKRR---KKKKKKKKSKKKRKKKRKKKKKKKK-KKKKKKKKKKKKKKKKEKKKKKRRRKHV 131 111111111111...1111111111111111111111111.1111122222222222222222222222 PP >> VID27 VID27 cytoplasmic protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 21.8 0.0035 3.4 193 271 .. 65 134 .. 51 144 .. 0.27 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0035 VID27 193 aesleveketeeaaeekeakkeskkkkskeeeeeeeekeaeakkakskeks.skeekkeelapkaaskeapekeellaee 271 ++++++ek++++++++k++kk+skkk +k++++++++k++++kk+k+k+k+ +k+ekk++++ +++ + e+ T008087_3 65 KKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKkKKKEKKKKKR----------RRKHVREK 134 33333222222222222222222111111111111111111111111111101111111111..........11222222 PP >> Ndc1_Nup Nucleoporin protein Ndc1-Nup # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 8.5 0.0048 4.6 363 444 .. 73 133 .. 54 202 .. 0.46 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0048 Ndc1_Nup 363 s.....kapknkasapvkelprlsksplkkk...ddeifgn.....slsaeaspkssssskegvekalsslakspgqsssptarlsararkllek 444 + k++k+k+++++k++++ +k+++kkk + + ++++++ ++ ++r rk++++ T008087_3 73 KkkkrrKKKKKKKKSKKKRKKKRKKKKKKKKkkkK-----KkkkkkKKKKKKE-----------------------------KKKKKRRRKHVRE 133 01111111111111111111111111111110100.....0000111111111.............................1111233333333 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 22.5 0.0087 8.3 18 72 .. 69 124 .. 46 139 .. 0.39 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0087 SpoIIP 18 pteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.dseeeeekl 72 ++e++++++ +k++k+k+++++ +k+ +++++ kk++k+++k+k++ ++++e++k+ T008087_3 69 KMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKkKKKKEKKKK 124 22222222222222222222222222222222222222222222221222222222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 24.4 0.011 10 198 249 .. 72 126 .. 54 142 .. 0.35 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.011 Tim54 198 eeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeek.eeeeeeeekekkkkv 249 ++++++++++++++k+++++++ ++++++k+++k+++k ++++++++++kkkk T008087_3 72 KKKKKRRKKKKKKKKSKKKRKKkrKKKKKKKKKKKKKKKkKKKKKKKKEKKKKKR 126 1111111111111111111111111111111111111110222222222222222 PP >> DUF2126 Putative amidoligase enzyme (DUF2126) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 10.0 0.01 9.6 270 319 .. 71 124 .. 43 143 .. 0.39 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.01 DUF2126 270 eleaeveedpleereelpe....akeaeaeeekeekekakeeeeekekekeeae 319 e++++ ++++ +++++ ++ +++++++++k++k+k+k+++++k+k++++++ T008087_3 71 EKKKKKRRKKKKKKKKSKKkrkkKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKK 124 222222222222222222211111111122222222222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 29.3 0.013 12 48 108 .. 69 127 .. 55 140 .. 0.25 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.013 DUF1510 48 ddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaee 108 + e+++++ ++k++kk++s+++ +++ ++++++++++k++++++++k++++ek+k ++ T008087_3 69 KMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKK--KKRR 127 1111111111111111111111111111111111111111111111111111111..1111 PP >> RPOL_N DNA-directed RNA polymerase N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 26.1 0.014 14 130 187 .. 69 125 .. 55 155 .. 0.41 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.014 HHHHHHHHHTTT.TTCHHHHHHHHSTSHHHHHHHHHHHHHHHSHSSSTTT-TT..... CS RPOL_N 130 raqqlkkkekkkkkkkkkkekkvkklkkkakkakealakekeeekeelkrekweklae 187 +++++kkk++kkkkkkkk++kk kk +kk+kk+k++++k+k+++k+++k+++++k+ + T008087_3 69 KMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKK-K 125 33333333333332222222222222222211111111111111111111111111.1 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3775 (0.23151); expected 326.1 (0.02) Passed bias filter: 1209 (0.0741445); expected 326.1 (0.02) Passed Vit filter: 751 (0.0460567); expected 16.3 (0.001) Passed Fwd filter: 176 (0.0107936); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:00.63 # Mc/sec: 1257.86 // Query: T253759_1 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 3528.36 // Query: T253759_2 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.71 # Mc/sec: 2828.60 // Query: T253759_3 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-08 31.5 0.1 1.6e-07 30.7 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.1 9.6e-12 1.6e-07 2 19 .] 448 465 .. 448 465 .. 0.99 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 9.6e-12 DUF1725 2 FagKWMELEnIILSEisQ 19 Fag+WM+LE+IIL++ +Q T253759_3 448 FAGTWMKLETIILRKLTQ 465 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 3187.78 // Query: T325811_1 [L=2135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 9396.73 // Query: T325811_2 [L=2135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.68 # Mc/sec: 8982.16 // Query: T325811_3 [L=2134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:00.71 # Mc/sec: 8598.61 // Query: T358700_1 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 2423.29 // Query: T358700_2 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 2320.90 // Query: T358700_3 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 573 (0.0351404); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 2423.29 // Query: T057789_1 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 3159.53 // Query: T057789_2 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 4291.24 // Query: T057789_3 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 3901.13 // Query: T367444_1 [L=1081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1663 (0.101987); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 136 (0.00834049); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.50s 00:00:02.04 Elapsed: 00:00:00.84 # Mc/sec: 3681.62 // Query: T367444_2 [L=1080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1134 (0.069545); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 4477.82 // Query: T367444_3 [L=1080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 520 (0.0318901); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 4232.46 // Query: T337204_1 [L=2291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.21 11.4 25.8 61 3.5 0.0 10.1 13 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.077 1.3e+03 9 17 .. 1070 1078 .. 1066 1079 .. 0.88 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1089 1097 .. 1088 1097 .. 0.86 3 ? 2.7 0.0 0.0068 1.1e+02 1 17 [. 1100 1116 .. 1100 1117 .. 0.87 4 ? 3.5 0.0 0.0037 61 1 17 [. 1138 1154 .. 1138 1155 .. 0.89 5 ? 3.5 0.0 0.0037 61 1 17 [. 1157 1173 .. 1157 1174 .. 0.89 6 ? 3.5 0.0 0.0037 61 1 17 [. 1195 1211 .. 1195 1212 .. 0.89 7 ? -2.6 0.1 0.3 4.8e+03 9 15 .. 1222 1228 .. 1221 1229 .. 0.89 8 ? -2.5 0.0 0.29 4.6e+03 9 15 .. 1259 1265 .. 1257 1266 .. 0.89 9 ? 3.5 0.0 0.0037 61 1 17 [. 1270 1286 .. 1270 1287 .. 0.89 10 ? 3.5 0.0 0.0037 61 1 17 [. 1308 1324 .. 1308 1325 .. 0.89 11 ? -2.6 0.1 0.3 4.8e+03 9 15 .. 1335 1341 .. 1334 1342 .. 0.89 12 ? -1.2 0.0 0.11 1.8e+03 1 15 [. 1382 1396 .. 1382 1397 .. 0.84 13 ? -2.6 0.1 0.3 4.8e+03 9 15 .. 1408 1414 .. 1407 1415 .. 0.89 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.077 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337204_1 1070 VCPGVESSA 1078 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337204_1 1089 LCPGVESSA 1097 6*****976 PP == domain 3 score: 2.7 bits; conditional E-value: 0.0068 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337204_1 1100 WSHLPWSRVCPGVESSA 1116 77778999******977 PP == domain 4 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_1 1138 WSRLPWSGVCPGVESSA 1154 788889********977 PP == domain 5 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_1 1157 WSRLPWSGVCPGVESSA 1173 788889********977 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_1 1195 WSRLPWSGVCPGVESSA 1211 788889********977 PP == domain 7 score: -2.6 bits; conditional E-value: 0.3 Ectatomin 9 vCPTlks 15 vCP ++s T337204_1 1222 VCPGVES 1228 9****98 PP == domain 8 score: -2.5 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337204_1 1259 VCPGVES 1265 9****98 PP == domain 9 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_1 1270 WSRLPWSGVCPGVESSA 1286 788889********977 PP == domain 10 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_1 1308 WSRLPWSGVCPGVESSA 1324 788889********977 PP == domain 11 score: -2.6 bits; conditional E-value: 0.3 Ectatomin 9 vCPTlks 15 vCP ++s T337204_1 1335 VCPGVES 1341 9****98 PP == domain 12 score: -1.2 bits; conditional E-value: 0.11 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP +s T337204_1 1382 WSRLPWSGVCPGAES 1396 788889*****8876 PP == domain 13 score: -2.6 bits; conditional E-value: 0.3 Ectatomin 9 vCPTlks 15 vCP ++s T337204_1 1408 VCPGVES 1414 9****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.74 # Mc/sec: 8856.98 // Query: T337204_2 [L=2291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.045 13.5 32.7 57 3.6 0.0 12.9 15 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.097 1.6e+03 9 17 .. 1025 1033 .. 1024 1034 .. 0.89 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1063 1071 .. 1062 1071 .. 0.86 3 ? 1.4 0.0 0.017 2.8e+02 1 17 [. 1074 1090 .. 1074 1091 .. 0.88 4 ? 3.2 0.0 0.0049 79 1 17 [. 1112 1128 .. 1112 1129 .. 0.87 5 ? -2.6 0.1 0.3 4.8e+03 9 15 .. 1140 1146 .. 1139 1147 .. 0.89 6 ? 2.0 0.1 0.011 1.8e+02 1 15 [. 1169 1183 .. 1169 1185 .. 0.89 7 ? 3.2 0.0 0.0049 79 1 17 [. 1207 1223 .. 1207 1224 .. 0.87 8 ? -0.0 0.1 0.048 7.9e+02 6 15 .. 1230 1239 .. 1226 1241 .. 0.88 9 ? 3.6 0.0 0.0035 57 1 17 [. 1244 1260 .. 1244 1262 .. 0.89 10 ? 1.7 0.1 0.014 2.3e+02 1 15 [. 1282 1296 .. 1282 1298 .. 0.87 11 ? 3.2 0.0 0.0049 79 1 17 [. 1320 1336 .. 1320 1337 .. 0.87 12 ? -0.0 0.1 0.048 7.9e+02 6 15 .. 1343 1352 .. 1339 1354 .. 0.88 13 ? 3.2 0.0 0.0049 79 1 17 [. 1357 1373 .. 1357 1374 .. 0.87 14 ? 1.1 0.0 0.021 3.4e+02 6 17 .. 1398 1409 .. 1397 1410 .. 0.89 15 ? -2.5 0.0 0.28 4.6e+03 6 14 .. 1416 1424 .. 1416 1425 .. 0.85 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.097 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337204_2 1025 VCPGVESSA 1033 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337204_2 1063 LCPGVESSA 1071 6*****976 PP == domain 3 score: 1.4 bits; conditional E-value: 0.017 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_2 1074 WSRLPWSRVCPGMESSA 1090 7888899*******977 PP == domain 4 score: 3.2 bits; conditional E-value: 0.0049 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337204_2 1112 WSHLPWSGVCPGVESSA 1128 7777899*******977 PP == domain 5 score: -2.6 bits; conditional E-value: 0.3 Ectatomin 9 vCPTlks 15 vCP ++s T337204_2 1140 VCPGVES 1146 9****98 PP == domain 6 score: 2.0 bits; conditional E-value: 0.011 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP ++s T337204_2 1169 WSRLPWSGVCPGVES 1183 788889*******98 PP == domain 7 score: 3.2 bits; conditional E-value: 0.0049 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337204_2 1207 WSHLPWSGVCPGVESSA 1223 7777899*******977 PP == domain 8 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337204_2 1230 WSGVCPGVES 1239 889*****98 PP == domain 9 score: 3.6 bits; conditional E-value: 0.0035 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337204_2 1244 WSRLPWSGVCPGVESSA 1260 788889********987 PP == domain 10 score: 1.7 bits; conditional E-value: 0.014 Ectatomin 1 iskkvklTvCPTlks 15 +s + vCP ++s T337204_2 1282 WSHLPWSGVCPGVES 1296 7777899******98 PP == domain 11 score: 3.2 bits; conditional E-value: 0.0049 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337204_2 1320 WSHLPWSGVCPGVESSA 1336 7777899*******977 PP == domain 12 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337204_2 1343 WSGVCPGVES 1352 889*****98 PP == domain 13 score: 3.2 bits; conditional E-value: 0.0049 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337204_2 1357 WSHLPWSGVCPGVESSA 1373 7777899*******977 PP == domain 14 score: 1.1 bits; conditional E-value: 0.021 Ectatomin 6 klTvCPTlksmA 17 + vCP ++s A T337204_2 1398 WSGVCPGVESSA 1409 788******977 PP == domain 15 score: -2.5 bits; conditional E-value: 0.28 Ectatomin 6 klTvCPTlk 14 + vCP ++ T337204_2 1416 WSGVCPGVE 1424 788***998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.60 # Mc/sec: 10923.60 // Query: T337204_3 [L=2290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.49 # Mc/sec: 13370.00 // Query: T336898_1 [L=697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 3692.59 // Query: T336898_2 [L=696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3756.86 // Query: T336898_3 [L=696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.67 # Mc/sec: 2971.85 // Query: T377436_1 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.70 # Mc/sec: 6898.69 // Query: T377436_2 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-43 148.3 1.2 2.1e-43 148.3 1.2 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.2 0.1 1.7e+03 179 206 .. 1008 1037 .. 1000 1055 .. 0.82 2 ! 148.3 1.2 1.3e-47 2.1e-43 18 222 .] 1266 1500 .. 1264 1500 .. 0.95 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.1 H..HHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 179 e..lqelleaveewlkesglkinpeKtklv 206 + q+l++++++ ++ +++n++K k T377436_2 1008 DttYQNLWDTFKAVCRVKFIELNAHKRKQE 1037 245999********************8865 PP == domain 2 score: 148.3 bits; conditional E-value: 1.3e-47 -THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET............. CS RVT_1 18 dykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflst 111 +k+l+k++a+r+++ ++kl++++ +gf p + + ++ +++++ ++ k k+++++++D +kaFd+++ +++l++l++++++ + +++i++++ + T377436_2 1266 ECKILSKILANRIQQNMKKLFHHDPVGFIPEMQGWFNIcksiNVIQHVNRTKDKNHMIISIDAEKAFDKIQQPFILKTLNKLGIDGTYLKIIRAIYDK 1363 69***************************************99999999999999******************************************* PP ............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BE CS RVT_1 112 rsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkin 199 +++++ +ng++ e ++ k+g++qG++lSP+lfn++++ l r +r++ ++v+l+++aDD++++ +s ++q+ll+ ++++ k sg+kin T377436_2 1364 PTANIILNGQKLEAFPLKTGTRQGCPLSPFLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLESpIVSAQNLLKLISNFRKVSGYKIN 1461 **********99*********************************99***************************6677******************** PP GGG-EEE.....................ESSEEETTEEE CS RVT_1 200 peKtklvlf...........sg.....kseevkyLGvtl 222 +K +++l+ s+ s+++kyLG++l T377436_2 1462 VQKLQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 1500 *******99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1178 (0.0722433); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 6707.06 // Query: T377436_3 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-122 407.5 22.1 5.1e-108 361.1 10.2 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 4.0 2.3e-18 3.8e-14 1 121 [. 369 473 .. 369 477 .. 0.85 2 ! 361.1 10.2 3.1e-112 5.1e-108 146 367 .. 480 703 .. 479 704 .. 0.99 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 2.3e-18 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX...... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkeliesk...akelealkekeentekqlkiikekq 92 +Gkk+ rk +nsk +++s+P+ke ss Pa e+++++ df+elr+e+++ ++++elke+++++ ak+le k ++e + i k T377436_3 369 MGKKQ---SRKAENSKNQSTSPPPKECSSLPAM--EQSWMESDFDELREEGFRGSNFSELKEEVRTQ*k*AKNLE--KRLDEWLTRMTSIE--KS 454 79999...9************************..*******************************999999875..77888666666632..22 PP ............XXXXXXXXXXXXXXXXX CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqs 121 ++l+elkt + el++e+ T377436_3 455 ----------LNDLMELKTMAGELHDECT 473 ..........2367888888888887775 PP == domain 2 score: 361.1 bits; conditional E-value: 3.1e-112 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 d+leervs +e +i+e+++e k+rekr+k++eqs+q+ d +krPnlrliGv+ese e+++klen+l++ii+enfP l+++an++iqei+ P+ T377436_3 480 DQLEERVSVIEGQINEMKQEEKFREKRVKRNEQSFQE-I*DCMKRPNLRLIGVPESEGENGTKLENTLQDIIQENFPKLARQANIQIQEIQGMPQ 573 89**********************************9.5668***************************************************** PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidk 334 r++s+ra++rh+ivr+tkv++k+k+l+a+rekGrvt kGkPirltad+saetl+a rew+++++il+ek+fqPr++yP kls+i+ Geik+f dk T377436_3 574 RYSSRRATPRHLIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADISAETLQATREWGPIFNILQEKNFQPRISYPVKLSFISVGEIKYFTDK 668 *********************************************************************************************** PP HHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 335 tklrdylstrPalkrllke..knerkdryqaleqa 367 ++lrd+++trPalk+llke ++er+++yq+l+++ T377436_3 669 QMLRDFVTTRPALKELLKEalNMERNNQYQSLQKH 703 *********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 580 (0.0355697); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 7207.58 // Query: T040995_1 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6829.73 // Query: T040995_2 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0002 21.8 0.0 0.00042 20.7 0.0 1.4 1 Ank_2 Ankyrin repeats (3 copies) 0.00049 20.3 0.0 0.0016 18.7 0.0 1.9 1 Ank Ankyrin repeat 0.00071 19.7 0.0 0.0015 18.7 0.0 1.5 1 Ank_5 Ankyrin repeats (many copies) 0.00086 19.5 0.0 0.0021 18.3 0.0 1.6 1 Ank_3 Ankyrin repeat ------ inclusion threshold ------ 0.028 14.9 0.0 0.067 13.7 0.0 1.5 1 Ank_4 Ankyrin repeats (many copies) Domain annotation for each model (and alignments): >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 1.3e-07 0.00042 53 80 .. 374 401 .. 358 405 .. 0.83 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 1.3e-07 Ank_2 53 dgrtaLhlAarsghleivklLlekgadi 80 +grtaLh+A+ +gh e+v +L+++++++ T040995_2 374 SGRTALHWACVNGHAEVVTFLVDRKCQL 401 699999*999999999999999877665 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 4.8e-07 0.0016 2 24 .. 375 397 .. 374 407 .. 0.86 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 4.8e-07 SBBHHHHHHHHTTHHHHHHHHTT CS Ank 2 GnTPLHlAatngkkriiklLLhG 24 G+T+LH+A+ ng+++++ +L+++ T040995_2 375 GRTALHWACVNGHAEVVTFLVDR 397 9******************9954 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 4.6e-07 0.0015 6 44 .. 365 403 .. 362 407 .. 0.88 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 4.6e-07 Ank_5 6 padvnrldgggntpLhlAakggalevvrlLlargadlnl 44 p ++ r+++ g t+Lh+A+ +g++evv +L++r + l++ T040995_2 365 PGRPARQRLSGRTALHWACVNGHAEVVTFLVDRKCQLDV 403 667889999**********************99888776 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 6.4e-07 0.0021 2 28 .. 375 400 .. 374 403 .. 0.88 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 6.4e-07 Ank_3 2 GetpLhlAarsgrpeivkfLlenlgad 28 G+t+Lh+A+ +g+ e+v fL++ + + T040995_2 375 GRTALHWACVNGHAEVVTFLVD-RKCQ 400 9********************9.6654 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 2e-05 0.067 29 55 .] 370 395 .. 363 395 .. 0.89 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 2e-05 Ank_4 29 aqdnrsGetalhiAakrgnveilklLl 55 +q sG+talh A+ +g+ e++ +L+ T040995_2 370 RQ-RLSGRTALHWACVNGHAEVVTFLV 395 55.679*******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 6734.87 // Query: T040995_3 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 7131.04 // Query: T150318_1 [L=1601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 7387.40 // Query: T150318_2 [L=1601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 7763.03 // Query: T150318_3 [L=1601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 6361.37 // Query: T099424_1 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 7644.77 // Query: T099424_2 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 10007.70 // Query: T099424_3 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 8463.66 // Query: T227492_1 [L=3351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.73 # Mc/sec: 13132.39 // Query: T227492_2 [L=3351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 13502.31 // Query: T227492_3 [L=3350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.60 # Mc/sec: 15972.97 // Query: T295449_1 [L=282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-11 41.5 0.6 1.5e-10 40.8 0.6 1.4 1 BAGE B melanoma antigen family Domain annotation for each model (and alignments): >> BAGE B melanoma antigen family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.8 0.6 9.5e-15 1.5e-10 6 28 .] 127 149 .. 122 149 .. 0.96 Alignments for each domain: == domain 1 score: 40.8 bits; conditional E-value: 9.5e-15 BAGE 6 vmLAASAQALEAkLskeDLPvLA 28 v+LA+SAQ+L+A+L+ke++Pv++ T295449_1 127 VFLALSAQLLQARLMKEESPVVS 149 89*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 1367.38 // Query: T295449_2 [L=282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-08 34.2 0.1 3e-08 33.4 0.1 1.3 1 GTF2I GTF2I-like repeat ------ inclusion threshold ------ 0.015 14.9 0.1 0.022 14.3 0.1 1.2 1 AraC_binding_2 AraC-binding-like domain Domain annotation for each model (and alignments): >> GTF2I GTF2I-like repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.1 3.7e-12 3e-08 5 48 .. 227 270 .. 223 271 .. 0.93 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 3.7e-12 GTF2I 5 VeelfnekygeAlglsepvkvpYeklqkdpealvveGLPegvsf 48 + +l n+ ++A++++ pv++pY +q++ e+++veGLP+g+ f T295449_2 227 IYNLINQLSARAVKAKGPVMIPYPFFQSHVEDFYVEGLPKGIFF 270 5679999***********************************98 PP >> AraC_binding_2 AraC-binding-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.1 2.7e-06 0.022 84 134 .. 2 52 .. 1 59 [. 0.91 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.7e-06 AraC_binding_2 84 vldpgrpyrlrwsedceqlvlripralLerplraplrfaprldldsgagal 134 +l+p++ ++ r ++++ + +lr p+a L++p++ +++prl++ ++ ga T295449_2 2 FLSPNQNMQSRNHAHNPMCMLRRPHASLGSPVSPTELLCPRLRGPGEGGAG 52 689***************************************998777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 1260.55 // Query: T295449_3 [L=281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 1236.76 // Query: T325791_1 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 9500.52 // Query: T325791_2 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 9360.80 // Query: T325791_3 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.73 # Mc/sec: 8719.65 // Query: T183230_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 4562.00 // Query: T183230_2 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 4055.11 // Query: T183230_3 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 4120.52 // Query: T125919_1 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.41s 00:00:01.43 Elapsed: 00:00:00.76 # Mc/sec: 7577.44 // Query: T125919_2 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.63 # Mc/sec: 9141.03 // Query: T125919_3 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 8998.20 // Query: T228582_1 [L=353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 1771.71 // Query: T228582_2 [L=352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 1766.69 // Query: T228582_3 [L=352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.099 12.4 5.9 0.33 10.9 5.9 1.9 1 AT_hook AT hook motif Domain annotation for each model (and alignments): >> AT_hook AT hook motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 5.9 2e-05 0.33 1 10 [. 54 63 .. 54 64 .. 0.95 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 2e-05 AT_hook 1 kRkRGRPrKa 10 kR+RGRPrKa T228582_3 54 KRPRGRPRKA 63 8********7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 1798.24 // Query: T060994_1 [L=1223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 5643.22 // Query: T060994_2 [L=1223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 6601.50 // Query: T060994_3 [L=1223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 5553.64 // Query: T324887_1 [L=2301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 9540.25 // Query: T324887_2 [L=2301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 9825.03 // Query: T324887_3 [L=2300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 8891.77 // Query: T162005_1 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 10302.70 // Query: T162005_2 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.80 # Mc/sec: 9916.35 // Query: T162005_3 [L=2772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.77 # Mc/sec: 10298.99 // Query: T040785_1 [L=976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.84 9.9 9.9 1.5 9.1 9.9 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain 3.8 7.5 13.1 5.5 6.9 13.1 1.2 1 DUF262 Protein of unknown function DUF262 6.4 6.7 17.0 13 5.7 17.0 1.4 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 9.9 0.00028 1.5 12 38 .. 97 122 .. 88 148 .. 0.51 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00028 CENP-B_dimeris 12 sesesdeeeeeeeedeededeeddedd 38 e e +eeeeeeee+ee+e+ee++e+d T040785_1 97 EE-EEEEEEEEEEEEEEEEEEEEEEED 122 22.222222222222222222222222 PP >> DUF262 Protein of unknown function DUF262 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 13.1 0.001 5.5 86 158 .. 41 125 .. 6 173 .. 0.47 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.001 DUF262 86 iknleaeiek............ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknli 158 k ++ +k +k ee+++++k + ++++ke+ +++ +++k ++ee+ee++e+ + ++++ ++ee+++ee++ T040785_1 41 KKGRRKKKKKkekekkgrrkkkKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEDRRG 125 1111111111111123333333333444444444444444444444444444444443333333333333334444444444444 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 17.0 0.0024 13 127 189 .. 43 106 .. 26 170 .. 0.44 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0024 DDHD 127 geeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 g+++++k++e++k+ +r+++++ e++++k++++ ++++++k++ +++k++ +++e+ee e+ee+ T040785_1 43 GRRKKKKKKEKEKKGRRKKKKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEeEEEEE 106 2222222222222222333322222222222222222222222222211111111111111110 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2846 (0.174537); expected 326.1 (0.02) Passed bias filter: 1029 (0.0631056); expected 326.1 (0.02) Passed Vit filter: 656 (0.0402306); expected 16.3 (0.001) Passed Fwd filter: 162 (0.00993499); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.08u 0.44s 00:00:03.52 Elapsed: 00:00:00.90 # Mc/sec: 3102.41 // Query: T040785_2 [L=976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.1 1.3 0.09 12.4 1.3 1.3 1 Connexin Connexin 0.9 9.5 5.3 2.1 8.3 5.3 1.5 1 Eapp_C E2F-associated phosphoprotein 2.9 7.5 7.5 3.9 7.1 7.5 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 1.3 1.7e-05 0.09 106 139 .. 89 122 .. 75 204 .. 0.56 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 1.7e-05 Connexin 106 ekekkkekkekkeeekkkkkekkkkekeeskkrr 139 +++++++kk+kk+++kkkkk+kkkk+k+++kk++ T040785_2 89 RRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKT 122 1111111111112222222222222222222222 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 5.3 0.00038 2.1 82 110 .. 93 121 .. 77 157 .. 0.50 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00038 Eapp_C 82 ekkkkkkkkkkkkeekeeeaeaeeaeeee 110 ++kkkkkkkkkkk++k+++++++++++++ T040785_2 93 RRKKKKKKKKKKKKKKKKKKKKKKKKKKK 121 11111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 7.5 0.00072 3.9 117 151 .. 92 123 .. 45 148 .. 0.48 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00072 RR_TM4-6 117 engekeekekekeeakkeseeeeeekkkkkkaksk 151 + + k++ k+k+++kk++++++++kkkkkk+k+ T040785_2 92 R-RRKKK--KKKKKKKKKKKKKKKKKKKKKKKKTG 123 1.11111..11111111111122222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1885 (0.115602); expected 326.1 (0.02) Passed bias filter: 678 (0.0415798); expected 326.1 (0.02) Passed Vit filter: 233 (0.0142892); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.57u 0.36s 00:00:01.93 Elapsed: 00:00:00.75 # Mc/sec: 3722.89 // Query: T040785_3 [L=976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.9 19.1 0.019 14.3 19.1 1.2 1 DUF1510 Protein of unknown function (DUF1510) 0.032 12.4 34.8 0.047 11.9 34.8 1.1 1 CDC45 CDC45-like protein 0.14 11.9 5.9 0.2 11.3 5.9 1.1 1 SpoIIIAH SpoIIIAH-like protein 0.48 8.5 29.8 0.67 8.0 29.8 1.0 1 Nop14 Nop14-like family 0.82 8.1 33.0 1.3 7.5 33.0 1.2 1 TT_ORF1 TT viral orf 1 1.6 7.2 35.5 2.2 6.8 35.5 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 9.8 5.3 28.6 16 4.5 28.6 1.2 1 BUD22 BUD22 Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 19.1 8.2e-06 0.019 51 115 .. 30 94 .. 4 108 .. 0.43 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 8.2e-06 DUF1510 51 eeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevtee 115 eee+eee + e+ e++ee+ee e ee ++eeee+k eeee ++e +ee+e e ++ee++e++e+ T040785_3 30 EEEEEEEGEGEEGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEG 94 22333333333333333333333333333333333333333333333333333333333333332 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 34.8 2e-05 0.047 125 210 .. 30 120 .. 21 136 .. 0.38 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 2e-05 CDC45 125 aleeeeesdedd.....eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrky 210 + eeeee + ++ eeee + +e eeeeeee+++eeeedeee +++++ + +eeeeee+ee r+r+rrr+++++++ rrr++++rr+ T040785_3 30 EEEEEEEGEGEEgekeeEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRR 120 3333333332223322133333334444444444444444444444344433333333333333333333333312222222222222221 PP >> SpoIIIAH SpoIIIAH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 5.9 8.6e-05 0.2 18 86 .. 25 92 .. 18 140 .. 0.62 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 8.6e-05 XXXXXXXX..XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS SpoIIIAH 18 Ylnftedsgkkaaetagteeeesekaeigd.dkeeaessaasaeaesesetesesaekediassdedeed 86 ++ + e++ +++e +g+e+e++e++e g+ +++e+e+++++ +e+e e+e+e++e+++ ++++e+ee+ T040785_3 25 WFPYEEEE--EEEEGEGEEGEKEEEEEEGEgEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEE 92 55566665..444444444444444444443355555555666666666666666666666666665544 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 29.8 0.00029 0.67 345 419 .. 30 104 .. 14 131 .. 0.31 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00029 Nop14 345 eeeeededdfeedddlveseseeee.eeeeedeeeeedeeeee.eeeededdlsdleseeeeeedeleeelleeekk 419 eeeee+e + ee + +e+e+ee e ee ee+eeee+ eeee eee +e+++ + e+eeeeee+e ++ ++++ T040785_3 30 EEEEEEEGEGEEGE--KEEEEEEGEgEEGEEEEEEEKRREEEEdEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRR 104 22222222222222..2222222221222222222222222220222222222222222333333322222111111 PP >> TT_ORF1 TT viral orf 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 33.0 0.00054 1.3 25 62 .. 95 131 .. 72 134 .. 0.58 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00054 TT_ORF1 25 rrrrrrrrvRRRrrgrrrrrrrrrrrrrrrrkrkklil 62 rrrrrrrr RRRrr+rrrrrrrrrrrrr r + +l++ T040785_3 95 RRRRRRRR-RRRRRRRRRRRRRRRRRRRQARGKTQLSI 131 22222222.22222333333445555555666666666 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 35.5 0.00094 2.2 100 190 .. 31 122 .. 8 132 .. 0.36 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.00094 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS MIP-T3 100 eeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekeke.kekkkkkekdrekekererekaserekkekkkkdsknk 190 ee++++g++ee +ke+++ee + +e +e e+e++r+++ee +e+ +++e+++ +e ++++e+ r + ++r r + + r ++++++ ++ + T040785_3 31 EEEEEEGEGEEGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGeEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRRRQ 122 33333333333333332232222222222223333333333222222222222122222222222222222222222222222222122222 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 28.6 0.007 16 172 252 .. 32 102 .. 19 132 .. 0.24 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.007 BUD22 172 eeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyneetdeesseesdssdsse 252 eee+e++ + e e++e++ee e e+ ++e++ee+ ++ee++e+e ++e+e+e +ee++ee++e +++ +++ T040785_3 32 EEEEEGEGE-EGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEG---------EEEEEGEGEEEEEEEEEEGRRRRRRRR 102 111111111.11111111111111111111111111111111111.........111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1201 (0.0736539); expected 326.1 (0.02) Passed bias filter: 533 (0.0326874); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 73 (0.00447688); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.67u 0.45s 00:00:02.12 Elapsed: 00:00:00.83 # Mc/sec: 3364.06 // Query: T370715_1 [L=1231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 540 (0.0331166); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 6403.06 // Query: T370715_2 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.63 # Mc/sec: 5585.43 // Query: T370715_3 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.60 # Mc/sec: 5864.70 // Query: T156475_1 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.64 # Mc/sec: 9749.17 // Query: T156475_2 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.67 # Mc/sec: 9312.64 // Query: T156475_3 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 8913.53 // Query: T261639_1 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 4784.63 // Query: T261639_2 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 5502.33 // Query: T261639_3 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5890.24 // Query: T069798_1 [L=551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 2814.85 // Query: T069798_2 [L=551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-25 88.1 3.3 1.6e-09 38.1 0.0 4.9 5 Ig_3 Immunoglobulin domain 4.6e-21 74.8 0.3 3.1e-08 33.7 0.1 4.3 4 Ig_2 Immunoglobulin domain 2.7e-10 40.2 0.0 0.003 17.6 0.0 4.5 4 ig Immunoglobulin domain 7.8e-07 29.2 0.0 4.1e-06 26.9 0.0 2.1 2 fn3 Fibronectin type III domain 4.9e-05 23.2 0.1 0.71 9.8 0.0 4.1 3 I-set Immunoglobulin I-set domain 0.00039 20.3 11.5 2.3 8.2 0.0 5.6 5 C2-set_2 CD80-like C2-set immunoglobulin domain ------ inclusion threshold ------ 0.018 15.0 0.8 11 6.1 0.0 3.3 3 V-set Immunoglobulin V-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.0 2.5e-09 5.8e-06 1 79 [] 50 122 .. 50 122 .. 0.85 2 ! 38.1 0.0 6.7e-13 1.6e-09 1 79 [] 142 213 .. 142 213 .. 0.91 3 ! 8.4 0.2 0.0012 2.9 16 49 .. 244 275 .. 230 298 .. 0.66 4 ! 11.6 0.0 0.00013 0.3 16 62 .. 328 368 .. 319 386 .. 0.60 5 ? -3.9 0.0 7 1.6e+04 27 37 .. 400 411 .. 395 420 .. 0.67 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 2.5e-09 EEE--CCCSEEEEETTS-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstvvtegesvtLtCeaegnppp.titWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kP++ +++ s eg sv+ tC + + +p t+ W++ + + + ++ ++++ v++++ G Y C+AsN T069798_2 50 KPQVRLSNPSP--VEGASVVATCAVREGTEPvTFAWQHRAPR--GLGEA---LVGVTEPLFQLDPVNRTHLGWYMCSASN 122 8****888777..5***********8888888******9985..32223...46888899*******************9 PP == domain 2 score: 38.1 bits; conditional E-value: 6.7e-13 EEE--CCCSEEE.....EETTS-EEE----EEES--EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstv.....vtegesvtLtCeaegnppptitWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kPvIt +p + + e e+vtL+C a++npp ++ W+++ + +++t + +++i ++ + ++G YtC A+N T069798_2 142 KPVITMEPLGLTeegfwASEREEVTLSCLAASNPPSHYVWLRDHT---QVHT---------GPTYVIARAGRVHTGLYTCLARN 213 8****999998889999*************999999*********...5334.........4699******************9 PP == domain 3 score: 8.4 bits; conditional E-value: 0.0012 TS-EEE----.EEES--EEEEEE..-...TTSS-E CS Ig_3 16 gesvtLtCea.egnppptitWykngkklssnstss 49 e vtL C + +g pp +++W ++ +++t + T069798_2 244 PEAVTLLCAWpGGLPPAQLQWEGPQG---PGPTAP 275 468*******5555555*****9999...555553 PP == domain 4 score: 11.6 bits; conditional E-value: 0.00013 TS.-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEEE CS Ig_3 16 ge.svtLtCeaegnppp.titWykngkklssnstsssissegssssLti 62 g+ ++L+Ce+ g+ pp t+ W+ ++++ + ++ss +++ T069798_2 328 GDqFIMLSCEWPGGEPPaTLGWLDEQQQ--PL--G----GSSSSMAVHL 368 442567*****6666666*******995..31..1....1223333344 PP == domain 5 score: -3.9 bits; conditional E-value: 7 EES--.EEEEEE CS Ig_3 27 gnppp.titWyk 37 g+p+p ++t ++ T069798_2 400 GYPAPpNVTISR 411 777777777655 PP >> Ig_2 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.0 0.00017 0.4 1 67 [. 50 124 .. 50 134 .. 0.80 2 ! 33.7 0.1 1.3e-11 3.1e-08 1 74 [. 142 222 .. 142 228 .. 0.86 3 ! 12.2 0.0 7.1e-05 0.17 15 66 .. 245 300 .. 232 306 .. 0.80 4 ! 12.7 0.0 4.7e-05 0.11 11 64 .. 325 385 .. 315 399 .. 0.79 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00017 Ig_2 1 kpvlrpsptvvtegspvtLtCsas.gnpppkyqwykgg.....eain.ssqn.ffinavsaedsgtYtCrasntk 67 kp+ r s+ eg +v tC++ g +p+++ w++ ea+ + f + v+ ++ g Y C+asn+ T069798_2 50 KPQVRLSNPSPVEGASVVATCAVReGTEPVTFAWQHRAprglgEALVgVTEPlFQLDPVNRTHLGWYMCSASNSV 124 688888888889**********9989999******88887777665543433466788**************965 PP == domain 2 score: 33.7 bits; conditional E-value: 1.3e-11 Ig_2 1 kpvlrpsp...tv....vtegspvtLtCsasgnpppkyqwykggeainssqnffinavsaedsgtYtCrasntkgsevsrp 74 kpv++ +p t+ +e+++vtL+C a +npp y w ++++ + +++ ++i ++ + g YtC a+n++ +++++ T069798_2 142 KPVITMEPlglTEegfwASEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYVIARAGRVHTGLYTCLARNSYLDTRTQT 222 6888888877655777789*********************************888*****************987665544 PP == domain 3 score: 12.2 bits; conditional E-value: 7.1e-05 Ig_2 15 spvtLtCsas.gnpppkyqwykggeainssqn...ffinavsaedsgtYtCrasnt 66 + vtL C+++ g pp+++qw + + ++ ++ + a+++ ++ +tC+ +++ T069798_2 245 EAVTLLCAWPgGLPPAQLQWEGPQGPGPTAPSnvtWSHAAAQLPSGSVFTCTGQHP 300 789*******77888*******99999988775443447788999999***98875 PP == domain 4 score: 12.7 bits; conditional E-value: 4.7e-05 Ig_2 11 vtegspv.tLtCsas.gnpppkyqwykgg.eainssqn...ffinavsaedsgt.YtCras 64 t g+ + L+C+++ g pp+++ w + +++ s + +++++++++ +g+ +tCr + T069798_2 325 ATMGDQFiMLSCEWPgGEPPATLGWLDEQqQPLGGSSSsmaVHLLQAQEDLAGReFTCRGT 385 5556655378*****667779****9777699995444466788**************975 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 1.3e-06 0.003 10 77 .. 62 123 .. 56 126 .. 0.94 2 ! 10.2 0.1 0.00025 0.59 9 77 .. 160 214 .. 158 224 .. 0.84 3 ? -1.0 0.0 0.78 1.8e+03 67 76 .. 289 299 .. 273 306 .. 0.62 4 ! 5.7 0.0 0.0062 15 16 76 .. 334 386 .. 326 391 .. 0.88 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.3e-06 TTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 10 eGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 eG s+ tC v+++t+p+++ W++ + ++ ++ +++++v + + G Y+C ++ns T069798_2 62 EGASVVATCAVREGTEPVTFAWQHRAPRGLGEAL------VGVTEPLFQLDPVNRTHLGWYMCSASNS 123 6889999***************************......999999********************98 PP == domain 2 score: 10.2 bits; conditional E-value: 0.00025 ETTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 9 leGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 +e e +tL+C + +++p ++ W ++ ++ +++ + i ++ + ++G YtC + ns T069798_2 160 SEREEVTLSCLAA-SNPPSHYVWLRDHTQVHTGPT-------------YVIARAGRVHTGLYTCLARNS 214 67899********.************999999988.............777788888888888877775 PP == domain 3 score: -1.0 bits; conditional E-value: 0.78 -E.EEEEEEEE CS ig 67 aG.tYtCevnn 76 +G +tC++++ T069798_2 289 SGsVFTCTGQH 299 34456666665 PP == domain 4 score: 5.7 bits; conditional E-value: 0.0062 EEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-E.EEEEEEEE CS ig 16 LtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaG.tYtCevnn 76 L+C+ +++p+++ W e+q+ ++ +s +++ +++e+ aG ++tC++ + T069798_2 334 LSCEWPGGEPPATLGWLDEQQQPLGGSS---------SSMAVHLLQAQEDLAGrEFTCRGTH 386 7888888999999999999999999988.........9999*****************9988 PP >> fn3 Fibronectin type III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.1 1.1 2.6e+03 17 37 .. 261 280 .. 260 289 .. 0.68 2 ! 26.9 0.0 1.7e-09 4.1e-06 1 85 [] 402 493 .. 402 493 .. 0.86 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 1.1 EEEEE-CSSSSSTECEEEEEE CS fn3 17 tvsWeppkdgggpitgYevey 37 +++We p +g gp +v++ T069798_2 261 QLQWEGP-QGPGPTAPSNVTW 280 7899999.5666655555555 PP == domain 2 score: 26.9 bits; conditional E-value: 1.7e-09 TSBSEEEEEEE....TTSEEEEEEE-CSSSSSTECEEEEEEEETTSSS.....TEEEEEECSTCSEEEEESSSTTEEEEEEEEEEETTEEEEEE CS fn3 1 saPsnlsvsev....tstsltvsWeppkdgggpitgYeveyrekgsee.....ewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 +aP n+++s ++++++W g g++tg+ v+ + + + e+ ++ + ++ l gL pg Y +r+ a+n+++ g++s T069798_2 402 PAPPNVTISRLtygrHRREVQLQWAIL--GPGNLTGFLVQRKASALGPgagawETAASDIEPESRGRRLGGLDPGVLYAFRILALNHHTAGHPS 493 6899999999977777899********..9***********777666677876555555777777**************************998 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.0 0.0026 6 14 82 .. 62 127 .. 52 136 .. 0.77 2 ! 9.8 0.0 0.00031 0.71 13 87 .. 160 225 .. 155 228 .. 0.70 3 ? -1.7 0.0 1.2 2.9e+03 18 41 .. 332 357 .. 324 372 .. 0.69 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0026 TTS-EEEEEEE.ECSSS-EEEEEET.TCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSEEE CS I-set 14 eGesvelectv.eGepepsvsWakd.gselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsagka 82 eG sv +c v eG+++ ++ W+++ + l + v v+e + ++ v++ G Y c a+ns+ + T069798_2 62 EGASVVATCAVrEGTEPVTFAWQHRaPRGLGE---ALVGVTE--PLFQLDPVNRTHLGWYMCSASNSVNRL 127 78899999999446788899999985555553...4555555..6799*******************8765 PP == domain 2 score: 9.8 bits; conditional E-value: 0.00031 ETTS-EEEEEEEECSSS-EEEEEETTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEET.SEEE.EEEEE CS I-set 13 seGesvelectveGepepsvsWakdgselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatns.agka.eakae 87 se e+v+l+c + +p+ + W++d +++++ ++ I ++ + +G Ytc a+ns + ++ +++++ T069798_2 160 SEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYV-----------IARAGRVHTGLYTCLARNSyLDTRtQTTVQ 225 677889999999999999999999988888765555...........555557778999999999943333033444 PP == domain 3 score: -1.7 bits; conditional E-value: 1.2 EEEEEEEE.CSSS-EEEEEET.TCB- CS I-set 18 velectve.GepepsvsWakd.gsel 41 + l+c+ Gep+ + W+ + +++l T069798_2 332 IMLSCEWPgGEPPATLGWLDEqQQPL 357 56777765156889999*99955555 PP >> C2-set_2 CD80-like C2-set immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.2 0.0 0.00098 2.3 6 37 .. 51 85 .. 47 95 .. 0.81 2 ! 5.0 0.0 0.0098 23 9 42 .. 156 188 .. 143 221 .. 0.76 3 ? 4.3 0.5 0.017 40 17 38 .. 246 267 .. 232 286 .. 0.81 4 ? -1.2 0.0 0.85 2e+03 74 86 .. 290 302 .. 278 305 .. 0.80 5 ! 5.2 0.4 0.0087 20 19 42 .. 333 356 .. 323 389 .. 0.78 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00098 SSSEEETT...-SEEEEEEEEEEEEBS--EEEEEE CS C2-set_2 6 naslleae...eneevvatCvsaggkPapqitWyl 37 ++ +l+++ e++ vvatC +++g +++ +W+ T069798_2 51 PQVRLSNPspvEGASVVATCAVREGTEPVTFAWQH 85 44555555578899*******************86 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0098 EEETT-SEEEEEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 9 lleaeeneevvatCvsaggkPapqitWylngkpl 42 +a e eev++ C a ++P+ + W+++ ++ T069798_2 156 GFWASEREEVTLSC-LAASNPPSHYVWLRDHTQV 188 34444899******.6778999******998877 PP == domain 3 score: 4.3 bits; conditional E-value: 0.017 EEEEEEEEEEEBS--EEEEEET CS C2-set_2 17 evvatCvsaggkPapqitWyln 38 v++ C gg P++q++W + T069798_2 246 AVTLLCAWPGGLPPAQLQWEGP 267 567789999**********875 PP == domain 4 score: -1.2 bits; conditional E-value: 0.85 T-EEEEEEEETTC CS C2-set_2 74 gqsltCsvsyeal 86 g+ +tC +++al T069798_2 290 GSVFTCTGQHPAL 302 77899*9999987 PP == domain 5 score: 5.2 bits; conditional E-value: 0.0087 EEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 19 vatCvsaggkPapqitWylngkpl 42 + C gg+P++++ W+ + ++ T069798_2 333 MLSCEWPGGEPPATLGWLDEQQQP 356 56788899*********9887764 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 0.96 2.2e+03 76 98 .. 104 125 .. 99 136 .. 0.72 2 ? 6.1 0.0 0.0048 11 5 48 .. 156 198 .. 153 203 .. 0.81 3 ? 5.6 0.1 0.0066 15 84 108 .. 203 228 .. 197 229 .. 0.82 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.96 EESSESGGG-EEEEEEEESSSEE CS V-set 76 tiqnlqlsDsGtYfCavvssgeg 98 ++ +++ + G Y C+ s++ + T069798_2 104 QLDPVNRTHLGWYMCSA-SNSVN 125 5678899999*****95.44444 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0048 EEEEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS..CEEEEEEE CS V-set 5 svtvaeGesvtLsCtlssseseeslsiyWyrqppgk..epeelily 48 +++e e+vtLsC s+ + + W+r+ ++ +p+++i++ T069798_2 156 GFWASEREEVTLSCLAASN---PPSHYVWLRDHTQVhtGPTYVIAR 198 5789999*******77766...999999999999888888888876 PP == domain 3 score: 5.6 bits; conditional E-value: 0.0066 G-EEEEEEEESSSEEE.EEEEEEEEE CS V-set 84 DsGtYfCavvssgegv.fgsgtrLtV 108 ++G Y+C ++s+ ++ ++++++Lt+ T069798_2 203 HTGLYTCLARNSYLDTrTQTTVQLTI 228 89******9666666659****9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 2717.79 // Query: T069798_3 [L=550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 2458.53 // Query: T006426_1 [L=2444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2444 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1241 (0.076107); expected 326.1 (0.02) Passed bias filter: 668 (0.0409665); expected 326.1 (0.02) Passed Vit filter: 124 (0.00760456); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.40s 00:00:01.95 Elapsed: 00:00:00.65 # Mc/sec: 10756.72 // Query: T006426_2 [L=2443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1097 (0.0672758); expected 326.1 (0.02) Passed bias filter: 593 (0.036367); expected 326.1 (0.02) Passed Vit filter: 125 (0.00766589); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.44s 00:00:02.38 Elapsed: 00:00:00.81 # Mc/sec: 8628.40 // Query: T006426_3 [L=2443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 825 (0.0505949); expected 326.1 (0.02) Passed bias filter: 464 (0.0284558); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.43s 00:00:01.89 Elapsed: 00:00:00.70 # Mc/sec: 9984.30 // Query: T089049_1 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1603.94 // Query: T089049_2 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-11 43.2 0.3 4e-11 42.7 0.3 1.1 1 DDE_Tnp_1_7 Transposase IS4 Domain annotation for each model (and alignments): >> DDE_Tnp_1_7 Transposase IS4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.7 0.3 2.4e-15 4e-11 50 123 .. 246 318 .. 243 320 .. 0.95 Alignments for each domain: == domain 1 score: 42.7 bits; conditional E-value: 2.4e-15 DDE_Tnp_1_7 50 mglvrlpsvedyWstkdfygnpllseiMsreRFeeilsalhladnstkkaekdklkkvrelidslnermqkvyr 123 ++++++++ +W+++++ +n l+ ++M+ + Fe+i+s+lh+adn++ ++ d++ k+++li++ ner++++++ T089049_2 246 NDYISVHRRHTFWEKRTDAHNILVCAAMRCDHFETIFSNLHVADNANLDP-MDEFSKLQPLISKRNERCMNLFS 318 568899999**************************************999.9*******************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 1625.91 // Query: T089049_3 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-08 33.7 0.0 3e-08 33.3 0.0 1.1 1 DDE_Tnp_1_7 Transposase IS4 Domain annotation for each model (and alignments): >> DDE_Tnp_1_7 Transposase IS4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 0.0 1.8e-12 3e-08 1 47 [. 197 243 .. 197 244 .. 0.97 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 1.8e-12 DDE_Tnp_1_7 1 spvelFelflpdkilerivkatNayakqkkkwleltaeElkaFlGll 47 +p+e+ e fl+dk++e+iv+++N++a++k++++ lt++E+k+FlG+ T089049_3 197 TPTEILERFLDDKVVELIVRYSNLHARSKGVQRGLTSSEFKCFLGII 243 799******************************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 1599.25 // Query: T346746_1 [L=2064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 8088.70 // Query: T346746_2 [L=2064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-64 216.3 8.9 2e-57 194.6 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.6 5.4 1.2e-61 2e-57 179 299 .. 1041 1161 .. 1032 1169 .. 0.94 2 ! 23.0 0.1 1.7e-09 2.8e-05 340 367 .. 1204 1233 .. 1202 1234 .. 0.96 Alignments for each domain: == domain 1 score: 194.6 bits; conditional E-value: 1.2e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346746_2 1041 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1133 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346746_2 1134 GKVNHKWKPIRLTADLSAETLQARREWG 1161 ***************************8 PP == domain 2 score: 23.0 bits; conditional E-value: 1.7e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346746_2 1204 FVTTRPALQELLKEapNMERKNRYQPLQKH 1233 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 9523.80 // Query: T346746_3 [L=2064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-35 121.3 1.9 6.5e-35 120.5 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 4.9e-14 51.8 14.6 2.6e-07 29.7 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.025 14.3 0.1 0.058 13.2 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.5 1.9 1.2e-38 6.5e-35 31 210 .. 1645 1837 .. 1636 1855 .. 0.93 Alignments for each domain: == domain 1 score: 120.5 bits; conditional E-value: 1.2e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346746_3 1645 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1742 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346746_3 1743 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 1837 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 2.9 4.8e-11 2.6e-07 6 83 .. 896 981 .. 891 993 .. 0.79 2 ! 27.6 3.9 2.1e-10 1.1e-06 145 182 .. 1007 1044 .. 1007 1048 .. 0.96 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 4.8e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346746_3 896 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 981 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.6 bits; conditional E-value: 2.1e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346746_3 1007 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1044 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 1.1e-05 0.058 24 48 .. 964 988 .. 962 991 .. 0.91 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.1e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346746_3 964 KLYQRLQELLSRIASLEKNVNDLME 988 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1121 (0.0687477); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.83 # Mc/sec: 7114.16 // Query: T119711_1 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-112 376.1 20.5 2.2e-110 368.9 20.5 2.4 1 Transposase_22 L1 transposable element 2.1e-06 27.4 0.5 7.4e-06 25.7 0.5 2.0 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.00065 19.8 0.0 0.0028 17.7 0.0 2.0 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 368.9 20.5 4e-114 2.2e-110 19 367 .. 165 487 .. 153 488 .. 0.91 Alignments for each domain: == domain 1 score: 368.9 bits; conditional E-value: 4e-114 XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXX CS Transposase_22 19 erstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellel 109 + Pt+e+sss at e++++++ f+elr+e+++++ +++elk ++++++ke + +k ++e + v + + l+el T119711_1 165 ISAFPTEEHSSSQAT--EQSWMENYFDELREEGFRRSvitNFSELKKDVRTHCKEAKnLEKRLDEWLTRINS------------VEKTLNYLMEL 245 45679**********..*******************8555799***********998777777775444333............22233479*** PP XXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT CS Transposase_22 110 ktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqsl.qviqdtvkrPnlrliGvdesed 202 kt ++e ++ + s+s d++eervs +ed+++e+++e k+rekr+k+++qsl i d vkrPnl liGv+es+ T119711_1 246 KTMAREHHDACT------------------SIS-S*FDQVEERVSVIEDQMNEMKQEEKFREKRVKRNKQSL*E-ICDCVKRPNLHLIGVPESDG 320 ********9999..................775.5559********************************9887.78****************** PP --HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHH CS Transposase_22 203 eqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek.GrvtlkGkPirltadlsaetlkarr 296 e+ +klen+l++ii+enfPnl+++an +iqei+r P+r++s+r+++rhiivr+tkv++k+k+l+a+r G vt kGkPirltad+saetl+arr T119711_1 321 ENATKLENTLQDIIQENFPNLARQANFQIQEIQRMPQRYSSRRTTPRHIIVRFTKVEMKEKMLRAAR-E*GWVTHKGKPIRLTADISAETLQARR 414 ******************************************************************9.5667*********************** PP HHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 297 ewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 ew+++++ilkek+fqPr++yPakls+i++Geik f +k++lrd+++trPal+++lk + er+++yq+l++ T119711_1 415 EWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTEKQMLRDFVTTRPALQEFLKKalNVERNNQYQPLQNL 487 ********************************************************999************95 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.5 1.4e-09 7.4e-06 17 118 .. 635 744 .. 621 745 .. 0.78 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 1.4e-09 Exo_endo_phos_2 17 nllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkeg.ptfeseng..ssiiDltltsdnlak 102 +++ l++l ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l + + k++ tf + + iD ++ s+ l+ T119711_1 635 FIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSMRHKvNKDIQDLNSALHQANLIDIyrtfHP-KSTeYTFFPAPHrtYLKIDHIVGSKALLS 726 455666677777765.8**************998888899999*********999966777444.44448887766644688************ PP Exo_endo_phos_2 103 s..leleeedlgSDHrpi 118 + ++ ++++SDH++i T119711_1 727 KckRTEIITNSLSDHSAI 744 *986667799*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 5.2e-07 0.0028 2 113 .] 524 741 .. 523 741 .. 0.68 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 5.2e-07 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.............................EEEEEEESSSTTSSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla.............................dadaskfgtgkgqggvav 68 t Nvng ++++ ++ +la+++++ + ++ + s ++++ ++d++ ++ +++++g + T119711_1 524 TLNVNG----LNSPIKRHRLANWIESR-PISVLYSG----DPSHMQRHT*aqnkgmeedlpsk*ktkkkagvailvsdKTDFKPTKIKRDKEGHYI 610 778888....66677778888888544.43333332....22222233355555555555566655544444444444334444444444555555 PP EECSEEEEE...............................EEEEEE-SS............................................... CS xxxxxxxxx...............................xxxxxxxxx............................................... RF Exo_endo_phos 69 lsrfpltsl...............................vivlGDfNa............................................... 86 +++ ++++ i++GDfN+ T119711_1 611 MVKGSIQQEltilnicapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrsmrhkvnkdiqdlnsalhqanlidiyrtfhpksteytffp 706 5555554448889999999999999999999999999999*********99999999999999999999999999999999999999999999999 PP .......-BEEEEEEHHHHTTEEEEEEECCH.SSB CS .......xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 .......rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + ++ SDH T119711_1 707 aphrtylKIDHIVGSKALLSKCKRTEIITNSlSDH 741 999998888******96666655555555557999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 826 (0.0506562); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.75 # Mc/sec: 4459.08 // Query: T119711_2 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 5761.12 // Query: T119711_3 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-23 82.3 1.9 4.8e-23 81.7 1.9 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.7 1.9 3e-27 4.8e-23 4 131 .. 1036 1166 .. 1033 1168 .] 0.94 Alignments for each domain: == domain 1 score: 81.7 bits; conditional E-value: 3e-27 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 k+ +++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +k F++++ ++ l++l+++++ T119711_3 1036 KK-NNFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIhksiNVIHHINRTKDKNHMIISIDAEKVFNKIKQPFMLKTLNKLGI 1132 33.69**************************************************99999999999999***************************** PP T.........................TEEEEESB CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkg 131 + + +++i++++ ++++++ +n ++ e + k+g T119711_3 1133 DGMYLKIIRAIYDKPTANIILNRQKLEAFLLKTG 1166 *********************9998788877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 760 (0.0466086); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 5140.69 // Query: T076683_1 [L=1195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 5604.41 // Query: T076683_2 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.62 # Mc/sec: 5509.40 // Query: T076683_3 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 5889.36 // Query: T138098_1 [L=2739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 13747.04 // Query: T138098_2 [L=2739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.74 # Mc/sec: 10588.94 // Query: T138098_3 [L=2739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 11695.24 // Query: T069065_1 [L=2341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.7 0.0 2e-06 27.9 0.0 1.4 1 RVP Retroviral aspartyl protease 0.0002 20.8 0.0 0.00033 20.1 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.0 2.4e-10 2e-06 8 100 .. 1107 1194 .. 1106 1195 .. 0.86 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 2.4e-10 EEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 8 kvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++ ++ k + +l+ +++ +s + P + a+ ++ Gi g+ ++ ++ +++++ +k++ +s+l++p++pv+llG d+L+kl + L T069065_1 1107 TLTVERKSVPFLVNMEVTHCTLSSFQGPVS----LASITVVGIDGQASKPLKTL-QLWCQLRKHSFMRSFLVIPTCPVPLLGQDILTKLSASL 1194 567788888899999999999999999999....9***********98887777.5666677777778*********************9988 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.0 4.1e-08 0.00033 18 145 .. 1308 1395 .. 1296 1399 .. 0.74 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 4.1e-08 -THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET................. CS RVT_1 18 dykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfs 115 d+ ++n+ + +++ p+ + l+ + ++ ++++ lDlk aF+++pl+ +++l+af+ ++ T069065_1 1308 DLCLINQTVLP---------IHPVVPNPYTL----------LS--SIPPSTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------- 1369 55555555555.........55555555555..........11..2456779****************************988............... PP ........TEEEEESB--ST-TTHHHHHHH CS RVT_1 116 vrvngeesegryekkglpqGsvlSPllfnl 145 + ++ ++++lpq ++ SP fn T069065_1 1370 ----DTHQAQQITWAVLPQSITDSPHYFNQ 1395 ....33449999**************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 9174.25 // Query: T069065_2 [L=2340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 9170.33 // Query: T069065_3 [L=2340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-17 64.5 0.0 1.5e-17 64.0 0.0 1.2 1 RNase_H RNase H 1e-06 28.4 3.2 2.9e-06 27.0 3.2 1.9 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.023 14.5 0.3 0.069 13.0 0.3 1.8 1 zf-CCHC_3 Zinc knuckle 0.056 13.6 0.0 0.12 12.6 0.0 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.16 12.2 0.0 0.31 11.3 0.0 1.4 1 zf-H3C2 Zinc-finger like, probable DNA-binding 0.22 11.1 0.0 0.43 10.2 0.0 1.4 1 RVT_3 Reverse transcriptase-like 0.73 9.5 10.8 0.068 12.8 4.2 2.7 3 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.0 0.0 6.4e-21 1.5e-17 3 142 .. 1585 1729 .. 1583 1730 .. 0.80 Alignments for each domain: == domain 1 score: 64.0 bits; conditional E-value: 6.4e-21 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETT CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttse 94 +++++tDGs+ + +++++ag+ ++++ + +++l++ +t ++aE A+++aL a + +niytDSkY+++ i++ h ++ t++ T069065_3 1585 DHTWFTDGSSTRPncHSPAKAGYaIVSST-SVIDATALPPSTTSQQAEPAALTQALTlA--KRLGINIYTDSKYAFH-ILH-HHAVi*A-EGVFLTTQ 1676 679******9876688888****555544.5577788999*****************77..8899************.665.3555454.45545666 PP SSBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 95 qkpvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++ ++n++l+++l ++a +k+ + h+kgH+ + gN aD++A++aa T069065_3 1677 GSSIINASLIKTLLKAALlPKEAGVIHCKGHQKAsdpfALGNAYADKVARQAA 1729 667***8888877666655************555568878***********98 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 3.2 1.3e-09 2.9e-06 2 18 .] 1018 1034 .. 1017 1034 .. 0.94 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 1.3e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T069065_3 1018 ACYKCQKSGHWAKECPQ 1034 7***************7 PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.3 3e-05 0.069 6 22 .. 1018 1034 .. 1015 1041 .. 0.88 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 3e-05 zf-CCHC_3 6 aCQkClkkGHwtYECkn 22 aC kC k GHw+ EC++ T069065_3 1018 ACYKCQKSGHWAKECPQ 1034 8**************96 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 5.1e-05 0.12 1 38 [. 1789 1826 .. 1789 1827 .. 0.97 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.1e-05 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 H+l H G++ l ll+ + ++ +k +++e++s+C+ C T069065_3 1789 HNLFHVGYKLLARLLEPLISFPSRKSILKEITSQCSIC 1826 9999********************************** PP >> zf-H3C2 Zinc-finger like, probable DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00013 0.31 25 89 .. 1766 1827 .. 1757 1830 .. 0.88 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00013 TEEEETTEEEE-HHHHHHHHHHHHHHH---HHHHHHHHHTST-SSEETTHHHHHHHHHHT-HHHH CS zf-H3C2 25 kywvyqgkpvmpdqftfelldflhqlthlsfskmkallershspyymlnrdrtlknitetckaca 89 k+++ qgk ++p + +l +h+l h+ + + lle s + r lk+it c c T069065_3 1766 KWFLDQGKYLLPASQAHSILSSFHNLFHVGYKLLARLLEPLIS---FPSRKSILKEITSQCSICH 1827 78899**************************999989987655...458999**********996 PP >> RVT_3 Reverse transcriptase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.0 0.00019 0.43 14 61 .. 1604 1648 .. 1592 1662 .. 0.80 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00019 RVT_3 14 gagvvirdpngevllagaeklenlataeeaEalAlleGLqlAlklgir 61 +ag++i + + v+ a a l + +t+++aE Al ++L+lA++lgi+ T069065_3 1604 KAGYAIVS-STSVIDATA--LPPSTTSQQAEPAALTQALTLAKRLGIN 1648 56666664.555777777..6699**********************85 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.2 1.1 2.6e+03 12 22 .. 236 246 .. 236 249 .. 0.81 2 ? -2.6 0.0 1.9 4.4e+03 23 33 .. 289 299 .. 286 301 .. 0.78 3 ? 12.8 4.2 2.9e-05 0.068 1 18 [. 1015 1032 .. 1015 1033 .. 0.97 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 1.1 BS-TTT---SE CS zf-CCHC_5 12 kHwardChskf 22 +H + Chs++ T069065_3 236 THGLSHCHSRT 246 577799***97 PP == domain 2 score: -2.6 bits; conditional E-value: 1.9 EGGGEE---XX CS zf-CCHC_5 23 dknGnpLsane 33 nG+ Ls+++ T069065_3 289 VYNGYKLSGLR 299 569******87 PP == domain 3 score: 12.8 bits; conditional E-value: 2.9e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k Hwa++C T069065_3 1015 PPGACYKCQKSGHWAKEC 1032 89**************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.60 # Mc/sec: 11157.24 // Query: T368931_1 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.51 # Mc/sec: 4005.16 // Query: T368931_2 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 3242.27 // Query: T368931_3 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 3094.90 // Query: T295120_1 [L=1433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 6948.42 // Query: T295120_2 [L=1432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 6943.57 // Query: T295120_3 [L=1432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 5937.26 // Query: T218107_1 [L=910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-17 63.9 2.1 1.9e-17 63.4 1.3 1.6 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.4 1.3 1.2e-21 1.9e-17 1 89 [. 202 299 .. 202 302 .. 0.95 2 ? -2.8 0.0 0.2 3.3e+03 210 222 .] 441 455 .. 416 455 .. 0.70 Alignments for each domain: == domain 1 score: 63.4 bits; conditional E-value: 1.2e-21 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++R+isl+++d k+l+k++ +r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l T218107_1 202 IPKPGrdttkKENFRLISLMNIDAKILSKILENRIQQHIKKLIHHDQVGFIPGMQGWFNIyksiNVIQHINRTKDKNHTIISIDAEKAFDKIQQRFML 299 899999999999***************************************************99999999999999***************988765 PP == domain 2 score: -2.8 bits; conditional E-value: 0.2 ....ESSEEETTEEE CS RVT_1 210 g..kseevkyLGvtl 222 + s+++kyLG++l T218107_1 441 FtiASKRIKYLGIQL 455 1457999*****986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 3944.48 // Query: T218107_2 [L=910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4005.16 // Query: T218107_3 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-23 83.9 0.0 1.7e-23 83.2 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.2 0.0 1.1e-27 1.7e-23 89 208 .. 298 427 .. 294 457 .. 0.92 Alignments for each domain: == domain 1 score: 83.2 bits; conditional E-value: 1.1e-27 GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH CS RVT_1 89 lrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee 179 ++l++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++ SPllfn++++ l r +r++ ++v+l+++ DDi+++ +++ T218107_3 298 AKTLNKLGIDGMYLKIIRAIYDKPTAHIILNGQKLEAFPLKTGTRQGCPFSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFTDDIIVYLENPII 397 578999***************************99*********************************99***************************555 PP .HHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 180 .lqelleaveewlkesglkinpeKtklvlf 208 +q+ll+ ++++ k sg+kin +K++++l+ T218107_3 398 sAQNLLKLISNFSKVSGYKINVQKSQAFLY 427 5***************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 4728.17 // Query: T313951_1 [L=699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.61 # Mc/sec: 3278.23 // Query: T313951_2 [L=699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-12 46.6 0.0 3.5e-12 45.8 0.0 1.3 1 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP d ------ inclusion threshold ------ 0.12 12.5 0.1 0.24 11.5 0.1 1.4 1 Defensin_3 Defensin-like peptide family Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.8 0.0 4.3e-16 3.5e-12 6 57 .. 267 319 .. 265 323 .. 0.97 Alignments for each domain: == domain 1 score: 45.8 bits; conditional E-value: 4.3e-16 ETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHH CS RRM_1 6 LppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeskedAekAle 57 Lp++v+++ ++++F+k+G ++ + +++ +tg +kgfafV+Fe+ke+A+kA+e T313951_2 267 LPKNVNHSWIERVFGKWGNVVYVGIPHYkSTGDPKGFAFVKFETKEQAAKAIE 319 8**************************************************97 PP >> Defensin_3 Defensin-like peptide family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.1 3e-05 0.24 14 29 .. 149 164 .. 147 167 .. 0.93 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 3e-05 EETT-TTS-B-TTEE- CS Defensin_3 14 RdKdevNCkeialadC 29 R K+e+NC++ + C T313951_2 149 RKKEERNCRPTLWELC 164 99***********999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 3225.36 // Query: T313951_3 [L=699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 3845.62 // Query: T099497_1 [L=820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.44 # Mc/sec: 5331.55 // Query: T099497_2 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.18 10.7 1.2 9.7 5.0 0.1 2.2 2 DUF4831 Domain of unknown function (DUF4831) Domain annotation for each model (and alignments): >> DUF4831 Domain of unknown function (DUF4831) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.0006 9.7 5 32 .. 60 87 .. 58 93 .. 0.95 2 ? 4.2 0.2 0.001 16 5 44 .. 306 345 .. 304 366 .. 0.81 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0006 DUF4831 5 YvLPkteleleveaekttytpGefakYA 32 Y+LP+t+ ++++ ++ t t G+ + YA T099497_2 60 YALPHTHTDIHILMHSRTLTHGHTHPYA 87 9**********************99999 PP == domain 2 score: 4.2 bits; conditional E-value: 0.001 DUF4831 5 YvLPkteleleveaekttytpGefakYAeryLrlknvste 44 Y+LP+t+++ ++ ++ +t + G+ + Y+ +++ + + T099497_2 306 YTLPHTHMDTHILMHSQTLKQGHTYPYTLPHTHMDTHILT 345 9*********************999998666666655555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 4881.29 // Query: T099497_3 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3604.65 // Query: T256188_1 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 9059.30 // Query: T256188_2 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.57 # Mc/sec: 10777.44 // Query: T256188_3 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 8929.88 // Query: T381523_1 [L=6341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.42s 00:00:02.42 Elapsed: 00:00:00.86 # Mc/sec: 21093.63 // Query: T381523_2 [L=6340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.066 13.3 0.0 0.12 12.4 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 7.5e-06 0.12 18 53 .. 2810 2845 .. 2805 2849 .. 0.89 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7.5e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381523_2 2810 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 2845 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.90u 0.36s 00:00:02.25 Elapsed: 00:00:00.90 # Mc/sec: 20152.96 // Query: T381523_3 [L=6340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.36s 00:00:02.22 Elapsed: 00:00:00.72 # Mc/sec: 25191.20 // Query: T316831_1 [L=7439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.33u 0.41s 00:00:02.74 Elapsed: 00:00:00.85 # Mc/sec: 25037.31 // Query: T316831_2 [L=7439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.28u 0.45s 00:00:02.73 Elapsed: 00:00:00.81 # Mc/sec: 26273.72 // Query: T316831_3 [L=7439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.42s 00:00:02.68 Elapsed: 00:00:00.79 # Mc/sec: 26938.88 // Query: T338694_1 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-23 80.9 0.0 1.3e-22 80.1 0.0 1.4 1 rve Integrase core domain 3.9e-09 36.7 0.0 6.7e-09 36.0 0.0 1.3 1 RNase_H RNase H 2.9e-06 26.8 0.0 4.4e-06 26.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.012 15.7 0.0 0.019 15.0 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.1 0.0 3.1e-26 1.3e-22 3 118 .. 1827 1937 .. 1825 1938 .. 0.94 Alignments for each domain: == domain 1 score: 80.1 bits; conditional E-value: 3.1e-26 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + ++ +y++v id+ s+li ++a++ e +++ vi+ l a+ + p ++ +Dng +y+s+ f++f+ ++i++ + p+ T338694_1 1827 EPNQLWQTDVTHVPEF--EKLKYVHVSIDTNSHLISTHALPGE-STQYVIKHLPLTSAFMRQ--PTKIKTDNGLAYASSLFQQFCHMWNIQHFTGIPY 1919 7*************55..556**********************.**********77777777..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 +pq +++vE + tlk++ T338694_1 1920 NPQRQAIVEHVHSTLKNR 1937 ****************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 1.6e-12 6.7e-09 3 85 .. 1070 1158 .. 1068 1199 .. 0.74 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 1.6e-12 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.........H CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.........k 85 +++++ DGs+ + +++++ag+ ++++ s++l++++t ++a L+A ++aL a ++ +vni tDSkY+++ +++ w T338694_1 1070 DHTWFIDGSSTRPncHSPAKAGYaIVSS-----TSTALPHPTTSQQAKLIASTQALTlA--KGLRVNIHTDSKYAFHILHHRAIIWaerfphyvrV 1158 579******9876578888****55553.....58999999***************977..99**************5554444445555555550 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.0 1.1e-09 4.4e-06 136 210 .. 328 402 .. 323 403 .. 0.93 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 1.1e-09 Gag_p30 136 keespaaflerlkeayrrytpydped.peqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 k e+p f+ l ++r +t d e +++ + + fi+qsa++irkk q+le ++ ++l++ a k++n re T338694_1 328 KYENPGQFMACLATTFRCFTALDSEG*EGR-LILHMHFITQSAPNIRKKHQKLESSPQTPQQELINLAFKMFNNRE 402 6799*******************9988876.5689**************************************998 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.0 0.0 4.8e-06 0.019 3 115 .. 1831 1943 .. 1829 1955 .. 0.82 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 4.8e-06 DDE_Tnp_IS240 3 swrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasayasalkelkregelfdevshvq....v 92 w+ D T v +k +Y+ +D ++ ++ + t+ +++ l + ++p +i tD ayas l ++++ +++++h + T338694_1 1831 LWQTDVTHVPEFEKLKYVHVSIDTNSHLISTHALPGESTQYVIKHLPLTSAFM-RQPTKIKTDNGLAYASSL---FQQFCHMWNIQHFTgipyN 1920 5999999999999*********************9999999999987776666.99************9864...5555557777777622224 PP DDE_Tnp_IS240 93 kylnnriEsdhrtlKkrlrptrg 115 + ++ ++E+ h+tlK+rl+ ++g T338694_1 1921 PQRQAIVEHVHSTLKNRLENKKG 1943 5677889**********988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11360.40 // Query: T338694_2 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-07 30.0 0.4 6e-07 28.5 0.4 1.8 1 IN_DBD_C Integrase DNA binding domain 3e-05 24.1 0.0 6.2e-05 23.1 0.0 1.4 1 RVP Retroviral aspartyl protease 0.00042 20.1 0.2 0.00042 20.1 0.2 2.2 3 GP41 Retroviral envelope protein 0.0007 19.7 0.0 0.0017 18.4 0.0 1.6 1 rve Integrase core domain ------ inclusion threshold ------ 0.012 15.5 0.6 0.032 14.1 0.6 1.6 1 Borrelia_orfX Orf-X protein Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 0.4 1.8e-10 6e-07 4 43 .. 1987 2024 .. 1985 2025 .. 0.95 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 1.8e-10 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvP 43 v wkd++s+ +GP+ +L++grG++c s + w+P T338694_2 1987 AVLWKDVNSNVCCGPNDLLMWGRGYACA--HTPSGPLWIP 2024 699*************************..999******9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.0 1.9e-08 6.2e-05 9 96 .. 539 623 .. 534 625 .. 0.80 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 1.9e-08 EEETTE..EEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCC CS RVP 9 vkiggk..yieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqkl 96 v ++g+ i l+DtGA++ ++ + P + a +++ Gi g+ + ++ ++++ ++++ s+l++p +pv+llG ++++ T338694_2 539 VTLTGEgkSIPCLIDTGATHLSLPSFQGPVS----FAPTTVVGIDGQAPKPLKTP-SLWCQLRQHSFMYSFLVIPICPVPLLGMKHINQI 623 44443344999********************....99**********96555555.4555556666667**************9988886 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 0.2 3.1 1e+04 135 180 .. 1425 1474 .. 1422 1491 .. 0.49 2 ? -1.8 0.9 0.63 2.1e+03 145 191 .. 1575 1611 .. 1562 1617 .. 0.75 3 ! 20.1 0.2 1.3e-07 0.00042 1 76 [. 2481 2556 .. 2481 2560 .. 0.87 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 3.1 .HHHHHGCHHHHHHHHHHHH...HHHHHHCHHHHHHHHHHH.XXXXX... CS GP41 135 qslannfkslnWvsyikltv...liiavgvalrvvlivlll.lPvlfksl 180 +sl ++++ l+W s l +++ + ++l+ lll +P l++sl T338694_2 1425 RSLLKWIEDLHWQSSPILQKvysNTFTLMNSYSLLLYSLLLsFPFLYHSL 1474 47888999999987532221000222222333344444433146666665 PP == domain 2 score: -1.8 bits; conditional E-value: 0.63 HHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX... CS GP41 145 nWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraev 191 +W+s ++ + + + + +lll P++f +l+ ++ q + + T338694_2 1575 DWIS-------LVLSILSPSIPVFLLLLGPCVF-CLVCQFIQSH--I 1611 4544.......788888888999999999****.9999888877..3 PP == domain 3 score: 20.1 bits; conditional E-value: 1.3e-07 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHH..HHE..CCSHHHCX CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlk..lrChanykliCvT 76 va +s++ +vq+at+v++l knv + l Q+ id k a + l+ + +G+ +l ++++ ++k iCvT T338694_2 2481 VAVASITESVQTATFVDNLAKNVSNQLLLQQGIDEKTLACLRTLDAASEYVGEWQDALAFRQQ*nWDW--EHKHICVT 2556 5789****************************************999999999999999888543555..67777776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 5.1e-07 0.0017 4 92 .. 1328 1412 .. 1325 1412 .. 0.82 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 5.1e-07 rve 4 pgelwqvDvtvgr.ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgi 92 p + wq+ +t+++ + + +yllv++ +f++++ ++++ +e +a +vi l + ++g p + sDn +++++ ++++ + lgi T338694_2 1328 PAQDWQINFTHMP*VRKL---KYLLVWVGTFTGWVQVFPTESE-KATVVISSLLSDIIPQFGL-PTSIQSDNRLAFINQVTQAVSQALGI 1412 677788888877666544...5*********************.7777777777777777777.***************99999998887 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.6 9.9e-06 0.032 56 80 .. 1828 1852 .. 1824 1876 .. 0.89 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 9.9e-06 Borrelia_orfX 56 litsgkqmlltflnldvlnmfmfll 80 li gkqml t lnl+ lnm+m+ l T338694_2 1828 LISYGKQMLHTSLNLKNLNMYMYPL 1852 899*******************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 10887.05 // Query: T338694_3 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 24.0 0.0 3.5e-05 23.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 0.016 15.1 3.8 0.047 13.7 3.8 1.8 1 zf-CCHC Zinc knuckle 0.039 13.5 5.7 0.1 12.2 5.7 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 0.0 6.4e-09 3.5e-05 38 220 .. 752 896 .. 713 898 .. 0.69 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 6.4e-09 -------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST- CS RVT_1 38 lsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGs 136 +++ p+ + l++ +++ ++++ lDlk+aF+++pl+ +++l+af+ ++ + ++ ++ ++++lpq + T338694_3 752 IHPTVPNPYTL-------------LSSLPSStTHYSILDLKDAFFTIPLHPSSQPLFAFTWTDP------------------DTHQ-PQQLTWAVLPQAF 819 33333333333.............333444449****************************988..................3344.78899******** PP TTHHHHHHHHHHHHHTT-T......TEEECTTEEEE...EESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 137 vlSPllfnlfmnellrelrkrakgvtllrYaDDili...lsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 SP f+ ++ l ++r +l+ Y D +l+ ++ks +++ + ++l + g++++p K ++ s++++yL + T338694_3 820 RDSPHYFSQALPCDLLSFRPS--ASHLIEYFDNLLL*npSYKSsQQDTLL----LLQHLFSKGYHVSPIKAQIS-----STSITYLSI 896 *******99987666666664..589999999998876533331333333....34444456888888888888.....788888866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 3.8 8.6e-06 0.047 2 16 .. 450 464 .. 449 465 .. 0.90 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 8.6e-06 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +C++C++pGH+a+ C T338694_3 450 PCFRCQKPGHWASGC 464 7***********866 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 5.7 1.9e-05 0.1 2 20 .. 448 466 .. 447 467 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.9e-05 --B-TTT-SSBS-TTT--- CS zf-CCHC_5 2 pglCpRCkkgkHwardChs 20 g C RC k Hwa+ Chs T338694_3 448 RGPCFRCQKPGHWASGCHS 466 688***************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 11040.39 // Query: T229065_1 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 8735.60 // Query: T229065_2 [L=2167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 19.4 0.2 0.016 15.7 0.1 2.8 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.1 9.7e-07 0.016 10 42 .] 1407 1440 .. 1404 1440 .. 0.87 2 ? -0.1 0.0 0.086 1.4e+03 13 22 .. 1537 1546 .. 1533 1557 .. 0.80 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 9.7e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229065_2 1407 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1440 579********8544.6***************766 PP == domain 2 score: -0.1 bits; conditional E-value: 0.086 GPS 13 gsWseeGClt 22 +Ws +GC++ T229065_2 1537 QRWSVRGCRS 1546 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.66 # Mc/sec: 9393.06 // Query: T229065_3 [L=2167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0034 16.7 0.0 0.0052 16.1 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 3.2e-07 0.0052 113 157 .. 1 44 [. 1 98 [. 0.92 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.2e-07 GAIN 113 lsvdvldtenskearlprfpskirgqrpkdledsvklpkkalkes 157 l+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k++ T229065_3 1 LAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPP 44 79*******************.9********************94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 11070.39 // Query: T212053_1 [L=8255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.46u 0.43s 00:00:02.89 Elapsed: 00:00:00.89 # Mc/sec: 26535.00 // Query: T212053_2 [L=8255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.65u 0.50s 00:00:03.15 Elapsed: 00:00:00.96 # Mc/sec: 24600.16 // Query: T212053_3 [L=8254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.39s 00:00:02.68 Elapsed: 00:00:00.73 # Mc/sec: 32346.97 // Query: T032157_1 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 6266.84 // Query: T032157_2 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 6266.84 // Query: T032157_3 [L=1160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 4953.08 // Query: T099917_1 [L=4275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.37s 00:00:01.88 Elapsed: 00:00:00.77 # Mc/sec: 15883.18 // Query: T099917_2 [L=4275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.76 # Mc/sec: 16092.17 // Query: T099917_3 [L=4275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.35s 00:00:01.79 Elapsed: 00:00:00.70 # Mc/sec: 17471.50 // Query: T125907_1 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.72 # Mc/sec: 8006.35 // Query: T125907_2 [L=2014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 7581.20 // Query: T125907_3 [L=2014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.74 # Mc/sec: 7786.10 // Query: T341101_1 [L=1506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 7062.97 // Query: T341101_2 [L=1506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 6335.90 // Query: T341101_3 [L=1506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 5983.90 // Query: T155885_1 [L=4056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.35s 00:00:01.91 Elapsed: 00:00:00.75 # Mc/sec: 15471.37 // Query: T155885_2 [L=4056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:00.71 # Mc/sec: 16343.00 // Query: T155885_3 [L=4055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 16338.97 // Query: T022839_1 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 951 (0.0583221); expected 326.1 (0.02) Passed bias filter: 544 (0.033362); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.70 # Mc/sec: 4679.50 // Query: T022839_2 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 775 (0.0475285); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.63 # Mc/sec: 5199.44 // Query: T022839_3 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 5459.42 // Query: T188375_1 [L=2904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.69 # Mc/sec: 12040.36 // Query: T188375_2 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 11864.27 // Query: T188375_3 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.62 # Mc/sec: 13395.14 // Query: T168001_1 [L=7329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-25 89.5 1.0 3.3e-25 88.7 1.0 1.3 1 TLV_coat ENV polyprotein (coat polyprotein) 6.4e-10 39.1 0.0 1.1e-09 38.3 0.0 1.3 1 rve Integrase core domain 0.0014 18.5 0.2 0.0039 17.1 0.2 1.9 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.013 15.0 0.0 0.013 15.0 0.0 2.0 2 Gag_MA Matrix protein (MA), p15 0.57 9.7 5.5 1.4 8.5 5.5 1.7 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.7 1.0 1e-28 3.3e-25 423 544 .. 6890 7010 .. 6885 7013 .. 0.86 Alignments for each domain: == domain 1 score: 88.7 bits; conditional E-value: 1e-28 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XX CS TLV_coat 423 tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfeg 520 +++ +L l + + +++s+s l+ +++ la vvlQN GLDlL++e+GGlC L+EeC F ++sg+v d ++kL++r ++ + ++ ++ T168001_1 6890 HHSAASLMTSLFS-ITDISQSLSVLQAQVDTLAAVVLQNCQGLDLLTAEKGGLCIFLNEECLFNFNQSGLVYDDVKKLKNRAQNLASQATNYAGPTWP 6986 5566666666654.7889***************************************************************98766666665555226 PP XXXXXXXXXXXX....XXXXXXXX CS TLV_coat 521 llglspwlttllstilgpLlllLL 544 l + wl++++s+++ ++lllLL T168001_1 6987 LSNWVSWLLPIVSSLIPVFLLLLL 7010 99**********999988888776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.0 3.5e-13 1.1e-09 4 99 .. 5620 5711 .. 5619 5713 .. 0.87 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 3.5e-13 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrp 99 p + +q+D+t+ + + ++ yllv++d+f+++i a+++++e+++ ++ ll ++ +fg + s ng++++s+ ++++ + lgi++++++p T168001_1 5620 PTQDYQIDFTHRP--QVKKLRYLLVWVDTFTGWIEAFPTRSEKATTVISSLLSDIIPWFGL--ATSIQSNNGPAFVSQITQAVSQALGIQWKLHAP 5711 56779*****999..555579*********************7777777777777777777..79****************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.2 1.2e-06 0.0039 2 15 .. 4668 4681 .. 4667 4681 .. 0.92 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.2e-06 CTSSSSSSSSTTTT CS zf-CCHC 2 kCynCGepGHiard 15 +C++C++pGH+a++ T168001_1 4668 PCFKCQKPGHWASE 4681 7***********97 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.6 2.8 9.1e+03 38 51 .. 3710 3723 .. 3709 3727 .. 0.90 2 ? 15.0 0.0 4e-06 0.013 28 63 .. 4237 4276 .. 4234 4285 .. 0.82 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 2.8 HHTTGGGGSSS--T CS Gag_MA 38 CsseWptlnvgWPr 51 C+ +W+ ++ WP+ T168001_1 3710 CCKQWTPFGSLWPH 3723 999**********7 PP == domain 2 score: 15.0 bits; conditional E-value: 4e-06 ---HHHHHHHHHTTGGGGSS....S--TT----HHHHHHH CS Gag_MA 28 evrkkklitlCsseWptlnv....gWPreGtfdltviakv 63 +++ k li +C+ Wp ++ +WP++Gtf+l++++ + T168001_1 4237 DIKAKCLIFFCNIAWPQYKLdnssKWPENGTFNLSILQDL 4276 799999**********997533337**********99876 PP >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.5 0.00044 1.4 7 20 .. 5898 5911 .. 5898 5917 .. 0.88 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00044 DUF3704 7 SFGYMPksgIAGSS 20 SFGYMP +g AGS T168001_1 5898 SFGYMPSNGMAGSN 5911 9***********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.17u 0.35s 00:00:02.52 Elapsed: 00:00:00.94 # Mc/sec: 22305.34 // Query: T168001_2 [L=7329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-14 52.9 0.0 4.9e-14 52.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 1.6e-13 51.0 0.0 2.5e-13 50.3 0.0 1.2 1 RNase_H RNase H ------ inclusion threshold ------ 0.017 15.3 0.0 0.033 14.3 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 0.0 9e-18 4.9e-14 32 185 .. 4442 4595 .. 4414 4600 .. 0.85 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 9e-18 Gag_p30 32 esillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeafpltrpdwdyeta.egreslklyrqlllaglrgaarrptnlak 128 + + +++ tw d + +l + ++++rv + a+ + + l++ a + p+w+y+t +g + l+ gl+ aa + n + T168001_2 4442 QYLTQSYNLTWSDLNVILTFTPSPDKQERVYFLAQSYTDTHWLHEPGLQEG-TRAVAREYPHWQYQTDsPGIARRDYMVSCLVEGLKKAAYSAVNYDN 4538 555667778888888888888888888888888888777776666666654.57888999******962576666667789***************** PP Gag_p30 129 vkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklq 185 +k +qgk e+pa f+ rl + r++t d e pe + + + fi+q a+dirk lq T168001_2 4539 LKVTTQGKVENPAQFIARLAATLRHFTALDQEGPEGHLILNMHFITQPAPDIRKNLQ 4595 *******************************************************98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.3 0.0 4.7e-17 2.5e-13 3 109 .. 5355 5461 .. 5353 5470 .. 0.81 Alignments for each domain: == domain 1 score: 50.3 bits; conditional E-value: 4.7e-17 SEEEEEEEEEECT..TTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSB CS RNase_H 3 avvvYtDGsclgn..sgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkp 97 +++++ DGs+++ +++++ag+v+ + ++ + +++l++ t ++aEL+A+++ L ++ +vniytDSkY+++ ++ w +++ tt+ + T168001_2 5355 DHTWFIDGSSSRPnrQSPARAGYVVVSSTSVTEATALHPSITSQQAELIALTQDLTlV--KGLCVNIYTDSKYAFHIVHYHAVIWAERGFLTTQGS-S 5449 679******9976346666****87666567888888899***************944..99**************77877777888888556555.7 PP HTTHHHHHHHHH CS RNase_H 98 vknkelaellke 109 ++n++l+++l + T168001_2 5450 IINASLIKILLK 5461 ***999999854 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 6e-06 0.033 19 89 .. 4768 4833 .. 4763 4833 .. 0.88 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 6e-06 EE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 19 llDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllG 89 l+D GA++t + + P + a +++ i g+ + + + + +l+++ f + s+l++p++pv+llG T168001_2 4768 LIDMGATHTTLLSFQGPVS----LAPVTVVVIDGQAsRPLKTPQLLCQLGQHSFMH--SFLVIPTCPVPLLG 4833 99*****************....9********999945555566677888999999..************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.28u 0.48s 00:00:02.76 Elapsed: 00:00:00.89 # Mc/sec: 23558.45 // Query: T168001_3 [L=7329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.45s 00:00:02.75 Elapsed: 00:00:00.84 # Mc/sec: 24960.74 // Query: T381590_1 [L=4203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.41s 00:00:02.00 Elapsed: 00:00:00.89 # Mc/sec: 13510.19 // Query: T381590_2 [L=4203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.71 # Mc/sec: 16935.31 // Query: T381590_3 [L=4202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.68 # Mc/sec: 17678.25 // Query: T366203_1 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 795 (0.0487551); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 3758.09 // Query: T366203_2 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 997 (0.0611431); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.79 # Mc/sec: 3139.67 // Query: T366203_3 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 845 (0.0518214); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 4593.22 // Query: T268420_1 [L=4750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-17 64.2 0.0 2e-17 63.4 0.0 1.4 1 rve Integrase core domain 1.8e-10 40.7 0.1 3.1e-10 39.9 0.1 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 5.1e-10 39.0 0.6 1.3e-09 37.7 0.6 1.7 1 Integrase_Zn Integrase Zinc binding domain 4.5e-05 22.5 0.5 0.00011 21.3 0.5 1.7 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.4 0.0 4.9e-21 2e-17 3 118 .. 3659 3769 .. 3658 3770 .. 0.94 Alignments for each domain: == domain 1 score: 63.4 bits; conditional E-value: 4.9e-21 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p +lwq+Dvt+++ + g+ ay++v + fs++++ + s e ++ v + l + +a g p ++ Dn++ yts+a+++f + +++++ + p+ T268420_1 3659 EPKSLWQMDVTHVP--SFGRLAYVHVCVGPFSHFVWYTCQSGE-SSACVKHHLLQCFAMMGI--PAYIKKDNAPGYTSQALATFFSVWDTKHIISIPY 3751 699***********..56777**********************.888888888889****99..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 ++q +++vEr+n l+++ T268420_1 3752 NSQGQAIVERMNLSLEQQ 3769 ************999886 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.9 0.1 7.6e-14 3.1e-10 117 165 .. 4018 4066 .. 4011 4069 .. 0.91 Alignments for each domain: == domain 1 score: 39.9 bits; conditional E-value: 7.6e-14 HERV-K_env_2 117 ipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 i k+ +vlvwe+c+a+ a +l+n+ +g iidw+p+g f nc+ q+ T268420_1 4018 IEPGQKKMNVLVWEDCIAEQAEMLHNDSYGIIIDWSPKGMFSLNCASQS 4066 55567999**************************************996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.6 3.1e-13 1.3e-09 1 37 [. 3606 3642 .. 3606 3643 .. 0.94 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 3.1e-13 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqs.CptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+ + CptCq T268420_1 3606 ARHFHNLTHVNASGLKRRYSITWKEAKAII-Q*CPTCQ 3642 899***************************.8888887 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.5 2.7e-08 0.00011 4 49 .. 3824 3868 .. 3821 3869 .. 0.91 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 2.7e-08 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+dl ++ W +++++grG++c P +++++w+P R +++ T268420_1 3824 LVCWRDLITKIWEI-GNIITWGRGYACGSPGLNQQPIWIPSRHLKP 3868 689*********84.69*************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.75 # Mc/sec: 18118.59 // Query: T268420_2 [L=4750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-30 102.4 0.1 1.6e-29 101.3 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 1.7e-11 44.4 0.0 3.3e-11 43.4 0.0 1.4 1 RNase_H RNase H 0.00023 21.0 1.0 0.00041 20.2 1.0 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.3 0.1 2.9e-33 1.6e-29 2 66 .] 3267 3331 .. 3266 3331 .. 0.98 Alignments for each domain: == domain 1 score: 101.3 bits; conditional E-value: 2.9e-33 S-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 2 qklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 k++++rd+lktLNDfQkLlgdINWi+p lgi+t+ L++LF+iLrGd++lt prqLT+eAe++L+ T268420_2 3267 RKVTIHRDQLKTLNDFQKLLGDINWIQPALGIPTYALSNLFSILRGDPSLTGPRQLTKEAEAELQ 3331 689************************************************************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.4 0.0 6.1e-15 3.3e-11 36 141 .. 3501 3602 .. 3481 3603 .. 0.79 Alignments for each domain: == domain 1 score: 43.4 bits; conditional E-value: 6.1e-15 EECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHH...HHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS... CS RNase_H 36 pleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrw...kknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd... 127 +++ ++++++aEL Avie+L a d +n+++DS+Yvv+ tq ++++ + +++ + + ++ + ++ + + ++++h+++H+ T268420_2 3501 QTP-CTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIENAql*FHTDEQLMTLF-----TQFQTAV--RSRMHPFYITHIRAHTPFpgp 3587 455.99****************..8999************.8888998755523333333223.....2344444..456899*********999888 PP .CHHHHHHHHHHHHH CS RNase_H 128 .pkgNemaDrlAkea 141 +++N+maD+l+ +a T268420_2 3588 lTEENQMADHLVANA 3602 889********9875 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.2 1.0 7.5e-08 0.00041 28 87 .] 3909 3968 .. 3908 3968 .. 0.90 Alignments for each domain: == domain 1 score: 20.2 bits; conditional E-value: 7.5e-08 HERV-K_REC 28 epptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 +pptw q+kkl+q++ l + t +++a + ++++ + + ++ +++y+a T268420_2 3909 QPPTWGQIKKLSQMSEENLRKAGQPVTMSNLMVAMIAVITIAMSIPSTRADTENNYTYWA 3968 7***************99999998889888899988999999999999999999*****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.70u 0.38s 00:00:02.08 Elapsed: 00:00:00.78 # Mc/sec: 17421.72 // Query: T268420_3 [L=4749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-21 76.4 0.1 3e-21 75.4 0.1 1.5 1 RVP Retroviral aspartyl protease 7.8e-16 57.8 0.0 1.3e-15 57.1 0.0 1.2 1 dUTPase dUTPase 9.9e-09 34.9 0.4 1.7e-08 34.1 0.4 1.4 1 G-patch G-patch domain ------ inclusion threshold ------ 0.039 14.4 0.0 0.066 13.6 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.4 0.1 7.5e-25 3e-21 2 100 .. 3019 3116 .. 3018 3117 .. 0.97 Alignments for each domain: == domain 1 score: 75.4 bits; conditional E-value: 7.5e-25 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +++P +++ i+gk++++l+DtGAd+++is +++P +w ++ a+ ++ G+g+ e++qs++i+++ + + g+++p+i++ +p+nl+ rdlLq++g++ T268420_3 3019 DKHPTCEITIQGKKFKGLVDTGADISIISLQHWPSTWSIHPAQFNIVGVGKPPEVYQSSYILHCEGPGGQPGTIQPIITS-VPINLWRRDLLQQWGAQ 3115 578*****************************************************************************.***************98 PP E CS RVP 100 L 100 + T268420_3 3116 V 3116 5 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.1 0.0 3.3e-19 1.3e-15 7 106 .. 2891 2989 .. 2886 3007 .. 0.87 Alignments for each domain: == domain 1 score: 57.1 bits; conditional E-value: 3.3e-19 BESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 +++sA Dl+ +k + + p + + +pt+++ ++p+g l+l+RS+l++k + v +gvids y+Ge+++v+ +t+ + k + g+RiAqL++++ T268420_3 2891 SATTAGSAAVDLCCTKAVSLLPgEPPQKIPTGVCGPMPAGRIRLLLGRSSLNMKDVQVQTGVIDSYYNGEIQIVI--STSVPWKAEPGERIAQLLIVP 2986 567899****************7789*******************************************888887..68899**************99 PP BEC CS dUTPase 104 ilt 106 +++ T268420_3 2987 YVE 2989 988 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.4 4.1e-12 1.7e-08 4 44 .. 3126 3166 .. 3123 3167 .. 0.94 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 4.1e-12 G-patch 4 iGvkmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 + m+ mG+ +G+GLGk+ q +eP++ +++ r GlG+ T268420_3 3126 RSQHMMHEMGYVPGMGLGKHLQVLKEPLQLERQSSRQGLGY 3166 5678************************************8 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 1.6e-05 0.066 2 25 .. 3025 3048 .. 3024 3054 .. 0.92 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1.6e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +iis T268420_3 3025 EITIQGKKFKGLVDTGADISIISL 3048 689*******************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.65u 0.37s 00:00:02.02 Elapsed: 00:00:00.67 # Mc/sec: 20277.73 // Query: T210107_1 [L=573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (573 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 704 (0.0431743); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 2687.30 // Query: T210107_2 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 776 (0.0475898); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 2922.13 // Query: T210107_3 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 2773.55 // Query: T316399_1 [L=1855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 7920.66 // Query: T316399_2 [L=1855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 7920.66 // Query: T316399_3 [L=1854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 7799.97 // Query: T090081_1 [L=2803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 11621.60 // Query: T090081_2 [L=2803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.67 # Mc/sec: 11968.52 // Query: T090081_3 [L=2802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 760 (0.0466086); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 13586.52 // Query: T168798_1 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-18 67.3 0.0 1.8e-18 66.7 0.0 1.3 1 rve Integrase core domain 2.4e-09 37.2 1.3 5.4e-09 36.0 1.3 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.7 0.0 2.2e-22 1.8e-18 3 117 .. 704 814 .. 702 816 .. 0.96 Alignments for each domain: == domain 1 score: 66.7 bits; conditional E-value: 2.2e-22 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 +p e +qvD+t+++ + ++++yllv + ++s+++ a+++++e +a +v+++l + + +++ p+r+ sDn +++++ +++ ++ lgi++ ++++++p T168798_1 704 APFEDLQVDFTEMP--KCEDNKYLLVLVCTYSGWVEAYPTRTE-KAGEVTRVLLQDLIPRFEL-PLRIGSDNRPAFVADLVQKTAKVLGITWILHAAYQP 799 689999********..88889**********************.9999999999999999999.************************************ PP rve 103 qdnGkvErfnrtlkd 117 q+ GkvE +n t+k+ T168798_1 800 QSSGKVEWMNWTIKN 814 ************997 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 1.3 6.6e-13 5.4e-09 1 39 [] 646 684 .. 646 684 .. 0.99 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 6.6e-13 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 Hk+tHlG++ l +ll+r++++ ++++++++V+++C +Cq T168798_1 646 HKTTHLGQESLQKLLSRYFYISHLSALAETVAQRCITCQ 684 **************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.73 # Mc/sec: 7481.27 // Query: T168798_2 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-13 50.6 0.0 2.7e-13 49.6 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 1.5e-10 41.1 0.0 3e-10 40.1 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.049 14.2 0.0 0.088 13.4 0.0 1.3 1 Asp_protease_2 Aspartyl protease 0.069 13.6 0.1 0.13 12.7 0.1 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.6 0.0 6.6e-17 2.7e-13 25 106 .. 36 115 .. 24 136 .. 0.83 Alignments for each domain: == domain 1 score: 49.6 bits; conditional E-value: 6.6e-17 TT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHH.HHHHHHS--TTT-XXXXXXXXX CS Gag_MA 25 lsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivt.WrsLvedPPpwvkpflpskplp 106 +v + +kl+tlC+++Wp+l+vgWP eG+ d ++i+kv +k+ ++ G+pD+ Y t +Lv dPP+w++ ++ ++ T168798_2 36 YGVTITPGKLRTLCETDWPALEVGWPSEGSLDRSLISKVWHKITCK--PGYPDKFLYTDT*L-QLVLDPPQWLRGQAAAVLVA 115 6899999************************************977..9*****99976666.59********9776665554 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.0 7.4e-14 3e-10 3 100 .. 252 344 .. 250 345 .. 0.89 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 7.4e-14 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++P++++ + k ie+l+DtGA+ +v++ P + kk+ ++ ++++ + ++ +++ + ++l +p+ ++llGrdlL+kl +++ T168798_2 252 NEPMVRMTVRDKDIEFLVDTGAEYSVVTTPVTPLS---KKTIDIIEATRVSAKQAFCLPCTCTIGVHEVIH--QFLYMPDFSLPLLGRDLLSKLRATI 344 68*********************************...5555555555555599999999999*******9..*********************9987 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 2.2e-05 0.088 1 26 [. 256 281 .. 256 292 .. 0.91 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.2e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispe 26 v+ t+ +k+++fl+DTGa ++++++ T168798_2 256 VRMTVRDKDIEFLVDTGAEYSVVTTP 281 67899*****************9975 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 3.1e-05 0.13 2 26 .. 257 281 .. 256 303 .. 0.90 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.1e-05 EEEETTEEEEEEEETT-SS-EEEHH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiisee 26 +t+ +k+++flvDTGA+ +++++ T168798_2 257 RMTVRDKDIEFLVDTGAEYSVVTTP 281 68999****************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.76 # Mc/sec: 7185.95 // Query: T168798_3 [L=1908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 9924.48 // Query: T238546_1 [L=2691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 13048.29 // Query: T238546_2 [L=2691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.76 # Mc/sec: 10129.60 // Query: T238546_3 [L=2691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.67 # Mc/sec: 11490.29 // Query: T002387_1 [L=1022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.72 # Mc/sec: 4060.79 // Query: T002387_2 [L=1022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 4299.66 // Query: T002387_3 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5124.40 // Query: T156472_1 [L=735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 694 (0.042561); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.41s 00:00:01.76 Elapsed: 00:00:00.79 # Mc/sec: 2661.66 // Query: T156472_2 [L=735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 643 (0.0394333); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.46s 00:00:02.05 Elapsed: 00:00:00.87 # Mc/sec: 2416.91 // Query: T156472_3 [L=734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 792 (0.0485711); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.50s 00:00:02.17 Elapsed: 00:00:00.84 # Mc/sec: 2499.82 // Query: T172640_1 [L=1399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 6352.86 // Query: T172640_2 [L=1399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 12.1 0.7 0.43 10.8 0.7 1.6 1 Phage_ASH Ash protein family Domain annotation for each model (and alignments): >> Phage_ASH Ash protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.7 2.6e-05 0.43 27 68 .. 1329 1360 .. 1323 1363 .. 0.84 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 2.6e-05 Phage_ASH 27 prvfsyfvavarnpafvspkalsssssimVAiaGqpsiwpvS 68 ++ +++++a+ ++ +++ mVA+aG+ps + S T172640_2 1329 ANLRVFVCRNALGCP------CLC----MVARAGHPSQTCWS 1360 455667999999999......888....***********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.62 # Mc/sec: 6455.32 // Query: T172640_3 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 5713.49 // Query: T156241_1 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.60 # Mc/sec: 5583.39 // Query: T156241_2 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 5153.90 // Query: T156241_3 [L=1170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46 # Mc/sec: 7276.46 // Query: T375477_1 [L=4951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-23 83.3 0.4 2.7e-23 82.5 0.4 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0022 17.5 0.4 0.24 10.8 0.0 2.3 2 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.5 0.4 3.3e-27 2.7e-23 60 222 .] 4323 4511 .. 4308 4511 .. 0.90 Alignments for each domain: == domain 1 score: 82.5 bits; conditional E-value: 3.3e-27 ..HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.. CS RVT_1 60 kalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkr 157 ++ ++++++++++++D +kaF +++ + l++l++++++ + +++++++ + ++++ +ng++ e ++ k+g +q ++lSP+lfn++++ l r +r++ T375477_1 4323 ACKQNQRQKHMIISIDAEKAFGKIQQCFMLKTLNKLGIDGMYLKIMRAIDDKHTANIILNGQNLEAFPLKTGRRQRCPLSPFLFNIVLEVLARAIRQE 4420 455678888*****************************************************99*********************************9 PP .............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++v+l+++aDD++++ +++ +q+ll+ ++++ k sg+ki+ + ++ +l+ + s++++y G++l T375477_1 4421 KeikgiqlgkEEVKLSLFADDMIVYLENPIIsAQNLLNLISNFSKFSGYKISVQTSQTFLYtnnrqtesqimsELpftsASKRIQYIGIQL 4511 9***************************5555***************************99998888777665115567999999999975 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.8 0.0 3e-05 0.24 66 111 .. 2857 2902 .. 2846 2911 .. 0.90 2 ! 4.3 0.1 0.0029 24 61 111 .. 4599 4649 .. 4572 4651 .. 0.81 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 3e-05 DUF4417 66 qlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 + +++ Pdf ly+ a + +w +y++r + ++ ++ ++iP++ T375477_1 2857 KAGGITLPDFKLYYKATVTKTAWYLYQNRDMDQWKRTEPSEIIPHI 2902 4589*****************************************8 PP == domain 2 score: 4.3 bits; conditional E-value: 0.0029 DUF4417 61 laaLkqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 l + ++ ++++ Pdf ly a + + y++r i ++ ++ +++P++ T375477_1 4599 LSQKNKARGITLPDFKLYCKATVTKTARYWYQNRDIDQWNRTEPSEIMPHI 4649 33334459**********************************999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.61u 0.31s 00:00:01.92 Elapsed: 00:00:00.72 # Mc/sec: 19672.18 // Query: T375477_2 [L=4950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-90 303.1 13.6 8.4e-81 271.5 9.0 4.4 5 Transposase_22 L1 transposable element 1.1e-39 136.1 11.4 1.2e-29 103.3 5.5 2.9 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 4.4e-07 30.0 0.0 5.5e-06 26.5 0.0 2.2 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.44 10.7 5.6 9.5 6.4 0.4 2.7 2 DUF1882 Domain of unknown function (DUF1882) 2.9 8.4 6.8 8.5 6.9 0.6 2.7 2 NAD_binding_1 Oxidoreductase NAD-binding domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.4 1.8 0.00024 0.78 139 172 .. 1688 1721 .. 1684 1728 .. 0.90 2 ! 45.4 0.1 1.4e-15 4.5e-12 262 297 .. 1816 1851 .. 1813 1856 .. 0.94 3 ? -8.1 5.1 5 1.6e+04 85 121 .. 2313 2328 .. 2267 2378 .. 0.41 4 ! 271.5 9.0 2.6e-84 8.4e-81 171 368 .] 3520 3714 .. 3518 3714 .. 0.93 5 ? -7.0 7.1 5 1.6e+04 72 121 .. 4041 4092 .. 3999 4169 .. 0.53 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00024 .XXHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH CS Transposase_22 139 aslssrideleerv.saaedeieeidrevkerekr 172 +s+ssr d++eerv +ed+++e+++e k+rek+ T375477_2 1688 TSFSSRFDQVEERV*V-IEDQMNEMKQEEKFREKK 1721 699**********776.7***************96 PP == domain 2 score: 45.4 bits; conditional E-value: 1.4e-15 HHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH CS Transposase_22 262 dkilkavrekGrvtlkGkPirltadlsaetlkarre 297 +k+l+a+rekG vt kGkPirltad+s etl+arr T375477_2 1816 KKMLRAAREKGWVTHKGKPIRLTADISLETLQARRV 1851 69********************************95 PP == domain 3 score: -8.1 bits; conditional E-value: 5 XX..................XXXXXXXXXXXXXXXXX CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqs 121 lk ekqe+t l k + T375477_2 2313 LK-ELEKQEQT--------------------LSKGSR 2328 11.11222222....................111111 PP == domain 4 score: 271.5 bits; conditional E-value: 2.6e-84 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS.-TSSSS--EEEEEESSHHHHH CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrq.dskrassrhiivrttkvlnkd 262 k kk++++ +++ + nl liG++es+ e+++klen+l++ii+enfPnl+++an++iqe +r P+ + + +ra++r+ii+r+tkv++k+ T375477_2 3520 KIKKRQTKPPRNM-GLCEKTNLCLIGIPESDGENGTKLENTLKDIIQENFPNLARQANIQIQETQRMPQ-K*SLRRATPRYIILRFTKVEMKE 3610 5555555555555.456789************************************************8.45579****************** PP HHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT.. CS Transposase_22 263 kilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke.. 353 k+l+a+re Grvt kGkPirlt aetl+arrew +++++lkek+fq r++yPakls+i++Geik+f dk++lrd+++trPalk+llke T375477_2 3611 KLLRAAREEGRVTHKGKPIRLT----AETLQARREWEPIFNMLKEKNFQTRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEal 3699 ********************99....59***************************************************************** PP T-SSXSSXXXXXXXX CS Transposase_22 354 knerkdryqaleqar 368 ++er++ryq+l++++ T375477_2 3700 NMERNNRYQPLQKHA 3714 ************996 PP == domain 5 score: -7.0 bits; conditional E-value: 5 XXXXXXXX.....XXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 72 ealkekee.....ntekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 +a k k+e qlk + ekqe+t + +e+ ++++++e k++q+ T375477_2 4041 NAHKRKQErskidTLTSQLK-VLEKQEQTHSKAG-RRQEIAKIRAEMKE-KETQK 4092 45555555554432334555.4445554433321.22333333333332.22222 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.3 5.5 3.6e-33 1.2e-29 1 222 [] 2508 2764 .. 2508 2764 .. 0.86 2 ! 35.2 0.3 2.4e-12 7.8e-09 1 65 [. 4255 4327 .. 4255 4332 .. 0.82 Alignments for each domain: == domain 1 score: 103.3 bits; conditional E-value: 3.6e-33 EE-TT......S-EEE......-THHHHCTB--.............-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliak....rLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpl 85 ipK+ ++++R+i l+++d k+lnk++a+ ++ +kl++++q+gf +g + + + ++++++++ k k+++++++D +k F++ + T375477_2 2508 IPKPRrnttkKDNFRLIYLMNIDAKILNKILAN*iqqQI----KKLIHHDQVGFISGMQGWFIIcksiNVIHHTNRTKEKKHMIISIDAEKVFNKNST 2601 667777777778******************864421144....666***********988887799999999999999999*************9777 PP -GGGGGGG......-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTT CS RVT_1 86 eellrklt......afkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaD 168 + + ++ +++ + k+++ + ++++ +ng++ e +++k+g++qG++lSPllfn++++ l r +r++ k+ +l+++aD T375477_2 2602 ALHAENFQ*tky*wDISQN------SKTYYDKCTANIILNGHKLEAFPVKTGTRQGCPLSPLLFNIVLEALARAIRQEKeikgiqlgkKEAKLSLFAD 2693 7666666333223265555......6699999999*******99*********************************99******************* PP EEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 169 Dililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 D++++ ++ ++q+ll+ ++++ k s++kin +K +++l+ s+ s+++kyLG++l T375477_2 2694 DMVVYLENpIVSAQNLLKLMSNFSKISRYKINVQKLQAFLYtndrqiesqimSElpftiASKRIKYLGIQL 2764 ********6677***************************99999998877761156678*********986 PP == domain 2 score: 35.2 bits; conditional E-value: 2.4e-12 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkk 65 ipK+ ++++Rpisl+++ k lnk++a+r++++++kl++++q+gf pg + + ++ + + ++++++ T375477_2 4255 IPKPVrdttkKENFRPISLMNIHAKFLNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNI*ksiTII-QHVNRT 4327 5666666777789****************************************99999999774333.333443 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.0 0.15 5e+02 50 87 .. 2060 2191 .. 2007 2378 .. 0.61 2 ! 26.5 0.0 1.7e-09 5.5e-06 1 113 [] 3749 3968 .. 3749 3968 .. 0.84 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.15 H.............EEEEEEESSSTTSSEEEEEECSEEEEE................................EEEEEE-SS............ CS x.............xxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxx............ RF Exo_endo_phos 50 a.............dadaskfgtgkgqggvavlsrfpltsl................................vivlGDfNa............ 86 + ++d++ ++ +++++g +++++ +t+ i++ DfN T375477_2 2060 KkkkkaevaflvsdKTDFKPTKFKRDKEGHSIMVKGAITQEeltivnidasntgaprfikqvlrdiqrdleshTIIMADFNNplstlaq*drnl 2153 033333333444443344444445555555555555554448888888888888888888888888888888899******8666666666655 PP .....................................- CS .....................................x RF Exo_endo_phos 87 .....................................r 87 + T375477_2 2154 trisrn*tqlctkqt**tstelftpnqqniyssqhhiT 2191 55555555555444444444444444444444444440 PP == domain 2 score: 26.5 bits; conditional E-value: 1.7e-09 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ ++++++k++d+ v +qE++ +++ +l+ + ++ + ++++ gva+l++ + + + T375477_2 3749 LTVNVNG----LNAPIKRHRFTNWIKSQDPSVCYIQETNLTSRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghsimv 3838 699****....7778899*******************998887777666688556677788888899999999999666677899999999999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++ DfN+ T375477_2 3839 kgsiqqeeltilniyvpntgapifimqvlsdlqrdleshTIIMADFNTplstldrstrqkvnkdiqelnsalhqadlidiyrtlqpkptkytff 3932 9999999*****************************************9999999999999999999999999999999999888888888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T375477_2 3933 saphhtysKIDHIVGSKTLLSKCKRTEIITNClSDH 3968 8888888888***99984444443333333337888 PP >> DUF1882 Domain of unknown function (DUF1882) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.6 0.0045 15 21 53 .. 2345 2377 .. 2332 2381 .. 0.84 2 ? 6.4 0.4 0.0029 9.5 22 59 .. 4092 4129 .. 4080 4135 .. 0.86 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0045 SSS-EEEEETTEEEEE-EEEE-S---HHHHHHH CS DUF1882 21 dgivekiefkgRtfydKfervdapLtssvikkH 53 ++ +ki+ + f++K +++d+ Lt+ + kk T375477_2 2345 QKTLQKINESRSWFFEKINKIDRLLTKLIKKKR 2377 6678999999999*************9987765 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0029 SS-EEEEETTEEEEE-EEEE-S---HHHHHHHHTTSS- CS DUF1882 22 givekiefkgRtfydKfervdapLtssvikkHlkkeit 59 + +ki+ + f++K + +d+pL++ + kk k++i T375477_2 4092 KALQKINESRSWFFEKINNIDRPLARLIKKKREKNQID 4129 567899999999****************9999999986 PP >> NAD_binding_1 Oxidoreductase NAD-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.8 0.026 83 19 87 .. 2254 2321 .. 2247 2345 .. 0.83 2 ? 6.9 0.6 0.0026 8.5 23 87 .. 4003 4067 .. 3994 4079 .. 0.88 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.026 HHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH CS NAD_binding_1 19 ledakdetkvvlvyGnrneedllyreeleelakklpgrlkvvavvsreeagweggkgyvqdalleells 87 +++ k + ++ +++ +++++d +y++ ++ +++ ++g++ ++ +r++++++ + + q + le+ ++ T375477_2 2254 VHN-KMKAEIKMFFETNENKDTMYQNFWDIFKAVYRGKFIARNAHKRKQERSKIDTLTSQLKELEKQEQ 2321 454.7899******************************9999999999998877766666666555544 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0026 TTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH CS NAD_binding_1 23 kdetkvvlvyGnrneedllyreeleelakklpgrlkvvavvsreeagweggkgyvqdalleells 87 + + ++ +++ n++++d y++ ++++++ +g++ +++ +r++++++ + + q ++le+ ++ T375477_2 4003 EIKAELKMFFENNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQLKVLEKQEQ 4067 5678999*********************************9*******99999999999998777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1035 (0.0634736); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.95u 0.44s 00:00:02.39 Elapsed: 00:00:00.90 # Mc/sec: 15734.57 // Query: T375477_3 [L=4950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-64 217.9 38.8 3.7e-16 58.8 4.2 5.3 5 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.4 2.4 4.9e-12 8e-08 2 69 .. 1583 1648 .. 1581 1655 .. 0.87 2 ! 43.2 0.5 1.2e-15 2e-11 221 263 .. 1774 1816 .. 1767 1818 .. 0.95 3 ! 47.5 0.1 6.3e-17 1e-12 300 368 .] 1853 1923 .. 1852 1923 .. 0.90 4 ! 55.4 5.9 2.6e-19 4.2e-15 1 87 [. 3383 3471 .. 3382 3479 .. 0.90 5 ! 58.8 4.2 2.3e-20 3.7e-16 139 189 .. 3487 3537 .. 3483 3540 .. 0.97 Alignments for each domain: == domain 1 score: 31.4 bits; conditional E-value: 4.9e-12 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskak 69 G+ + +k nsk +++s+P+k++sssP e+++ ++df+ l + ++++ +++elke++ ++ k T375477_3 1583 GRNQ---SKKAKNSKNQSASSPPKDHSSSPGM--EQSWTENDFNDLTEVGFRRwviTNFSELKEDVSTHHK 1648 5555...78999*******************9..******************966679*******998876 PP == domain 2 score: 43.2 bits; conditional E-value: 1.2e-15 HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 221 PnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 nl++++n++iqei+ P+r++ +ra +r ii+r+tk+++k+k T375477_3 1774 HNLARQVNIQIQEIQIMPQRYSTRRANARPIIIRFTKAEMKEK 1816 69***************************************98 PP == domain 3 score: 47.5 bits; conditional E-value: 6.3e-17 HHHHHHHHTT---EEETTTEEEEESSSS.EEEESS.HHHH.HHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 300 dviqilkekkfqPrllyPaklsiiidGe.ikvfid.ktkl.rdylstrPalkrllke..knerkdryqaleqar 368 +++ilke+++qPr++yPakls+i + ik f d + + rd+++trPal++llke ++r+++y++l++++ T375477_3 1853 TILNILKENNLQPRISYPAKLSFINE-G*IKCFTD*Q--M*RDFVTTRPALQELLKEalTMDRNNQYEPLQKHA 1923 79*********************976.3668998775..6779**************999***********996 PP == domain 4 score: 55.4 bits; conditional E-value: 2.6e-19 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX.XXXXXXX......XXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkeli.eskakele.alkekee......ntekql 85 +G kk rk+ nsk + +s+P+ke+sssPa e++++++df+elr+e+++++++ elke+ + ++ke++ ++k+++e n+ek l T375477_3 3383 MGEKK---SRKTRNSKNQRASPPPKEHSSSPAM--EQSWMENDFDELREEGFRRSNFCELKEEL*N-NGKEVKnFEKKLDEwitritNAEKSL 3469 57777...9************************..***************************8665.69***99*******999998888888 PP X. CS Transposase_22 86 ki 87 + T375477_3 3470 ND 3471 74 PP == domain 5 score: 58.8 bits; conditional E-value: 2.3e-20 .XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS Transposase_22 139 aslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr 189 +sls+++++leervsa+ed+++e++re k+rekr k+ +qslq+i+d+vkr T375477_3 3487 TSLSNQCNQLEERVSAMEDKMNEMKREEKFREKRLKRDKQSLQEIWDYVKR 3537 69************************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 872 (0.0534772); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.90u 0.39s 00:00:02.29 Elapsed: 00:00:00.84 # Mc/sec: 16858.46 // Query: T194248_1 [L=5027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.37s 00:00:02.20 Elapsed: 00:00:00.87 # Mc/sec: 16530.34 // Query: T194248_2 [L=5027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.34s 00:00:01.99 Elapsed: 00:00:00.78 # Mc/sec: 18437.68 // Query: T194248_3 [L=5027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.39s 00:00:01.98 Elapsed: 00:00:00.75 # Mc/sec: 19175.19 // Query: T337774_1 [L=3291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.54 # Mc/sec: 17435.17 // Query: T337774_2 [L=3291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 13644.92 // Query: T337774_3 [L=3291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.72 # Mc/sec: 13076.38 // Query: T353449_1 [L=2193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1419 (0.0870232); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 135 (0.00827916); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.39s 00:00:02.01 Elapsed: 00:00:00.68 # Mc/sec: 9226.18 // Query: T353449_2 [L=2193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1101 (0.0675212); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.32s 00:00:01.70 Elapsed: 00:00:00.67 # Mc/sec: 9363.88 // Query: T353449_3 [L=2193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1170 (0.0717527); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.42s 00:00:01.92 Elapsed: 00:00:00.77 # Mc/sec: 8147.79 // Query: T201251_1 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 7156.76 // Query: T201251_2 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.62 # Mc/sec: 7041.33 // Query: T201251_3 [L=1525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.80 # Mc/sec: 5453.46 // Query: T150331_1 [L=1991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.74 # Mc/sec: 7697.18 // Query: T150331_2 [L=1991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 9186.96 // Query: T150331_3 [L=1991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 8762.94 // Query: T322052_1 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-20 71.9 242.6 1.4e-06 28.3 6.1 21.2 18 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 1.0 0.00018 2.9 4 24 .. 698 718 .. 697 726 .. 0.88 2 ? -0.4 2.7 0.078 1.3e+03 1 25 [. 748 771 .. 748 771 .. 0.75 3 ? -1.1 0.2 0.12 2e+03 41 49 .. 787 795 .. 781 796 .. 0.85 4 ? -1.7 1.1 0.19 3.1e+03 7 15 .. 796 803 .. 790 809 .. 0.76 5 ! 14.7 1.3 1.5e-06 0.024 1 14 [. 811 823 .. 811 830 .. 0.90 6 ! 3.0 18.6 0.0066 1.1e+02 1 50 [] 832 897 .. 832 897 .. 0.88 7 ? -7.6 18.1 1 1.6e+04 3 31 .. 868 943 .. 866 946 .. 0.62 8 ? 2.4 10.0 0.01 1.7e+02 6 49 .. 952 994 .. 949 995 .. 0.91 9 ? -5.2 23.4 1 1.6e+04 13 42 .. 1001 1062 .. 974 1081 .. 0.66 10 ! 28.3 6.1 8.4e-11 1.4e-06 21 50 .] 1097 1126 .. 1084 1126 .. 0.92 11 ! 19.3 16.1 5.6e-08 0.00091 1 40 [. 1131 1169 .. 1131 1174 .. 0.92 12 ! 5.7 7.8 0.00097 16 16 43 .. 1299 1327 .. 1279 1334 .. 0.74 13 ! 17.6 6.0 1.9e-07 0.003 1 26 [. 1350 1374 .. 1350 1376 .. 0.96 14 ! 12.1 0.5 9.6e-06 0.16 2 15 .. 1384 1396 .. 1384 1403 .. 0.82 15 ! 14.8 0.7 1.4e-06 0.023 1 13 [. 1404 1416 .. 1404 1434 .. 0.87 16 ! 6.7 12.2 0.00048 7.9 1 46 [. 1436 1482 .. 1436 1484 .. 0.79 17 ! 2.7 0.7 0.0085 1.4e+02 29 50 .] 1486 1508 .. 1486 1508 .. 0.86 18 ! 16.5 16.9 4e-07 0.0066 2 39 .. 1514 1573 .. 1513 1580 .. 0.90 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322052_1 698 APTSRQPLQAQNFLQSASTDQ 718 9********999999987655 PP == domain 2 score: -0.4 bits; conditional E-value: 0.078 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322052_1 748 TGTAPSLQWPL*tQ---LLPPSLLSRP 771 799*******9744...6776666665 PP == domain 3 score: -1.1 bits; conditional E-value: 0.12 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322052_1 787 GSLSRPSSS 795 689999997 PP == domain 4 score: -1.7 bits; conditional E-value: 0.19 DUF4705 7 srrpLqapa 15 srrpLq ++ T322052_1 796 SRRPLQ-AQ 803 89****.65 PP == domain 5 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322052_1 811 PGPAPASRRPLQ-A 823 9***********.5 PP == domain 6 score: 3.0 bits; conditional E-value: 0.0066 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322052_1 832 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 897 9***********999**********97777666666778889************9999...88899998 PP == domain 7 score: -7.6 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322052_1 868 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 943 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 8 score: 2.4 bits; conditional E-value: 0.01 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322052_1 952 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 994 59*****.************9...679999998899*********97 PP == domain 9 score: -5.2 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322052_1 1001 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1062 36666666666666666666666666666665567779********************5543 PP == domain 10 score: 28.3 bits; conditional E-value: 8.4e-11 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPssCL 50 ++ ++aqLp A++Gp+l+pa+L+ P+sCL T322052_1 1097 FFGLAPAQLPTAFVGPELSPAKLFGPTSCL 1126 599**************************9 PP == domain 11 score: 19.3 bits; conditional E-value: 5.6e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 +gpA a+++pLq +++l+++glsrps+++ +Gp++ p T322052_1 1131 TGPALAGEQPLQ-APLLPPRGLSRPSSRPHSGLPGPSPCP 1169 8***********.***********************9843 PP == domain 12 score: 5.7 bits; conditional E-value: 0.00097 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322052_1 1299 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1327 3356889***************9887776 PP == domain 13 score: 17.6 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322052_1 1350 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1374 9***********.***********96 PP == domain 14 score: 12.1 bits; conditional E-value: 9.6e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322052_1 1384 GPAWASRQPLQA-Q 1396 9**********4.4 PP == domain 15 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322052_1 1404 PGPAPASRRPLQA 1416 9***********7 PP == domain 16 score: 6.7 bits; conditional E-value: 0.00048 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322052_1 1436 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1482 9***********999*****99888765.4566666544777778777 PP == domain 17 score: 2.7 bits; conditional E-value: 0.0085 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322052_1 1486 LLVASSGPELdLQSAFAGPASCL 1508 789*******8677888999998 PP == domain 18 score: 16.5 bits; conditional E-value: 4e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322052_1 1514 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1573 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.74 # Mc/sec: 6595.37 // Query: T322052_2 [L=1705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-27 95.9 256.9 2e-14 53.4 12.6 22.6 20 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.5 0.41 6.8e+03 7 16 .. 97 105 .. 87 123 .. 0.63 2 ? -2.2 0.2 0.29 4.7e+03 16 46 .. 402 432 .. 394 434 .. 0.82 3 ? -1.1 0.2 0.13 2.1e+03 38 47 .. 699 708 .. 698 712 .. 0.76 4 ? 0.5 0.1 0.04 6.5e+02 7 34 .. 711 737 .. 706 739 .. 0.88 5 ! 31.1 5.2 1.1e-11 1.8e-07 3 49 .. 739 784 .. 737 785 .. 0.96 6 ! 7.1 3.1 0.00035 5.7 31 47 .. 787 803 .. 785 807 .. 0.90 7 ? 1.5 1.0 0.02 3.2e+02 34 49 .. 811 826 .. 808 827 .. 0.91 8 ? -13.4 23.0 1 1.6e+04 8 31 .. 849 909 .. 827 930 .. 0.57 9 ? 1.0 7.9 0.028 4.6e+02 6 46 .. 915 947 .. 911 950 .. 0.54 10 ! 33.5 11.7 2e-12 3.3e-08 2 50 .] 936 984 .. 935 984 .. 0.89 11 ! 8.8 4.7 0.0001 1.7 29 50 .] 984 1005 .. 982 1005 .. 0.93 12 ! 18.3 2.4 1.1e-07 0.0018 17 50 .] 1005 1038 .. 1005 1038 .. 0.95 13 ! 53.4 12.6 1.2e-18 2e-14 1 50 [] 1043 1090 .. 1043 1090 .. 0.99 14 ! 15.7 14.9 7.2e-07 0.012 2 44 .. 1121 1162 .. 1120 1174 .. 0.88 15 ? -1.5 0.1 0.17 2.7e+03 32 46 .. 1211 1229 .. 1200 1230 .. 0.80 16 ? 1.5 9.0 0.02 3.3e+02 2 27 .. 1285 1310 .. 1284 1335 .. 0.70 17 ! 6.1 18.1 0.0007 11 13 46 .. 1348 1395 .. 1311 1398 .. 0.67 18 ? -2.0 11.5 0.25 4e+03 9 27 .. 1401 1418 .. 1400 1452 .. 0.68 19 ? -2.2 2.6 0.29 4.7e+03 7 22 .. 1452 1466 .. 1450 1479 .. 0.59 20 ! 17.0 15.8 2.8e-07 0.0046 1 39 [. 1480 1562 .. 1480 1577 .. 0.96 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.41 DUF4705 7 srrpLqapas 16 ++r+L+ p T322052_2 97 GQRRLH-PEN 105 577777.554 PP == domain 2 score: -2.2 bits; conditional E-value: 0.29 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322052_2 402 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 432 5677788888888889999898888999888 PP == domain 3 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322052_2 699 LPPGSLSRPR 708 5788888884 PP == domain 4 score: 0.5 bits; conditional E-value: 0.04 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322052_2 711 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 737 678889.9************99999877 PP == domain 5 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322052_2 739 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 784 689*******.************************************ PP == domain 6 score: 7.1 bits; conditional E-value: 0.00035 DUF4705 31 vAsaGpklppagLsrPs 47 +As+Gp lpp+gL rP+ T322052_2 787 AASPGPALPPGGLCRPR 803 8***************6 PP == domain 7 score: 1.5 bits; conditional E-value: 0.02 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322052_2 811 QGQLLPPGALCRPKSS 826 79999********997 PP == domain 8 score: -13.4 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322052_2 849 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 909 5777766666666666653333333333333333333223222111134555555555555 PP == domain 9 score: 1.0 bits; conditional E-value: 0.028 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+s +L +AsaGp + L+rP T322052_2 915 ASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 947 5555.5555555555.......5555555555554555555 PP == domain 10 score: 33.5 bits; conditional E-value: 2e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322052_2 936 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 984 9******9555.7765499***************************9976 PP == domain 11 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322052_2 984 LRASSPGPALPPGCVSRPDSCL 1005 7799*****************9 PP == domain 12 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322052_2 1005 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1038 68899999************************87 PP == domain 13 score: 53.4 bits; conditional E-value: 1.2e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322052_2 1043 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1090 9*********************************************..97 PP == domain 14 score: 15.7 bits; conditional E-value: 7.2e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLs 44 gp Pasr+p q +++ ++l rp+++Lp As+Gp l p + s T322052_2 1121 GPPPASRWPVQ-AQLWLENSLCRPRSCLPGASPGPALAPTAAS 1162 899********.*************************665544 PP == domain 15 score: -1.5 bits; conditional E-value: 0.17 DUF4705 32 AsaGpkl....ppagLsrP 46 A+aGp p++gL rP T322052_2 1211 ATAGPADallqPELGLYRP 1229 8888887778899999998 PP == domain 16 score: 1.5 bits; conditional E-value: 0.02 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322052_2 1285 GRGWASsSWPLQ-THLQPPGVLSGPSS 1310 78999637****.88888888888876 PP == domain 17 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322052_2 1348 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1395 25578889********************55555555555555555555 PP == domain 18 score: -2.0 bits; conditional E-value: 0.25 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322052_2 1401 RPLQ-AQLQPPGGLCRPKS 1418 9***.99999999888865 PP == domain 19 score: -2.2 bits; conditional E-value: 0.29 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322052_2 1452 SSQPLQ-AQLLLPQWP 1466 679***.666555433 PP == domain 20 score: 17.0 bits; conditional E-value: 2.8e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322052_2 1480 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1562 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 7069.15 // Query: T322052_3 [L=1705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-47 158.3 272.5 2.5e-18 65.9 10.8 22.4 21 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.2 0.83 1.4e+04 23 30 .. 150 157 .. 130 159 .. 0.65 2 ! 21.5 0.9 1.1e-08 0.00019 27 48 .. 698 719 .. 686 719 .. 0.94 3 ! 4.5 3.1 0.0023 37 2 39 .. 727 764 .. 727 768 .. 0.86 4 ! 37.3 19.1 1.3e-13 2.1e-09 1 50 [] 779 837 .. 779 837 .. 0.96 5 ! 16.8 10.2 3.2e-07 0.0052 16 49 .. 824 857 .. 823 859 .. 0.91 6 ! 3.8 5.5 0.0037 60 1 19 [. 876 897 .. 862 900 .. 0.68 7 ! 2.6 11.7 0.0092 1.5e+02 1 38 [. 876 910 .. 876 925 .. 0.73 8 ? -1.2 19.5 0.14 2.2e+03 1 39 [. 901 962 .. 901 963 .. 0.84 9 ! 3.8 12.9 0.0038 63 7 39 .. 963 1005 .. 962 1010 .. 0.87 10 ! 6.2 1.7 0.00065 11 1 18 [. 999 1015 .. 999 1031 .. 0.75 11 ! 16.3 2.3 4.5e-07 0.0074 1 26 [. 1032 1056 .. 1032 1058 .. 0.95 12 ! 14.5 14.4 1.7e-06 0.028 1 36 [. 1065 1143 .. 1065 1145 .. 0.75 13 ! 2.6 11.2 0.0086 1.4e+02 2 34 .. 1142 1173 .. 1141 1184 .. 0.83 14 ! 14.4 10.8 1.9e-06 0.031 18 50 .] 1290 1322 .. 1275 1322 .. 0.87 15 ! 23.1 5.9 3.5e-09 5.7e-05 17 50 .] 1322 1355 .. 1321 1355 .. 0.96 16 ! 65.9 10.8 1.5e-22 2.5e-18 1 50 [] 1360 1409 .. 1360 1409 .. 0.99 17 ! 12.0 1.2 1e-05 0.17 25 44 .. 1405 1424 .. 1405 1425 .. 0.95 18 ! 16.2 7.3 4.9e-07 0.008 20 49 .. 1432 1461 .. 1430 1463 .. 0.90 19 ? 0.2 1.7 0.051 8.3e+02 19 46 .. 1472 1503 .. 1470 1505 .. 0.87 20 ? 0.9 3.3 0.029 4.8e+02 4 29 .. 1524 1548 .. 1522 1548 .. 0.88 21 ! 18.5 6.9 9.7e-08 0.0016 2 35 .. 1547 1579 .. 1546 1586 .. 0.92 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.83 DUF4705 23 srpsaqLp 30 rp++ Lp T322052_3 150 TRPPSLLP 157 46666666 PP == domain 2 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322052_3 698 SYLPAASPGPELSPVGLHRPSS 719 67******************98 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322052_3 727 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 764 67789999888.899********************9854 PP == domain 4 score: 37.3 bits; conditional E-value: 1.3e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322052_3 779 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 837 9*****************99997888999****************************98 PP == domain 5 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps+ L +As+G k p ++LsrPss+ T322052_3 824 SRPQVGLPRPSSSLSAASPGAKVPRVSLSRPSSS 857 56899**************************975 PP == domain 6 score: 3.8 bits; conditional E-value: 0.0037 DUF4705 1 PgpAPasrrpLqa...paslqa 19 PgpA ++rpLqa p +l++ T322052_3 876 PGPAFDFWRPLQAstrPGLLPP 897 6777777777776666555554 PP == domain 7 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322052_3 876 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 910 9***********..666665.88888999999888876 PP == domain 8 score: -1.2 bits; conditional E-value: 0.14 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322052_3 901 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 962 799999999999999999999999999999988877788888887764489********997 PP == domain 9 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 7 srrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322052_3 963 FRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1005 69*************8888776549**************9854 PP == domain 10 score: 6.2 bits; conditional E-value: 0.00065 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322052_3 999 PGPTPASQQPLW-TQCLP 1015 9**********9.77766 PP == domain 11 score: 16.3 bits; conditional E-value: 4.5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322052_3 1032 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1056 9***********.9***********7 PP == domain 12 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqa...........................................paslqasglsrpsaqLpvAsaGp 36 P+pA+asrrpLqa + +l++ gl rps++ AsaGp T322052_3 1065 PRPAWASRRPLQAqvvlksaspgpasqqvsklfwlsscpapnrlcrprtfssqalrAHLLPPGGLYRPSSGWRTASAGP 1143 99*********************77777777777777777777777777777777777777777777777777777776 PP == domain 13 score: 2.6 bits; conditional E-value: 0.0086 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ pLq +++ +++++ + + +p++++ T322052_3 1142 GPALASQGPLQ-AQLSPPQRPPGAKSLPPASTG 1173 9**********.888888888888887777765 PP == domain 14 score: 14.4 bits; conditional E-value: 1.9e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322052_3 1290 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1322 899***************************987 PP == domain 15 score: 23.1 bits; conditional E-value: 3.5e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322052_3 1322 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1355 899*****************************87 PP == domain 16 score: 65.9 bits; conditional E-value: 1.5e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322052_3 1360 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1409 9***********************************************98 PP == domain 17 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322052_3 1405 PSSSLPAASAGLSRPQVGLE 1424 99****************96 PP == domain 18 score: 16.2 bits; conditional E-value: 4.9e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322052_3 1432 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1461 67888**********************975 PP == domain 19 score: 0.2 bits; conditional E-value: 0.051 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322052_3 1472 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1503 67888999999999***99999999******9 PP == domain 20 score: 0.9 bits; conditional E-value: 0.029 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322052_3 1524 RPASSR-LTAPSPVQSSCLSATSAGP 1548 599999.*99999*******999976 PP == domain 21 score: 18.5 bits; conditional E-value: 9.7e-08 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322052_3 1547 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1579 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 7173.11 // Query: T251537_1 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0018 17.6 56.1 0.0018 17.6 56.1 1.7 2 SDA1 SDA1 Domain annotation for each model (and alignments): >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.2 5.8 1 1.6e+04 320 336 .. 226 242 .. 222 250 .. 0.48 2 ! 17.6 56.1 1.1e-07 0.0018 77 177 .. 1006 1096 .. 980 1146 .. 0.46 Alignments for each domain: == domain 1 score: -7.2 bits; conditional E-value: 1 SDA1 320 hkvkskkkrslrekqka 336 +k k+k+kr+ r k+k+ T251537_1 226 KKKKRKRKRRRRRKEKK 242 33444444333333333 PP == domain 2 score: 17.6 bits; conditional E-value: 1.1e-07 SDA1 77 ekwkeeekkkkreeeeedsddeddeedwevesdddseedseggwidvesdeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 174 +k+k+ee+++++eeeee+ ++e++ee++e e+++++ee++eg+ +ee++e+e+eeeeeeeee++ee+eeeeeeeeee+eeeeeeeeeee+ T251537_1 1006 KKKKKEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEGE---------EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEDEEEEEEEEEEEE 1093 333333333333122222.222222222222222222333333.........2222222222222222333333222222222222222222222222 PP SDA1 175 eke 177 e+e T251537_1 1094 EEE 1096 222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1744 (0.106954); expected 326.1 (0.02) Passed bias filter: 721 (0.0442169); expected 326.1 (0.02) Passed Vit filter: 446 (0.0273519); expected 16.3 (0.001) Passed Fwd filter: 187 (0.0114682); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.60u 0.45s 00:00:04.05 Elapsed: 00:00:01.34 # Mc/sec: 2965.44 // Query: T251537_2 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.7 5.4 8.1 13 4.5 8.1 1.4 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 8.1 0.00079 13 280 315 .. 1023 1060 .. 960 1110 .. 0.54 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.00079 DUF913 280 etkeeek................ssededvemedaeaetesesdeeeeseee 315 ++k+++k + + +++++++++++++ T251537_2 1023 KKKKKKKkkrkkkrkkkrkkkkkE----------K----KKKKKKKKKKKKK 1060 111111111111111111111110..........1....1111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2638 (0.161781); expected 326.1 (0.02) Passed bias filter: 789 (0.0483871); expected 326.1 (0.02) Passed Vit filter: 558 (0.0342205); expected 16.3 (0.001) Passed Fwd filter: 110 (0.00674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.88u 0.55s 00:00:03.43 Elapsed: 00:00:00.95 # Mc/sec: 4182.83 // Query: T251537_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 764 (0.0468539); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.81 # Mc/sec: 4905.79 // Query: T314395_1 [L=4634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.41s 00:00:02.00 Elapsed: 00:00:00.80 # Mc/sec: 16571.36 // Query: T314395_2 [L=4633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:00.85 # Mc/sec: 15593.21 // Query: T314395_3 [L=4633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.38s 00:00:02.10 Elapsed: 00:00:00.81 # Mc/sec: 16363.24 // Query: T125932_1 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5920.90 // Query: T125932_2 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 6256.04 // Query: T125932_3 [L=1158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 4732.63 // Query: T233963_1 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 7471.33 // Query: T233963_2 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 7581.20 // Query: T233963_3 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.74 # Mc/sec: 6966.51 // Query: T300172_1 [L=2116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.27s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 8647.88 // Query: T300172_2 [L=2116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 8773.21 // Query: T300172_3 [L=2115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.72 # Mc/sec: 8403.69 // Query: T317743_1 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4876.22 // Query: T317743_2 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5834.05 // Query: T317743_3 [L=1141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 91 (0.00558077); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 5351.16 // Query: T258962_1 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11696.23 // Query: T258962_2 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.4 6.6 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00062 10 6 41 .. 1880 1915 .. 1866 1926 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00062 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258962_2 1880 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1915 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.82 # Mc/sec: 9841.95 // Query: T258962_3 [L=2820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.73 # Mc/sec: 11051.43 // Query: T323213_1 [L=1914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-85 280.8 461.7 3.2e-17 62.3 8.0 42.4 40 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.8 0.068 1.1e+03 7 31 .. 51 74 .. 38 79 .. 0.59 2 ! 34.6 7.0 9.2e-13 1.5e-08 3 49 .. 79 124 .. 77 125 .. 0.96 3 ! 31.1 7.0 1.1e-11 1.8e-07 1 38 [. 130 166 .. 130 176 .. 0.93 4 ! 24.1 4.6 1.7e-09 2.7e-05 5 38 .. 177 209 .. 171 218 .. 0.92 5 ! 23.2 6.1 3.2e-09 5.2e-05 5 38 .. 221 253 .. 220 256 .. 0.95 6 ! 10.9 3.2 2.3e-05 0.37 1 34 [. 249 277 .. 249 288 .. 0.77 7 ! 22.8 16.3 4.5e-09 7.3e-05 1 49 [. 291 338 .. 291 339 .. 0.99 8 ! 9.1 1.8 8.3e-05 1.3 8 40 .. 352 383 .. 350 386 .. 0.84 9 ! 11.2 12.5 1.8e-05 0.29 2 34 .. 377 408 .. 376 436 .. 0.59 10 ! 19.0 0.3 6.7e-08 0.0011 23 48 .. 492 517 .. 461 517 .. 0.80 11 ! 24.2 0.9 1.6e-09 2.7e-05 29 50 .] 519 540 .. 519 540 .. 0.99 12 ! 12.3 0.4 8.6e-06 0.14 31 47 .. 542 558 .. 542 560 .. 0.95 13 ! 4.7 1.5 0.0019 32 14 39 .. 557 582 .. 557 587 .. 0.89 14 ! 8.7 2.1 0.00011 1.8 4 30 .. 592 617 .. 590 620 .. 0.89 15 ! 6.7 0.5 0.00046 7.4 3 18 .. 623 637 .. 622 641 .. 0.87 16 ! 22.9 14.2 4.2e-09 6.9e-05 1 50 [] 642 690 .. 642 690 .. 0.91 17 ! 8.8 2.1 0.00011 1.7 21 38 .. 682 699 .. 674 707 .. 0.82 18 ! 25.1 7.7 8.4e-10 1.4e-05 2 50 .] 696 753 .. 696 753 .. 0.81 19 ! 27.5 7.2 1.5e-10 2.5e-06 20 50 .] 744 774 .. 743 774 .. 0.96 20 ! 16.0 9.4 5.9e-07 0.0097 16 49 .. 761 794 .. 760 796 .. 0.91 21 ! 3.0 12.0 0.0066 1.1e+02 17 50 .] 783 828 .. 781 828 .. 0.81 22 ? -0.4 7.7 0.075 1.2e+03 14 38 .. 813 837 .. 805 851 .. 0.81 23 ? -4.0 32.4 1 1.6e+04 2 38 .. 857 979 .. 856 986 .. 0.94 24 ? 1.9 1.0 0.015 2.5e+02 1 18 [. 975 991 .. 975 1007 .. 0.78 25 ! 16.2 2.3 5.1e-07 0.0084 1 26 [. 1008 1032 .. 1008 1034 .. 0.95 26 ? -6.0 11.9 1 1.6e+04 1 48 [. 1041 1110 .. 1041 1118 .. 0.63 27 ! 4.5 13.9 0.0023 37 2 41 .. 1118 1154 .. 1117 1161 .. 0.72 28 ? -1.5 0.3 0.17 2.7e+03 5 39 .. 1177 1225 .. 1177 1232 .. 0.72 29 ? -2.2 0.1 0.27 4.5e+03 30 44 .. 1243 1257 .. 1241 1263 .. 0.81 30 ? -4.1 1.0 1 1.6e+04 24 36 .. 1330 1342 .. 1308 1350 .. 0.44 31 ? -3.0 0.6 0.51 8.4e+03 6 22 .. 1369 1398 .. 1368 1410 .. 0.68 32 ? -1.6 0.1 0.19 3.1e+03 31 46 .. 1511 1530 .. 1494 1531 .. 0.78 33 ! 13.2 10.0 4.3e-06 0.071 17 50 .] 1555 1588 .. 1533 1588 .. 0.85 34 ! 27.7 3.3 1.3e-10 2.2e-06 17 50 .] 1588 1621 .. 1587 1621 .. 0.96 35 ! 62.3 8.0 2e-21 3.2e-17 1 50 [] 1626 1675 .. 1626 1675 .. 0.99 36 ! 12.3 0.9 8.6e-06 0.14 25 44 .. 1671 1690 .. 1670 1691 .. 0.91 37 ! 10.6 5.2 2.9e-05 0.47 24 49 .. 1702 1726 .. 1696 1727 .. 0.80 38 ! 4.0 2.0 0.0033 53 26 39 .. 1725 1740 .. 1724 1749 .. 0.73 39 ! 2.5 0.7 0.0096 1.6e+02 29 50 .] 1751 1773 .. 1751 1773 .. 0.86 40 ! 20.9 14.1 1.7e-08 0.00028 1 39 [. 1778 1838 .. 1778 1845 .. 0.95 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.068 DUF4705 7 srrpLqapaslqasglsrpsaqLpv 31 s +p q + ++ ++gl rp+ L++ T323213_1 51 SSQPPQ-TKLMTHNGLFRPIPYLTA 74 344555.666666666666666665 PP == domain 2 score: 34.6 bits; conditional E-value: 9.2e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323213_1 79 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 124 689*******.************************************ PP == domain 3 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323213_1 130 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 166 9***********.***********************86 PP == domain 4 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323213_1 177 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 209 899*****.***********************98 PP == domain 5 score: 23.2 bits; conditional E-value: 3.2e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323213_1 221 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 253 9*******.***********************87 PP == domain 6 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323213_1 249 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 277 9***********5444.....4446888888887 PP == domain 7 score: 22.8 bits; conditional E-value: 4.5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323213_1 291 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 338 9***********.************************************ PP == domain 8 score: 9.1 bits; conditional E-value: 8.3e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323213_1 352 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 383 57799..889999****************99544 PP == domain 9 score: 11.2 bits; conditional E-value: 1.8e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323213_1 377 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 408 9**********.666666666666666666553 PP == domain 10 score: 19.0 bits; conditional E-value: 6.7e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323213_1 492 LQTKLSLPVASTGQNCPQVSLSRANS 517 488999*****************976 PP == domain 11 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323213_1 519 LPVASAGQNRPQVSLFTPSSCL 540 8********************9 PP == domain 12 score: 12.3 bits; conditional E-value: 8.6e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323213_1 542 VASAGAKLPQVGLSRPS 558 8***************6 PP == domain 13 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323213_1 557 PSLLLPEGMYRPSLCLTADSPCPALP 582 678999************99999997 PP == domain 14 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323213_1 592 APAFRQLVR-AQLLPHGGLFSPNSCLL 617 9*****555.***************95 PP == domain 15 score: 6.7 bits; conditional E-value: 0.00046 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323213_1 623 SAPASHWPLE-AQLMP 637 6********9.99887 PP == domain 16 score: 22.9 bits; conditional E-value: 4.2e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323213_1 642 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 690 8***********.***************99876666667899*******9 PP == domain 17 score: 8.8 bits; conditional E-value: 0.00011 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323213_1 682 SLCGPSSCLPVASVGQAR 699 5667***********986 PP == domain 18 score: 25.1 bits; conditional E-value: 8.4e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323213_1 696 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 753 678888888888888888852.44311567899*************************9 PP == domain 19 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323213_1 744 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 774 79***************************87 PP == domain 20 score: 16.0 bits; conditional E-value: 5.9e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323213_1 761 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 794 56899**************************975 PP == domain 21 score: 3.0 bits; conditional E-value: 0.0066 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323213_1 783 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 828 57899***9637*********9989888888888888888888765 PP == domain 22 score: -0.4 bits; conditional E-value: 0.075 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323213_1 813 PGLLPPEGLHRPSLSLTADSPRPAS 837 67899**********9998877765 PP == domain 23 score: -4.0 bits; conditional E-value: 1 DUF4705 2 gpAPasrrpLqa......................................................................................pa 15 gpAPa+++pLqa ++ T323213_1 857 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapqAQ 956 9****************************************************************************99999999999999999997777 PP DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 ++ glsr s+++p+As+Gp+ T323213_1 957 VRPHGGLSRISSCPPMASPGPTA 979 77999999999999999999986 PP == domain 24 score: 1.9 bits; conditional E-value: 0.015 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp as++pL +++l+ T323213_1 975 PGPTAASQQPLW-TQRLR 991 9**********9.88886 PP == domain 25 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323213_1 1008 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1032 9***********.9***********7 PP == domain 26 score: -6.0 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslq.......asglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as r pLqa pas+q s++ +++ p ++ + l p +gL rPss T323213_1 1041 PRPAWAS-R*PLQAqvvlksaspgPASQQvsklfwlNSCPAPSRLCRPRTFSSQALrarllPLGGLYRPSS 1110 7788887.666888888888888877777222222223444444555556666666667777777777776 PP == domain 27 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 g+A as+rpLq +++ +++ p+a +As+ p ++p+ T323213_1 1118 GSALASQRPLQ-AQLSPPR--RPPGAKSLPASRQPACSPV 1154 89*********.7777777..4566666667777777665 PP == domain 28 score: -1.5 bits; conditional E-value: 0.17 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323213_1 1177 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 1225 7788866657777787888888999999999843777777777776555 PP == domain 29 score: -2.2 bits; conditional E-value: 0.27 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323213_1 1243 CLAPAPPTLREVGVS 1257 579999999999865 PP == domain 30 score: -4.1 bits; conditional E-value: 1 DUF4705 24 rpsaqLpvAsaGp 36 p + + +++a+p T323213_1 1330 PPTLIPCLTPAPP 1342 3444444444444 PP == domain 31 score: -3.0 bits; conditional E-value: 0.51 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323213_1 1369 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 1398 788888666677776666666666666655 PP == domain 32 score: -1.6 bits; conditional E-value: 0.19 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323213_1 1511 EATVGPADalllPELGLYRP 1530 58888876667799999999 PP == domain 33 score: 13.2 bits; conditional E-value: 4.3e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323213_1 1555 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1588 45568**************************987 PP == domain 34 score: 27.7 bits; conditional E-value: 1.3e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323213_1 1588 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1621 8999****************************87 PP == domain 35 score: 62.3 bits; conditional E-value: 2e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323213_1 1626 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1675 9***********************************************98 PP == domain 36 score: 12.3 bits; conditional E-value: 8.6e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323213_1 1671 SSSSLPAASAGLSCPQVGLE 1690 6899**************96 PP == domain 37 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323213_1 1702 GPSSV-LLASPGAKLPRVSLSRPSSS 1726 45555.579***************97 PP == domain 38 score: 4.0 bits; conditional E-value: 0.0033 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323213_1 1725 SSCLPVASFGPAQlmA 1740 89*********86443 PP == domain 39 score: 2.5 bits; conditional E-value: 0.0096 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323213_1 1751 LLVASSGPELdLQSAFAGPASCL 1773 789*******8677888999998 PP == domain 40 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323213_1 1778 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1838 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 7935.69 // Query: T323213_2 [L=1914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-67 223.0 480.8 3.3e-08 33.5 4.4 41.0 36 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 2.9 1.9e-07 0.003 29 48 .. 40 59 .. 31 59 .. 0.95 2 ! 11.7 3.8 1.3e-05 0.21 2 43 .. 67 108 .. 67 113 .. 0.90 3 ! 25.4 6.7 6.8e-10 1.1e-05 1 36 [. 119 153 .. 119 156 .. 0.94 4 ! 13.1 9.5 4.8e-06 0.079 3 50 .] 153 221 .. 151 221 .. 0.91 5 ! 4.3 7.3 0.0027 44 2 47 .. 195 230 .. 194 237 .. 0.69 6 ! 12.2 2.7 8.9e-06 0.15 3 26 .. 240 262 .. 239 269 .. 0.91 7 ! 14.9 4.9 1.3e-06 0.021 10 39 .. 289 317 .. 289 319 .. 0.96 8 ! 19.7 0.5 4.2e-08 0.00068 22 47 .. 333 358 .. 327 359 .. 0.91 9 ! 15.2 12.5 1e-06 0.017 8 38 .. 372 401 .. 365 417 .. 0.88 10 ! 15.9 5.0 6.2e-07 0.01 9 48 .. 458 496 .. 451 498 .. 0.94 11 ? 1.6 0.9 0.019 3.1e+02 7 27 .. 498 518 .. 497 525 .. 0.65 12 ! 6.4 4.3 0.00056 9.2 3 29 .. 536 562 .. 513 565 .. 0.90 13 ! 14.7 1.4 1.5e-06 0.024 1 30 [. 566 594 .. 566 597 .. 0.96 14 ? 0.8 4.7 0.034 5.5e+02 18 50 .] 601 637 .. 598 637 .. 0.80 15 ! 9.7 3.4 5.3e-05 0.86 8 43 .. 638 672 .. 637 677 .. 0.89 16 ! 20.5 15.6 2.3e-08 0.00037 2 49 .. 685 731 .. 684 731 .. 0.94 17 ? -1.9 0.0 0.22 3.6e+03 7 15 .. 732 739 .. 732 744 .. 0.81 18 ! 10.2 0.6 3.7e-05 0.61 1 15 [. 747 760 .. 747 767 .. 0.82 19 ! 21.0 14.2 1.5e-08 0.00025 1 39 [. 768 818 .. 768 821 .. 0.93 20 ! 24.3 25.2 1.5e-09 2.4e-05 1 50 [] 822 905 .. 822 905 .. 0.95 21 ! 8.8 7.5 0.00011 1.7 29 50 .] 905 926 .. 903 926 .. 0.96 22 ! 21.2 2.9 1.4e-08 0.00022 17 50 .] 926 959 .. 926 959 .. 0.96 23 ! 26.0 15.8 4.4e-10 7.1e-06 1 42 [. 964 1037 .. 964 1056 .. 0.86 24 ! 33.5 4.4 2e-12 3.3e-08 19 50 .] 1070 1101 .. 1059 1101 .. 0.95 25 ! 15.4 21.1 8.9e-07 0.015 1 50 [] 1106 1167 .. 1106 1167 .. 0.88 26 ? -2.8 0.5 0.42 6.8e+03 5 23 .. 1193 1224 .. 1189 1229 .. 0.73 27 ? -4.2 3.3 1 1.6e+04 6 42 .. 1243 1282 .. 1240 1290 .. 0.57 28 ? -2.2 1.0 0.28 4.6e+03 6 23 .. 1336 1366 .. 1324 1389 .. 0.63 29 ? -8.0 7.3 1 1.6e+04 6 36 .. 1385 1445 .. 1381 1455 .. 0.47 30 ? -0.6 10.3 0.086 1.4e+03 19 39 .. 1567 1588 .. 1546 1600 .. 0.73 31 ! 7.8 3.9 0.00021 3.4 1 25 [. 1615 1638 .. 1615 1641 .. 0.94 32 ! 12.8 0.4 5.8e-06 0.095 2 15 .. 1649 1661 .. 1649 1668 .. 0.82 33 ! 12.3 19.8 8.2e-06 0.13 1 37 [. 1669 1748 .. 1669 1750 .. 0.99 34 ! 10.5 2.7 3.1e-05 0.51 1 26 [. 1745 1769 .. 1745 1770 .. 0.93 35 ! 3.6 4.3 0.0043 71 5 26 .. 1771 1791 .. 1770 1791 .. 0.97 36 ! 13.9 4.5 2.7e-06 0.044 16 39 .. 1804 1827 .. 1802 1842 .. 0.87 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.9e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323213_2 40 LPAASPGPELSPVSLHRPSS 59 9*****************98 PP == domain 2 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323213_2 67 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 108 788********.***********************99765555 PP == domain 3 score: 25.4 bits; conditional E-value: 6.8e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323213_2 119 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 153 9***********.*******************9755 PP == domain 4 score: 13.1 bits; conditional E-value: 4.8e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323213_2 153 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 221 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323213_2 195 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 230 899********.7777777777777777655433.........333 PP == domain 6 score: 12.2 bits; conditional E-value: 8.9e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323213_2 240 PALASRWPLQ-AQLLSQDVISRPK 262 9*********.******9999995 PP == domain 7 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323213_2 289 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 317 9**.************************98 PP == domain 8 score: 19.7 bits; conditional E-value: 4.2e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323213_2 333 FGPVPVQLTATNVGPKLPQVKLSRPA 358 78889********************5 PP == domain 9 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323213_2 372 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 401 69***.**********************975 PP == domain 10 score: 15.9 bits; conditional E-value: 6.2e-07 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 r Lq + ++++s lsr s ++s+ p+l p+gLsrPss T323213_2 458 RTLQ-AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 496 88**.*********************************98 PP == domain 11 score: 1.6 bits; conditional E-value: 0.019 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323213_2 498 SQWPLQAKIVLKSASPGPTPS 518 577777655666666665554 PP == domain 12 score: 6.4 bits; conditional E-value: 0.00056 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323213_2 536 PALVCKWPLQEQNCLKSASPGPASCFP 562 9999******99999999999988776 PP == domain 13 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323213_2 566 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 594 8***********.****************9 PP == domain 14 score: 0.8 bits; conditional E-value: 0.034 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323213_2 601 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 637 56777788888888886656779999**********8 PP == domain 15 score: 9.7 bits; conditional E-value: 5.3e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323213_2 638 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 672 57777.999**********************98877 PP == domain 16 score: 20.5 bits; conditional E-value: 2.3e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323213_2 685 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 731 9********995..4689999**************************97 PP == domain 17 score: -1.9 bits; conditional E-value: 0.22 DUF4705 7 srrpLqapa 15 srrpLq ++ T323213_2 732 SRRPLQ-AQ 739 79****.66 PP == domain 18 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323213_2 747 PGPAPASRCPLQA-Q 760 9***********4.4 PP == domain 19 score: 21.0 bits; conditional E-value: 1.5e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323213_2 768 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 818 9*******************************9.89**********876666 PP == domain 20 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323213_2 822 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 905 8*********************************************6515699*****************************98 PP == domain 21 score: 8.8 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323213_2 905 LPASSPGPALPPGCVSRPDCCL 926 9********************9 PP == domain 22 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323213_2 926 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 959 6889****************************87 PP == domain 23 score: 26.0 bits; conditional E-value: 4.4e-10 DUF4705 1 PgpAPasrrpLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 Pg+APa+r++Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323213_2 964 PGSAPALRWRLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 1037 9******************************************877888*********************5543 PP == domain 24 score: 33.5 bits; conditional E-value: 2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323213_2 1070 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1101 589****************************9 PP == domain 25 score: 15.4 bits; conditional E-value: 8.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++glsrps+++ +Gp++ p +gL+ P CL T323213_2 1106 TGPALAVEQPLQ-APLLPPRGLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNACL 1167 8***********.************************99988887777777777777777776 PP == domain 26 score: -2.8 bits; conditional E-value: 0.42 DUF4705 5 PasrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323213_2 1193 LASHRPLPC*ersa*apclapaPAMLREVGVS 1224 58888887677777777777777777777665 PP == domain 27 score: -4.2 bits; conditional E-value: 1 DUF4705 6 asrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL ++ l p + + +++a+p+l ++g T323213_2 1243 ASHRPLPR*erla*APCLTLA---PPTLTPCLTPAPPTLTEVG 1282 566666555555563333322...4555555666666665555 PP == domain 28 score: -2.2 bits; conditional E-value: 0.28 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323213_2 1336 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 1366 5555554477777777777777777776665 PP == domain 29 score: -8.0 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGp 36 as+rpL p++l + p + + ++ a+p T323213_2 1385 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPP 1445 5666665555566655555555555555663333333333333221102223333444444 PP == domain 30 score: -0.6 bits; conditional E-value: 0.086 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323213_2 1567 SRRPLRAQLFLPAASLGPTPaS 1588 6777888888888888888752 PP == domain 31 score: 7.8 bits; conditional E-value: 0.00021 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323213_2 1615 PGPGQASRWPRQ-AQLLPSDGISRS 1638 9***********.********9985 PP == domain 32 score: 12.8 bits; conditional E-value: 5.8e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323213_2 1649 GPAWASRRPLQA-Q 1661 9**********4.4 PP == domain 33 score: 12.3 bits; conditional E-value: 8.2e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323213_2 1669 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1748 9***************************************************************.***************7 PP == domain 34 score: 10.5 bits; conditional E-value: 3.1e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA +++pLq ++ l +s++ +++ T323213_2 1745 PGPAFDFWWPLQ-AQNLTSSRPLQAR 1769 9***********.*******999876 PP == domain 35 score: 3.6 bits; conditional E-value: 0.0043 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp + ++ +++sgls+ps T323213_2 1771 PASRRPAR-AQPQPHSGLSTPS 1791 9*******.************7 PP == domain 36 score: 13.9 bits; conditional E-value: 2.7e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpklp 39 +l+ +++rps++LpvAs Gp + T323213_2 1804 LLPFGRFGRPSSCLPVASLGPAHS 1827 578889***************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.74 # Mc/sec: 7399.50 // Query: T323213_3 [L=1914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-36 124.0 88.5 1.2e-15 57.3 9.2 40.5 36 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 1.0 0.00021 3.4 4 24 .. 37 57 .. 36 73 .. 0.90 2 ? -0.8 15.8 0.1 1.6e+03 7 36 .. 114 142 .. 87 143 .. 0.73 3 ! 23.1 4.0 3.6e-09 5.9e-05 1 31 [. 140 169 .. 140 182 .. 0.88 4 ! 16.3 2.8 4.7e-07 0.0076 1 35 [. 183 216 .. 183 225 .. 0.90 5 ! 44.1 11.0 9.4e-16 1.5e-11 1 50 [] 227 275 .. 227 275 .. 0.99 6 ! 23.2 0.8 3.2e-09 5.3e-05 28 50 .] 274 296 .. 273 296 .. 0.97 7 ? -1.2 12.2 0.14 2.2e+03 20 41 .. 372 398 .. 301 401 .. 0.88 8 ? 0.8 3.4 0.031 5.1e+02 5 26 .. 402 422 .. 402 423 .. 0.94 9 ! 4.9 0.8 0.0017 28 28 47 .. 486 505 .. 478 508 .. 0.85 10 ? 1.7 1.3 0.017 2.8e+02 7 27 .. 508 527 .. 506 533 .. 0.90 11 ? -0.3 0.1 0.071 1.1e+03 7 24 .. 529 545 .. 527 548 .. 0.87 12 ! 9.6 9.3 5.9e-05 0.96 6 38 .. 549 591 .. 545 597 .. 0.89 13 ! 10.5 6.3 3e-05 0.49 1 33 [. 599 630 .. 599 630 .. 0.95 14 ! 3.7 2.8 0.0041 68 19 43 .. 637 662 .. 634 664 .. 0.80 15 ! 16.0 12.4 5.9e-07 0.0096 1 38 [. 652 709 .. 652 714 .. 0.87 16 ? 2.1 14.2 0.013 2.1e+02 1 49 [. 705 762 .. 705 763 .. 0.95 17 ? -0.9 8.5 0.11 1.7e+03 7 41 .. 784 816 .. 782 816 .. 0.86 18 ? 0.1 11.6 0.055 9e+02 3 26 .. 813 835 .. 802 835 .. 0.92 19 ! 15.4 1.9 9.1e-07 0.015 14 36 .. 846 868 .. 840 873 .. 0.91 20 ? 2.2 0.0 0.012 2e+02 27 39 .. 871 883 .. 870 885 .. 0.90 21 ! 6.3 11.3 0.00061 9.9 1 38 [. 878 924 .. 878 932 .. 0.85 22 ! 31.5 11.3 8.4e-12 1.4e-07 1 50 [] 953 1013 .. 953 1013 .. 0.95 23 ! 57.3 9.2 7.2e-20 1.2e-15 1 50 [] 1018 1065 .. 1018 1065 .. 0.99 24 ? -2.9 3.7 0.47 7.6e+03 5 31 .. 1066 1099 .. 1066 1109 .. 0.58 25 ? -1.0 14.9 0.12 1.9e+03 5 50 .] 1099 1156 .. 1095 1156 .. 0.78 26 ? -0.1 1.9 0.06 9.8e+02 13 23 .. 1217 1240 .. 1208 1260 .. 0.59 27 ? -4.6 4.3 1 1.6e+04 13 42 .. 1266 1320 .. 1255 1323 .. 0.58 28 ? -2.8 1.2 0.44 7.1e+03 6 23 .. 1352 1382 .. 1351 1406 .. 0.66 29 ? -1.0 0.1 0.11 1.9e+03 6 13 .. 1401 1408 .. 1397 1423 .. 0.74 30 ? -2.8 0.2 0.44 7.2e+03 4 12 .. 1453 1461 .. 1453 1503 .. 0.76 31 ! 2.9 0.9 0.007 1.1e+02 8 27 .. 1557 1575 .. 1554 1577 .. 0.87 32 ! 11.1 11.0 2e-05 0.32 14 48 .. 1616 1662 .. 1611 1663 .. 0.74 33 ? -5.7 12.3 1 1.6e+04 9 45 .. 1666 1711 .. 1665 1716 .. 0.62 34 ? -4.8 14.2 1 1.6e+04 7 46 .. 1716 1768 .. 1714 1771 .. 0.80 35 ? 0.2 1.8 0.051 8.3e+02 16 34 .. 1782 1800 .. 1769 1806 .. 0.72 36 ! 22.8 3.2 4.4e-09 7.1e-05 2 36 .. 1812 1845 .. 1811 1852 .. 0.91 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00021 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323213_3 37 APTSRQPLQAQNFLQSASTDQ 57 9********999999987655 PP == domain 2 score: -0.8 bits; conditional E-value: 0.1 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323213_3 114 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 142 345555.**********************9 PP == domain 3 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323213_3 140 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 169 9***********.*****************9 PP == domain 4 score: 16.3 bits; conditional E-value: 4.7e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323213_3 183 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 216 57*******9996..7*******************9 PP == domain 5 score: 44.1 bits; conditional E-value: 9.4e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323213_3 227 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 275 8***********.************************************9 PP == domain 6 score: 23.2 bits; conditional E-value: 3.2e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323213_3 274 CLLVAYEGPKSPQVDLSRPSSCL 296 9*********************9 PP == domain 7 score: -1.2 bits; conditional E-value: 0.14 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323213_3 372 NSLCRPCSCLPGASPGPALaswrlPQA 398 5799*************9965555555 PP == domain 8 score: 0.8 bits; conditional E-value: 0.031 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323213_3 402 PACQQPQQ-AQLFPHSGPFRPN 422 9*******.*********9996 PP == domain 9 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323213_3 486 LLQLASPDQALPPSGLYRPK 505 6889***************6 PP == domain 10 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323213_3 508 SSQPLQ-GQLLATGGFCRPKS 527 689***.***********976 PP == domain 11 score: -0.3 bits; conditional E-value: 0.071 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323213_3 529 SSQPLH-TQLLSVSGLCR 545 78****.*****999866 PP == domain 12 score: 9.6 bits; conditional E-value: 5.9e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323213_3 549 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 591 788999999999999999********************99888 PP == domain 13 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323213_3 599 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 630 8***********.*****9999999******98 PP == domain 14 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323213_3 637 SRGLNGPSPCLSAASTGPAStSQWAL 662 789999999*****999976566555 PP == domain 15 score: 16.0 bits; conditional E-value: 5.9e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323213_3 652 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 709 688888888888888888888888888888888**********************865 PP == domain 16 score: 2.1 bits; conditional E-value: 0.013 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323213_3 705 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 762 89999999*************9899******************************997 PP == domain 17 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323213_3 784 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 816 679***77789********8..8889999999886 PP == domain 18 score: 0.1 bits; conditional E-value: 0.055 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323213_3 813 RPPASRRPAQ-AQPQPHSGLSTPS 835 669*******.************7 PP == domain 19 score: 15.4 bits; conditional E-value: 9.1e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323213_3 846 PKLLPLGRFGRPSSRLPVASSGP 868 8999******************9 PP == domain 20 score: 2.2 bits; conditional E-value: 0.012 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323213_3 871 SFLTTAFPGPVFP 883 79*********97 PP == domain 21 score: 6.3 bits; conditional E-value: 0.00061 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323213_3 878 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 924 7888889**************766651678***************86 PP == domain 22 score: 31.5 bits; conditional E-value: 8.4e-12 DUF4705 1 PgpAPasrrpLqa..........pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pgp+ asr+pLq+ p+ l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323213_3 953 PGPGQASRWPLQDqllpsdgvsrPDcCLPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1013 9*********************97636999*****************************87 PP == domain 23 score: 57.3 bits; conditional E-value: 7.2e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323213_3 1018 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1065 9*********************************************..97 PP == domain 24 score: -2.9 bits; conditional E-value: 0.47 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpv 31 Pas++ L a p+ l +s s+++p T323213_3 1066 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPT 1099 7777777766665555555555556555.....333444 PP == domain 25 score: -1.0 bits; conditional E-value: 0.12 DUF4705 5 PasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa l+ +++ p + +++As+G+++ pa++ +Pss+L T323213_3 1099 TASRWPVQAqlwl*nslcrlRSCLPEASPG-PALAPTAASRGQVPacLPAARVQPSSSL 1156 599999998888888888876677777666.6678899999988777679999999987 PP == domain 26 score: -0.1 bits; conditional E-value: 0.06 DUF4705 13 a.............paslqasgls 23 p++l+ +gls T323213_3 1217 C*ersa*apclapaPPTLREVGLS 1240 455555555555555555555555 PP == domain 27 score: -4.6 bits; conditional E-value: 1 DUF4705 13 a........................paslqas.glsrpsaqLpvAsaGpklppag 42 p++l + + p + + +++a+p l +++ T323213_3 1266 R*plashqplpr*qrsa*apcltlaPPTLTPClTPVPPTLIPCLTPAPPMLTEVS 1320 4444444444447778887777777555554313446666666777777776665 PP == domain 28 score: -2.8 bits; conditional E-value: 0.44 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323213_3 1352 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 1382 7888887777777777777777777777666 PP == domain 29 score: -1.0 bits; conditional E-value: 0.11 DUF4705 6 asrrpLqa 13 as+rpL++ T323213_3 1401 ASHRPLHT 1408 999***95 PP == domain 30 score: -2.8 bits; conditional E-value: 0.44 DUF4705 4 APasrrpLq 12 A as+rpL T323213_3 1453 ALASHRPLP 1461 789999994 PP == domain 31 score: 2.9 bits; conditional E-value: 0.007 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323213_3 1557 ARPLQ-THLQPPGVLSGPSS 1575 69***.99999999999987 PP == domain 32 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323213_3 1616 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1662 555699*******************6666666666666666666666 PP == domain 33 score: -5.7 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323213_3 1666 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1711 7888.666666654222222277778886577888865558888888 PP == domain 34 score: -4.8 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323213_3 1716 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1768 67999998888644344444678999999999999999999999999999999 PP == domain 35 score: 0.2 bits; conditional E-value: 0.051 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323213_3 1782 SLTADSPRPASSRLTAASP 1800 5677777788888888875 PP == domain 36 score: 22.8 bits; conditional E-value: 4.4e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323213_3 1812 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1845 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 7500.86 // Query: T352638_1 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 5399.17 // Query: T352638_2 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 435 (0.0266773); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 5114.97 // Query: T352638_3 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 4863.41 // Query: T369316_1 [L=3205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.75 # Mc/sec: 12225.28 // Query: T369316_2 [L=3205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.72 # Mc/sec: 12734.67 // Query: T369316_3 [L=3204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.78 # Mc/sec: 11751.41 // Query: T322053_1 [L=1578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-29 100.0 219.1 1.8e-14 53.5 12.6 19.8 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.1 0.13 2.1e+03 38 47 .. 703 712 .. 702 713 .. 0.75 2 ? 0.7 0.1 0.036 5.9e+02 7 34 .. 715 741 .. 710 743 .. 0.88 3 ! 31.2 5.2 1e-11 1.7e-07 3 49 .. 743 788 .. 741 789 .. 0.96 4 ! 13.4 6.3 3.7e-06 0.061 24 47 .. 784 807 .. 783 811 .. 0.93 5 ? 1.5 1.0 0.02 3.2e+02 34 49 .. 815 830 .. 813 831 .. 0.92 6 ? -13.9 23.6 1 1.6e+04 8 31 .. 853 913 .. 831 934 .. 0.57 7 ? 1.1 7.9 0.025 4.1e+02 6 46 .. 919 951 .. 915 954 .. 0.54 8 ! 33.6 11.7 1.8e-12 3e-08 2 50 .] 940 988 .. 939 988 .. 0.89 9 ! 9.0 4.6 8.7e-05 1.4 29 50 .] 988 1009 .. 986 1009 .. 0.93 10 ! 18.4 2.4 1e-07 0.0017 17 50 .] 1009 1042 .. 1009 1042 .. 0.95 11 ! 53.5 12.6 1.1e-18 1.8e-14 1 50 [] 1047 1094 .. 1047 1094 .. 0.99 12 ? 1.4 9.3 0.022 3.5e+02 2 27 .. 1158 1183 .. 1157 1209 .. 0.69 13 ! 5.7 18.6 0.00093 15 13 46 .. 1221 1268 .. 1184 1271 .. 0.67 14 ? -2.0 11.6 0.25 4e+03 9 27 .. 1274 1291 .. 1273 1324 .. 0.69 15 ? -2.1 2.6 0.26 4.2e+03 7 22 .. 1325 1339 .. 1323 1352 .. 0.59 16 ! 17.2 15.6 2.4e-07 0.0039 1 38 [. 1353 1434 .. 1353 1443 .. 0.96 17 ! 3.0 0.2 0.0068 1.1e+02 2 22 .. 1431 1450 .. 1430 1454 .. 0.86 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322053_1 703 LPPGSLSRPR 712 5888888885 PP == domain 2 score: 0.7 bits; conditional E-value: 0.036 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322053_1 715 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 741 678889.9************99999877 PP == domain 3 score: 31.2 bits; conditional E-value: 1e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322053_1 743 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 788 689*******.************************************ PP == domain 4 score: 13.4 bits; conditional E-value: 3.7e-06 DUF4705 24 rpsaqLpvAsaGpklppagLsrPs 47 rps++ +As+Gp lpp+gL rP+ T322053_1 784 RPSSCFLAASPGPALPPGGLCRPR 807 8**********************6 PP == domain 5 score: 1.5 bits; conditional E-value: 0.02 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322053_1 815 QGQLLPPGALCRPKSS 830 7999*********997 PP == domain 6 score: -13.9 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322053_1 853 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 913 5777766666666666653333333333333333333323322111134555555555555 PP == domain 7 score: 1.1 bits; conditional E-value: 0.025 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+s +L +AsaGp + L+rP T322053_1 919 ASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 951 5555.5555555555.......5555555555554555555 PP == domain 8 score: 33.6 bits; conditional E-value: 1.8e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322053_1 940 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 988 9******9555.7765499***************************9976 PP == domain 9 score: 9.0 bits; conditional E-value: 8.7e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322053_1 988 LRASSPGPALPPGCVSRPDSCL 1009 7799*****************9 PP == domain 10 score: 18.4 bits; conditional E-value: 1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322053_1 1009 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1042 68899999************************87 PP == domain 11 score: 53.5 bits; conditional E-value: 1.1e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322053_1 1047 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1094 9*********************************************..97 PP == domain 12 score: 1.4 bits; conditional E-value: 0.022 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322053_1 1158 GRGWASsSWPLQ-THLQPPGVLSGPSS 1183 78999637****.88888888887776 PP == domain 13 score: 5.7 bits; conditional E-value: 0.00093 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322053_1 1221 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1268 25578889********************55555555555555555555 PP == domain 14 score: -2.0 bits; conditional E-value: 0.25 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322053_1 1274 RPLQ-AQLQPPGGLCRPKS 1291 9***.99999999888865 PP == domain 15 score: -2.1 bits; conditional E-value: 0.26 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322053_1 1325 SSQPLQ-AQLLLPQWP 1339 679***.666555433 PP == domain 16 score: 17.2 bits; conditional E-value: 2.4e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpkl 38 PgpA +++pLqa p +l+ ++rps++LpvAs Gp T322053_1 1353 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAH 1434 9*******************************************************************************87 PP == domain 17 score: 3.0 bits; conditional E-value: 0.0068 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T322053_1 1431 GPAHSSQRPFQ-APFFPSGSL 1450 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 7523.98 // Query: T322053_2 [L=1578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-47 157.8 254.3 2.3e-18 66.0 10.8 21.3 21 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.5 0.34 5.6e+03 7 19 .. 97 108 .. 87 124 .. 0.62 2 ? -2.1 0.2 0.27 4.4e+03 16 46 .. 402 432 .. 394 434 .. 0.82 3 ! 21.6 0.9 1.1e-08 0.00017 27 48 .. 702 723 .. 690 723 .. 0.94 4 ! 4.6 3.1 0.0021 34 2 39 .. 731 768 .. 731 772 .. 0.86 5 ! 37.1 19.5 1.5e-13 2.4e-09 1 50 [] 783 841 .. 783 841 .. 0.96 6 ! 11.7 4.6 1.3e-05 0.21 26 49 .. 838 861 .. 838 863 .. 0.90 7 ! 6.1 0.9 0.00072 12 24 38 .. 870 884 .. 866 890 .. 0.86 8 ! 2.9 11.5 0.0074 1.2e+02 1 38 [. 880 914 .. 880 929 .. 0.73 9 ? -1.0 19.4 0.12 1.9e+03 1 39 [. 905 966 .. 905 967 .. 0.84 10 ! 5.2 14.9 0.0014 23 1 39 [. 961 1009 .. 961 1015 .. 0.87 11 ! 6.3 1.7 0.00063 10 1 18 [. 1003 1019 .. 1003 1035 .. 0.75 12 ! 16.5 2.3 4.2e-07 0.0068 1 26 [. 1036 1060 .. 1036 1062 .. 0.95 13 ! 17.5 5.8 1.9e-07 0.0031 1 30 [. 1069 1108 .. 1069 1110 .. 0.93 14 ! 14.5 10.7 1.7e-06 0.028 18 50 .] 1163 1195 .. 1148 1195 .. 0.87 15 ! 22.8 6.6 4.2e-09 6.9e-05 16 50 .] 1194 1228 .. 1193 1228 .. 0.96 16 ! 66.0 10.8 1.4e-22 2.3e-18 1 50 [] 1233 1282 .. 1233 1282 .. 0.99 17 ! 12.1 1.2 9.7e-06 0.16 25 44 .. 1278 1297 .. 1278 1298 .. 0.95 18 ! 16.4 7.3 4.5e-07 0.0074 20 49 .. 1305 1334 .. 1303 1336 .. 0.90 19 ? -0.1 2.1 0.062 1e+03 19 46 .. 1345 1376 .. 1343 1379 .. 0.88 20 ? 1.2 3.2 0.024 3.8e+02 4 29 .. 1397 1421 .. 1394 1421 .. 0.88 21 ! 18.6 6.9 9e-08 0.0015 2 35 .. 1420 1452 .. 1419 1459 .. 0.92 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.34 DUF4705 7 srrpLqapaslqa 19 ++r+L+ p T322053_2 97 GQRRLH-PENPET 108 677787.655444 PP == domain 2 score: -2.1 bits; conditional E-value: 0.27 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322053_2 402 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 432 5677788888888899999898888999888 PP == domain 3 score: 21.6 bits; conditional E-value: 1.1e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322053_2 702 SYLPAASPGPELSPVGLHRPSS 723 67******************98 PP == domain 4 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322053_2 731 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 768 67789999888.899********************9854 PP == domain 5 score: 37.1 bits; conditional E-value: 1.5e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322053_2 783 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 841 9*****************99997888999****************************98 PP == domain 6 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 26 saqLpvAsaGpklppagLsrPssC 49 s+ L +As+G k p ++LsrPss+ T322053_2 838 SSSLSAASPGAKVPRVSLSRPSSS 861 6889*****************975 PP == domain 7 score: 6.1 bits; conditional E-value: 0.00072 DUF4705 24 rpsaqLpvAsaGpkl 38 +ps++L +A++Gp + T322053_2 870 QPSSCLWAAFPGPAF 884 8************76 PP == domain 8 score: 2.9 bits; conditional E-value: 0.0074 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322053_2 880 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 914 9***********..666665.88888999999888876 PP == domain 9 score: -1.0 bits; conditional E-value: 0.12 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322053_2 905 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 966 799999999999999999999999999999988877788888887764489********997 PP == domain 10 score: 5.2 bits; conditional E-value: 0.0014 DUF4705 1 PgpAPasrrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 Pgp +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322053_2 961 PGPVFPFRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1009 7888889**************8888777549**************9854 PP == domain 11 score: 6.3 bits; conditional E-value: 0.00063 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322053_2 1003 PGPTPASQQPLW-TQCLP 1019 9**********9.77766 PP == domain 12 score: 16.5 bits; conditional E-value: 4.2e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322053_2 1036 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1060 9***********.9***********7 PP == domain 13 score: 17.5 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLp 30 P+pA+asrrpLqa pas+q s l + s+++ T322053_2 1069 PRPAWASRRPLQAqvvlksaspgPASQQVSKLFWLSSCPA 1108 99**************************999999999985 PP == domain 14 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322053_2 1163 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1195 899***************************987 PP == domain 15 score: 22.8 bits; conditional E-value: 4.2e-09 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322053_2 1194 GLPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1228 5899*****************************87 PP == domain 16 score: 66.0 bits; conditional E-value: 1.4e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322053_2 1233 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1282 9***********************************************98 PP == domain 17 score: 12.1 bits; conditional E-value: 9.7e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322053_2 1278 PSSSLPAASAGLSRPQVGLE 1297 99****************96 PP == domain 18 score: 16.4 bits; conditional E-value: 4.5e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322053_2 1305 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1334 67888**********************975 PP == domain 19 score: -0.1 bits; conditional E-value: 0.062 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322053_2 1345 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1376 67888899999999***99999999******9 PP == domain 20 score: 1.2 bits; conditional E-value: 0.024 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322053_2 1397 RPASSR-LTAPSPVQSSCLSATSAGP 1421 599999.*99999*******999976 PP == domain 21 score: 18.6 bits; conditional E-value: 9e-08 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322053_2 1420 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1452 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 6542.59 // Query: T322053_3 [L=1578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-07 31.0 218.3 0.0028 17.7 6.0 20.6 18 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.2 0.63 1e+04 23 30 .. 150 157 .. 129 160 .. 0.61 2 ! 8.1 1.0 0.00016 2.7 4 24 .. 701 721 .. 700 729 .. 0.88 3 ? -0.3 2.7 0.072 1.2e+03 1 25 [. 751 774 .. 751 774 .. 0.75 4 ? -0.9 0.3 0.11 1.8e+03 41 49 .. 790 798 .. 783 799 .. 0.82 5 ? -1.6 1.1 0.18 3e+03 7 15 .. 799 806 .. 793 812 .. 0.76 6 ! 14.8 1.3 1.4e-06 0.022 1 14 [. 814 826 .. 814 833 .. 0.90 7 ! 3.6 18.1 0.0044 71 1 50 [] 835 900 .. 835 900 .. 0.88 8 ? -8.3 19.0 1 1.6e+04 3 31 .. 871 946 .. 869 949 .. 0.62 9 ! 2.6 9.9 0.0089 1.4e+02 6 49 .. 955 997 .. 952 998 .. 0.91 10 ? -4.9 23.2 1 1.6e+04 13 42 .. 1004 1065 .. 977 1084 .. 0.66 11 ? 2.2 1.1 0.012 1.9e+02 21 35 .. 1100 1114 .. 1087 1121 .. 0.84 12 ! 5.8 7.8 0.00089 15 16 43 .. 1171 1199 .. 1151 1206 .. 0.74 13 ! 17.7 6.0 1.7e-07 0.0028 1 26 [. 1222 1246 .. 1222 1248 .. 0.96 14 ! 12.2 0.5 8.8e-06 0.14 2 15 .. 1256 1268 .. 1256 1275 .. 0.82 15 ! 14.9 0.7 1.3e-06 0.021 1 13 [. 1276 1288 .. 1276 1306 .. 0.87 16 ! 6.8 12.2 0.00044 7.2 1 46 [. 1308 1354 .. 1308 1356 .. 0.79 17 ! 2.8 0.7 0.0078 1.3e+02 29 50 .] 1358 1380 .. 1358 1380 .. 0.86 18 ! 16.6 16.9 3.8e-07 0.0062 2 39 .. 1386 1445 .. 1385 1452 .. 0.90 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.63 DUF4705 23 srpsaqLp 30 rp++ Lp T322053_3 150 TRPPSLLP 157 35555555 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00016 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322053_3 701 APTSRQPLQAQNFLQSASTDQ 721 9********999999987655 PP == domain 3 score: -0.3 bits; conditional E-value: 0.072 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322053_3 751 TGTAPSLQWPL*tQ---LLPPSLLSRP 774 799*******9744...6776666665 PP == domain 4 score: -0.9 bits; conditional E-value: 0.11 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322053_3 790 GSLSRPSSS 798 589999997 PP == domain 5 score: -1.6 bits; conditional E-value: 0.18 DUF4705 7 srrpLqapa 15 srrpLq ++ T322053_3 799 SRRPLQ-AQ 806 89****.65 PP == domain 6 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322053_3 814 PGPAPASRRPLQ-A 826 9***********.5 PP == domain 7 score: 3.6 bits; conditional E-value: 0.0044 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322053_3 835 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 900 9***********999**********97777666666778889************9999...88899998 PP == domain 8 score: -8.3 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322053_3 871 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 946 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 9 score: 2.6 bits; conditional E-value: 0.0089 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322053_3 955 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 997 59*****.************9...679999998899*********97 PP == domain 10 score: -4.9 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322053_3 1004 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1065 36666666666666666666666666666665567779********************5543 PP == domain 11 score: 2.2 bits; conditional E-value: 0.012 DUF4705 21 glsrpsaqLpvAsaG 35 ++ ++aqLp A+a T322053_3 1100 FFGLAPAQLPTAFAA 1114 599**********85 PP == domain 12 score: 5.8 bits; conditional E-value: 0.00089 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322053_3 1171 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1199 3356889***************9887776 PP == domain 13 score: 17.7 bits; conditional E-value: 1.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322053_3 1222 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1246 9***********.***********96 PP == domain 14 score: 12.2 bits; conditional E-value: 8.8e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322053_3 1256 GPAWASRQPLQA-Q 1268 9**********4.4 PP == domain 15 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322053_3 1276 PGPAPASRRPLQA 1288 9***********7 PP == domain 16 score: 6.8 bits; conditional E-value: 0.00044 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322053_3 1308 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1354 9***********999*****99888765.4566666544777778777 PP == domain 17 score: 2.8 bits; conditional E-value: 0.0078 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322053_3 1358 LLVASSGPELdLQSAFAGPASCL 1380 789*******8677888999998 PP == domain 18 score: 16.6 bits; conditional E-value: 3.8e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322053_3 1386 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1445 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 6019.19 // Query: T100535_1 [L=1982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0002 21.7 0.0 0.00039 20.8 0.0 1.4 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.0 2.4e-08 0.00039 6 46 .. 493 537 .. 489 538 .. 0.87 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 2.4e-08 HHHHHB-TTSSS...SSCCHHHHHHHHT.TCTSSST-SEEEEEES CS RnaseA 6 Ferqhvdskksk...tsekyCnkamkrr.nmtkkrCkkvntfihe 46 F+++h+d+++s +++yC+ +m+ r +++++C++++tfih T100535_1 493 FSTRHLDNPRSWvprGHHRYCDVMMRCRwLIYRGKCEQIHTFIHR 537 999*****99878899999*******9934566**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 8100.24 // Query: T100535_2 [L=1982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.72 # Mc/sec: 7875.23 // Query: T100535_3 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-05 24.7 2.9 5.7e-05 23.5 2.9 1.5 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 2.9 3.5e-09 5.7e-05 48 96 .. 538 588 .. 533 596 .. 0.92 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 3.5e-09 HHHHHGGGGSTEEECTTS..SSSEEEESSBEEEEEEEEESSSCTTC-EEEE CS RnaseA 48 leevkavCktknvtcknn..rkncheskskvsvttCkltggskkpnCkYke 96 l++++++C+t+ +c+n+ ch+s++ v+vt+C ++g++ +C+Y++ T100535_3 538 LTTIADFCRTPPLPCTNSpsMCSCHNSTHDVNVTDCFASTGTRPLHCHYQK 588 5789************9887889********************999***95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.78 # Mc/sec: 7265.77 // Query: T022844_1 [L=1179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 4960.17 // Query: T022844_2 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 949 (0.0581994); expected 326.1 (0.02) Passed bias filter: 549 (0.0336686); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.65 # Mc/sec: 5184.70 // Query: T022844_3 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 786 (0.0482031); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 4680.64 // Query: T123512_1 [L=1239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 5290.40 // Query: T123512_2 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 5059.58 // Query: T123512_3 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 5448.78 // Query: T332113_1 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 3905.03 // Query: T332113_2 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3445.62 // Query: T332113_3 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 4686.04 // Query: T000473_1 [L=3289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.31s 00:00:01.63 Elapsed: 00:00:00.74 # Mc/sec: 12715.23 // Query: T000473_2 [L=3289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.42s 00:00:01.80 Elapsed: 00:00:00.77 # Mc/sec: 12219.83 // Query: T000473_3 [L=3289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.79 # Mc/sec: 11910.47 // Query: T155826_1 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 3433.00 // Query: T155826_2 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 3826.95 // Query: T155826_3 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 3765.22 // Query: T089225_1 [L=2279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-11 42.0 5.1 2.2e-08 33.8 0.6 2.2 2 Gag_p30 Gag P30 core shell protein 1.7e-06 28.1 0.0 2.8e-06 27.4 0.0 1.3 1 rve Integrase core domain 8.7e-06 25.8 0.0 1.7e-05 24.9 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.057 13.1 0.0 0.13 11.9 0.0 1.6 1 rve_3 Integrase core domain 0.11 13.0 0.1 0.19 12.3 0.1 1.3 1 Asp_protease_2 Aspartyl protease 0.2 12.1 0.0 0.33 11.4 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.4 9.1e-05 0.25 2 20 .. 92 110 .. 91 111 .. 0.92 2 ! 33.8 0.6 8e-12 2.2e-08 3 43 .. 111 151 .. 109 159 .. 0.94 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 9.1e-05 Gag_p30 2 ywpfsasdlynwktnnpsf 20 y pf+++dl+nwk+n ps T089225_1 92 YQPFTSADLFNWKNNTPSH 110 89***************85 PP == domain 2 score: 33.8 bits; conditional E-value: 8e-12 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwd 43 pf+++dl nwk+n ps++++pq++ l+ +i+ th+ptw T089225_1 111 QPFTSADLLNWKNNTPSYTKKPQAMIDLLPTIIQTHNPTWA 151 69**************************************6 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 1e-09 2.8e-06 54 117 .. 1332 1394 .. 1330 1396 .. 0.90 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 1e-09 rve 54 lleravarfggvepervlsDngseytskafreflael.girvsftrpgrpqdnGkvErfnrtlkd 117 l++ a +++g p+ + sDng++++ ++ + a gi+++++ ++rpq+ Gkv r+nrt+k+ T089225_1 1332 LHQDAQMWRFGL-PLPIGSDNGPAFV-ADLVQKTAMV*GITWKLHTTYRPQSSGKVDRMNRTIKN 1394 78899999***9.*************.567777788899************************98 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 6.2e-09 1.7e-05 12 88 .. 435 506 .. 433 511 .. 0.87 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 6.2e-09 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnll 88 ggk ie+l+DtGA+++v++ P + k++ + G++g ++++ + ++ +++ ++l +pe+p+ ll T089225_1 435 GGKDIEFLVDTGAEHSVVTTPLTPLS----KKTIDIIGATGVLaKQAFCLPWTCTVAGHEVIY--EFLYMPECPLSLL 506 6899**********************....9999999**999967777777777777777777..9********9976 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 4.8e-05 0.13 2 30 .. 1368 1396 .. 1368 1404 .. 0.93 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4.8e-05 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdel 30 gi++++ ++Pq g+v ++n+t+++ l T089225_1 1368 GITWKLHTTYRPQSSGKVDRMNRTIKNSL 1396 79************************976 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 7.2e-05 0.19 6 26 .. 435 455 .. 433 471 .. 0.91 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 7.2e-05 Asp_protease_2 6 nGkpvrfllDTGasttlispe 26 +Gk+++fl+DTGa ++++++ T089225_1 435 GGKDIEFLVDTGAEHSVVTTP 455 699**************9986 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00012 0.33 7 26 .. 436 455 .. 433 461 .. 0.90 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00012 TEEEEEEEETT-SS-EEEHH CS gag-asp_proteas 7 gkpvkflvDTGAsstiisee 26 gk+++flvDTGA+++++++ T089225_1 436 GKDIEFLVDTGAEHSVVTTP 455 899*************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 9055.32 // Query: T089225_2 [L=2278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-20 73.5 0.1 2.2e-20 73.0 0.1 1.2 1 Gag_p30 Gag P30 core shell protein 2.3e-07 30.8 0.2 6.5e-07 29.4 0.2 1.9 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.0 0.1 2.7e-24 2.2e-20 90 193 .. 199 302 .. 178 320 .. 0.87 Alignments for each domain: == domain 1 score: 73.0 bits; conditional E-value: 2.7e-24 Gag_p30 90 trpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaafle.rlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrle 188 t +wd + + ++l+ yr+ ll gl+ +++ tn+ kv ev+qgk espa f rl eay +yt +dpe+pe++ + ++++ qsa d+r+klq+ T089225_2 199 TDLQWDPNERQVMQRLNRYRESLLEGLKRGSQKATNINKVSEVIQGKGESPAQF-Y*RLCEAYLMYTCFDPESPENQHMINMALVSQSAEDLRRKLQKQA 297 5568999999999**************************************998.888***************************************987 PP Gag_p30 189 glqea 193 ++ ++ T089225_2 298 EFAGM 302 76554 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 0.2 7.9e-11 6.5e-07 1 38 [. 1265 1302 .. 1265 1303 .. 0.99 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 7.9e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 Hk+tHlG++ ++ll ++++ ++++++++V+++C++C T089225_2 1265 HKTTHLGEESFEKLLGWYFYISHLSALAKTVAQQCVTC 1302 ************************************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.79 # Mc/sec: 8249.33 // Query: T089225_3 [L=2278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-18 66.6 0.1 4e-18 65.8 0.1 1.3 1 RNase_H RNase H 6.1e-13 48.7 0.0 1.1e-12 47.8 0.0 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.00026 20.4 0.3 0.00058 19.3 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.8 0.1 7.4e-22 4e-18 5 142 .. 1058 1199 .. 1056 1200 .. 0.83 Alignments for each domain: == domain 1 score: 65.8 bits; conditional E-value: 7.4e-22 EEEEEEEEECTT.TEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgns.geggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvk 99 +Y D s++ n+ ge+++++ + + + + +++l++ +++++aEL+A+i+aL+ + ++++vniyt S+Y++ +++ + k+++ +s +k++k T089225_3 1058 ELYMDRSSFVNP*GERCVAYaAVTLD-TVTEAKSLPQGTSAQKAELIALIQALElS--EGKTVNIYTNSRYAFLTLQMHGALYKEKGL-LNSGGKDIK 1151 589********888887777444444.4588899999*****************55..9***************66654444455555.5888889*9 PP T.HHHHHHHHHCHCSSEEEEEE-SCC..SSS..CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgH..aGd..pkgNemaDrlAkeaa 142 +e+ +ll+++ ++++v ++h++gH a+ + gN +aD+ A++aa T089225_3 1152 YqQEILQLLEAVWEPQRVAVMHCRGHq*ASTsiALGNSQADSEARKAA 1199 889***********************884544688**********998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.8 0.0 2e-16 1.1e-12 71 222 .] 682 809 .. 637 809 .. 0.89 Alignments for each domain: == domain 1 score: 47.8 bits; conditional E-value: 2e-16 EEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB..--ST-TTHHHHHHHHHHHHHTT-T......TEEECTT CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkg..lpqGsvlSPllfnlfmnellrelrkrakgvtllrYaD 168 + lDlk+aF+s++l+ +++kl+af+ +++ s+ ++++ l+qG+++S ++f ++ + l+++ +r g++ll+Y+D T089225_3 682 STCLDLKDAFFSIRLAPESQKLFAFQWEDP---------------------GSGVTTQYTWt*LRQGFKNSLTIFGEALAQDLQKFPSRDLGCVLLQYID 760 578*************************66.....................5688888888566*************************9********** PP EEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 169 DililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 D l+ + + + + +++ +l+++g+k++++K +++ +++v yLG+t+ T089225_3 761 DPLLGHPTAFGCAKGTDTLLWHLEDCGYKVSKKKAQIC-----KQQVCYLGFTI 809 **************************************.....9********97 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.3 1.1e-07 0.00058 3 19 .] 2127 2143 .. 2126 2143 .. 0.96 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 1.1e-07 DUF1725 3 agKWMELEnIILSEisQ 19 ag+WMELE ILS+ +Q T089225_3 2127 AGTWMELEVLILSKQTQ 2143 8************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.79 # Mc/sec: 8249.33 // Query: T235279_1 [L=1062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.71 # Mc/sec: 4279.16 // Query: T235279_2 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 4336.20 // Query: T235279_3 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 4530.36 // Query: T230568_1 [L=3175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-69 234.4 1.3 1.7e-69 233.6 0.3 1.8 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein 7e-65 217.8 2.8 1.3e-64 216.9 2.8 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.5e-28 98.5 5.6 4.2e-28 97.1 5.6 1.8 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 2.1e-27 94.7 0.2 4.9e-27 93.5 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 7.5e-16 57.5 0.0 2.3e-15 55.9 0.0 1.9 1 RVT_thumb Reverse transcriptase thumb domain 4.4e-10 39.2 0.0 8.8e-10 38.2 0.0 1.5 1 dUTPase dUTPase 2.1e-06 26.8 1.2 4.4e-06 25.8 1.2 1.5 1 IN_DBD_C Integrase DNA binding domain 1e-05 25.3 2.5 1e-05 25.3 2.5 3.4 3 zf-CCHC Zinc knuckle 0.0012 18.3 0.1 0.0025 17.3 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.0058 16.4 0.0 0.0058 16.4 0.0 1.8 2 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.6 0.3 1.1e-72 1.7e-69 1 205 [] 545 758 .. 545 758 .. 0.95 2 ? -1.9 0.0 1.4 2.3e+03 20 61 .. 1898 1940 .. 1892 1948 .. 0.82 Alignments for each domain: == domain 1 score: 233.6 bits; conditional E-value: 1.1e-72 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++v+qyg +sp++++l+d++a++ +p+d+e+l+++ ++s+ l+ +++w+++++e+ +r n+a ++++i++d+llgtg+ ++++q+ T230568_1 545 MKMLKDIKEGVKQYGSNSPYIRTLLDSIAHGNrlTPYDWEILAKSslSSSQYLQfKTWWIDGVQEQ--VRKNQATkPTVNIDADQLLGTGPnwSTINQQS 642 8******************************999**********976677778899**********..66666666***************99999**** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knstl.ed 187 +mqn e++eqvr+++l+a+ ki+++g+ +++irQG+kEpy+dfvaRl++a++k+++d++a +v+v+ +ayeNANpeCq+++kpl+ ++ ++ + T230568_1 643 VMQN-EAIEQVRAICLRAWGKIQDPGTAF-PINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPECQSAIKPLKgkvpAGVDViTE 740 ****.************************.9*********************************************************9998788888** PP Gag_p24 188 mlraCqgvggavhkarvl 205 +++aC+g+gga+hka+++ T230568_1 741 YVKACDGIGGAMHKAMLM 758 ****************98 PP == domain 2 score: -1.9 bits; conditional E-value: 1.4 Gag_p24 20 eviqlidalaeqalpkdlekllar.vgssqlaaqlwkeeleee 61 +++++++ +q ++ ++l+ + + ++++ +wk++ + T230568_1 1898 YTLNVLNIYRNQTTTSAEQHLTGKrNSPHEGKLIWWKDNKNKT 1940 88999999999**9999999996547789999****9987766 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 216.9 2.8 8e-68 1.3e-64 5 138 .. 2090 2219 .. 2090 2219 .. 0.98 Alignments for each domain: == domain 1 score: 216.9 bits; conditional E-value: 8e-68 HERV-K_env_2 5 mdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqdfs 99 mdnpiev vn+s wvpgp+dd+cpa+pe egmm+nisigy ypp+clg+apgclmp+ qnwlvevptvs srftyhmvsgms ++n lqd s T230568_1 2090 MDNPIEVDVNNSAWVPGPTDDCCPAQPE-EGMMMNISIGYPYPPVCLGKAPGCLMPTTQNWLVEVPTVSATSRFTYHMVSGMS---QINNLQDPS 2180 9**************************7.6****************************************************9...79******* PP HERV-K_env_2 100 yqrslkfrpkgkpcpkeipkeskntevlvweecvansav 138 yqrsl+ rpkgk+cpkeipkesk evlv ecva++av T230568_1 2181 YQRSLQCRPKGKACPKEIPKESKSPEVLVCGECVADTAV 2219 ***********************************9987 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.1 5.6 2.6e-31 4.2e-28 6 87 .] 1994 2076 .. 1990 2076 .. 0.95 Alignments for each domain: == domain 1 score: 97.1 bits; conditional E-value: 2.6e-31 HERV-K_REC 6 thkmnkmvtseeqmklpstkkaepptw.aqlkkltqlatk.ylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t ++nkmv seeq klps k ae p aqlkkltqla k lentkvt tpe mllaalmivs vv+l+ +a+++aa+++y+a T230568_1 1994 TRQVNKMVISEEQKKLPSIKEAELP-I*AQLKKLTQLAKKkSLENTKVTPTPENMLLAALMIVSTVVSLPKSAGAAAANYTYWA 2076 7899*******************99.888*********7527*****************************************7 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.5 0.2 3e-30 4.9e-27 3 84 .] 194 274 .. 192 274 .. 0.97 Alignments for each domain: == domain 1 score: 93.5 bits; conditional E-value: 3e-30 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G++ s+++l++++qt+e++cPWFpe+Gtldl++W+k+gkelk qa ++g+ ipl+v++ w++i++ L+ T230568_1 194 ASYLSFIKILLRRGGVRASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELK-QANREGKIIPLTVWNDWAIIKATLE 274 679*****************************************************.**********************985 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.9 0.0 1.4e-18 2.3e-15 22 65 .. 1392 1435 .. 1391 1436 .. 0.97 Alignments for each domain: == domain 1 score: 55.9 bits; conditional E-value: 1.4e-18 HHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 22 gdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 gdINWi p+lgi+t+ +++LF+ LrGds+l+s+r+LT+eA++++ T230568_1 1392 GDINWIWPTLGIPTYAMSNLFSFLRGDSELNSERTLTPEATKEI 1435 9****************************************997 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 0.0 5.4e-13 8.8e-10 6 127 .. 891 1003 .. 886 1005 .. 0.80 Alignments for each domain: == domain 1 score: 38.2 bits; conditional E-value: 5.4e-13 EBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEE..E-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 6 ptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalil..pRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + r++++s Dl++++ + + p + + +p +++ +lp+g ++ +RS+l++kg+ +++gvi sdy+G ++ l+ ++ + + + gdRiAqL+ T230568_1 891 LSRATAGSTAVDLCSTQMVFLLPgKPPQKIPRGVYGPLPEG---RVGl*GRSSLNLKGVQIHTGVIYSDYKG--GIQLVISSTVPRSANPGDRIAQLL 983 66788888888999999999888778889999999999874...555489**********************..6666667888999*********** PP EEEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 101 fariltaeleevetlkatergeggfgs 127 + ++++ +++++ +ggfgs T230568_1 984 LLPYVK----IG---ENKKERTGGFGS 1003 **9999....33...345555666665 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 1.2 2.7e-09 4.4e-06 7 48 .. 1933 1973 .. 1929 1975 .. 0.91 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 2.7e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T230568_1 1933 WKDNKNKTWEM-GKVITWGRGFACVSPGENQLPVWIPTRHLK 1973 99999999984.79*************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 2.5 6.2e-09 1e-05 1 17 [. 776 792 .. 776 792 .. 0.96 2 ? -1.4 0.3 1.7 2.8e+03 2 7 .. 2373 2378 .. 2372 2378 .. 0.87 3 ? 1.2 4.2 0.26 4.2e+02 1 12 [. 2969 2980 .. 2969 2981 .. 0.89 Alignments for each domain: == domain 1 score: 25.3 bits; conditional E-value: 6.2e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG++GH++r Cp T230568_1 776 KKCYNCGQIGHLKRSCP 792 59**************9 PP == domain 2 score: -1.4 bits; conditional E-value: 1.7 CTSSSS CS zf-CCHC 2 kCynCG 7 C nCG T230568_1 2373 ICENCG 2378 6****9 PP == domain 3 score: 1.2 bits; conditional E-value: 0.26 SCTSSSSSSSST CS zf-CCHC 1 rkCynCGepGHi 12 ++C+ CG+ GH T230568_1 2969 KTCWFCGSGGHH 2980 58*********6 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.1 1.5e-06 0.0025 117 156 .. 1263 1303 .. 1258 1313 .. 0.78 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 1.5e-06 .......TEEEEESB--ST-TTHHHHHHH.HHHHHHTT-T. CS RVT_1 117 rvngeesegryekkglpqGsvlSPllfnl.fmnellrelrk 156 ++n++e+ +r+++k+lpqG+ +S ++++l ++n+l+ ++++ T230568_1 1263 SLNNKEPATRFQWKVLPQGMLNSSTICQLkLCNQLETSFQT 1303 568999**********************8456777766665 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.7 2.3 3.7e+03 163 190 .. 27 54 .. 23 57 .. 0.80 2 ! 16.4 0.0 3.6e-06 0.0058 2 53 .. 2456 2507 .. 2455 2530 .. 0.94 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.3 HHHHHHHHHHXXXXX........XXX.. CS GP41 163 lrvvlivllllPvlfkslakslqqvrae 190 + vv+iv++ +P +++s+ s + +a T230568_1 27 AIVVIIVIVSIPSFVQSIFMSTDSCQAL 54 56889999999*****999888877765 PP == domain 2 score: 16.4 bits; conditional E-value: 3.6e-06 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH...... CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGq 53 a ++l +vq+a+ vn+ +kn k + Q +id+kl +++n l + v+ +G+ T230568_1 2456 AGIALHSSVQTAEYVNDWQKNSSKLWNSQIQIDQKLANQINDLRQTVIWMGE 2507 5689********************************************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 532 (0.032626); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.62u 0.43s 00:00:02.05 Elapsed: 00:00:00.82 # Mc/sec: 11076.99 // Query: T230568_2 [L=3174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-24 86.9 0.0 2.2e-24 85.8 0.0 1.5 1 rve Integrase core domain 3.6e-19 68.0 7.6 8.4e-19 66.9 7.6 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 1e-14 54.0 2.7 2.4e-14 52.9 2.7 1.7 1 Integrase_Zn Integrase Zinc binding domain 3.6e-08 33.6 0.0 6.4e-08 32.8 0.0 1.3 1 RNase_H RNase H 2.1e-05 24.3 1.4 3.8e-05 23.5 1.4 1.3 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.035 14.2 0.0 0.055 13.6 0.0 1.3 1 DDE_Tnp_IS240 DDE domain 0.036 13.4 0.1 0.066 12.6 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.8 0.0 9.5e-28 2.2e-24 4 118 .. 1765 1874 .. 1763 1875 .. 0.95 Alignments for each domain: == domain 1 score: 85.8 bits; conditional E-value: 9.5e-28 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dv++++++++ ++++v +d++s++i+a + + e ++s+v + l + g pe+v +Dng+ y+ska+++fl++++i+++ ++ T230568_2 1765 PNVLWQMDVMHVPSFGKL--SFVHVTVDTYSHFIWATCQTGE-STSHVKRHLLSCFPVMGV--PEKVKTDNGPGYCSKAVQKFLNQWKITHTIGILYN 1857 999**********66555..**********************.9999*9999988888888..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q ++++Er+nrtlk++ T230568_2 1858 SQGQAIIERTNRTLKAQ 1874 ***************86 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.9 7.6 3.6e-22 8.4e-19 1 36 [] 811 846 .. 811 846 .. 0.97 Alignments for each domain: == domain 1 score: 66.9 bits; conditional E-value: 3.6e-22 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 p+glCp+C+k kHwa++Chskfdk+G+pLs+n++r+ T230568_2 811 PSGLCPKCGKAKHWANQCHSKFDKDGQPLSGNRKRG 846 79*******************************996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.9 2.7 1e-17 2.4e-14 1 37 [. 1711 1747 .. 1711 1748 .. 0.99 Alignments for each domain: == domain 1 score: 52.9 bits; conditional E-value: 1e-17 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+e+H+l+H+Na +L++kF it++q ++IVq+C +Cq T230568_2 1711 AQELHALTHVNAIGLKNKFDITWKQTKNIVQHCTQCQ 1747 9***********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.0 2.8e-11 6.4e-08 60 141 .. 1627 1707 .. 1620 1709 .. 0.84 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 2.8e-11 SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 60 sdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++++ni++DS Yvv+ +t++++r+ + + + + p+ n l++ + ++ ++++h+++H++ +k Ne+aD l+++a T230568_2 1627 FNQSINIVSDSAYVVQ-ATKDIERALIKYIMDDQLN-PLFN-LLQQNV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 1707 5789************.9999999977777666666.8999.777777..456888***********98888789*******9986 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 1.4 1.6e-08 3.8e-05 34 119 .. 2488 2571 .. 2474 2583 .. 0.79 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 1.6e-08 HHHHHHHHHSSCHH...........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHH CS GP41 34 dkklearvnaleevvlalG.qevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnq 119 +k+ + ++ +l++ ++G + ++sl+ +lrC n CvT+ yn+se W+ v+ hl+g n + ++++ d+++q T230568_2 2488 IKNWQTKLMILDKL--SFGwERLMSLEYLFQLRCDWNTSDFCVTPQAYNESEhHWDMVRCHLQGGEDNLTLV--YRCIQQLQRDSNQQ 2571 57889999999998..77746799***************************************975554444..44455555555555 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.4e-05 0.055 4 115 .. 1769 1880 .. 1766 1887 .. 0.91 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.4e-05 DDE_Tnp_IS240 4 wrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkyln 96 w++D v Gk +++ vD + + + + t +k+ l ++ + pe++ tD + y +a++++ ++ + ++ + + + T230568_2 1769 WQMDVMHVPSFGKLSFVHVTVDTYSHFIWATCQTGESTSHVKRHLLSCFPVM-GVPEKVKTDNGPGYcSKAVQKFLNQWKITHTIGILYNSQGQ 1861 888888888899****************************************.*********99999457*******99999******99999* PP DDE_Tnp_IS240 97 nriEsdhrtlKkrlrptrg 115 +iE+ +rtlK++l ++++ T230568_2 1862 AIIERTNRTLKAQLVKQKK 1880 ************9977665 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 2.8e-05 0.066 71 98 .. 1235 1262 .. 1230 1263 .. 0.94 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 2.8e-05 EEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvp 98 l+ +Dlk++F+++pl++++ +++af++p T230568_2 1235 LIIIDLKDCFFTIPLAKQDFEKFAFTTP 1262 678***********************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.83 # Mc/sec: 10940.09 // Query: T230568_3 [L=3174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-08 31.5 0.4 1.8e-07 30.6 0.4 1.4 1 RVT_thumb Reverse transcriptase thumb domain 2.4e-05 23.8 0.0 3.3e-05 23.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.018 15.0 0.4 0.03 14.2 0.4 1.2 1 Borrelia_orfX Orf-X protein 0.16 12.2 0.1 1.5 9.0 0.1 2.1 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.4 4.5e-11 1.8e-07 1 27 [. 1364 1390 .. 1364 1393 .. 0.94 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 4.5e-11 ES-B----SSSEBHHHHHHHHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWi 27 pqk+++r+d+lk LN+fQkLlgd NWi T230568_3 1364 PQKIEIRKDTLKALNEFQKLLGDTNWI 1390 6*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 8e-09 3.3e-05 143 222 .] 1285 1357 .. 1285 1357 .. 0.95 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 8e-09 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 fn + ++l+++r +++++++++Y+D il++++++++l ++ +++ ++++gl+i +K++ ++++yLG+++ T230568_3 1285 FNYLSAQALQPVRDKFSDCYIVHYVD-ILCAAETRDKLIDRYTFLQTEVANAGLTITSDKIQTS------TPFRYLGMQV 1357 677778999****************5.*************************************......8******985 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.4 7.3e-06 0.03 52 127 .. 1761 1836 .. 1755 1841 .. 0.84 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 7.3e-06 Borrelia_orfX 52 evyalitsgkqmlltflnldvlnmfm.flltlfpifswplftlenqhvtvfniycfvfllqeslkplkqimdlvila 127 evy+l+ gk m t+l l+ + m l+ + + + e+ + +iy++vfl e++k lkq m +v + T230568_3 1761 EVYVLMCYGKWMSCTYLHLENCHLSM*QLILIHISYG-QPARQEKVLPMLKDIYYLVFLSWEFQKKLKQTMGQVTVV 1836 9******************988888887765554454.5567788888999********************988665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.0042 17 12 29 .. 1028 1045 .. 1025 1047 .. 0.91 2 ? 9.0 0.1 0.00036 1.5 42 81 .. 1039 1078 .. 1036 1089 .. 0.89 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0042 TTEEEEEEE-TTBSSEEE CS RVP 12 ggkyieallDtGAdatvi 29 +gk +e+l+Dt Ad++vi T230568_3 1028 SGKEFEGLVDTQADVSVI 1045 6899*************9 PP == domain 2 score: 9.0 bits; conditional E-value: 0.00036 EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEEST CS RVP 42 kaesllqGiggatetkqskaievllieekfrgevsplilp 81 +a++++ Gig+a+e++qs +i+++ + ++++++v+p+i++ T230568_3 1039 QADVSVIGIGTASEVYQSAMILHCPGSDNQESTVQPVITS 1078 78899*********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.71 # Mc/sec: 12789.12 // Query: T317700_1 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1168 (0.0716301); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 1172.54 // Query: T317700_2 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1744 (0.106954); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 213 (0.0130627); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 1224.27 // Query: T317700_3 [L=290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.55 # Mc/sec: 1508.44 // Query: T280054_1 [L=758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 3336.17 // Query: T280054_2 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 3093.78 // Query: T280054_3 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 3138.62 // Query: T090261_1 [L=3808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.71 # Mc/sec: 15343.72 // Query: T090261_2 [L=3808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.98 # Mc/sec: 11116.37 // Query: T090261_3 [L=3808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 14721.68 // Query: T211308_1 [L=3157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.74 # Mc/sec: 12204.92 // Query: T211308_2 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.75 # Mc/sec: 12038.37 // Query: T211308_3 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.41s 00:00:01.79 Elapsed: 00:00:00.77 # Mc/sec: 11725.69 // Query: T247246_1 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-25 88.4 0.1 5.7e-25 88.0 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.0 0.1 3.5e-29 5.7e-25 87 222 .] 768 929 .. 765 929 .. 0.94 Alignments for each domain: == domain 1 score: 88.0 bits; conditional E-value: 3.5e-29 GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSH CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsksk 177 + l++l++++++ + +++i++++ ++++++ +ng++ e + k+g++qG+ lSPllfn++++ l r +r++ ++v+l ++aDD++++ +++ T247246_1 768 FMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFRLKTGTRQGCRLSPLLFNIVLDFLARAIRQEKeikgihlgkEEVKLPLFADDMIVYLENP 867 56899******************************99*********************************99***************************8 PP HH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 ee.lqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 +q+ l+ + ++ k sg+kin +K++++l+ + s+++kyLG++l T247246_1 868 VVsAQNFLKLIGTFSKVSGYKINVQKSQAFLYtnnrqtesqimsEHpftiASKRIKYLGIQL 929 777***************************99999988877775116678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 6203.91 // Query: T247246_2 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-11 43.5 0.7 3.6e-11 42.9 0.7 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.7 2.2e-15 3.6e-11 1 84 [. 673 765 .. 673 768 .. 0.89 Alignments for each domain: == domain 1 score: 42.9 bits; conditional E-value: 2.2e-15 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvp 84 ipK+g ++++Rpisl ++d k+lnk++a + +++ekl++++q +f pg + + ++ + ++++++ k k+++++++D +kaFd+++ T247246_2 673 IPKPGrgttkKENFRPISLKNIDAKILNKILAn*iQ---QHIEKLIHHDQENFIPGMQGWFNIhksiNIIQHINRTKDKNHMIISIDAEKAFDKIQ 765 899999999999******************964434...788889***********999999999988999998899999***************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 852 (0.0522507); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.63 # Mc/sec: 6888.70 // Query: T247246_3 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-07 29.5 0.5 7.8e-07 28.4 0.5 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.5 4.8e-11 7.8e-07 1 19 [] 1396 1414 .. 1396 1414 .. 0.98 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 4.8e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+ ILS+ sQ T247246_3 1396 SFVGTWMKLETLILSKLSQ 1414 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 624 (0.0382681); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.66 # Mc/sec: 6575.57 // Query: T221041_1 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 10600.13 // Query: T221041_2 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 8752.48 // Query: T221041_3 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 8881.19 // Query: T018784_1 [L=1464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 6443.47 // Query: T018784_2 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.74 # Mc/sec: 5655.94 // Query: T018784_3 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.072 13.5 2.9 3.2 8.2 0.1 2.9 2 Ytca Uncharacterised protein family Domain annotation for each model (and alignments): >> Ytca Uncharacterised protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.7 0.0042 68 11 20 .. 209 218 .. 204 221 .. 0.85 2 ? 8.2 0.1 0.0002 3.2 11 22 .. 469 480 .. 467 498 .. 0.89 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.0042 Ytca 11 FPaWllClai 20 FP+W++Cl T018784_3 209 FPSWAFCLPW 218 *******965 PP == domain 2 score: 8.2 bits; conditional E-value: 0.0002 Ytca 11 FPaWllClaiai 22 FP+W++Cl+++i T018784_3 469 FPSWAFCLLLGI 480 *********997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 6861.30 // Query: T173650_1 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 5956.50 // Query: T173650_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 6235.72 // Query: T173650_3 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.74 # Mc/sec: 5393.05 // Query: T138218_1 [L=7969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.60u 0.44s 00:00:03.04 Elapsed: 00:00:00.99 # Mc/sec: 23028.24 // Query: T138218_2 [L=7969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.42s 00:00:02.92 Elapsed: 00:00:00.82 # Mc/sec: 27802.38 // Query: T138218_3 [L=7968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.10u 0.48s 00:00:03.58 Elapsed: 00:00:01.07 # Mc/sec: 21303.83 // Query: T303076_1 [L=2090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 8304.35 // Query: T303076_2 [L=2090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.84 # Mc/sec: 7118.02 // Query: T303076_3 [L=2089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.70 # Mc/sec: 8537.53 // Query: T090304_1 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 3593.67 // Query: T090304_2 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 4099.03 // Query: T090304_3 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.66 # Mc/sec: 3974.82 // Query: T225913_1 [L=1562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.67 # Mc/sec: 6669.58 // Query: T225913_2 [L=1562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 6476.26 // Query: T225913_3 [L=1561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.70 # Mc/sec: 6379.65 // Query: T366638_1 [L=5902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.38s 00:00:02.14 Elapsed: 00:00:00.82 # Mc/sec: 20591.00 // Query: T366638_2 [L=5902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:00.82 # Mc/sec: 20591.00 // Query: T366638_3 [L=5902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.39s 00:00:02.33 Elapsed: 00:00:00.88 # Mc/sec: 19187.07 // Query: T137396_1 [L=1922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 7744.39 // Query: T137396_2 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.73 # Mc/sec: 7528.29 // Query: T137396_3 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 8454.85 // Query: T259007_1 [L=2845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.3 6.7 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00063 10 6 41 .. 1904 1939 .. 1890 1950 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00063 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T259007_1 1904 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1939 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 10709.29 // Query: T259007_2 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.74 # Mc/sec: 10994.87 // Query: T259007_3 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.80 # Mc/sec: 10170.25 // Query: T362183_1 [L=1304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.73 # Mc/sec: 5110.30 // Query: T362183_2 [L=1304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 5652.31 // Query: T362183_3 [L=1303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 6110.92 // Query: T272764_1 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 2803.61 // Query: T272764_2 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.68 # Mc/sec: 2267.63 // Query: T272764_3 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.2 0.1 0.0042 16.6 0.1 1.8 1 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.1 2.6e-07 0.0042 4 20 .. 228 244 .. 228 245 .. 0.91 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 2.6e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272764_3 228 VTVMQAHVRGWLERKRL 244 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.67 # Mc/sec: 2301.47 // Query: T334764_1 [L=1565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.41s 00:00:01.51 Elapsed: 00:00:00.76 # Mc/sec: 5891.05 // Query: T334764_2 [L=1564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 698 (0.0428063); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 6391.91 // Query: T334764_3 [L=1564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 773 (0.0474059); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 5887.29 // Query: T164980_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.66 # Mc/sec: 2960.53 // Query: T164980_2 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.76 # Mc/sec: 2570.98 // Query: T164980_3 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.7 4.7 7.2 8.5 4.4 7.2 1.1 1 DUF2070 Predicted membrane protein (DUF2070) Domain annotation for each model (and alignments): >> DUF2070 Predicted membrane protein (DUF2070) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 7.2 0.00052 8.5 86 167 .. 249 320 .. 213 374 .. 0.57 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.00052 DUF2070 86 sllaillsallqalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifala 167 ++l+ +ls +++++l + l+++f+l++l l + sl+ ++ p+l + ++ l +++fl ++l+ l+f ++ T164980_3 249 FFLSFFLS----FFLSFFLSFFLSFSFFLSFLSLSLSLPPSLPPSLPPSLSLLSSLSSL------SSFFLSFFLSFLFFHVV 320 11111111....12222223333344444444444444444444443333222222222......22233333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3006.07 // Query: T159474_1 [L=2442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 9839.64 // Query: T159474_2 [L=2442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.78 # Mc/sec: 8956.60 // Query: T159474_3 [L=2441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.86 # Mc/sec: 8120.10 // Query: T258764_1 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 3406.99 // Query: T258764_2 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 2974.36 // Query: T258764_3 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.71 # Mc/sec: 2639.22 // Query: T149829_1 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 6896.80 // Query: T149829_2 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 6690.93 // Query: T149829_3 [L=1566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 7000.09 // Query: T246245_1 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.73 # Mc/sec: 4044.35 // Query: T246245_2 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.5 7.8 5.5 5.5 6.7 5.5 1.5 1 CCDC24 Coiled-coil domain-containing protein 24 family Domain annotation for each model (and alignments): >> CCDC24 Coiled-coil domain-containing protein 24 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 5.5 0.00034 5.5 88 138 .. 687 743 .. 666 757 .. 0.49 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00034 CCDC24 88 rsrrvldYvl...daaaersareespssrPesassks...taasaasgsssasalss 138 ++++ +d++ ++++++++ +s ss+++s+s +s +asa+s+sss+s++ss T246245_2 687 QQPQAIDWLFyvkKNNSQPQSLLPSTSSSTSSSSTTSsssSVASASSDSSSSSSSSS 743 555555555533344455544444444444444444433333444444443333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1036 (0.0635349); expected 326.1 (0.02) Passed bias filter: 389 (0.0238562); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:00.76 # Mc/sec: 3884.71 // Query: T246245_3 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 4402.26 // Query: T375364_1 [L=1928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 47.4 0.0 2.2e-12 46.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.8 0.0 1.4e-16 2.2e-12 124 222 .] 275 368 .. 270 368 .. 0.96 Alignments for each domain: == domain 1 score: 46.8 bits; conditional E-value: 1.4e-16 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +++y+++ lpqG+++S ++f ++ + ++++ + g++ll+Y+DD+l+ +++ + + ++a+ +l+++g+k++++K +++ +++v yLG+t+ T375364_1 275 TTQYTWTQLPQGFKNSRIIFREALARDIQKFPAKDLGCVLLQYVDDLLLGHSTAVGCAKGMDALLWHLEDCGYKVSKKKAQIC-----RQQVCYLGFTI 368 6789********************99999999988************************************************.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 8232.36 // Query: T375364_2 [L=1927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-06 28.2 0.0 2.9e-06 27.4 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 1.8e-10 2.9e-06 5 57 .. 615 669 .. 612 711 .. 0.88 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 1.8e-10 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.T CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.a 57 +Y+DGs++ n +ge++ g+ v+ + + ++pl++ +++++aEL A++ aL+ + T375364_2 615 ELYVDGSSFINpQGERCPGYaVVTLD-NVIEAKPLPQGTSAQKAELVALTRALElS 669 68*********889999999666656.457779999*****************954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.70 # Mc/sec: 7875.46 // Query: T375364_3 [L=1927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.73 # Mc/sec: 7551.81 // Query: T316412_1 [L=4905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.42s 00:00:01.93 Elapsed: 00:00:00.82 # Mc/sec: 17112.65 // Query: T316412_2 [L=4904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:00.82 # Mc/sec: 17109.16 // Query: T316412_3 [L=4904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.40s 00:00:01.81 Elapsed: 00:00:00.67 # Mc/sec: 20939.57 // Query: T172827_1 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 2538.99 // Query: T172827_2 [L=567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.06 13.3 0.6 0.11 12.4 0.6 1.3 1 PAN_2 PAN-like domain Domain annotation for each model (and alignments): >> PAN_2 PAN-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.6 6.7e-06 0.11 30 53 .. 123 146 .. 108 158 .. 0.81 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.7e-06 PAN_2 30 leeCaeeClsnCsCtAYayadlsg 53 +C++ C + C C +Y +++l++ T172827_2 123 HGDCNSICFHSCKCHSYKQEQLKQ 146 568**************9988764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.63 # Mc/sec: 2574.75 // Query: T172827_3 [L=567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.002 16.1 10.7 0.0078 14.1 1.7 2.0 2 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein Domain annotation for each model (and alignments): >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 1.7 4.8e-07 0.0078 501 594 .. 324 417 .. 317 423 .. 0.91 2 ! 7.0 4.4 6.9e-05 1.1 499 566 .. 413 480 .. 396 508 .. 0.76 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 4.8e-07 Herpes_BLLF1 501 skapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatspt 594 s p + sp ++ p p sp p++ p p sp l p ++ +p p p++ +p p p p + +p p sp T172827_3 324 SPLPSLQSPLPSLQHPFPSLQSPLPSLQHPFPSLQSPLLSLQRPFPSLQSPLPSLQCSVPSLQSPLPSLQFPFTSLQLPLRPLQSPLPCLQSPF 417 6679999*************************************************************99999999999999999888888875 PP == domain 2 score: 7.0 bits; conditional E-value: 6.9e-05 Herpes_BLLF1 499 teskapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttpt 566 +s p + sp ++ p p sp p++ p p sp sp s + p+ sp p++ +p T172827_3 413 LQSPFPSLQSPFPSLQIPLPSLQSPFPSLQRPFPSLQSPLPSLRSPLSLPSEPSSSLQSPLPSLRSPL 480 46777888899999999999999999999999999999988889999999999999999988887775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2845.77 // Query: T368358_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 791 (0.0485098); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 6061.15 // Query: T368358_2 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.66 # Mc/sec: 6887.66 // Query: T368358_3 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 786 (0.0482031); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 6061.15 // Query: T172322_1 [L=1769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.67 # Mc/sec: 7553.45 // Query: T172322_2 [L=1769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 24.3 0.0 4.4e-05 23.6 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 2.7e-09 4.4e-05 5 56 .. 512 564 .. 509 587 .. 0.85 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 2.7e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + T172322_2 512 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASE 564 68*******99999******766766.557778999**************9965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 7553.45 // Query: T172322_3 [L=1768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.86 # Mc/sec: 5881.33 // Query: T148453_1 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 7022.04 // Query: T148453_2 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 7130.07 // Query: T148453_3 [L=1619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.76 # Mc/sec: 6094.32 // Query: T368846_1 [L=1071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 4713.77 // Query: T368846_2 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 5018.18 // Query: T368846_3 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-05 25.0 0.0 2.8e-05 24.2 0.0 1.3 1 Lipocalin Lipocalin / cytosolic fatty-acid binding protein f Domain annotation for each model (and alignments): >> Lipocalin Lipocalin / cytosolic fatty-acid binding protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 1.7e-09 2.8e-05 2 116 .. 118 228 .. 117 251 .. 0.81 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 1.7e-09 EEEEEEEEEESSGGHHCCCHTTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEEEESSTTEEEEEEEESTTEEEEEEEEEESSSEEEEEEEEECTTE CS Lipocalin 2 GkWyliasandnsefeeeekklrvyiaeikpteegnlevteiekdggkceeesitakkteepgklgvefdeyldgrkvkvlttdydnylilylkkdkegk 101 G+W + +a++ ++ + +lr+ ++i ++g++ ++ + k g c+e++it++ t+ +g++ f +++ +v ++tdy + lily+ + +++ T368846_3 118 GRWLTLQLAANHADLVSPADPLRLALHSIRTRDGGDVDFVLFWKGEGVCKETNITVHPTQLQGQYQGSF--EGGSMHVCFVSTDY-SNLILYVRFE-DDE 213 9*****************************55*******999888889********************7..5556699999****.7778887777.334 PP .EEEEEEEEESSSSEE CS Lipocalin 102 .ttlvaellsrdpels 116 t+l + l +r + T368846_3 214 iTNLWVLL-ARRMLED 228 34444444.7764444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 4937.24 // Query: T028901_1 [L=984] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (984 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 4853.55 // Query: T028901_2 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0001 22.4 1.5 0.00022 21.3 1.5 1.5 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 1.5 1.4e-08 0.00022 11 40 .. 876 905 .. 872 914 .. 0.89 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 1.4e-08 Mit_proteolip 11 iplkpyYtqvYqeIwvemglmgfivykirs 40 i l p+Y+++Y++I++ +++ ++ +i++ T028901_2 876 IKLSPHYIYIYIYIYIHTHTHTHTHTHIHT 905 789*******************99988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 4610.16 // Query: T028901_3 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 4933.68 // Query: T338693_1 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-07 29.9 0.4 5.8e-07 28.6 0.4 1.7 1 IN_DBD_C Integrase DNA binding domain 2.7e-05 24.2 0.0 6e-05 23.1 0.0 1.5 1 RVP Retroviral aspartyl protease 0.00067 19.7 0.0 0.0016 18.5 0.0 1.6 1 rve Integrase core domain 0.0034 17.1 8.4 0.0034 17.1 8.4 2.7 3 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.011 15.6 0.6 0.031 14.2 0.6 1.7 1 Borrelia_orfX Orf-X protein Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.4 1.8e-10 5.8e-07 4 43 .. 1684 1721 .. 1682 1722 .. 0.95 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 1.8e-10 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvP 43 v wkd++s+ +GP+ +L++grG++c s + w+P T338693_1 1684 AVLWKDVNSNVCCGPNDLLMWGRGYACA--HTPSGPLWIP 1721 699*************************..999******9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.0 1.9e-08 6e-05 9 96 .. 236 320 .. 231 322 .. 0.80 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 1.9e-08 EEETTE..EEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCC CS RVP 9 vkiggk..yieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqkl 96 v ++g+ i l+DtGA++ ++ + P + a +++ Gi g+ + ++ ++++ ++++ s+l++p +pv+llG ++++ T338693_1 236 VTLTGEgkSIPCLIDTGATHLSLPSFQGPVS----FAPTTVVGIDGQAPKPLKTP-SLWCQLRQHSFMYSFLVIPICPVPLLGMKHINQI 320 44443344999********************....99**********96555555.4555556666667**************9988886 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 5e-07 0.0016 4 92 .. 1025 1109 .. 1022 1109 .. 0.82 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 5e-07 rve 4 pgelwqvDvtvgr.ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgi 92 p + wq+ +t+++ + + +yllv++ +f++++ ++++ +e +a +vi l + ++g p + sDn +++++ ++++ + lgi T338693_1 1025 PAQDWQINFTHMP*VRKL---KYLLVWVGTFTGWVQVFPTESE-KATVVISSLLSDIIPQFGL-PTSIQSDNRLAFINQVTQAVSQALGI 1109 677788888877666544...5*********************.7777777777777777777.***************99999998887 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 0.2 3 9.9e+03 135 180 .. 1122 1171 .. 1119 1188 .. 0.49 2 ? -1.7 0.9 0.62 2e+03 145 191 .. 1272 1308 .. 1259 1314 .. 0.75 3 ! 17.1 8.4 1e-06 0.0034 1 161 [. 2178 2338 .. 2178 2345 .. 0.81 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 3 .HHHHHGCHHHHHHHHHHHH...HHHHHHCHHHHHHHHHHH.XXXXX... CS GP41 135 qslannfkslnWvsyikltv...liiavgvalrvvlivlll.lPvlfksl 180 +sl ++++ l+W s l +++ + ++l+ lll +P l++sl T338693_1 1122 RSLLKWIEDLHWQSSPILQKvysNTFTLMNSYSLLLYSLLLsFPFLYHSL 1171 47888999999987532221000222222333344444433146666665 PP == domain 2 score: -1.7 bits; conditional E-value: 0.62 HHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX... CS GP41 145 nWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraev 191 +W+s ++ + + + + +lll P++f +l+ ++ q + + T338693_1 1272 DWIS-------LVLSILSPSIPVFLLLLGPCVF-CLVCQFIQSH--I 1308 4544.......788888888999999999****.9999888877..3 PP == domain 3 score: 17.1 bits; conditional E-value: 1e-06 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHH..HHE..CCSHHHCXXXXXXX..X....X..HHHH CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlk..lrChanykliCvTkvpynases....Wervkkh 92 va +s++ +vq+at+v++l knv + l Q+ id k a + l+ + +G+ +l ++++ ++k iCvT + e + T338693_1 2178 VAVASITESVQTATFVDNLAKNVSNQLLLQQGIDEKTLACLRTLDAASEYVGEWQDALAFRQQ*nWDW--EHKHICVTLESID---V*lg*GETTPRG 2270 5789*******************************************999***9999*9999665667..99******99883...222333678889 PP HHHHHHXHHHHHHHHHHHHHHH..HHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHC CS GP41 93 legiWnntevsldlsklhneie..diqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgv 161 ++ + + ++s +k+ ++++ d + qq + q +++ ++ ++ ++l+W + ++ ++++ + T338693_1 2271 ILHDNFRADISQLKTKILQSLNaiDLHAQQTAIWQDVQEHLSWI-DSHSWGSLLDWKRMLQIILMFV--LC 2338 99999999**9999999999983355677777888888877887.5678999999999755555544..33 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.6 9.6e-06 0.031 56 80 .. 1525 1549 .. 1521 1573 .. 0.89 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 9.6e-06 Borrelia_orfX 56 litsgkqmlltflnldvlnmfmfll 80 li gkqml t lnl+ lnm+m+ l T338693_1 1525 LISYGKQMLHTSLNLKNLNMYMYPL 1549 899*******************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 263 (0.016129); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.65 # Mc/sec: 11804.22 // Query: T338693_2 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 24.0 0.0 3.4e-05 23.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 0.014 15.3 3.8 0.046 13.7 3.8 1.9 1 zf-CCHC Zinc knuckle 0.038 13.6 5.7 0.1 12.2 5.7 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 0.0 6.2e-09 3.4e-05 38 220 .. 449 593 .. 410 595 .. 0.69 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 6.2e-09 -------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST- CS RVT_1 38 lsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGs 136 +++ p+ + l++ +++ ++++ lDlk+aF+++pl+ +++l+af+ ++ + ++ ++ ++++lpq + T338693_2 449 IHPTVPNPYTL-------------LSSLPSStTHYSILDLKDAFFTIPLHPSSQPLFAFTWTDP------------------DTHQ-PQQLTWAVLPQAF 516 33333333333.............333444449****************************988..................3344.78899******** PP TTHHHHHHHHHHHHHTT-T......TEEECTTEEEE...EESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 137 vlSPllfnlfmnellrelrkrakgvtllrYaDDili...lsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 SP f+ ++ l ++r +l+ Y D +l+ ++ks +++ + ++l + g++++p K ++ s++++yL + T338693_2 517 RDSPHYFSQALPCDLLSFRPS--ASHLIEYFDNLLL*npSYKSsQQDTLL----LLQHLFSKGYHVSPIKAQIS-----STSITYLSI 593 *******99987666666664..589999999998876533331333333....34444456888888888888.....788888866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 3.8 8.4e-06 0.046 2 16 .. 147 161 .. 146 162 .. 0.90 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 8.4e-06 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +C++C++pGH+a+ C T338693_2 147 PCFRCQKPGHWASGC 161 7***********866 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 5.7 1.9e-05 0.1 2 20 .. 145 163 .. 144 164 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.9e-05 --B-TTT-SSBS-TTT--- CS zf-CCHC_5 2 pglCpRCkkgkHwardChs 20 g C RC k Hwa+ Chs T338693_2 145 RGPCFRCQKPGHWASGCHS 163 688***************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.75 # Mc/sec: 10230.33 // Query: T338693_3 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-23 81.0 0.0 1.2e-22 80.2 0.0 1.4 1 rve Integrase core domain 3.8e-09 36.8 0.0 6.5e-09 36.0 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.012 15.7 0.0 0.019 15.1 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 0.0 2.3e-26 1.2e-22 3 118 .. 1523 1633 .. 1521 1634 .. 0.94 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 2.3e-26 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + ++ +y++v id+ s+li ++a++ e +++ vi+ l a+ + p ++ +Dng +y+s+ f++f+ ++i++ + p+ T338693_3 1523 EPNQLWQTDVTHVPEF--EKLKYVHVSIDTNSHLISTHALPGE-STQYVIKHLPLTSAFMRQ--PTKIKTDNGLAYASSLFQQFCHMWNIQHFTGIPY 1615 7*************55..556**********************.**********77777777..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 +pq +++vE + tlk++ T338693_3 1616 NPQRQAIVEHVHSTLKNR 1633 ****************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 1.2e-12 6.5e-09 3 85 .. 766 854 .. 764 895 .. 0.74 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 1.2e-12 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.........H CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.........k 85 +++++ DGs+ + +++++ag+ ++++ s++l++++t ++a L+A ++aL a ++ +vni tDSkY+++ +++ w T338693_3 766 DHTWFIDGSSTRPncHSPAKAGYaIVSS-----TSTALPHPTTSQQAKLIASTQALTlA--KGLRVNIHTDSKYAFHILHHRAIIWaerfphyvrV 854 579******9876578888****55553.....58999999***************977..99**************5554444445555555550 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 3.5e-06 0.019 3 115 .. 1527 1639 .. 1525 1651 .. 0.82 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 3.5e-06 DDE_Tnp_IS240 3 swrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasayasalkelkregelfdevshvq....v 92 w+ D T v +k +Y+ +D ++ ++ + t+ +++ l + ++p +i tD ayas l ++++ +++++h + T338693_3 1527 LWQTDVTHVPEFEKLKYVHVSIDTNSHLISTHALPGESTQYVIKHLPLTSAFM-RQPTKIKTDNGLAYASSL---FQQFCHMWNIQHFTgipyN 1616 5999999999999*********************9999999999987776666.99************9864...5555557777777622224 PP DDE_Tnp_IS240 93 kylnnriEsdhrtlKkrlrptrg 115 + ++ ++E+ h+tlK+rl+ ++g T338693_3 1617 PQRQAIVEHVHSTLKNRLENKKG 1639 5677889**********988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.72 # Mc/sec: 10656.59 // Query: T381765_1 [L=207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-06 28.1 0.1 3.3e-06 27.7 0.1 1.1 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 0.1 2e-10 3.3e-06 34 99 .. 87 151 .. 72 160 .. 0.90 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 2e-10 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381765_1 87 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 151 579***********************************************99987.7777777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1003.71 // Query: T381765_2 [L=206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.59 # Mc/sec: 998.87 // Query: T381765_3 [L=206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 82 (0.00502882); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 1178.66 // Query: T228736_1 [L=5371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.80 # Mc/sec: 19206.90 // Query: T228736_2 [L=5370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 23.2 0.0 2.1e-05 23.2 0.0 1.4 2 AMP-binding AMP-binding enzyme Domain annotation for each model (and alignments): >> AMP-binding AMP-binding enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 1.3e-09 2.1e-05 380 421 .. 57 96 .. 53 98 .. 0.93 2 ? -4.9 1.1 0.42 6.9e+03 204 233 .. 3785 3814 .. 3765 3824 .. 0.85 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.3e-09 T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEESSSEEE CS AMP-binding 380 nkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421 ++pe tae+ + g+ TGD +++de+Gy++++gR+ d+i+ T228736_2 57 GNPENTAEVEC--GDVCDTGDRATVDEEGYIWFLGRSHDTIN 96 69******988..68*************************97 PP == domain 2 score: -4.9 bits; conditional E-value: 0.42 EEEESS-TTSCHHHHHHHHHHHHHT-EEEE CS AMP-binding 204 vvlsilplahifglilelllallsGatvvl 233 v++ lp+ +i+ +i++++l++ G+++ + T228736_2 3785 VFIFNLPVGFIYLFIYFIFLFFQLGHCLLF 3814 456679********************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.83u 0.43s 00:00:02.26 Elapsed: 00:00:00.78 # Mc/sec: 19695.71 // Query: T228736_3 [L=5370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.44s 00:00:02.26 Elapsed: 00:00:00.84 # Mc/sec: 18288.88 // Query: T352863_1 [L=4153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.8 8.0 8.2 8.7 6.9 8.2 1.5 1 ARF7EP_C ARF7 effector protein C-terminus Domain annotation for each model (and alignments): >> ARF7EP_C ARF7 effector protein C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 8.2 0.00053 8.7 20 89 .. 1786 1857 .. 1768 1868 .. 0.69 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00053 ARF7EP_C 20 epeks.erekrklarkakkkkekks..ekkksklydekGkllsngkdlCDCleeeCkGCfypCkkCksrkCga 89 ++++ + +k++++++ ++++ ++ + ++ ++ ++G++++++ d+C C +++C y C++ ++ C++ T352863_1 1786 RAQTYaHTHKHAYTQTYTRRHMDTHtgTYVHRDTHGHTGTHRHHNADICTCARNTCMH-TYTCSHTYAHTCTH 1857 4444435566666666654443333002334477888889999999**********96.699*9999999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.53u 0.41s 00:00:01.94 Elapsed: 00:00:00.80 # Mc/sec: 14851.28 // Query: T352863_2 [L=4153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.41s 00:00:02.06 Elapsed: 00:00:00.80 # Mc/sec: 14851.28 // Query: T352863_3 [L=4153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.42s 00:00:01.92 Elapsed: 00:00:00.78 # Mc/sec: 15232.09 // Query: T184406_1 [L=402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.66 # Mc/sec: 1742.51 // Query: T184406_2 [L=402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 2091.01 // Query: T184406_3 [L=402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2017.64 // Query: T081232_1 [L=3698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.32s 00:00:01.62 Elapsed: 00:00:00.67 # Mc/sec: 15790.07 // Query: T081232_2 [L=3698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-54 183.4 2.6 5.2e-54 183.4 2.6 1.8 2 Transposase_22 L1 transposable element 0.00033 20.4 0.0 0.0006 19.5 0.0 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 183.4 2.6 6.3e-58 5.2e-54 166 353 .. 994 1180 .. 991 1194 .. 0.93 2 ? -1.0 0.4 0.069 5.7e+02 303 359 .. 1981 2045 .. 1977 2051 .. 0.63 Alignments for each domain: == domain 1 score: 183.4 bits; conditional E-value: 6.3e-58 HHHHHHHHHHHHHHHHHH.HHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEES CS Transposase_22 166 vkerekrkkileqslqvi.qdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrtt 256 k ++kr+++ +qslq++ + + Pnl +iG++e+e e+ k len++ iie nfP l+++++++iqe++ tP ++ kr+ +r i++r++ T081232_2 994 MKTKKKRIRKYKQSLQEV*D-Y-FK*PNLVVIGIPEQE-ENSKSLENTFGRIIEGNFPSLARDLDIQIQEAQTTPGKFIAKRSLPRCIVIRLS 1083 57888999999999998554.3.389**********87.789*************************************************** PP SHHHHHHHHHHHHHHS-.EEETTEEEEEEE---HHHHHHHHHHHHHHHHHH.HTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 257 kvlnkdkilkavrekGr.vtlkGkPirltadlsaetlkarrewtdviqilk.ekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal 347 kv++k++il+avr+k + vt+kGkPirltad+s etl+arr+w++++ +lk + ++q r+lyP kls i +G i+ f dk++lr++ +P l T081232_2 1084 KVKTKERILRAVRQK-H*VTYKGKPIRLTADFSVETLQARRDWGPIFSLLK*N-NYQLRILYPVKLSTIYKGKIQSFSDKQMLREFAISKPPL 1174 *************98.9*******************************99777.79************************************* PP HHHHTT CS Transposase_22 348 krllke 353 + llk T081232_2 1175 QALLKG 1180 ****97 PP == domain 2 score: -1.0 bits; conditional E-value: 0.069 HHHHHTT---EEETTTEEEEES....SSSEEEESSHH....HHHHHHTT-HHHHHHHTTT-SSXS CS Transposase_22 303 qilkekkfqPrllyPaklsiii....dGeikvfidkt....klrdylstrPalkrllkeknerkd 359 q+lk ++f + l l + i Ge k+f dk + + y + + +l rl+k e+k+ T081232_2 1981 QTLKTQQFSEKKLSVGELELAIkkkmSGEEKYFLDKFvvlfMSHYYCTSKKTLLRLVKKIIEKKE 2045 566666665555544444443311227*********72222345688899999999998777765 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 7.4e-08 0.0006 1 71 [. 1338 1407 .. 1338 1429 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 7.4e-08 Exo_endo_phos_2 1 lliisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehsls 71 ++i ++Y p++ + + +++ l++l++e +s ++ii+GDfN + ++ g +++++ +++ +L +le+ +l+ T081232_2 1338 ITILNLYAPNTG-APKFIKQLLTDLRNEIDS-NTIIVGDFNTPLTALGRSSRQKvNKETMDLNYTLEQMDLT 1407 68999***9999.888888999999999987.7****************88887889999999999988888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.91 # Mc/sec: 11625.66 // Query: T081232_3 [L=3697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-06 24.9 0.1 2e-05 24.0 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.1 1.2e-09 2e-05 2 19 .] 1864 1881 .. 1864 1881 .. 0.96 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 1.2e-09 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa +WM LE+IILSE++Q T081232_3 1864 FAVTWMRLETIILSEVTQ 1881 888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:00.66 # Mc/sec: 16024.98 // Query: T138107_1 [L=3554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.64 # Mc/sec: 15886.55 // Query: T138107_2 [L=3554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:00.88 # Mc/sec: 11553.85 // Query: T138107_3 [L=3554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.77 # Mc/sec: 13204.40 // Query: T001574_1 [L=2619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 585 (0.0358764); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 9858.57 // Query: T001574_2 [L=2619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 703 (0.043113); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 13144.76 // Query: T001574_3 [L=2619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 866 (0.0531093); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.75 # Mc/sec: 9990.02 // Query: T284134_1 [L=972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (972 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 4344.89 // Query: T284134_2 [L=972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (972 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 4634.54 // Query: T284134_3 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.069 13.6 0.1 0.16 12.4 0.1 1.6 1 TAF8_C Transcription factor TFIID complex subunit 8 C-term Domain annotation for each model (and alignments): >> TAF8_C Transcription factor TFIID complex subunit 8 C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.1 1e-05 0.16 5 23 .. 16 34 .. 14 38 .. 0.83 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 1e-05 TAF8_C 5 hlPpfPppHTYkrTpvyne 23 hlP +P pHT++ v+++ T284134_3 16 HLPRLPGPHTWRGRRVEMP 34 9**********98777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 3858.15 // Query: T196646_1 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.73 # Mc/sec: 4365.70 // Query: T196646_2 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.2 0.6 0.31 10.9 0.6 1.7 1 SCIFF Six-cysteine peptide SCIFF Domain annotation for each model (and alignments): >> SCIFF Six-cysteine peptide SCIFF # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.6 1.9e-05 0.31 11 29 .. 1009 1027 .. 1004 1028 .. 0.86 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 1.9e-05 SCIFF 11 lkktlkkggCgeCqtSCqS 29 l ++ ++ gCg C ++CqS T196646_2 1009 LPRSSSQAGCGLCASPCQS 1027 6678899***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 4824.40 // Query: T196646_3 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 5054.13 // Query: T179757_1 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 8.5 8.2 0.22 10.7 0.5 3.1 2 DUF3678 Protein of unknown function (DUF3678) Domain annotation for each model (and alignments): >> DUF3678 Protein of unknown function (DUF3678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 1.9 0.033 5.3e+02 11 22 .. 108 121 .. 105 127 .. 0.78 2 ? 10.7 0.5 1.3e-05 0.22 13 25 .. 368 386 .. 362 389 .. 0.76 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.033 DUF3678 11 vSa..sSSSssmlH 22 +S ++SS+ +++ T179757_1 108 TSF*nWTSSCGLSS 121 55577*****8766 PP == domain 2 score: 10.7 bits; conditional E-value: 1.3e-05 DUF3678 13 a......sSSSssmlHrql 25 +SSSss++H ++ T179757_1 368 KeswllfPSSSSSPSHQRR 386 45555669*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 3776.30 // Query: T179757_2 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4720.37 // Query: T179757_3 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.63 # Mc/sec: 3896.18 // Query: T211562_1 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 27.5 0.3 3.8e-06 26.3 0.3 1.7 1 DUF1725 Protein of unknown function (DUF1725) 0.0033 17.0 40.6 0.049 13.2 17.3 2.8 2 Collagen Collagen triple helix repeat (20 copies) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.3 0.3 4.6e-10 3.8e-06 1 19 [] 779 797 .. 779 797 .. 0.98 Alignments for each domain: == domain 1 score: 26.3 bits; conditional E-value: 4.6e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fa++WM+L +I+LSEisQ T211562_1 779 PFATTWMKLKDIMLSEISQ 797 8*****************9 PP >> Collagen Collagen triple helix repeat (20 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 17.3 6.1e-06 0.049 6 55 .. 1586 1635 .. 1585 1637 .. 0.72 2 ! 11.9 21.2 1.6e-05 0.13 2 54 .. 1627 1679 .. 1626 1686 .. 0.87 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 6.1e-06 XXXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXXXXXXXXXX CS Collagen 6 pGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGeaG 55 pG+pG+ ppG++G pG+ ++G++G+ ++G+pG +G+ +pG +G++G T211562_1 1586 PGDPGDLPPPGNPGDPGDLPPPGDPGDLQPPGDPGDPGDLPPPGDPGDPG 1635 67777777888888888888888888777777777777777777777766 PP == domain 2 score: 11.9 bits; conditional E-value: 1.6e-05 XXXXXXXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXXXXXXXXX CS Collagen 2 ppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGea 54 ppG pG+pG+ ppG++GepG+ ++G++G+ ++G+pG +G+ +pG++G + T211562_1 1627 PPGDPGDPGDLPPPGDPGEPGDLPPPGDPGDLPPPGDPGDPGDLPPPGREGGQ 1679 68999999999999999999999999999999999999999999999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 11328.09 // Query: T211562_2 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 785 (0.0481418); expected 326.1 (0.02) Passed bias filter: 282 (0.0172942); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.38s 00:00:02.02 Elapsed: 00:00:00.79 # Mc/sec: 10324.34 // Query: T211562_3 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 11168.99 // Query: T138672_1 [L=1753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 7164.34 // Query: T138672_2 [L=1753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 7835.99 // Query: T138672_3 [L=1752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.80 # Mc/sec: 6265.22 // Query: T305690_1 [L=1388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 625 (0.0383294); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.44s 00:00:01.62 Elapsed: 00:00:00.79 # Mc/sec: 5026.37 // Query: T305690_2 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 13.9 8.1 0.035 13.4 8.1 1.1 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 8.1 2.2e-06 0.035 196 325 .. 476 676 .. 468 679 .. 0.45 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.2e-06 Plasmodium_Vir 196 npkkllsklsCknk................................................................................. 209 n+k+ l+klsC+ + T305690_2 476 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfsss 570 66777777777766677777777777777777777777777777777777777777777777777777777777777777766555555544322 PP Plasmodium_Vir 210 ...spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvseelss 300 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ +ss T305690_2 571 sssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSSSSSS 652 2211.....111111111111111111111111111111........111111112111112222222222222222222222222222222222 PP Plasmodium_Vir 301 nfirniimaaailgtgiflfsylly 325 + + + a+++ + ++ fsy+ly T305690_2 653 SSSPSPS-SASASAASFSSFSYFLY 676 2222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1145 (0.0702196); expected 326.1 (0.02) Passed bias filter: 429 (0.0263093); expected 326.1 (0.02) Passed Vit filter: 269 (0.016497); expected 16.3 (0.001) Passed Fwd filter: 76 (0.00466086); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.42u 0.52s 00:00:02.94 Elapsed: 00:00:00.88 # Mc/sec: 4509.06 // Query: T305690_3 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.77 # Mc/sec: 5153.21 // Query: T051362_1 [L=4820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:00.70 # Mc/sec: 19698.86 // Query: T051362_2 [L=4820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:00.81 # Mc/sec: 17023.70 // Query: T051362_3 [L=4819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.41s 00:00:02.10 Elapsed: 00:00:00.86 # Mc/sec: 16030.63 // Query: T147662_1 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 1886.36 // Query: T147662_2 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 2113.00 // Query: T147662_3 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 9.4 9.0 3 8.1 9.0 1.6 1 DUF1556 Protein of unknown function (DUF1556) Domain annotation for each model (and alignments): >> DUF1556 Protein of unknown function (DUF1556) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 9.0 0.00018 3 32 76 .. 93 140 .. 90 145 .. 0.86 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00018 DUF1556 32 thRaisvnPlPs.nssPskvvrskrParkssaskPtrllvReRn..Rr 76 t Ra++ nP s s P+ v s++ +++ + ++P rl R+R R+ T147662_3 93 TWRALRTNPAASsRSRPPGAVLSRSSRPRALPGQPQRLRARPRAarRE 140 89*******8761688***************************85444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 2230.39 // Query: T220045_1 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 9178.17 // Query: T220045_2 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.61 # Mc/sec: 10983.71 // Query: T220045_3 [L=2341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 9706.09 // Query: T195969_1 [L=2905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 12785.71 // Query: T195969_2 [L=2904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.37s 00:00:01.85 Elapsed: 00:00:00.81 # Mc/sec: 10256.61 // Query: T195969_3 [L=2904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.62 # Mc/sec: 13399.76 // Query: T081660_1 [L=7994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-32 112.9 2.5 2.1e-32 112.3 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.7e-07 30.6 0.8 3.7e-07 29.5 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) 0.003 17.3 1.4 0.006 16.3 1.4 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.3 2.5 3.9e-36 2.1e-32 8 221 .. 2418 2660 .. 2405 2661 .. 0.88 Alignments for each domain: == domain 1 score: 112.3 bits; conditional E-value: 3.9e-36 -EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 8 syRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 ++ pisl+ +d k+lnk++a + ++++kl+++nq+ f pg + + ++ +++++ ++ + k+++++++D +kaF ++++++ l+ l++++++ T081660_1 2418 KFQPISLMDIDAKILNKILAn*iQ---QHIKKLIHHNQVSFIPGMQGWFNIhkstNVIHHMNRTNDKNHMIISIDAEKAFSKIQHPFMLKSLNKLGID 2512 588***************964434...688888*********************88888888889999****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHH CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqellea 186 + +++i++++ ++++++++ng++ e + k+ ++qG +lSPllfn++++ l r +r++ ++v l ++aDD+++ +++ + +ll+ T081660_1 2513 GTYLKIIRAIYDKPTANITLNGQKLEAFLLKTSTRQGHPLSPLLFNIVLEVLARAIRQEKeikgiqsgkEEVELFLFADDMIVCLENPIVsAPNLLKL 2610 ***********************99*********************************99***************************66626666666 PP HHHHHHHTT--BEGGG-EEE.....................ESSEEETTEE CS RVT_1 187 veewlkesglkinpeKtklvlf............sg....kseevkyLGvt 221 +++ +++ +++ + eK++++l+ + ++++kyL ++ T081660_1 2611 ISN-FSSLRIQNQCEKSQAFLYtnnrqtesqimsELlftiATKRIKYLAIQ 2660 655.5789999999******9998888777666511556799999999776 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.8 6.8e-11 3.7e-07 1 19 [] 3128 3146 .. 3128 3146 .. 0.97 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 6.8e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T081660_1 3128 SFAGTWMKLETIILSKLKQ 3146 7***************998 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 1.4 1.1e-06 0.006 2 107 .. 2001 2111 .. 2000 2118 .. 0.78 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.1e-06 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y +++ + + +++ l++l ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l ++k++ tf se++ T081660_1 2001 TILNIYASNTG-APRFIKQVLRDLQRDLDS-HTIIVGDFNTSQSILDRSMRQNiNKDIQDLNSALHQAELIDSfrtLHPKSTeYTFFSESHh 2090 78999999999.888888888888888887.8***********9999988888899999999999999887335553444444888888886 PP Exo_endo_phos_2 88 .ssiiDltltsdnlakslele 107 s D ++ s++l+ +++ + T081660_1 2091 tYSKTDHIIGSKTLLSKCKRT 2111 678899999999998885555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.08u 0.39s 00:00:02.47 Elapsed: 00:00:00.71 # Mc/sec: 32210.53 // Query: T081660_2 [L=7994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-86 289.6 21.1 5.8e-86 288.5 21.1 1.5 1 Transposase_22 L1 transposable element 0.0003 20.9 4.6 0.00058 19.9 4.6 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain ------ inclusion threshold ------ 0.29 11.0 7.4 1.2 8.9 1.2 2.4 2 HSBP1 Heat shock factor binding protein 1 5 7.3 8.2 10 6.3 8.2 1.5 1 ABC_tran_CTD ABC transporter C-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 288.5 21.1 1.4e-89 5.8e-86 2 367 .. 1529 1867 .. 1527 1868 .. 0.88 Alignments for each domain: == domain 1 score: 288.5 bits; conditional E-value: 1.4e-89 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakelealkekeentekqlkiikek 91 G+ + ++ +nsk +++s+P+k+++ss + e+ +++++f+el + ++++ + +elke + +++ke k++ee e l + T081660_2 1529 GRNQ---RKNAENSKNQNASSPPKNHNSSRTR--EQTWMENEFDELTEVGFRRwviTNSSELKEHVITQCKEA---KNLEERLEELLTRMT-- 1611 4445...67899*************9998655..******************955568899999999999996...677777666666222.. PP ..............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH..HHHHHHH.HHHHHHHHHH CS Transposase_22 92 qentskqvmemn.kellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid..revkere.krkkileqsl 180 +e n ++l+elk ++el + s++srid+ eer+s +ed+++e + + +e++ k + ++ T081660_2 1612 --S-----LEKNiNDLMELKNTAQELCEAST------------------SINSRIDQAEERISEIEDQLNERK*kDKIREKK*KETNKAFKKY 1679 ..2.....22221589********9988776..................*********************98553566666566677777788 PP HHH.HHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS CS Transposase_22 181 qvi.qdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekG 272 + +d + +iG es+ +++++len+l++ii+enfPn +++an++iqei+rtP+r++ +r+++rh ivr+t ++k+k l a+rekG T081660_2 1680 GTM*KDQIYV--WSMIGGTESDGKNGTELENTLRDIIQENFPNPARQANIQIQEIQRTPQRHSLRRTTPRHTIVRFTTFEMKHKRLSAAREKG 1770 8889888865..679****************************************************************************** PP -EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH.HHHHTT..T-SSXSSXX CS Transposase_22 273 rvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal.krllke..knerkdryq 362 vt kGkPir tadlsa tl+a rew+++++i kek fqPr++yPakls+i++G ik f dk++lrd+++trPal + llke ++er++ryq T081660_2 1771 WVTHKGKPIRATADLSARTLQAGREWGPIFNIHKEKSFQPRISYPAKLSFISKGKIKSFPDKQMLRDFVTTRPAL*E-LLKEalNMERNNRYQ 1862 **************************************************************************888.667779********* PP XXXXX CS Transposase_22 363 aleqa 367 +l+++ T081660_2 1863 PLRKH 1867 **998 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 4.6 1.4e-07 0.00058 23 99 .. 1581 1657 .. 1560 1658 .. 0.91 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 1.4e-07 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 23 edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 +++++ ++++ ++ ++l+ +leel ++ +l k+I +++ k+ a+el + + +++ +++++e++ +e+e++l++ T081660_2 1581 NSSELKEHVITQCKEAKNLEERLEELLTRMTSLEKNINDLMELKNTAQELCEASTSINSRIDQAEERISEIEDQLNE 1657 5677889999999*************************************************************986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 1.2 0.0003 1.2 25 48 .. 1599 1622 .. 1596 1625 .. 0.89 2 ? 5.1 0.6 0.0049 20 21 44 .. 1633 1656 .. 1628 1658 .. 0.90 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0003 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r++++ +r+ +LEk+i+dlm+ T081660_2 1599 LEERLEELLTRMTSLEKNINDLME 1622 668********************7 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0049 HSBP1 21 msdqilsriDdMssriDdLEksia 44 s++i sriD+ ++ri ++E +++ T081660_2 1633 ASTSINSRIDQAEERISEIEDQLN 1656 599*****************9987 PP >> ABC_tran_CTD ABC transporter C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 8.2 0.0025 10 8 68 .. 1594 1652 .. 1591 1653 .. 0.90 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0025 ABC_tran_CTD 8 releeleaeIeaLEaeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeLe 68 +e ++le+++e+L +++++le+ ++d l++ ++++el + + +++ +++++er e e T081660_2 1594 KEAKNLEERLEELLTRMTSLEKNIND--LMELKNTAQELCEASTSINSRIDQAEERISEIE 1652 899**********************5..5577899*********************77765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 620 (0.0380228); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.87u 0.49s 00:00:03.36 Elapsed: 00:00:01.08 # Mc/sec: 21175.44 // Query: T081660_3 [L=7994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.43s 00:00:02.69 Elapsed: 00:00:00.93 # Mc/sec: 24590.83 // Query: T093386_1 [L=3019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-55 185.7 0.8 1.2e-54 184.9 0.8 1.4 1 Gag_p30 Gag P30 core shell protein 1.9e-08 34.0 0.0 3.6e-08 33.0 0.0 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 3.7e-08 33.4 0.0 6.3e-08 32.7 0.0 1.4 1 RVP Retroviral aspartyl protease 2e-06 27.9 0.0 3.8e-06 27.0 0.0 1.4 1 rve Integrase core domain 3.6e-05 23.8 0.4 0.00011 22.2 0.4 2.0 1 zf-H2C2 His(2)-Cys(2) zinc finger ------ inclusion threshold ------ 0.04 13.6 0.2 0.086 12.6 0.1 1.4 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 184.9 0.8 4.6e-58 1.2e-54 4 210 .. 2 209 .. 1 210 [. 0.97 Alignments for each domain: == domain 1 score: 184.9 bits; conditional E-value: 4.6e-58 Gag_p30 4 pfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne.vdeafpltrpdwdyetaegr 102 pf+++dl nwk+n ps+se+pq+l l+++i+ h+ptw d qll l+ t+e++rvl a k ++ + q p+e v +p t p+wd + + T093386_1 2 PFTSADLLNWKNNTPSYSEKPQALVDLLQTIIQIHNPTWADGHQLLMYLFNTDEKRRVLQAATKWLEEHALASYQNPQEyVRVQLPGTDPQWDPNEGPDM 101 9*****************************************************************99999999988764899***************** PP Gag_p30 103 eslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkea 202 e+lk yr++ll gl+ a++ t++ kv ev+qgkeespa f + l eayr+ytp+dp++pe++ + ++++ qs++dir+klq+ g+ +++ ++l+k a T093386_1 102 ERLKQYREALLEGLKKGAQKATDVNKVSEVIQGKEESPAQFYKGLCEAYRMYTPFDPNSPENQRMINMALVSQSTKDIRRKLQKQAGFVSMNTSQLLKIA 201 **************************************************************************************************** PP Gag_p30 203 ekvynkre 210 +++ r+ T093386_1 202 SQMFVSRD 209 *9998775 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.0 0.0 1.3e-11 3.6e-08 71 222 .] 556 683 .. 553 683 .. 0.91 Alignments for each domain: == domain 1 score: 33.0 bits; conditional E-value: 1.3e-11 EEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEE CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDi 170 l lDlk+ F+s +l+ +++kl+af+ +++ g +++y++++ pqG+ +S ++f ++ + lr++ r g++ll+Y+ D+ T093386_1 556 LHLLDLKDTFFSTRLAPESQKLFAFQWEDP-------------------GLGVTTQYTWTRRPQGFRNSLTIFREALAQDLRKFPARDLGCVLLQYVNDL 636 5679************************77...................55779********************************99************ PP EEEESSHHHHHHHHHHHHH...HHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 171 lilskskeelqelleavee...wlkesglkinpeKtklvlfsgkseevkyLGvtl 222 l+ + + + + + + + +l+++++k++++K +++ +++v+yLG+t+ T093386_1 637 LLGHPT---AIGCAKGTDAll*HLEDCEYKVSKKKAQIC-----RQQVRYLGFTI 683 ***999...677777777733447***************.....9********97 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.0 2.3e-11 6.3e-08 3 100 .. 318 410 .. 316 411 .. 0.94 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 2.3e-11 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++P++k+ + k ie+ + t +++v++ P + kk+ ++ g ++++++ ++ ++ +++ + ++l +p++p++llGrdlL+kl +++ T093386_1 318 NEPMVKMTVRSKDIEFPVNTYPEHSVVTTPVTPLS---KKTIDIIKATGVLKKQAFYLPRTCTVGRHEVIH--QFLYMPDCPLPLLGRDLLSKLRATI 410 68*********************************...77888888888888*******************..*********************9987 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.0 1.4e-09 3.8e-06 38 117 .. 1232 1309 .. 1198 1311 .. 0.75 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 1.4e-09 rve 38 laeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr.pqdnGkvErfnrtlkd 117 a+++++e++ +++ all+ + rfg +r+ sDng ++++ +++ ++ lgi+++++++ + pq+ GkvE++n+t+k+ T093386_1 1232 EAYQTRTEKAREVTRALLRDRIPRFGL--LLRIGSDNGLAFVADLVQKTAKVLGITWKLHAA-S*PQSSGKVEQMNQTIKN 1309 578889995555555555555655555..8*****************************987.****************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 0.4 4.1e-08 0.00011 1 39 [] 1141 1179 .. 1141 1179 .. 0.98 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 4.1e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG+ l++ll +++++ +++++++ ++ C++C+ T093386_1 1141 HETTHLGQGSLEKLLGQYFYISHLSALAKILVQWCVTCR 1179 9*************************************5 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 3.2e-05 0.086 74 145 .. 81 149 .. 7 157 .. 0.68 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 3.2e-05 Gag_p24 74 kissdmllgtgqllaeqsqlmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRleka 145 + + l+gt + ++++++ ++ l+q+r+++l +l+k +++++ ++++++ QG++E+ +f + l +a T093386_1 81 YVRVQ-LPGTDPQWDPNEGPDME--RLKQYREALLEGLKKGAQKATDVNKVSEVIQGKEESPAQFYKGLCEA 149 34444.88888888888888776..89*********************************988887666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.72 # Mc/sec: 11995.62 // Query: T093386_2 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 11827.38 // Query: T093386_3 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-11 42.2 0.0 1.7e-10 41.1 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.1 0.0 1e-14 1.7e-10 8 84 .. 936 1010 .. 931 1042 .. 0.81 Alignments for each domain: == domain 1 score: 41.1 bits; conditional E-value: 1e-14 EEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH CS RNase_H 8 tDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw 84 D s++ n +ge++ag+ v+ + + +++l++ +++++aEL+A+i aL+ + ++++vniytDS+Y++ +++ vh++ T093386_3 936 MDRSSFVNpQGERCAGYaVVTVD-TVIEAKSLHQGTSAQKAELIALIWALElS--EGKAVNIYTDSRYAFLTLQ--VHGA 1010 6889999989999****666656.3355577779*****************55..9*************98444..4554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 11827.38 // Query: T168760_1 [L=3129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-35 122.3 0.0 3.3e-35 121.7 0.0 1.3 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 9e-09 35.3 4.8 1.6e-08 34.5 4.8 1.3 1 GP41 Retroviral envelope protein 0.0004 20.3 0.7 0.00092 19.1 0.7 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.02 14.3 0.0 0.033 13.6 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.042 13.7 0.3 0.073 12.9 0.3 1.4 1 G-patch G-patch domain Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 121.7 0.0 1e-38 3.3e-35 1 199 [. 275 476 .. 275 482 .. 0.90 Alignments for each domain: == domain 1 score: 121.7 bits; conditional E-value: 1e-38 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllarvgssqlaaqlwkeeleee..ekdrvnraagpikissdmllgtgqllaeqsqlmqn 96 +k Lk+lk v + g +sp+++ l ++l + +p d+++l++ ++s a+ + ee + +r+n+a g ++i+ dmllg g++ + ++q+ + T168760_1 275 FKLLKELKASVVNNGVQSPFTLGLPESLFGAMrlIPFDVKHLAQI-CLSASAYLTRNLNWEEMcaDQARQNHATGHRDITEDMLLGNGPYSDLEHQMALP 373 689************************97777779***9998875.5545555444444444466669999999************************** PP Gag_p24 97 vevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraCqgvg 196 +++q ++ a++ ip++g++ +s+++i QG +Ep f +Rl++a++k+++ a ++ + +La+eNAN +C+ +l p++ + +l+++lra q+vg T168760_1 374 DAAYKQCALAAKCAWATIPEEGVPVQSFLHITQGLQEPCAHFLERLQEAVKKQIPHTMAAEMQTVTLAFENANVDCKCALAPVKYTEELGNFLRASQDVG 473 99************************************************************************************************** PP Gag_p24 197 gav 199 + T168760_1 474 TEL 476 964 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.5 4.8 4.9e-12 1.6e-08 3 84 .. 2059 2140 .. 2057 2144 .. 0.95 Alignments for each domain: == domain 1 score: 34.5 bits; conditional E-value: 4.9e-12 XXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX.. CS GP41 3 avslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase 84 +++l ++q+ + v++ + ++ + i+ +l+ v l+ +vl lG++ +sl+ q++l Ch n iCv ++ yn+se T168760_1 2059 SITLHSSIQTVQYVQNWMHTANQVWLLHNRINTELQTEVAMLKSIVLWLGEQAQSLQLQQQLCCHLNATHICVNNLEYNQSE 2140 788999***********99999999999*****************************************************9 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.7 2.8e-07 0.00092 24 62 .. 1526 1564 .. 1509 1565 .. 0.88 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 2.8e-07 HERV-K_REC 24 tkkaepptwaqlkkltqlatkylentkvtqtpesmllaa 62 t + p tw qlkk q a k le ++tp++m+la T168760_1 1526 TTTSTPITWGQLKKTMQEAEKLLERQGQAKTPDAMFLAC 1564 667889*******************************95 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 1e-05 0.033 130 172 .. 402 442 .. 372 469 .. 0.74 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1e-05 Gag_p30 130 kevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsf 172 +++qg +e+ a flerl+ea ++ p+ ++ q v+l+f T168760_1 402 LHITQGLQEPCAHFLERLQEAVKKQIPHTMAAEMQT--VTLAF 442 4699************************99888775..55555 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.3 2.2e-05 0.073 11 44 .. 503 536 .. 502 537 .. 0.97 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2.2e-05 G-patch 11 kmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 kmG+ +GL k+ qG+ +Pi+ ++dr+GlG+ T168760_1 503 KMGYQSRKGLEKSLQGNPDPISISGQTDRKGLGV 536 9********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.70 # Mc/sec: 12787.91 // Query: T168760_2 [L=3129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-18 65.7 0.1 4.4e-18 64.6 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 1.1e-08 34.8 0.0 1.7e-08 34.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00032 20.4 0.4 0.00097 18.9 0.4 1.8 1 Integrase_Zn Integrase Zinc binding domain 0.0035 17.4 0.1 0.054 13.6 0.1 2.2 2 rve Integrase core domain ------ inclusion threshold ------ 0.032 13.9 0.5 0.05 13.3 0.5 1.2 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.6 0.1 1.4e-21 4.4e-18 1 56 [. 881 936 .. 881 943 .. 0.93 Alignments for each domain: == domain 1 score: 64.6 bits; conditional E-value: 1.4e-21 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE- CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprq 56 pqk+ l++d+l++LNDfQ+LlgdI W++ +lgi t+ Lk+L+++L+Gds+l+ p T168760_2 881 PQKVVLHKDRLQILNDFQQLLGDIHWLCAMLGIATYRLKHLYQTLQGDSSLDFPAA 936 69*************************************************97765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 0.0 5.1e-12 1.7e-08 143 221 .. 801 873 .. 798 874 .. 0.91 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 5.1e-12 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 ++ f+ + l+e + ++ ++++++DDil+++ + + l++l ++ ++ l +++lki peK++++ ++++yLG + T168760_2 801 CQHFVGQTLKETLNMFPTAHIIHFMDDILLATPTDQILHQLFRERKQALTKWNLKIGPEKVQAT------SPYHYLGTI 873 5667777777888878999*********************************************......9******76 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.4 3e-07 0.00097 14 37 .. 1238 1261 .. 1235 1262 .. 0.95 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 3e-07 Integrase_Zn 14 aLrkkFkitreqAreIVqsCptCq 37 aL+++F+++ +qAr q+CptCq T168760_2 1238 ALTRMFHLPHSQARTMAQACPTCQ 1261 9**********************8 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.6 0.1 1.7e-05 0.054 3 32 .. 1278 1305 .. 1277 1305 .. 0.87 2 ? 1.0 0.0 0.13 4.1e+02 60 79 .. 1332 1349 .. 1326 1349 .. 0.77 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1.7e-05 rve 3 rpgelwqvDvtvgripdgggkayllvvidd 32 +p+e+wq+Dvt+++ +++ +y++v id+ T168760_2 1278 APNEIWQMDVTHIAAFGK--LSYVHVTIDT 1305 69************6655..5*******95 PP == domain 2 score: 1.0 bits; conditional E-value: 0.13 rve 60 arfggvepervlsDngseyt 79 a+ g p+ + +Dng++yt T168760_2 1332 AHMGI--PKQLKTDNGPAYT 1349 33444..9**********97 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.5 1.5e-05 0.05 105 181 .. 2146 2218 .. 2137 2240 .. 0.70 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.5e-05 HHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHH.HHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX.... CS GP41 105 dlsklhneiediqnqqektlqeldkldklaqslannfksln.WvsyikltvliiavgvalrvvlivllllPvlfksla 181 d+ +l+n+i d ++q +++++ l+ + + ++++sln W++ k + i +++++++ ++ l + + ++ a T168760_2 2146 DIGELQNKILDLNKQTQEFQP---SLEVWS-EFLQGLESLNiWTN-LKHYINISYIVIGMMLFSLCFLFIVCKIRWTA 2218 7789*****************...777777.77778888887887.46666676666666666666665555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.72 # Mc/sec: 12432.69 // Query: T168760_3 [L=3128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-10 40.3 0.0 5e-10 39.6 0.0 1.3 1 RNase_H RNase H 2.5e-09 36.7 0.2 4.5e-09 35.9 0.2 1.4 1 Gag_p10 Retroviral GAG p10 protein 0.0033 16.5 0.5 0.0083 15.3 0.5 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.6 0.0 9.2e-14 5e-10 6 139 .. 1097 1219 .. 1094 1223 .. 0.75 Alignments for each domain: == domain 1 score: 39.6 bits; conditional E-value: 9.2e-14 EEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHH CS RNase_H 6 vYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknke 102 +tDGs++ g+a+++ +k+ + +++ +++r EL+ vi +L+ + +++ +ni+ DS Yvv+ + + +++ + k t e ++ + T168760_3 1097 YFTDGSSK-----GRAAMLGPKH---TQTIRIS-GLSAQRSELITVILVLElT--ASTPINIVCDSAYVVN-VASRIET---ATIKSTLEP-ELLS-- 1176 69****66.....9****99866...3333333.458**************66..8999************.5554555...566677777.6777.. PP HHHHHHHCHC..SSEEEEEE-SCCSSS....CHHHHHHHHHHH CS RNase_H 103 laellkelak..kkkvqlkhvkgHaGd....pkgNemaDrlAk 139 l+ +l+++++ + ++++h+ H + gN +aD+l+ T168760_3 1177 LFLRLQQAVRshAAPLHISHICSHIQLpgplSLGNDRADKLVC 1219 444444555512456*********877676767*******985 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.9 0.2 8.3e-13 4.5e-09 27 83 .. 109 164 .. 106 165 .. 0.96 Alignments for each domain: == domain 1 score: 35.9 bits; conditional E-value: 8.3e-13 Gag_p10 27 kflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevL 83 k+lq v +PWF + Gt+d+e+W+ +g+ lk a ++g k++ +v+s+w+l++ vL T168760_3 109 KMLQEVIMHNPWFLQTGTFDVENWDTAGEGLK-WAHQKGLKVDPSVFSTWSLVHTVL 164 7899999*************************.********************9997 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.5 1.5e-06 0.0083 5 25 .. 1443 1463 .. 1440 1469 .. 0.94 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.5e-06 EEE-SSTTS--EEEEEEEEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikg 25 v wk l +g+WkGP+ +L++g T168760_3 1443 VLWKSLEEGQWKGPVDLLTWG 1463 88******************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.23u 0.40s 00:00:01.63 Elapsed: 00:00:00.79 # Mc/sec: 11327.44 // Query: T238294_1 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 5500.05 // Query: T238294_2 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6845.92 // Query: T238294_3 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6293.83 // Query: T212556_1 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 9610.60 // Query: T212556_2 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.75 # Mc/sec: 8201.05 // Query: T212556_3 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 8663.08 // Query: T356795_1 [L=237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.56 # Mc/sec: 1210.74 // Query: T356795_2 [L=237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.63 # Mc/sec: 1076.22 // Query: T356795_3 [L=236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.59 # Mc/sec: 1144.33 // Query: T000142_1 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.65 # Mc/sec: 13102.60 // Query: T000142_2 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.65 # Mc/sec: 13102.60 // Query: T000142_3 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.89 # Mc/sec: 9569.32 // Query: T090237_1 [L=4308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.45s 00:00:02.39 Elapsed: 00:00:00.89 # Mc/sec: 13847.70 // Query: T090237_2 [L=4307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 509 (0.0312155); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.65 # Mc/sec: 18956.30 // Query: T090237_3 [L=4307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 809 (0.0496136); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.42s 00:00:02.85 Elapsed: 00:00:00.95 # Mc/sec: 12970.10 // Query: T227545_1 [L=404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 79 (0.00484484); expected 326.1 (0.02) Passed bias filter: 22 (0.0013492); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 1778.12 // Query: T227545_2 [L=403] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 86 (0.00527413); expected 326.1 (0.02) Passed bias filter: 34 (0.00208512); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 1801.43 // Query: T227545_3 [L=403] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.64 # Mc/sec: 1801.43 // Query: T260937_1 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 7338.65 // Query: T260937_2 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 7557.72 // Query: T260937_3 [L=1769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 7229.73 // Query: T194281_1 [L=4641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.41s 00:00:01.93 Elapsed: 00:00:00.77 # Mc/sec: 17243.00 // Query: T194281_2 [L=4640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.46s 00:00:02.07 Elapsed: 00:00:00.84 # Mc/sec: 15802.68 // Query: T194281_3 [L=4640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.43s 00:00:01.95 Elapsed: 00:00:00.74 # Mc/sec: 17938.18 // Query: T361769_1 [L=2807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-24 85.8 5.8 1e-23 84.2 5.8 1.8 1 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.2 5.8 6.1e-28 1e-23 2 210 .. 310 517 .. 309 527 .. 0.86 Alignments for each domain: == domain 1 score: 84.2 bits; conditional E-value: 6.1e-28 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361769_1 310 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 402 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkrsgpsssplsspassrsqtperpakkvreeegqsssssaslksdkesqeekaaetptgkkqnsrsssptsgssrprKRK....ipLlp.... 192 +g+ l +++p + l+ p ++s pe++a kv + + +ss+ l+ +k++q++ a +++ + r ++ s r rKRK + p T361769_1 403 GGI-LLFGKPDPVPTVLPAPVPGCSLWPEKAALKVLGKD-HLPSSPGLLMVGKDMQPKDPAALGSSRSSPPR--ATGYRSHRSRKRKllgpL---Pqlqp 495 ***.7799***************************7777.89***************999988666666454..556667777777754442...12445 PP POM121 193 .......srrgeqltLPpppqlGys 210 ++r+e Ppp++l++ T361769_1 496 tpplqlrWDRDE---PPPPAKLPCL 517 9999999*****...6999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 12167.20 // Query: T361769_2 [L=2807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.74 # Mc/sec: 10851.82 // Query: T361769_3 [L=2806] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2806 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.57 # Mc/sec: 13840.50 // Query: T140991_1 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.60 # Mc/sec: 2074.10 // Query: T140991_2 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 2109.26 // Query: T140991_3 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.57 # Mc/sec: 2140.69 // Query: T235811_1 [L=7283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.64u 0.48s 00:00:03.12 Elapsed: 00:00:00.98 # Mc/sec: 21260.64 // Query: T235811_2 [L=7282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.50s 00:00:03.00 Elapsed: 00:00:00.98 # Mc/sec: 21257.72 // Query: T235811_3 [L=7282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.46u 0.41s 00:00:02.87 Elapsed: 00:00:00.85 # Mc/sec: 24508.90 // Query: T264774_1 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 3788.13 // Query: T264774_2 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 80 (0.00490617); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.65 # Mc/sec: 3375.78 // Query: T264774_3 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-07 29.3 0.9 1.5e-06 27.9 0.9 1.8 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.0003 20.4 5.8 0.00072 19.2 5.8 1.6 1 DUF4391 Domain of unknown function (DUF4391) ------ inclusion threshold ------ 0.064 13.4 0.0 0.11 12.7 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.9 2.8e-10 1.5e-06 30 118 .. 439 535 .. 432 536 .. 0.81 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 2.8e-10 Exo_endo_phos_2 30 kskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ssiiDltltsdnlaks..leleeedlgSD 114 + +++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + s iD ++ s+ l+ + ++ ++++SD T264774_3 439 D-SHTIIMGDFNTPLSTLDRSTKQKvNKDTQELNSALHQADLIDIyrtLHPKSTeYTFFSAPHhtCSKIDHIVGSKALLGKckRSDIITNCLSD 531 3.38**************99777779***************9966666444444477766666568***************99888889***** PP Exo_endo_phos_2 115 Hrpi 118 H +i T264774_3 532 HGAI 535 *887 PP >> DUF4391 Domain of unknown function (DUF4391) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 5.8 1.3e-07 0.00072 96 241 .. 528 655 .. 497 655 .. 0.73 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 1.3e-07 DUF4391 96 vlsyddevllslahkRlnqadkgkivleeefitewl..pedeeslelekasdieaafldalalknlpktdlkalYqelidklialeaarltgvfslndke 193 +ls++ ++l l k+l q++++ ++l++ + + e++++++ f++ ++ ++ + Yq+l d++ a+ g f + +++ T264774_3 528 CLSDHGAIKLELRIKKLTQNRSTTWKLNNLLLNDYWvhNEMKAEIK---------MFFE-------TNENKNTTYQNLWDTFKAVCR----GKFIALNAH 607 56677789999*******************9988772333333333.........4666.......555555555555555555555....555554447 PP DUF4391 194 diaerrerlreieelekeiaklkkklkkekqfnrkvelnlelkkleke 241 + ++ r + +++++ ke++k ++ ++k+ ++ ++++elk++e++ T264774_3 608 NRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQ 655 7788888888888888888888888999999999999*******9986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 2e-05 0.11 71 113 .] 435 532 .. 180 532 .. 0.84 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 2e-05 CSEEEEEEEEEEE-SS......................................................-BEEEEEEHHHHTTEEEEEEECCH.. CS xxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxxxx.. RF Exo_endo_phos 71 rfpltslvivlGDfNa......................................................rlDrilaskelatersgvldepla.. 110 ++ l+s i++GDfN+ +D+i+ sk+l + + T264774_3 435 QRDLDSHTIIMGDFNTplstldrstkqkvnkdtqelnsalhqadlidiyrtlhpksteytffsaphhtcsKIDHIVGSKALLGKCKR------Sdi 524 45566679********99999999999999999988888888888888888888888888888888888888999999733222222......122 PP .....SSB CS .....xxx RF Exo_endo_phos 111 .....SDH 113 SDH T264774_3 525 itnclSDH 532 33456777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1575 (0.0965902); expected 326.1 (0.02) Passed bias filter: 407 (0.0249601); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 3134.65 // Query: T089139_1 [L=3063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.81 # Mc/sec: 10818.18 // Query: T089139_2 [L=3062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-14 53.6 0.0 2.6e-14 53.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 1.3e-05 24.9 1.0 1.3e-05 24.9 1.0 2.1 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.027 14.1 2.7 0.072 12.7 2.7 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.1 12.3 1.1 0.36 10.5 1.1 2.0 1 zf-CCHC_2 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.1 0.0 6.4e-18 2.6e-14 133 210 .. 2365 2442 .. 2364 2443 .. 0.98 Alignments for each domain: == domain 1 score: 53.1 bits; conditional E-value: 6.4e-18 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089139_2 2365 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 2442 79*************************************************************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.1 0.7 4 1.6e+04 7 11 .. 161 165 .. 161 165 .. 0.96 2 ! 24.9 1.0 3.2e-09 1.3e-05 2 17 .. 2492 2507 .. 2491 2508 .. 0.94 Alignments for each domain: == domain 1 score: -4.1 bits; conditional E-value: 4 SSSSS CS zf-CCHC 7 GepGH 11 G+pGH T089139_2 161 GQPGH 165 9**** PP == domain 2 score: 24.9 bits; conditional E-value: 3.2e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089139_2 2492 SCFKCQKSGHWAKECP 2507 6**************9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 2.7 1.8e-05 0.072 1 18 [. 2489 2506 .. 2489 2507 .. 0.96 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.8e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089139_2 2489 PSGSCFKCQKSGHWAKEC 2506 7999************** PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 1.1 8.9e-05 0.36 6 20 .. 2493 2507 .. 2492 2508 .. 0.94 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 8.9e-05 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C C+k GH+ ++CP T089139_2 2493 CFKCQKSGHWAKECP 2507 888************ PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:00.77 # Mc/sec: 11376.44 // Query: T089139_3 [L=3062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.77 # Mc/sec: 11376.44 // Query: T341320_1 [L=1352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 5688.00 // Query: T341320_2 [L=1351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00075 20.1 0.1 0.0016 19.0 0.1 1.5 1 FAM183 FAM183A and FAM183B related Domain annotation for each model (and alignments): >> FAM183 FAM183A and FAM183B related # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.1 1e-07 0.0016 24 73 .. 1022 1067 .. 1011 1094 .. 0.90 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1e-07 FAM183 24 PsklevltdkpnpekseeeeeeeeedqdflktlkklskeprqkyklPqTe 73 P + +++t+kp+ s +++ e+++d+++l++++++s+ r+ky+ qTe T341320_2 1022 P-TGHMITRKPM---SLHDNLEKPTDARLLNLIHHASQGSRKKYPEIQTE 1067 4.6699******...*******************************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 5768.63 // Query: T341320_3 [L=1351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 1.1e-05 0.18 1 19 [] 4 21 .. 4 21 .. 0.92 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 1.1e-05 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fa+++ E+ +IILSEi+Q T341320_3 4 SFAATCVEV-TIILSEITQ 21 799999999.********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 5856.03 // Query: T176634_1 [L=647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 3034.36 // Query: T176634_2 [L=646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 29.1 25.2 0.00082 19.9 5.5 3.7 3 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 0.6 1e-05 0.16 16 58 .. 108 147 .. 98 169 .. 0.77 2 ! 6.7 4.8 0.00066 11 4 74 .. 188 264 .. 186 266 .. 0.73 3 ! 19.9 5.5 5e-08 0.00082 1 55 [. 285 339 .. 285 370 .. 0.90 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1e-05 EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCCCCC CS UPAR_LY6 16 veCpeadsvCvsatlklqagnlettlvvkgCaresscrlladf 58 ++C+ +++ Cv+ + g+ + kgCa+ + c+l ++ T176634_2 108 MNCTGKQTACVTLHGTWSRGG---PQILKGCATPEVCNLHENA 147 79*************999665...99***********544433 PP == domain 2 score: 6.7 bits; conditional E-value: 0.00066 EEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTTEEE.EEEEEEEESCCGG......CCCCCCSTSECEEEEEEEESST CS UPAR_LY6 4 Clge.ssesClpeveCpeadsvCvsatlklqagnlet.tlvvkgCaressc......rlladfinigsikvsesccqsd 74 C +sC p Cpe++++C++ + g+ + + + C++++ c + l +++ + v+++ccq++ T176634_2 188 CFTC*DLHSCGPL-PCPEDNHYCLQMAGITGFGEGNPvSWRNGFCVTSKDCkfgnsiYALTYGVGF-GFCVNTTCCQGN 264 5555567899999.***********9998888885550555556*******998844334444433.467899***975 PP == domain 3 score: 19.9 bits; conditional E-value: 5e-08 EEEEEEBTTTBCCCC..EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCC CS UPAR_LY6 1 CysClgessesClpe..veCpeadsvCvsatlklqagnlettlvvkgCaresscrll 55 C++C g e C+++ ++Cp ++s Cv+ l+ ++g+ +++ v+gC c+ l T176634_2 285 CPTCPGSYLEPCNSSfyMQCPSGESECVQLDLTSEEGG--RNVNVRGCGSRDLCSAL 339 *************************************9..88999***999999544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 2758.35 // Query: T176634_3 [L=646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 3242.27 // Query: T352815_1 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 3879.09 // Query: T352815_2 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 3415.92 // Query: T352815_3 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 659 (0.0404146); expected 326.1 (0.02) Passed bias filter: 500 (0.0306636); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.76 # Mc/sec: 3011.40 // Query: T359851_1 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.74 # Mc/sec: 4890.47 // Query: T359851_2 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 5932.70 // Query: T359851_3 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 5744.36 // Query: T379174_1 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.61 # Mc/sec: 1922.85 // Query: T379174_2 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 1954.90 // Query: T379174_3 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-33 113.5 0.6 4.9e-33 112.9 0.6 1.2 1 KKLCAg1 Kita-kyushu lung cancer antigen 1 Domain annotation for each model (and alignments): >> KKLCAg1 Kita-kyushu lung cancer antigen 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.9 0.6 3e-37 4.9e-33 1 84 [. 105 187 .. 105 190 .. 0.96 Alignments for each domain: == domain 1 score: 112.9 bits; conditional E-value: 3e-37 KKLCAg1 1 qrntgemssnstalalvrasssgstksntdksLsvnslsrdiLnnfPhsiamqkriLvnLriveyklaeLehfLvtkglngalv 84 q n gemss sta+al+r+ s g++ sntd++L +n+lsrdiLnnf hs +mqkr+L nL+ vey++aeLe+fLv++gl+ga+ T379174_3 105 QGNNGEMSSVSTAFALLRRFS-GLISSNTDNDLLFNNLSRDILNNFSHSKNMQKRLLANLKRVEYQMAELEYFLVSEGLRGASG 187 7799**************985.9***********************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 313 (0.0191954); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 1887.22 // Query: T342320_1 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 7801.89 // Query: T342320_2 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 9102.21 // Query: T342320_3 [L=1908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.72 # Mc/sec: 7581.20 // Query: T138426_1 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 6309.29 // Query: T138426_2 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.055 13.3 3.7 4.2 7.3 0.3 2.9 2 HAP2-GCS1 Male gamete fusion factor Domain annotation for each model (and alignments): >> HAP2-GCS1 Male gamete fusion factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.3 0.00065 11 5 27 .. 1050 1073 .. 1049 1117 .. 0.83 2 ? 7.3 0.3 0.00026 4.2 5 28 .. 1243 1276 .. 1242 1297 .. 0.77 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00065 HAP2-GCS1 5 kervdlsGreC.dKiGvslsafak 27 k++v +sG++C d +Gvs s ++ T138426_2 1050 KDEVGVSGSSCkDEVGVSGSSWQR 1073 789********99*********85 PP == domain 2 score: 7.3 bits; conditional E-value: 0.00026 HAP2-GCS1 5 kervdlsGreCdKiGvslsafak..........q 28 k++v +sG +C +Gvs s ++ + T138426_2 1243 KDEVGVSGFSCKEVGVSGSSWQR*ggcvgvllaK 1276 789******************9755555555552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 7178.48 // Query: T138426_3 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 7406.37 // Query: T155648_1 [L=2402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.82 # Mc/sec: 8380.14 // Query: T155648_2 [L=2402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.083 12.4 7.8 0.021 14.3 4.0 2.0 2 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 0.19 3.2e+03 2 7 .. 637 642 .. 637 642 .. 0.95 2 ? 14.3 4.0 1.3e-06 0.021 6 27 .] 1421 1442 .. 1418 1442 .. 0.93 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.19 DUF3704 2 LyVGAS 7 L+VGAS T155648_2 637 LPVGAS 642 9****9 PP == domain 2 score: 14.3 bits; conditional E-value: 1.3e-06 DUF3704 6 ASFGYMPksgIAGSSdSimsnF 27 SFG P+sgIAGS +++m nF T155648_2 1421 SSFGCIPRSGIAGSYGNSMFNF 1442 69*****************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.67 # Mc/sec: 10256.29 // Query: T155648_3 [L=2401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-16 59.8 0.0 2.4e-16 59.2 0.0 1.1 1 PhoPQ_related PhoPQ-activated pathogenicity-related protein Domain annotation for each model (and alignments): >> PhoPQ_related PhoPQ-activated pathogenicity-related protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 1.5e-20 2.4e-16 218 335 .. 158 277 .. 154 286 .. 0.90 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 1.5e-20 PhoPQ_related 218 kaYGewslaledYvaegidellktpefkkLlkivDplsYlerl.tipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsnkevvesl 312 + +G s+ ++ +++ + +tp+f++ ++ vDp+ +++++ t p +++ +sgD+ff d t ++++L+g+k+lr +P ++H + +e+ + l T155648_3 158 RCFGGQSACVRALHTLNVTGNKDTPRFQEKIEHVDPFYHMTHYqTKPELLVFGSGDEFFSTDGTMNFYDQLPGRKYLRAIPSAGHAIDFHETNTYL 253 5688899999999999***************************889*****************************************996666665 PP PhoPQ_related 313 .vafvklvaagkelPeleweiees 335 + f+ ++++++e P+++w+ +e+ T155648_3 254 eIRFFLYLLKEQEFPSISWTKTER 277 37899999***********87665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.76 # Mc/sec: 9037.96 // Query: T258756_1 [L=1555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 8.8 4.8 1.6 8.1 4.8 1.2 1 SR-25 Nuclear RNA-splicing-associated protein Domain annotation for each model (and alignments): >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 4.8 9.9e-05 1.6 52 82 .. 77 107 .. 69 131 .. 0.57 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 9.9e-05 SR-25 52 skekkkkkrrrssssssssssssssssssss 82 +++k +++ ++ + + sssssssssssss T258756_1 77 KSRKLLPRNQVRTFTRTGSSSSSSSSSSSSS 107 3333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 6265.62 // Query: T258756_2 [L=1555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 6843.99 // Query: T258756_3 [L=1554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 885 (0.0542745); expected 326.1 (0.02) Passed bias filter: 430 (0.0263707); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.72 # Mc/sec: 6174.62 // Query: T001708_1 [L=2139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 8382.62 // Query: T001708_2 [L=2139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.78 # Mc/sec: 7845.28 // Query: T001708_3 [L=2139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 8618.75 // Query: T005642_1 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 541 (0.033178); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 4621.04 // Query: T005642_2 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 4965.89 // Query: T005642_3 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 5366.36 // Query: T137751_1 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 9175.69 // Query: T137751_2 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.66 # Mc/sec: 9453.74 // Query: T137751_3 [L=2180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.60 # Mc/sec: 10394.35 // Query: T303737_1 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 6666.76 // Query: T303737_2 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 5410.70 // Query: T303737_3 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 5656.64 // Query: T222046_1 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.69 # Mc/sec: 2259.64 // Query: T222046_2 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 2436.18 // Query: T222046_3 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.65 # Mc/sec: 2398.70 // Query: T381598_1 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 6129.11 // Query: T381598_2 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.81 # Mc/sec: 4990.56 // Query: T381598_3 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 5614.38 // Query: T110254_1 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 2440.65 // Query: T110254_2 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 2514.76 // Query: T110254_3 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2514.76 // Query: T361763_1 [L=4968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.41s 00:00:02.15 Elapsed: 00:00:00.88 # Mc/sec: 16150.69 // Query: T361763_2 [L=4968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-23 83.2 5.8 2e-23 83.2 5.8 2.3 2 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.2 5.8 1.2e-27 2e-23 2 210 .. 418 625 .. 417 635 .. 0.86 2 ? -1.9 1.0 0.13 2.1e+03 102 140 .. 3247 3284 .. 3244 3308 .. 0.81 Alignments for each domain: == domain 1 score: 83.2 bits; conditional E-value: 1.2e-27 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361763_2 418 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 510 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkrsgpsssplsspassrsqtperpakkvreeegqsssssaslksdkesqeekaaetptgkkqnsrsssptsgssrprKRK....ipLlp.... 192 +g+ l +++p + l+ p ++s pe++a kv + + +ss+ l+ +k++q++ a +++ + r ++ s r rKRK + p T361763_2 511 GGI-LLFGKPDPVPTVLPAPVPGCSLWPEKAALKVLGKD-HLPSSPGLLMVGKDMQPKDPAALGSSRSSPPR--ATGYRSHRSRKRKllgpL---Pqlqp 603 ***.7799***************************7777.89***************999988666666454..556667777777754442...12445 PP POM121 193 .......srrgeqltLPpppqlGys 210 ++r+e Ppp++l++ T361763_2 604 tpplqlrWDRDE---PPPPAKLPCL 625 9999999*****...6999999996 PP == domain 2 score: -1.9 bits; conditional E-value: 0.13 POM121 102 glsqlkkrsgpsssplsspassrsqtperpakkvreeeg 140 gl q+++r p+ + l+sp+ s + p +++++ ++e+ T361763_2 3247 GLHQQQQRWAPQLP-LPSPGPSPMKCPSKTKQEWQQEKE 3284 88899999998765.89*****99999999999976654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.78u 0.42s 00:00:02.20 Elapsed: 00:00:00.90 # Mc/sec: 15791.78 // Query: T361763_3 [L=4967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.44s 00:00:02.10 Elapsed: 00:00:00.91 # Mc/sec: 15615.10 // Query: T368628_1 [L=2704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 10314.25 // Query: T368628_2 [L=2704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:00.77 # Mc/sec: 10046.34 // Query: T368628_3 [L=2704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.80 # Mc/sec: 9669.61 // Query: T227000_1 [L=14571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-25 87.6 4.6 4.6e-20 71.7 2.3 2.2 2 Transposase_22 L1 transposable element 3e-06 26.8 0.3 3e-06 26.8 0.3 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 2.3 5.6e-24 4.6e-20 217 310 .. 5546 5637 .. 5539 5642 .. 0.90 2 ! 15.9 0.0 5e-07 0.0041 204 237 .. 5722 5755 .. 5711 5766 .. 0.86 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 5.6e-24 HHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHHS-EEETTEEEE.EEE---HHHHHHHHHHHHHHHHHHH CS Transposase_22 217 eenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrekGrvtlkGkPir.ltadlsaetlkarrewtdviqilke 307 +enf nl k++n+++qe yrtP r++ k ++srh+i+++ k++il +rek ++t+ + l+ad+s etl+arrew dv++ lk T227000_1 5546 NENFLNLDKDINIQVQESYRTPSRFNPKTSTSRHLIIKL---P*DKERILEVAREKKQITYN-RATI*LAADFSVETLQARREWHDVFKGLKK 5634 7************************************75...4559***************7.5666779**********************9 PP TT- CS Transposase_22 308 kkf 310 kk T227000_1 5635 KKK 5637 985 PP == domain 2 score: 15.9 bits; conditional E-value: 5e-07 -HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEE CS Transposase_22 204 qlkklenilnkiieenfPnlkkeanviiqeiyrt 237 q ++ +++ki nfPnl+ke+n+++qe yrt T227000_1 5722 QRNRGRSLFKKITTKNFPNLEKEINIQVQEGYRT 5755 56666789*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.3 3.6e-10 3e-06 8 62 .. 6646 6705 .. 6645 6712 .. 0.85 2 ? -1.9 0.3 0.22 1.8e+03 188 213 .. 6840 6866 .. 6832 6872 .. 0.76 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 3.6e-10 -EEE......-THHHHCTB--.........-------HHHH..................H CS RVT_1 8 syRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav.....eellkal 62 +yR isl+++d k+ln ++a+r +++++k++ ++q+gf p+ + + ++ ++l+ ++ T227000_1 6646 NYRSISLMNIDAKILNTILANRVQQHIKKIIRYDQMGFIPKMQGWFNIhksiiTVLHCYQ 6705 8****************************************9999999876654455443 PP == domain 2 score: -1.9 bits; conditional E-value: 0.22 HHHHHHTT--BEGGG-EEE......ES CS RVT_1 188 eewlkesglkinpeKtklvlfsg.kse 213 ++ k +g+kin++K+ ++l+ + k++ T227000_1 6840 DKFSKVAGYKINKQKSVAFLYANsKQS 6866 5788899************97544333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 532 (0.032626); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 4.07u 0.51s 00:00:04.58 Elapsed: 00:00:01.01 # Mc/sec: 41272.43 // Query: T227000_2 [L=14571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-14 54.5 0.2 1.8e-14 53.6 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.6 0.2 1.1e-18 1.8e-14 63 187 .. 6706 6840 .. 6682 6849 .. 0.87 Alignments for each domain: == domain 1 score: 53.6 bits; conditional E-value: 1.1e-18 CCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--.ST-TTHHHHHHHHHHHHHTT-T.... CS RVT_1 63 kkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglp.qGsvlSPllfnlfmnellrelrkra. 158 + k k++ +++ D +k F+++++++ +++l++++++++ +n+ik++++ +++s+ +n+e+ ++++ g qG+ +SPllfn++++ l + +r++ T227000_2 6706 RMKDKNHKIISTDAEKSFEKIQFHFMIKTLKQLGIERTHLNIIKAIYNRPTASIILNEEKVKTFPLRSG-T*QGCLISPLLFNIVLEVLAKAIRQEKg 6802 456788999***********************************************9998666666666.799**********************99* PP ...........TEEECTTEEEEEESSHHH.HHHHHHHH CS RVT_1 159 ........kgvtllrYaDDililskskee.lqelleav 187 ++v+l ++ DD++++ +++++ ++ le + T227000_2 6803 iksiqigkEEVKLFLFTDDMILYLEEPKDtTKKTLELI 6840 **************************777555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 791 (0.0485098); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.56u 0.65s 00:00:05.21 Elapsed: 00:00:01.12 # Mc/sec: 37218.89 // Query: T227000_3 [L=14571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 774 (0.0474672); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.58u 0.63s 00:00:05.21 Elapsed: 00:00:01.31 # Mc/sec: 31820.73 // Query: T155208_1 [L=3330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.70 # Mc/sec: 13609.38 // Query: T155208_2 [L=3330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.82 # Mc/sec: 11617.76 // Query: T155208_3 [L=3329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.82 # Mc/sec: 11614.27 // Query: T137783_1 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.4 0.5 0.01 15.4 0.5 1.7 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.5 6.1e-07 0.01 1 11 [. 139 149 .. 139 149 .. 0.94 2 ? -3.1 0.9 0.39 6.3e+03 10 14 .. 359 363 .. 359 363 .. 0.95 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 6.1e-07 DUF1725 1 kFagKWMELEn 11 +Fa++WMELE+ T137783_1 139 SFAATWMELEG 149 7*********7 PP == domain 2 score: -3.1 bits; conditional E-value: 0.39 DUF1725 10 EnIIL 14 EnIIL T137783_1 359 ENIIL 363 9***9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.40s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 5746.54 // Query: T137783_2 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1223 (0.0750031); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.52s 00:00:03.00 Elapsed: 00:00:00.88 # Mc/sec: 4505.81 // Query: T137783_3 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1476 (0.0905188); expected 326.1 (0.02) Passed bias filter: 505 (0.0309702); expected 326.1 (0.02) Passed Vit filter: 450 (0.0275972); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.15u 0.47s 00:00:03.62 Elapsed: 00:00:01.13 # Mc/sec: 3478.17 // Query: T089819_1 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.0 0.1 0.041 13.3 0.1 1.2 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.1 2.5e-06 0.041 66 111 .. 993 1038 .. 984 1041 .. 0.90 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2.5e-06 DUF4417 66 qlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 + +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T089819_1 993 KAGGIMLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 1038 4579*****************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 4542.65 // Query: T089819_2 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 4474.85 // Query: T089819_3 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-43 148.1 0.2 3.4e-43 147.6 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.6 0.2 2.1e-47 3.4e-43 1 177 [. 645 839 .. 645 848 .. 0.96 Alignments for each domain: == domain 1 score: 147.6 bits; conditional E-value: 2.1e-47 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpis++++d k+lnk++a+r+++++++l++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l++ T089819_3 645 IPKPGrdttkKENFRPISVMNIDAKILNKILANRIQQHIKELIHHDQVGFIPGMQGWFNIrksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFMLKT 744 899999999999***************************************************999999999999************************* PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsksk 177 l++++++ k +++i+++++++++++ +ng++ e ++ k+g+ qG++lSP+lfn++++ l r +r++ ++v+l ++aDD++++ +++ T089819_3 745 LNKLGIDGKYLKIIRAIYNKPTANIILNGQKLEAFPLKTGTGQGCPLSPFLFNIVLEVLARAIRQEKeikgiqlgkEEVKLPLFADDMIVYLENP 839 ******************************99*********************************99************************9984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 4404.84 // Query: T203172_1 [L=1554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 7288.08 // Query: T203172_2 [L=1554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.73 # Mc/sec: 6090.04 // Query: T203172_3 [L=1553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.82 # Mc/sec: 5418.13 // Query: T316370_1 [L=4174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.44s 00:00:02.14 Elapsed: 00:00:00.79 # Mc/sec: 15115.32 // Query: T316370_2 [L=4174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.44s 00:00:01.96 Elapsed: 00:00:00.80 # Mc/sec: 14926.38 // Query: T316370_3 [L=4174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 17305.95 // Query: T229066_1 [L=7493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.45s 00:00:02.82 Elapsed: 00:00:00.90 # Mc/sec: 23818.00 // Query: T229066_2 [L=7492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.47s 00:00:02.68 Elapsed: 00:00:00.89 # Mc/sec: 24082.40 // Query: T229066_3 [L=7492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-06 26.6 0.0 0.013 14.8 0.0 2.1 2 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 8.2e-07 0.013 113 159 .. 1 46 [. 1 105 [. 0.93 2 ! 9.7 0.0 2.9e-05 0.47 144 210 .] 461 563 .. 457 563 .. 0.83 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 8.2e-07 GAIN 113 lsvdvldtenskearlprfpskirgqrpkdledsvklpkkalkesns 159 l+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k++ + T229066_3 1 LAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPPEE 46 79*******************.9********************9553 PP == domain 2 score: 9.7 bits; conditional E-value: 2.9e-05 GAIN 144 edsvklpkkalke......................................snseg.evvvvfvlYrnLgslLpepsktkyeadrrslrlpsr.vvnSpV 203 +++v lp+++ ++ ++ +g + + +++Y + g+l pe y+++rrsl lp+ ++n++ T229066_3 461 GTQVLLPESSRSAhvaegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYCTPGQLPPE----PYDPNRRSLWLPHWpIINTSM 556 67777888888778888888888888888888888888888888888888655449999999*********9998....8******************** PP GAIN 204 vsasvsk 210 vsa v++ T229066_3 557 VSALVYS 563 ***9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.13u 0.45s 00:00:02.58 Elapsed: 00:00:00.77 # Mc/sec: 27835.50 // Query: T316851_1 [L=1643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.6 5.0 26.5 11 4.0 26.5 1.4 1 PAT1 Topoisomerase II-associated protein PAT1 Domain annotation for each model (and alignments): >> PAT1 Topoisomerase II-associated protein PAT1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 26.5 0.00068 11 161 365 .. 813 1020 .. 809 1097 .. 0.48 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.00068 PAT1 161 aslWgvaekkaaasaaapevaaaaaslasasrkvlsleEvEaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqe 258 sl+g++ +++ + +++p+ ++++++ s++r l l + ++r+++k+++++++++++++ q ++++++ ++a++++a +++q++++++ +++++ T316851_1 813 CSLFGLGRTTREQGRRNPHWHTSKHN--STQRPKLMLTHIKTQLRTTSKTHTHTHQNTTSHNVQNSHTKTRLHTASKTHA--HTHQDTTSHNVQNSRS 906 56677776666666665655555544..3345455588899999999888887776666555433333333333222222..2222222222222222 PP PAT1 259 qeqaaqaqqkkeqgkpvtilqrpqsk..qakpaepsasseaqe...akqqappakvqptqilqnpnrl...aarlelsqkeqaaaqaapeqeakrqqs 348 ++++++++q+ + + +i +r +++ +++++ +++++++ + +++++++ +++p+ l + + +++++++++++ ++++++++++ +++ T316851_1 907 HTSKHNSTQR-PKLTLTHIKTRLHTTskTHAHTRQNTTPHNVQnslSHTSKHNFTQRPKLTLTHIKTQlrtTSKTHTHTHKTRLHTTSKTHTHTSKHN 1003 2222222221.122222222222222002222222222221111222233333333444444443333221222233333333333333332222222 PP PAT1 349 sagkqaqiithpqqlaq 365 a++ + ++t ++ql + T316851_1 1004 FAQRPKLTHTIKTQLHT 1020 22222223333444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1488 (0.0912548); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:00.71 # Mc/sec: 6620.20 // Query: T316851_2 [L=1642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1818 (0.111493); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.45s 00:00:02.18 Elapsed: 00:00:00.84 # Mc/sec: 5592.24 // Query: T316851_3 [L=1642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1759 (0.107874); expected 326.1 (0.02) Passed bias filter: 240 (0.0147185); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.44s 00:00:02.23 Elapsed: 00:00:00.81 # Mc/sec: 5799.36 // Query: T051597_1 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.48 # Mc/sec: 10990.36 // Query: T051597_2 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 10343.86 // Query: T051597_3 [L=1843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 10139.44 // Query: T062665_1 [L=4684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 23928.80 // Query: T062665_2 [L=4683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.57 # Mc/sec: 23098.74 // Query: T062665_3 [L=4683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 8.3 8.2 17 5.5 8.2 2.6 1 GASA Gibberellin regulated protein Domain annotation for each model (and alignments): >> GASA Gibberellin regulated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 8.2 0.001 17 15 39 .. 3160 3184 .. 3156 3198 .. 0.79 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.001 GASA 15 rkkrClraCnlCcekCkCvPsgtag 39 +++ C+ +C C C CvP+ a T062665_3 3160 EHSGCVLVCAGCVGVCGCVPPSPAF 3184 5778****************98765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.56 # Mc/sec: 23503.98 // Query: T126169_1 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 8422.94 // Query: T126169_2 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 8264.02 // Query: T126169_3 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 8759.86 // Query: T278161_1 [L=3020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 702 (0.0430516); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.61 # Mc/sec: 14163.45 // Query: T278161_2 [L=3020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 661 (0.0405372); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.57 # Mc/sec: 14896.05 // Query: T278161_3 [L=3020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 7.7 22.4 1.1 9.1 7.4 2.3 2 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 12.5 0.0012 19 72 120 .. 2130 2178 .. 2112 2185 .. 0.53 2 ? 9.1 7.4 7e-05 1.1 62 126 .. 2172 2238 .. 2170 2244 .. 0.60 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0012 Trypan_PARP 72 peeegeeetepeeegeeetepeeeeepepepetepepepepepepepep 120 p+ ++++ ++p +++++ ++p +++p+ +p + p p p+ +p+p+p+p T278161_3 2130 PDSHPHPHSHPHPHSHPHSHPHLHPHPHSHPHSHPHPHPHSHPHPHPHP 2178 3444444444444444444444444444444444444444444444443 PP == domain 2 score: 9.1 bits; conditional E-value: 7e-05 Trypan_PARP 62 depeeeeetepeeegeeetepeeegeeetepeeeeepe..pepetepepepepepepepepGaatlk 126 ++p +++ ++p ++++ ++p+ ++++ ++p ++ p+ p+p + p+p+ + +p+ p + tl T278161_3 2172 PHPHPHPHSHPHSHSHPHSHPDSHSHPHSHPHPHLLPHshPHPHPHSHPNPHSHSHPHSYPHTLTLT 2238 5677777777777777777777777777777775444400444444444444455555556666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.57 # Mc/sec: 14896.05 // Query: T212595_1 [L=4178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 21343.84 // Query: T212595_2 [L=4178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.64 # Mc/sec: 18675.86 // Query: T212595_3 [L=4178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.68 # Mc/sec: 17577.28 // Query: T251538_1 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 924 (0.0566663); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.66 # Mc/sec: 5782.34 // Query: T251538_2 [L=1333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0017 17.7 56.1 0.0017 17.7 56.1 1.7 2 SDA1 SDA1 Domain annotation for each model (and alignments): >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.5 6.3 1 1.6e+04 320 337 .. 170 187 .. 166 195 .. 0.47 2 ! 17.7 56.1 1.1e-07 0.0017 77 177 .. 950 1040 .. 924 1090 .. 0.46 Alignments for each domain: == domain 1 score: -7.5 bits; conditional E-value: 1 SDA1 320 hkvkskkkrslrekqkal 337 +k k+k+kr+ r k+k++ T251538_2 170 KKKKRKRKRRRRRKEKKK 187 333444443333333332 PP == domain 2 score: 17.7 bits; conditional E-value: 1.1e-07 SDA1 77 ekwkeeekkkkreeeeedsddeddeedwevesdddseedseggwidvesdeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 174 +k+k+ee+++++eeeee+ ++e++ee++e e+++++ee++eg+ +ee++e+e+eeeeeeeee++ee+eeeeeeeeee+eeeeeeeeeee+ T251538_2 950 KKKKKEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEGE---------EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEDEEEEEEEEEEEE 1037 333333333333122222.222222222222222222333333.........2222222222222222333333222222222222222222222222 PP SDA1 175 eke 177 e+e T251538_2 1038 EEE 1040 222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1952 (0.119711); expected 326.1 (0.02) Passed bias filter: 821 (0.0503496); expected 326.1 (0.02) Passed Vit filter: 479 (0.0293757); expected 16.3 (0.001) Passed Fwd filter: 190 (0.0116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.80u 0.45s 00:00:03.25 Elapsed: 00:00:00.79 # Mc/sec: 4827.20 // Query: T251538_3 [L=1333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.4 5.5 8.1 12 4.6 8.1 1.4 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 8.1 0.00075 12 280 315 .. 967 1004 .. 904 1054 .. 0.54 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.00075 DUF913 280 etkeeek................ssededvemedaeaetesesdeeeeseee 315 ++k+++k + + +++++++++++++ T251538_3 967 KKKKKKKkkrkkkrkkkrkkkkkE----------K----KKKKKKKKKKKKK 1004 111111111111111111111110..........1....1111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2858 (0.175273); expected 326.1 (0.02) Passed bias filter: 856 (0.052496); expected 326.1 (0.02) Passed Vit filter: 593 (0.036367); expected 16.3 (0.001) Passed Fwd filter: 112 (0.00686864); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.24u 0.50s 00:00:02.74 Elapsed: 00:00:00.79 # Mc/sec: 4827.20 // Query: T090344_1 [L=1067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-11 44.5 2.3 2.4e-11 43.5 2.3 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.5 2.3 1.5e-15 2.4e-11 12 55 .. 148 191 .. 140 204 .. 0.90 Alignments for each domain: == domain 1 score: 43.5 bits; conditional E-value: 1.5e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090344_1 148 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 191 566889************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 4423.92 // Query: T090344_2 [L=1067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4555.98 // Query: T090344_3 [L=1066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-33 112.4 10.9 1.4e-32 111.5 10.9 1.4 1 Colipase-like Colipase-like ------ inclusion threshold ------ 3.1 7.4 10.9 2.6 7.6 1.8 2.8 2 Colipase Colipase, N-terminal domain Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 111.5 10.9 1.7e-36 1.4e-32 12 89 .] 191 267 .. 186 267 .. 0.97 Alignments for each domain: == domain 1 score: 111.5 bits; conditional E-value: 1.7e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090344_3 191 EPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 267 79*******************9.99***************************************************97 PP >> Colipase Colipase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 2.0 0.0056 46 13 28 .. 196 211 .. 185 217 .. 0.75 2 ? 7.6 1.8 0.00032 2.6 10 38 .. 234 262 .. 232 264 .. 0.87 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.0056 B-SSGGGBSSS-EE-S CS Colipase 13 lClNSaQCKSkCCqhe 28 C C S+CC ++ T090344_3 196 RCSHDSECQSSCCVRN 211 5888889******876 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00032 TTSB-SSGGGBSSS-EE-SSSSS--EE-- CS Colipase 10 dGElClNSaQCKSkCCqhesaLslaRCaa 38 +G+ C C S+CC + s RC + T090344_3 234 NGDFCSSHQECHSQCCIQLREYSPFRCIP 262 7999999999******9999999888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 4484.77 // Query: T035466_1 [L=1232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.70 # Mc/sec: 5035.06 // Query: T035466_2 [L=1232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.65 # Mc/sec: 5422.37 // Query: T035466_3 [L=1232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 795 (0.0487551); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 5035.06 // Query: T236793_1 [L=7411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-26 93.6 1.5 1.8e-25 89.6 0.1 2.2 2 Gag_p30 Gag P30 core shell protein 2.7e-15 56.5 0.0 4.7e-15 55.7 0.0 1.3 1 rve Integrase core domain 4.7e-10 39.2 0.0 7e-10 38.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.1 0.012 65 16 40 .. 2144 2168 .. 2139 2170 .. 0.92 2 ! 89.6 0.1 3.3e-29 1.8e-25 83 185 .. 2212 2314 .. 2198 2320 .. 0.92 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.012 Gag_p30 16 nnpsfsedpqkltaliesillthqp 40 + ps++++pq+l l+++++ th+p T236793_1 2144 DTPSYTKKPQALMDLLQTVIQTHKP 2168 68**********************9 PP == domain 2 score: 89.6 bits; conditional E-value: 3.3e-29 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdi 180 + +p t +wd + +g ++l+ yr++ll gl+ a++ tn+ kv e +qgk+espa f +rl+eayr+ytp+dp + e++ + ++++ qsa di T236793_1 2212 MRIQLPGTDAEWDPNERQGMQRLNRYRKALLEGLKKGAQKVTNVNKVSEAIQGKDESPAQFYKRLREAYRMYTPFDPSSLENQHMINMALVSQSAEDI 2309 456789999***************************************************************************************** PP Gag_p30 181 rkklq 185 ++ ++ T236793_1 2310 KENFK 2314 *9865 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.7 0.0 8.6e-19 4.7e-15 4 117 .. 3355 3469 .. 3353 3471 .. 0.88 Alignments for each domain: == domain 1 score: 55.7 bits; conditional E-value: 8.6e-19 rve 4 pgelwqvDvtvgripdgggkayllvviddfsr.....lilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsf 96 p e +qvD+t+++ + gg++yllv + ++s+ + ++++++e ++ +v++++ r + ++g p+ + sDn ++++ +++ ++ lgi++++ T236793_1 3355 PFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGgggggGVEVCPTRTE-KTLEVTCVILRDLIPRFGL-PLQIDSDNRLAFVADLVQKTAKVLGITWKL 3448 77889********..9999************7333336999999999.6777777777777777777.****************************** PP rve 97 trpgrpqdnGkvErfnrtlkd 117 + ++rpq+ GkvE++n+t+k T236793_1 3449 HTTYRPQSSGKVEQMNQTIKS 3469 *******************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.0 1.3e-13 7e-10 122 222 .] 2736 2831 .. 2724 2831 .. 0.91 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 1.3e-13 ..TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEET CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyL 218 + ++++ ++ lpqG+++SP++f ++ +l + + g+ ll Y+DD+l+ + + + + +++ ++l+++g+k+ ++K +++ +++v yL T236793_1 2736 RCHHSVPWTQLPQGFKNSPTIFGGVLA*DLQKFPTRD-LGCLLLEYIDDLLLGHPTAVGCAKGTDTLLQHLEDCGYKVPKKKAQIC-----RQQVSYL 2827 5678999******************988887766665.69**********************************************.....9****** PP TEEE CS RVT_1 219 Gvtl 222 G+t+ T236793_1 2828 GFTI 2831 **97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.27u 0.44s 00:00:02.71 Elapsed: 00:00:00.86 # Mc/sec: 24653.04 // Query: T236793_2 [L=7411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-13 47.7 0.5 1.4e-12 47.1 0.5 1.2 1 Transposase_22 L1 transposable element 0.003 17.0 0.0 0.0047 16.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.1 0.5 1.7e-16 1.4e-12 201 310 .. 4589 4698 .. 4587 4700 .. 0.86 Alignments for each domain: == domain 1 score: 47.1 bits; conditional E-value: 1.7e-16 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236793_2 4589 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 4677 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236793_2 4678 ETL*A-KREWHDIFKELKEKKL 4698 **775.69************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 5.8e-07 0.0047 1 100 [. 2659 2733 .. 2659 2748 .. 0.81 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 5.8e-07 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 +pK+g+ + R+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+ F+s++l+ +++kl+af+ T236793_2 2659 VPKPGAMDCRLaQ-----DLRLVNQATVT---------LHPVVPNLYTLLGL------------LPAEDSWFTCLDLKDIFFSIRLAPESQKLFAFQW 2730 5788888888855.....99999999999.........88888888888444............55788***************************98 PP T.. CS RVT_1 98 ptk 100 +++ T236793_2 2731 EDP 2733 866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.23u 0.42s 00:00:02.65 Elapsed: 00:00:00.95 # Mc/sec: 22317.49 // Query: T236793_3 [L=7410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-09 35.5 0.1 1.8e-08 34.6 0.1 1.3 1 RNase_H RNase H 0.0016 18.0 0.0 0.0032 17.0 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.1 2.2e-12 1.8e-08 39 138 .. 3123 3225 .. 3108 3225 .. 0.79 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 2.2e-12 CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT.HHHHHHHHHCH.CSSEEEEEE-SCCSSS....C CS RNase_H 39 eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn.kelaellkela.kkkkvqlkhvkgHaGd....p 128 + +++++a L+A+i a++ + +d++vniytDS Y++ +++ vh++ +++ +s +k+ k +e+ +ll e++ k++kv +++++gH+ + T236793_3 3123 QGTSAQKAKLIALIWAIElS--EDKTVNIYTDSWYAFLTLQ--VHGALYKEKGLlNSGGKDTKYqQEILQLL-EAV*KPQKVAVMYCRGHQQSftliA 3215 6799**************55..9**************9555..57765544444266666666645666666.5557689**********87779997 PP HHHHHHHHHH CS RNase_H 129 kgNemaDrlA 138 gN +aD+ A T236793_3 3216 LGNSRADSEA 3225 8******865 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 4e-07 0.0032 32 62 .. 2021 2051 .. 2019 2055 .. 0.90 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 4e-07 HHHHHHHHTTGGGGSSS--TT----HHHHHH CS Gag_MA 32 kklitlCsseWptlnvgWPreGtfdltviak 62 +kl+tlC+ +Wp+l+vgW eG d +++ k T236793_3 2021 GKLRTLCEIDWPALEVGWASEGNLDGSLVFK 2051 699********************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.02u 0.42s 00:00:02.44 Elapsed: 00:00:00.84 # Mc/sec: 25236.61 // Query: T326445_1 [L=4034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 695 (0.0426223); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.36s 00:00:02.13 Elapsed: 00:00:00.73 # Mc/sec: 15809.02 // Query: T326445_2 [L=4034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1014 (0.0621857); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.44s 00:00:02.48 Elapsed: 00:00:00.85 # Mc/sec: 13577.16 // Query: T326445_3 [L=4033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:00.82 # Mc/sec: 14070.40 // Query: T295984_1 [L=2374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.70 # Mc/sec: 9702.30 // Query: T295984_2 [L=2374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-05 23.7 0.0 3.3e-05 23.2 0.0 1.1 1 Serpin Serpin (serine protease inhibitor) Domain annotation for each model (and alignments): >> Serpin Serpin (serine protease inhibitor) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 2e-09 3.3e-05 315 366 .. 944 995 .. 943 998 .. 0.86 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 2e-09 EEEESSSEEEEEEEEECCTTCS-SSEEEEEECSEEEEEEEETTTTEEEEEEE CS Serpin 315 fievnEeGteaaaatvatllskksspvefkvdrPFlflireektgliLFlGk 366 f+ev Ee t+aa a+ +t ++++s+ +f++ +P lf++++++t+++LF+G+ T295984_2 944 FMEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGR 995 789************5555555666668***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9303.58 // Query: T295984_3 [L=2374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.73 # Mc/sec: 9303.58 // Query: T236007_1 [L=7911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-05 24.5 0.3 0.0021 17.1 0.0 2.4 2 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.9 0.2 0.00064 11 130 171 .. 4472 4506 .. 4460 4779 .. 0.76 2 ! 17.1 0.0 1.3e-07 0.0021 99 172 .. 5045 5127 .. 5038 5988 .. 0.82 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.00064 PHO4 130 gllaallfllvrrlillkaalkllpllvlltvainaflilyk 171 +++ +++++ ++ ++ ++ +l++++v+++++++++ T236007_1 4472 MMMMVIVMV-------VMTMMVMVMMLMVVMVMMLMMMVTMM 4506 111111111.......12222222222222222222222211 PP == domain 2 score: 17.1 bits; conditional E-value: 1.3e-07 PHO4 99 iGaalaaag.savkwgglvkivlswvlsPllggllaallfllvrrlil..lkaalkllpllvlltvainaflilyk......l 172 i++ ++ + v ++ ++ +++ +++++++ +++ ++++++v+ +++ ++a++ ++ ++++++++++++ i++k T236007_1 5045 IAVVIVVMMvVLVMVMMMAMVIMVMMMAVMVVMVMMVIMMMIVMVMVVkmIMAMVMMMMMIMMVMTMVVIITIMLKtlhttlT 5127 33444432213333456777888888888888888888888888886654333444444444444444445555444444440 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1412 (0.0865939); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 168 (0.010303); expected 16.3 (0.001) Passed Fwd filter: 46 (0.00282105); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.63u 0.52s 00:00:06.15 Elapsed: 00:00:01.44 # Mc/sec: 15716.68 // Query: T236007_2 [L=7911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 414 (0.0253894); expected 326.1 (0.02) Passed Vit filter: 319 (0.0195634); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.59u 0.54s 00:00:07.13 Elapsed: 00:00:01.37 # Mc/sec: 16519.73 // Query: T236007_3 [L=7910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 937 (0.0574635); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.65u 0.55s 00:00:04.20 Elapsed: 00:00:01.12 # Mc/sec: 20204.61 // Query: T286608_1 [L=280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.61 # Mc/sec: 1313.17 // Query: T286608_2 [L=280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.42 10.5 6.2 0.11 12.4 2.4 2.1 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 2.4 6.8e-06 0.11 17 30 .. 210 223 .. 205 224 .. 0.91 2 ? -3.7 0.1 0.71 1.2e+04 27 29 .. 241 243 .. 239 244 .. 0.50 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.8e-06 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T286608_2 210 CSGAISAHCNLCLP 223 *************9 PP == domain 2 score: -3.7 bits; conditional E-value: 0.71 Toxin_18 27 yCL 29 CL T286608_2 241 ACL 243 355 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1405.32 // Query: T286608_3 [L=279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-17 62.7 0.1 3.7e-17 62.3 0.1 1.1 1 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel dom Domain annotation for each model (and alignments): >> Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.3 0.1 2.3e-21 3.7e-17 104 165 .. 42 108 .. 34 122 .. 0.89 Alignments for each domain: == domain 1 score: 62.3 bits; conditional E-value: 2.3e-21 GGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS.....CHHHHHHHHHHHHHHH-TTSEEEEETCSS CS Glyco_hydro_2_C 104 pewlkavldrieelverdkNHpsviiWSlgNEs.....gagedikalaelikklDptRlvhyegvaa 165 + + ++++ ++ee v rdkNHp++++WS++NE+ +ag+ +k++++++k+lDp+ +v+++ +++ T286608_3 42 NVSMHHHMWVVEEPVLRDKNHPAMVMWSVANEPasfleSAGYSFKMVIAHTKALDPSQPVTFVTNST 108 567899*********************************************************9943 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.70 # Mc/sec: 1140.25 // Query: T320404_1 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 7139.27 // Query: T320404_2 [L=1671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.73 9.8 2.7 0.86 9.6 1.2 1.8 2 Phage_lysis Bacteriophage Rz lysis protein Domain annotation for each model (and alignments): >> Phage_lysis Bacteriophage Rz lysis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 0.28 4.5e+03 60 77 .. 94 111 .. 93 113 .. 0.87 2 ? 9.6 1.2 5.3e-05 0.86 56 96 .. 239 279 .. 232 282 .. 0.81 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.28 Phage_lysis 60 aGrrrLrinatcaagvpk 77 aGr rL+ +a ++a++p+ T320404_2 94 AGRERLQNKAWSPAPAPA 111 8*********99998775 PP == domain 2 score: 9.6 bits; conditional E-value: 5.3e-05 Phage_lysis 56 advaaGrrrLr.inatcaagvpkatsaasvddaasarLadaa 96 ++va G r atc+ v +a++aa++++++sar daa T320404_2 239 RAVAMGYRTEAgWLATCSP-VAAASGAARAGRGGSARVRDAA 279 5566666554445689*98.******************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 8691.72 // Query: T320404_3 [L=1671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 8242.15 // Query: T124760_1 [L=3322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.42s 00:00:01.95 Elapsed: 00:00:00.81 # Mc/sec: 11732.93 // Query: T124760_2 [L=3322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.42s 00:00:01.77 Elapsed: 00:00:00.84 # Mc/sec: 11313.90 // Query: T124760_3 [L=3322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.86 # Mc/sec: 11050.79 // Query: T228722_1 [L=7002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-05 23.2 0.0 2.8e-05 22.8 0.0 1.1 1 AMP-binding AMP-binding enzyme Domain annotation for each model (and alignments): >> AMP-binding AMP-binding enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.0 1.7e-09 2.8e-05 380 421 .. 575 614 .. 571 616 .. 0.93 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 1.7e-09 T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEESSSEEE CS AMP-binding 380 nkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421 ++pe tae+ + g+ TGD +++de+Gy++++gR+ d+i+ T228722_1 575 GNPENTAEVEC--GDVCDTGDRATVDEEGYIWFLGRSHDTIN 614 69******988..68*************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.74u 0.49s 00:00:03.23 Elapsed: 00:00:01.00 # Mc/sec: 20031.53 // Query: T228722_2 [L=7002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.56 8.7 9.7 0.91 8.0 9.7 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 9.7 5.6e-05 0.91 187 237 .. 2751 2798 .. 2691 2910 .. 0.62 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 5.6e-05 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 187 sknkkkdkekekkkekssksesgke..eerskdeerekeadkgkdretnrate 237 s+++++++e+e+++e+++ +++g + +er+k+ +e+++ k+ +e T228722_2 2751 SRKRERERERERERERKEGRKEGRKgrKERKKEGRQERKERKRGRG-----KE 2798 3333333322222222222222211001111111111111111111.....11 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.88u 0.52s 00:00:03.40 Elapsed: 00:00:00.99 # Mc/sec: 20233.87 // Query: T228722_3 [L=7001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.40u 0.44s 00:00:02.84 Elapsed: 00:00:01.00 # Mc/sec: 20028.67 // Query: T308748_1 [L=276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 1214.75 // Query: T308748_2 [L=275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 1484.39 // Query: T308748_3 [L=275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.68 # Mc/sec: 1156.95 // Query: T183036_1 [L=7980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.34u 0.48s 00:00:02.82 Elapsed: 00:00:00.89 # Mc/sec: 25651.04 // Query: T183036_2 [L=7980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.44s 00:00:02.92 Elapsed: 00:00:00.96 # Mc/sec: 23780.65 // Query: T183036_3 [L=7979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.45s 00:00:02.61 Elapsed: 00:00:00.89 # Mc/sec: 25647.82 // Query: T103700_1 [L=3452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.59 # Mc/sec: 16738.28 // Query: T103700_2 [L=3452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.44s 00:00:01.86 Elapsed: 00:00:00.86 # Mc/sec: 11483.24 // Query: T103700_3 [L=3452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-142 474.2 20.5 2.9e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.058 13.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.061 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.062 13.7 2.8 0.11 12.8 2.8 1.4 1 Spectrin Spectrin repeat 0.35 11.3 5.0 0.71 10.3 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.44 9.8 12.3 0.76 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.3 0.015 15.3 2.1 2.3 2 Med2 Mediator complex subunit 2 3.3 7.9 7.6 5.8 7.1 6.8 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.4e-145 2.9e-142 1 368 [] 3007 3342 .. 3007 3342 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103700_3 3007 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3092 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103700_3 3093 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3149 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103700_3 3150 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3242 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103700_3 3243 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3335 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103700_3 3336 QLLQNHA 3342 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.8e-05 0.058 1 72 [. 3377 3446 .. 3377 3451 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103700_3 3377 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3446 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.5e-05 0.11 76 175 .. 3031 3154 .. 2997 3161 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.5e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103700_3 3031 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3124 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103700_3 3125 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3154 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 2.8 5.4e-05 0.11 3 94 .. 3072 3161 .. 3070 3163 .. 0.92 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.4e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103700_3 3072 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3161 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 5.0 0.00035 0.71 3 95 .. 3058 3159 .. 3057 3161 .. 0.70 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00035 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103700_3 3058 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3152 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103700_3 3153 QEIWDYV 3159 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00037 0.76 30 124 .. 3060 3154 .. 3056 3161 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00037 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103700_3 3060 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3154 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.8 5.6e+03 77 96 .. 1082 1096 .. 1068 1099 .. 0.43 2 ? 15.3 2.1 7.4e-06 0.015 44 96 .. 3065 3117 .. 3058 3122 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.8 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103700_3 1082 SKKKKRKKERKKR-----KK 1096 2333332222222.....22 PP == domain 2 score: 15.3 bits; conditional E-value: 7.4e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103700_3 3065 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3117 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 6.8 0.0028 5.8 28 89 .. 3090 3149 .. 3070 3157 .. 0.71 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0028 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103700_3 3090 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3149 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 711 (0.0436036); expected 326.1 (0.02) Passed bias filter: 272 (0.016681); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.80u 0.45s 00:00:02.25 Elapsed: 00:00:00.88 # Mc/sec: 11222.26 // Query: T316518_1 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6593.75 // Query: T316518_2 [L=1428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 6007.74 // Query: T316518_3 [L=1428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 6484.55 // Query: T198832_1 [L=257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1492 (0.0915001); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 1267.64 // Query: T198832_2 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1228 (0.0753097); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 1356.25 // Query: T198832_3 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1765 (0.108242); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1558.24 // Query: T233831_1 [L=5633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1318 (0.0808291); expected 326.1 (0.02) Passed bias filter: 388 (0.0237949); expected 326.1 (0.02) Passed Vit filter: 228 (0.0139826); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.67u 0.44s 00:00:04.11 Elapsed: 00:00:00.84 # Mc/sec: 19184.59 // Query: T233831_2 [L=5632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1147 (0.0703422); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 166 (0.0101803); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.01u 0.41s 00:00:03.42 Elapsed: 00:00:00.84 # Mc/sec: 19181.18 // Query: T233831_3 [L=5632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1365 (0.0837115); expected 326.1 (0.02) Passed bias filter: 388 (0.0237949); expected 326.1 (0.02) Passed Vit filter: 241 (0.0147798); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.11u 0.53s 00:00:04.64 Elapsed: 00:00:00.94 # Mc/sec: 17140.63 // Query: T369027_1 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4150.63 // Query: T369027_2 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4296.26 // Query: T369027_3 [L=855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4291.24 // Query: T172339_1 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 7886.35 // Query: T172339_2 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 23.9 0.0 5.9e-05 23.2 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 3.6e-09 5.9e-05 5 54 .. 377 427 .. 374 434 .. 0.86 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 3.6e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAviea 54 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172339_2 377 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRA 427 68*******99999******766766.557778999**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 8927.95 // Query: T172339_3 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 9278.06 // Query: T176624_1 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3894.23 // Query: T176624_2 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 3975.36 // Query: T176624_3 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-06 28.1 28.1 0.00085 19.8 5.5 3.7 3 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 2.2 8.5e-06 0.14 9 58 .. 112 167 .. 107 189 .. 0.78 2 ! 6.6 4.8 0.00069 11 4 74 .. 208 284 .. 206 286 .. 0.73 3 ! 19.8 5.5 5.2e-08 0.00085 1 55 [. 305 359 .. 305 390 .. 0.90 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 8.5e-06 TTBCCCC.........EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCCCCC CS UPAR_LY6 9 sesClpe.........veCpeadsvCvsatlklqagnlettlvvkgCaresscrlladf 58 ++C+ + ++C+ +++ Cv+ + g+ + kgCa+ + c+l ++ T176624_3 112 AQHCEMSllfqe*vgsMNCTGKQTACVTLHGTWSRGG---PQILKGCATPEVCNLHENA 167 67888888888888889**************999665...99***********544433 PP == domain 2 score: 6.6 bits; conditional E-value: 0.00069 EEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTTEEE.EEEEEEEESCCGG......CCCCCCSTSECEEEEEEEESST CS UPAR_LY6 4 Clge.ssesClpeveCpeadsvCvsatlklqagnlet.tlvvkgCaressc......rlladfinigsikvsesccqsd 74 C +sC p Cpe++++C++ + g+ + + + C++++ c + l +++ + v+++ccq++ T176624_3 208 CFTC*DLHSCGPL-PCPEDNHYCLQMAGITGFGEGNPvSWRNGFCVTSKDCkfgnsiYALTYGVGF-GFCVNTTCCQGN 284 5555567899999.***********9998888885550555556*******998844334444433.467899***975 PP == domain 3 score: 19.8 bits; conditional E-value: 5.2e-08 EEEEEEBTTTBCCCC..EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCC CS UPAR_LY6 1 CysClgessesClpe..veCpeadsvCvsatlklqagnlettlvvkgCaresscrll 55 C++C g e C+++ ++Cp ++s Cv+ l+ ++g+ +++ v+gC c+ l T176624_3 305 CPTCPGSYLEPCNSSfyMQCPSGESECVQLDLTSEEGG--RNVNVRGCGSRDLCSAL 359 *************************************9..88999***999999544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3735.91 // Query: T249044_1 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2998.15 // Query: T249044_2 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 3059.34 // Query: T249044_3 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.0 0.1 0.022 14.2 0.1 1.3 1 DUF4417 Domain of unknown function (DUF4417) 1.2 9.5 6.4 1.9 8.8 0.0 3.1 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.1 2.7e-06 0.022 52 111 .. 232 296 .. 216 299 .. 0.80 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.7e-06 DUF4417 52 rlwn.....sPekylaaLkqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +wn + +++l + ++ +++ Pdf ly+ a + +w y++r i ++ ++ ++ P++ T249044_3 232 LIWNqkracTAKTILRQENNAGGIMLPDFKLYYKATVTKTAWYWYQNRDINQWNRTEASEITPHI 296 56664444444555555566699*********************************999999998 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 1.1 0.68 5.5e+03 11 23 .. 271 283 .. 263 291 .. 0.77 2 ? 8.8 0.0 0.00024 1.9 3 30 .. 338 365 .. 336 372 .. 0.89 3 ? 2.9 0.2 0.017 1.4e+02 23 42 .. 434 453 .. 416 463 .. 0.81 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.68 YlbE 11 pyWYrkLnRnpee 23 +WY + nR+ ++ T249044_3 271 TAWYWYQNRDINQ 283 5789888887665 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00024 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W + Ln +p+ +k+le++ T249044_3 338 LTPYTKINSRWIKDLNVRPKTIKTLEEN 365 6779999******************987 PP == domain 3 score: 2.9 bits; conditional E-value: 0.017 YlbE 23 elkelekemkekYkktipdk 42 ++ + ke k+ Ykk+i++ T249044_3 434 LISRIYKELKQIYKKKIKQP 453 5788999*********9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 548 (0.0336073); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 2417.86 // Query: T323218_1 [L=2809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-55 184.4 599.1 1.8e-15 56.7 9.2 52.9 47 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 1.0 0.00031 5 4 24 .. 177 197 .. 176 214 .. 0.89 2 ? -0.9 15.6 0.11 1.8e+03 7 36 .. 254 282 .. 227 285 .. 0.74 3 ! 22.5 3.9 5.3e-09 8.6e-05 1 31 [. 280 309 .. 280 322 .. 0.88 4 ! 15.7 2.8 7.1e-07 0.012 1 35 [. 323 356 .. 323 365 .. 0.90 5 ! 43.6 11.0 1.4e-15 2.4e-11 1 50 [] 367 415 .. 367 415 .. 0.99 6 ! 22.6 0.8 4.9e-09 8e-05 28 50 .] 414 436 .. 413 436 .. 0.97 7 ? -2.0 1.0 0.24 4e+03 1 14 [. 441 466 .. 438 483 .. 0.59 8 ! 8.7 1.6 0.00011 1.8 20 41 .. 512 538 .. 488 541 .. 0.79 9 ? 0.3 3.4 0.047 7.7e+02 5 26 .. 542 562 .. 542 563 .. 0.94 10 ! 16.4 1.7 4.2e-07 0.0069 2 36 .. 601 634 .. 601 634 .. 0.98 11 ? -3.6 16.5 0.77 1.2e+04 1 39 [. 632 694 .. 632 703 .. 0.63 12 ? 1.7 7.6 0.017 2.7e+02 1 50 [] 684 744 .. 684 744 .. 0.78 13 ! 3.3 0.4 0.0054 89 16 37 .. 743 764 .. 741 774 .. 0.82 14 ! 3.1 13.2 0.0062 1e+02 2 33 .. 780 842 .. 780 842 .. 0.85 15 ! 24.1 3.3 1.7e-09 2.8e-05 2 35 .. 844 876 .. 844 880 .. 0.93 16 ! 4.3 0.8 0.0026 43 28 49 .. 890 911 .. 883 911 .. 0.88 17 ! 12.5 6.4 7e-06 0.11 10 48 .. 915 962 .. 913 963 .. 0.97 18 ! 3.3 6.8 0.0053 87 3 29 .. 1002 1028 .. 963 1031 .. 0.92 19 ! 12.9 2.6 5.2e-06 0.085 1 30 [. 1032 1060 .. 1032 1064 .. 0.96 20 ? 0.3 4.6 0.047 7.7e+02 18 50 .] 1067 1103 .. 1063 1103 .. 0.80 21 ! 9.2 3.3 7.8e-05 1.3 8 43 .. 1104 1138 .. 1103 1143 .. 0.89 22 ! 20.0 15.7 3.2e-08 0.00052 2 49 .. 1151 1197 .. 1150 1198 .. 0.94 23 ? -2.1 0.0 0.27 4.4e+03 7 15 .. 1198 1205 .. 1197 1210 .. 0.81 24 ! 9.6 0.6 5.6e-05 0.91 1 15 [. 1213 1226 .. 1213 1233 .. 0.82 25 ! 20.5 14.2 2.4e-08 0.00039 1 39 [. 1234 1284 .. 1234 1287 .. 0.93 26 ! 24.1 24.8 1.7e-09 2.8e-05 1 50 [] 1288 1371 .. 1288 1371 .. 0.95 27 ! 8.2 7.5 0.00016 2.6 29 50 .] 1371 1392 .. 1369 1392 .. 0.96 28 ! 20.7 2.9 2e-08 0.00032 17 50 .] 1392 1425 .. 1392 1425 .. 0.96 29 ! 56.7 9.2 1.1e-19 1.8e-15 1 50 [] 1430 1477 .. 1430 1477 .. 0.99 30 ? -3.3 8.2 0.63 1e+04 5 50 .] 1478 1534 .. 1478 1534 .. 0.71 31 ? -0.1 15.2 0.064 1e+03 5 50 .] 1511 1568 .. 1507 1568 .. 0.78 32 ? -3.9 1.0 0.97 1.6e+04 6 23 .. 1605 1641 .. 1604 1662 .. 0.64 33 ? -2.9 0.6 0.46 7.5e+03 4 11 .. 1680 1687 .. 1680 1702 .. 0.80 34 ! 5.8 3.7 0.00088 14 18 38 .. 1823 1843 .. 1799 1857 .. 0.84 35 ! 15.6 2.3 7.7e-07 0.013 1 26 [. 1872 1896 .. 1872 1898 .. 0.95 36 ? -6.8 12.0 1 1.6e+04 1 48 [. 1905 1974 .. 1905 1983 .. 0.61 37 ! 3.9 13.9 0.0035 56 2 41 .. 1982 2018 .. 1981 2026 .. 0.72 38 ? -2.1 0.4 0.26 4.2e+03 5 39 .. 2041 2089 .. 2041 2096 .. 0.72 39 ? -2.7 0.1 0.4 6.5e+03 30 44 .. 2107 2121 .. 2105 2127 .. 0.81 40 ? -3.8 0.6 0.88 1.4e+04 6 22 .. 2233 2262 .. 2232 2271 .. 0.67 41 ? -2.2 0.1 0.29 4.7e+03 31 46 .. 2375 2394 .. 2362 2395 .. 0.77 42 ? -0.5 9.5 0.082 1.3e+03 19 39 .. 2462 2483 .. 2449 2495 .. 0.69 43 ! 7.2 3.9 0.00032 5.2 1 25 [. 2510 2533 .. 2510 2536 .. 0.94 44 ! 12.2 0.4 8.7e-06 0.14 2 15 .. 2544 2556 .. 2544 2563 .. 0.82 45 ! 12.4 19.1 7.6e-06 0.12 1 37 [. 2564 2643 .. 2564 2646 .. 0.98 46 ! 2.6 14.1 0.009 1.5e+02 1 46 [. 2640 2685 .. 2640 2686 .. 0.57 47 ! 14.2 3.6 2.1e-06 0.034 16 39 .. 2699 2722 .. 2697 2737 .. 0.87 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00031 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323218_1 177 APTSRQPLQAQNFLQSASTDQ 197 9********999999987655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323218_1 254 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 282 345555.**********************9 PP == domain 3 score: 22.5 bits; conditional E-value: 5.3e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323218_1 280 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 309 9***********.*****************9 PP == domain 4 score: 15.7 bits; conditional E-value: 7.1e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323218_1 323 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 356 57*******9996..7*******************9 PP == domain 5 score: 43.6 bits; conditional E-value: 1.4e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323218_1 367 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 415 8***********.************************************9 PP == domain 6 score: 22.6 bits; conditional E-value: 4.9e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323218_1 414 CLLVAYEGPKSPQVDLSRPSSCL 436 9*********************9 PP == domain 7 score: -2.0 bits; conditional E-value: 0.24 DUF4705 1 PgpAPasrrpLqa............p 14 +gp as+ Lqa + T323218_1 441 TGPTSASWGLLQAqlflwaestgttA 466 56666666666653333333333333 PP == domain 8 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323218_1 512 NSLCRPCSCLPGASPGPALaswrlPQA 538 5799*************9965555555 PP == domain 9 score: 0.3 bits; conditional E-value: 0.047 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323218_1 542 PACQQPQQ-AQLFPHSGPFRPN 562 9*******.*********9996 PP == domain 10 score: 16.4 bits; conditional E-value: 4.2e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323218_1 601 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 634 59*********.**********************9 PP == domain 11 score: -3.6 bits; conditional E-value: 0.77 DUF4705 1 PgpAPasrrpL.qa....................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + l + s ++a +p As Gp++ p T323218_1 632 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaQNVLNS--ASPGRAHPPSASTGPSPasqqpP 694 8*********995445666777777777765442223333..35555677777777777655544 PP == domain 12 score: 1.7 bits; conditional E-value: 0.017 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323218_1 684 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 744 789999999646557888895555444455679***********99999999999999887 PP == domain 13 score: 3.3 bits; conditional E-value: 0.0054 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323218_1 743 SLPHSILRKLSICLTVASPGHE 764 67888888889*********87 PP == domain 14 score: 3.1 bits; conditional E-value: 0.0062 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323218_1 780 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 842 9**********9999999999999999999998888888888888888888888888888776 PP == domain 15 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323218_1 844 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 876 89*********.*******************985 PP == domain 16 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323218_1 890 FLQSASPGQALPPKGFCRPKSS 911 6888***************997 PP == domain 17 score: 12.5 bits; conditional E-value: 7e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323218_1 915 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 962 9*********************************************98 PP == domain 18 score: 3.3 bits; conditional E-value: 0.0053 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323218_1 1002 PALVCKWPLQEQNCLKSASPGPASCFP 1028 999999***999999999999988776 PP == domain 19 score: 12.9 bits; conditional E-value: 5.2e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323218_1 1032 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 1060 8***********.****************9 PP == domain 20 score: 0.3 bits; conditional E-value: 0.047 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323218_1 1067 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 1103 567777788888888866567799999*********8 PP == domain 21 score: 9.2 bits; conditional E-value: 7.8e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323218_1 1104 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1138 57777.999*********************998877 PP == domain 22 score: 20.0 bits; conditional E-value: 3.2e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323218_1 1151 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1197 9********995..4689999**************************97 PP == domain 23 score: -2.1 bits; conditional E-value: 0.27 DUF4705 7 srrpLqapa 15 srrpLq ++ T323218_1 1198 SRRPLQ-AQ 1205 89****.66 PP == domain 24 score: 9.6 bits; conditional E-value: 5.6e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323218_1 1213 PGPAPASRCPLQA-Q 1226 9***********4.4 PP == domain 25 score: 20.5 bits; conditional E-value: 2.4e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323218_1 1234 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1284 9*******************************9.89**********876666 PP == domain 26 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323218_1 1288 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1371 8*********************************************6515699*****************************98 PP == domain 27 score: 8.2 bits; conditional E-value: 0.00016 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323218_1 1371 LPASSPGPALPPGCVSRPDCCL 1392 9********************9 PP == domain 28 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323218_1 1392 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1425 6889****************************87 PP == domain 29 score: 56.7 bits; conditional E-value: 1.1e-19 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323218_1 1430 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1477 9*********************************************..97 PP == domain 30 score: -3.3 bits; conditional E-value: 0.63 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323218_1 1478 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1534 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 31 score: -0.1 bits; conditional E-value: 0.064 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323218_1 1511 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1568 599*****888888888876665555556677889999999888886799999*9998 PP == domain 32 score: -3.9 bits; conditional E-value: 0.97 DUF4705 6 asrrpLqa...................paslqasgls 23 as+rpL p++l +g s T323218_1 1605 ASHRPLPC*ersa*apcltlaprltlaPPTLTKVGVS 1641 6677775566666665555555555567777777766 PP == domain 33 score: -2.9 bits; conditional E-value: 0.46 DUF4705 4 APasrrpL 11 A as++pL T323218_1 1680 ALASHWPL 1687 89*****9 PP == domain 34 score: 5.8 bits; conditional E-value: 0.00088 DUF4705 18 qasglsrpsaqLpvAsaGpkl 38 +++++ r+ ++Lp+As+Gp+ T323218_1 1823 ASRRPLRAQLFLPAASPGPTA 1843 578899999999999999986 PP == domain 35 score: 15.6 bits; conditional E-value: 7.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323218_1 1872 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1896 9***********.9***********7 PP == domain 36 score: -6.8 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslq.......asglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as r pLqa pas+q s++ +++ p ++ + l p +gL rPss T323218_1 1905 PRPAWAS-R*PLQAqvvlksaspgPASQQvsklfwlNSCPAPSRLCRPRTFSSQALrarllPLGGLYRPSS 1974 7788887.666888888888888877777222222223444444455555556655666667777777776 PP == domain 37 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 g+A as+rpLq +++ +++ p+a +As+ p ++p+ T323218_1 1982 GSALASQRPLQ-AQLSPPR--RPPGAKSLPASRQPACSPV 2018 89*********.6666666..4566666667777777665 PP == domain 38 score: -2.1 bits; conditional E-value: 0.26 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323218_1 2041 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 2089 7788866657777787888888999999999843777777777776555 PP == domain 39 score: -2.7 bits; conditional E-value: 0.4 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323218_1 2107 CLAPAPPTLREVGVS 2121 579999999999865 PP == domain 40 score: -3.8 bits; conditional E-value: 0.88 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323218_1 2233 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 2262 788888666667776666666666666555 PP == domain 41 score: -2.2 bits; conditional E-value: 0.29 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323218_1 2375 EATVGPADalllPELGLYRP 2394 58888876667799999999 PP == domain 42 score: -0.5 bits; conditional E-value: 0.082 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323218_1 2462 SRRPLRAQLFLPAASLGPTPaS 2483 6777788888888888887752 PP == domain 43 score: 7.2 bits; conditional E-value: 0.00032 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323218_1 2510 PGPGQASRWPRQ-AQLLPSDGISRS 2533 9***********.********9985 PP == domain 44 score: 12.2 bits; conditional E-value: 8.7e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323218_1 2544 GPAWASRRPLQA-Q 2556 9**********4.4 PP == domain 45 score: 12.4 bits; conditional E-value: 7.6e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323218_1 2564 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 2643 9***************************************************************.***************7 PP == domain 46 score: 2.6 bits; conditional E-value: 0.009 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323218_1 2640 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 2685 9***********44444444444444444444444444444.....................44444 PP == domain 47 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpklp 39 +l+ +++rps++LpvAs Gp + T323218_1 2699 LLPFGRFGRPSSCLPVASLGPAHS 2722 578889***************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.69 # Mc/sec: 11646.48 // Query: T323218_2 [L=2809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-44 149.9 580.7 2.4e-08 33.9 7.0 48.8 46 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.1 0.22 3.6e+03 38 47 .. 178 187 .. 177 191 .. 0.81 2 ? 0.0 2.6 0.057 9.4e+02 7 45 .. 190 232 .. 185 232 .. 0.77 3 ! 33.9 7.0 1.4e-12 2.4e-08 3 49 .. 218 263 .. 216 264 .. 0.96 4 ! 30.5 7.0 1.7e-11 2.8e-07 1 38 [. 269 305 .. 269 315 .. 0.93 5 ! 23.6 4.6 2.4e-09 4e-05 5 38 .. 316 348 .. 310 357 .. 0.92 6 ! 22.6 6.2 5e-09 8.1e-05 5 38 .. 360 392 .. 359 395 .. 0.95 7 ! 10.3 3.2 3.4e-05 0.56 1 34 [. 388 416 .. 388 427 .. 0.77 8 ! 22.2 16.3 6.9e-09 0.00011 1 49 [. 430 477 .. 430 478 .. 0.99 9 ! 8.6 1.7 0.00012 1.9 8 40 .. 491 522 .. 489 525 .. 0.84 10 ! 10.6 12.6 2.8e-05 0.45 2 34 .. 516 547 .. 515 575 .. 0.59 11 ! 12.6 0.5 6.8e-06 0.11 16 35 .. 603 622 .. 596 623 .. 0.92 12 ! 30.9 8.9 1.3e-11 2.1e-07 2 50 .] 622 669 .. 621 669 .. 0.97 13 ? -2.1 0.1 0.26 4.2e+03 9 25 .. 671 696 .. 670 699 .. 0.56 14 ? -0.4 2.6 0.076 1.2e+03 1 33 [. 717 749 .. 717 751 .. 0.91 15 ! 14.6 6.5 1.6e-06 0.026 4 44 .. 753 810 .. 753 816 .. 0.97 16 ! 9.4 0.1 6.6e-05 1.1 14 37 .. 844 867 .. 835 872 .. 0.88 17 ! 23.6 2.8 2.4e-09 3.9e-05 18 50 .] 890 922 .. 868 922 .. 0.83 18 ! 4.4 0.7 0.0024 40 28 47 .. 952 971 .. 944 974 .. 0.85 19 ? 1.2 1.3 0.025 4.1e+02 7 27 .. 974 993 .. 972 1000 .. 0.90 20 ? -0.8 0.1 0.1 1.7e+03 7 24 .. 995 1011 .. 993 1015 .. 0.87 21 ! 9.4 8.9 6.7e-05 1.1 6 38 .. 1015 1057 .. 1011 1063 .. 0.89 22 ! 9.9 6.3 4.6e-05 0.74 1 33 [. 1065 1096 .. 1065 1096 .. 0.95 23 ! 3.2 2.7 0.0058 94 19 43 .. 1103 1128 .. 1100 1130 .. 0.80 24 ! 15.3 12.6 9.9e-07 0.016 1 38 [. 1118 1175 .. 1118 1181 .. 0.87 25 ? 2.0 13.7 0.014 2.2e+02 1 49 [. 1171 1228 .. 1171 1229 .. 0.95 26 ? -1.1 8.2 0.13 2.1e+03 7 41 .. 1250 1282 .. 1248 1282 .. 0.86 27 ! 8.5 17.1 0.00013 2.1 3 36 .. 1279 1334 .. 1277 1339 .. 0.95 28 ? 2.1 0.1 0.013 2.2e+02 27 39 .. 1337 1349 .. 1336 1353 .. 0.86 29 ! 6.0 11.1 0.00077 13 1 38 [. 1344 1390 .. 1344 1400 .. 0.85 30 ! 15.6 2.3 7.7e-07 0.013 1 26 [. 1419 1443 .. 1419 1445 .. 0.95 31 ? -1.9 4.4 0.22 3.7e+03 1 29 [. 1452 1490 .. 1452 1495 .. 0.77 32 ? 0.6 8.2 0.038 6.2e+02 7 46 .. 1502 1545 .. 1497 1547 .. 0.83 33 ? -4.2 4.6 1 1.6e+04 10 39 .. 1537 1563 .. 1536 1577 .. 0.54 34 ? -3.9 2.7 0.98 1.6e+04 7 14 .. 1622 1647 .. 1616 1680 .. 0.56 35 ? 2.0 20.9 0.013 2.2e+02 10 42 .. 1837 1901 .. 1807 1920 .. 0.71 36 ! 32.9 4.4 3.1e-12 5e-08 19 50 .] 1934 1965 .. 1923 1965 .. 0.95 37 ! 14.7 21.3 1.5e-06 0.025 1 50 [] 1970 2031 .. 1970 2031 .. 0.88 38 ? -3.4 0.3 0.69 1.1e+04 6 23 .. 2058 2088 .. 2055 2091 .. 0.70 39 ? -5.9 4.3 1 1.6e+04 6 42 .. 2107 2146 .. 2105 2151 .. 0.54 40 ? -2.5 0.8 0.36 5.8e+03 6 23 .. 2200 2230 .. 2188 2254 .. 0.62 41 ? -6.7 5.4 1 1.6e+04 6 38 .. 2249 2300 .. 2245 2318 .. 0.46 42 ? 2.4 0.9 0.011 1.7e+02 8 27 .. 2452 2470 .. 2449 2472 .. 0.87 43 ! 10.9 10.6 2.3e-05 0.38 14 48 .. 2511 2557 .. 2506 2558 .. 0.74 44 ? -6.1 12.1 1 1.6e+04 9 45 .. 2561 2606 .. 2560 2611 .. 0.62 45 ? -14.0 23.0 1 1.6e+04 7 46 .. 2611 2663 .. 2609 2701 .. 0.78 46 ! 22.2 3.2 6.7e-09 0.00011 2 36 .. 2707 2740 .. 2706 2747 .. 0.91 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.22 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323218_2 178 LPPGSLSRPR 187 6889999985 PP == domain 2 score: 0.0 bits; conditional E-value: 0.057 DUF4705 7 srrpLqapaslqasglsrpsaqLpv.....AsaGpklppagLsr 45 s +p q + ++ ++gl rp+ L++ A+a +++p+a L r T323218_2 190 SSQPPQ-TKLMTHNGLFRPIPYLTAvsadeATASQQPPQAQLHR 232 567788.999**************94444455556668888876 PP == domain 3 score: 33.9 bits; conditional E-value: 1.4e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323218_2 218 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 263 689*******.************************************ PP == domain 4 score: 30.5 bits; conditional E-value: 1.7e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323218_2 269 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 305 9***********.***********************86 PP == domain 5 score: 23.6 bits; conditional E-value: 2.4e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323218_2 316 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 348 899*****.***********************98 PP == domain 6 score: 22.6 bits; conditional E-value: 5e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323218_2 360 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 392 9*******.***********************87 PP == domain 7 score: 10.3 bits; conditional E-value: 3.4e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323218_2 388 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 416 9***********5444.....4446888888887 PP == domain 8 score: 22.2 bits; conditional E-value: 6.9e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323218_2 430 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 477 9***********.************************************ PP == domain 9 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323218_2 491 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 522 57799..889999****************99544 PP == domain 10 score: 10.6 bits; conditional E-value: 2.8e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323218_2 516 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 547 9**********.666666666666666666553 PP == domain 11 score: 12.6 bits; conditional E-value: 6.8e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323218_2 603 PLPHSGPSRPRWCLTVASSG 622 69****************98 PP == domain 12 score: 30.9 bits; conditional E-value: 1.3e-11 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323218_2 622 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 669 89*********.*********************************9887 PP == domain 13 score: -2.1 bits; conditional E-value: 0.26 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323218_2 671 RRLQDelilpvrlqARLLPHNNLLWS 696 56666666633333666666666555 PP == domain 14 score: -0.4 bits; conditional E-value: 0.076 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323218_2 717 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 749 89999*******888999999999999999988 PP == domain 15 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323218_2 753 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 810 88******************************************************97 PP == domain 16 score: 9.4 bits; conditional E-value: 6.6e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323218_2 844 AKLLPFGSLYRPSSCLAIAFVGQD 867 67899999**************95 PP == domain 17 score: 23.6 bits; conditional E-value: 2.4e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323218_2 890 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 922 455566899***********************9 PP == domain 18 score: 4.4 bits; conditional E-value: 0.0024 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323218_2 952 LLQLASPDQALPPSGLYRPK 971 6889***************6 PP == domain 19 score: 1.2 bits; conditional E-value: 0.025 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323218_2 974 SSQPLQ-GQLLATGGFCRPKS 993 689***.***********976 PP == domain 20 score: -0.8 bits; conditional E-value: 0.1 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323218_2 995 SSQPLH-TQLLSVSGLCR 1011 78****.*****999876 PP == domain 21 score: 9.4 bits; conditional E-value: 6.7e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323218_2 1015 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 1057 788999999999999999********************99888 PP == domain 22 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323218_2 1065 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 1096 8***********.*****9999999******98 PP == domain 23 score: 3.2 bits; conditional E-value: 0.0058 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323218_2 1103 SRGLNGPSPCLSAASTGPAStSQWAL 1128 789999999*****999976566555 PP == domain 24 score: 15.3 bits; conditional E-value: 9.9e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323218_2 1118 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1175 688888888888888888888888888888888**********************876 PP == domain 25 score: 2.0 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323218_2 1171 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1228 89999999*************9899******************************997 PP == domain 26 score: -1.1 bits; conditional E-value: 0.13 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323218_2 1250 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 1282 679***77789********8..8889999999886 PP == domain 27 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 3 pAPasrrpLqa......................paslqasglsrpsaqLpvAsaGp 36 + Pasrrp qa p +l+ +++rps++LpvAs Gp T323218_2 1279 RPPASRRPAQAqpqphsglstps*lsphcglpsPKLLPLGRFGRPSSRLPVASSGP 1334 66*****************************************************9 PP == domain 28 score: 2.1 bits; conditional E-value: 0.013 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323218_2 1337 SFLTTAFPGPVFP 1349 79*********97 PP == domain 29 score: 6.0 bits; conditional E-value: 0.00077 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323218_2 1344 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1390 7888889**************766651678***************86 PP == domain 30 score: 15.6 bits; conditional E-value: 7.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323218_2 1419 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1443 9***********.9***********7 PP == domain 31 score: -1.9 bits; conditional E-value: 0.22 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323218_2 1452 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1490 8899998.77799988888888888888877776666666 PP == domain 32 score: 0.6 bits; conditional E-value: 0.038 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323218_2 1502 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1545 567799.9**********************997776446666655 PP == domain 33 score: -4.2 bits; conditional E-value: 1 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323218_2 1537 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1563 899.4444554..33444444444444442 PP == domain 34 score: -3.9 bits; conditional E-value: 0.98 DUF4705 7 srrpLqa..................p 14 s++pL + T323218_2 1622 SHWPLAShwplpr*qrsv*apcltlA 1647 55555334444445555555555552 PP == domain 35 score: 2.0 bits; conditional E-value: 0.013 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323218_2 1837 RLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 1901 45556666666666666666666666666666665577779********************5543 PP == domain 36 score: 32.9 bits; conditional E-value: 3.1e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323218_2 1934 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1965 589****************************9 PP == domain 37 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++glsrps+++ +Gp++ p +gL+ P CL T323218_2 1970 TGPALAVEQPLQ-APLLPPRGLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNACL 2031 8***********.************************99988887777777777777777776 PP == domain 38 score: -3.4 bits; conditional E-value: 0.69 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323218_2 2058 ASHRPLPC*ersa*apclapaPAMLREVGVS 2088 7888886677777766666667777776655 PP == domain 39 score: -5.9 bits; conditional E-value: 1 DUF4705 6 asrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL ++ l p + + +++a+p+l ++g T323218_2 2107 ASHRPLPR*erla*APCLTLA---PPTLTPCLTPAPPTLTEVG 2146 566666555555553333322...5555566666666666655 PP == domain 40 score: -2.5 bits; conditional E-value: 0.36 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323218_2 2200 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 2230 4555554477777777777777777666665 PP == domain 41 score: -6.7 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasglsrpsaqLpvAsaGpkl 38 as+rpL p++l + ++ a+p+l T323218_2 2249 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPC----------LTAAPPTL 2300 56666655555666555555555555555633333333333332..........22222222 PP == domain 42 score: 2.4 bits; conditional E-value: 0.011 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323218_2 2452 ARPLQ-THLQPPGVLSGPSS 2470 69***.99999999999987 PP == domain 43 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323218_2 2511 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 2557 555699*******************6666666666666666666666 PP == domain 44 score: -6.1 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323218_2 2561 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 2606 7888.666666654122222277778886577888865558888888 PP == domain 45 score: -14.0 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323218_2 2611 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 2663 56888887777633333333667888888888888888888888888888888 PP == domain 46 score: 22.2 bits; conditional E-value: 6.7e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323218_2 2707 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 2740 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:00.65 # Mc/sec: 12363.19 // Query: T323218_3 [L=2808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-105 343.2 606.3 4.9e-17 61.7 8.0 54.3 51 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 2.2 1.8e-07 0.0029 29 48 .. 179 198 .. 172 198 .. 0.95 2 ! 10.6 4.2 2.8e-05 0.45 2 43 .. 206 247 .. 206 251 .. 0.90 3 ! 25.3 6.2 7.3e-10 1.2e-05 1 36 [. 258 292 .. 258 294 .. 0.94 4 ! 7.4 15.1 0.00029 4.6 3 50 .] 292 360 .. 290 376 .. 0.85 5 ! 11.6 2.7 1.3e-05 0.22 3 26 .. 379 401 .. 378 408 .. 0.91 6 ! 14.3 4.9 1.9e-06 0.032 10 39 .. 428 456 .. 428 458 .. 0.96 7 ! 19.3 0.3 5.3e-08 0.00086 22 47 .. 472 497 .. 465 499 .. 0.91 8 ! 20.3 6.1 2.7e-08 0.00044 8 37 .. 511 539 .. 504 541 .. 0.90 9 ! 3.1 0.7 0.0061 1e+02 24 39 .. 538 553 .. 537 555 .. 0.85 10 ! 9.0 5.3 8.7e-05 1.4 2 45 .. 611 653 .. 569 655 .. 0.90 11 ? 0.5 1.6 0.04 6.6e+02 19 39 .. 648 668 .. 646 679 .. 0.87 12 ! 6.0 3.8 0.00076 12 19 49 .. 679 711 .. 675 711 .. 0.87 13 ! 5.4 10.2 0.0012 20 5 49 .. 743 783 .. 715 783 .. 0.94 14 ! 4.0 0.9 0.0032 52 1 19 [. 789 806 .. 789 809 .. 0.91 15 ! 16.8 9.3 3.2e-07 0.0053 1 40 [. 810 860 .. 810 863 .. 0.94 16 ! 3.0 2.6 0.0067 1.1e+02 30 49 .. 881 900 .. 876 901 .. 0.79 17 ? -2.5 0.1 0.36 5.8e+03 24 33 .. 913 922 .. 903 923 .. 0.64 18 ! 17.9 0.3 1.5e-07 0.0024 23 48 .. 957 982 .. 951 982 .. 0.89 19 ! 23.6 0.9 2.5e-09 4e-05 29 50 .] 984 1005 .. 984 1005 .. 0.99 20 ! 11.7 0.4 1.3e-05 0.21 31 47 .. 1007 1023 .. 1007 1025 .. 0.95 21 ! 3.5 0.7 0.0046 75 17 39 .. 1025 1047 .. 1023 1051 .. 0.87 22 ! 8.1 2.1 0.00017 2.7 4 30 .. 1057 1082 .. 1055 1085 .. 0.89 23 ! 6.2 0.5 0.00068 11 3 18 .. 1088 1102 .. 1087 1106 .. 0.87 24 ! 21.6 14.8 1e-08 0.00016 1 50 [] 1107 1155 .. 1107 1155 .. 0.91 25 ! 7.0 3.3 0.00038 6.2 21 38 .. 1147 1164 .. 1136 1171 .. 0.83 26 ! 24.7 7.6 1.1e-09 1.8e-05 2 50 .] 1161 1218 .. 1160 1218 .. 0.82 27 ! 27.0 7.1 2.1e-10 3.5e-06 20 50 .] 1209 1239 .. 1208 1239 .. 0.96 28 ! 15.4 9.8 9.2e-07 0.015 15 49 .. 1225 1259 .. 1223 1261 .. 0.91 29 ! 2.5 12.0 0.0098 1.6e+02 17 50 .] 1248 1293 .. 1246 1293 .. 0.81 30 ? 1.6 4.9 0.018 3e+02 14 38 .. 1278 1302 .. 1277 1316 .. 0.79 31 ? 1.2 32.3 0.025 4.1e+02 2 42 .. 1322 1448 .. 1321 1467 .. 0.91 32 ! 32.9 4.4 3.1e-12 5e-08 19 50 .] 1481 1512 .. 1470 1512 .. 0.95 33 ! 17.5 17.1 1.9e-07 0.0032 1 50 [] 1517 1578 .. 1517 1578 .. 0.96 34 ? -3.7 1.1 0.82 1.3e+04 11 11 .. 1654 1654 .. 1642 1687 .. 0.47 35 ! 16.0 11.9 6e-07 0.0097 18 50 .] 1812 1844 .. 1797 1844 .. 0.88 36 ! 20.8 2.8 1.8e-08 0.0003 17 50 .] 1844 1877 .. 1844 1877 .. 0.96 37 ! 56.7 9.2 1.1e-19 1.8e-15 1 50 [] 1882 1929 .. 1882 1929 .. 0.99 38 ? -6.9 20.3 1 1.6e+04 5 50 .] 1963 2020 .. 1930 2020 .. 0.85 39 ? -0.3 0.5 0.073 1.2e+03 29 44 .. 2089 2104 .. 2088 2111 .. 0.88 40 ? -3.8 2.9 0.86 1.4e+04 13 42 .. 2130 2184 .. 2119 2187 .. 0.58 41 ? -2.9 0.6 0.47 7.7e+03 6 23 .. 2216 2246 .. 2215 2269 .. 0.68 42 ? -1.5 0.1 0.17 2.8e+03 6 13 .. 2265 2272 .. 2261 2287 .. 0.74 43 ? -3.8 0.1 0.91 1.5e+04 4 11 .. 2317 2324 .. 2317 2338 .. 0.86 44 ! 12.9 9.7 5.4e-06 0.088 17 50 .] 2449 2482 .. 2427 2482 .. 0.85 45 ! 27.1 3.3 2e-10 3.2e-06 17 50 .] 2482 2515 .. 2481 2515 .. 0.96 46 ! 61.7 8.0 3e-21 4.9e-17 1 50 [] 2520 2569 .. 2520 2569 .. 0.99 47 ! 11.7 0.9 1.3e-05 0.21 25 44 .. 2565 2584 .. 2564 2585 .. 0.91 48 ! 10.2 5.4 3.7e-05 0.6 24 49 .. 2596 2620 .. 2590 2622 .. 0.77 49 ! 3.5 1.5 0.0048 78 26 39 .. 2619 2634 .. 2619 2643 .. 0.72 50 ? 1.9 0.7 0.014 2.4e+02 29 50 .] 2645 2667 .. 2645 2667 .. 0.86 51 ! 21.5 13.0 1.1e-08 0.00019 1 39 [. 2672 2732 .. 2672 2739 .. 0.95 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 1.8e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323218_3 179 LPAASPGPELSPVSLHRPSS 198 9*****************98 PP == domain 2 score: 10.6 bits; conditional E-value: 2.8e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323218_3 206 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 247 788********.***********************99765555 PP == domain 3 score: 25.3 bits; conditional E-value: 7.3e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323218_3 258 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 292 9***********.*******************9755 PP == domain 4 score: 7.4 bits; conditional E-value: 0.00029 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323218_3 292 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 360 5569****************************************9999999999999555566666665 PP == domain 5 score: 11.6 bits; conditional E-value: 1.3e-05 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323218_3 379 PALASRWPLQ-AQLLSQDVISRPK 401 9*********.******9999995 PP == domain 6 score: 14.3 bits; conditional E-value: 1.9e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323218_3 428 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 456 9**.************************98 PP == domain 7 score: 19.3 bits; conditional E-value: 5.3e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323218_3 472 FGPVPVQLTATNVGPKLPQVKLSRPA 497 78889********************5 PP == domain 8 score: 20.3 bits; conditional E-value: 2.7e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323218_3 511 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 539 69***.**********************96 PP == domain 9 score: 3.1 bits; conditional E-value: 0.0061 DUF4705 24 rpsaqLpvAsaGpklp 39 + sa+Lp+As G lp T323218_3 538 QVSACLPAASTGTALP 553 569*********9987 PP == domain 10 score: 9.0 bits; conditional E-value: 8.7e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323218_3 611 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 653 55557888999.***********************998887776 PP == domain 11 score: 0.5 bits; conditional E-value: 0.04 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323218_3 648 PRRLFQAQLLPFAACPGPECP 668 788999**************6 PP == domain 12 score: 6.0 bits; conditional E-value: 0.00076 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323218_3 679 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 711 78999***************65557999*9997 PP == domain 13 score: 5.4 bits; conditional E-value: 0.0012 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323218_3 743 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 783 89999999.9***************97...5778999******** PP == domain 14 score: 4.0 bits; conditional E-value: 0.0032 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323218_3 789 PGTALASWQALQ-AQILQK 806 9***********.999885 PP == domain 15 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323218_3 810 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 860 889*******************************************98555 PP == domain 16 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323218_3 881 LTHTPVPKLPPVSQSRPSSS 900 5556779***********97 PP == domain 17 score: -2.5 bits; conditional E-value: 0.36 DUF4705 24 rpsaqLpvAs 33 +psa++ +As T323218_3 913 SPSAGPAPAS 922 5666666655 PP == domain 18 score: 17.9 bits; conditional E-value: 1.5e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323218_3 957 LQTKLSLPVASTGQNCPQVSLSRANS 982 678899*****************976 PP == domain 19 score: 23.6 bits; conditional E-value: 2.5e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323218_3 984 LPVASAGQNRPQVSLFTPSSCL 1005 8********************9 PP == domain 20 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323218_3 1007 VASAGAKLPQVGLSRPS 1023 8***************6 PP == domain 21 score: 3.5 bits; conditional E-value: 0.0046 DUF4705 17 lqasglsrpsaqLpvAsaGpklp 39 l + g+ rps++L++ s+ p lp T323218_3 1025 LLPEGMYRPSLCLTADSPCPALP 1047 67899**********99999987 PP == domain 22 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323218_3 1057 APAFRQLVR-AQLLPHGGLFSPNSCLL 1082 9*****555.***************95 PP == domain 23 score: 6.2 bits; conditional E-value: 0.00068 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323218_3 1088 SAPASHWPLE-AQLMP 1102 6********9.99887 PP == domain 24 score: 21.6 bits; conditional E-value: 1e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323218_3 1107 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1155 8***********.***************99876666667899*******9 PP == domain 25 score: 7.0 bits; conditional E-value: 0.00038 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323218_3 1147 SLCGPSSCLPVASVGQAR 1164 5667***********976 PP == domain 26 score: 24.7 bits; conditional E-value: 1.1e-09 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323218_3 1161 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 1218 778888888888888888852.44311566899*************************9 PP == domain 27 score: 27.0 bits; conditional E-value: 2.1e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323218_3 1209 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1239 79***************************87 PP == domain 28 score: 15.4 bits; conditional E-value: 9.2e-07 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 +s +++gl rps++L +A +G k p ++LsrPss+ T323218_3 1225 PSRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1259 56799***************************975 PP == domain 29 score: 2.5 bits; conditional E-value: 0.0098 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323218_3 1248 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1293 57899***9637*********9989888888888888888888765 PP == domain 30 score: 1.6 bits; conditional E-value: 0.018 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323218_3 1278 PGLLPPEGLHRPSLSLTADSPRPAS 1302 6689999*******99998877755 PP == domain 31 score: 1.2 bits; conditional E-value: 0.025 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323218_3 1322 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1419 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323218_3 1420 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1448 7888*********************5543 PP == domain 32 score: 32.9 bits; conditional E-value: 3.1e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323218_3 1481 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1512 589****************************9 PP == domain 33 score: 17.5 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323218_3 1517 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1578 8***********.************************99*99999999999***********8 PP == domain 34 score: -3.7 bits; conditional E-value: 0.82 DUF4705 11 L 11 L T323218_3 1654 L 1654 2 PP == domain 35 score: 16.0 bits; conditional E-value: 6e-07 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP +CL T323218_3 1812 PQVGLSRPTCSLPASSPGPALPPGCVSRPDCCL 1844 899*****************************9 PP == domain 36 score: 20.8 bits; conditional E-value: 1.8e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323218_3 1844 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1877 6889****************************87 PP == domain 37 score: 56.7 bits; conditional E-value: 1.1e-19 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323218_3 1882 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1929 9*********************************************..97 PP == domain 38 score: -6.9 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa l+ +++ p + +++As+G+++ pa++ +Pss+L T323218_3 1963 TASRWPVQAqlwl*nslcrlRSCLPEASPG-PALAPTAASRGQVPacLPAARVQPSSSL 2020 599999998888888888876677777666.6678899999988777679999999987 PP == domain 39 score: -0.3 bits; conditional E-value: 0.073 DUF4705 29 LpvAsaGpklppagLs 44 + +A+a+p+l+++gLs T323218_3 2089 PCLAPAPPTLREVGLS 2104 567999********97 PP == domain 40 score: -3.8 bits; conditional E-value: 0.86 DUF4705 13 a........................paslqas.glsrpsaqLpvAsaGpklppag 42 p++l + + p + + +++a+p l +++ T323218_3 2130 R*plashqplpr*qrsa*apcltlaPPTLTPClTPVPPTLIPCLTPAPPMLTEVS 2184 4444444444447778887777777555554313446666666777777776665 PP == domain 41 score: -2.9 bits; conditional E-value: 0.47 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323218_3 2216 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 2246 7888887777788877777777777777766 PP == domain 42 score: -1.5 bits; conditional E-value: 0.17 DUF4705 6 asrrpLqa 13 as+rpL++ T323218_3 2265 ASHRPLHT 2272 999***95 PP == domain 43 score: -3.8 bits; conditional E-value: 0.91 DUF4705 4 APasrrpL 11 A as+rpL T323218_3 2317 ALASHRPL 2324 899****9 PP == domain 44 score: 12.9 bits; conditional E-value: 5.4e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323218_3 2449 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 2482 45568**************************987 PP == domain 45 score: 27.1 bits; conditional E-value: 2e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323218_3 2482 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 2515 8999****************************87 PP == domain 46 score: 61.7 bits; conditional E-value: 3e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323218_3 2520 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 2569 9***********************************************98 PP == domain 47 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323218_3 2565 SSSSLPAASAGLSCPQVGLE 2584 6899**************96 PP == domain 48 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323218_3 2596 GPSSV-LLASPGAKLPRVSLSRPSSS 2620 45555.579**************975 PP == domain 49 score: 3.5 bits; conditional E-value: 0.0048 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323218_3 2619 SSCLPVASFGPAQlmA 2634 79*********86443 PP == domain 50 score: 1.9 bits; conditional E-value: 0.014 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323218_3 2645 LLVASSGPELdLQSAFAGPASCL 2667 789*******8677888999998 PP == domain 51 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323218_3 2672 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 2732 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:00.89 # Mc/sec: 9026.08 // Query: T277293_1 [L=3136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 804 (0.049307); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.46s 00:00:02.24 Elapsed: 00:00:00.86 # Mc/sec: 10432.05 // Query: T277293_2 [L=3135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:00.78 # Mc/sec: 11498.34 // Query: T277293_3 [L=3135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 865 (0.053048); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:00.75 # Mc/sec: 11958.27 // Query: T294746_1 [L=480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 2327.45 // Query: T294746_2 [L=479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-05 25.7 0.2 1.7e-05 25.0 0.2 1.3 1 Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain ------ inclusion threshold ------ 0.011 16.1 0.0 4.1 7.8 0.2 2.2 2 DUF1048 Protein of unknown function (DUF1048) 0.13 12.2 0.3 0.2 11.5 0.3 1.2 1 tRNA_NucTran2_2 tRNA nucleotidyltransferase domain 2 putativ Domain annotation for each model (and alignments): >> Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.2 3.1e-09 1.7e-05 3 89 .. 250 336 .. 248 337 .. 0.82 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 3.1e-09 SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS----....S---TT-XXX CS Myb_DNA-bind_4 3 kWseeetrlLieawgerilelrfqergkkrnkklWeevaeamaergyersakqCkdKienLkkrYkkekerekgsgs....swpffeelda 89 Ws++e+r +++ w+ le ++ + kk+ + + +++a+++++rg+++s k+C + +L+ Y +++e + ++++ +p+ e l++ T294746_2 250 PWSDQEIRSFLQEWEF--LEREVYR-VKKKYHIVSKAIAQRLKQRGINKSWKECLQMLISLQDLYFTIQEAN-QRPRcqplPCPYGEALHR 336 7*************99..5555543.567777788999999999*************************986.666444557888888776 PP >> DUF1048 Protein of unknown function (DUF1048) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 0.2 0.00075 4.1 8 57 .. 261 311 .. 255 320 .. 0.91 2 ? 6.1 0.0 0.0025 14 14 44 .. 320 350 .. 313 358 .. 0.86 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00075 HHHHHHHHHHHHS-HHHHHHHHHHHHHHCCCT.B-SHHHHHHHHHHHHHHH CS DUF1048 8 keykefeaRvkaLPedYqtvykeiqkylwkvg.ategadlleilkevldLf 57 +e+ e+ v + Y++v k+i + l + g + ++++ l++l ++ dL+ T294746_2 261 QEWEFLEREVYRVKKKYHIVSKAIAQRLKQRGiNKSWKECLQMLISLQDLY 311 58888899999999******************9999***********9997 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0025 HHHHHHS-HHHHHHHHHHHHHHCCCTB-SHH CS DUF1048 14 eaRvkaLPedYqtvykeiqkylwkvgatega 44 + R + LP +Y ++ + i y wk+++++g T294746_2 320 RPRCQPLPCPYGEALHRILGYRWKISVFSGP 350 56999*********************99986 PP >> tRNA_NucTran2_2 tRNA nucleotidyltransferase domain 2 putative # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.3 3.7e-05 0.2 20 81 .. 252 316 .. 247 326 .. 0.83 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 3.7e-05 tRNA_NucTran2_2 20 teeqarsfLkswkfsnklikavtallkllekrknaeltkl...elykageealllaeelaqaqgq 81 +++++rsfL++w f +++ v++ + +++k ++l+++ + +k ++++l ++ l + ++ T294746_2 252 SDQEIRSFLQEWEFLEREVYRVKKKYHIVSKAIAQRLKQRginKSWKECLQMLISLQDLYFTIQE 316 5799***********************************95545599999999999988443333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 333 (0.0204219); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 2108.21 // Query: T294746_3 [L=479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.63 # Mc/sec: 2175.14 // Query: T337190_1 [L=6431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1545 (0.0947504); expected 326.1 (0.02) Passed bias filter: 398 (0.0244082); expected 326.1 (0.02) Passed Vit filter: 302 (0.0185208); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.65u 0.55s 00:00:06.20 Elapsed: 00:00:01.24 # Mc/sec: 14837.09 // Query: T337190_2 [L=6431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1872 (0.114804); expected 326.1 (0.02) Passed bias filter: 511 (0.0313382); expected 326.1 (0.02) Passed Vit filter: 449 (0.0275359); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.63u 0.81s 00:00:08.44 Elapsed: 00:00:01.60 # Mc/sec: 11498.75 // Query: T337190_3 [L=6431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 291 (0.0178462); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.52u 0.58s 00:00:05.09 Elapsed: 00:00:01.09 # Mc/sec: 16878.90 // Query: T099557_1 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-05 24.8 1.2 17 5.4 0.0 7.0 10 DUF4632 Domain of unknown function (DUF4632) ------ inclusion threshold ------ 0.068 13.2 1.2 1.5e+02 2.5 0.0 5.4 8 DUF2325 Uncharacterized protein conserved in bacteria (DUF2 0.64 10.3 5.8 45 4.4 0.1 4.5 4 SOCS Suppressor of cytokine signalling Domain annotation for each model (and alignments): >> DUF4632 Domain of unknown function (DUF4632) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.33 1.8e+03 25 40 .. 98 113 .. 96 119 .. 0.77 2 ! 4.5 0.0 0.0062 34 25 45 .. 116 136 .. 112 136 .. 0.88 3 ! 5.4 0.0 0.0032 17 25 46 .. 134 156 .. 131 165 .. 0.84 4 ? -1.6 0.0 0.48 2.6e+03 25 39 .. 156 170 .. 153 180 .. 0.82 5 ? 1.1 0.0 0.071 3.8e+02 25 40 .. 197 212 .. 195 221 .. 0.83 6 ? -2.2 0.0 0.78 4.2e+03 25 38 .. 233 246 .. 231 250 .. 0.75 7 ? -0.9 0.0 0.3 1.6e+03 25 40 .. 267 282 .. 265 290 .. 0.77 8 ? -2.0 0.0 0.64 3.5e+03 25 38 .. 285 298 .. 282 304 .. 0.75 9 ? 0.4 0.0 0.12 6.5e+02 25 45 .. 320 340 .. 318 340 .. 0.84 10 ! 4.9 0.0 0.0045 24 25 45 .. 338 358 .. 331 361 .. 0.90 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.33 DUF4632 25 agPrsaGWralrrlwd 40 a +s+G+ +l+rl+ T099557_1 98 AATHSSGYSSLQRLLT 113 5668999999999875 PP == domain 2 score: 4.5 bits; conditional E-value: 0.0062 DUF4632 25 agPrsaGWralrrlwdrvlaP 45 a P+s+G+ +l+rl+ v +P T099557_1 116 ATPHSSGYSSLQRLLTPVATP 136 89************9988766 PP == domain 3 score: 5.4 bits; conditional E-value: 0.0032 DUF4632 25 agPrsaGWralrrlwdrv.laPa 46 a P+s+G+ +l+rl++ + l+Pa T099557_1 134 ATPHSSGYSSLQRLLQWLlLTPA 156 89************997615676 PP == domain 4 score: -1.6 bits; conditional E-value: 0.48 DUF4632 25 agPrsaGWralrrlw 39 a +s+G+ +l+rl+ T099557_1 156 AATHSSGYSSLQRLL 170 66789*******996 PP == domain 5 score: 1.1 bits; conditional E-value: 0.071 DUF4632 25 agPrsaGWralrrlwd 40 a P+s G+ +l+rl+ T099557_1 197 ATPHSRGYSSLQRLLT 212 88*********99976 PP == domain 6 score: -2.2 bits; conditional E-value: 0.78 DUF4632 25 agPrsaGWralrrl 38 a P+s+G+ r l T099557_1 233 ATPHSSGYSLQRLL 246 89*****9765544 PP == domain 7 score: -0.9 bits; conditional E-value: 0.3 DUF4632 25 agPrsaGWralrrlwd 40 a +s+G+ +l+rl+ T099557_1 267 AATHSSGYSSLQRLLT 282 5668999999999975 PP == domain 8 score: -2.0 bits; conditional E-value: 0.64 DUF4632 25 agPrsaGWralrrl 38 a P+s+G+ r l T099557_1 285 ATPHSSGYSLQRLL 298 89*****9765544 PP == domain 9 score: 0.4 bits; conditional E-value: 0.12 DUF4632 25 agPrsaGWralrrlwdrvlaP 45 a +s+G+ +l+rl+ v +P T099557_1 320 AATHSSGYSSLQRLLTPVATP 340 56789*********9988766 PP == domain 10 score: 4.9 bits; conditional E-value: 0.0045 DUF4632 25 agPrsaGWralrrlwdrvlaP 45 a P+s+G+ +l+rl+ v +P T099557_1 338 ATPHSSGYSSLQRLLTPVATP 358 89*************999887 PP >> DUF2325 Uncharacterized protein conserved in bacteria (DUF2325) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 0.35 1.9e+03 79 91 .. 100 112 .. 96 115 .. 0.84 2 ? 0.0 0.0 0.16 8.4e+02 74 92 .. 113 131 .. 106 133 .. 0.83 3 ? 2.5 0.0 0.027 1.5e+02 72 92 .. 129 149 .. 124 151 .. 0.86 4 ? -2.0 0.0 0.66 3.6e+03 79 91 .. 158 170 .. 155 171 .. 0.85 5 ? 0.2 0.0 0.14 7.7e+02 74 91 .. 194 211 .. 192 213 .. 0.89 6 ? -1.2 0.0 0.39 2.1e+03 79 91 .. 269 281 .. 265 283 .. 0.84 7 ? -1.2 0.0 0.38 2e+03 79 92 .. 322 335 .. 319 337 .. 0.85 8 ? 1.9 0.0 0.039 2.1e+02 71 92 .. 332 353 .. 327 355 .. 0.85 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.35 DUF2325 79 lhsssvsalekal 91 hss+ s+l++ l T099557_1 100 THSSGYSSLQRLL 112 68********998 PP == domain 2 score: 0.0 bits; conditional E-value: 0.16 DUF2325 74 kpvvrlhsssvsalekale 92 +p + hss+ s+l++ l+ T099557_1 113 TPAATPHSSGYSSLQRLLT 131 678888*********9985 PP == domain 3 score: 2.5 bits; conditional E-value: 0.027 DUF2325 72 kgkpvvrlhsssvsalekale 92 +pv+ hss+ s+l++ l+ T099557_1 129 LLTPVATPHSSGYSSLQRLLQ 149 5689999***********997 PP == domain 4 score: -2.0 bits; conditional E-value: 0.66 DUF2325 79 lhsssvsalekal 91 hss+ s+l++ l T099557_1 158 THSSGYSSLQRLL 170 69*******9987 PP == domain 5 score: 0.2 bits; conditional E-value: 0.14 DUF2325 74 kpvvrlhsssvsalekal 91 +pv+ hs++ s+l++ l T099557_1 194 TPVATPHSRGYSSLQRLL 211 589999*********998 PP == domain 6 score: -1.2 bits; conditional E-value: 0.39 DUF2325 79 lhsssvsalekal 91 hss+ s+l++ l T099557_1 269 THSSGYSSLQRLL 281 68********998 PP == domain 7 score: -1.2 bits; conditional E-value: 0.38 DUF2325 79 lhsssvsalekale 92 hss+ s+l++ l+ T099557_1 322 THSSGYSSLQRLLT 335 69********9985 PP == domain 8 score: 1.9 bits; conditional E-value: 0.039 DUF2325 71 kkgkpvvrlhsssvsalekale 92 + +pv+ hss+ s+l++ l+ T099557_1 332 RLLTPVATPHSSGYSSLQRLLT 353 55689999**********9985 PP >> SOCS Suppressor of cytokine signalling # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.1 0.0083 45 13 33 .. 122 142 .. 100 150 .. 0.55 2 ? -0.1 0.0 0.21 1.1e+03 13 34 .. 203 224 .. 200 225 .. 0.88 3 ? 1.2 0.0 0.084 4.6e+02 13 35 .. 273 295 .. 269 298 .. 0.87 4 ? 3.0 0.1 0.023 1.3e+02 13 38 .. 326 351 .. 321 353 .. 0.90 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.0083 SOCS 13 scsslgeteseaeldvscrks 33 + ssl+++ + + +++s++ s T099557_1 122 GYSSLQRLLTPVATPHSSGYS 142 445555555555555555555 PP == domain 2 score: -0.1 bits; conditional E-value: 0.21 SOCS 13 scsslgeteseaeldvscrksl 34 + ssl+++ + a +++s++ sl T099557_1 203 GYSSLQRLLTPAATPHSSGYSL 224 789**********9***99886 PP == domain 3 score: 1.2 bits; conditional E-value: 0.084 SOCS 13 scsslgeteseaeldvscrksls 35 + ssl+++ + a +++s++ sl T099557_1 273 GYSSLQRLLTPAATPHSSGYSLQ 295 789**************998886 PP == domain 4 score: 3.0 bits; conditional E-value: 0.023 SOCS 13 scsslgeteseaeldvscrkslsrRS 38 + ssl+++ + + +++s++ s+ +R T099557_1 326 GYSSLQRLLTPVATPHSSGYSSLQRL 351 78*******************99995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.72 # Mc/sec: 1633.06 // Query: T099557_2 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 12.9 0.1 0.014 12.9 0.1 2.5 2 TALPID3 Hedgehog signalling target Domain annotation for each model (and alignments): >> TALPID3 Hedgehog signalling target # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 8.8e-07 0.014 948 1025 .. 133 212 .. 113 242 .. 0.72 2 ? 2.2 1.6 0.0015 25 950 1019 .. 268 347 .. 239 354 .. 0.41 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 8.8e-07 TALPID3 948 tllptPvptPqptppqs.PpssekelspvktPdsSpseseadgavsskekeaekgadtsp..aktlvktPvvtPvatPpkv 1025 ll+tP++tP+ + +s +s ++ l+pv tP sS + + +s + + +++++s + l tP +tP ++ T099557_2 133 WLLLTPAATPHSSGYSSgYSSLQRLLTPVATPHSSGYSYSSG-YSSLQRLLTPAATHSSGysLQWLLLTPGATPHSSGYSL 212 4677*********9999667889999********98766665.4444444444444433333778999******9986554 PP == domain 2 score: 2.2 bits; conditional E-value: 0.0015 TALPID3 950 lptPvptPqptppqs..........PpssekelspvktPdsSpseseadgavsskekeaekgadt.spaktlvktPvvtPv 1019 l+tPv+tP+ + + +s l ++ tP + p++s + +++ + a +++++ + l tP++tP T099557_2 268 LLTPVATPHSSGYSLqrllltpaatHSSGYSSLQRLLTPAATPHSSGYSS-LQRLLTPAATPHSSgYSLQWLLLTPAATPH 347 34444444432111111111110112233333334444444444443331.111112222222210224455556666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.75 # Mc/sec: 1567.73 // Query: T099557_3 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 1656.06 // Query: T147512_1 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.77 # Mc/sec: 2184.63 // Query: T147512_2 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 2670.11 // Query: T147512_3 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 2437.92 // Query: T052995_1 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.73 # Mc/sec: 2868.67 // Query: T052995_2 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 3433.00 // Query: T052995_3 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.71 # Mc/sec: 2949.48 // Query: T337208_1 [L=1720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00037 20.2 31.3 42 4.0 0.0 13.5 15 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.061 1e+03 9 17 .. 454 462 .. 452 463 .. 0.88 2 ? -2.7 0.0 0.32 5.2e+03 9 17 .. 492 500 .. 491 500 .. 0.86 3 ? 1.8 0.0 0.013 2.1e+02 1 17 [. 503 519 .. 503 520 .. 0.88 4 ! 3.6 0.0 0.0036 58 1 17 [. 541 557 .. 541 558 .. 0.87 5 ? -2.0 0.0 0.2 3.2e+03 9 15 .. 569 575 .. 567 576 .. 0.89 6 ! 2.4 0.1 0.0081 1.3e+02 1 15 [. 598 612 .. 598 614 .. 0.89 7 ! 3.6 0.0 0.0036 58 1 17 [. 636 652 .. 636 653 .. 0.87 8 ? 0.4 0.1 0.036 5.8e+02 6 15 .. 659 668 .. 655 670 .. 0.88 9 ! 4.0 0.0 0.0026 42 1 17 [. 673 689 .. 673 691 .. 0.89 10 ? 2.1 0.1 0.01 1.7e+02 1 15 [. 711 725 .. 711 727 .. 0.87 11 ! 3.6 0.0 0.0036 58 1 17 [. 749 765 .. 749 766 .. 0.87 12 ? 0.4 0.1 0.036 5.8e+02 6 15 .. 772 781 .. 768 783 .. 0.88 13 ! 3.6 0.0 0.0036 58 1 17 [. 786 802 .. 786 803 .. 0.87 14 ? 1.5 0.0 0.015 2.5e+02 6 17 .. 827 838 .. 826 839 .. 0.89 15 ? -1.9 0.0 0.19 3e+03 6 14 .. 845 853 .. 845 855 .. 0.85 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.061 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337208_1 454 VCPGVESSA 462 9*****977 PP == domain 2 score: -2.7 bits; conditional E-value: 0.32 Ectatomin 9 vCPTlksmA 17 CP ++s A T337208_1 492 LCPGVESSA 500 6*****976 PP == domain 3 score: 1.8 bits; conditional E-value: 0.013 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_1 503 WSRLPWSRVCPGMESSA 519 7888899*******977 PP == domain 4 score: 3.6 bits; conditional E-value: 0.0036 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337208_1 541 WSHLPWSGVCPGVESSA 557 7777899*******977 PP == domain 5 score: -2.0 bits; conditional E-value: 0.2 Ectatomin 9 vCPTlks 15 vCP ++s T337208_1 569 VCPGVES 575 9****98 PP == domain 6 score: 2.4 bits; conditional E-value: 0.0081 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP ++s T337208_1 598 WSRLPWSGVCPGVES 612 788889*******98 PP == domain 7 score: 3.6 bits; conditional E-value: 0.0036 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337208_1 636 WSHLPWSGVCPGVESSA 652 7777899*******977 PP == domain 8 score: 0.4 bits; conditional E-value: 0.036 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337208_1 659 WSGVCPGVES 668 889*****98 PP == domain 9 score: 4.0 bits; conditional E-value: 0.0026 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_1 673 WSRLPWSGVCPGVESSA 689 788889********987 PP == domain 10 score: 2.1 bits; conditional E-value: 0.01 Ectatomin 1 iskkvklTvCPTlks 15 +s + vCP ++s T337208_1 711 WSHLPWSGVCPGVES 725 7777899******98 PP == domain 11 score: 3.6 bits; conditional E-value: 0.0036 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337208_1 749 WSHLPWSGVCPGVESSA 765 7777899*******977 PP == domain 12 score: 0.4 bits; conditional E-value: 0.036 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337208_1 772 WSGVCPGVES 781 889*****98 PP == domain 13 score: 3.6 bits; conditional E-value: 0.0036 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337208_1 786 WSHLPWSGVCPGVESSA 802 7777899*******977 PP == domain 14 score: 1.5 bits; conditional E-value: 0.015 Ectatomin 6 klTvCPTlksmA 17 + vCP ++s A T337208_1 827 WSGVCPGVESSA 838 788******977 PP == domain 15 score: -1.9 bits; conditional E-value: 0.19 Ectatomin 6 klTvCPTlk 14 + vCP ++ T337208_1 845 WSGVCPGVE 853 788***998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 6740.59 // Query: T337208_2 [L=1719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 6736.67 // Query: T337208_3 [L=1719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0048 16.6 24.7 45 3.9 0.0 10.7 13 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.057 9.3e+02 9 17 .. 498 506 .. 494 507 .. 0.88 2 ? -2.7 0.0 0.32 5.2e+03 9 17 .. 517 525 .. 516 525 .. 0.86 3 ! 3.1 0.0 0.005 82 1 17 [. 528 544 .. 528 545 .. 0.87 4 ! 3.9 0.0 0.0027 45 1 17 [. 566 582 .. 566 583 .. 0.89 5 ! 3.9 0.0 0.0027 45 1 17 [. 585 601 .. 585 602 .. 0.89 6 ! 3.9 0.0 0.0027 45 1 17 [. 623 639 .. 623 640 .. 0.89 7 ? -2.1 0.1 0.22 3.6e+03 9 15 .. 650 656 .. 649 657 .. 0.89 8 ? -2.1 0.0 0.21 3.4e+03 9 15 .. 687 693 .. 685 694 .. 0.89 9 ! 3.9 0.0 0.0027 45 1 17 [. 698 714 .. 698 715 .. 0.89 10 ! 3.9 0.0 0.0027 45 1 17 [. 736 752 .. 736 753 .. 0.89 11 ? -2.1 0.1 0.22 3.6e+03 9 15 .. 763 769 .. 762 770 .. 0.89 12 ? -0.8 0.0 0.082 1.3e+03 1 15 [. 810 824 .. 810 825 .. 0.84 13 ? -2.0 0.0 0.2 3.2e+03 9 15 .. 836 842 .. 834 843 .. 0.89 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.057 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337208_3 498 VCPGVESSA 506 9*****977 PP == domain 2 score: -2.7 bits; conditional E-value: 0.32 Ectatomin 9 vCPTlksmA 17 CP ++s A T337208_3 517 LCPGVESSA 525 6*****976 PP == domain 3 score: 3.1 bits; conditional E-value: 0.005 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337208_3 528 WSHLPWSRVCPGVESSA 544 77778999******977 PP == domain 4 score: 3.9 bits; conditional E-value: 0.0027 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_3 566 WSRLPWSGVCPGVESSA 582 788889********977 PP == domain 5 score: 3.9 bits; conditional E-value: 0.0027 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_3 585 WSRLPWSGVCPGVESSA 601 788889********977 PP == domain 6 score: 3.9 bits; conditional E-value: 0.0027 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_3 623 WSRLPWSGVCPGVESSA 639 788889********977 PP == domain 7 score: -2.1 bits; conditional E-value: 0.22 Ectatomin 9 vCPTlks 15 vCP ++s T337208_3 650 VCPGVES 656 9****98 PP == domain 8 score: -2.1 bits; conditional E-value: 0.21 Ectatomin 9 vCPTlks 15 vCP ++s T337208_3 687 VCPGVES 693 9****98 PP == domain 9 score: 3.9 bits; conditional E-value: 0.0027 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_3 698 WSRLPWSGVCPGVESSA 714 788889********977 PP == domain 10 score: 3.9 bits; conditional E-value: 0.0027 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337208_3 736 WSRLPWSGVCPGVESSA 752 788889********977 PP == domain 11 score: -2.1 bits; conditional E-value: 0.22 Ectatomin 9 vCPTlks 15 vCP ++s T337208_3 763 VCPGVES 769 9****98 PP == domain 12 score: -0.8 bits; conditional E-value: 0.082 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP +s T337208_3 810 WSRLPWSGVCPGAES 824 788889*****8876 PP == domain 13 score: -2.0 bits; conditional E-value: 0.2 Ectatomin 9 vCPTlks 15 vCP ++s T337208_3 836 VCPGVES 842 9****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.60 # Mc/sec: 8196.28 // Query: T165814_1 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 3709.85 // Query: T165814_2 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 3705.24 // Query: T165814_3 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 3534.23 // Query: T090155_1 [L=2883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.42s 00:00:01.78 Elapsed: 00:00:00.75 # Mc/sec: 10997.03 // Query: T090155_2 [L=2882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0061 15.7 19.2 0.0093 15.1 19.2 1.2 1 CitMHS Citrate transporter ------ inclusion threshold ------ 1.1 9.5 0.0 1.1 9.5 0.0 3.5 2 DUF912 Nucleopolyhedrovirus protein of unknown function 8.3 5.2 16.4 80 2.0 18.5 1.3 1 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 19.2 1.7e-06 0.0093 72 165 .. 1458 1613 .. 1443 1617 .. 0.72 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.7e-06 xx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF CitMHS 72 rd.llvllvlltallsafvsn.dgdvlimipivlslakrlkklppllliplalaaniggaltpiGtpttr............................ 139 ++ ++v+++++++++ ++ + ++++m+ iv+ ++ +++ ++++i+++++++++ +++++ ++ T090155_2 1458 ETmMIVMMMVVMVMMVIVMVMmVMMAMVMMVIVMVMMV-MMMVMMMVMIVMVMMMMVMVMMVMVSVMVIMvtddgdgdgddgdgddgdddgdgddadg 1554 34233333333333323332213336666666666665.456666677777777777777777777766699************************** PP .................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 140 .................................glslpnllllalllvgllplvllfmf 165 g ++++++++++++ +++++++++m+ T090155_2 1555 dadgddsdgdddgddngdgddgdddgdgdnednGDMIMVMMVVVMVMMMVMVMIVMVMV 1613 *********************************88888888888877777777777743 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -33.6 42.3 3 1.6e+04 83 88 .. 1484 1489 .. 1430 1532 .. 0.66 2 ? 9.5 0.0 0.0002 1.1 57 89 .. 1583 1615 .. 1549 1617 .. 0.49 Alignments for each domain: == domain 1 score: -33.6 bits; conditional E-value: 3 DUF912 83 iyYfvi 88 ++ vi T090155_2 1484 MVMMVI 1489 333333 PP == domain 2 score: 9.5 bits; conditional E-value: 0.0002 DUF912 57 aekaqalnillisllavvcvlvllyviyYfvil 89 ++ + i++++++++v+++v++++++ vi+ T090155_2 1583 DNEDNGDMIMVMMVVVMVMMMVMVMIVMVMVIM 1615 223333345555555566666666666666664 PP >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 18.5 0.015 80 102 172 .. 1452 1534 .. 1435 1789 .. 0.70 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.015 PHO4 102 alaaagsavkwgglvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvainaflilyk............l 172 ++++ +++ + ++ +++++v+ ++ +++a++++++v+ ++++++ + ++ +++++++++++++++++ T090155_2 1452 LVVMEVETMMIVMMMVVMVMMVIVMVMMVMMAMVMMVIVMVMMVMMMVMMMVMIVMVMMMMVMVMMVMVSvmvimvtddgdgD 1534 22222222222356667777777777788888888888888766666666666666666666666666664444333433330 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1500 (0.0919907); expected 326.1 (0.02) Passed bias filter: 361 (0.0221391); expected 326.1 (0.02) Passed Vit filter: 165 (0.010119); expected 16.3 (0.001) Passed Fwd filter: 56 (0.00343432); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.85u 0.51s 00:00:03.36 Elapsed: 00:00:01.07 # Mc/sec: 7705.53 // Query: T090155_3 [L=2882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1217 (0.0746351); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.84 # Mc/sec: 9815.37 // Query: T090079_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 696 (0.0426837); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.77 # Mc/sec: 9897.73 // Query: T090079_2 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 616 (0.0377775); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.74 # Mc/sec: 10298.99 // Query: T090079_3 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 894 (0.0548264); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 12493.85 // Query: T221669_1 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 2477.85 // Query: T221669_2 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 2226.47 // Query: T221669_3 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 240 (0.0147185); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 2598.99 // Query: T093884_1 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 4542.12 // Query: T093884_2 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 762 (0.0467313); expected 326.1 (0.02) Passed bias filter: 408 (0.0250215); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 4213.59 // Query: T093884_3 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 616 (0.0377775); expected 326.1 (0.02) Passed bias filter: 373 (0.022875); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 4096.55 // Query: T000158_1 [L=2978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 11832.71 // Query: T000158_2 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 14941.56 // Query: T000158_3 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.70 # Mc/sec: 12166.70 // Query: T053289_1 [L=1362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 5647.03 // Query: T053289_2 [L=1362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.75 # Mc/sec: 5195.27 // Query: T053289_3 [L=1362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 6284.60 // Query: T369073_1 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 6237.42 // Query: T369073_2 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 7506.04 // Query: T369073_3 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 7501.19 // Query: T281169_1 [L=3384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.28s 00:00:01.38 Elapsed: 00:00:00.61 # Mc/sec: 15870.57 // Query: T281169_2 [L=3383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.62 # Mc/sec: 15609.98 // Query: T281169_3 [L=3383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1079 (0.066172); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.35s 00:00:01.77 Elapsed: 00:00:00.66 # Mc/sec: 14663.92 // Query: T316464_1 [L=3900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.57 # Mc/sec: 19236.62 // Query: T316464_2 [L=3900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 19574.10 // Query: T316464_3 [L=3900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 19574.10 // Query: T271699_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 3757.59 // Query: T271699_2 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 2960.53 // Query: T271699_3 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-21 75.7 0.4 4.5e-21 74.4 0.4 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.4 0.4 2.7e-25 4.5e-21 7 56 .. 197 246 .. 197 246 .. 0.96 Alignments for each domain: == domain 1 score: 74.4 bits; conditional E-value: 2.7e-25 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetits 56 r a+Wld++e pk++pk++lhqkkvm+tVwWs+++li+y+fl+pg+ti s T271699_3 197 RPAEWLDREEVPKHFPKSNLHQKKVMVTVWWSTASLIHYSFLNPGKTIIS 246 5689********************************************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 3484.08 // Query: T173078_1 [L=197] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 14.2 0.1 0.055 13.5 0.1 1.4 1 SoxG Sarcosine oxidase, gamma subunit family Domain annotation for each model (and alignments): >> SoxG Sarcosine oxidase, gamma subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 3.3e-06 0.055 26 88 .. 98 157 .. 62 163 .. 0.82 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.3e-06 SoxG 26 kgvaskesvlwlaPdeflvidqegkaalaalaealaelasvvdlShgrvlisisGakaeavla 88 ++a + v++laP lv++ + l la+a a + v++ ++rv++++ G++ ++ l T173078_1 98 AALAHRD-VVALAPHPVLVAV--LVHRLLGLARAAAATRAEVGVRGRRVRVRVRGRRRRRRLV 157 4455555.9*******99999..7788889999999999*****************9998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (197 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 841.17 // Query: T173078_2 [L=197] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (197 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.71 # Mc/sec: 793.78 // Query: T173078_3 [L=197] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (197 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 909.01 // Query: T032254_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.63 # Mc/sec: 1612.06 // Query: T032254_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1781.74 // Query: T032254_3 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 1664.91 // Query: T325319_1 [L=492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 2307.42 // Query: T325319_2 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 2553.94 // Query: T325319_3 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.088 13.1 0.0 0.17 12.2 0.0 1.4 1 Phospho_p8 DNA-binding nuclear phosphoprotein p8 Domain annotation for each model (and alignments): >> Phospho_p8 DNA-binding nuclear phosphoprotein p8 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 1.1e-05 0.17 23 57 .. 213 247 .. 208 247 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.1e-05 Phospho_p8 23 gKgRtKkEasehtnrpdPsGHeRKivtklqNtekk 57 +Kg t E++++t r P+ He ++++kl N+ +k T325319_3 213 SKGLTLLEQALRTYRLAPGRHECRVAQKLLNGRRK 247 6788889*************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 2341.11 // Query: T367384_1 [L=2831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 680 (0.0417024); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.41s 00:00:01.89 Elapsed: 00:00:00.81 # Mc/sec: 9998.78 // Query: T367384_2 [L=2830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 637 (0.0390654); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.42s 00:00:01.90 Elapsed: 00:00:00.82 # Mc/sec: 9873.35 // Query: T367384_3 [L=2830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 514 (0.0315221); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.43s 00:00:01.67 Elapsed: 00:00:00.72 # Mc/sec: 11244.65 // Query: T258364_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 11.8 0.0 37 3.8 0.0 4.0 5 CBM9_2 Carbohydrate-binding family 9 0.53 9.9 3.4 20 4.7 0.3 4.4 5 Borrelia_lipo_1 Borrelia burgdorferi virulent strain associa 0.65 9.7 6.0 6.3 6.5 0.2 5.0 5 Sec34 Sec34-like family Domain annotation for each model (and alignments): >> CBM9_2 Carbohydrate-binding family 9 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.048 2.6e+02 28 64 .. 301 337 .. 286 356 .. 0.88 2 ? -0.5 0.0 0.15 8.1e+02 31 60 .. 476 505 .. 470 511 .. 0.86 3 ? -0.5 0.0 0.15 8.1e+02 7 62 .. 488 543 .. 482 551 .. 0.77 4 ? -3.8 0.0 1.5 8.1e+03 28 50 .. 611 633 .. 601 639 .. 0.82 5 ? 3.8 0.0 0.0068 37 28 56 .. 669 697 .. 645 700 .. 0.86 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.048 CBM9_2 28 vPevefriahtddaillkykvkeksvravatedngrv 64 P ++ ++ h++d+il +y+++ ++ + +++ +++ T258364_1 301 SPTIQTQLSHNTDSILPQYRLNSPAIQTHLSHNTDSI 337 5899999999999999999999999999999988876 PP == domain 2 score: -0.5 bits; conditional E-value: 0.15 CBM9_2 31 vefriahtddaillkykvkeksvravated 60 ++ ++ h++d+ ll+y+++ ++++ + +++ T258364_1 476 IQTQVSHNTDSTLLQYRLNSRTIQTQLSHN 505 567899*************99999887765 PP == domain 3 score: -0.5 bits; conditional E-value: 0.15 CBM9_2 7 ldeekiefqaidvvnWkeypyvPevefriahtddaillkykvkeksvravatedng 62 l + +++ ++i++ ++ P ++ ++ h++d+ l +y+++ +++ + +++ + T258364_1 488 LLQYRLNSRTIQTQLSHNRLNSPTIQTQLSHNTDSTLPQYRLNSPTIQTQLSHNTD 543 44566666777777777777889999999999999999999999888888887766 PP == domain 4 score: -3.8 bits; conditional E-value: 1.5 CBM9_2 28 vPevefriahtddaillkykvke 50 P v+ ++ h++d+ l +y+++ T258364_1 611 SPTVQTQLSHSTDSTLPQYRLNS 633 69999999999999999998875 PP == domain 5 score: 3.8 bits; conditional E-value: 0.0068 CBM9_2 28 vPevefriahtddaillkykvkeksvrav 56 P v+ ++ h++d+ ll+y+++ +++a T258364_1 669 SPTVQTQLSHSTDSTLLHYRLNSPTIQAE 697 699*****************999888875 PP >> Borrelia_lipo_1 Borrelia burgdorferi virulent strain associated lipoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 0.055 3e+02 150 189 .. 326 365 .. 302 375 .. 0.66 2 ? 4.7 0.3 0.0037 20 147 176 .. 473 502 .. 469 524 .. 0.84 3 ? -1.4 0.0 0.27 1.5e+03 149 175 .. 511 537 .. 505 553 .. 0.86 4 ? -3.1 0.0 0.92 5e+03 148 175 .. 576 603 .. 574 611 .. 0.84 5 ? -0.3 0.0 0.13 7.1e+02 150 175 .. 672 697 .. 666 702 .. 0.88 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.055 Borrelia_lipo_1 150 lreifskmikklLlDYqnntnsIktdnskLksyvnklykq 189 +++ s+ + ++ Y+ n I+t+ s ++ + ++ q T258364_1 326 IQTHLSHNTDSIIPKYRLNYPTIQTELSHNADSTRTIQTQ 365 5666666677777777777777777766666666555555 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0037 Borrelia_lipo_1 147 llslreifskmikklLlDYqnntnsIktdn 176 l +++++s+ + +Ll Y+ n I+t T258364_1 473 TLTIQTQVSHNTDSTLLQYRLNSRTIQTQL 502 689************************754 PP == domain 3 score: -1.4 bits; conditional E-value: 0.27 Borrelia_lipo_1 149 slreifskmikklLlDYqnntnsIktd 175 ++++ s+ + +L Y+ n I+t T258364_1 511 TIQTQLSHNTDSTLPQYRLNSPTIQTQ 537 5899999999**************986 PP == domain 4 score: -3.1 bits; conditional E-value: 0.92 Borrelia_lipo_1 148 lslreifskmikklLlDYqnntnsIktd 175 l ++++ s++ + +L Y+ n ++t T258364_1 576 LTVQTQLSHSTDSTLPQYRLNSPTVQTQ 603 5678999999***********9999975 PP == domain 5 score: -0.3 bits; conditional E-value: 0.13 Borrelia_lipo_1 150 lreifskmikklLlDYqnntnsIktd 175 ++++ s++ + +Ll Y+ n I+ + T258364_1 672 VQTQLSHSTDSTLLHYRLNSPTIQAE 697 5889999*****************87 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 0.26 1.4e+03 63 87 .. 151 175 .. 143 179 .. 0.89 2 ? 6.5 0.2 0.0012 6.3 21 87 .. 195 261 .. 191 270 .. 0.94 3 ? -0.1 0.0 0.13 7.1e+02 63 87 .. 281 305 .. 272 318 .. 0.84 4 ? -1.0 0.0 0.25 1.4e+03 53 87 .. 351 385 .. 344 389 .. 0.80 5 ? -0.6 0.0 0.19 1e+03 63 87 .. 405 429 .. 398 452 .. 0.85 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.26 Sec34 63 eieekLkyFeeldpitrkLnspgss 87 +i+++L y ++ p++ +Lnsp+ + T258364_1 151 TIQTQLPYNTDSTPLQYRLNSPTIQ 175 699*******************976 PP == domain 2 score: 6.5 bits; conditional E-value: 0.0012 Sec34 21 ealeqleeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss 87 ++++ql++ + ++ +v+++ s + ++ ++++ +++ + +i+++L y ++ p++ +Lnsp+ + T258364_1 195 TIQTQLSQYRLNYPTVQTQLSHSRLNSRTIHSTLPQYRLNSPTIQTQLPYNTDSTPLQYRLNSPTIQ 261 57899***********************************************************986 PP == domain 3 score: -0.1 bits; conditional E-value: 0.13 Sec34 63 eieekLkyFeeldpitrkLnspgss 87 +i+++L y ++ p++ +Lnsp+ + T258364_1 281 TIQTQLPYNTDSTPLQYRLNSPTIQ 305 69999*****************988 PP == domain 4 score: -1.0 bits; conditional E-value: 0.25 Sec34 53 eqkrleelaeeieekLkyFeeldpitrkLnspgss 87 e ++ + +++i+++L++ ++ p + +Lnsp+ + T258364_1 351 ELSHNADSTRTIQTQLSHNTDSTPPQYRLNSPTIQ 385 45566677889999999999999999999999876 PP == domain 5 score: -0.6 bits; conditional E-value: 0.19 Sec34 63 eieekLkyFeeldpitrkLnspgss 87 +i+++L y ++ p++ +Lnsp+ + T258364_1 405 TIQTQLPYNTDSTPLQYRLNSPTID 429 6999******************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 3341.61 // Query: T258364_2 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 3586.71 // Query: T258364_3 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.73 # Mc/sec: 3291.91 // Query: T259996_1 [L=656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 3076.56 // Query: T259996_2 [L=656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 3292.46 // Query: T259996_3 [L=656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3180.86 // Query: T172326_1 [L=2953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.64 # Mc/sec: 13200.05 // Query: T172326_2 [L=2952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.025 13.9 0.0 0.043 13.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 2.6e-06 0.043 83 121 .. 781 819 .. 776 824 .. 0.86 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 2.6e-06 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaar 121 v +p t p+wd + +g ++l+ yr++ll gl+ + T172326_2 781 VRIQLPGTDPQWDSNERQGMQRLNWYREALLEGLKKGSS 819 6678899***************************87654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 10827.14 // Query: T172326_3 [L=2952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-39 134.1 1.6 3.5e-19 69.0 0.0 2.2 2 Gag_p30 Gag P30 core shell protein 5.5e-22 77.7 0.2 1.1e-21 76.7 0.2 1.4 1 Gag_MA Matrix protein (MA), p15 1.9e-16 60.4 0.0 3.4e-16 59.6 0.0 1.3 1 RNase_H RNase H 2.2e-06 27.7 0.0 4.5e-06 26.7 0.0 1.5 1 RVP Retroviral aspartyl protease 7e-05 22.9 0.3 0.00016 21.8 0.3 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger ------ inclusion threshold ------ 0.014 15.9 0.1 0.026 15.1 0.1 1.4 1 Asp_protease_2 Aspartyl protease 0.049 14.1 0.1 0.093 13.2 0.1 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.9 0.5 5.5e-21 1.3e-17 2 69 .. 699 766 .. 698 779 .. 0.93 2 ! 69.0 0.0 1.5e-22 3.5e-19 117 192 .. 820 895 .. 816 902 .. 0.92 Alignments for each domain: == domain 1 score: 63.9 bits; conditional E-value: 5.5e-21 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknv 69 y pf a+dl nwk+n ps++e+pq++ l+++i+ th+ tw dc qll l+ +er+rvl a k + T172326_3 699 YQPFNAADLLNWKNNTPSYTEKPQAIIDLLQTIIQTHNTTWADCHQLLMYLFNMDERRRVLQAATKWL 766 89***********************************************************9998855 PP == domain 2 score: 69.0 bits; conditional E-value: 1.5e-22 Gag_p30 117 rgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqe 192 + a++ tn+ kv ev+qgk+espa f erl eay r tp+dp++pe++ ++++++ +sa dir+klq+ g+ + T172326_3 820 KKGAQKATNVNKVSEVIQGKDESPAQFYERLCEAYCRCTPFDPDSPENQRMISMTLVSRSAEDIRRKLQKQAGFAG 895 4567889**************************************************************9887765 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.7 0.2 4.7e-25 1.1e-21 2 108 .. 480 582 .. 478 601 .. 0.87 Alignments for each domain: == domain 1 score: 76.7 bits; conditional E-value: 4.7e-25 XX---HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXX CS Gag_MA 2 qtvstPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflp 101 q++ tPL +l++fk + + +v++ +kl+tlC+ +Wp+l+vgWP eG+ d ++++kv +kv Gk G+p q pYi tW +Lv PP w++ + T172326_3 480 QSKPTPLGTMLKNFK--KGFNGDYGVNMTPGKLRTLCEIDWPALEVGWPSEGSLDRSLVSKVWHKVT--GKPGYPAQFPYIDTWLQLVLGPPWWLRGQAA 575 8899**********9..5677899******************************************9..89************************98777 PP XXXXXXX CS Gag_MA 102 skplpkk 108 + ++k T172326_3 576 AVLMAKG 582 6555444 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 0.0 1.5e-19 3.4e-16 5 123 .. 1340 1458 .. 1337 1460 .. 0.85 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 1.5e-19 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpv 98 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + + ++++vniytDS+Y++ +++ vh++ +++ +s +k+v T172326_3 1340 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASElS--EGKTVNIYTDSQYAFLTLQ--VHGALYKEKGLlNSGGKDV 1432 68*******99999******766766.557778999****************8844..9**************9555..566644444443888899* PP TT.HHHHHHHHHCHCSSEEEEEE-SC CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkg 123 k + + +ll+++ k++kv ++h++g T172326_3 1433 KY*QGILQLLEAVWKPQKVAVMHCRG 1458 ************************98 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.0 1.9e-09 4.5e-06 3 56 .. 1021 1070 .. 1019 1090 .. 0.87 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 1.9e-09 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatet 56 ++P++++ +ggk i +l+DtGA+++v++ P + k++ + G++g++ + T172326_3 1021 KEPMVRMTVGGKDIGFLVDTGAEHSVVTTPVTPLS----KKTIDIIGATGISAK 1070 68********************************9....999999999999844 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.3 6.7e-08 0.00016 1 32 [. 1547 1578 .. 1547 1578 .. 0.98 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 6.7e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVi 32 H++tHlG++ l++ll +++++l++++++++V+ T172326_3 1547 HETTHLGQESLEKLLGQYFYILHLSALAKTVV 1578 9****************************997 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.1 1.1e-05 0.026 1 26 [. 1025 1050 .. 1025 1059 .. 0.91 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.1e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispe 26 v+ t++Gk++ fl+DTGa ++++++ T172326_3 1025 VRMTVGGKDIGFLVDTGAEHSVVTTP 1050 6789******************9975 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 4e-05 0.093 1 25 [. 1025 1049 .. 1025 1054 .. 0.90 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4e-05 EEEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiise 25 v +t+ gk++ flvDTGA+++++++ T172326_3 1025 VRMTVGGKDIGFLVDTGAEHSVVTT 1049 5689******************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.65 # Mc/sec: 12992.57 // Query: T099750_1 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 3183.32 // Query: T099750_2 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0004 20.5 0.3 54 4.0 0.0 4.7 5 Flavokinase Riboflavin kinase Domain annotation for each model (and alignments): >> Flavokinase Riboflavin kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 0.099 1.6e+03 79 100 .. 23 44 .. 16 49 .. 0.82 2 ! 3.3 0.0 0.0054 88 12 32 .. 116 136 .. 111 143 .. 0.78 3 ! 4.0 0.0 0.0033 54 11 33 .. 150 172 .. 144 183 .. 0.78 4 ! 3.4 0.0 0.0051 84 10 31 .. 184 205 .. 177 217 .. 0.80 5 ! 2.9 0.0 0.007 1.1e+02 11 30 .. 220 239 .. 213 248 .. 0.79 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.099 EEEEEEEE----SSHHHHHHHH CS Flavokinase 79 ellgflRpekkFdsleaLiaqi 100 +l++flR+e +F+++ aq+ T099750_2 23 QLYNFLRSECTFQQVTPVSAQL 44 7899*********998887776 PP == domain 2 score: 3.3 bits; conditional E-value: 0.0054 ES-SSCHTTTT--EEEEE-S- CS Flavokinase 12 vkGkgrGrelgfpTanlelek 32 ++ ++r elg pTan ++++ T099750_2 116 THRQQRPAELGSPTANSTPQN 136 67789999********98733 PP == domain 3 score: 4.0 bits; conditional E-value: 0.0033 EES-SSCHTTTT--EEEEE-S-B CS Flavokinase 11 VvkGkgrGrelgfpTanlelekl 33 ++ ++r elg pTan ++++ T099750_2 150 FTHRQQRPAELGSPTANSTPQNS 172 57889999*********997433 PP == domain 4 score: 3.4 bits; conditional E-value: 0.0051 EEES-SSCHTTTT--EEEEE-S CS Flavokinase 10 kVvkGkgrGrelgfpTanlele 31 + ++ ++r elg pTan +++ T099750_2 184 RFTHRQQRPAELGSPTANSAPQ 205 567889999*********9863 PP == domain 5 score: 2.9 bits; conditional E-value: 0.007 EES-SSCHTTTT--EEEEE- CS Flavokinase 11 VvkGkgrGrelgfpTanlel 30 ++ ++r elg pTan + T099750_2 220 FTHRQQRPAELGSPTANSSS 239 57889999*********886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.68 # Mc/sec: 2570.54 // Query: T099750_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.67 # Mc/sec: 2608.91 // Query: T048335_1 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 4443.23 // Query: T048335_2 [L=993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 4581.94 // Query: T048335_3 [L=993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 4581.94 // Query: T127323_1 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 4964.64 // Query: T127323_2 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 5378.36 // Query: T127323_3 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 4745.61 // Query: T103483_1 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 7800.87 // Query: T103483_2 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 7280.81 // Query: T103483_3 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-120 400.7 18.8 6.5e-120 400.2 18.8 1.2 1 Transposase_22 L1 transposable element 0.0086 16.2 5.8 0.016 15.3 5.8 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain ------ inclusion threshold ------ 0.038 14.3 2.6 0.095 13.1 2.6 1.6 1 Spectrin Spectrin repeat 0.044 13.0 8.5 0.083 12.1 8.5 1.4 1 GAS Growth-arrest specific micro-tubule binding 0.048 13.7 2.0 0.072 13.1 0.6 2.0 2 Med2 Mediator complex subunit 2 0.091 12.9 4.1 0.24 11.5 4.1 1.7 1 KLRAQ Predicted coiled-coil domain-containing prote 0.12 12.8 4.0 0.28 11.6 4.0 1.6 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.15 10.5 7.1 0.25 9.8 7.1 1.2 1 DUF342 Protein of unknown function (DUF342) 0.19 9.9 6.1 0.28 9.4 6.1 1.1 1 DUF4613 Domain of unknown function (DUF4613) 0.24 11.0 7.2 0.49 10.0 7.2 1.4 1 IncA IncA protein 0.24 10.6 8.0 0.35 10.1 8.0 1.2 1 APG6 Autophagy protein Apg6 0.32 10.9 1.5 0.58 10.0 1.5 1.3 1 DUF1664 Protein of unknown function (DUF1664) 1.8 8.7 5.8 8.2 6.6 0.6 2.5 2 XhlA Haemolysin XhlA 2.7 7.9 7.6 7.4 6.5 7.6 1.7 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 7.9 6.5 12.9 20 5.1 12.9 1.6 1 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 400.2 18.8 6e-123 6.5e-120 1 305 [. 1256 1526 .. 1256 1527 .] 0.97 Alignments for each domain: == domain 1 score: 400.2 bits; conditional E-value: 6e-123 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikkdfykelkelieskakele.alkekee......ntekql 85 +Gkk+ nrk++nsk++ +s+P+ke+sssPat + ++++f+elr+e++++++y+e +e+i++k+ke+e ++k++ee nt+k+l T103483_3 1256 MGKKQ---NRKTGNSKTQRASPPPKEHSSSPAT---EQS*MENNFDELREEGFRRSNYSEPREDIQTKGKEVEnFEKNLEEcitritNTKKCL 1342 79***...*************************...456889*******************************9******9666666666666 PP X..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 86 kiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileq 178 k el+elktk+ el++e++ sl+sr ++leervsa+ede+++++re+k+rekr+k++eq T103483_3 1343 K------------------ELMELKTKAPELREECR------------------SLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQ 1399 6..................9****************..................*************************************** PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhii+r+tkv++k+k+l+a+rek T103483_3 1400 SLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIIRFTKVEMKEKMLRAAREK 1492 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqil 305 GrvtlkGkPirltadlsaetl+arrew+++++il T103483_3 1493 GRVTLKGKPIRLTADLSAETLQARREWGPIFNIL 1526 *********************************8 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 5.8 1.5e-05 0.016 9 100 .. 1292 1383 .. 1290 1386 .. 0.97 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.5e-05 H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +n+++++e +R ++++ +++ ++ ++ ++ lee+ ++ + k +++++ k +a el++e ++l + ++le++++++e+e++++ T103483_3 1292 NNFDELREEGFRRSNYSEPREDIQTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDM 1383 8****************************************************************************************986 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 2.6 8.7e-05 0.095 2 90 .. 1320 1406 .. 1304 1412 .. 0.58 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 8.7e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWe 90 + ++f+++++e+ i+++++ l ++l + +++ +l ++++ l+ ++ +erv a ++ +++ eg++ +++i+ + l+e W+ T103483_3 1320 EVENFEKNLEECITRITNTKKCL--KELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWD 1406 34555555555555555555555..4444455555555556666666666666666666666666666666666666666666666665 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 8.5 7.7e-05 0.083 57 127 .. 1315 1385 .. 1299 1403 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 7.7e-05 GAS 57 krltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelyk 127 + +++++ ek++ee +++n +k ++l++lk++ el +e ++l+ +++l++r++++e+e +++++ T103483_3 1315 QTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKR 1385 4444566777777777778888999999**************************************99986 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.6 6.6e-05 0.072 47 96 .. 1317 1366 .. 1300 1372 .. 0.83 2 ? -2.5 0.0 4.8 5.3e+03 4 16 .. 1427 1439 .. 1425 1458 .. 0.77 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 6.6e-05 Med2 47 LkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++++F++ L + ++++++k+++++l+e k++ e++e ++ r r T103483_3 1317 KGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRY 1366 5689*******************************999998766666554 PP == domain 2 score: -2.5 bits; conditional E-value: 4.8 Med2 4 nkLtqclddiLkv 16 +kL+++l+di++ T103483_3 1427 TKLENTLQDIIQE 1439 79999***99875 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 4.1 0.00022 0.24 34 88 .. 1347 1397 .. 1322 1406 .. 0.70 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00022 KLRAQ 34 elkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqk 88 elk+k+ +l ++E sL r +qLe rv+++ +e++ +++ +k ++k +++ T103483_3 1347 ELKTKAPEL---REECRSLRSRYNQLEERVSAMEDEMNDMKRE-GKFREKRIKRN 1397 455555555...5799**********************88755.55553333333 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 4.0 0.00026 0.28 7 95 .. 1311 1408 .. 1306 1410 .. 0.67 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00026 Syntaxin-6_N 7 keeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevr 92 +e++q + +++e+ +++ +++ ++++ ++ el+ eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e+ T103483_3 1311 REDIQTKGKEVENFEKNLeeciTRITNTKKClKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDemndMKREGKFREKRIKRNEQSLQEIW 1405 5666655555555555552112333333333448899999999********************99987333222447788888888888888776 PP Syntaxin-6_N 93 eev 95 + v T103483_3 1406 DYV 1408 655 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 7.1 0.00023 0.25 337 421 .. 1319 1398 .. 1308 1410 .. 0.84 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00023 DUF342 337 eklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnk 421 ++++++e++lee+ ++++ kk +k+l +lk +e +e+ +l+ +++l+e+++++e+e++++k e + + e++ik n+ T103483_3 1319 KEVENFEKNLEECITRITNTKKCLKELMELKT---KAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFR--EKRIKRNE 1398 56688999999999999999999999999665...4589********************************9999..56666554 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 6.1 0.00025 0.28 500 595 .. 1236 1352 .. 1225 1385 .. 0.78 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00025 DUF4613 500 splssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkknlekekeaeqlskeler 573 ++++sv + +++ + ++++++ +++++++ +s + + + ++ +++sp +e +++ +k ke+e+++k+le+ T103483_3 1236 TKNPSVHHHHQRPKVDKTTKMGKKQNRKTGNSKTQRASPPPKE---HSSSPATEqs*mennfdelreegfrrsnysepREDIQTKGKEVENFEKNLEE 1330 5566666655555788888888888888777777744333333...33333333458889999************9988888999************* PP DUF4613 574 lsekltevqqsLseltdllqng 595 ++++t+ +++L el++l+++ T103483_3 1331 CITRITNTKKCLKELMELKTKA 1352 ****************998765 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 7.2 0.00045 0.49 82 167 .. 1313 1395 .. 1270 1409 .. 0.51 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00045 IncA 82 elselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelr.elsdlkeevqelrsele 167 +++ +++ e+ le+ +r+ ++++lk+l e +++ ++++++ sl++++ +l+++++ ++ e +d k+e + +++++ T103483_3 1313 DIQTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAP----ELREECRSLRSRYNQLEERVSAMEdEMNDMKREGKFREKRIK 1395 33333333333333333333333333333333333332222....344444444444444444444444444444455555555544 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 8.0 0.00032 0.35 26 112 .. 1319 1388 .. 1290 1435 .. 0.45 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00032 APG6 26 dayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalklela 112 ++ e+f k+le+ ++ ++++ l+el el+++ el+ee ++l++ ++lee+ +++ +e n++k+e + T103483_3 1319 KEVENFEKNLEECITRI-----------------TNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGK 1388 22222222222222222.................22233333333333333333333333333333333333333333333333322 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 1.5 0.00053 0.58 67 122 .. 1320 1378 .. 1313 1400 .. 0.63 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00053 DUF1664 67 ridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 ++++ +k+l+e++ ++++k +e++e++ + e++e+ +s+++ ++Le++++ +e+ T103483_3 1320 EVENFEKNLEECITRITNTKkclKELMELKTKAPELREECRSLRSRYNQLEERVSAMED 1378 56666666666665555554222355566666666666666666666666666666654 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.5 0.044 48 15 49 .. 1306 1340 .. 1303 1346 .. 0.87 2 ? 6.6 0.6 0.0076 8.2 5 45 .. 1365 1405 .. 1361 1409 .. 0.88 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.044 XhlA 15 nlee.rvdkleekaaeaeekiknleedlkkiesnqk 49 n++e r ++++ k e+e+ knlee + +i+++ k T103483_3 1306 NYSEpR-EDIQTKGKEVENFEKNLEECITRITNTKK 1340 677766.89***********************9977 PP == domain 2 score: 6.6 bits; conditional E-value: 0.0076 XhlA 5 rlerietkldnleervdkleekaaeaeekiknleedlkkie 45 r +++e+++ +e+++++ ++ e++ik +e l +i T103483_3 1365 RYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIW 1405 558899*****************************999985 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 7.6 0.0068 7.4 28 100 .. 1311 1386 .. 1303 1410 .. 0.63 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0068 TPR_MLP1_2 28 qedlekqaeiakeaqqkYer...elvkhaedikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkee 100 +ed++++ +++++ +++ e+ +++ ++ +kel +l++++ el++e ++l+++ +++++ +++ e+++++ k e T103483_3 1311 REDIQTKGKEVENFEKNLEEcitRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKRE 1386 6677777777777777777522234556666777777777777777777777777777777777777766666554 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 12.9 0.019 20 70 134 .. 1324 1400 .. 1232 1416 .. 0.52 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.019 ATG16 70 q............snskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleae 134 +++k +++ +l++k +lree l+ + ++l++r+ ++++e+ + +++ k +e+r+++ e+ T103483_3 1324 FeknleecitritNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQS 1400 02233333334434444445555555555555555555555555555555555555555555555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 973 (0.0596713); expected 326.1 (0.02) Passed bias filter: 337 (0.0206672); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 5673.36 // Query: T164577_1 [L=5369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.37s 00:00:02.12 Elapsed: 00:00:00.77 # Mc/sec: 19947.79 // Query: T164577_2 [L=5369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.35s 00:00:01.86 Elapsed: 00:00:00.72 # Mc/sec: 21333.05 // Query: T164577_3 [L=5369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.37s 00:00:02.21 Elapsed: 00:00:00.83 # Mc/sec: 18505.78 // Query: T018733_1 [L=2429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-61 206.7 37.8 4.4e-36 124.4 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 0.0076 16.1 1.1 0.0076 16.1 1.1 3.0 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.6 15.7 3.9e-32 3.1e-28 3 96 .. 1377 1470 .. 1377 1471 .. 0.98 2 ! 124.4 14.1 5.5e-40 4.4e-36 184 304 .. 1555 1666 .. 1544 1667 .. 0.96 3 ? -7.0 18.9 2 1.6e+04 123 229 .. 1716 1826 .. 1687 1831 .. 0.67 Alignments for each domain: == domain 1 score: 98.6 bits; conditional E-value: 3.9e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018733_1 1377 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1470 599*****************************************************************************************95 PP == domain 2 score: 124.4 bits; conditional E-value: 5.5e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018733_1 1555 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 1643 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018733_1 1644 KLMNECDHLKESLFQYEREKAER 1666 **********************9 PP == domain 3 score: -7.0 bits; conditional E-value: 2 CCDC144C 123 rerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigkq 216 + d+++ ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++q T018733_1 1716 SQFDDFMAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQEQ 1813 44566777788888888888888888888763334677788888887777777666666677777888888888888886665555555554145566 PP CCDC144C 217 esleerlsqlqse 229 + +l ql+++ T018733_1 1814 AEHKKQLEQLNKD 1826 6666777777665 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 1.1 9.3e-07 0.0076 24 94 .. 1557 1626 .. 1553 1627 .. 0.95 2 ? -2.3 0.2 0.46 3.8e+03 59 80 .. 1668 1689 .. 1638 1697 .. 0.52 3 ? -1.1 11.1 0.19 1.5e+03 13 95 .. 1744 1823 .. 1731 1830 .. 0.82 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 9.3e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018733_1 1557 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 1626 68999********************************************************76.9999986 PP == domain 2 score: -2.3 bits; conditional E-value: 0.46 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018733_1 1668 VVVRQLQQEAADSLKKLTMLES 1689 3456666666666666655554 PP == domain 3 score: -1.1 bits; conditional E-value: 0.19 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a++ +++++++ T018733_1 1744 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAEH--KKQLEQL 1823 4444.46789********************************************************99998866..5666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1298 (0.0796026); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.60 # Mc/sec: 11581.59 // Query: T018733_2 [L=2428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-17 61.3 9.6 7.2e-17 61.3 9.6 1.6 2 CCDC144C CCDC144C protein coiled-coil region 4.8e-09 36.4 0.0 4.8e-09 36.4 0.0 2.7 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.6 2.4 1 8.4e+03 28 107 .. 938 966 .. 925 975 .. 0.40 2 ! 61.3 9.6 8.8e-21 7.2e-17 96 185 .. 1469 1556 .. 1456 1558 .. 0.93 Alignments for each domain: == domain 1 score: -4.6 bits; conditional E-value: 1 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018733_2 938 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 966 22222221...................................................133333444444444444433 PP == domain 2 score: 61.3 bits; conditional E-value: 8.8e-21 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018733_2 1469 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 1556 689**********************9554.57..89*****************************************************99 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 2.1 0.11 8.9e+02 25 45 .. 927 947 .. 924 975 .. 0.69 2 ? -4.3 1.2 2 1.6e+04 43 70 .. 1516 1543 .. 1512 1556 .. 0.72 3 ! 36.4 0.0 5.9e-13 4.8e-09 64 107 .. 1893 1935 .. 1889 1937 .. 0.95 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.11 DUF3496 25 snkteLekykqlyleelkvrk 45 n+ eLe+ +++y +e+++++ T018733_2 927 KNREELERKEKQYKKEVEAKQ 947 4789************99875 PP == domain 2 score: -4.3 bits; conditional E-value: 2 DUF3496 43 vrksLsnklnktnerLaevstkllveke 70 +++ L ++l+kt+ + + ++ k+ ++ T018733_2 1516 TNEFLTEQLSKTQIKFNTLKDKFRKKRD 1543 5778889999999888888888876665 PP == domain 3 score: 36.4 bits; conditional E-value: 5.9e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018733_2 1893 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 1935 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.70 # Mc/sec: 9922.99 // Query: T018733_3 [L=2428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-17 61.7 7.5 1.5e-16 60.6 7.5 1.5 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.6 7.5 9.4e-21 1.5e-16 3 69 .. 1833 1898 .. 1832 1900 .. 0.93 Alignments for each domain: == domain 1 score: 60.6 bits; conditional E-value: 9.4e-21 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018733_3 1833 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1898 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.63 # Mc/sec: 11025.55 // Query: T235281_1 [L=1515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 6566.91 // Query: T235281_2 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 6985.96 // Query: T235281_3 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.64 # Mc/sec: 6767.65 // Query: T111710_1 [L=5230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.43s 00:00:02.31 Elapsed: 00:00:00.83 # Mc/sec: 18026.68 // Query: T111710_2 [L=5229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.40s 00:00:02.17 Elapsed: 00:00:00.80 # Mc/sec: 18699.10 // Query: T111710_3 [L=5229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.43s 00:00:02.27 Elapsed: 00:00:00.89 # Mc/sec: 16808.18 // Query: T060427_1 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1556 (0.095425); expected 326.1 (0.02) Passed bias filter: 407 (0.0249601); expected 326.1 (0.02) Passed Vit filter: 233 (0.0142892); expected 16.3 (0.001) Passed Fwd filter: 57 (0.00349565); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.43s 00:00:02.84 Elapsed: 00:00:00.86 # Mc/sec: 6127.50 // Query: T060427_2 [L=1841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1926 (0.118116); expected 326.1 (0.02) Passed bias filter: 483 (0.029621); expected 326.1 (0.02) Passed Vit filter: 331 (0.0202993); expected 16.3 (0.001) Passed Fwd filter: 77 (0.00472219); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.86u 0.44s 00:00:03.30 Elapsed: 00:00:00.92 # Mc/sec: 5724.77 // Query: T060427_3 [L=1841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1777 (0.108978); expected 326.1 (0.02) Passed bias filter: 504 (0.0309089); expected 326.1 (0.02) Passed Vit filter: 352 (0.0215871); expected 16.3 (0.001) Passed Fwd filter: 101 (0.00619404); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.58u 0.50s 00:00:04.08 Elapsed: 00:00:01.06 # Mc/sec: 4968.67 // Query: T071280_1 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 2562.66 // Query: T071280_2 [L=635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 2711.38 // Query: T071280_3 [L=635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.66 # Mc/sec: 2752.47 // Query: T201366_1 [L=3791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.44s 00:00:01.97 Elapsed: 00:00:00.88 # Mc/sec: 12324.33 // Query: T201366_2 [L=3791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.71 # Mc/sec: 15275.22 // Query: T201366_3 [L=3791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.77 # Mc/sec: 14084.94 // Query: T358007_1 [L=2170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 954 (0.0585061); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.72 # Mc/sec: 8622.22 // Query: T358007_2 [L=2170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 831 (0.0509628); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 8622.22 // Query: T358007_3 [L=2170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 896 (0.0549491); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.63 # Mc/sec: 9853.97 // Query: T250118_1 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 7045.40 // Query: T250118_2 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 7045.40 // Query: T250118_3 [L=1452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 6699.88 // Query: T282639_1 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44 # Mc/sec: 2126.12 // Query: T282639_2 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1990.41 // Query: T282639_3 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-08 34.2 2.2 5.8e-08 33.4 2.2 1.4 1 TGF_beta Transforming growth factor beta like domain Domain annotation for each model (and alignments): >> TGF_beta Transforming growth factor beta like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 2.2 3.6e-12 5.8e-08 2 83 .. 250 325 .. 249 327 .] 0.72 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 3.6e-12 TGF_beta 2 eCrlrelyvsfkdlgwddwiiaPkgyeanyCsGsClskeakaeksatnhavlqslvkelkpekkvpkpcCvPtklsslslly 83 C+l++ +v++++ w ++i+aPk+++++yC+G+C + ++e ++++ ++ ++ p+ ++C+Pt ++ +sl+ T282639_3 250 LCHLQDRKVNLHRAAWGECIVAPKTLSFSYCQGTC--PALNSELRHSSFECYKRA----VPTCPWLFQTCRPTMVRLFSLMV 325 6**********************************..333333333444444333....33223447889999888888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.46 # Mc/sec: 2033.68 // Query: T008160_1 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4556.89 // Query: T008160_2 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 4248.33 // Query: T008160_3 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 3982.81 // Query: T034774_1 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-07 32.2 0.1 1.5e-07 31.6 0.1 1.1 1 FRG2 Facioscapulohumeral muscular dystrophy candidate 2 Domain annotation for each model (and alignments): >> FRG2 Facioscapulohumeral muscular dystrophy candidate 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.6 0.1 9.4e-12 1.5e-07 124 177 .. 445 497 .. 422 498 .. 0.87 Alignments for each domain: == domain 1 score: 31.6 bits; conditional E-value: 9.4e-12 FRG2 124 alSeaiyqdlaqvqaqq.khsplteeqlseLa..qLrgpLlaavqtvYtmAnqAaya 177 +Seaiyqdl+q qa q hs lt+eq L+ +g L+aavq++Ytm +q a++ T034774_1 445 GKSEAIYQDLVQTQA-Q*VHSLLTWEQ---LS*lASSGGLCAAVQNFYTMDSQVAWV 497 68*********9876.6669*******...544455899****************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 4097.59 // Query: T034774_2 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 28.9 0.7 1.4e-06 28.5 0.0 1.4 2 FRG2 Facioscapulohumeral muscular dystrophy candidate 2 Domain annotation for each model (and alignments): >> FRG2 Facioscapulohumeral muscular dystrophy candidate 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 0.0 8.3e-11 1.4e-06 77 123 .. 399 445 .. 393 451 .. 0.93 2 ? -3.6 0.3 0.59 9.7e+03 178 183 .. 497 502 .. 496 502 .. 0.93 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 8.3e-11 FRG2 77 sseseetadaserraerrraGrskrrrsrspgdqppplRKsLVtslR 123 ss++e+t+da+++++ r r+G+sk++ s+spgd+ +p+ KsLVts+ T034774_2 399 SSKTEKTCDACHSGSPRVRTGCSKQPISQSPGDHLLPVLKSLVTSMV 445 899*****************************************985 PP == domain 2 score: -3.6 bits; conditional E-value: 0.59 FRG2 178 FPAesW 183 FPAe+W T034774_2 497 FPAEGW 502 ****** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5222.42 // Query: T034774_3 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 4509.44 // Query: T236375_1 [L=2325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 8868.57 // Query: T236375_2 [L=2325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.82 # Mc/sec: 8111.50 // Query: T236375_3 [L=2324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 9234.12 // Query: T046250_1 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 3553.23 // Query: T046250_2 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3830.83 // Query: T046250_3 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 3601.28 // Query: T323254_1 [L=1649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0089 16.1 34.3 0.029 14.5 15.6 5.2 3 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.0 3.8 9e-05 1.5 25 50 .] 326 351 .. 323 351 .. 0.87 2 ! 14.5 15.6 1.8e-06 0.029 2 46 .. 377 424 .. 376 428 .. 0.94 3 ? -0.5 0.2 0.083 1.4e+03 22 48 .. 550 574 .. 546 581 .. 0.56 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 9e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323254_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 2 score: 14.5 bits; conditional E-value: 1.8e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323254_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 3 score: -0.5 bits; conditional E-value: 0.083 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323254_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 7041.06 // Query: T323254_2 [L=1649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.38s 00:00:01.35 Elapsed: 00:00:00.76 # Mc/sec: 6207.25 // Query: T323254_3 [L=1649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-05 23.4 22.3 0.00029 20.9 6.0 8.1 10 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.5 1 1.6e+04 35 48 .. 201 214 .. 199 214 .. 0.80 2 ? -3.1 0.2 0.54 8.9e+03 21 47 .. 248 274 .. 247 276 .. 0.81 3 ? 0.9 1.0 0.031 5.1e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 20.9 6.0 1.8e-08 0.00029 26 50 .] 357 381 .. 336 381 .. 0.82 5 ! 18.4 8.3 1.1e-07 0.0017 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? -0.4 2.5 0.077 1.3e+03 2 14 .. 431 446 .. 430 462 .. 0.73 7 ? -2.9 0.1 0.45 7.4e+03 24 38 .. 584 598 .. 578 611 .. 0.63 8 ? 0.2 0.2 0.049 8e+02 6 14 .. 790 808 .. 788 837 .. 0.64 9 ? -3.1 0.1 0.54 8.8e+03 37 47 .. 1024 1034 .. 1012 1034 .. 0.73 10 ? -3.5 0.2 0.73 1.2e+04 7 25 .. 1108 1125 .. 1103 1126 .. 0.78 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323254_3 201 GPGRPTCSSSRPTS 214 78888888889987 PP == domain 2 score: -3.1 bits; conditional E-value: 0.54 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 + r++a ++ A++ p l ++L + s T323254_3 248 CHRRAGAEPGEATVRPDLGLGSLASGS 274 77799999999**99999888887764 PP == domain 3 score: 0.9 bits; conditional E-value: 0.031 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323254_3 324 PGLCLPHGGLCRPSC 338 345556667777755 PP == domain 4 score: 20.9 bits; conditional E-value: 1.8e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323254_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 18.4 bits; conditional E-value: 1.1e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323254_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: -0.4 bits; conditional E-value: 0.077 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323254_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -2.9 bits; conditional E-value: 0.45 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323254_3 584 RGSRRPLSAWQGPVR 598 666666666666665 PP == domain 8 score: 0.2 bits; conditional E-value: 0.049 DUF4705 6 asrrpLqa..........p 14 a+rr+Lq+ p T323254_3 790 AGRRRLQDdlglqrspggP 808 7899999844443333321 PP == domain 9 score: -3.1 bits; conditional E-value: 0.54 DUF4705 37 klppagLsrPs 47 ++p++gL rP+ T323254_3 1024 ERPELGLGRPT 1034 56888999995 PP == domain 10 score: -3.5 bits; conditional E-value: 0.73 DUF4705 7 srrpLqapaslqasglsrp 25 +r+ L p++l+ g+ p T323254_3 1108 GRQELG-PQRLPRAGSIAP 1125 678888.999999887655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 6644.38 // Query: T165708_1 [L=928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 4022.50 // Query: T165708_2 [L=927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 4494.90 // Query: T165708_3 [L=927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 5412.22 // Query: T173435_1 [L=5988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:00.77 # Mc/sec: 22247.60 // Query: T173435_2 [L=5988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.43s 00:00:02.30 Elapsed: 00:00:00.73 # Mc/sec: 23466.64 // Query: T173435_3 [L=5988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.48s 00:00:02.29 Elapsed: 00:00:00.81 # Mc/sec: 21148.95 // Query: T045959_1 [L=979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-18 64.7 0.0 1.8e-17 63.3 0.0 1.6 1 DDE_1 DDE superfamily endonuclease 9.9e-09 35.0 0.0 1.9e-08 34.1 0.0 1.5 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.3 0.0 2.2e-21 1.8e-17 1 131 [. 542 672 .. 542 677 .. 0.89 Alignments for each domain: == domain 1 score: 63.3 bits; conditional E-value: 2.2e-21 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyksnrkawltssifeeW...Lekvfdkrve..kaekrkvlLllddsrshetvelse 95 k++ltvl canaag++k+k+ vig + +pr k ++l+v+ +++ka++t ++f+ L +++ +++ k+lL ld+ +++ e T045959_1 542 KQKLTVLECANAAGTHKIKLAVIGNSLYPRCLKG---VHNLPVHCYAHKKASVTGNLFQLV**aLCASSMSSLQtgLEDNCKILLFLDNCSAQPPPEH-- 636 689*******************************...99*******************97444464555555556789****************5555.. PP DDE_1 96 celqniklvflPasstsllqPldqgvvselKarYrr 131 +++n + + +P+s+ts++qP+dqg+++++K++Y++ T045959_1 637 LAKSNAFGIDFPPSVTSVIQPCDQGILHAVKSKYKQ 672 5*********************************97 PP >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.0 2.3e-12 1.9e-08 1 63 [. 412 472 .. 412 475 .. 0.92 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 2.3e-12 THHHHHHHHHHHHHHC.CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTSXX CS HTH_Tnp_Tc5 1 spelEkaLleWirqlrergapitgelirekAqelaslaadpkepdfkaSkgWldrFkkRhgik 63 +++l+ +L+eW+rq+r + p+tg l+ ++A+ ++ +++ e+ S gWl++Fkk +gik T045959_1 412 NEDLDPVLIEWVRQQRSKDTPLTGLLVVKQARIYH--EELNFEGECEYSGGWLQKFKKCLGIK 472 579999****************************6..4577799****************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 4308.85 // Query: T045959_2 [L=979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00017 21.0 0.2 0.00034 20.1 0.2 1.5 1 CENP-B_N CENP-B N-terminal DNA-binding domain 0.0029 17.1 1.1 0.0071 15.8 0.2 1.9 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.2 4.1e-08 0.00034 1 45 [. 341 385 .. 339 387 .. 0.91 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 4.1e-08 SSSSSS--HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHHHHC CS CENP-B_N 1 rkkRrsLTlreKievIqrleegeSkaelarrfnvpestlsdilkn 45 ++k sL +K+e q+l+ g+S++ l +++ + +t++d +k+ T045959_2 341 KRKHLSLSISQKVELLQKLDGGMSVRCLTEEYGMGTTTIYDLKKQ 385 5666788899*******************************9985 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.097 7.9e+02 56 68 .. 593 605 .. 592 607 .. 0.89 2 ! 15.8 0.2 8.7e-07 0.0071 139 176 .] 682 719 .. 672 719 .. 0.86 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.097 DDE_1 56 sifeeWLekvfdk 68 +if++W++++f++ T045959_2 593 EIFSNWFDRHFVP 605 79*********98 PP == domain 2 score: 15.8 bits; conditional E-value: 8.7e-07 DDE_1 139 alqnrlskeqkkltllnalkfikkAwnavsketIksaw 176 + ++++ k+++l++a+ ++ Awn+v k+t+++aw T045959_2 682 NRGLKIQDILKEFNLKDAIFTVANAWNDVDKSTLTNAW 719 55566777899**************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4308.85 // Query: T045959_3 [L=978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 4663.15 // Query: T131217_1 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 2850.79 // Query: T131217_2 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 2754.15 // Query: T131217_3 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-39 135.7 0.0 1.6e-39 135.0 0.0 1.3 1 RhoGAP RhoGAP domain Domain annotation for each model (and alignments): >> RhoGAP RhoGAP domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.0 0.0 9.7e-44 1.6e-39 1 149 [. 227 382 .. 227 386 .. 0.95 Alignments for each domain: == domain 1 score: 135.0 bits; conditional E-value: 9.7e-44 -HHHHHHHHHHHHHTTTSTTTTTS---HHHHHHHHHHHHCTCCCCC..CTTTTCHHHHHHHHHHHHHCSSSTTTTGGGHHHHHHHHGSSSHHHHHHHHHH CS RhoGAP 1 PiivekcvefiekrgldtegiyRvsgskarvkelreafesgkavds..dleeedvhavaslLKrfLrelpepLltkelyeelleaaksedeeerlealke 98 P+iv c++ +e+rgl++ g yRv+g++a+v l+e++++g+ + d +++d +++ slLK f+++lpepL+t++ y++++ea +ed++e ++ l++ T131217_3 227 PLIVAACCHIVEARGLESTGFYRVPGNNAVVSSLQEQLNRGPGDINqqDERWQDLNVINSLLKSFFQKLPEPLFTDDKYNDFIEANCIEDAREWMRTLRK 326 99***************************************9987789**************************************************** PP HHC.....TS-HHHHHHHHHHHHHHHHHHCTHHHH---HHHHHHHHHHHHCT-SST CS RhoGAP 99 lle.....kLPkenratLryLlehLkrvaenskenkMtaknLaivfgPtLlrpkse 149 l++ + + ++tL++L+ hLk++a++s++nkM+++nLa+vfg tL+r++++ T131217_3 327 LVRrerccQARGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGRTLVRTSED 382 *99887767778899*************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 2389.63 // Query: T172005_1 [L=482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2757.84 // Query: T172005_2 [L=481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.67 # Mc/sec: 2053.82 // Query: T172005_3 [L=481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-13 50.7 0.4 2e-13 49.9 0.4 1.4 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 0.4 1.2e-17 2e-13 2 82 .. 207 286 .. 206 288 .. 0.91 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 1.2e-17 Gag_p10 2 kelFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirev 82 +++F k +++Llk ++++++l+k++ +++ cPWFp++Gtldle W+++ lk + +eq + ++vl +w+l +v T172005_3 207 QKVFFKTVQHLLKVIQCTIESEALHKLMFLIRQECPWFPDQGTLDLELWEQADCCLK-RGFEQVHFTNVTVLITWSLACSV 286 789*****************************************************9.88888888888888889876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2219.45 // Query: T221967_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:00.79 # Mc/sec: 9647.15 // Query: T221967_2 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.77 # Mc/sec: 9897.73 // Query: T221967_3 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.63 # Mc/sec: 12097.22 // Query: T119496_1 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.71 # Mc/sec: 3606.26 // Query: T119496_2 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 4572.22 // Query: T119496_3 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 4197.45 // Query: T002441_1 [L=3471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.42s 00:00:01.72 Elapsed: 00:00:00.79 # Mc/sec: 12569.55 // Query: T002441_2 [L=3470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 14181.54 // Query: T002441_3 [L=3470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.83 # Mc/sec: 11960.34 // Query: T381766_1 [L=202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-06 28.2 0.1 3.2e-06 27.7 0.1 1.2 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 0.1 2e-10 3.2e-06 34 99 .. 82 146 .. 68 155 .. 0.90 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 2e-10 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381766_1 82 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 146 579***********************************************99987.7777777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 947.36 // Query: T381766_2 [L=201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 833.37 // Query: T381766_3 [L=201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 78 (0.00478352); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.72 # Mc/sec: 798.65 // Query: T316473_1 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.45s 00:00:02.14 Elapsed: 00:00:00.85 # Mc/sec: 14371.46 // Query: T316473_2 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.36s 00:00:01.81 Elapsed: 00:00:00.80 # Mc/sec: 15269.68 // Query: T316473_3 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.39s 00:00:01.96 Elapsed: 00:00:00.71 # Mc/sec: 17205.27 // Query: T081035_1 [L=805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.84 8.2 13.2 1.1 7.8 13.2 1.1 1 SAPS SIT4 phosphatase-associated protein 9 4.8 27.4 14 4.2 27.4 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> SAPS SIT4 phosphatase-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 13.2 0.00014 1.1 248 343 .. 42 140 .. 29 205 .. 0.40 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00014 SAPS 248 kerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakd.......enkesdesesdtaeesseededdasseesalaeetee 340 +er ++rer +ee +++e+ e +++k++++ +e +++ + + ee+k++++ e++ ++ + +++++e ++ ++++e++ + +++ + T081035_1 42 EERKKERERRREERGRKKEEREKERRRKKKDKEKRKEGRNKERGKKEREEEKKERKrkkerkrEKERKERKVRKEEKERKK----KEKKERKKERKKERK 137 344445555444442222222222222222222222222222222222222222221111111111111111111111111....122222222222222 PP SAPS 341 klr 343 k r T081035_1 138 KER 140 222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 27.4 0.0017 14 234 314 .. 52 135 .. 31 166 .. 0.32 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0017 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassse...seeeeeeesaeaeseaeesseekeeeessesseeeeeeeeee 314 ++++ +++e+++ke++ ++++ke+++e +++e+ ++++e +e+++++e++++++++e++ +++e+e+++++++e+++e+++e T081035_1 52 REERGRKKEEREKERRRKKKDKEKRKEGRNKERGKKEREeekKERKRKKERKREKERKERKVRKEEKERKKKEKKERKKERKKE 135 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2364 (0.144977); expected 326.1 (0.02) Passed bias filter: 765 (0.0469152); expected 326.1 (0.02) Passed Vit filter: 475 (0.0291304); expected 16.3 (0.001) Passed Fwd filter: 124 (0.00760456); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.35u 0.44s 00:00:02.79 Elapsed: 00:00:00.87 # Mc/sec: 2647.09 // Query: T081035_2 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1994 (0.122286); expected 326.1 (0.02) Passed bias filter: 512 (0.0313995); expected 326.1 (0.02) Passed Vit filter: 281 (0.0172329); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.39s 00:00:01.98 Elapsed: 00:00:00.84 # Mc/sec: 2738.22 // Query: T081035_3 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2246 (0.137741); expected 326.1 (0.02) Passed bias filter: 697 (0.042745); expected 326.1 (0.02) Passed Vit filter: 461 (0.0282718); expected 16.3 (0.001) Passed Fwd filter: 122 (0.00748191); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.36u 0.49s 00:00:02.84 Elapsed: 00:00:00.90 # Mc/sec: 2555.67 // Query: T141053_1 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.68 # Mc/sec: 2351.77 // Query: T141053_2 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 2579.36 // Query: T141053_3 [L=558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 2660.57 // Query: T211109_1 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 5124.83 // Query: T211109_2 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 5404.37 // Query: T211109_3 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 7.8 105.0 0.38 10.7 38.4 3.8 4 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.5 0.85 1.4e+04 66 77 .. 365 376 .. 363 379 .. 0.35 2 ? 8.1 38.4 0.00015 2.5 8 97 .. 788 877 .. 783 878 .. 0.88 3 ? 10.7 38.4 2.4e-05 0.38 2 98 .. 870 966 .. 869 968 .. 0.94 4 ? 8.3 38.1 0.00013 2.2 2 98 .. 903 1000 .. 903 1002 .. 0.95 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.85 Mucin-like 66 stpsssygeppa 77 +tps ++++ p+ T211109_3 365 RTPSRDSSTCPT 376 333333333333 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00015 Mucin-like 8 qppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 +p++sps + ps++Ps+ t+ps++ps + p+++ps +t p+++ps t p++ ps ++p+++ps t p+++ps t p T211109_3 788 GPSHSPSPTWTRPSHSPSPTWTQPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRP 877 688999999999999999999999999999999999999999999999999999999999999999999999999999999999777766 PP == domain 3 score: 10.7 bits; conditional E-value: 2.4e-05 Mucin-like 2 psssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 ps+ t p++sps + ps++Ps+ t ps++ps + p+++ps +t p+++ps t p++ ps ++p+++ps t p+++ps t p+ T211109_3 870 PSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSRTWTRPSHSPSPTWTRPSHSPSRIWTRPS 966 7888899**********************************************************************************98888776 PP == domain 4 score: 8.3 bits; conditional E-value: 0.00013 Mucin-like 2 psssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprdpsssytap 97 ps+ t p++sps + ps++Ps+ t ps++ps + p+++ps +t p+++ps t p++ ps ++p+++ps t p+++pss t+p T211109_3 903 PSPTWTRPSHSPSPTWTRPSHSPSPTWTRPSHSPSRTWTRPSHSPSPTWTRPSHSPSRIWTRPSHsSPSPTWTRPSHSPSPTWTRPSHSPSSIWTQP 999 6777899********************************************************9878899*************************99 PP Mucin-like 98 p 98 + T211109_3 1000 S 1000 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 5033.12 // Query: T229257_1 [L=2316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 10861.77 // Query: T229257_2 [L=2316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 10686.58 // Query: T229257_3 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 14.4 0.3 0.028 14.4 0.3 2.1 2 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.3 1.7e-06 0.028 4 29 .. 871 896 .. 870 899 .. 0.92 2 ? -4.7 1.7 1 1.6e+04 37 49 .. 2159 2171 .. 2156 2172 .. 0.82 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.7e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229257_3 871 VWGASCPAPHNPCRLQLELCGPCQKR 896 5**********************976 PP == domain 2 score: -4.7 bits; conditional E-value: 1 Toxin_13 37 caahcivqktsck 49 a c v+k++c+ T229257_3 2159 VEACCCVRKEECN 2171 5689********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 10681.97 // Query: T222286_1 [L=1585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.59 # Mc/sec: 7685.45 // Query: T222286_2 [L=1585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7313.57 // Query: T222286_3 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 7552.59 // Query: T338867_1 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 693 (0.0424997); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 3967.64 // Query: T338867_2 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.075 11.9 7.8 0.32 9.8 7.7 1.9 2 DuoxA Dual oxidase maturation factor 0.23 11.6 3.7 0.64 10.1 3.7 1.7 1 Glycophorin_A Glycophorin A 3.5 6.8 5.4 5.3 6.2 5.4 1.2 1 DUF4191 Domain of unknown function (DUF4191) Domain annotation for each model (and alignments): >> DuoxA Dual oxidase maturation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.091 4.9e+02 35 73 .. 11 49 .. 11 54 .. 0.90 2 ? 9.8 7.7 6e-05 0.32 14 70 .. 682 735 .. 672 765 .. 0.82 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.091 DuoxA 35 GirgkerlftlvrvllslfigavilvvnfgseWevgevk 73 G r+ er+ rv+l l + a + + g+ W++g+ + T338867_2 11 GNRSSERISNWPRVTLLLNVYAYEMQSLQGTGWQSGSPT 49 67999*****************************99865 PP == domain 2 score: 9.8 bits; conditional E-value: 6e-05 DuoxA 14 sliiiilvflilavsfllIlPGirgkerlftlvrvllslfigavilvvnfgseWevg 70 + i+ii++f+i+ + l Il + ++t++ ++++++ig++i+vv f s+W+++ T338867_2 682 HHITIIIIFIIITIIILTILIIVF---IITTITIITTTITIGTIIIVVIFLSSWSQS 735 456777777777777777775555...56788889999****************875 PP >> Glycophorin_A Glycophorin A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 3.7 0.00012 0.64 49 84 .. 673 709 .. 640 716 .. 0.80 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00012 XSSSSSSS-TTHHH.HHHHHHHHHHHHHHHHHHHHHT CS Glycophorin_A 49 eqlvhdFselvitl.iifgvmAgvigtillisYlirR 84 ++++h + it iif ++ +i+til+i ++i T338867_2 673 HHYHHYHRHHHITIiIIFIIITIIILTILIIVFIITT 709 56777777777765167899999**********9976 PP >> DUF4191 Domain of unknown function (DUF4191) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 5.4 0.00097 5.3 23 70 .. 682 729 .. 666 736 .. 0.67 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00097 DUF4191 23 kkllwlllaaflvvvvvfvvlglllgslilllilgillgllvalivlt 70 ++++ +++ +++ ++++++++ +++ ++i+++ + i +g+++ ++++ T338867_2 682 HHITIIIIFIIITIIILTILIIVFIITTITIITTTITIGTIIIVVIFL 729 33444444445555555555555556899999*******999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1704 (0.104501); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.66 # Mc/sec: 3667.06 // Query: T338867_3 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1600 (0.0981234); expected 326.1 (0.02) Passed bias filter: 448 (0.0274745); expected 326.1 (0.02) Passed Vit filter: 266 (0.016313); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.43s 00:00:01.91 Elapsed: 00:00:00.73 # Mc/sec: 3315.43 // Query: T164579_1 [L=7201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.40s 00:00:02.06 Elapsed: 00:00:00.73 # Mc/sec: 28220.32 // Query: T164579_2 [L=7201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.40s 00:00:02.00 Elapsed: 00:00:00.72 # Mc/sec: 28612.27 // Query: T164579_3 [L=7201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.38s 00:00:02.00 Elapsed: 00:00:00.71 # Mc/sec: 29015.26 // Query: T368670_1 [L=1577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 7395.95 // Query: T368670_2 [L=1577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 6634.60 // Query: T368670_3 [L=1577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 6634.60 // Query: T297826_1 [L=4878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.37s 00:00:02.08 Elapsed: 00:00:00.90 # Mc/sec: 15505.70 // Query: T297826_2 [L=4878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.36s 00:00:01.96 Elapsed: 00:00:00.66 # Mc/sec: 21144.13 // Query: T297826_3 [L=4878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00025 20.5 0.0 0.00042 19.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0074 15.7 0.0 0.014 14.8 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 5.1e-08 0.00042 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 5.1e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297826_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 1.7e-06 0.014 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.7e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297826_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.76u 0.40s 00:00:02.16 Elapsed: 00:00:00.87 # Mc/sec: 16040.38 // Query: T368348_1 [L=376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.59 # Mc/sec: 1823.17 // Query: T368348_2 [L=376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.50 # Mc/sec: 2151.34 // Query: T368348_3 [L=376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.53 # Mc/sec: 2029.57 // Query: T263710_1 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-35 122.3 0.5 2.9e-35 121.7 0.5 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 121.7 0.5 1.8e-39 2.9e-35 1 159 [. 2069 2238 .. 2069 2244 .. 0.94 Alignments for each domain: == domain 1 score: 121.7 bits; conditional E-value: 1.8e-39 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgr....stldaveellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a++++++++kl++++q+gf pg ++++++++++++++ k k+++++++D +kaFd+++ ++ l T263710_1 2069 IPKPGrdttkKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGM*gwfNICKSINVIQHINRTKDKNHMIISIDAEKAFDKIRQPFML 2166 899999999999*****************************************44444888888******999************************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra..k 159 +++++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG+ lSPllfn++++ l r +r++ k T263710_1 2167 KTFNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCLLSPLLFNIVLEVLARAIRQEKeiK 2238 ********************************99********************************975444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.65 # Mc/sec: 11931.86 // Query: T263710_2 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 31.1 0.0 2.4e-07 30.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 1.5e-11 2.4e-07 159 222 .] 2244 2324 .. 2229 2324 .. 0.87 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 1.5e-11 ...TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aD ++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T263710_2 2244 EEVKLSLFADHMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSElpftvASKRIKYLGIQL 2324 5899**************6677***************************99999888877761156679*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.64 # Mc/sec: 12118.30 // Query: T263710_3 [L=2710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.78 # Mc/sec: 9939.55 // Query: T325800_1 [L=2126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 8331.68 // Query: T325800_2 [L=2126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.78 # Mc/sec: 7797.60 // Query: T325800_3 [L=2125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 8327.76 // Query: T238784_1 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 4706.27 // Query: T238784_2 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 5303.89 // Query: T238784_3 [L=1167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-09 34.4 2.0 4.1e-08 32.3 2.0 1.9 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.3 2.0 2.5e-12 4.1e-08 333 487 .. 412 556 .. 348 605 .. 0.72 Alignments for each domain: == domain 1 score: 32.3 bits; conditional E-value: 2.5e-12 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX..XXX...XXXXXXXXXXXXXXXXXXXXXXXXXXHHHH CS TLV_coat 333 ylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge....yiyaidepatR..vkRepvaltlallLgGLgiaagvgtGttglvstqqf 426 + apngt ++c+ +l + l+ + + C l + + ++ y+++ +++tR v R+ l + + vg Gt +q++ T238784_3 412 NWYAPNGTQWLCSPNLW----PWLPSGWLGCCTLGIPWAQGRWVKTMevypYLPHVVNQGTRaiVHRN-DHLPTIFMP-------SVGLGT----VIQHI 495 45578888888887777....67788888888888777776655554455677777777777332452.223333333.......223333....35667 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS------ CS TLV_coat 427 kkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFya 487 + L + + ++ +sIs ++ ++ + e +lQNR LD+L++ eGG Ca +k eCC y+ T238784_3 496 EALANFTQRALNDSLQSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIKTECCVYI 556 77777777777777899*******************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 4838.53 // Query: T374590_1 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-16 58.1 0.0 1.2e-15 57.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.2e-07 29.3 3.8 0.0033 16.1 2.5 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 0.055 13.5 0.0 0.094 12.8 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.5 0.0 2.3e-19 1.2e-15 67 206 .. 19 139 .. 12 150 .. 0.91 Alignments for each domain: == domain 1 score: 57.5 bits; conditional E-value: 2.3e-19 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEEC CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrY 166 + +++ lDlk+aF+s++l+ +++kl+af+ ++ +s + +++y++++lpqG+++SP++f ++ + l+++ +r g +ll+Y T374590_1 19 EDSWFTCLDLKNAFFSIRLSPESQKLFAFQWEDL-----ES--------------AVTTQYTWTRLPQGFKNSPTIFREALARDLQKIPTRDLGFVLLQY 99 568*****************************44.....33..............449****************************************** PP TTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 167 aDDililskskeelqelleaveewlkesglkinpeKtklv 206 +D +l+ + + + ++++ +l+++++k++++ +++ T374590_1 100 VDNFLLGHPMAVMCAKGMDTLLWHLEDYRYKVSKKEAQIC 139 ********************************99877766 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.0 8.1e-06 0.044 330 393 .. 705 766 .. 687 772 .. 0.76 2 ! 16.1 2.5 6e-07 0.0033 445 559 .. 829 947 .. 812 949 .. 0.76 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 8.1e-06 XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXX CS TLV_coat 330 gseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge.......yiyaidepatRvkR 393 ++ +ap+g +++c + +t+l+++++++Cv ++ P + l + + ++ya ++ kR T374590_1 705 SHQDWMAPAGLYWICRHRA----YTQLPDQWAGSCVIGTIKPSFFLLPIKtgdllgfPVYA-----SQEKR 766 455678*********8654....6*********************9998877444444444.....44444 PP == domain 2 score: 16.1 bits; conditional E-value: 6e-07 HHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HH.....HHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XX CS TLV_coat 445 skleksltslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksg.....ivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgp 538 + l ++ t++ + + QNR LD L + eGG+C + +CC d g ivrd + kL + q ++ l f +l + + tl+ ++ + T374590_1 829 TLLAQQETQMRNAIYQNRLALDYLLAAEGGVCEKFNlTKCCLQRDDQGqvvknIVRD-MTKLAHVPMQVWHRFDPGSL-FGKWLPALGGFKTLIIGMIMV 926 556677778888899******************998679****99864322227776.89999999999999998888.688888888888888555555 PP XXXXXXXXXXXXXXXXXXXXX CS TLV_coat 539 LlllLLiLllGPcilnrLvql 559 L + +L+ ++ P+ l+ L + T374590_1 927 LGTCMLLPCMLPIFLQLLRSF 947 555566666666666666665 PP >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 1.7e-05 0.094 25 106 .. 823 899 .. 806 902 .. 0.80 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.7e-05 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374590_1 823 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 899 469******977.5555555556667788888887774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 5843.03 // Query: T374590_2 [L=1347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6116.73 // Query: T374590_3 [L=1347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 6531.42 // Query: T019898_1 [L=1147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 507 (0.0310928); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 4755.61 // Query: T019898_2 [L=1146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 4683.59 // Query: T019898_3 [L=1146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 4967.44 // Query: T111690_1 [L=5498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.36s 00:00:02.29 Elapsed: 00:00:00.84 # Mc/sec: 18724.81 // Query: T111690_2 [L=5498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.43s 00:00:02.30 Elapsed: 00:00:00.89 # Mc/sec: 17672.86 // Query: T111690_3 [L=5497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.42s 00:00:02.28 Elapsed: 00:00:00.82 # Mc/sec: 19178.03 // Query: T235902_1 [L=465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0024 17.3 0.6 5.6 6.5 0.1 3.6 4 Lambda_Kil Bacteriophage lambda Kil protein Domain annotation for each model (and alignments): >> Lambda_Kil Bacteriophage lambda Kil protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.5 0.1 0.00034 5.6 30 41 .. 138 149 .. 133 150 .. 0.77 2 ? 0.4 0.0 0.029 4.7e+02 34 41 .. 153 160 .. 152 161 .. 0.93 3 ? -2.3 0.0 0.19 3.2e+03 30 41 .. 192 203 .. 187 204 .. 0.73 4 ! 5.8 0.0 0.00057 9.3 26 41 .. 251 266 .. 250 267 .. 0.90 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00034 Lambda_Kil 30 ayKkavlilklR 41 + +++++++R T235902_1 138 QRHGWISMPWFR 149 5667*******9 PP == domain 2 score: 0.4 bits; conditional E-value: 0.029 Lambda_Kil 34 avlilklR 41 +++ +++R T235902_1 153 WISTPWFR 160 *******9 PP == domain 3 score: -2.3 bits; conditional E-value: 0.19 Lambda_Kil 30 ayKkavlilklR 41 + +++ l++R T235902_1 192 QRHGWISTLRFR 203 556799999998 PP == domain 4 score: 5.8 bits; conditional E-value: 0.00057 Lambda_Kil 26 eAvdayKkavlilklR 41 Av + ++++ +++R T235902_1 251 HAVVQRHRWISTPWFR 266 7999999********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 2293.60 // Query: T235902_2 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.017 15.5 0.0 8.4 6.9 0.0 2.3 2 YtxH YtxH-like protein 0.15 11.5 0.1 15 5.1 0.0 3.1 3 Lambda_Kil Bacteriophage lambda Kil protein Domain annotation for each model (and alignments): >> YtxH YtxH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.0 0.0018 14 19 45 .. 154 180 .. 154 218 .. 0.83 2 ? 6.9 0.0 0.001 8.4 19 42 .. 260 283 .. 260 301 .. 0.85 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0018 YtxH 19 APksGketRedlkekaddlkekakell 45 +P+ G+etR dl ++ ++ ++ ++ T235902_2 154 SPRHGSETRVDLHAMVQSTRADLHAVV 180 59*****************99997665 PP == domain 2 score: 6.9 bits; conditional E-value: 0.001 YtxH 19 APksGketRedlkekaddlkekak 42 +P+ G+etR+dl ++ ++ +++ T235902_2 260 SPRHGSETRADLHAVVQSTRADPT 283 59************9999988774 PP >> Lambda_Kil Bacteriophage lambda Kil protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.0018 15 34 41 .. 131 138 .. 128 139 .. 0.91 2 ? -1.0 0.0 0.15 1.2e+03 26 41 .. 177 192 .. 176 193 .. 0.85 3 ? 2.3 0.0 0.014 1.2e+02 30 41 .. 233 244 .. 228 245 .. 0.76 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0018 Lambda_Kil 34 avlilklR 41 +++++++R T235902_2 131 WISMPWFR 138 *******9 PP == domain 2 score: -1.0 bits; conditional E-value: 0.15 Lambda_Kil 26 eAvdayKkavlilklR 41 Av + +++ l++R T235902_2 177 HAVVQRHGWISTLRFR 192 68888899*****999 PP == domain 3 score: 2.3 bits; conditional E-value: 0.014 Lambda_Kil 30 ayKkavlilklR 41 + +++ +++R T235902_2 233 QRHGWISTPWFR 244 5567*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 1981.23 // Query: T235902_3 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 1952.10 // Query: T337534_1 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.81 # Mc/sec: 9800.99 // Query: T337534_2 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.74 # Mc/sec: 10728.11 // Query: T337534_3 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.74 # Mc/sec: 10728.11 // Query: T369032_1 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 5170.53 // Query: T369032_2 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 5404.77 // Query: T369032_3 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 5243.43 // Query: T156679_1 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 7411.75 // Query: T156679_2 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.24s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 7770.38 // Query: T156679_3 [L=1683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.52 # Mc/sec: 9259.19 // Query: T233997_1 [L=6263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 578 (0.0354471); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.44s 00:00:02.87 Elapsed: 00:00:00.81 # Mc/sec: 22120.22 // Query: T233997_2 [L=6263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.09u 0.38s 00:00:02.46 Elapsed: 00:00:00.84 # Mc/sec: 21330.21 // Query: T233997_3 [L=6263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.49s 00:00:02.54 Elapsed: 00:00:00.81 # Mc/sec: 22120.22 // Query: T043652_1 [L=4136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.40s 00:00:02.11 Elapsed: 00:00:00.83 # Mc/sec: 14255.90 // Query: T043652_2 [L=4135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.39s 00:00:02.08 Elapsed: 00:00:00.90 # Mc/sec: 13143.92 // Query: T043652_3 [L=4135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.40s 00:00:02.02 Elapsed: 00:00:00.77 # Mc/sec: 15363.03 // Query: T260465_1 [L=1751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.62 # Mc/sec: 8079.54 // Query: T260465_2 [L=1750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 7702.23 // Query: T260465_3 [L=1750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.59 # Mc/sec: 8485.51 // Query: T256679_1 [L=3928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-27 93.8 0.2 1.4e-26 93.1 0.2 1.2 1 Transposase_22 L1 transposable element 7e-17 61.5 1.8 1e-16 61.0 1.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.1 0.2 1.7e-30 1.4e-26 279 353 .. 2206 2280 .. 2205 2293 .. 0.97 Alignments for each domain: == domain 1 score: 93.1 bits; conditional E-value: 1.7e-30 EEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT CS Transposase_22 279 kPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke 353 kPirltad+saetl+ar++ +++ +l+++++qPr lyPaklsii +G i+ f dk++l+++ +t+P l++llke T256679_1 2206 KPIRLTADFSAETLQARKDRRPIFSLLRQNHYQPRSLYPAKLSIIYEGKIQSFSDKQMLTEFATTKPPLQELLKE 2280 8*************************************************************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.0 1.8 1.2e-20 1e-16 1 86 [. 2828 2922 .. 2828 2923 .. 0.94 Alignments for each domain: == domain 1 score: 61.0 bits; conditional E-value: 1.2e-20 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g +++yR+isl+++d k+lnk++a+r++++++k+++++q+gf p + + +e++++++ k+k+++++++D +kaFd+++++ T256679_1 2828 IPKPGkditkKENYRLISLMNIDAKILNKVLANRIQQHIKKTIHHDQVGFIPEMQGRFNKcksiNEIHHINRIKNKNHMIISIDTEKAFDKIQHP 2922 789999999999****************************************98888777899999****99999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.81 # Mc/sec: 13873.26 // Query: T256679_2 [L=3927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-33 115.6 2.2 3.2e-33 115.0 2.2 1.2 1 Transposase_22 L1 transposable element 5.6e-05 22.5 0.2 0.00012 21.5 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) 0.0072 16.4 0.0 0.06 13.5 0.0 2.1 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 115.0 2.2 5.8e-37 3.2e-33 169 277 .. 2097 2204 .. 2096 2207 .. 0.96 Alignments for each domain: == domain 1 score: 115.0 bits; conditional E-value: 5.8e-37 HHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHH CS Transposase_22 169 rekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnk 261 +ekr+++ eqslq+++d+vk nl++iG +e+e e+ k leni+ iieenfP l+++++++i e +rtP ++ kr+ +rhi++r++kv++k T256679_2 2097 KEKRIRKYEQSLQEVWDYVKPLNLKIIGDPEEE-EKSKSLENIFGGIIEENFPSLARDLDIQILEDQRTPGKFIPKRSLPRHIVIRLSKVKTK 2188 79**************************98865.7899******************************************************* PP HHHHHHHHHHS-EEET CS Transposase_22 262 dkilkavrekGrvtlk 277 ++ilk vr+k ++t+k T256679_2 2189 ERILKIVRQKHQITYK 2204 ***************9 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.2 2.2e-08 0.00012 5 19 .] 3027 3041 .. 3024 3041 .. 0.97 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.2e-08 DUF1725 5 KWMELEnIILSEisQ 19 +WM LE+IILSE++Q T256679_2 3027 TWMRLETIILSEVTQ 3041 9*************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.18 9.6e+02 77 95 .. 678 821 .. 583 842 .. 0.69 2 ! 13.5 0.0 1.1e-05 0.06 15 113 .] 2350 2576 .. 2335 2576 .. 0.65 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.18 E..............................EEE.............................................................. CS x..............................xxx.............................................................. RF Exo_endo_phos 77 l..............................viv.............................................................. 80 + ++v T256679_2 678 Fpavsrwaglfei*yktpeksynfqicpwvmCVVnvky*qfgclrcndffflhqcagseagtsfqrqyisllarplgvheghpnkkgrrqseetkg 773 044444444444444444444444444444433366666666666666666788888888888888888888888888888888888888888888 PP ......EEE-SS...........................-BEEEEEEH CS ......xxxxxx...........................xxxxxxxxx RF Exo_endo_phos 81 ......lGDfNa...........................rlDrilask 95 +G fN+ r+D+ l+s+ T256679_2 774 plnadpCGSFNTrqhegvptgellagylegs*rmpsfpqRIDHGLVSD 821 8888889********************************667666665 PP == domain 2 score: 13.5 bits; conditional E-value: 1.1e-05 HHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...EEEEEEESSSTTSSEEEEEECSEEEEE............................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF Exo_endo_phos 15 srrsaaladllkaydadvlglqEvdddelsrlplla...dadaskfgtgkgqggvavlsrfpltsl............................ 77 + ++ + a++++++++ + +lqE + ++ +l+ + + +g++k++++v + s ++ + T256679_2 2350 PLKTYRTAEWIRTHQPTICCLQEPNLTYRDSHKLKVkgwKKALHANGHQKRAEAVILTSDKTNLEAtavkrdkeghyvmvkglvqqenitilni 2443 45566889***************88887777766669984444555555555555444444442223344445555555555555556666677 PP .........................EEEEEE-SS......................-B.................................... CS .........................xxxxxxxxx......................xx.................................... RF Exo_endo_phos 78 .........................vivlGDfNa......................rl.................................... 88 i++GDf + +l T256679_2 2444 napntgapkfikqllidlkteidsnTIIVGDFSTpltaldrssrekvnkgtmdlsyTLeqtdltdiyrtfhptttectfysrvhgtfskinrmi 2537 7777777777777777777777777*********666666666665555555555500555555555555555555555555577777777778 PP .............EEEEEEH.HHHTTEEEEEEECCHSSB CS .............xxxxxxx.xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 89 .............Drilask.elatersgvldeplaSDH 113 D+++ +k +l++++ + + + SDH T256679_2 2538 fmisi**aii**iDHMISHKmSLNKFKKIETILSTLSDH 2576 888888888888899998888888777777776666888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:00.91 # Mc/sec: 12345.58 // Query: T256679_3 [L=3927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.3 0.0 1.9e-06 27.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.26 11.5 2.0 0.53 10.6 2.0 1.4 1 UPF0184 Uncharacterised protein family (UPF0184) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 2.4e-10 1.9e-06 102 173 .. 2937 3017 .. 2934 3020 .. 0.92 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 2.4e-10 ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEE CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDilil 173 +n+ik+++ ++++++ +n e+ + ++ +g+ qGs+lS llfn++++ l r +r++ k+ +l+++a +l++ T256679_3 2937 LNVIKAIYDNPKANIILNAEKLKAFPLRTGTGQGSPLSLLLFNIVLEVLARAIRQEKeikgiqigkKEAKLSLFAENMLVY 3017 689*****************99*********************************99999999999999999999888877 PP >> UPF0184 Uncharacterised protein family (UPF0184) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 2.0 6.5e-05 0.53 30 67 .. 2061 2098 .. 2049 2100 .. 0.89 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 6.5e-05 UPF0184 30 ainsmLDqinsaLDalEernDdlnskLrELlesnRqiR 67 ++ + L+ ++ ++++Eern +l+ k+ EL +sn+ + T256679_3 2061 EMQNVLESLSNRIEQVEERNSELKDKVLELTQSNKTKK 2098 46799*****************************9766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 503 (0.0308475); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 19041.49 // Query: T106641_1 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-21 76.3 2.8 2.1e-21 76.3 2.8 3.6 4 ADAM_CR ADAM cysteine-rich 2.7e-16 60.0 26.2 2.7e-16 60.0 26.2 3.3 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -12.3 10.1 2 1.6e+04 15 15 .. 963 963 .. 934 992 .. 0.62 2 ! 76.3 2.8 2.6e-25 2.1e-21 1 109 [. 1017 1133 .. 1017 1137 .. 0.86 3 ? -6.1 10.7 2 1.6e+04 1 20 [. 1141 1161 .. 1141 1184 .. 0.88 4 ? -4.5 4.3 2 1.6e+04 4 27 .. 1165 1188 .. 1161 1194 .. 0.63 Alignments for each domain: == domain 1 score: -12.3 bits; conditional E-value: 2 ADAM_CR 15 C 15 C T106641_1 963 C 963 2 PP == domain 2 score: 76.3 bits; conditional E-value: 2.6e-25 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatvi 90 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ T106641_1 1017 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNIL 1113 9**************************************999975.4699****98444355699********************9553455559999 PP ADAM_CR 91 qtkiknkeCvgidvh.eedv 109 ++ik+++C+g+++h ++d T106641_1 1114 VHDIKEEKCFGYEAHqGTDL 1133 999999*******9745555 PP == domain 3 score: -6.1 bits; conditional E-value: 2 ADAM_CR 1 dgtpCke.ayCykgkCktrde 20 dg +C +yC+k +C+++++ T106641_1 1141 DGATCGPgSYCLKHNCTSYQD 1161 899**999********99865 PP == domain 4 score: -4.5 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106641_1 1165 ECDLKTCnYKGVCNNK-KHCHCLHG 1188 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.0 26.2 3.3e-20 2.7e-16 2 76 .] 941 1012 .. 940 1012 .. 0.95 2 ? -2.6 1.4 1.1 9.3e+03 33 52 .. 1021 1039 .. 1015 1057 .. 0.51 3 ? -0.2 8.6 0.21 1.7e+03 29 71 .. 1141 1182 .. 1119 1187 .. 0.76 Alignments for each domain: == domain 1 score: 60.0 bits; conditional E-value: 3.3e-20 Disintegrin 2 egEeCDcGsteeckkdkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 + EeCDcGs ++c +d+CC+ ++C+l+ g+ C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106641_1 941 QREECDCGSLKDCASDRCCE-TSCTLSLGSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 1012 68******************.9*****************.7************6.556***************97 PP == domain 2 score: -2.6 bits; conditional E-value: 1.1 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106641_1 1021 CSAvSVCIRGNCS--DRDMQC 1039 3322333333332..222222 PP == domain 3 score: -0.2 bits; conditional E-value: 0.21 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106641_1 1141 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 1182 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6876.03 // Query: T106641_2 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-16 60.5 0.0 4.5e-16 59.2 0.0 1.6 1 Pep_M12B_propep Reprolysin family propeptide 5.3e-15 55.7 0.5 8.3e-15 55.1 0.5 1.3 1 Reprolysin Reprolysin (M12B) family zinc metalloproteas 0.0062 16.6 0.8 0.01 15.8 0.8 1.2 1 Reprolysin_5 Metallo-peptidase family M12 0.0065 16.9 0.2 0.012 16.0 0.2 1.4 1 Reprolysin_3 Metallo-peptidase family M12B Reprolysin-lik ------ inclusion threshold ------ 0.15 11.6 0.0 0.24 10.9 0.0 1.2 1 Reprolysin_4 Metallo-peptidase family M12B Reprolysin-lik Domain annotation for each model (and alignments): >> Pep_M12B_propep Reprolysin family propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 1.4e-19 4.5e-16 3 125 .. 566 672 .. 559 690 .. 0.86 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 1.4e-19 Pep_M12B_propep 3 viPvrvdeegeflshelkkkrrrRslseeeekeerlsyrlkafgkefhLnLeknsellapgftvetrredgeereespeeeehCyYqGtvrgep 96 viP++v +rR e +++lsy+++++g++++++++++++++ +++ v+t +++g +e+ p + ++CyY +++g p T106641_2 566 VIPRKVP--------------HRRGG-VE--MPDQLSYSMHFRGRRHVIHMKLKKNMMPRHLPVFTNNDQGAMQENYPFVPRDCYYDCYLEGVP 642 4444444..............23333.22..369*********************************999999999999999************ PP Pep_M12B_propep 97 gssvalstCsG.lrGvirteneeYfIePle 125 gs ++l tC G lrG++++++ +Y I+Ple T106641_2 643 GSVATLDTCRGgLRGMLQVDDLTYEIKPLE 672 *********9659****************7 PP >> Reprolysin Reprolysin (M12B) family zinc metalloprotease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.1 0.5 2.6e-18 8.3e-15 4 187 .. 732 910 .. 729 919 .. 0.86 Alignments for each domain: == domain 1 score: 55.1 bits; conditional E-value: 2.6e-18 EEEEEE-HHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEE-SS--SS---SSHHHHHHHHHHHHHHCTTTS-..SEEEEEESS.--STT CS Reprolysin 4 elfivvdkklfkkmgsdveavrqkvlevvnlvnkiykelnirvvLvglEiWsdedkievskdaeetLeeflkwkeellkkrkkhdaaqLlsgk.efekk 101 +l+ v + lf+++ ++ ++ ++v+ + ++ +i+k + ++v + l iW+d+d + + a+ ++ ef +wk +++ +hd+ ++++ + + T106641_2 732 KLHYTVTNGLFMQNP-NMSHIIENVVIINSIIHTIFKPVYLNVYVRVLCIWNDMDIVMYNMPADLVVGEFGSWKYYEWFSQIPHDTSVVFTSN*L-GN- 827 566666777776655.9999*****************************************************************9988876553.33. PP --EEE-TT-TTSTTTSEEEEE--SSSHHHHHHHHHHHHHHHCT---GHHTTS--STTS-BTTST.TTTS---C--HHHHHHHHHHC CS Reprolysin 102 tvGaayvgglCskeksggvaedkkknlealavilaqeLghnlGlthdeekeCkceekgvCiMneeagsssgvkFskcsiedfeqfl 187 + a ++g+C+++ ++ + + +l a++ a+ Lghn+Gl+hd+ +C+c ++++ +M++ + + s+cs e ++ + T106641_2 828 SECYASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHDSV-GCYCFRRTNYLMAP--VPDLNDMMSNCSYEIIQRKF 910 46899********88887777777999999*******************.9****9*******9..66667799****98766655 PP >> Reprolysin_5 Metallo-peptidase family M12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.8 3.2e-06 0.01 140 186 .. 855 890 .. 826 900 .. 0.75 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 3.2e-06 Reprolysin_5 140 atevqvvaHElGHnfGavHDcdsssesqsCslsnstepaggryiMap 186 + v+aH lGHn+G +HD + C ++ ++ +y+Map T106641_2 855 FRGACVTAHALGHNMGLRHDSVG------C-----YCFRRTNYLMAP 890 466789**************994......4.....345699999998 PP >> Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.2 3.6e-06 0.012 81 124 .] 831 874 .. 817 874 .. 0.91 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 3.6e-06 Reprolysin_3 81 lAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfganHt 124 +A + ++cn++++a +++ ++ ga ++aH +GHn+g++H+ T106641_2 831 YASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHD 874 588899*******999999988888999***************7 PP >> Reprolysin_4 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 7.3e-05 0.24 138 193 .. 860 907 .. 852 914 .. 0.85 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 7.3e-05 Reprolysin_4 138 ifAHEiGHtfGaaHdlsdegeglsskteegsgqtIMsyaseasqeafapisirlia 193 + AH GH++G+ Hd + g+ ++ + +++M+++ + +++++++s ++i T106641_2 860 VTAHALGHNMGLRHD--SVGC-----YCFRRTNYLMAPVPDL-NDMMSNCSYEIIQ 907 57************9..4678.....89999*******9876.5899999999984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 6638.10 // Query: T106641_3 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 6752.55 // Query: T075757_1 [L=744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 3941.59 // Query: T075757_2 [L=743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 83 (0.00509015); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 4337.95 // Query: T075757_3 [L=743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 4167.84 // Query: T383210_1 [L=4900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-10 38.7 0.0 1.1e-09 38.1 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 2.6e-05 24.3 0.0 4.2e-05 23.6 0.0 1.3 1 GATase_6 Glutamine amidotransferase domain Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.0 1.4e-13 1.1e-09 42 123 .. 90 172 .. 87 173 .. 0.90 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 1.4e-13 GATase_7 42 Leakghrf..rtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkall 123 L +++++f +tk D e++l+l+++ ++e+++ l+G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se kal+ T383210_1 90 LVQHQFEFeyQTKVDGEIILHLYDK-GGIEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVCSEAKALR 172 555555444499************9.8******************************.************9779*********96 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 5.2e-09 4.2e-05 66 129 .. 97 161 .. 85 167 .. 0.81 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 5.2e-09 GATase_6 66 lafrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgl 129 + ++++D e++l+l+++ G e+++ l+G+faf++ d++++++ l rd + gv+pl+ av+e+g+ T383210_1 97 FEYQTKVDGEIILHLYDKGGiEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGF 161 446789**********9999**************************955.6778888888886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.55 # Mc/sec: 25487.39 // Query: T383210_2 [L=4900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.56 # Mc/sec: 24593.10 // Query: T383210_3 [L=4899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.56 # Mc/sec: 24588.08 // Query: T352944_1 [L=4074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 20447.41 // Query: T352944_2 [L=4073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 20442.39 // Query: T352944_3 [L=4073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.30s 00:00:01.37 Elapsed: 00:00:00.56 # Mc/sec: 20807.43 // Query: T258992_1 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 10960.55 // Query: T258992_2 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 9609.25 // Query: T258992_3 [L=2451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 11309.51 // Query: T294827_1 [L=1756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-22 78.6 0.0 7.6e-22 77.9 0.0 1.3 1 RNase_H RNase H 1e-09 38.5 0.0 1.8e-09 37.7 0.0 1.4 1 rve Integrase core domain 9e-08 32.1 0.1 2.6e-07 30.7 0.1 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.9 0.0 1.4e-25 7.6e-22 5 142 .. 275 416 .. 272 417 .. 0.84 Alignments for each domain: == domain 1 score: 77.9 bits; conditional E-value: 1.4e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk 99 +Y+DGs++ n +ge++ag+ v+ + + +pl++ +++++aEL+A++ aL+ ++++vniy DS+Y++ +++ vh++ k++a +s +k++k T294827_1 275 ELYVDGSSFINpQGERCAGCaVVTLD-DVIEDKPLPHGTSAQKAELIALTRALElR--EGKTVNIYPDSRYAFLTLQ--VHGAlyKEKAL-LNSGGKDIK 368 68*********99999****777766.3466699*******************955..9**************9555..56662144444.5888899*9 PP T.HHHHHHHHHCHCSSEEEEEE-SCC..SSS...CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgH..aGd...pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv ++h++gH a ++gN + D A++aa T294827_1 369 YqQEILQLLEAVWKPQKVAVMHCRGHlqA-StsvSQGNSRTDTEAQKAA 416 889***********************752.246789**********997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.0 3.3e-13 1.8e-09 26 105 .. 555 632 .. 553 635 .. 0.96 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 3.3e-13 rve 26 llvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdn 105 ++v + ++s++i +++++e +a +v+++l r + ++g p+r+ sDng++ ++ +++ ++ lgi+++++++++pq+ T294827_1 555 FTVLVCTYSGWIESYPTRTE-KACEVTRVLLRDLIPRFGL-PLRIGSDNGPASVADLVQRTAKVLGITWKLHATYQPQSS 632 67999***************.*******************.*************************************86 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.1 4.7e-11 2.6e-07 1 36 [. 482 517 .. 482 518 .. 0.98 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 4.7e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCk 36 H++tHlG++ l++ll+r++++ ++ +++++V+++C+ T294827_1 482 HETTHLGQESLEKLLSRYFYISHLPALAKTVARRCT 517 9**********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7387.67 // Query: T294827_2 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 9128.65 // Query: T294827_3 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 8097.99 // Query: T051322_1 [L=4383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 564 (0.0345885); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.43s 00:00:02.33 Elapsed: 00:00:00.81 # Mc/sec: 15480.27 // Query: T051322_2 [L=4383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.40s 00:00:02.10 Elapsed: 00:00:00.79 # Mc/sec: 15872.17 // Query: T051322_3 [L=4383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.67 # Mc/sec: 18714.95 // Query: T110422_1 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 5141.87 // Query: T110422_2 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 6220.00 // Query: T110422_3 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-08 32.4 1.7 8.6e-08 31.5 1.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 1.7 5.3e-12 8.6e-08 1 17 [. 238 254 .. 238 254 .. 0.97 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 5.3e-12 DUF1725 1 kFagKWMELEnIILSEi 17 +Fa++WMELE IILSEi T110422_3 238 SFATTWMELEAIILSEI 254 7***************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 5755.82 // Query: T366636_1 [L=5918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.39s 00:00:02.06 Elapsed: 00:00:00.89 # Mc/sec: 19022.91 // Query: T366636_2 [L=5918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.40s 00:00:02.27 Elapsed: 00:00:00.89 # Mc/sec: 19022.91 // Query: T366636_3 [L=5917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.41s 00:00:02.31 Elapsed: 00:00:00.79 # Mc/sec: 21427.25 // Query: T155660_1 [L=2549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.64 # Mc/sec: 11394.15 // Query: T155660_2 [L=2549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.091 12.3 7.8 0.023 14.2 4.0 2.0 2 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.1 0.21 3.4e+03 2 7 .. 784 789 .. 784 789 .. 0.95 2 ? 14.2 4.0 1.4e-06 0.023 6 27 .] 1568 1589 .. 1565 1589 .. 0.93 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.21 DUF3704 2 LyVGAS 7 L+VGAS T155660_2 784 LPVGAS 789 9****9 PP == domain 2 score: 14.2 bits; conditional E-value: 1.4e-06 DUF3704 6 ASFGYMPksgIAGSSdSimsnF 27 SFG P+sgIAGS +++m nF T155660_2 1568 SSFGCIPRSGIAGSYGNSMFNF 1589 69*****************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.67 # Mc/sec: 10883.96 // Query: T155660_3 [L=2548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-16 59.5 0.0 3e-16 58.9 0.0 1.1 1 PhoPQ_related PhoPQ-activated pathogenicity-related protein Domain annotation for each model (and alignments): >> PhoPQ_related PhoPQ-activated pathogenicity-related protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.9 0.0 1.8e-20 3e-16 218 334 .. 158 276 .. 154 295 .. 0.89 Alignments for each domain: == domain 1 score: 58.9 bits; conditional E-value: 1.8e-20 PhoPQ_related 218 kaYGewslaledYvaegidellktpefkkLlkivDplsYlerl.tipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsnkevvesl 312 + +G s+ ++ +++ + +tp+f++ ++ vDp+ +++++ t p +++ +sgD+ff d t ++++L+g+k+lr +P ++H + +e+ + l T155660_3 158 RCFGGQSACVRALHTLNVTGNKDTPRFQEKIEHVDPFYHMTHYqTKPELLVFGSGDEFFSTDGTMNFYDQLPGRKYLRAIPSAGHAIDFHETNTYL 253 5688899999999999***************************889*****************************************996666665 PP PhoPQ_related 313 .vafvklvaagkelPeleweiee 334 + f+ ++++++e P+++w+ +e T155660_3 254 eIRFFLYLLKEQEFPSISWTKTE 276 37899999***********8765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.73 # Mc/sec: 9985.47 // Query: T068779_1 [L=2357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00081 19.1 9.2 0.0013 18.4 9.2 1.2 1 Coilin_N Coilin N-terminus ------ inclusion threshold ------ 0.066 13.2 3.6 0.13 12.2 3.6 1.5 1 Eapp_C E2F-associated phosphoprotein 0.15 12.1 1.3 0.23 11.4 1.3 1.2 1 DDHD DDHD domain 0.23 11.1 15.3 0.35 10.5 15.3 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 0.81 8.4 20.0 1.1 7.9 20.0 1.1 1 NARP1 NMDA receptor-regulated protein 1 2 6.6 9.8 3 6.0 9.8 1.1 1 Rrn6 RNA polymerase I-specific transcription-initia 3.1 7.0 16.5 5 6.4 16.5 1.2 1 DUF1510 Protein of unknown function (DUF1510) 3.2 7.0 8.0 5.2 6.3 8.0 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 3.6 6.6 12.6 5.3 6.1 12.6 1.1 1 CCDC71L Coiled-coil domain-containing protein 71L 5.8 5.9 10.0 8.8 5.3 10.0 1.1 1 FLO_LFY Floricaula / Leafy protein 5.9 5.4 14.1 8.6 4.9 14.1 1.1 1 Tim54 Inner membrane protein import complex subunit 6 6.4 10.7 9 5.8 10.7 1.1 1 AAA_11 AAA domain 7.8 5.8 17.8 13 5.1 17.8 1.2 1 Sec62 Translocation protein Sec62 Domain annotation for each model (and alignments): >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 9.2 1e-06 0.0013 82 138 .. 585 641 .. 510 643 .. 0.68 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1e-06 Coilin_N 82 tkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 +k++++++e+e+++ + k+ + + +kk+kkr++ ++e++e+++++++k+k ++kkk T068779_1 585 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKK 641 344444444444444444445555555555555555555555555555555555554 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 3.6 0.00011 0.13 76 117 .. 592 648 .. 582 727 .. 0.45 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.00011 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeee...............e 117 ++++e+e++++kk+k+++k++++++++++++eeeeee+++e + T068779_1 592 KEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEkekgrrkkkkqlvrlR 648 333333332222222222222222222222222222222211223344444555550 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 1.3 0.00018 0.23 127 189 .. 582 641 .. 511 671 .. 0.47 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00018 DDHD 127 geeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 +++e++k+ +++k++e+ e++++k++++++++++++++++ee++e ++ke e+ ++++k T068779_1 582 KKKEKEKEMKKEKEEEER----RERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKKK 641 222222222222222211....111111222222222222222222222222222233222222 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 15.3 0.00028 0.35 84 154 .. 579 643 .. 565 665 .. 0.52 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00028 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkke 154 p+lkkk +e +e +ke+eee++ e+ +k+++++++k++k+++ ++k+e+eeee++k+k+k +++kkk+ T068779_1 579 PDLKKKEKE---KEMKKEKEEEERRER-KKRKRRRKKKRKKRRR--RKKEEEEEEEKKKEKEKGRRKKKKQ 643 455666554...344444444444444.4444444444443333..2222333333333333333333333 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 20.0 0.00089 1.1 386 449 .. 581 642 .. 559 651 .. 0.49 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00089 HHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......----- CS NARP1 386 ledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked 449 l+ k+k+ke +ke++++++ + ++rk+ rkk++k++++++kee+e+++k+kek+ + ++kk++ T068779_1 581 LKKKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKE--KGRRKKKK 642 333333333333333333444444444444555554445554444444433333..22222222 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.8 0.0024 3 745 790 .. 593 635 .. 577 685 .. 0.53 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0024 Rrn6 745 sleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsk 790 + e+ee+r+r++rk++++++rk++ r+r+++++++e++++++ k T068779_1 593 EKEEEERRERKKRKRRRKKKRKKR---RRRKKEEEEEEEKKKEKEK 635 111222222222222222222222...2222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 16.5 0.004 5 54 113 .. 583 642 .. 573 660 .. 0.39 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.004 DUF1510 54 seeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevt 113 ++e++k+ kke++ee+ +e k+ + ++++ k+ ++++ee+eek+ke+++ ++++ T068779_1 583 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKK 642 222222223333333333333333333333333333333333333333333333333333 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 8.0 0.0041 5.2 19 74 .. 584 640 .. 558 650 .. 0.40 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0041 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee..kldk 74 e++++ ++ekee+e++e+++ ++ +++++ ++k+ee+e+ee +++e+e + +k T068779_1 584 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEE-KKKEKEkgRRKK 640 222222222222222222222222222222222222222222222.222222122222 PP >> CCDC71L Coiled-coil domain-containing protein 71L # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 12.6 0.0042 5.3 291 349 .. 585 645 .. 545 673 .. 0.59 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0042 CCDC71L 291 akakkikakesvqarterkkqksssetvGqKrkr.aeeakelpakkkar.lvpqsekselg 349 k k++k+ + +++r erkk+k+++++ +Kr+r +e++e +kkk++ ++ +++k++l+ T068779_1 585 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRrKKEEEEEEEKKKEKeKGRRKKKKQLV 645 3455555555555555555555555555444433133333333333333033344444433 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.0 0.007 8.8 163 213 .. 590 640 .. 562 657 .. 0.50 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.007 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS FLO_LFY 163 GGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag 213 + ++ee +rk++k+rr+kk++++++ +++ee+eee ++++e+ + + T068779_1 590 MKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKK 640 333444444445555555544444444444444333333333333322222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 14.1 0.0068 8.6 188 249 .. 576 640 .. 572 653 .. 0.38 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0068 Tim54 188 GPldapeepeeeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeekeeeeeeeekek.kkkv 249 G l +++e+e++ ++e+eeee++e++++++ ++++++++++k+ee+eeee+++ekek ++k+ T068779_1 576 GSLPDLKKKEKEKEMKKEKEEEERRERKKRKRrrKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKK 640 44444444444443333333333333333333112222222222222222222333333223333 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 10.7 0.0072 9 133 195 .. 584 646 .. 569 672 .. 0.64 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0072 AAA_11 133 eleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleeevld 195 ++++ + + +++eee +++k++k ++k+k+k++++r+k ++e +e +ke e+ +++ ++++++ T068779_1 584 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKKQLVR 646 222222222233333334566666666666666666666666666777777776666666654 PP >> Sec62 Translocation protein Sec62 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 17.8 0.01 13 21 100 .. 583 659 .. 577 673 .. 0.40 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.01 Sec62 21 kkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYvW 100 kk+++k+ +k+ke++++++ +k +++ kk++++ r +k++e+e+++kk+ +k+k ++kkk +l ++ +f + e + W T068779_1 583 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKK-EKEKGRRKKKKQLVRLRDLTF--ALENWSW 659 2222222222222222333333333333333333444443333333332.333334444444444444444..4455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1773 (0.108733); expected 326.1 (0.02) Passed bias filter: 820 (0.0502882); expected 326.1 (0.02) Passed Vit filter: 357 (0.0218938); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 3.19u 0.47s 00:00:03.66 Elapsed: 00:00:00.97 # Mc/sec: 6951.52 // Query: T068779_2 [L=2356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.41s 00:00:01.74 Elapsed: 00:00:00.83 # Mc/sec: 8120.62 // Query: T068779_3 [L=2356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 614 (0.0376549); expected 326.1 (0.02) Passed bias filter: 396 (0.0242855); expected 326.1 (0.02) Passed Vit filter: 83 (0.00509015); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.43s 00:00:02.10 Elapsed: 00:00:00.81 # Mc/sec: 8321.13 // Query: T279632_1 [L=1765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-16 59.0 0.4 2.9e-09 36.1 0.0 2.3 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 0.0 1.8e-13 2.9e-09 170 209 .. 827 866 .. 826 875 .. 0.90 2 ! 20.7 0.1 8.9e-09 0.00015 290 319 .. 945 974 .. 929 977 .. 0.89 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 1.8e-13 HHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHH CS Transposase_22 170 ekrkkileqslqviqdtvkrPnlrliGvdesedeqlkkle 209 +kr+k++eqslq i+++vkrP lrliGv+es+ e+ + + T279632_1 827 KKRMKRNEQSLQGIWNYVKRPHLRLIGVPESDGENASNWK 866 699******************************9987655 PP == domain 2 score: 20.7 bits; conditional E-value: 8.9e-09 HHHHHHHHHHHHHHHHH.HTT---EEETTTE CS Transposase_22 290 etlkarrewtdviqilk.ekkfqPrllyPak 319 tl+arrew++++++lk +fq r++yPak T279632_1 945 RTLQARREWGPILNVLK*K-NFQHRISYPAK 974 69**************555.8*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 7425.54 // Query: T279632_2 [L=1765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-08 33.5 6.2 0.0014 17.4 0.0 3.2 3 Transposase_22 L1 transposable element 7.4e-05 22.2 0.3 0.00012 21.5 0.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.0 0.4 3.2e-05 0.26 6 54 .. 691 735 .. 687 742 .. 0.87 2 ! 7.1 0.8 0.00024 1.9 145 168 .. 801 824 .. 801 828 .. 0.93 3 ! 17.4 0.0 1.8e-07 0.0014 270 293 .. 925 948 .. 919 966 .. 0.87 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 3.2e-05 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk 54 + +k +ns+ +++s+P+k+++s P e+++ + f+el + ++++ T279632_2 691 KSQHKKAENSENQNASSPPKDHNSLPGR--EQNWIE--FDELIEVGFRR 735 466899********************99..999985..99***999998 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00024 HHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevke 168 id+ eer+s +ed+++ei+ e k T279632_2 801 IDQAEERISETEDQLNEIKYEDKI 824 799****************99886 PP == domain 3 score: 17.4 bits; conditional E-value: 1.8e-07 HHS-EEETTEEEEEEE---HHHHH CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlk 293 +kG++t kGkP+rltadlsae k T279632_2 925 QKGQLTNKGKPMRLTADLSAEPYK 948 79*******************876 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.3 1.5e-08 0.00012 3 36 .. 1573 1604 .. 1570 1607 .. 0.88 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 1.5e-08 -TT.S-EEE......-THHHHCTB--........ CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlek 36 Kk +++Rpisl+++d+k+lnk++a+r++++++k T279632_2 1573 KK--ENFRPISLMNIDVKILNKILANRIQQHIKK 1604 34..69*************************854 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7317.92 // Query: T279632_3 [L=1765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-32 111.9 7.2 3e-31 108.5 7.2 2.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.5 7.2 1.8e-35 3e-31 214 366 .. 870 1022 .. 870 1024 .. 0.87 Alignments for each domain: == domain 1 score: 108.5 bits; conditional E-value: 1.8e-35 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE.....EEEEE---HHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP.....irltadlsaetlkarrewtdv 301 +ii+e fPnl ++an++iq i+rtP+r++ +ra++rhi +r+tkv++k+ +++a++ k + kG P i l s + +r ++ T279632_3 870 NIIQEIFPNLGRQANIQIQKIQRTPQRYSLRRATPRHIFIRFTKVEMKENMFRAAK-KVSLPTKGSP*d*qqISLQNPTS----Q-KRVGANT 956 59****************************************************97.677888**999994455544444....3.3444455 PP HHH.HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXX CS Transposase_22 302 iqi.lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleq 366 + +ke q ++ + s+i++Gei+ dk++lrd+++trP+l++llke + erk+ +q+ ++ T279632_3 957 QRS*IKEFSTQNFIS--SEKSFISEGEIRSITDKQMLRDFVTTRPTLQELLKEalNIERKNWHQPQQK 1022 555888988888887..678*********************************9999****9999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.62 # Mc/sec: 8144.14 // Query: T337155_1 [L=7098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1714 (0.105115); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.00u 0.62s 00:00:06.62 Elapsed: 00:00:01.28 # Mc/sec: 15864.20 // Query: T337155_2 [L=7098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1437 (0.0881271); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 281 (0.0172329); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.53u 0.61s 00:00:06.14 Elapsed: 00:00:01.20 # Mc/sec: 16921.81 // Query: T337155_3 [L=7097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1559 (0.095609); expected 326.1 (0.02) Passed bias filter: 502 (0.0307862); expected 326.1 (0.02) Passed Vit filter: 406 (0.0248988); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.83u 0.62s 00:00:07.45 Elapsed: 00:00:01.50 # Mc/sec: 13535.54 // Query: T053031_1 [L=1129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5209.48 // Query: T053031_2 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.73 # Mc/sec: 4420.57 // Query: T053031_3 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 4745.61 // Query: T194025_1 [L=2402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.70 # Mc/sec: 9816.73 // Query: T194025_2 [L=2402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 9413.31 // Query: T194025_3 [L=2401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.71 # Mc/sec: 9674.44 // Query: T001137_1 [L=1733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.72 # Mc/sec: 6885.86 // Query: T001137_2 [L=1733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.94 9.7 2.8 2.2 8.5 2.8 1.6 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 2.8 0.00013 2.2 16 51 .. 1536 1571 .. 1536 1579 .. 0.70 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00013 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkas 51 +Y+++Y++I++++ + f + +r Lk s T001137_2 1536 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCS 1571 79*********9988888777666655555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.75 # Mc/sec: 6610.42 // Query: T001137_3 [L=1732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 7991.87 // Query: T082950_1 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 4850.21 // Query: T082950_2 [L=1101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.74 # Mc/sec: 4256.45 // Query: T082950_3 [L=1101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5080.28 // Query: T258997_1 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.42s 00:00:01.65 Elapsed: 00:00:00.74 # Mc/sec: 11021.93 // Query: T258997_2 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.69 # Mc/sec: 11820.62 // Query: T258997_3 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.4 6.6 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00063 10 6 41 .. 1860 1895 .. 1846 1906 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00063 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258997_3 1860 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1895 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.74 # Mc/sec: 11018.06 // Query: T337125_1 [L=3269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.87 # Mc/sec: 10749.49 // Query: T337125_2 [L=3268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.64 # Mc/sec: 14608.11 // Query: T337125_3 [L=3268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.29s 00:00:01.38 Elapsed: 00:00:00.63 # Mc/sec: 14839.99 // Query: T080936_1 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.55 # Mc/sec: 3308.16 // Query: T080936_2 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.55 # Mc/sec: 3308.16 // Query: T080936_3 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-88 296.0 18.4 1.6e-87 293.7 18.4 1.9 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.037 14.5 3.6 0.096 13.2 3.6 1.7 1 Adaptin_binding Alpha and gamma adaptin binding protein p34 0.13 12.4 3.9 6.5 7.0 0.7 2.4 2 Sec3_C_2 Sec3 exocyst complex subunit 0.21 10.5 2.4 0.3 9.9 2.4 1.1 1 ArAE_2_N Putative ER transporter, 6TM, N-terminal 0.23 11.9 9.7 0.2 12.1 6.0 2.5 2 Syntaxin-6_N Syntaxin 6, N-terminal 4.8 7.3 7.7 1.2 9.2 2.3 2.5 2 XhlA Haemolysin XhlA Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 293.7 18.4 5.7e-91 1.6e-87 9 324 .. 349 635 .. 342 636 .] 0.92 Alignments for each domain: == domain 1 score: 293.7 bits; conditional E-value: 5.7e-91 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.............. CS Transposase_22 9 nrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd..fykelkelieskakele.alkekeentekqlkiikekqentskqvm 100 ++k +nsk +++ +P+k++ss Pa e++ ++df+el + +++k+ +++elke++ ++ ke + +k ++e + v T080936_3 349 EQKAENSKNQNAPSPPKDRSSLPAM--EQSRTENDFDELTEVGLRKSviNFSELKEDVPTHHKEAKnLEKRLDEQLTRISS------------VE 429 67899********************..*******************97789*************87666777665554443............33 PP ....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE CS Transposase_22 101 emnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkrPnlrl 194 + ++++elkt ++el + + s+ss+ d++eervs +ed+i+e++ e k+rekr+k++eqslq+i+++vkr nl l T080936_3 430 KTLNDMMELKTMARELCDACT------------------SFSSQFDQVEERVSVIEDQINEMK*EE-KFREKRVKRNEQSLQEIWEYVKRKNLHL 505 334589**************9..................9**********************7776.9*************************** PP ES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS.-EEETTEEEEEEE--- CS Transposase_22 195 iGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekG.rvtlkGkPirltadls 288 iGv es+ e+++klen+l++ii++ f nl+++an++iqei+r+P+r++ ++a++rhiivr+tkv++k+k+l+a+rekG t kG Pirlt dls T080936_3 506 IGVSESDGENGTKLENTLQDIIQDTFSNLARQANIQIQEIQRSPQRYSPRKATPRHIIVRFTKVEMKEKMLRAAREKG*V-THKGNPIRLTVDLS 599 ****************************************************************************9665.99************ PP HHHHHHHHHHHHHHHHH.HHTT---EEETTTEEEEES CS Transposase_22 289 aetlkarrewtdviqil.kekkfqPrllyPaklsiii 324 aetl+ar +w++v+++l k+fqPr++yPakls+i+ T080936_3 600 AETLQARIDWGPVFNML*E-KNFQPRISYPAKLSFIS 635 ***************7554.89*************97 PP >> Adaptin_binding Alpha and gamma adaptin binding protein p34 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 3.6 3.5e-05 0.096 38 108 .. 331 447 .. 265 451 .. 0.68 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 3.5e-05 Adaptin_binding 38 t.......eadeaqlekeeeeqdpsqpastepdksaaesesadaef.......................................lfggdeaar 85 + + ++ ek+e + s+++ + + + +s +a ++ + r T080936_3 331 SqsskskgRYNHKDGEKPEQKAENSKNQNAPSPPKDRSSLPAMEQSrtendfdeltevglrksvinfselkedvpthhkeaknleK-------R 417 03222233333344444444444444443333333333333322225677889999999*********999999777744333332.......3 PP Adaptin_binding 86 le.......dlesllsklqqakdnvrnlpd 108 l+ ++e++l+ ++++k ++r+l d T080936_3 418 LDeqltrisSVEKTLNDMMELKTMARELCD 447 336677777******************977 PP >> Sec3_C_2 Sec3 exocyst complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.7 0.0024 6.5 14 57 .. 406 451 .. 394 471 .. 0.82 2 ? 6.0 0.1 0.0051 14 18 49 .. 515 547 .. 506 551 .. 0.88 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0024 Sec3_C_2 14 aikdvlkelefsldeai..iesveelaeekielkevkdilqdsilG 57 + ++ k+le lde + i+sve+ ++ +elk + l d+ T080936_3 406 THHKEAKNLEKRLDEQLtrISSVEKTLNDMMELKTMARELCDACTS 451 56788999*******875579***************9999997544 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0051 Sec3_C_2 18 vlkelefsldeaiiesveelaee.kielkevkd 49 + +le++l++ i+++ +la++ +i+++e++ T080936_3 515 NGTKLENTLQDIIQDTFSNLARQaNIQIQEIQR 547 56789****************9857******96 PP >> ArAE_2_N Putative ER transporter, 6TM, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 2.4 0.00011 0.3 247 409 .. 373 546 .. 364 568 .. 0.77 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00011 ArAE_2_N 247 latlepsnese...........lnfkklekditkirslypkleavlsflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravvl.kser 334 +++++ +n+++ nf++l++d+ ++ ++le l + +s +++d++el++ r l + ++++ +d +ee+++v+ ++++ T080936_3 373 MEQSRTENDFDeltevglrksvINFSELKEDVPTHHKEAKNLEKRLDEQLTRISSVEKTLNDMMELKTMARELCDACTSFSSQFDQVEERVSVIEdQINE 472 555555555557788888888899******************************************************************9977753333 PP ArAE_2_N 335 ssklar...nshaklfseieksyrevgeyelkksiklleardeqrsltvsdldeva.ealrelsaelleeveegleviv 409 + + +k+ ++ e+s +e+ ey +k++ l+ +e + + +l+++ +++++++l +++ ++ i T080936_3 473 M----K*eeKFREKRVKRNEQSLQEIWEYVKRKNLHLIGV-SESDGENGTKLENTLqDIIQDTFSNLARQANIQIQEIQ 546 2....25433334666666667789999988888888886.44455555555555425667788888888877777775 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 6.0 7.2e-05 0.2 3 96 .. 397 499 .. 396 502 .. 0.78 2 ? 1.0 1.1 0.22 5.9e+02 19 66 .. 490 540 .. 481 574 .. 0.58 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 7.2e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek..npsk..fkidekelsrrrafvee 90 F e ke+V +++++l +r+ +++ +++++ + el+ +eL a+ s + + +++ee v+++e n+ k k +ek ++r ++ ++e T080936_3 397 FSELKEDVPTHHKEAKNLEKRLdeqlTRISSVEKTlNDMMELKTMARELCDACTSFSSQFDQVEERVSVIEDqiNEMK*eEKFREKRVKRNEQSLQE 493 778899998888888888888854444666666666699*******************************984544555567788888888888887 PP Syntaxin-6_N 91 vreevk 96 + e vk T080936_3 494 IWEYVK 499 776665 PP == domain 2 score: 1.0 bits; conditional E-value: 0.22 Syntaxin-6_N 19 slyrrweelledtss..stseeldetrteLrkalrsiewd.ledLeetvri 66 sl + we +++++ + se+ e t+L+++l++i +d ++L + +i T080936_3 490 SLQEIWEYVKRKNLHliGVSESDGENGTKLENTLQDIIQDtFSNLARQANI 540 33344444333333333368888899999*****99988746777665543 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 2.3 0.00044 1.2 9 45 .. 400 436 .. 398 440 .. 0.80 2 ? -0.4 0.3 0.44 1.2e+03 2 16 .. 459 473 .. 453 499 .. 0.59 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00044 XhlA 9 ietkldnleervdkleekaaeaeekiknleedlkkie 45 +++++ ++ ++ + le++ +e++++i ++e++l+++ T080936_3 400 LKEDVPTHHKEAKNLEKRLDEQLTRISSVEKTLNDMM 436 566666777777777778****************986 PP == domain 2 score: -0.4 bits; conditional E-value: 0.44 XhlA 2 ikerlerietkldnl 16 ++er+ ie +++++ T080936_3 459 VEERVSVIEDQINEM 473 334444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1438 (0.0881884); expected 326.1 (0.02) Passed bias filter: 438 (0.0268613); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 3192.08 // Query: T313653_1 [L=1217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-22 78.3 0.3 5.5e-22 77.3 0.3 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.3 0.3 3.4e-26 5.5e-22 15 80 .] 749 814 .. 749 814 .. 0.97 Alignments for each domain: == domain 1 score: 77.3 bits; conditional E-value: 3.4e-26 Transposase_1 15 getpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa.qqldklrqklqekrpalvnr 80 +etpk++pkp+ hqkkvm+tVwWsa+gli +fl+p etitse+Ya q + +++qklq ++ alvnr T313653_1 749 EETPKQFPKPNFHQKKVMVTVWWSAAGLIRHSFLNPDETITSEKYA*Q-ISEMHQKLQYLQLALVNR 814 69*******************************************777.799*************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 6330.24 // Query: T313653_2 [L=1217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 6217.20 // Query: T313653_3 [L=1217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 6330.24 // Query: T089779_1 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4793.15 // Query: T089779_2 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.9 0.7 9.5 6.9 0.4 2.6 2 zinc-ribbon_6 zinc-ribbon domain Domain annotation for each model (and alignments): >> zinc-ribbon_6 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.0074 1.2e+02 16 38 .. 198 220 .. 194 237 .. 0.78 2 ? 6.9 0.4 0.00058 9.5 16 73 .. 256 313 .. 253 319 .. 0.79 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.0074 zinc-ribbon_6 16 ssClkCgaalgfapeelellale 38 C +C+ +l+f+p++ + l+ T089779_2 198 AFCRRCHLSLTFNPSQSQQGILQ 220 67***********9988755554 PP == domain 2 score: 6.9 bits; conditional E-value: 0.00058 zinc-ribbon_6 16 ssClkCgaalgfapeelellaleeaeeeewrslaekeskyklCanaaeaaCnwlvpae 73 C +C+ +l f + ++ + + +++++ +s ++ +k C+n++ + w +++ T089779_2 256 AFCRRCHLSLKFIWKGESPRTANTMRKKKEQSWRTHIPDFKPCRNTTVIQKAWFCHQH 313 57**********9998888777777777777777777799******887777877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 4710.50 // Query: T089779_3 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4793.15 // Query: T234596_1 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.59 # Mc/sec: 11036.02 // Query: T234596_2 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 11036.02 // Query: T234596_3 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 11036.02 // Query: T280773_1 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 13.1 19.1 0.041 12.5 19.1 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 0.056 13.4 1.9 0.086 12.8 1.9 1.2 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 19.1 5e-06 0.041 97 178 .. 551 597 .. 546 636 .. 0.48 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 97 rkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekasere 178 ++k +k+++ +k +k+ke++ke+kk+ +k+r+ke++++++k+++r+ T280773_1 551 SQKRKKERK-----------------------------------RKKEGKKKKERKKERKKERKKERKKERKKKKKKKKKRP 597 111111111...................................11111111111122222222222222222222222221 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 1.9 1.1e-05 0.086 137 207 .. 548 677 .. 455 679 .. 0.67 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.1e-05 DDHD 137 sqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeekka............................................ 191 +++s++r++e++ +++ +k++e++++ +k+ ++e+k+e ++k+ ++ + + T280773_1 548 QNSSQKRKKERKRKKEGKKKKERKKER--KKERKKERKKERKKKKKKKkK-----Rpqkpsal*sawetclfspgpshlllplllapapshsvghsppte 640 222222222222222221111111111..111111111222221112212.....133445889999999999999999999999999999999999999 PP DDHD 192 ....................kvralnggg.RiDYaLq 207 + ++ ++++ R+DY+L+ T280773_1 641 alvgavlmpqnlhlql*ntrNSGSPQSQReRLDYSLR 677 999999999999999999865555555557****997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1688 (0.10352); expected 326.1 (0.02) Passed bias filter: 610 (0.0374095); expected 326.1 (0.02) Passed Vit filter: 241 (0.0147798); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.65 # Mc/sec: 6619.52 // Query: T280773_2 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.3 6.6 6.9 13 5.7 6.9 1.3 1 CTNNB1_binding N-terminal CTNNB1 binding 7.8 6.4 8.9 18 5.3 8.9 1.5 1 Eapp_C E2F-associated phosphoprotein Domain annotation for each model (and alignments): >> CTNNB1_binding N-terminal CTNNB1 binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.9 0.0017 13 41 99 .. 536 594 .. 519 621 .. 0.68 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0017 CTNNB1_binding 41 LadvKSSLVnEsEssssssseeeaerrrkskkdqesyaekardsleelrkqqdgglykk 99 + + SSL + s ++ + + ++e+er++++k+++e+ +e++++ ++e +k++ ++ kk T280773_2 536 IMPLHSSLCDKSKTHLKKERKKEKERKKERKRKKERKKERKKERKKERKKERKKKKKKK 594 56689*********999888888888877777777776666666666555544433333 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 8.9 0.0022 18 76 115 .. 554 593 .. 540 620 .. 0.46 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0022 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeee 115 ++++e+e+kk++k+kk++k+e+++e+++e+++e+++++++ T280773_2 554 ERKKEKERKKERKRKKERKKERKKERKKERKKERKKKKKK 593 2222222222222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2006 (0.123022); expected 326.1 (0.02) Passed bias filter: 723 (0.0443395); expected 326.1 (0.02) Passed Vit filter: 255 (0.0156384); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.41u 0.44s 00:00:01.85 Elapsed: 00:00:00.69 # Mc/sec: 6235.78 // Query: T280773_3 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00079 18.1 14.7 0.0011 17.6 14.7 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 0.0021 16.3 12.2 0.0031 15.8 12.2 1.2 1 Atrophin-1 Atrophin-1 family ------ inclusion threshold ------ 0.063 12.6 2.5 0.1 11.9 2.5 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 0.25 9.4 6.8 0.35 9.0 6.8 1.1 1 CDC45 CDC45-like protein 1.3 9.3 9.8 2.8 8.2 9.8 1.5 1 RNA_pol_Rpc4 RNA polymerase III RPC4 1.9 8.4 12.0 3.9 7.4 12.0 1.4 1 Eapp_C E2F-associated phosphoprotein 2 8.5 9.9 4.9 7.2 9.9 1.6 1 DUF4770 Domain of unknown function (DUF4770) Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 14.7 4.8e-07 0.0011 141 184 .. 552 595 .. 541 708 .. 0.70 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 4.8e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 141 kekrrpkekekekekkkkkekdrekekererekaserekkekkk 184 k+k r+k+ke+ kek++kke+++e++ker++e+++e++kk+kkk T280773_3 552 KKKERKKKKERRKEKERKKERKKERKKERKKERKKEKKKKKKKK 595 22222222222222222222222222222222222222222221 PP >> Atrophin-1 Atrophin-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 12.2 1.3e-06 0.0031 550 627 .. 521 599 .. 516 634 .. 0.71 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.3e-06 Atrophin-1 550 ykhldrGynscart.dlyftp..lassklakkreealekakreaeqkareekerekerekererererereaeraakasss 627 hl+ G c++ + tp ++ +kl k++e +k r e++ ++e+++e+ +ker++er++e++ ++ kas + T280773_3 521 ENHLNPGSRGCSQPrSCHCTPacVTRAKLISKKKERKKKKERRKEKERKKERKKER--KKERKKERKKEKKKKKKKKASKA 599 57999999999985256778833457899888888877777777777666655555..55555555555555555555543 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 2.5 4.3e-05 0.1 23 65 .. 553 595 .. 535 652 .. 0.58 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4.3e-05 SpoIIP 23 paeesekeekekeeeeeeekeeeeeeeikkeekeeekekeeds 65 ++e+++k+e+ ke+e ++e+++e ++e kke+k+e+k+k++++ T280773_3 553 KKERKKKKERRKEKERKKERKKERKKERKKERKKEKKKKKKKK 595 1222222222222222222222222222222221111111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 6.8 0.00015 0.35 167 208 .. 554 595 .. 545 717 .. 0.68 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00015 CDC45 167 kkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerr 208 k+rk+k+++++e+e+++er+++r++++++++k+++++kk+++ T280773_3 554 KERKKKKERRKEKERKKERKKERKKERKKERKKEKKKKKKKK 595 222222222222222222222222222111222222111111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 9.8 0.0012 2.8 33 85 .. 554 606 .. 532 612 .. 0.40 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0012 RNA_pol_Rpc4 33 qsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklkslpeGvi 85 ++++k+k+ ++k+ k++ +++ +k+ kk+ +k+kkkkk+k+a++++ p ++ T280773_3 554 KERKKKKERRKEKERKKERKKERKKERKKERKKEKKKKKKKKASKAKCPLKCL 606 11111111111122222222222222222223333333334444444444445 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 12.0 0.0017 3.9 60 126 .. 536 602 .. 531 613 .. 0.67 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0017 Eapp_C 60 amfvlnvkvdkeevlkykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeeeeelyhpvkCs 126 ++ + v++++ +++k+++++kk+++k+k++kke+k+e+++++++e+++e+++++++++ + kC T280773_3 536 SCHCTPACVTRAKLISKKKERKKKKERRKEKERKKERKKERKKERKKERKKEKKKKKKKKASKAKCP 602 5555556677778887777777777777777777676666666666777777777777888888884 PP >> DUF4770 Domain of unknown function (DUF4770) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 9.9 0.0021 4.9 82 132 .. 559 624 .. 548 638 .. 0.51 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0021 DUF4770 82 kerkkqekkkkkrlklkkkkekkrkekekkkkknkkkls.................pYfekqvrpktt 132 k+++++ek++kk++k+++kke+k+++k++kkkk+kk + p+ +++ p t T280773_3 559 KKERRKEKERKKERKKERKKERKKERKKEKKKKKKK--KaskakcplkclgdlsllPWAQPPASPSTS 624 222222222222222222222222222222222222..134677888899999999888888888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2064 (0.126579); expected 326.1 (0.02) Passed bias filter: 803 (0.0492457); expected 326.1 (0.02) Passed Vit filter: 316 (0.0193794); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.85u 0.45s 00:00:02.30 Elapsed: 00:00:00.85 # Mc/sec: 5061.99 // Query: T188421_1 [L=5002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 924 (0.0566663); expected 326.1 (0.02) Passed bias filter: 392 (0.0240402); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.46s 00:00:02.83 Elapsed: 00:00:00.84 # Mc/sec: 17035.56 // Query: T188421_2 [L=5002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.41s 00:00:02.46 Elapsed: 00:00:00.79 # Mc/sec: 18113.76 // Query: T188421_3 [L=5002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.4 6.9 5.6 9.8 6.1 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 5.6 0.0006 9.8 66 103 .. 1802 1839 .. 1799 1860 .. 0.62 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0006 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188421_3 1802 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 1839 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 956 (0.0586287); expected 326.1 (0.02) Passed bias filter: 501 (0.0307249); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.69u 0.48s 00:00:03.17 Elapsed: 00:00:00.82 # Mc/sec: 17451.06 // Query: T222931_1 [L=6148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-18 65.0 18.8 9.3e-09 34.1 0.2 3.1 3 Fibrinogen_BP Fibrinogen binding protein ------ inclusion threshold ------ 0.33 10.5 11.6 8.6 5.8 0.2 5.3 7 BRCA-2_helical BRCA2, helical Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.6 5.7 3.4e-09 2.8e-05 29 223 .. 4514 4708 .. 4472 4769 .. 0.39 2 ! 16.1 1.0 3.3e-07 0.0027 68 244 .. 5080 5256 .. 5066 5261 .. 0.25 3 ! 34.1 0.2 1.1e-12 9.3e-09 29 208 .. 5583 5762 .. 5580 5816 .. 0.34 Alignments for each domain: == domain 1 score: 22.6 bits; conditional E-value: 3.4e-09 Fibrinogen_BP 29 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenks 122 vle rd vle r + vle rd + vle + n e rd vle rd + T222931_1 4514 SVLESYVRDRRSDPSSSVLESYVRYKHSDTSRSVLESYVRDKHSDPRSTVLESYVNGKNSDHGNNAQESYVRDKHSDPPSSVLESYVRDKYSNH 4607 2233333333222223333333333333333333333333333333333333222222222222222222333333333333333333332222 PP Fibrinogen_BP 123 qgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdae.nrsqgnvlerrqrdae 215 vle +d vle rd vl+ +d + vl+ ++ + nvle rd ++s+ +le rd T222931_1 4608 SSSVLESYVKDKLSDHSRRVLESYVRDKLSDKSRSVLKSYMKDKYSDPRNTVLKSYDKGKHSDPNMNVLESYVRDKH*DHSR-SILESYVRDKH 4700 2233333333332222223333333332222222233333333333333333333333333333333333333332222222.12222222222 PP Fibrinogen_BP 216 nrsqgnvl 223 vl T222931_1 4701 SDPCSSVL 4708 22222222 PP == domain 2 score: 16.1 bits; conditional E-value: 3.3e-07 Fibrinogen_BP 68 rdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvler 161 d vle d vl+ rd v e rd + + vl+ rd vle + vle T222931_1 5080 TDKHSDHSRSVLESYVTDKRSDHSSSVLQSNVRDKHSEPSSSVQESYVRDQQSDPRSSVLKSYVRDKHSEPSRSVLESYVTEKHSDHSSSVLES 5173 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP Fibrinogen_BP 162 rqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvler..rqrdaenrsqgnvlerrqrdaenrsqgnvlerrqr 244 r vle rd + vl+ + + nvle r++ ++ vle r+ + vle r T222931_1 5174 YVRYKLSDHSRRVLESYVRDKLSDPRSSVLKSYVKGKHLHPSVNVLES*vRDKHSD--HSRSVLESYVRNKHSDHRRSVLEYYVR 5256 22222222222222222222222222222222222222222222222111111111..111122222222222222222222222 PP == domain 3 score: 34.1 bits; conditional E-value: 1.1e-12 Fibrinogen_BP 29 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenks 122 nvle rd +le r+ vle rd + vle r+ le rd + v e rd + T222931_1 5583 NVLESYVRDKHSDHGRSILESYVRNKHSDHSRSVLESYMRDKHSDPRSSVLESYVREKHSEHSRSALESYVRDKHSEPRNIVRESCVRDRHLDT 5676 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP Fibrinogen_BP 123 qgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvle 208 + vle r vle d s vl +d +s+ vl+ + nvle rd + vle T222931_1 5677 RSSVLESHVRVKHSDPHSSVLEFYVSDNHSDSSSSVLYSYVKDKHSESRSSVLKSYVKGKHTDPSINVLESYVRDRHSDPRSSVLE 5762 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP >> BRCA-2_helical BRCA2, helical # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.088 7.2e+02 12 54 .. 4533 4575 .. 4516 4589 .. 0.65 2 ? 1.0 0.0 0.031 2.6e+02 7 55 .. 4576 4623 .. 4569 4640 .. 0.70 3 ? 0.8 0.1 0.038 3.1e+02 10 52 .. 4611 4653 .. 4602 4666 .. 0.84 4 ? -1.8 0.0 0.23 1.9e+03 27 55 .. 5075 5103 .. 5068 5117 .. 0.61 5 ? 5.8 0.2 0.0011 8.6 7 56 .. 5119 5168 .. 5113 5192 .. 0.82 6 ? -3.6 0.0 0.84 6.9e+03 16 47 .. 5224 5255 .. 5223 5257 .. 0.64 7 ? 5.5 0.1 0.0013 11 5 53 .. 5611 5659 .. 5585 5694 .. 0.83 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.088 HHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S--- CS BRCA-2_helical 12 emriekkkrqeirpqpgslllkKtstvkRisLkaavegklpsk 54 e++++ k+ ++ r + s ++ K+s + L+++v+gk+ + T222931_1 4533 ESYVRYKHSDTSRSVLESYVRDKHSDPRSTVLESYVNGKNSDH 4575 4556666666666677777777766666666777777766654 PP == domain 2 score: 1.0 bits; conditional E-value: 0.031 HHHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S---S CS BRCA-2_helical 7 ardlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklpsky 55 + qe+++++k+ + + + s ++ K s+++ + L+++v++kl + T222931_1 4576 GNNAQESYVRDKHSDPPSSVLESYVRDKYSNHSSSVLESYVKDKLSD-H 4623 56778888888888888888888888888888888888888777654.3 PP == domain 3 score: 0.8 bits; conditional E-value: 0.038 HHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S- CS BRCA-2_helical 10 lqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklp 52 + e+++++k ++ r + s ++ K s ++R+ Lk+++++k T222931_1 4611 VLESYVKDKLSDHSRRVLESYVRDKLSDKSRSVLKSYMKDKYS 4653 5578899999999999999999************999998864 PP == domain 4 score: -1.8 bits; conditional E-value: 0.23 --HHHHHHCSSS--EETTGGGTS-S---S CS BRCA-2_helical 27 pgslllkKtstvkRisLkaavegklpsky 55 + s ++ K+s ++R+ L+++v +k+ + T222931_1 5075 LESYVTDKHSDHSRSVLESYVTDKRSDHS 5103 55666777777777777777777765533 PP == domain 5 score: 5.8 bits; conditional E-value: 0.0011 HHHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S---ST CS BRCA-2_helical 7 ardlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklpskys 56 + +qe+++++++ + ++ + s ++ K+s+ +R+ L+++v +k + s T222931_1 5119 SSSVQESYVRDQQSDPRSSVLKSYVRDKHSEPSRSVLESYVTEKHSDHSS 5168 6789*************************************999876443 PP == domain 6 score: -3.6 bits; conditional E-value: 0.84 HHHHTS-------HHHHHHCSSS--EETTGGG CS BRCA-2_helical 16 ekkkrqeirpqpgslllkKtstvkRisLkaav 47 ++k+ ++ r + s +++K+s + R+ L+ +v T222931_1 5224 RDKHSDHSRSVLESYVRNKHSDHRRSVLEYYV 5255 45666666667777777777777777776666 PP == domain 7 score: 5.5 bits; conditional E-value: 0.0013 HHHHHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S-- CS BRCA-2_helical 5 qlardlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklps 53 + +r + e+++++k+ + ++ + s +++K+s+++R+ L+++v +k + T222931_1 5611 DHSRSVLESYMRDKHSDPRSSVLESYVREKHSEHSRSALESYVRDKHSE 5659 56788889999999999999999*******************9988755 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.09u 0.43s 00:00:02.52 Elapsed: 00:00:00.80 # Mc/sec: 21985.48 // Query: T222931_2 [L=6148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-18 64.2 0.0 3.4e-11 42.1 0.1 3.0 3 Fibrinogen_BP Fibrinogen binding protein Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 0.011 1.8e+02 158 196 .. 4468 4506 .. 4460 4513 .. 0.22 2 ! 42.1 0.1 2.1e-15 3.4e-11 46 278 .. 4835 5067 .. 4809 5073 .. 0.45 3 ! 17.4 0.0 6.7e-08 0.0011 28 229 .. 5310 5511 .. 5302 5523 .. 0.26 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.011 Fibrinogen_BP 158 vlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqr 196 vle rd + vle +d ++ vle r T222931_2 4468 VLECYVRDRHLDPRSSVLESHLQDKHSDTRSSVLEFYVR 4506 111111111111111111111111111111111111111 PP == domain 2 score: 42.1 bits; conditional E-value: 2.1e-15 Fibrinogen_BP 46 vlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvl..errqrdaenr 137 vle r vle rd vle rd vle rd g vle rd + vl rd T222931_2 4835 VLESYVRHKHSYHSRSVLESYVRDNHSDHSRSVLESYVRDNHSDHSRSVLESYVRDKYSDPHGSVLESFVRDKHSHPSNTVL*sYV--RDKHSD 4926 44444444444444444444444444444444444444444444444444444444444444444444444444444444444222..222233 PP Fibrinogen_BP 138 sqgnvlerrqrda..enrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrd 229 vle r + rs vle r v e rd vle rd vle rd vle rd T222931_2 4927 PSSSVLESYVRGKh*DPRS--SVLESYVRHKHSYHSRSVPESYVRDNHSDHSRSVLESFVRDNHSDHSRCVLESYVRDKYSDPHSSVLESFVRD 5018 3334444444443222222..3444444444444444444444444444444444444444444444444444444444444444444444444 PP Fibrinogen_BP 230 aenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrda 278 vle rd + vle +d nvle rd+ T222931_2 5019 KHSDPSWRVLESCVRDQHSDPRSSVLECYVKDNHSDPHSNVLESYVRDI 5067 4444444444444444444444444444444444444444444444444 PP == domain 3 score: 17.4 bits; conditional E-value: 6.7e-08 Fibrinogen_BP 28 gnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenk 121 g vle rd + vl+ r+ + vl rd vle r+ + le r vle +d T222931_2 5310 GSVLESYVRDKHSEPRSSVLKSYVRERHLDPRNSVLVSHVRDKHSDPPSRVLEFYVRERHSNPSSSALESDLRGRHSDPSSSVLECYVKDKHSD 5403 2233332222222222223322222222222222222222332222222333322222222222222222222222222222333333333322 PP Fibrinogen_BP 122 sqgnvlerrqrdae.nrsqgnvlerrqrdaenrsqgnvler..rqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqr 212 vle +d + s vle r+ + vle ++ +e s vle rd+ vle +d v e r T222931_2 5404 HGSSVLESYVKDKH*D-SHSSVLESYVRNNHSDTSRSVLES*vWEKHSEPSS--SVLESYVRDIHSDHGSSVLEWYVKDKHSDPCSSVPEFYVR 5494 2223333222222111.22223333333222222222333221222222221..2233333333333333333333333332222333333333 PP Fibrinogen_BP 213 daenrsqgnvlerrqrd 229 d vle d T222931_2 5495 DKHSDHSSSVLESYMTD 5511 32222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.86u 0.44s 00:00:02.30 Elapsed: 00:00:00.82 # Mc/sec: 21449.25 // Query: T222931_3 [L=6148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.44s 00:00:02.36 Elapsed: 00:00:00.82 # Mc/sec: 21449.25 // Query: T315738_1 [L=1129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 5209.48 // Query: T315738_2 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.71 # Mc/sec: 4545.09 // Query: T315738_3 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4816.44 // Query: T111415_1 [L=2493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 361 (0.0221391); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.40s 00:00:01.98 Elapsed: 00:00:00.94 # Mc/sec: 7587.29 // Query: T111415_2 [L=2493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.45s 00:00:01.73 Elapsed: 00:00:00.77 # Mc/sec: 9262.40 // Query: T111415_3 [L=2492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1192 (0.0731019); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.43s 00:00:02.06 Elapsed: 00:00:00.72 # Mc/sec: 9901.65 // Query: T300744_1 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 5346.18 // Query: T300744_2 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.4 5.9 0.057 13.4 5.9 1.5 1 Mucin-like Mucin-like 8.3 5.4 8.4 13 4.7 8.4 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 5.9 6.9e-06 0.057 7 87 .. 513 593 .. 505 597 .. 0.85 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 6.9e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300744_2 513 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 593 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 8.4 0.0016 13 242 305 .. 535 593 .. 509 607 .. 0.62 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0016 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300744_2 535 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 593 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 5346.18 // Query: T300744_3 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-09 36.3 0.7 8.8e-09 35.2 0.7 1.6 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.4e-06 27.4 4.4 6e-06 26.1 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.7 1.1e-12 8.8e-09 2 62 .. 690 751 .. 689 754 .. 0.86 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 1.1e-12 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300744_3 690 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 751 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 4.4 7.4e-10 6e-06 10 82 .. 605 677 .. 592 684 .. 0.54 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 7.4e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300744_3 605 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 677 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 5184.17 // Query: T001138_1 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.93 9.7 2.8 1.7 8.9 2.8 1.4 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 2.8 0.00011 1.7 16 51 .. 1227 1262 .. 1227 1270 .. 0.70 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00011 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkas 51 +Y+++Y++I++++ + f + +r Lk s T001138_1 1227 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCS 1262 79*********9988888777666655555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.74 # Mc/sec: 5505.16 // Query: T001138_2 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.61 # Mc/sec: 6673.71 // Query: T001138_3 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 5501.30 // Query: T338751_1 [L=864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.73 # Mc/sec: 3385.97 // Query: T338751_2 [L=864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-08 35.0 0.0 2e-08 34.2 0.0 1.2 1 Trypsin Trypsin 0.0058 16.9 0.0 0.011 15.9 0.0 1.4 1 DUF1986 Domain of unknown function (DUF1986) Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 0.0 2.4e-12 2e-08 49 130 .. 108 184 .. 104 188 .. 0.88 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 2.4e-12 GEEEEESESBTTSETTTCEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTTBSSBHCCBBCSTTHTTSTTTEEEEEESSBS CS Trypsin 49 dvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvsGwgrt 130 +v+vv+g++++++ + ++ +v+kvi+h++y+p +ld D+ ll l++pv+++++ +p+cl++++ ++ c+ + w +t T338751_2 108 NVTVVMGTRTFSNIHS--ERKQVQKVIIHKDYKPPQLDSDLSLLLLATPVQFSNFKMPVCLQEEE---RTWDWCWMAQWVTT 184 5889999977777777..799******************************************55...58889999988665 PP >> DUF1986 Domain of unknown function (DUF1986) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 1.4e-06 0.011 42 99 .. 109 169 .. 102 176 .. 0.82 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.4e-06 DUF1986 42 vsvvlGgaktkksvkgpyeqivrvdafkdvp....ksevvllhleskvsfsrhvlPtfvpes 99 v+vv+G ++t +++++ +q+++v +kd s+++ll l+++v+fs+ +P+ + e T338751_2 109 VTVVMG-TRTFSNIHSERKQVQKVIIHKDYKppqlDSDLSLLLLATPVQFSNFKMPVCLQEE 169 667776.689**************99998642333799******************999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 3923.42 // Query: T338751_3 [L=863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.68 # Mc/sec: 3630.73 // Query: T352788_1 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.7 24.0 56 3.7 0.0 12.4 17 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.033 5.4e+02 8 22 .. 137 151 .. 133 158 .. 0.87 2 ? -2.1 0.0 0.22 3.6e+03 8 17 .. 182 191 .. 166 197 .. 0.63 3 ? -3.6 0.0 0.64 1e+04 8 21 .. 280 293 .. 275 294 .. 0.87 4 ? -3.2 0.0 0.47 7.7e+03 10 33 .. 365 388 .. 363 389 .. 0.88 5 ? -1.4 0.0 0.13 2.2e+03 8 22 .. 408 422 .. 405 423 .. 0.87 6 ? -2.7 0.1 0.34 5.6e+03 9 22 .. 431 444 .. 428 453 .. 0.75 7 ? -3.6 0.0 0.67 1.1e+04 8 22 .. 445 459 .. 438 470 .. 0.74 8 ? -0.6 0.0 0.074 1.2e+03 8 27 .. 565 584 .. 563 595 .. 0.69 9 ? 3.7 0.0 0.0034 56 8 32 .. 707 731 .. 691 735 .. 0.89 10 ? 1.3 0.0 0.02 3.2e+02 8 24 .. 798 814 .. 793 821 .. 0.83 11 ? -0.3 0.0 0.061 9.9e+02 8 21 .. 1038 1051 .. 1023 1055 .. 0.86 12 ? -3.6 0.0 0.63 1e+04 8 19 .. 1121 1132 .. 1119 1136 .. 0.79 13 ? -2.7 0.1 0.34 5.6e+03 9 22 .. 1152 1165 .. 1149 1174 .. 0.75 14 ? -3.7 0.0 0.71 1.2e+04 8 22 .. 1166 1180 .. 1161 1190 .. 0.74 15 ? 0.1 0.0 0.044 7.1e+02 8 21 .. 1376 1389 .. 1371 1391 .. 0.87 16 ? 0.2 0.0 0.042 6.8e+02 8 21 .. 1413 1426 .. 1408 1428 .. 0.87 17 ? 3.3 0.0 0.0044 72 8 34 .. 1547 1573 .. 1541 1577 .. 0.88 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.033 RST 8 sFpmLlaalskklpp 22 +FpmL++ ls+ +p T352788_1 137 TFPMLFQNLSHAVPG 151 7*********99985 PP == domain 2 score: -2.1 bits; conditional E-value: 0.22 RST 8 sFpmLlaals 17 +FpmL++ l T352788_1 182 TFPMLFKDLH 191 4666666655 PP == domain 3 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352788_1 280 PLPMLFQNLSHAVP 293 689*******9887 PP == domain 4 score: -3.2 bits; conditional E-value: 0.47 RST 10 pmLlaalskklppskmellqklYe 33 pmL++ l + +p + +l q lY T352788_1 365 PMLFQDLTHAVPGTSPMLFQDLYH 388 89*********9999999999885 PP == domain 5 score: -1.4 bits; conditional E-value: 0.13 RST 8 sFpmLlaalskklpp 22 +FpmL++ +s+ +p+ T352788_1 408 TFPMLFQDVSHAVPE 422 7********999985 PP == domain 6 score: -2.7 bits; conditional E-value: 0.34 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352788_1 431 FPMLFQGLHPHYSR 444 88999888888654 PP == domain 7 score: -3.6 bits; conditional E-value: 0.67 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352788_1 445 TFPMLFQNSSHAVPG 459 699999877777665 PP == domain 8 score: -0.6 bits; conditional E-value: 0.074 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ l ++ ++ +l T352788_1 565 TFPMLFQDLCPHCSRTFPML 584 68888888888877654444 PP == domain 9 score: 3.7 bits; conditional E-value: 0.0034 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352788_1 707 TFPMLFQSLSHAVPGPSPMLFQELH 731 5*************99988888776 PP == domain 10 score: 1.3 bits; conditional E-value: 0.02 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352788_1 798 TFPMLFQDLSHAVPRPS 814 7************9876 PP == domain 11 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_1 1038 TFPMLFQDLSHTVP 1051 69999999999887 PP == domain 12 score: -3.6 bits; conditional E-value: 0.63 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352788_1 1121 TFPMLFQDLHPS 1132 7*****988765 PP == domain 13 score: -2.7 bits; conditional E-value: 0.34 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352788_1 1152 FPMLFQGLHPHYSR 1165 88999888888654 PP == domain 14 score: -3.7 bits; conditional E-value: 0.71 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352788_1 1166 TFPMLFQNSSHAVPG 1180 799999877777765 PP == domain 15 score: 0.1 bits; conditional E-value: 0.044 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_1 1376 TFPMLFQNLSHAVP 1389 7*********9988 PP == domain 16 score: 0.2 bits; conditional E-value: 0.042 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_1 1413 TFPMLFQNLSHAVP 1426 7*********9998 PP == domain 17 score: 3.3 bits; conditional E-value: 0.0044 RST 8 sFpmLlaalskklppskmellqklYee 34 FpmL++ ls+ +p + llq l+++ T352788_1 1547 NFPMLFQDLSHAVPGPSPILLQDLHAC 1573 6***************99999999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.76 # Mc/sec: 8815.87 // Query: T352788_2 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 9.2 28.8 26 4.8 0.0 13.3 19 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.061 9.9e+02 8 21 .. 287 300 .. 272 304 .. 0.86 2 ? -3.6 0.0 0.64 1e+04 10 29 .. 372 391 .. 369 396 .. 0.61 3 ? -1.6 0.0 0.15 2.5e+03 8 21 .. 467 480 .. 464 489 .. 0.85 4 ? 4.8 0.0 0.0016 26 8 33 .. 497 522 .. 494 527 .. 0.88 5 ? -2.3 0.0 0.25 4.1e+03 8 21 .. 542 555 .. 536 564 .. 0.79 6 ? -3.6 0.0 0.64 1e+04 8 21 .. 655 668 .. 650 669 .. 0.87 7 ? -3.2 0.0 0.47 7.7e+03 10 33 .. 740 763 .. 738 764 .. 0.88 8 ? -1.9 0.0 0.19 3.2e+03 8 21 .. 783 796 .. 781 798 .. 0.87 9 ? -2.7 0.1 0.34 5.6e+03 9 22 .. 806 819 .. 803 828 .. 0.75 10 ? -3.6 0.0 0.67 1.1e+04 8 22 .. 820 834 .. 813 845 .. 0.74 11 ? -0.6 0.0 0.074 1.2e+03 8 27 .. 940 959 .. 938 970 .. 0.69 12 ? 3.7 0.0 0.0034 56 8 32 .. 1082 1106 .. 1066 1110 .. 0.89 13 ? -1.8 0.0 0.17 2.8e+03 8 21 .. 1188 1201 .. 1185 1209 .. 0.85 14 ? 4.7 0.0 0.0016 26 8 33 .. 1218 1243 .. 1215 1248 .. 0.88 15 ? 0.2 0.0 0.041 6.7e+02 8 21 .. 1263 1276 .. 1257 1279 .. 0.87 16 ? -2.6 0.0 0.31 5e+03 8 20 .. 1308 1320 .. 1305 1328 .. 0.81 17 ? -0.6 0.0 0.072 1.2e+03 8 21 .. 1383 1396 .. 1379 1398 .. 0.88 18 ? -0.5 0.0 0.07 1.1e+03 8 21 .. 1420 1433 .. 1417 1435 .. 0.88 19 ? -3.3 0.0 0.52 8.5e+03 8 19 .. 1554 1565 .. 1552 1574 .. 0.81 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_2 287 TFPMLFQDLSHTVP 300 69999999999887 PP == domain 2 score: -3.6 bits; conditional E-value: 0.64 RST 10 pmLlaalskklppskmellq 29 pmL++ l + ++ ++l q T352788_2 372 PMLFQELHPCCSRTFTMLFQ 391 77777777766665555544 PP == domain 3 score: -1.6 bits; conditional E-value: 0.15 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352788_2 467 TFPMLFQDLHPHYS 480 7******9999976 PP == domain 4 score: 4.8 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352788_2 497 TFPMLFQELSHAVPGRSLILFQDLYP 522 7*************999999999885 PP == domain 5 score: -2.3 bits; conditional E-value: 0.25 RST 8 sFpmLlaalskklp 21 +FpmL++ l + + T352788_2 542 TFPMLFKDLHPCCS 555 7******9988665 PP == domain 6 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352788_2 655 PLPMLFQNLSHAVP 668 689*******9887 PP == domain 7 score: -3.2 bits; conditional E-value: 0.47 RST 10 pmLlaalskklppskmellqklYe 33 pmL++ l + +p + +l q lY T352788_2 740 PMLFQDLTHAVPGTSPMLFQDLYH 763 89*********9999999999885 PP == domain 8 score: -1.9 bits; conditional E-value: 0.19 RST 8 sFpmLlaalskklp 21 +FpmL++ +s+ +p T352788_2 783 TFPMLFQDVSHAVP 796 7******9999887 PP == domain 9 score: -2.7 bits; conditional E-value: 0.34 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352788_2 806 FPMLFQGLHPHYSR 819 88999888888654 PP == domain 10 score: -3.6 bits; conditional E-value: 0.67 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352788_2 820 TFPMLFQNSSHAVPG 834 699999877777665 PP == domain 11 score: -0.6 bits; conditional E-value: 0.074 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ l ++ ++ +l T352788_2 940 TFPMLFQDLCPHCSRTFPML 959 68888888888877654444 PP == domain 12 score: 3.7 bits; conditional E-value: 0.0034 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352788_2 1082 TFPMLFQSLSHAVPGPSPMLFQELH 1106 5*************99988888776 PP == domain 13 score: -1.8 bits; conditional E-value: 0.17 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352788_2 1188 TFPMLFQDLHPHYS 1201 7******9999865 PP == domain 14 score: 4.7 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352788_2 1218 TFPMLFQELSHAVPGRSLILFQDLYP 1243 7*************999999998885 PP == domain 15 score: 0.2 bits; conditional E-value: 0.041 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_2 1263 TFPMLFQNLSHAVP 1276 7*********9998 PP == domain 16 score: -2.6 bits; conditional E-value: 0.31 RST 8 sFpmLlaalskkl 20 +FpmL++ l + T352788_2 1308 TFPMLFKDLHPRC 1320 7*****9998765 PP == domain 17 score: -0.6 bits; conditional E-value: 0.072 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_2 1383 TFPMLFQDLSHTVP 1396 7*********9998 PP == domain 18 score: -0.5 bits; conditional E-value: 0.07 RST 8 sFpmLlaalskklp 21 +FpmL++ +s+ +p T352788_2 1420 TFPMLFQDISHAVP 1433 7*********9988 PP == domain 19 score: -3.3 bits; conditional E-value: 0.52 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352788_2 1554 TFPMLFQDLHPY 1565 7*****998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 9054.14 // Query: T352788_3 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.2 21.8 26 4.8 0.0 12.1 14 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 0.59 9.7e+03 8 19 .. 204 215 .. 202 221 .. 0.80 2 ? 3.7 0.0 0.0034 56 8 32 .. 331 355 .. 315 359 .. 0.89 3 ? 1.3 0.0 0.019 3.1e+02 8 24 .. 422 438 .. 417 445 .. 0.83 4 ? -0.3 0.0 0.061 9.9e+02 8 21 .. 662 675 .. 647 679 .. 0.86 5 ? -3.6 0.0 0.64 1e+04 10 29 .. 747 766 .. 744 771 .. 0.61 6 ? -2.7 0.0 0.33 5.4e+03 8 22 .. 790 804 .. 788 805 .. 0.87 7 ? -1.6 0.0 0.15 2.5e+03 8 21 .. 842 855 .. 839 864 .. 0.85 8 ? 4.8 0.0 0.0016 26 8 33 .. 872 897 .. 869 902 .. 0.88 9 ? -2.3 0.0 0.25 4.1e+03 8 21 .. 917 930 .. 911 939 .. 0.79 10 ? -3.6 0.0 0.64 1e+04 8 21 .. 1030 1043 .. 1025 1044 .. 0.87 11 ? 1.3 0.0 0.02 3.2e+02 8 24 .. 1143 1159 .. 1138 1166 .. 0.83 12 ? 3.2 0.0 0.0049 79 8 32 .. 1442 1466 .. 1427 1471 .. 0.87 13 ? -0.5 0.0 0.07 1.1e+03 8 21 .. 1502 1515 .. 1498 1517 .. 0.85 14 ? 1.3 0.1 0.019 3.1e+02 8 27 .. 1524 1543 .. 1520 1547 .. 0.83 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.59 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352788_3 204 TFPMLFQDLHPR 215 7*****988775 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0034 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352788_3 331 TFPMLFQSLSHAVPGPSPMLFQELH 355 5*************99988888776 PP == domain 3 score: 1.3 bits; conditional E-value: 0.019 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352788_3 422 TFPMLFQDLSHAVPRPS 438 7************9876 PP == domain 4 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352788_3 662 TFPMLFQDLSHTVP 675 69999999999887 PP == domain 5 score: -3.6 bits; conditional E-value: 0.64 RST 10 pmLlaalskklppskmellq 29 pmL++ l + ++ ++l q T352788_3 747 PMLFQELHPCCSRTFTMLFQ 766 77777777766665555544 PP == domain 6 score: -2.7 bits; conditional E-value: 0.33 RST 8 sFpmLlaalskklpp 22 +Fp+L++ ls+ +p T352788_3 790 TFPTLFQDLSHAVPG 804 7*********99985 PP == domain 7 score: -1.6 bits; conditional E-value: 0.15 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352788_3 842 TFPMLFQDLHPHYS 855 7******9999976 PP == domain 8 score: 4.8 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352788_3 872 TFPMLFQELSHAVPGRSLILFQDLYP 897 7*************999999999885 PP == domain 9 score: -2.3 bits; conditional E-value: 0.25 RST 8 sFpmLlaalskklp 21 +FpmL++ l + + T352788_3 917 TFPMLFKDLHPCCS 930 7******9988665 PP == domain 10 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352788_3 1030 PLPMLFQNLSHAVP 1043 689*******9887 PP == domain 11 score: 1.3 bits; conditional E-value: 0.02 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352788_3 1143 TFPMLFQDLSHAVPRPS 1159 7************9876 PP == domain 12 score: 3.2 bits; conditional E-value: 0.0049 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q l+ T352788_3 1442 TFPMLFQSLSHAVPGPSPMLFQDLH 1466 6*************98888877665 PP == domain 13 score: -0.5 bits; conditional E-value: 0.07 RST 8 sFpmLlaalskklp 21 +FpmL++ ls +p T352788_3 1502 TFPMLFQELSCAVP 1515 7********98776 PP == domain 14 score: 1.3 bits; conditional E-value: 0.019 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ ls+ +p+ + l T352788_3 1524 TFPMLFQDLSHAVPRPSPTL 1543 7************9977655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 8701.38 // Query: T210851_1 [L=2777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.65 # Mc/sec: 12222.35 // Query: T210851_2 [L=2777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 12222.35 // Query: T210851_3 [L=2777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.66 # Mc/sec: 12037.16 // Query: T222370_1 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.69 # Mc/sec: 10464.83 // Query: T222370_2 [L=2523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.75 # Mc/sec: 9623.83 // Query: T222370_3 [L=2523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.40s 00:00:01.66 Elapsed: 00:00:00.76 # Mc/sec: 9497.20 // Query: T351160_1 [L=2772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.86 # Mc/sec: 9221.19 // Query: T351160_2 [L=2771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.05 13.3 0.1 0.11 12.2 0.1 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 6.9e-06 0.11 15 43 .. 1854 1886 .. 1851 1893 .. 0.79 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 6.9e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351160_2 1854 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1886 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.81 # Mc/sec: 9786.86 // Query: T351160_3 [L=2771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-21 73.4 7.1 1.8e-20 72.4 4.2 2.6 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.072 13.2 0.0 0.19 11.8 0.0 1.7 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.056 4.6e+02 25 38 .. 1664 1677 .. 1660 1679 .. 0.80 2 ! 72.4 4.2 2.2e-24 1.8e-20 9 79 .. 1849 1918 .. 1829 1919 .. 0.86 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.056 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351160_3 1664 EKLSKNAMLTIVWS 1677 45569********8 PP == domain 2 score: 72.4 bits; conditional E-value: 2.2e-24 Transposase_1 9 aqWldkgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 + g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351160_3 1849 S-----GWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1918 4.....556666666666666666*************************************************98 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 2.4e-05 0.19 5 23 .. 2696 2714 .. 2693 2720 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 2.4e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351160_3 2696 NLVCQVFPREYLANHNCGR 2714 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.31u 0.42s 00:00:01.73 Elapsed: 00:00:00.81 # Mc/sec: 9786.86 // Query: T002388_1 [L=1075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 4590.14 // Query: T002388_2 [L=1075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6150.78 // Query: T002388_3 [L=1074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5586.42 // Query: T374059_1 [L=2146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 8897.60 // Query: T374059_2 [L=2146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-22 78.2 0.0 1.8e-21 76.4 0.0 1.9 2 rve Integrase core domain 3.3e-17 62.9 0.2 9.9e-17 61.3 0.0 1.8 2 RNase_H RNase H 1.7e-09 37.4 0.0 2.8e-09 36.7 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.11 12.8 0.1 0.32 11.2 0.1 1.8 1 zf-H3C2 Zinc-finger like, probable DNA-binding Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.9 3.7e+03 86 104 .. 145 163 .. 140 163 .. 0.85 2 ! 76.4 0.0 4.4e-25 1.8e-21 5 116 .. 967 1074 .. 966 1076 .. 0.95 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.9 rve 86 flaelgirvsftrpgrpqd 104 fl + +++sftr+g+p + T374059_2 145 FLGHPSFSHSFTRKGHPTQ 163 7788889**********75 PP == domain 2 score: 76.4 bits; conditional E-value: 4.4e-25 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 g+ wq+ +t+++ ++ ++llv +d+fs++i a+ ++++ ++stv+ l ++++ +++v p + sDng+e++s+ ++++++ l+i+++++ p+rp T374059_2 967 GQDWQINFTHMPPVKK--VKFLLVLVDTFSGWIEAFLTTNK-RTSTVTSKLITEIKPRFWV-PCSFQSDNGPEFISQITQTLAQALHITWKLHIPYRP 1060 577*********5555..5**********************.*******************.************************************ PP rve 103 qdnGkvErfnrtlk 116 q+ GkvE++n++ k T374059_2 1061 QSSGKVEKMNGIQK 1074 **********9765 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.3 0.0 2.4e-20 9.9e-17 6 142 .. 696 844 .. 692 845 .. 0.80 2 ? -2.3 0.0 1 4.2e+03 66 100 .. 1568 1611 .. 1559 1625 .. 0.69 Alignments for each domain: == domain 1 score: 61.3 bits; conditional E-value: 2.4e-20 EEEEEEEECT.TTEEEEEEEE.CTT.......E..EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH...HHTTSSSE CS RNase_H 6 vYtDGsclgn.sgeggagavl.ykeg.....ar..nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw...kknawktt 92 ++ DGs ++n s ++g++++ y+++ r ++apl+ ++ ++aEL+A+i+ L a ++ +vniytDSkY+++ i++ + w + + T374059_2 696 WFIDGSTSKNpSLQAGYAIIEeYHNNthsfpPRsiVKAAPLPLGTSSQQAELIALIKELTlA--ESIQVNIYTDSKYAYNIIHSNAQIWse*S--YL-MA 790 89******99444558998776666667665334455688889****************977..999*****************999994442..33.23 PP TTSSBHTT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 93 seqkpvkn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +e p++ k + +llk++ ++++ + h+kgH+++ + +N aD Ak+a+ T374059_2 791 KET-PIIReKPIHHLLKAALLPENFAVIHCKGHQSNnshiSLENCKADCWAKQAS 844 333.66665888899999999************8887888679*********986 PP == domain 2 score: -2.3 bits; conditional E-value: 1 EEES-HHHHHHHHCCCHHH.........HHTTSSSETTSSBHTT CS RNase_H 66 iytDSkYvvkgitqwvhrw.........kknawkttseqkpvkn 100 +++ S+Y+ ++ ++ +k++ k+t++++p+ n T374059_2 1568 VKSNSSYISTTVGASLASSlsvwsnepqEKKTKKQTNKKHPIFN 1611 77888888877766666556666877775555556667778888 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.7 0.0 6.8e-13 2.8e-09 123 222 .] 356 448 .. 339 448 .. 0.93 Alignments for each domain: == domain 1 score: 36.7 bits; conditional E-value: 6.8e-13 .TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 123 segryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +++ +++ lpqG+ SP fn +++ l +l+ + ll+Y+ +l+ s s e++ ++ +++ ++l+e+++++++ K +l+ s +v yLG+++ T374059_2 356 RSQQLTWTDLPQGFRDSPHYFNQVLQLGLSQLSLQ--PSILLQYMGNLLLCSPSLEHCIQHTTKLLNFLAECRYQVSKGKAQLI-----SPKVSYLGLII 448 477889****************************7..69*********************************************.....9*******975 PP >> zf-H3C2 Zinc-finger like, probable DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 7.9e-05 0.32 11 90 .. 869 944 .. 862 952 .. 0.79 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 7.9e-05 HHHHHHT-EEETTTTEEEETTEEEE-HHHHHHHHHHHHHHH---HHHHHHHHHTST-SSEETTHHHHHHHHHHT-HHHHH CS zf-H3C2 11 kdltklgaiydktkkywvyqgkpvmpdqftfelldflhqlthlsfskmkallershspyymlnrdrtlknitetckacaq 90 k+l +ga + yw + k v+pd ll +h+l h s s ++ +l sh + + lk i+ c c + T374059_2 869 KQLITVGAQFK--PPYWFIKNKLVLPDPEKTTLLWDIHNLFHTSHSPLQHFLS-SHI-HIAPDIKEQLKVISHQCSICQK 944 55666666554..46*********************************99985.454.3345566789999999999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 288 (0.0176622); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.26u 0.45s 00:00:01.71 Elapsed: 00:00:00.82 # Mc/sec: 7487.00 // Query: T374059_3 [L=2145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-40 137.3 8.2 7.1e-37 127.2 3.5 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) 2.1e-10 40.6 0.0 3.9e-10 39.8 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.1 5.1e-06 0.042 243 325 .. 1362 1441 .. 1342 1457 .. 0.73 2 ! 127.2 3.5 8.7e-41 7.1e-37 340 557 .. 1627 1842 .. 1603 1846 .. 0.82 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 5.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavngsvsnktsapacslspqlkltlsevtgqglligkvPkthqalcnkte 325 +++++++L n sl+ +Cw+Cl +++ y a++ + + + + +q + s + + lig+ P + ++++nk T374059_3 1362 INLTQSLLLPANSSLALECWMCLSLSSSAYSALPAPLHDLLTGNIT-LIYKLQKGV--SLFKKVDTLIGDYPTSRANQANKLF 1441 5789999************************998655544444432.445555555..5566667777888888888888443 PP == domain 2 score: 127.2 bits; conditional E-value: 8.7e-41 XXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXX.XXHHHHHHHHHHHH CS TLV_coat 340 tvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaagv.gtGttgl.vstqqfkkLqaale 434 +f+c+ + l++++t+ C l+ l+P i l++++ +++ + + R + a+ +++l + Lgi+ g+ G++gl s++ fk L+ +l+ T374059_3 1627 LFFLCGSNTY----LCLPTNWTGTCTLVYLFPSIRLVPPNqPLPIPSVQYVRKRW---AIHVIPLTAALGITSGL*L-GASGLaTSLTYFKALSTKLQ 1716 5788988866....7899*********************9866666666666666...**************99664.667888899*********** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXX.....XX CS TLV_coat 435 kDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllgls.....pw 527 ++ + s +++l+sla vvlQNR GL l+++e+GGlC+ L +CCFy ++sg+vr+ +kL+ r ++ r+ ++nq +++ ++ p+ T374059_3 1717 GSLEDIARSFIRVHDQLDSLAGVVLQNRWGLNLIMVEKGGLCLSLGKKCCFYLNQSGLVRNAAEKLKRRAKK-LREYQKNQIN-SWFKNKIia*viPF 1812 ******************************************************************988765.5778888886.88888752222266 PP XXXXX....XXXXXXXXXXXXXXXXXXXXX CS TLV_coat 528 lttllstilgpLlllLLiLllGPcilnrLv 557 l +ll lg+++l Li l+ ++ r++ T374059_3 1813 LGPLLVICLGLMFLFCLINLFQKVLTDRIM 1842 666666666666666666555555555555 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.8 0.0 4.8e-14 3.9e-10 4 100 .. 77 168 .. 74 169 .. 0.79 Alignments for each domain: == domain 1 score: 39.8 bits; conditional E-value: 4.8e-14 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P++ ++gk i +llDtG +v++e + P + + + ++ G+ g+ + + + + + ++ ++ + s+l++p+ + +llGrd+L+klg+ + T374059_3 77 EPRVIGMVSGKIISFLLDTGVSLSVLTEYQGPLK----HSSISVVGMKGTQkNPHKTP--PLYCSFQGVTFTHSFLVIPHFLTPLLGRDILHKLGGII 168 67777789**************************....66666777766662444444..4444555555556*********************9977 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.76 # Mc/sec: 8074.32 // Query: T052006_1 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 10627.77 // Query: T052006_2 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.70 # Mc/sec: 10172.29 // Query: T052006_3 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 10954.78 // Query: T268281_1 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:00.79 # Mc/sec: 7423.67 // Query: T268281_2 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 8145.42 // Query: T268281_3 [L=2049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-05 22.4 1.8 0.00012 21.5 1.8 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 1.8 7.3e-09 0.00012 2 14 .. 886 898 .. 886 898 .. 0.98 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 7.3e-09 DUF1725 2 FagKWMELEnIIL 14 Fag+WMELE IIL T268281_3 886 FAGTWMELEAIIL 898 9***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 7921.41 // Query: T292103_1 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.41s 00:00:01.96 Elapsed: 00:00:00.80 # Mc/sec: 14060.98 // Query: T292103_2 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.83 # Mc/sec: 13552.75 // Query: T292103_3 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:00.75 # Mc/sec: 14998.38 // Query: T277635_1 [L=2749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:00.82 # Mc/sec: 9590.76 // Query: T277635_2 [L=2749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:00.74 # Mc/sec: 10627.60 // Query: T277635_3 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.80 # Mc/sec: 9826.95 // Query: T165140_1 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.42s 00:00:01.61 Elapsed: 00:00:00.74 # Mc/sec: 10132.75 // Query: T165140_2 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 12927.99 // Query: T165140_3 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-07 29.8 0.7 3.9e-07 29.1 0.7 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 3.9 6.4 10.0 18 4.3 3.5 2.4 2 DUF2981 Protein of unknown function (DUF2981) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.7 4.8e-11 3.9e-07 260 352 .. 2173 2262 .. 2167 2274 .. 0.79 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 4.8e-11 HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEESSHHHHHHHHTT-HHHHHHH CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfidktklrdylstrPalkrll 351 nk k rekG +t + +r ++d+s+et+ a+ +w++++q+lke+ +q k ++ + f dk++l++ strP k++l T165140_3 2173 NKGKETTLRREKGTMTSEER-VRPSSDFSTETMTAKTQWSEIFQVLKENTLQTWKNM-P*KYALKNESKNPGFSDKKMLKE--STRPITKEVL 2261 555555667*******9876.9******************************86554.24456677778888999999987..7888888887 PP T CS Transposase_22 352 k 352 T165140_3 2262 P 2262 4 PP >> DUF2981 Protein of unknown function (DUF2981) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 3.8 0.0046 38 212 242 .. 375 405 .. 354 422 .. 0.62 2 ? 4.3 3.5 0.0022 18 201 245 .. 414 456 .. 396 460 .. 0.67 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.0046 DUF2981 212 sgntansvnntpnsvdntanssdntsnsvnn 242 nta s nt s nta s nt+ s n T165140_3 375 YRNTARSCRNTARSYRNTAGSCRNTAGSYRN 405 4456666666666666666666666555544 PP == domain 2 score: 4.3 bits; conditional E-value: 0.0022 DUF2981 201 pdgkvaakdvnsgntansvnntpnsvdntanssdntsnsvnnkks 245 p+ + +a+ s nta+s nt s n a s nt+ s n s T165140_3 414 PESRNTAR--SSRNTAQSYRNTARSYRNMARSCRNTARSYRNTES 456 55555554..47788888888888888888888888888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.84 # Mc/sec: 8926.47 // Query: T222877_1 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 4258.42 // Query: T222877_2 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 4478.68 // Query: T222877_3 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4397.92 // Query: T127444_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.3 0.3 1 9.2 0.1 2.7 2 Integrase_Zn Integrase Zinc binding domain Domain annotation for each model (and alignments): >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 0.0047 77 20 36 .. 43 59 .. 41 60 .. 0.94 2 ? 9.2 0.1 6.3e-05 1 17 34 .. 998 1015 .. 995 1016 .. 0.92 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.0047 Integrase_Zn 20 kitreqAreIVqsCptC 36 ++t+++A +V+sC C T127444_1 43 HLTMSEAIVVVTSCGVC 59 79************999 PP == domain 2 score: 9.2 bits; conditional E-value: 6.3e-05 Integrase_Zn 17 kkFkitreqAreIVqsCp 34 ++F+++++qA+ +V sC T127444_1 998 QTFNVSTTQAQHVVSSCT 1015 78***************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 8523.46 // Query: T127444_2 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 8518.92 // Query: T127444_3 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 8656.32 // Query: T249684_1 [L=3783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.66 # Mc/sec: 16397.76 // Query: T249684_2 [L=3783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.64 # Mc/sec: 16910.19 // Query: T249684_3 [L=3783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 565 (0.0346498); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.36s 00:00:01.72 Elapsed: 00:00:00.70 # Mc/sec: 15460.74 // Query: T009696_1 [L=4596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:00.70 # Mc/sec: 18783.39 // Query: T009696_2 [L=4596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.80 # Mc/sec: 16435.47 // Query: T009696_3 [L=4596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.87 # Mc/sec: 15113.07 // Query: T291613_1 [L=4189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.63 # Mc/sec: 19022.25 // Query: T291613_2 [L=4189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.21 11.0 1.2 0.59 9.6 1.2 1.7 1 DUF331 Domain of unknown function Domain annotation for each model (and alignments): >> DUF331 Domain of unknown function # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 1.2 3.6e-05 0.59 18 34 .. 3759 3775 .. 3754 3777 .. 0.83 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 3.6e-05 DUF331 18 rsRvEkakKGKGSYqRk 34 ++R ++kKGKG Y+R+ T291613_2 3759 QKRKLRPKKGKGAYRRS 3775 67889***********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.40s 00:00:01.83 Elapsed: 00:00:00.76 # Mc/sec: 15768.44 // Query: T291613_3 [L=4188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 15.6 0.0 0.15 12.6 0.0 2.3 2 Ig_3 Immunoglobulin domain 0.11 12.4 0.0 0.33 10.9 0.0 1.7 2 I-set Immunoglobulin I-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.0 0.17 1.4e+03 31 78 .. 3004 3051 .. 2995 3051 .. 0.72 2 ? 12.6 0.0 1.8e-05 0.15 49 79 .] 3977 4007 .. 3961 4007 .. 0.82 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.17 -EEEEEE..-...TTSS-EE...SSEEEETTEEEESS--GGG-EEEEEEEE CS Ig_3 31 ptitWykngkklssnstsss...issegssssLtisnvtksdsGtYtCvAs 78 p +W + g+ s+ + s + + s + + +ti+++++s +G+ C+As T291613_3 3004 PWPRWHYTGS--SPLRRS-QwetDISFDVKKGFTIHQAQASLAGSLLCMAS 3051 5557999999..343333.2465566667777****************997 PP == domain 2 score: 12.6 bits; conditional E-value: 1.8e-05 EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 49 ssissegssssLtisnvtksdsGtYtCvAsN 79 +s+ +++ +++L+++ ++d+G+YtC A+N T291613_3 3977 ESQVQQEAEGTLYVEGTWARDAGVYTCWATN 4007 335678999*********************9 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.88 7.2e+03 47 76 .. 3025 3051 .. 3007 3060 .. 0.67 2 ? 10.9 0.0 4e-05 0.33 51 90 .] 3981 4020 .. 3964 4021 .. 0.76 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.88 EEEEEETTEEEEEESSB-GGGGEEEEEEEE CS I-set 47 vkvtveeaeytLtIsnvevsDeGkYtckat 76 ++++v + +tI+++++s +G+ c a+ T291613_3 3025 ISFDV---KKGFTIHQAQASLAGSLLCMAS 3051 33333...558**********999999886 PP == domain 2 score: 10.9 bits; conditional E-value: 4e-05 EETTEEEEEESSB-GGGGEEEEEEEEETSEEEEEEEEEEE CS I-set 51 veeaeytLtIsnvevsDeGkYtckatnsagkaeakaeLkV 90 ++eae tL ++ ++D+G Ytc atn g+ a+++++V T291613_3 3981 QQEAEGTLYVEGTWARDAGVYTCWATNLQGTGLATTHVHV 4020 233688*********************9776666655554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.90 # Mc/sec: 13312.40 // Query: T352860_1 [L=4580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.65 # Mc/sec: 20157.85 // Query: T352860_2 [L=4580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.33s 00:00:01.77 Elapsed: 00:00:00.71 # Mc/sec: 18454.37 // Query: T352860_3 [L=4579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.36s 00:00:01.87 Elapsed: 00:00:00.73 # Mc/sec: 17944.85 // Query: T258768_1 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 1414.22 // Query: T258768_2 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 1292.31 // Query: T258768_3 [L=261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 1224.06 // Query: T317176_1 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 3611.21 // Query: T317176_2 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 3933.64 // Query: T317176_3 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.95 10.0 5.3 24 5.5 0.2 2.9 2 PNRC Proline-rich nuclear receptor coactivator Domain annotation for each model (and alignments): >> PNRC Proline-rich nuclear receptor coactivator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.8 0.0017 28 4 15 .. 564 575 .. 564 577 .. 0.94 2 ? 5.5 0.2 0.0015 24 12 22 .. 664 674 .. 663 696 .. 0.90 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0017 PNRC 4 AGskfsnsPaPt 15 AG+++s sPaP T317176_3 564 AGGRWSSSPAPA 575 9**********5 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0015 PNRC 12 PaPtaLPkPpf 22 PaP++LP+P T317176_3 664 PAPSSLPLPER 674 9*******986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 3287.82 // Query: T137365_1 [L=2152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.73 # Mc/sec: 8433.57 // Query: T137365_2 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.80 # Mc/sec: 7692.06 // Query: T137365_3 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.81 # Mc/sec: 7597.09 // Query: T293997_1 [L=3248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:00.78 # Mc/sec: 11912.79 // Query: T293997_2 [L=3247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.42s 00:00:01.72 Elapsed: 00:00:00.75 # Mc/sec: 12385.49 // Query: T293997_3 [L=3247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.77 # Mc/sec: 12063.79 // Query: T164794_1 [L=3207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.78 # Mc/sec: 11762.41 // Query: T164794_2 [L=3207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.74 # Mc/sec: 12398.22 // Query: T164794_3 [L=3206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 12564.14 // Query: T259458_1 [L=2542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-10 39.8 40.4 1.5e-06 28.6 17.7 5.9 6 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 17.7 9e-11 1.5e-06 2 70 .. 216 288 .. 208 289 .. 0.92 2 ! 27.7 14.7 1.7e-10 2.7e-06 2 67 .. 282 351 .. 281 368 .. 0.91 3 ? -2.2 0.3 0.36 5.8e+03 44 61 .. 552 586 .. 548 602 .. 0.64 4 ? -2.0 4.7 0.32 5.1e+03 12 58 .. 931 963 .. 925 978 .. 0.49 5 ? -1.5 0.2 0.22 3.6e+03 6 23 .. 1508 1525 .. 1486 1532 .. 0.78 6 ? -5.2 3.4 1 1.6e+04 54 54 .. 1978 1978 .. 1927 2028 .. 0.54 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 9e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259458_1 216 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 288 8****************98779******99889*****985567*******9*********9988.9****976 PP == domain 2 score: 27.7 bits; conditional E-value: 1.7e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259458_1 282 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 351 8***************997669******99889*****985557*******99********8777.99999 PP == domain 3 score: -2.2 bits; conditional E-value: 0.36 CTD 44 TPawd..........aagsrTPay.......ktaw 61 TP+ + +gs P++ + +w T259458_1 552 TPHPGcdgaaihtacSKGSAAPGWtctvlghCRTW 586 66666666666666677899998864444444444 PP == domain 4 score: -2.0 bits; conditional E-value: 0.32 CTD 12 gsrTPawgadgsrTpayggagsrtPaynagakTPawdaagsrTPayk 58 +r w a g + pa g r P + ++ Pa++ T259458_1 931 AARSCSWDAGGGTAPAQG---HRRPRW---------V--QAGRPAWS 963 344444444333334433...244444.........3..22333333 PP == domain 5 score: -1.5 bits; conditional E-value: 0.22 CTD 6 awnsaggsrTPawgadgs 23 aw++a+ +Paw+ d + T259458_1 1508 AWSQAKLPSAPAWHSDHQ 1525 566666777788876544 PP == domain 6 score: -5.2 bits; conditional E-value: 1 CTD 54 T 54 T T259458_1 1978 T 1978 2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.81 # Mc/sec: 8978.06 // Query: T259458_2 [L=2542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-07 30.3 35.7 1.2e-05 25.2 10.4 7.8 8 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 10.4 7.3e-10 1.2e-05 7 98 .. 28 119 .. 25 121 .. 0.94 2 ! 21.5 17.3 1e-08 0.00016 5 98 .. 114 207 .. 111 211 .. 0.95 3 ! 8.5 8.1 0.00011 1.8 5 96 .. 180 271 .. 177 275 .. 0.80 4 ? -3.1 7.7 0.48 7.8e+03 29 81 .. 303 355 .. 278 388 .. 0.46 5 ? -7.5 4.7 1 1.6e+04 78 93 .. 1183 1198 .. 1168 1216 .. 0.39 6 ? -9.6 10.1 1 1.6e+04 34 88 .. 1737 1792 .. 1703 1805 .. 0.53 7 ? -21.9 23.8 1 1.6e+04 29 79 .. 1813 1851 .. 1760 1901 .. 0.56 8 ? -4.0 1.6 0.9 1.5e+04 22 53 .. 2149 2180 .. 2135 2183 .. 0.63 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 7.3e-10 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259458_2 28 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 119 6889999*********************************************************************************9996 PP == domain 2 score: 21.5 bits; conditional E-value: 1e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259458_2 114 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 207 6689999*************************************************************************************95 PP == domain 3 score: 8.5 bits; conditional E-value: 0.00011 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 s +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259458_2 180 SAGQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 271 55778888888888888888888888888888888888888888888888888888888888888888888888888888888877766665 PP == domain 4 score: -3.1 bits; conditional E-value: 0.48 Mucin-like 29 tapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapss 81 ta + ++ s +++p + s ta + + s ta p ++ s ++ p ap s T259458_2 303 TAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAPGS 355 33333333333333333333333333333333333333333333333333322 PP == domain 5 score: -7.5 bits; conditional E-value: 1 Mucin-like 78 apsssytapprdpsss 93 a+ss + + + ps++ T259458_2 1183 ATSSRKSPQTALPSGD 1198 3322222222222222 PP == domain 6 score: -9.6 bits; conditional E-value: 1 Mucin-like 34 apsssygepprdpsssytap.qsapsssytappstpsssyg.eppaapsssytappr 88 +p + ++p r++ +p q+ p+s t+p + + +p+++ ++s +pp T259458_2 1737 QPTQQ-IPPDRRSQTHLRTPrQRVPDSPKTPPDRGSQAHLRdTPRQRVPDSAKTPPD 1792 34444.444444444444443777777777777755444332333333444444443 PP == domain 7 score: -21.9 bits; conditional E-value: 1 Mucin-like 29 tapsrapsssygepprdpsssytapqsapsssytapps..tpsssygeppaap 79 t p ++s t +p + + ++p+ +++++ ++p+++p T259458_2 1813 TPPD--------------RGSQTHLRDTPRQRVPNSPQrhPQTEGLSQPNRHP 1851 1111..............11222222233333333222212233333333333 PP == domain 8 score: -4.0 bits; conditional E-value: 0.9 Mucin-like 22 raPsssytapsrapsssygepprdpsssytap 53 ++P ++ + ++ s+ + p +p +s t p T259458_2 2149 QEPAPGAPPQDQRLSKGTDASPLPPGCSPTRP 2180 45555555556666667777777777776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.77 # Mc/sec: 9444.45 // Query: T259458_3 [L=2542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-15 56.2 104.7 8.1e-07 29.4 16.0 5.2 7 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 0.009 16.4 0.9 1.1e+02 3.3 0.0 5.3 5 Caskin1-CID Caskin1 CASK-interaction domain Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 16.0 9.9e-11 8.1e-07 2 70 .. 29 101 .. 28 102 .. 0.90 2 ! 24.2 23.2 4.1e-09 3.3e-05 3 68 .. 63 132 .. 50 146 .. 0.40 3 ! 24.7 22.8 2.9e-09 2.3e-05 12 70 .. 94 156 .. 83 179 .. 0.42 4 ! 27.2 18.8 4.8e-10 3.9e-06 2 70 .. 128 200 .. 127 213 .. 0.91 5 ! 10.5 4.6 7.8e-05 0.63 2 33 .. 172 205 .. 171 230 .. 0.79 6 ? -2.9 0.0 1.2 9.5e+03 14 18 .. 622 626 .. 621 631 .. 0.53 7 ? -6.1 4.8 2 1.6e+04 42 49 .. 1848 1856 .. 1804 1894 .. 0.48 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 9.9e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259458_3 29 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 101 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 24.2 bits; conditional E-value: 4.1e-09 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa T259458_3 63 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPA 132 3444444444444443332233343333333344444332222444444344444444443332.334433 PP == domain 3 score: 24.7 bits; conditional E-value: 2.9e-09 CTD 12 gsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 +srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259458_3 94 DSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 156 4444444433344444444444444444432223444444444444444443333.33333322 PP == domain 4 score: 27.2 bits; conditional E-value: 4.8e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259458_3 128 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 200 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 5 score: 10.5 bits; conditional E-value: 7.8e-05 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gs 33 srTPa +s+++srTPa g + +srTpa g++ +s T259458_3 172 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGTQqDS 205 7899999999999999876658888888877433 PP == domain 6 score: -2.9 bits; conditional E-value: 1.2 CTD 14 rTPaw 18 +TPaw T259458_3 622 QTPAW 626 34444 PP == domain 7 score: -6.1 bits; conditional E-value: 2 CTD 42 akTPawd.a 49 + TP ++ T259458_3 1848 TDTPRQKvP 1856 333333331 PP >> Caskin1-CID Caskin1 CASK-interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.0 0.019 1.6e+02 35 51 .. 1759 1775 .. 1756 1777 .. 0.83 2 ? -1.1 0.0 0.33 2.7e+03 36 49 .. 1784 1797 .. 1780 1798 .. 0.78 3 ? 2.9 0.0 0.019 1.6e+02 35 51 .. 1807 1823 .. 1804 1825 .. 0.83 4 ? 3.3 0.0 0.014 1.1e+02 35 51 .. 1867 1883 .. 1858 1885 .. 0.82 5 ? -1.1 0.0 0.33 2.7e+03 36 49 .. 1892 1905 .. 1888 1906 .. 0.78 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.019 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259458_3 1759 SQTHLRHPQTEGPKLTS 1775 567899********965 PP == domain 2 score: -1.1 bits; conditional E-value: 0.33 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259458_3 1784 QTQLRHPQTEGPRL 1797 44577*******98 PP == domain 3 score: 2.9 bits; conditional E-value: 0.019 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259458_3 1807 SQTHLRHPQTEGPKLTS 1823 567899********965 PP == domain 4 score: 3.3 bits; conditional E-value: 0.014 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259458_3 1867 SQTHLRHPQTEGPKLTS 1883 667999********965 PP == domain 5 score: -1.1 bits; conditional E-value: 0.33 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259458_3 1892 QTQLRHPQTEGPRL 1905 44577*******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.31u 0.41s 00:00:01.72 Elapsed: 00:00:00.83 # Mc/sec: 8761.72 // Query: T337185_1 [L=6602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1585 (0.0972035); expected 326.1 (0.02) Passed bias filter: 399 (0.0244695); expected 326.1 (0.02) Passed Vit filter: 304 (0.0186434); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.60u 0.55s 00:00:06.15 Elapsed: 00:00:01.20 # Mc/sec: 15739.33 // Query: T337185_2 [L=6601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1521 (0.0932785); expected 326.1 (0.02) Passed bias filter: 496 (0.0304183); expected 326.1 (0.02) Passed Vit filter: 420 (0.0257574); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.64u 0.56s 00:00:07.19 Elapsed: 00:00:01.40 # Mc/sec: 13488.81 // Query: T337185_3 [L=6601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1838 (0.112719); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 241 (0.0147798); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.78u 0.67s 00:00:06.45 Elapsed: 00:00:01.31 # Mc/sec: 14415.53 // Query: T150285_1 [L=190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 754.94 // Query: T150285_2 [L=190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 921.28 // Query: T150285_3 [L=190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 836.24 // Query: T051093_1 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3021.75 // Query: T051093_2 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.69 # Mc/sec: 2802.78 // Query: T051093_3 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 3392.84 // Query: T159805_1 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 7640.80 // Query: T159805_2 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 12.9 0.0 0.092 12.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 5.6e-06 0.092 69 100 .. 231 262 .. 216 289 .. 0.79 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.6e-06 -EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 69 klllklDlkkaFdsvpleellrkltafkvptk 100 +++ lDlk aF+++pl+ +++l+af+ ++ T159805_2 231 IHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP 262 68899**********************98766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 7536.13 // Query: T159805_3 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 14.2 0.0 0.072 13.2 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 4.4e-06 0.072 77 100 .. 65 88 .. 63 89 .. 0.92 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.4e-06 EEESTTSSSEEE-HHHHCCCT-EE CS RVP 77 plilpelpvnllGrdlLqklgvrL 100 +l++p++pv+llGrd L+kl + L T159805_3 65 LLVIPTCPVPLLGRDTLTKLSASL 88 6899****************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 8090.26 // Query: T363015_1 [L=2566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 12234.82 // Query: T363015_2 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 11118.23 // Query: T363015_3 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.88 # Mc/sec: 8338.67 // Query: T276200_1 [L=1633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.80 # Mc/sec: 5839.67 // Query: T276200_2 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.43s 00:00:01.49 Elapsed: 00:00:00.85 # Mc/sec: 5492.79 // Query: T276200_3 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.74 # Mc/sec: 6309.29 // Query: T018598_1 [L=3911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.67 # Mc/sec: 16699.56 // Query: T018598_2 [L=3911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 16699.56 // Query: T018598_3 [L=3910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-06 27.0 0.6 5.7e-06 26.4 0.6 1.2 1 KSR1-SAM SAM like domain present in kinase suppressor RAS 1 Domain annotation for each model (and alignments): >> KSR1-SAM SAM like domain present in kinase suppressor RAS 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 0.6 3.5e-10 5.7e-06 1 37 [. 2712 2748 .. 2712 2752 .. 0.96 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 3.5e-10 KSR1-SAM 1 leiiqslidisaekLeglRtqCatsadltqqeiRaLE 37 + +q+li i + +L gl t+Ca+s+dltqqei +LE T018598_3 2712 CGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQEIQTLE 2748 7789********************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.65 # Mc/sec: 17208.99 // Query: T368941_1 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 6026.20 // Query: T368941_2 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 6227.07 // Query: T368941_3 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 6327.77 // Query: T176332_1 [L=807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 3980.50 // Query: T176332_2 [L=807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.75 # Mc/sec: 3078.25 // Query: T176332_3 [L=806] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (806 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 3247.65 // Query: T177665_1 [L=1718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-45 153.5 0.0 1.1e-44 153.0 0.0 1.1 1 PNMA PNMA Domain annotation for each model (and alignments): >> PNMA PNMA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 153.0 0.0 7e-49 1.1e-44 4 131 .. 401 528 .. 399 550 .. 0.94 Alignments for each domain: == domain 1 score: 153.0 bits; conditional E-value: 7e-49 PNMA 4 alLedWCrgmgvdaqralLvlgIpedceeaeieetLqaaLkpLGryrVlgkiFrreenakaaLvElaeevnlsliPreipGkggvWrVvvkpptqDaefl 103 alLe+ C++++vd ++l++lgIpedc+++e+ee+++ LkpLG++ V gk +++e+++kaa++ l+e++n++++Prei+GkggvWrVv+ p++qD efl T177665_1 401 ALLEHGCKALEVDSYKSLMILGIPEDCNHEEFEEIIRLPLKPLGKFEVAGKAYLEEDKSKAAIIQLTEDINYAVVPREIKGKGGVWRVVYMPRKQDIEFL 500 89************************************************************************************************** PP PNMA 104 krlneflqaegrtvedvvrllgleeepg 131 ++ln flq egrtved++r+l e p+ T177665_1 501 TKLNLFLQSEGRTVEDMARVLRQELCPP 528 ********************99887776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 7335.68 // Query: T177665_2 [L=1718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.66 # Mc/sec: 7446.83 // Query: T177665_3 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.75 # Mc/sec: 6549.39 // Query: T229024_1 [L=2842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-09 37.6 0.0 1.9e-09 37.1 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 0.0 1.2e-13 1.9e-09 112 210 .] 71 240 .. 58 240 .. 0.95 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.2e-13 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke....................................................... 156 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ T229024_1 71 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekvlr*rlsililksemlqnlnllehqpdt*rkcsleegplvrpasrrttpqt 169 89********************.9**************************************************************************** PP GAIN 157 ...................snseg.evvvvfvlYrnLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 ++ +g + + +++Y + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229024_1 170 trpgpgtegeapisr*krhPDDTG*FTFTLVIVYCTPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 240 ******************75645****************9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.42s 00:00:01.61 Elapsed: 00:00:00.79 # Mc/sec: 10291.75 // Query: T229024_2 [L=2842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 12318.91 // Query: T229024_3 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 12504.03 // Query: T384041_1 [L=4120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-37 126.7 4.9 0.74 9.9 0.0 25.5 30 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.1 0.2 3.3e+03 33 58 .. 54 84 .. 32 92 .. 0.55 2 ? -1.9 0.1 0.22 3.5e+03 13 49 .. 140 176 .. 123 183 .. 0.46 3 ! 4.3 0.0 0.0024 40 13 68 .. 270 325 .. 258 335 .. 0.75 4 ! 5.9 0.0 0.00077 13 23 68 .. 348 398 .. 338 428 .. 0.50 5 ? -2.8 0.0 0.39 6.4e+03 13 27 .. 448 462 .. 433 510 .. 0.45 6 ! 7.6 0.0 0.00022 3.6 24 74 .. 564 610 .. 533 618 .. 0.52 7 ! 3.9 0.0 0.0032 52 18 63 .. 628 675 .. 618 689 .. 0.61 8 ! 2.8 0.0 0.0071 1.2e+02 14 55 .. 773 814 .. 722 828 .. 0.60 9 ? -1.6 0.0 0.17 2.7e+03 28 68 .. 837 877 .. 832 887 .. 0.40 10 ! 9.5 0.0 6e-05 0.98 12 76 .. 936 1001 .. 926 1002 .. 0.89 11 ! 3.1 0.0 0.0057 94 21 68 .. 1010 1057 .. 996 1064 .. 0.43 12 ? -0.7 0.4 0.09 1.5e+03 38 38 .. 1229 1229 .. 1167 1265 .. 0.51 13 ? -1.1 0.1 0.12 2e+03 5 38 .. 1231 1264 .. 1224 1290 .. 0.64 14 ? 0.1 0.0 0.049 8e+02 13 56 .. 1351 1394 .. 1317 1403 .. 0.58 15 ! 5.0 0.0 0.0015 25 8 77 .] 1425 1495 .. 1417 1495 .. 0.89 16 ! 4.6 0.0 0.0019 31 4 53 .. 1486 1540 .. 1483 1563 .. 0.74 17 ! 9.9 0.0 4.5e-05 0.74 12 59 .. 1633 1680 .. 1622 1724 .. 0.58 18 ? -2.5 0.0 0.33 5.4e+03 41 77 .] 1776 1813 .. 1761 1821 .. 0.53 19 ? -3.1 0.0 0.51 8.3e+03 33 54 .. 1847 1863 .. 1840 1874 .. 0.41 20 ? -3.0 0.0 0.45 7.4e+03 17 53 .. 1906 1942 .. 1893 1947 .. 0.72 21 ! 6.2 0.0 0.00063 10 28 61 .. 1981 2014 .. 1971 2019 .. 0.60 22 ? -3.0 0.0 0.48 7.8e+03 6 33 .. 2148 2175 .. 2146 2180 .. 0.72 23 ! 5.7 0.0 0.00091 15 8 77 .] 2332 2407 .. 2325 2407 .. 0.70 24 ? 1.2 0.0 0.023 3.8e+02 13 57 .. 2521 2565 .. 2489 2592 .. 0.63 25 ? 1.4 0.1 0.02 3.2e+02 28 56 .. 2793 2821 .. 2789 2829 .. 0.44 26 ! 9.0 0.0 8.6e-05 1.4 16 75 .. 2858 2923 .. 2853 2930 .. 0.63 27 ? 0.7 0.0 0.033 5.3e+02 33 56 .. 2950 2973 .. 2920 2999 .. 0.41 28 ? -1.8 0.0 0.2 3.2e+03 6 36 .. 3145 3175 .. 3140 3192 .. 0.58 29 ? 1.6 0.0 0.017 2.8e+02 12 45 .. 3220 3253 .. 3219 3259 .. 0.83 30 ! 6.9 0.0 0.00038 6.2 1 70 [. 3528 3597 .. 3528 3603 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.2 Pentapeptide_4 33 l.....snvnFdkcllsdvdfaeadlkrasF 58 + + +Fd+ +++ f+ + + +++F T384041_1 54 Fq*iafESITFDSIPFHSIIFDSIPFQSIPF 84 4444444445555555555555555554444 PP == domain 2 score: -1.9 bits; conditional E-value: 0.22 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfa 49 ++ + F ++ +++ F +++++ F++ l++ f T384041_1 140 FHSIPFHSIPFHSIPFHSIPFHLILFHSIPLHSILFH 176 3344444444444444444444444444444444443 PP == domain 3 score: 4.3 bits; conditional E-value: 0.0024 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 ++ + F+++ +k+ +F+++++++ Fd+ +++ f+ + +++++F + ++ f T384041_1 270 FESIPFESIPIKSISFQSIPFDSLPFDSIPFDSIPFDSIPFNSIPFDSIPFDCIPF 325 56666888888888999999988888888888888888888888887766666655 PP == domain 4 score: 5.9 bits; conditional E-value: 0.00077 Pentapeptide_4 23 lkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 +++c F ++++ ++ F+++ +++v f + +++F+ + ++ f T384041_1 348 FHSCPFHSIPFplspfHSIPFHSSPFHSVPFHSFPFHSIPFHSIPFHSIPF 398 444444444443333333333333333333333333333333333333333 PP == domain 5 score: -2.8 bits; conditional E-value: 0.39 Pentapeptide_4 13 lsnvnFsearlkdcn 27 ++ ++F +r+++ + T384041_1 448 FHSIQFHFIRFHSFR 462 222222222222222 PP == domain 6 score: 7.6 bits; conditional E-value: 0.00022 Pentapeptide_4 24 kdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsgklkd 74 ++ F+++ l++v Fd+ +++ f+ + +k+++F+ + +++v +++ T384041_1 564 EAIPFKSIALQSVPFDSIPFDSIPFESIPFKSVPFESVPFESVP----FYS 610 33333333334444444444444444444444444444444333....333 PP == domain 7 score: 3.9 bits; conditional E-value: 0.0032 Pentapeptide_4 18 FsearlkdcnFteanl..snvnFdkcllsdvdfaeadlkrasFsgcdl 63 F ++ ++++ F ++++ + F++ l+++ ++ ++l ++F + T384041_1 628 FHASPFHASPFHSSPFhsISIAFHSILIRSIRLHAIRLHAIRFDSILF 675 555666666666666644444477777777777777777777655444 PP == domain 8 score: 2.8 bits; conditional E-value: 0.0071 Pentapeptide_4 14 snvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkr 55 + + F+++ +++ F ++++++ F++ +++ +++ + + + T384041_1 773 HSIPFRSNSFHSIPFDSIPCHSIQFNSIRFHSIQINSIPIHS 814 444455555555555555554444333333333333333333 PP == domain 9 score: -1.6 bits; conditional E-value: 0.17 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 F+++++++ F++ +++ f + + ++F + ++ f T384041_1 837 FQSIPFKSIPFHSVRIHSIPFHLIPFHVIPFNSIPFDSIPF 877 34444444444444444444433333333333333333333 PP == domain 10 score: 9.5 bits; conditional E-value: 6e-05 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdad 76 +++ + F+++ + + +F +++++ Fd+ +l++ f + + +++F+ +++++f+ ++++ T384041_1 936 TFESIPFESIPIDSLSFDSIPFVCIPFDSIQLDSIPFVSIPFESIPFKSIPFQSITFESiPFHSIP 1001 68888899999**********************************************886788775 PP == domain 11 score: 3.1 bits; conditional E-value: 0.0057 Pentapeptide_4 21 arlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 + ++ + F ++++++ F+ +++ f + + +++++ +++++f T384041_1 1010 IPFHLSPFHSCPFHSIQFHFIPVHSIPFHSIPFESIPLHSIAFNSIRF 1057 334444444444444444444444444444444444443333333333 PP == domain 12 score: -0.7 bits; conditional E-value: 0.09 Pentapeptide_4 38 F 38 F T384041_1 1229 F 1229 2 PP == domain 13 score: -1.1 bits; conditional E-value: 0.12 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanlsnvnF 38 + f+ +++ + F + +++ F+++++++ +F T384041_1 1231 SIPFHSIAFHSIPFHSRPFHSDPFNSSPFHSITF 1264 3345555555555555555555555555555553 PP == domain 14 score: 0.1 bits; conditional E-value: 0.049 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkra 56 l+ + F ++ ++++ F+++ l+ + ++++ l++ f+ + + + T384041_1 1351 LHFIPFHSIPFHSSPFQSTLLHLTPLHSSPLHSIPFDSTAFHAI 1394 33334444445555555555555555555555555555555444 PP == domain 15 score: 5.0 bits; conditional E-value: 0.0015 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 f+ + l+ F + +++ F +++++++ F+++ l++ + + l +++++ + ++ f+ l++++F T384041_1 1425 FHSTLLHSNPFHSTPVHSTPFHSIPFHSTPFHSTPLHSIPLHSIPLYSSPLHSISFHCIAFHSfPLHSISF 1495 77777888888888999999****************************************98889999988 PP == domain 16 score: 4.6 bits; conditional E-value: 0.0019 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadl 53 ++ ++ ++ + F++ l +++F ++++ ++ F+++ l+++ f + l T384041_1 1486 HSFPLHSISFHSIPFYSLPLLSTTFHSIPFpsitlHSIAFHSTPLHSSPFHSIPL 1540 5555666778888899998888888888886666677777777777777766655 PP == domain 17 score: 9.9 bits; conditional E-value: 4.5e-05 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 +++ + F ++ l++++F +++l+++ ++++ l ++ f + + +++F+ T384041_1 1633 AFHCIPFHSVPLHSTTFYNIQLHSTPLHSTALPTTPFHSIPFHSTPFH 1680 555555555555555555555555555555555555555555555554 PP == domain 18 score: -2.5 bits; conditional E-value: 0.33 Pentapeptide_4 41 cllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 + ++++ f + l +++F+ + l+++ ++ ++++ F T384041_1 1776 NPFHSTPFHSTPLLSIPFHSFPLQCTLLHSiPFHSIRF 1813 34445555555555555555555555554434444433 PP == domain 19 score: -3.1 bits; conditional E-value: 0.51 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlk 54 + + + l++++f+ + l T384041_1 1847 F-----HCTPLQSTEFQSTPLQ 1863 3.....3333333333333322 PP == domain 20 score: -3.0 bits; conditional E-value: 0.45 Pentapeptide_4 17 nFsearlkdcnFteanlsnvnFdkcllsdvdfaeadl 53 F+++ +++ +F ++ ++ F+++ l+++ f + + T384041_1 1906 PFRSILFHSIHFHCIPSHSIPFHSTPLHSTPFHSMPF 1942 4666666666666666688888888888888877665 PP == domain 21 score: 6.2 bits; conditional E-value: 0.00063 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgc 61 F ++ l+++ F+++ l++++++ ++l +++F+ T384041_1 1981 FLSISLHSTPFHSSRLHSTKLDSTQLHSIPFHTI 2014 4445556666666666666666666666666554 PP == domain 22 score: -3.0 bits; conditional E-value: 0.48 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanl 33 +s++ + + + F++++l+ + F ++++ T384041_1 2148 SSLHSSPVHSIPFYSITLHYTAFHSIPF 2175 6667777777888888888888877765 PP == domain 23 score: 5.7 bits; conditional E-value: 0.00091 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 f+ ++ + + ++ l+++ + +++l +++ F+++ll+++ f + l +++++++ l ++ f+ l++ +F T384041_1 2332 FHSIPFHSLPLHSSPLHSTPLHSIPLhatpcQSTPFHSTLLHSSPFHSNPLHSIPLHASPLHSIPFHSiPLHSTQF 2407 33333444444444444444444444666669999*****************************998867988877 PP == domain 24 score: 1.2 bits; conditional E-value: 0.023 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkras 57 l+ + F + l+++ + +++l+++ F+++ l+++ + + l +++ T384041_1 2521 LHSFPFHSTPLHSTPLHSIPLHSMPFHSTPLHSTLLHSTPLHSIP 2565 444445555555555555555555555555555555555555554 PP == domain 25 score: 1.4 bits; conditional E-value: 0.02 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkra 56 F ++++ ++ +++++++++ ++ + + ++ T384041_1 2793 FHSIPFYSTALHSTQFDSTPLQSIPFQSL 2821 33333333333333333333333333333 PP == domain 26 score: 9.0 bits; conditional E-value: 8.6e-05 Pentapeptide_4 16 vnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 v F ++ l++ F +++ +++ F++++++++ f + l +++F+ + l ++ f+ l+++ T384041_1 2858 VPFHSIPLHSIPFHCIPFhstpvHSTPFHSTTFHSTLFHSIPLYSIPFHSSPLHSIPFHSiPLHSI 2923 333333333333444444333337777888888888888888888888888888888876567666 PP == domain 27 score: 0.7 bits; conditional E-value: 0.033 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlkra 56 ++++ F+ +++ f + + + T384041_1 2950 FHSTPFHTIPFHSIPFHSTPFHCI 2973 222222222222222222222222 PP == domain 28 score: -1.8 bits; conditional E-value: 0.2 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnv 36 + ++ + l+ + F ++ ++++ F +++l+++ T384041_1 3145 AALHSTPLHFIAFHSISFHSSPFHSTPLHST 3175 4444555555555555555555555555443 PP == domain 29 score: 1.6 bits; conditional E-value: 0.017 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsd 45 +++ + F++ l++++F +++l++ ++++ +++ T384041_1 3220 QFHSIPFYSTPLHSSTFHSTPLQYIPLHSTPFQS 3253 7999999999999999999999888888777766 PP == domain 30 score: 6.9 bits; conditional E-value: 0.00038 Pentapeptide_4 1 adFtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 ++F+ + f +++ + F ++ +++ +F++++l ++ + ++ l++ + + l +++++ + l ++ f+ T384041_1 3528 SSFHCVAFYSIAFHSIPFLSILFHSIQFSSIPLCSTPLPSTALHSITSDSITLHSSPLHSSALHSTPFHS 3597 689******************************9999999999999999999999999998888888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.40s 00:00:01.81 Elapsed: 00:00:00.78 # Mc/sec: 15111.05 // Query: T384041_2 [L=4119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-42 143.8 71.4 0.0016 18.4 0.4 30.3 30 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.7 0.0 0.0038 62 3 52 .. 42 91 .. 41 93 .. 0.71 2 ! 16.7 4.5 3.4e-07 0.0056 3 59 .. 102 159 .. 97 161 .. 0.68 3 ! 11.1 0.2 1.8e-05 0.29 26 75 .. 196 246 .. 167 250 .. 0.81 4 ! 11.2 0.2 1.7e-05 0.28 3 56 .. 263 316 .. 261 331 .. 0.88 5 ! 4.6 0.2 0.0019 31 28 61 .. 366 399 .. 361 423 .. 0.50 6 ! 18.4 0.4 1e-07 0.0016 4 69 .. 417 482 .. 411 490 .. 0.56 7 ? -0.3 0.0 0.067 1.1e+03 18 43 .. 511 536 .. 500 578 .. 0.54 8 ! 8.9 0.0 9.1e-05 1.5 13 64 .. 700 751 .. 694 756 .. 0.72 9 ! 11.3 0.0 1.6e-05 0.26 8 69 .. 785 846 .. 770 858 .. 0.70 10 ! 11.0 1.2 2e-05 0.33 4 67 .. 816 894 .. 813 903 .. 0.71 11 ! 7.6 1.0 0.00023 3.7 3 68 .. 860 940 .. 860 950 .. 0.55 12 ! 4.0 0.2 0.0031 51 6 54 .. 983 1011 .. 969 1090 .. 0.51 13 ! 6.9 0.0 0.00039 6.3 27 73 .. 1119 1166 .. 1080 1170 .. 0.59 14 ? -1.9 0.0 0.21 3.5e+03 31 50 .. 1225 1244 .. 1218 1253 .. 0.55 15 ! 5.0 0.1 0.0015 25 51 51 .. 1536 1536 .. 1463 1585 .. 0.47 16 ? -3.1 0.0 0.5 8.1e+03 25 65 .. 1679 1719 .. 1674 1730 .. 0.43 17 ! 4.0 0.0 0.0031 51 16 75 .. 1753 1814 .. 1746 1816 .. 0.75 18 ? -1.7 0.0 0.18 2.9e+03 31 61 .. 1843 1873 .. 1839 1877 .. 0.85 19 ? 1.9 0.1 0.014 2.3e+02 16 60 .. 1972 2016 .. 1958 2023 .. 0.57 20 ! 2.5 0.0 0.0087 1.4e+02 6 68 .. 2046 2108 .. 2041 2118 .. 0.78 21 ? 2.0 0.0 0.013 2.1e+02 23 62 .. 2266 2305 .. 2249 2309 .. 0.64 22 ! 3.2 0.0 0.0053 87 23 59 .. 2380 2416 .. 2340 2422 .. 0.75 23 ! 3.2 0.0 0.0056 91 20 66 .. 2486 2532 .. 2459 2542 .. 0.64 24 ! 4.2 0.0 0.0025 41 16 48 .. 2851 2883 .. 2837 2925 .. 0.80 25 ! 8.9 0.0 9.3e-05 1.5 6 59 .. 2931 2984 .. 2898 2993 .. 0.63 26 ? 1.6 0.1 0.017 2.7e+02 2 51 .. 3080 3133 .. 3079 3149 .. 0.78 27 ? -1.9 0.0 0.2 3.3e+03 32 63 .. 3228 3259 .. 3219 3275 .. 0.55 28 ! 5.1 0.2 0.0014 23 22 58 .. 3312 3348 .. 3293 3385 .. 0.64 29 ! 8.8 0.1 0.0001 1.6 28 68 .. 3395 3435 .. 3358 3442 .. 0.79 30 ? 0.1 0.0 0.048 7.9e+02 14 41 .. 3681 3708 .. 3676 3736 .. 0.84 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.0038 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaead 52 F+++sf+ + ++ +++ ++ l+ F++++l + F+++ +++ +f + T384041_2 42 FHSSSFHSSPFDSSELHSSPLHLIPFRSIPLYSIPFHSNPFHSISFHSIA 91 77777777777777777777777777777777777777777777776665 PP == domain 2 score: 16.7 bits; conditional E-value: 3.4e-07 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl.snvnFdkcllsdvdfaeadlkrasFs 59 F+++sf+ + ++ ++F ++ ++++ + ++++ s+ +Fd+ +++++f +++ +++F+ T384041_2 102 FHSSSFHSSSFHSSSFHSSSFHSSPIHSSPFhSSPVFDSIPFHSTRFHSTRFHSTRFH 159 6777777777777777777777777777777766667777777777777777777775 PP == domain 3 score: 11.1 bits; conditional E-value: 1.8e-05 Pentapeptide_4 26 cnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 + ++++ +++ +F++ ++++++f+ + +k+++F+ + ++++ f+ ++++ T384041_2 196 TPIKSISFHSRRFHSIQVHSSRFQSIPFKKIPFHSSPFQSIPFHSiAFHSI 246 556667778888999999999999999999999999999888876567666 PP == domain 4 score: 11.2 bits; conditional E-value: 1.7e-05 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkra 56 F++ +f+ + ++ + F ++ ++++ F ++++++ F++ l+++ f + + ++ T384041_2 263 FHSIHFLSSPFHSSPFQSSPFHSSPFHSIPFHSILFHSILFHSILFHSILFHSI 316 9999*******************************9999999999988877665 PP == domain 5 score: 4.6 bits; conditional E-value: 0.0019 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgc 61 F +++ ++ +F++ +++ +f +++ +++F+ T384041_2 366 FHSIPVHSIRFHSIPFHSIRFHSIRFHSIQFHSI 399 4444455555555555555555555555555432 PP == domain 6 score: 18.4 bits; conditional E-value: 1e-07 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 ++ f+ ++ ++F ++++++ +F++ ++++ F++ ++++ f+ + +k++sF+ ++++ f T384041_2 417 HSIPFHCIPFHSISFHSIQFHSFRFKSLPFNSIPFNSISFDSIPFESIPFKSISFQSIPFESIPFQ 482 555555555566666666666666666666666666666666666666666666665555555553 PP == domain 7 score: -0.3 bits; conditional E-value: 0.067 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcll 43 F++++l++ F +++++ F+++++ T384041_2 511 FESIELHSIPFHTIPFHSIAFHSSSF 536 44444444444444444444333332 PP == domain 8 score: 8.9 bits; conditional E-value: 9.1e-05 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 ++ + F ++ +++ +F+ + +++++F++ ++++ f+ + +k+++F+ + T384041_2 700 FESIPFHSSPFHSIRFQCILCHSTRFHSIPFHSSPFDSIPFKSIPFQSIPFH 751 344445555555555555555*************************986655 PP == domain 9 score: 11.3 bits; conditional E-value: 1.6e-05 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 f+ ++ + F+++ + + F+++++++ F++ ++++ f +++ +++F+ + + ++ f+ T384041_2 785 FHLIPFHAIPFNSIPFDSIPFKSIPFQSIPFHSIPFHSTLFHSIKFESIPFHSSPFLSSPFH 846 55555777777777777777777777777777777777777777777777777666666554 PP == domain 10 score: 11.0 bits; conditional E-value: 2e-05 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkrasFsgcdlknvn 67 ++ f+ + ++ + F+++ ++++ F ++++ ++++F++ ++++ f +++ ++ F+ +++ T384041_2 816 HSIPFHSTLFHSIKFESIPFHSSPFLSSPFhsipfefipfhsi*fHSMSFHSIQFHSIPFHSNQFHSILFHSIKFESNA 894 5555666666666666666666666666665555588888999998888999999999998888888888887777655 PP == domain 11 score: 7.6 bits; conditional E-value: 0.00023 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 F++ sf+ +++ + F ++++++ F ++++ ++ ++ +++ +f ++ +++F+ + l ++ f T384041_2 860 FHSMSFHSIQFHSIPFHSNQFHSILFHSIKFesnafpslpflsipvHSSPVHSIRIHSISFHCFEFHSIPFQSSPLHSSPF 940 555566666666666666666666666666654444444444444344446666666666666666666666666655555 PP == domain 12 score: 4.0 bits; conditional E-value: 0.0031 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlk 54 + f+ + l + F ++ +++ +F + ++ T384041_2 983 SPFHSSPLPSSLFHSILFHSIQFHSFRF--------------------H 1011 3333333333333333333333333333....................2 PP == domain 13 score: 6.9 bits; conditional E-value: 0.00039 Pentapeptide_4 27 nFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klk 73 +F++ ++++ F++ ++ + f+ ++l +++F+ ++ + f+ ++ T384041_2 1119 RFNSFPFQSIPFHSIKFYSIPFYSISLESIPFKSIPFQAISFESiPFY 1166 344455555556666666666666666666666666666666553455 PP == domain 14 score: -1.9 bits; conditional E-value: 0.21 Pentapeptide_4 31 anlsnvnFdkcllsdvdfae 50 +++++ F+++ l++ +f T384041_2 1225 IPFHSSPFHSTRLHSIRFHS 1244 44444444444444444443 PP == domain 15 score: 5.0 bits; conditional E-value: 0.0015 Pentapeptide_4 51 a 51 + T384041_2 1536 I 1536 1 PP == domain 16 score: -3.1 bits; conditional E-value: 0.5 Pentapeptide_4 25 dcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 ++ +++++l++++F++ l ++ + + l ++++ l++ T384041_2 1679 STGLRSTPLHSTSFHSILSHSIPLHSTPLHFTPLHSTPLQS 1719 44444445555555444444444333333333333333333 PP == domain 17 score: 4.0 bits; conditional E-value: 0.0031 Pentapeptide_4 16 vnFsea.rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkda 75 ++F ++ ++++ +F +a+l+++ +++ l++ + + +++F + l ++ f s+ l+++ T384041_2 1753 ISFHHSiQFQSIQFHSAPLHSTAIHSTPLHSIPLHSFPFHSTPFLSNALYSTPFhSTPLDSI 1814 56766668888888888888888888888888888888888888888888888833467776 PP == domain 18 score: -1.7 bits; conditional E-value: 0.18 Pentapeptide_4 31 anlsnvnFdkcllsdvdfaeadlkrasFsgc 61 +++++++++++ l+++ + + + +++F+ T384041_2 1843 IPFHSTVLHSNPLNSSPLHSNLFHSIQFQSL 1873 6788999999999999999999999999865 PP == domain 19 score: 1.9 bits; conditional E-value: 0.014 Pentapeptide_4 16 vnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 + F ++ ++++ F +++l+++ d+ l+++ ++ + + +++F+ T384041_2 1972 IAFHSIPFHSSLFHSTRLHSTPVDSIPLNSTPLNSIPFHSIPFHS 2016 445555555555555555555555555555555555555555543 PP == domain 20 score: 2.5 bits; conditional E-value: 0.0087 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 ++f+ ++ ++F+ + + + F ++++ + F++ l+++ f + l ++F+ l ++ + T384041_2 2046 STFHCIAFYSITFNCIPFLSIAFHSIPFLSIPFHSVRLHSTPFLYIPLHPIPFHSIPLLCTPL 2108 567777888889999999999999999999999999999999999988888888877777766 PP == domain 21 score: 2.0 bits; conditional E-value: 0.013 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcd 62 l++ F ++l+++ F+++ +++ f + l++++F + d T384041_2 2266 LHSIPFHRTPLHSTQFHSTPVHSIPFHSNPLNSTPFLQKD 2305 4555566666666666666666666666666666665555 PP == domain 22 score: 3.2 bits; conditional E-value: 0.0053 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 ++++ F + + +++ F+++l+++++++ + l +++F+ T384041_2 2380 IHSTPFHSMPVHSTPFHSTLFHSTQLNSTPLHSTPFH 2416 4445555566678888888888888888888887776 PP == domain 23 score: 3.2 bits; conditional E-value: 0.0056 Pentapeptide_4 20 earlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknv 66 ++rl++ + ++l++ F++++l+++ f + + +++F+ l ++ T384041_2 2486 SIRLHSIPLHCTPLHSIPFHSTSLHSTPFHAIPFHSTPFHSIPLHSI 2532 44555555555556777788888888888888888888877666555 PP == domain 24 score: 4.2 bits; conditional E-value: 0.0025 Pentapeptide_4 16 vnFsearlkdcnFteanlsnvnFdkcllsdvdf 48 ++F ++ +++ F +++++++ F+++ll+++ + T384041_2 2851 ISFHSIPFHSIPFHYTPFHSTAFHSTLLQSTPL 2883 567777788888888888999999999988755 PP == domain 25 score: 8.9 bits; conditional E-value: 9.3e-05 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 +f+ +++ + + ++ ++++ + +++++++ F+++ l++ f + l +++F+ T384041_2 2931 ITFHSIAFHSTPLHSSPFHSTPLHSIPFHSTPFHSTPLHSIAFHSTPLHSIPFH 2984 344444455555555555555555555566666666666666666666666665 PP == domain 26 score: 1.6 bits; conditional E-value: 0.017 Pentapeptide_4 2 dFtncsfnncklsnvnFsea....rlkdcnFteanlsnvnFdkcllsdvdfaea 51 +F+ fn + ++F + l++++F ++ ++++ F+++ l+ + + + T384041_2 3080 TFHFFAFNCIPFLSITFHHTptptPLHSSTFHYILFHSTLFHSSPLHCTPLHSI 3133 67777777777888888888888889****************998887766555 PP == domain 27 score: -1.9 bits; conditional E-value: 0.2 Pentapeptide_4 32 nlsnvnFdkcllsdvdfaeadlkrasFsgcdl 63 +l+++ +++ l+++ f + l +++F+ + + T384041_2 3228 PLHSTPVHSTPLHSSTFHSTPLLSSPFQSFPF 3259 44555555555555555555555555544433 PP == domain 28 score: 5.1 bits; conditional E-value: 0.0014 Pentapeptide_4 22 rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 +++ F ++ l+++ F+++ll++ f + + +++F T384041_2 3312 SFHSIPFHSTALHSTQFHSTLLQSIPFHSNPFHSTPF 3348 3344444444444444444444444444444444433 PP == domain 29 score: 8.8 bits; conditional E-value: 0.0001 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 +++++++++ F+++ll++++f +++ +++++ l ++ f T384041_2 3395 IRATPFHSTPFHSTLLHSTQFHSTQFHSTPLHSIALHSIPF 3435 45667788889999999999999999988888877777666 PP == domain 30 score: 0.1 bits; conditional E-value: 0.048 Pentapeptide_4 14 snvnFsearlkdcnFteanlsnvnFdkc 41 + + F++++++++ +++++l+++ F+++ T384041_2 3681 HSIAFYSIKFHSTPLQSIPLHSTPFQST 3708 4578999999999999999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.57u 0.41s 00:00:01.98 Elapsed: 00:00:00.84 # Mc/sec: 14028.28 // Query: T384041_3 [L=4119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-45 151.7 15.0 0.072 13.1 0.0 28.5 29 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.7 0.0 0.0038 62 10 56 .. 67 103 .. 58 116 .. 0.53 2 ? -0.9 0.0 0.1 1.7e+03 43 70 .. 211 238 .. 161 252 .. 0.50 3 ! 2.6 0.1 0.0084 1.4e+02 38 67 .. 286 315 .. 254 319 .. 0.38 4 ? 2.0 0.0 0.012 2e+02 18 70 .. 339 391 .. 334 399 .. 0.72 5 ! 9.6 0.0 5.5e-05 0.9 13 75 .. 394 457 .. 382 459 .. 0.86 6 ! 6.4 0.0 0.00054 8.9 3 50 .. 494 541 .. 477 561 .. 0.65 7 ! 7.1 0.0 0.00032 5.3 13 72 .. 713 773 .. 683 778 .. 0.55 8 ! 6.7 0.6 0.00045 7.3 3 60 .. 748 815 .. 742 829 .. 0.67 9 ! 4.7 0.3 0.0019 31 33 68 .. 823 878 .. 788 906 .. 0.45 10 ! 4.1 0.0 0.0028 46 9 69 .. 954 1014 .. 953 1023 .. 0.71 11 ! 5.7 0.1 0.00089 15 3 75 .. 1023 1096 .. 1021 1110 .. 0.56 12 ! 3.3 0.0 0.005 82 5 48 .. 1160 1203 .. 1123 1218 .. 0.50 13 ! 6.4 0.0 0.00052 8.5 12 74 .. 1269 1334 .. 1253 1337 .. 0.73 14 ? 0.3 0.0 0.043 7e+02 11 46 .. 1439 1474 .. 1432 1484 .. 0.80 15 ! 3.9 0.0 0.0033 53 13 77 .] 1516 1581 .. 1507 1581 .. 0.90 16 ! 13.1 0.0 4.4e-06 0.072 8 75 .. 2071 2139 .. 2065 2164 .. 0.89 17 ! 2.7 0.0 0.0077 1.3e+02 25 48 .. 2217 2240 .. 2198 2295 .. 0.49 18 ? -1.0 0.0 0.11 1.7e+03 3 33 .. 2264 2294 .. 2262 2357 .. 0.53 19 ! 4.1 0.0 0.0028 46 26 71 .. 2460 2505 .. 2452 2510 .. 0.81 20 ! 4.4 0.0 0.0023 37 13 46 .. 2527 2560 .. 2516 2583 .. 0.58 21 ! 8.9 0.1 9.1e-05 1.5 8 58 .. 2591 2641 .. 2588 2661 .. 0.72 22 ? -0.5 0.0 0.076 1.2e+03 13 45 .. 2651 2688 .. 2641 2692 .. 0.59 23 ! 4.0 0.0 0.0031 50 9 69 .. 2867 2927 .. 2851 2964 .. 0.59 24 ? 0.1 0.0 0.049 8.1e+02 28 56 .. 3163 3191 .. 3121 3198 .. 0.48 25 ? -3.0 0.0 0.47 7.6e+03 32 58 .. 3261 3287 .. 3253 3287 .. 0.73 26 ? 1.0 0.0 0.027 4.4e+02 27 57 .. 3466 3496 .. 3453 3503 .. 0.81 27 ! 10.2 0.0 3.6e-05 0.58 22 69 .. 3545 3592 .. 3533 3607 .. 0.57 28 ! 4.4 0.1 0.0023 38 9 63 .. 3689 3743 .. 3683 3744 .. 0.86 29 ? 2.3 0.1 0.01 1.7e+02 38 65 .. 3772 3799 .. 3756 3807 .. 0.58 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.0038 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkra 56 + ++ +F ++++++ +F++ +l++ ++ ++l ++ T384041_3 67 S----------VPFHYIRFHSIPIHSIRFHSIQLHSIRLHSIRLHSI 103 3..........334444444444444444444444444444444333 PP == domain 2 score: -0.9 bits; conditional E-value: 0.1 Pentapeptide_4 43 lsdvdfaeadlkrasFsgcdlknvnfsg 70 +++ +a + + + +F+ + +++f+ T384041_3 211 FKSIPVASNPFHSRRFHSIQVHSSRFHS 238 4444444444444444444444444433 PP == domain 3 score: 2.6 bits; conditional E-value: 0.0084 Pentapeptide_4 38 FdkcllsdvdfaeadlkrasFsgcdlknvn 67 ++ + + +f+ +++ +++F ++ +++ T384041_3 286 VHSIRFPSIRFYSIRFYSIRFYSIQFYSIR 315 233334444444444444444444444433 PP == domain 4 score: 2.0 bits; conditional E-value: 0.012 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 F+++++++ F+++++++ F++ +++ f+ + + +++F + ++ f+ T384041_3 339 FASIQFESIPFVSIPFHSIPFESIPFDSIPFQSIPFGSIPFLSIPFDSIPFDS 391 78888888888888888888888888888888888888887666666666655 PP == domain 5 score: 9.6 bits; conditional E-value: 5.5e-05 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 ++ + F+++ l++ +F +++l++ +F++ +++ + + +++++F + + ++ f+ ++++ T384041_3 394 FNSIPFETVLLHSIRFHSIRLHSIRFHSIAFHSIPLVSIPFNSIPFVSNPFHSIPFHSiPFHSI 457 677789999*************************************999999999877567766 PP == domain 6 score: 6.4 bits; conditional E-value: 0.00054 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfae 50 F++ +f+ + + ++F ++ l+ + F ++++++ ++++ +++ +f T384041_3 494 FHWITFHSNAYHSITFHSSPLNYTPFHSIPFHSIRLHSIQVHFIEFHS 541 666666666666666666666666666666666666666665555554 PP == domain 7 score: 7.1 bits; conditional E-value: 0.00032 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgkl 72 l+ + F+++ l + F +++ ++ F+++++++ f + + ++ F+ + ++ f s + T384041_3 713 LDSSAFYAIPLDSIPFHSIPVHSIPFHSNQFHSNPFHSILFHSIKFESIPFHSSPFlSSPF 773 3334455555555555555556666666666666666666666666666666666644455 PP == domain 8 score: 6.7 bits; conditional E-value: 0.00045 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl..........snvnFdkcllsdvdfaeadlkrasFsg 60 F++ f+ k++ + F ++ + ++ F+++++ +++ F++ ++++ f +++ + +F+ T384041_3 748 FHSILFHSIKFESIPFHSSPFLSSPFNSIPFefipfhsi*fHSMPFHSIQFHSIPFHSNQFHSNPFHS 815 55556666677777777777777777777777777677777777777777777777777776666654 PP == domain 9 score: 4.7 bits; conditional E-value: 0.0019 Pentapeptide_4 33 l....................snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 l ++ F+++++++ f+ + +++F + ++++ T384041_3 823 LysiplnlnpfhsipvhsfqvHSIPFRSNSFHSIPFDSIPCHSIQFNSIRFHSIQI 878 25555555555444443333222223333333333333333333333333333333 PP == domain 10 score: 4.1 bits; conditional E-value: 0.0028 Pentapeptide_4 9 nncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 + l+ + F ++r+++ +F +++ ++ ++ ++ ++++ + + +++F + ++ f+ T384041_3 954 HSIRLHSIRFHSIRFHSIRFHSIRVHSIQVHSIPVHYLRVYSIPFYSIPFNSIPFDSIPFE 1014 5556777888888888888888888888888888888888888888888877666666665 PP == domain 11 score: 5.7 bits; conditional E-value: 0.00089 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkda 75 F++ f+ + ++ + F ++r ++ F +++++ +++ + + f + + +++F+ + + ++ f s++++++ T384041_3 1023 FHSIPFHSSPFHSFPFHSIRVHSIAFHCIQFHSIPCHSSPFLLSPFHSIPFESIPFHSMSFHSIPFhSMSFHSI 1096 56666777777777777777777777777775555444444444444444444444444444444422244443 PP == domain 12 score: 3.3 bits; conditional E-value: 0.005 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdf 48 ++ f+ ++ + F ++ l + F+++++++ +Fd+ +++ f T384041_3 1160 SSPFHSIPFHSIPFGTIPLLSIPFESIPFQSITFDSIPFDSIPF 1203 22233333333344444444444444444444444444444433 PP == domain 13 score: 6.4 bits; conditional E-value: 0.00052 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvn..FdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkd 74 ++ + F+++ +++ ++ ++++++ + F+ + l++ +f +++++++F+ + l ++ ++ l+ T384041_3 1269 SFDSIPFESIPFHSIRIHSIPFHSITlpFHFTPLHSIKFHYIQFRSTPFHSSPLHCTPLHSiPLHP 1334 4555556666666666666666666678**********************9999988886645665 PP == domain 14 score: 0.3 bits; conditional E-value: 0.043 Pentapeptide_4 11 cklsnvnFsearlkdcnFteanlsnvnFdkcllsdv 46 + l+ + F + +++ + +++++++ F+++ll+++ T384041_3 1439 SPLHSFPFHPIPFHSFPLHSTPFHSTAFHSTLLQST 1474 556777777777888888888999999999999987 PP == domain 15 score: 3.9 bits; conditional E-value: 0.0033 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 +++++F + l+++ F +++++++ +++ ++++ + + l +++F l ++ f+ l+++ F T384041_3 1516 FHYITFHCIPLHSTPFLSIPFHSTPLHSMPFHSTPLHSIPLHSTPFCSTPLHSTPFHSiPLHSIAF 1581 999999999************999999999999999999999999999999999998867888876 PP == domain 16 score: 13.1 bits; conditional E-value: 4.4e-06 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkda 75 f+ ++ + F + l++++F +++++++ F+++ l+ + + + +++F+ l ++ + s++++++ T384041_3 2071 FHSFPFHSTPFDSTPLHSSTFHYIRFHSTPFHSSALHCTPLHSTPSHSIPFHSTALHSTPLhSTSFYSI 2139 6677799999**************************999999999999999999999999944578876 PP == domain 17 score: 2.7 bits; conditional E-value: 0.0077 Pentapeptide_4 25 dcnFteanlsnvnFdkcllsdvdf 48 ++ F +++++++ F+++ +++ + T384041_3 2217 SSPFHSTPFHSTPFHSTPFHSFVL 2240 222222222222222222222222 PP == domain 18 score: -1.0 bits; conditional E-value: 0.11 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl 33 F++ f+ ++l+ + ++++ l+++ F ++++ T384041_3 2264 FHSIPFHSTALHSTPLNSIPLQSTPFHSIPI 2294 4444555555555555555555555555544 PP == domain 19 score: 4.1 bits; conditional E-value: 0.0028 Pentapeptide_4 26 cnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsgk 71 F ++++ ++ F+++ l++ + ++ + +++F+ l ++ f+ + T384041_3 2460 IAFHSIPFYSTIFHSTPLHSIPLHPIPFDSTPFHSIALHSTPFHST 2505 4688899999999999999999999999999999999999999654 PP == domain 20 score: 4.4 bits; conditional E-value: 0.0023 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdv 46 ++ + F + ++++ F +++++++ F+++ ++++ T384041_3 2527 FHSTPFHSTPFHSTPFHAIPFHSTPFHSTPFHST 2560 4444444444444444444444444444444433 PP == domain 21 score: 8.9 bits; conditional E-value: 9.1e-05 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 f+ +++ +++++ l+++ F +++++++ F+++ l+ +++ + +++F T384041_3 2591 FHSIQFHSITLRSTPLHSTKFLYIRFHSTPFHSSPLHCTSLHSTPSHSTPF 2641 666777777777778888888888888888877777777776665555555 PP == domain 22 score: -0.5 bits; conditional E-value: 0.076 Pentapeptide_4 13 lsnvnFsearlkdcnFteanl.....snvnFdkcllsd 45 l+ + F ++ ++++ F++++l +++ F+++ +++ T384041_3 2651 LHFIPFHSILFHSSPFQSTPLhptplHSMPFHSTAFHS 2688 55556777777777777777744444444444444443 PP == domain 23 score: 4.0 bits; conditional E-value: 0.0031 Pentapeptide_4 9 nncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 + l+ + ++++ l++ +F +++++ ++++l+++ + + l ++sF+ + + f+ T384041_3 2867 HSIPLHSIPLYSSPLHSISFHHIPFHSFPLHSTLFHSIPLLSTPLHSISFHSTPFHSLPFH 2927 4445555555555555555555555444444444444444444444444444444444443 PP == domain 24 score: 0.1 bits; conditional E-value: 0.049 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkra 56 F +++l++++++++ l+++ f + + ++ T384041_3 3163 FISIPLHSTSLHSTPLQSTPFHYTAFHSI 3191 22222244444444444444444444433 PP == domain 25 score: -3.0 bits; conditional E-value: 0.47 Pentapeptide_4 32 nlsnvnFdkcllsdvdfaeadlkrasF 58 +l+++ F++++l++ f + + +++F T384041_3 3261 PLHSTPFHSTSLHSNPFHSTPFHYIPF 3287 567788888888888877777666655 PP == domain 26 score: 1.0 bits; conditional E-value: 0.027 Pentapeptide_4 27 nFteanlsnvnFdkcllsdvdfaeadlkras 57 F ++++++++F+++ l++v + + + +++ T384041_3 3466 AFHSIPFHSTVFHSTPLHSVPLHAIPFHSTP 3496 5888899999999999999988887777665 PP == domain 27 score: 10.2 bits; conditional E-value: 3.6e-05 Pentapeptide_4 22 rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 +++ F ++ ++++ F+++ l+ + f +++ +++F+ + l+++ ++ T384041_3 3545 PFHSVPFHSILFHSTLFHSTPLHCTTFHYIRFHYTPFQSSPLQCTPLH 3592 455555555555555555555555555555555555555555555443 PP == domain 28 score: 4.4 bits; conditional E-value: 0.0023 Pentapeptide_4 9 nncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdl 63 n + l+ F + l+++ +++ +++ F++ ll+++ ++ + + +++F+ +++ T384041_3 3689 NSTPLHSNPFHSTPLHSSPLQSFPFHPIPFHSFLLHSTALNSITFHSTPFHSSTF 3743 66667777888889999999999999999*********************99886 PP == domain 29 score: 2.3 bits; conditional E-value: 0.01 Pentapeptide_4 38 FdkcllsdvdfaeadlkrasFsgcdlkn 65 F+++ l++++f + l +++F+ + + + T384041_3 3772 FHSTALHSTQFHSTLLQSVPFHFNPFHS 3799 5555555555555555555555444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.78 # Mc/sec: 15107.38 // Query: T183232_1 [L=5666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.68 # Mc/sec: 23837.45 // Query: T183232_2 [L=5666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.42s 00:00:02.19 Elapsed: 00:00:00.78 # Mc/sec: 20781.36 // Query: T183232_3 [L=5665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.83 # Mc/sec: 19526.03 // Query: T183175_1 [L=13373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1312 (0.0804612); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.84u 0.74s 00:00:07.58 Elapsed: 00:00:01.32 # Mc/sec: 28983.24 // Query: T183175_2 [L=13373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1142 (0.0700356); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.59u 0.69s 00:00:07.27 Elapsed: 00:00:01.35 # Mc/sec: 28339.17 // Query: T183175_3 [L=13373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1378 (0.0845088); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.40u 0.82s 00:00:08.22 Elapsed: 00:00:01.59 # Mc/sec: 24061.56 // Query: T122149_1 [L=6264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.48s 00:00:02.62 Elapsed: 00:00:00.96 # Mc/sec: 18666.92 // Query: T122149_2 [L=6264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.41s 00:00:02.31 Elapsed: 00:00:00.75 # Mc/sec: 23893.65 // Query: T122149_3 [L=6264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.43s 00:00:02.45 Elapsed: 00:00:00.82 # Mc/sec: 21853.95 // Query: T277297_1 [L=2855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 614 (0.0376549); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.46s 00:00:02.29 Elapsed: 00:00:00.81 # Mc/sec: 10083.54 // Query: T277297_2 [L=2855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 809 (0.0496136); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.52s 00:00:02.45 Elapsed: 00:00:00.99 # Mc/sec: 8250.17 // Query: T277297_3 [L=2854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 712 (0.0436649); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.55s 00:00:02.59 Elapsed: 00:00:01.05 # Mc/sec: 7776.01 // Query: T073911_1 [L=271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.69 # Mc/sec: 1123.60 // Query: T073911_2 [L=271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 1192.75 // Query: T073911_3 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00028 21.1 11.8 0.0025 18.0 11.8 2.2 1 WAP WAP-type (Whey Acidic Protein) 'four-disulfide core Domain annotation for each model (and alignments): >> WAP WAP-type (Whey Acidic Protein) 'four-disulfide core' # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 11.8 1.6e-07 0.0025 15 46 .] 171 212 .. 136 212 .. 0.66 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.6e-07 WAP 15 a.........stcsdeCssDsdCpgnqKCC.ssgcgrvCveP 46 a C +D+dC++ +KCC + cg +C++P T073911_3 171 AskqqskistYCSGIPCINDYDCRDLRKCCgTFRCGLRCIHP 212 044554444344556788************8778**88**98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.67 # Mc/sec: 1152.87 // Query: T090161_1 [L=5140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.38s 00:00:02.11 Elapsed: 00:00:00.83 # Mc/sec: 17716.47 // Query: T090161_2 [L=5140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.42s 00:00:02.27 Elapsed: 00:00:00.88 # Mc/sec: 16709.85 // Query: T090161_3 [L=5140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.43s 00:00:02.20 Elapsed: 00:00:00.81 # Mc/sec: 18153.91 // Query: T023314_1 [L=2737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 10168.95 // Query: T023314_2 [L=2737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 11347.96 // Query: T023314_3 [L=2736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.57 # Mc/sec: 13495.23 // Query: T303073_1 [L=3450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.75 # Mc/sec: 13159.82 // Query: T303073_2 [L=3449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.64 # Mc/sec: 15417.19 // Query: T303073_3 [L=3449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.64 # Mc/sec: 15417.19 // Query: T096931_1 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.54 # Mc/sec: 2892.62 // Query: T096931_2 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.44 # Mc/sec: 3550.03 // Query: T096931_3 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 619 (0.0379615); expected 326.1 (0.02) Passed bias filter: 230 (0.0141052); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 2740.37 // Query: T021200_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 3162.81 // Query: T021200_2 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 2475.24 // Query: T021200_3 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.74 # Mc/sec: 2307.99 // Query: T164584_1 [L=8405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.44s 00:00:02.75 Elapsed: 00:00:00.93 # Mc/sec: 25855.14 // Query: T164584_2 [L=8405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 457 (0.0280265); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.66u 0.52s 00:00:03.18 Elapsed: 00:00:00.91 # Mc/sec: 26423.38 // Query: T164584_3 [L=8405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.48s 00:00:02.98 Elapsed: 00:00:00.89 # Mc/sec: 27017.16 // Query: T111709_1 [L=5228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.47s 00:00:02.42 Elapsed: 00:00:00.88 # Mc/sec: 16995.93 // Query: T111709_2 [L=5227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.40s 00:00:02.12 Elapsed: 00:00:00.86 # Mc/sec: 17387.86 // Query: T111709_3 [L=5227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.39s 00:00:02.22 Elapsed: 00:00:00.78 # Mc/sec: 19171.23 // Query: T337171_1 [L=5655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.41s 00:00:02.04 Elapsed: 00:00:00.79 # Mc/sec: 20478.47 // Query: T337171_2 [L=5655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.11u 0.53s 00:00:03.63 Elapsed: 00:00:00.99 # Mc/sec: 16341.41 // Query: T337171_3 [L=5655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.35s 00:00:01.93 Elapsed: 00:00:00.79 # Mc/sec: 20478.47 // Query: T381601_1 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6640.43 // Query: T381601_2 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 6640.43 // Query: T381601_3 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 7193.80 // Query: T226652_1 [L=1834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 10287.77 // Query: T226652_2 [L=1833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 10084.43 // Query: T226652_3 [L=1833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 10282.16 // Query: T214541_1 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 10334.75 // Query: T214541_2 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 9539.77 // Query: T214541_3 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 9359.77 // Query: T164166_1 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 560 (0.0343432); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3640.55 // Query: T164166_2 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 3640.55 // Query: T164166_3 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3634.94 // Query: T258993_1 [L=2835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.53 # Mc/sec: 15302.74 // Query: T258993_2 [L=2835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.9 6.8 6.6 10 5.7 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00062 10 6 41 .. 1894 1929 .. 1880 1940 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00062 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258993_2 1894 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1929 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11754.28 // Query: T258993_3 [L=2834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 10667.88 // Query: T099963_1 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 7596.53 // Query: T099963_2 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 7210.26 // Query: T099963_3 [L=1486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 7872.58 // Query: T118808_1 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.53 # Mc/sec: 2823.05 // Query: T118808_2 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 2933.75 // Query: T118808_3 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0003 21.0 0.3 0.00047 20.4 0.3 1.2 1 Ribosomal_L22e Ribosomal L22e protein family Domain annotation for each model (and alignments): >> Ribosomal_L22e Ribosomal L22e protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.3 2.9e-08 0.00047 53 85 .. 453 485 .. 449 488 .. 0.89 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 2.9e-08 Ribosomal_L22e 53 skvtvtsevkfskrylkyltkkyLkkkqlrdwl 85 + ++v se++fsk lkyltkky kk++ ++l T118808_3 453 KVIIVFSEKQFSKGPLKYLTKKYSKKNNHCNFL 485 4688999********************988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 2493.69 // Query: T305693_1 [L=2044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 8010.32 // Query: T305693_2 [L=2044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.75 # Mc/sec: 7796.72 // Query: T305693_3 [L=2043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.033 13.5 7.9 0.053 12.8 7.9 1.2 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 7.9 3.2e-06 0.053 196 325 .. 1132 1332 .. 1125 1335 .. 0.44 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.2e-06 Plasmodium_Vir 196 npkkllsklsCknk............................................................................... 209 n+k+ l+klsC+ + T305693_3 1132 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfs 1224 666667777777666777777777777777777777777777777777777777777777777777777777777777777665555555443 PP Plasmodium_Vir 210 .....spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvse 296 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ T305693_3 1225 sssssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSS 1304 222211.....111111111111111111111111111111........11111111211111222222222222222222222222222222 PP Plasmodium_Vir 297 elssnfirniimaaailgtgiflfsylly 325 +ss + + + a+++ + ++ fsy+ly T305693_3 1305 SSSSSSSPSPS-SASASAASFSSFSYFLY 1332 22222222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1165 (0.0714461); expected 326.1 (0.02) Passed bias filter: 447 (0.0274132); expected 326.1 (0.02) Passed Vit filter: 264 (0.0161904); expected 16.3 (0.001) Passed Fwd filter: 69 (0.00423157); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.74u 0.49s 00:00:03.23 Elapsed: 00:00:00.95 # Mc/sec: 6152.29 // Query: T260522_1 [L=2144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 10055.11 // Query: T260522_2 [L=2144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-56 187.9 14.0 1e-55 187.2 14.0 1.3 1 MRFAP1 MORF4 family-associated protein1 Domain annotation for each model (and alignments): >> MRFAP1 MORF4 family-associated protein1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 187.2 14.0 6.2e-60 1e-55 1 119 [] 1463 1581 .. 1463 1581 .. 1.00 Alignments for each domain: == domain 1 score: 187.2 bits; conditional E-value: 6.2e-60 MRFAP1 1 mrPldadearePeedpesllsPvlrevrediaalereharaylrarrklleidslldeikseveaseesaldparsPgaeaeervaklcakaerkake 98 mrP+dadeareP+e+p+s+lsP++r++re++a+lere+ara++rarrkllei+slld+iksevea+e++a++pa+ P+aeaeerva+lca+aerka+e T260522_2 1463 MRPVDADEAREPREEPGSPLSPAPRAGRENLASLERERARAHWRARRKLLEIQSLLDAIKSEVEAEERGARAPAPRPRAEAEERVARLCAEAERKAAE 1560 9************************************************************************************************* PP MRFAP1 99 aarmgkrlvelvrriersess 119 aarmg+r+vel++ri+++e++ T260522_2 1561 AARMGRRIVELHQRIAGCECC 1581 ********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.40s 00:00:01.54 Elapsed: 00:00:00.80 # Mc/sec: 7667.02 // Query: T260522_3 [L=2143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.74 # Mc/sec: 8284.81 // Query: T121817_1 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 1543.94 // Query: T121817_2 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 1870.54 // Query: T121817_3 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 1564.23 // Query: T146183_1 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.64 # Mc/sec: 1627.10 // Query: T146183_2 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 77 (0.00472219); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 1462.65 // Query: T146183_3 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.71 # Mc/sec: 1462.65 // Query: T184059_1 [L=2869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 799 (0.0490004); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.42s 00:00:01.91 Elapsed: 00:00:00.86 # Mc/sec: 9543.86 // Query: T184059_2 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.42s 00:00:01.84 Elapsed: 00:00:00.84 # Mc/sec: 9767.69 // Query: T184059_3 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.76 # Mc/sec: 10795.87 // Query: T100637_1 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 5663.61 // Query: T100637_2 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.74 # Mc/sec: 5280.94 // Query: T100637_3 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-08 33.7 0.0 5.2e-08 32.4 0.0 1.6 1 B12D NADH-ubiquinone reductase complex 1 MLRQ subunit Domain annotation for each model (and alignments): >> B12D NADH-ubiquinone reductase complex 1 MLRQ subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.0 3.2e-12 5.2e-08 9 50 .. 103 144 .. 102 145 .. 0.97 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 3.2e-12 B12D 9 fvaigvavggavfyllRllltnPDVrwnkknnpepWeklknn 50 fv++ +++ga++y+ +l+l+n DV+w++++ e W kl +n T100637_3 103 FVFMKSGGTGAALYVQHLALFNQDVSWDRRHKSERWKKLGPN 144 89************************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 5280.94 // Query: T087308_1 [L=352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.65 # Mc/sec: 1549.25 // Query: T087308_2 [L=351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 1593.89 // Query: T087308_3 [L=351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.70 # Mc/sec: 1434.50 // Query: T129733_1 [L=5467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.41s 00:00:02.13 Elapsed: 00:00:00.80 # Mc/sec: 19550.20 // Query: T129733_2 [L=5466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.45s 00:00:02.34 Elapsed: 00:00:00.87 # Mc/sec: 17973.90 // Query: T129733_3 [L=5466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:00.92 # Mc/sec: 16997.06 // Query: T012480_1 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-06 27.7 1.0 6.3e-06 25.7 0.0 2.1 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.2 0.037 6e+02 8 60 .. 2240 2301 .. 2235 2310 .. 0.76 2 ! 25.7 0.0 3.9e-10 6.3e-06 158 222 .] 2406 2492 .. 2382 2492 .. 0.83 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.037 -EEE......-THHHHCTB-..-.........-------HHHH................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellk 60 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k T012480_1 2240 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINK 2301 7799999999988888888555*******************999998887755443333333 PP == domain 2 score: 25.7 bits; conditional E-value: 3.9e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012480_1 2406 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 2492 256666789***************5555***************************99999988877762256678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 13051.57 // Query: T012480_2 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.2 0.1 1.7e-06 27.6 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.1 1.1e-10 1.7e-06 31 90 .. 2272 2335 .. 2260 2337 .. 0.85 Alignments for each domain: == domain 1 score: 27.6 bits; conditional E-value: 1.1e-10 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012480_2 2272 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 2335 3577889***********888888899989999999999999*****************99877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.68 # Mc/sec: 14203.18 // Query: T012480_3 [L=3375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 27.2 0.2 4.3e-06 26.1 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 0.2 2.6e-10 4.3e-06 1 19 [] 2959 2977 .. 2959 2977 .. 0.98 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 2.6e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012480_3 2959 PFAGSWMKLEAIILSKLSQ 2977 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 13226.44 // Query: T164823_1 [L=2623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 10279.39 // Query: T164823_2 [L=2623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 10719.94 // Query: T164823_3 [L=2622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00077 19.9 0.0 0.0013 19.2 0.0 1.2 1 MgtE_N MgtE intracellular N domain Domain annotation for each model (and alignments): >> MgtE_N MgtE intracellular N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.0 8e-08 0.0013 8 91 .. 1754 1837 .. 1753 1843 .. 0.89 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 8e-08 HCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHHHH CS MgtE_N 8 elleelpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeere 91 ++l+++++++ +++l+ ++ +++ +l+++d++ + ++++++ ++ +++l ++d ++ +l++++ + +++l+ +d + + T164823_3 1754 HILKDINYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQGHKHILKDIDYRRHK 1837 689999999999999999999999999999999999999999999999999999999999999999999999999999877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.68 # Mc/sec: 11031.02 // Query: T296171_1 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.39s 00:00:01.76 Elapsed: 00:00:00.77 # Mc/sec: 10332.43 // Query: T296171_2 [L=2780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 13952.82 // Query: T296171_3 [L=2780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 12827.59 // Query: T248723_1 [L=1920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 9986.90 // Query: T248723_2 [L=1919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 8714.18 // Query: T248723_3 [L=1919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.75 # Mc/sec: 7319.91 // Query: T184554_1 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.73 # Mc/sec: 4659.63 // Query: T184554_2 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 5481.72 // Query: T184554_3 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 6412.58 // Query: T277522_1 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.72 # Mc/sec: 6190.52 // Query: T277522_2 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 8254.02 // Query: T277522_3 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 7684.78 // Query: T336926_1 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 6648.96 // Query: T336926_2 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 6536.27 // Query: T336926_3 [L=1347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 6881.32 // Query: T139946_1 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 8498.64 // Query: T139946_2 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.72 # Mc/sec: 6846.13 // Query: T139946_3 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 9479.25 // Query: T227870_1 [L=3877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.66 # Mc/sec: 16805.21 // Query: T227870_2 [L=3876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:00.65 # Mc/sec: 17059.35 // Query: T227870_3 [L=3876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.40s 00:00:01.87 Elapsed: 00:00:00.73 # Mc/sec: 15189.83 // Query: T156888_1 [L=507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 2197.64 // Query: T156888_2 [L=507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 2339.42 // Query: T156888_3 [L=506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2584.96 // Query: T279097_1 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-27 96.9 0.4 1.7e-27 96.3 0.4 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.3 0.4 1e-31 1.7e-27 67 222 .] 2508 2689 .. 2501 2689 .. 0.94 Alignments for each domain: == domain 1 score: 96.3 bits; conditional E-value: 1e-31 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......... CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra...... 158 +++++++ D +kaF+++++++ l++l++++++ + +++i+ ++ ++ +++ +n+++ e + k+g +qG++lSPllfn++++ l r +r++ T279097_1 2508 TKTTIVSTDAEKAFNKIQHHFMLKTLNKLGIDGTYLKIIRGIYGKPIANIILNEQKLEAFSLKTGKRQGCPLSPLLFNIVLEVLARAIRQEKeikdnq 2605 6799***************************************************99*********************************99****** PP ......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 ...kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 k+v+l+++a D++++ ++ ++ +ll+ ++++ k sg+kin +K++++l+ sg ++++ yLG++l T279097_1 2606 ierKEVKLSLFANDMIVYLENlIISAPKLLKLISNFSKVSGYKINVQKSQAFLYtnnrqaenqimSGllftiATKKIYYLGIQL 2689 *********************7777***************************999999888776622566789********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.70u 0.49s 00:00:02.19 Elapsed: 00:00:00.89 # Mc/sec: 13725.56 // Query: T279097_2 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.94 # Mc/sec: 12995.47 // Query: T279097_3 [L=4270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-84 281.2 18.1 6.2e-78 262.1 8.2 2.3 2 Transposase_22 L1 transposable element 7.9e-11 41.8 0.2 1.3e-10 41.0 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.0076 15.8 2.9 0.015 14.8 2.9 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 2.2 2.2e-09 1.2e-05 7 82 .. 1567 1644 .. 1562 1660 .. 0.86 2 ! 262.1 8.2 1.1e-81 6.2e-78 139 347 .. 1671 1879 .. 1667 1893 .. 0.95 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 2.2e-09 ..XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS Transposase_22 7 ptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeente 82 ++ +nsk++++s+P+++ +ssPa +++++++ ++l + ++++ + ++l + + ke++ k ++e T279097_3 1567 KQHKNPENSKTQNASSPPNDCNSSPAR--AQNWMENEIDKLTEVGFRRwviTNSSKLNKHVLFQYKEVKnLDKRLQEQLT 1644 358899********************9..99****************95556788999999999****988999999654 PP == domain 2 score: 262.1 bits; conditional E-value: 1.1e-81 .XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE.EEES----TT--HHHHHHHHHHHHHHH-HHHHHHT--- CS Transposase_22 139 aslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnl.rliGvdesedeqlkklenilnkiieenfPnlkkeanvi 230 +s +s+i++ eer+s +ed + +i re k rekr+k+ eqslq+i+++v rPnl i v+es+ e+++klen+l++ii+enfPnl+++a+++ T279097_3 1671 TSTNSQINQAEERISEIEDYLAKIRREDKIREKRMKRTEQSLQEIWEYVNRPNL*L-IDVPESDGENGTKLENTLQDIIQENFPNLARQASIQ 1762 57899************************************************665.79********************************** PP EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHH.HTT---EEETTTEEE CS Transposase_22 231 iqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilk.ekkfqPrllyPakls 321 iqei+r P r++s+r+++rhiivr++kv++k+k+l+a+rekG++t+kGk irlt +lsaetl+arre ++++i+k +fqPr++y akls T279097_3 1763 IQEIQRIPLRYSSRRSTPRHIIVRFSKVQTKEKVLRAAREKGQITYKGKLIRLTVNLSAETLQARRE*G-PILNIFK*K-NFQPRISYAAKLS 1853 *****************************************************************9554.899998444.8************ PP EESSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 322 iiidGeikvfidktklrdylstrPal 347 +i++ ik f dk+ lrd++ trPal T279097_3 1854 FISEEGIKSFPDKQILRDFVYTRPAL 1879 *************************8 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.0 0.2 2.5e-14 1.3e-10 1 65 [. 2433 2506 .. 2433 2513 .. 0.87 Alignments for each domain: == domain 1 score: 41.0 bits; conditional E-value: 2.5e-14 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkk 65 ipK+g ++++Rpisl+++d+k+lnk++++++++++++l++++q+gf pg + + ++ ++++++++ + T279097_3 2433 IPKPGrdtikKENFRPISLMKIDVKILNKILVNQIQQHIKELIHHDQVGFIPGMQGWFNIcksvNVIHHINRTN 2506 899999999999********************************************999998865555554333 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 2.9 2.8e-06 0.015 1 18 [. 3137 3154 .. 3137 3155 .. 0.92 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2.8e-06 DUF1725 1 kFagKWMELEnIILSEis 18 +Fa +WM+LE IILS+ + T279097_3 3137 SFAETWMKLEIIILSKLT 3154 6888***********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1263 (0.0774562); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.10u 0.48s 00:00:02.58 Elapsed: 00:00:00.92 # Mc/sec: 13277.98 // Query: T089870_1 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 2823.92 // Query: T089870_2 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.55 # Mc/sec: 3178.12 // Query: T089870_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.72 # Mc/sec: 2427.73 // Query: T057771_1 [L=1626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.59 # Mc/sec: 7884.25 // Query: T057771_2 [L=1626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 7502.76 // Query: T057771_3 [L=1626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6551.70 // Query: T043677_1 [L=2493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.29s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 9905.62 // Query: T043677_2 [L=2493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.84 # Mc/sec: 8490.53 // Query: T043677_3 [L=2492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00012 22.2 0.3 0.00024 21.2 0.3 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.3 1.4e-08 0.00024 1 39 [] 642 677 .. 642 677 .. 0.98 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.4e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++l+++++ ++V+ +C++C+ T043677_3 642 HESTHLGQESLKKL---YFYILHLSALGKTVVPQCVTCR 677 9*************...*********************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.82 # Mc/sec: 8694.13 // Query: T164875_1 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 3553.23 // Query: T164875_2 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 4086.22 // Query: T164875_3 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4372.98 // Query: T361827_1 [L=3945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.64 # Mc/sec: 17634.33 // Query: T361827_2 [L=3945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.47s 00:00:01.94 Elapsed: 00:00:00.82 # Mc/sec: 13763.38 // Query: T361827_3 [L=3944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.44s 00:00:01.96 Elapsed: 00:00:00.78 # Mc/sec: 14465.53 // Query: T227295_1 [L=2821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.82 # Mc/sec: 9841.95 // Query: T227295_2 [L=2820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 10756.72 // Query: T227295_3 [L=2820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00075 19.0 0.0 0.0014 18.1 0.0 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 8.5e-08 0.0014 2 19 .] 2480 2497 .. 2480 2497 .. 0.99 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 8.5e-08 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa++WM E IILSE++Q T227295_3 2480 FAATWMRSEAIILSEVTQ 2497 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.64 # Mc/sec: 12605.53 // Query: T267907_1 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 1816.63 // Query: T267907_2 [L=380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 1725.58 // Query: T267907_3 [L=380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 1753.41 // Query: T245289_1 [L=154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 576 (0.0353244); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 759.60 // Query: T245289_2 [L=154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00032 20.8 0.6 0.00033 20.8 0.6 1.1 1 DUF1777 Protein of unknown function (DUF1777) 0.004 17.9 1.3 0.0041 17.8 1.3 1.1 1 DUF3306 Protein of unknown function (DUF3306) ------ inclusion threshold ------ 0.02 15.2 1.8 0.022 15.1 1.8 1.1 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.044 13.8 3.1 0.051 13.6 3.1 1.2 1 CPSF100_C Cleavage and polyadenylation factor 2 C-termina 0.054 12.1 0.7 0.056 12.0 0.7 1.1 1 Presenilin Presenilin 0.34 10.5 5.1 0.53 9.9 3.8 1.7 2 Connexin Connexin 0.51 9.1 2.6 0.56 9.0 2.6 1.0 1 DUF913 Domain of Unknown Function (DUF913) 3.1 7.5 21.2 4.8 6.9 21.2 1.2 1 Sigma70_ner Sigma-70, non-essential region 9.6 4.1 27.3 11 3.9 27.3 1.0 1 Nop14 Nop14-like family Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.6 1.8e-07 0.00033 73 123 .. 97 146 .. 33 151 .. 0.55 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 1.8e-07 DUF1777 73 esekrsesksskeskersrekekkeskkeeeeededeeeeeveeddedeee 123 e+e+++e+++++e++e+++e+ + e + eeee+e+eeeee+ee++ +eee T245289_2 97 EREREDEEEEEEEKEEEEEEEGEGEGGEGEEEEEEEEEEEEEEEEE-EEEE 146 3333333333333333333333333333333333333333223232.4443 PP >> DUF3306 Protein of unknown function (DUF3306) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 1.3 2.3e-06 0.0041 13 67 .. 99 150 .. 46 153 .. 0.61 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 2.3e-06 DUF3306 13 arapaeapepaqeeeeaaeeeeaaeaee.sveaaapeaeeaeeaeaeeeletlpdv 67 +r ++e+++eee+++eeee+ e e ++e++++e+ee+ee+e+eee+e+l ++ T245289_2 99 ER----EDEEEEEEEKEEEEEEEGEGEGgEGEEEEEEEEEEEEEEEEEEEEELAPL 150 22....22222222222222222222220222222223334555555556666554 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 1.8 1.2e-05 0.022 23 66 .. 100 143 .. 61 153 .. 0.54 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.2e-05 RNA_pol_Rpc4 23 aeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskk 66 +ed+++e++++++e++++ e++ +e e+++e+ee++e+++e+++ T245289_2 100 REDEEEEEEEKEEEEEEEGEGEGGEGEEEEEEEEEEEEEEEEEE 143 33333333333333333333333322222222222222222211 PP >> CPSF100_C Cleavage and polyadenylation factor 2 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 3.1 2.8e-05 0.051 35 80 .. 101 145 .. 63 154 .] 0.44 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 CPSF100_C 35 eaeeeekeeeeeeeeeeeeeeeankkqklaeksekeaseeeseekk 80 e+eeee+ee+eeeeeee+e+e + ++++ e++e+e++eee+ee++ T245289_2 101 EDEEEEEEEKEEEEEEEGEGEGGEGEEEE-EEEEEEEEEEEEEEEE 145 22222222222222222222222222222.2222222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.7 3.1e-05 0.056 279 317 .. 103 141 .. 45 152 .. 0.54 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.1e-05 Presenilin 279 eesaeaeseaeesseekeeeessesseeeeeeeeeeees 317 ee++e+e+e+ee++e + e + e++eeeeeeeeeeee+ T245289_2 103 EEEEEEEKEEEEEEEGEGEGGEGEEEEEEEEEEEEEEEE 141 111111111111111111111111111111111111111 PP >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.2 0.13 2.4e+02 18 37 .. 49 68 .. 43 74 .. 0.79 2 ? 9.9 3.8 0.00029 0.53 75 139 .. 63 142 .. 56 152 .. 0.50 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.13 Connexin 18 vvGkvwltvlfvfRilvlav 37 + k+wl+++f f+ vla T245289_2 49 ASTKFWLFFFFFFKNWVLAG 68 56799********9988865 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00029 Connexin 75 fwvlqiilvst....Psllylvyvlhk........eakeekrkekekkkekkekkeeekk.....kkkekkkkekeeskkrr 139 wvl ++ +t P + ++v++l e++ +e+e++++++e++ee + +++e++++e+ee+++++ T245289_2 63 NWVLAGVVFTTn*lqPIIYFFVHSLIDsld*p*keR--EREDEEEEEEEKEEEEEEEGEGeggegEEEEEEEEEEEEEEEEE 142 577776666655555999999999999777777541..33332222222222222222223455533333333333333322 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 2.6 0.00031 0.56 268 318 .. 103 144 .. 64 153 .. 0.48 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00031 DUF913 268 skseasssssssetkeeekssededvemeda........eaetesesdeeeeseeekek 318 +++e++++++++e+ + e e+e+e++eeee+eee+e+ T245289_2 103 EEEEEEEKEEEEEE----------------EgegeggegE-EEEEEEEEEEEEEEEEEE 144 11111111111111................1222333321.111111111111222222 PP >> Sigma70_ner Sigma-70, non-essential region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 21.2 0.0027 4.8 25 75 .. 87 145 .. 82 153 .. 0.40 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0027 Sigma70_ner 25 iidGflD......eeeeeeeeeeeedeeeeeee.dddd...eeeeeseaadeeelkeeale 75 +id lD e e+eeeeeee+eeeeeee + ++ eeeee+e+++eee +ee e T245289_2 87 LID-SLD*p*kerE-REDEEEEEEEKEEEEEEEgEGEGgegEEEEEEEEEEEEEEEEEEEE 145 566.6679998642.2222222222222233323333343323333333333333333333 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 27.3 0.0062 11 347 392 .. 101 144 .. 82 152 .. 0.33 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.0062 Nop14 347 eeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeede 392 e+e+e+++e+++ ++e+e e e e eee+eeeee+eeeeee e+e T245289_2 101 EDEEEEEEEKEE-EEEEEGEGEGgEGEEEEEEEEEEEEEEEE--EEE 144 112211111111.11111111111111111111111111111..111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1351 (0.0828529); expected 326.1 (0.02) Passed bias filter: 621 (0.0380841); expected 326.1 (0.02) Passed Vit filter: 241 (0.0147798); expected 16.3 (0.001) Passed Fwd filter: 73 (0.00447688); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.65 # Mc/sec: 677.80 // Query: T245289_3 [L=154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-06 28.1 3.5 1.7e-06 27.9 3.5 1.1 1 Connexin Connexin 5.4e-06 26.6 5.8 6.2e-06 26.4 5.8 1.2 1 PcfK PcfK-like protein 0.00014 20.6 1.2 0.00016 20.4 1.2 1.1 1 Folate_carrier Reduced folate carrier 0.00015 22.1 0.6 0.0002 21.7 0.6 1.2 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle t 0.00016 20.9 4.5 0.0002 20.5 4.5 1.1 1 PIP5K Phosphatidylinositol-4-phosphate 5-Kinase 0.0018 18.1 1.3 0.0024 17.7 1.3 1.2 1 EOS1 N-glycosylation protein 0.0018 17.8 4.6 0.0036 16.8 4.6 1.4 1 FAM176 FAM176 family 0.0018 17.2 1.5 0.0019 17.1 1.5 1.1 1 Pex24p Integral peroxisomal membrane peroxin 0.0031 16.8 10.5 0.0043 16.4 10.5 1.1 1 DUF1510 Protein of unknown function (DUF1510) 0.0063 16.6 1.0 0.0068 16.4 1.0 1.1 1 DDHD DDHD domain 0.0078 15.2 0.2 0.0083 15.1 0.2 1.1 1 CLN3 CLN3 protein 0.0088 16.4 8.3 0.012 15.9 8.3 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 ------ inclusion threshold ------ 0.014 15.0 8.9 0.2 11.2 8.9 2.0 1 TerC Integral membrane protein TerC family 0.017 14.0 0.5 0.019 13.8 0.5 1.0 1 DUF913 Domain of Unknown Function (DUF913) 0.018 13.5 0.9 0.023 13.2 0.9 1.1 1 FPN1 Ferroportin1 (FPN1) 0.019 14.6 1.1 0.025 14.2 1.1 1.2 1 NEMP NEMP family 0.033 13.0 2.8 0.05 12.4 2.8 1.2 1 CSG2 Ceramide synthase regulator 0.037 14.0 0.1 0.04 13.8 0.1 1.2 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmemb 0.048 12.4 14.3 0.058 12.1 14.3 1.0 1 HSP90 Hsp90 protein 0.05 13.8 5.7 0.064 13.5 5.7 1.2 1 AIF_C Apoptosis-inducing factor, mitochondrion-ass 0.051 12.9 10.5 0.062 12.6 10.5 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 0.11 10.8 0.3 0.14 10.5 0.3 1.1 1 FHIPEP FHIPEP family 0.12 11.0 19.7 0.17 10.5 19.7 1.1 1 SLD3 DNA replication regulator SLD3 0.12 10.1 11.0 0.16 9.7 11.0 1.1 1 V_ATPase_I V-type ATPase 116kDa subunit family 0.12 11.0 24.9 0.15 10.8 24.9 1.0 1 NARP1 NMDA receptor-regulated protein 1 0.15 12.7 4.5 0.22 12.2 4.5 1.2 1 Rxt3 Histone deacetylation protein Rxt3 0.18 11.4 3.5 0.24 11.0 3.5 1.1 1 TFB6 Subunit 11 of the general transcription fact 0.27 10.8 9.0 0.38 10.3 9.0 1.2 1 EIIBC-GUT_N Sorbitol phosphotransferase enzyme II N-term 0.29 11.1 10.6 0.49 10.3 10.6 1.4 1 Eapp_C E2F-associated phosphoprotein 0.3 10.4 7.7 0.41 10.0 7.7 1.2 1 DUF4366 Domain of unknown function (DUF4366) 0.4 9.4 10.3 0.47 9.1 10.3 1.0 1 Nucleo_P87 Nucleopolyhedrovirus capsid protein P87 0.45 9.9 8.7 0.56 9.6 8.7 1.1 1 TRAP-gamma Translocon-associated protein, gamma subunit 0.59 9.7 0.0 0.59 9.7 0.0 3.0 2 DUF3188 Protein of unknown function (DUF3188) 0.94 9.6 8.9 1.3 9.2 8.9 1.2 1 Peroxin-13_N Peroxin 13, N-terminal region 1 9.7 6.7 1.3 9.3 6.7 1.1 1 DUF4228 Domain of unknown function (DUF4228) 1 8.9 4.8 1.2 8.7 4.8 1.1 1 GCD14 tRNA methyltransferase complex GCD14 subunit 1.2 9.2 12.9 2.3 8.3 12.9 1.4 1 MAP17 Membrane-associated protein 117 kDa, PDZK1-i 1.6 7.2 10.1 2.2 6.7 10.1 1.1 1 SpoVR SpoVR like protein 1.8 7.3 7.6 2.6 6.8 7.6 1.3 1 Serinc Serine incorporator (Serinc) 1.9 7.8 25.2 2.8 7.3 25.2 1.2 1 RNase_H2-Ydr279 Ydr279p protein family (RNase H2 complex com 2 8.4 10.3 2.5 8.1 10.3 1.2 1 Cas_Csy4 CRISPR-associated protein (Cas_Csy4) 2.3 6.1 13.7 2.8 5.8 13.7 1.0 1 DUF2828 Domain of unknown function (DUF2828) 2.8 6.5 17.0 3.7 6.1 17.0 1.0 1 Tim54 Inner membrane protein import complex subuni 3 6.8 30.9 0.66 9.0 27.6 1.5 2 DUF1682 Protein of unknown function (DUF1682) 4.2 7.0 28.7 6.3 6.5 28.7 1.3 1 Coilin_N Coilin N-terminus 4.7 6.4 9.2 6.1 6.0 9.2 1.1 1 GNAT_acetyltr_2 GNAT acetyltransferase 2 6.3 7.1 22.2 8.8 6.6 22.2 1.1 1 AAA_23 AAA domain 7.9 6.0 14.8 10 5.6 14.8 1.1 1 AAA_11 AAA domain Domain annotation for each model (and alignments): >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 3.5 4.9e-09 1.7e-06 69 150 .. 62 152 .. 45 154 .] 0.56 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 4.9e-09 Connexin 69 pishvrfwvlqii.....lvstPsllylvyvlhkeakeekrkekekkkekkekkeeekk....kkkekkkkekeeskkrrlrgkllrlYvl 150 i w+lq+i +s++ ll + + k++++ek+k+k+k+k+k+++k++ek+ +kk+kkkk+k+++kk+++++k + lY+l T245289_3 62 RIGSWLVWCLQLIdynqlYISLSILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEkeekEKKKKKKKKKKKKKKKKKKKKNWLLYLL 152 6777778999987544435677666666666666555555544444444433333333333334444555555555555666777777765 PP >> PcfK PcfK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 5.8 1.8e-08 6.2e-06 79 121 .. 101 143 .. 37 151 .. 0.60 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 1.8e-08 PcfK 79 k.eeekaekradavskkqkekkkakkkkpeeekkkkkkkekkek 121 k + +k+ kr+++ +kk+kek++++kkk+ ++kkkkkkk+kk+k T245289_3 101 KmKRKKKRKRKRKRKKKEKEKEEKEKKKK-KKKKKKKKKKKKKK 143 12222233333333333333333333333.22222222222222 PP >> Folate_carrier Reduced folate carrier # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 1.2 4.8e-07 0.00016 151 231 .. 67 145 .. 48 153 .. 0.56 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 4.8e-07 Folate_carrier 151 llvslakvsystlnyislasvvvalllslfLprpkkslffkkkeaas.kkdekseeeseeseeeenekeeeeeksseesekk 231 l+ l+ ++y++l yisl++++ l+ + L++ +++ +kk+ + +k++k+e+e+ee+e+++++k+++++k++++++kk T245289_3 67 LVWCLQLIDYNQL-YISLSILL--LIHLTSLKKREREKMKRKKKRKRkRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKK 145 5556788889988.78998766..5666677777776666555333303333333333333333333333333333333333 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.6 5.8e-07 0.0002 59 122 .. 95 152 .. 54 153 .. 0.46 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 5.8e-07 Afi1 59 teeeeleeeekknklekrkkkksededdvdeedeeeeddnedldelskdeeekagegepllyvl 122 ++ e ++ ++kk++++krk+kk+e +++ee+e+++++++++ +k +++k+++++ lly+l T245289_3 95 KKREREKMKRKKKRKRKRKRKKKE---KEKEEKEKKKKKKKKK---KKKKKKKKKKKNWLLYLL 152 222222222222222222222222...2222222222222222...222222245666666765 PP >> PIP5K Phosphatidylinositol-4-phosphate 5-Kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 4.5 6e-07 0.0002 158 226 .. 83 151 .. 70 153 .. 0.89 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 6e-07 -EEEEEE-B---------------------------------------------S-EEESSSSEEE-EE CS PIP5K 158 YSLLlGihnsekeekeekkesessssekksekseeeaseeeeeseeeedeegekaseensedgkevyyl 226 S+Ll ih + +++e++k ++++++++k++++++e+++ee+e++++++++++k+++++++++++++yl T245289_3 83 LSILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKKNWLLYL 151 479999*****9**99999999999999999999999999999999999999**************997 PP >> EOS1 N-glycosylation protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 1.3 6.9e-06 0.0024 91 149 .. 70 148 .. 45 153 .. 0.49 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 6.9e-06 EOS1 91 nladaeld..................srevks..rssaaerleskasslrqgksrhkrsvskseakkkrertsskrtld 149 l+ ++++ +re ++ r+ + +r+++++++ +++++++k++++k+++kkk++++++k+++ T245289_3 70 CLQLIDYNqlyislsilllihltslkKREREKmkRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKKNWL 148 4444444444444444444444554422222222333444444444444444444444444444455666666666665 PP >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 4.6 1.1e-05 0.0036 37 93 .. 84 140 .. 79 151 .. 0.41 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 1.1e-05 FAM176 37 tLcllviriscrkdlkrlskkkkklkeesekasededeeeeeeeedsseseaeeels 93 +++ll+ s +k+ +++ k+kkk+k++ +++++++++ee+e+++++++++ +++ + T245289_3 84 SILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKK 140 445555555555555544333333333333333333333333333333333222222 PP >> Pex24p Integral peroxisomal membrane peroxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 1.5 5.6e-06 0.0019 146 255 .. 49 144 .. 28 153 .. 0.54 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 5.6e-06 Pex24p 146 kderlstllfltllltpililllsrlipwrlillvlgailltyH.psvkkvllrllwrllivrlvvkyltglelkkakskekkeeliselesketadiil 244 ++ ++ +++f++l + ++++ +++li + + l+ ill++H +s kk+ ++ ++ ++ +k+k k kk+e+++e ++k++++++ T245289_3 49 QALNFGCFFFFFLRI-GSWLVWCLQLIDYNQLYISLS-ILLLIHlTSLKKRERE-------------KMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKK 133 445555666655555.555555569999988888888.4555551666666666.............666666665544444444444444444443333 PP Pex24p 245 despetrkpkr 255 +++++++k+k+ T245289_3 134 KKKKKKKKKKK 144 33333332333 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 10.5 1.3e-05 0.0043 39 88 .. 95 144 .. 73 147 .. 0.34 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.3e-05 DUF1510 39 ksdeeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedksee 88 k+ e+ek + +++++ + + k+++ke++e++++++k++++++++++k+++ T245289_3 95 KKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKK 144 11122222222222333333333333333333333333333333322222 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 1.0 2e-05 0.0068 122 173 .. 90 141 .. 45 148 .. 0.59 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 2e-05 DDHD 122 rslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaee 173 + ++l+++e++k+++++k +++ ++++ke++++++++++++++++k++++++ T245289_3 90 HLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKK 141 4456666666666665555554444444444433333333333332222221 PP >> CLN3 CLN3 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.2 2.4e-05 0.0083 156 218 .. 85 143 .. 37 152 .. 0.42 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 2.4e-05 CLN3 156 lllllsyflllpkkkskkeakaeeeeeeyekleeeeeeeeeseeeelleseaasaaeeeeeee 218 +lll+ l +++++k ++k+++++++++k ++e+e++e+e++++++++++++++++++ T245289_3 85 ILLLIHLTSLKKREREKMKRKKKRKRKRKRK----KKEKEKEEKEKKKKKKKKKKKKKKKKKK 143 2222222233332222222222111111111....1111111111111111111222222222 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 8.3 3.5e-05 0.012 23 67 .. 99 143 .. 72 149 .. 0.44 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 3.5e-05 RNA_pol_Rpc4 23 aeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkk 67 +e+ k+++k +++ k+k++e++k+eke+++++++kk+kkk++kkk T245289_3 99 REKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKK 143 222222222222222222222222222222222222222221111 PP >> TerC Integral membrane protein TerC family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 8.9 0.00058 0.2 15 83 .. 32 119 .. 30 154 .] 0.72 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00058 TerC 15 lvviallvkklpeeqqkkalllGilgAlvlRill.illavallelfdlilllgglfLlytavkellekr...................e 83 l++i +++++ + ++al +G ++ ++lRi ++ +l+++ + + + ++Ll+ +++ + +r + T245289_3 32 LILIGIIINYYSGKTERQALNFGCFFFFFLRIGSwLVWCLQLIDY-NQLYISLSILLLIHLTSLKKRERekmkrkkkrkrkrkrkkkeK 119 68999**************************98615566788888.9999999999999888888777666666655555554443330 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.5 5.7e-05 0.019 270 320 .. 97 146 .. 67 153 .. 0.46 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5.7e-05 DUF913 270 seasssssssetkeeekssededvemedaeaetesesdeeeeseeekekns 320 +e ++ + ++++k + k++++e+ e+e++e++++++++++++++++k+k++ T245289_3 97 REREKMKRKKKRKRKRKRKKKEK-EKEEKEKKKKKKKKKKKKKKKKKKKKN 146 22222222222222222222222.222222333344444444444444444 PP >> FPN1 Ferroportin1 (FPN1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.9 6.7e-05 0.023 177 259 .. 65 151 .. 53 152 .. 0.74 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 6.7e-05 FPN1 177 slkiaigfilvvnlvsvvveyillakv....YrkvpalaekeekkeeeeeeakeeetkakeaksesslvkrvaeavktvvagWkeYv 259 s+ + + ++ +n + + + ++ll+++ r+ ++++k+++k+++++++ke+e ++ke+k++++ k+ +++ k+ +++W Y+ T245289_3 65 SWLVWCLQLIDYNQLYISLSILLLIHLtslkKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKKNWLLYL 151 5555555555566555555555554441111466789999999999999999999999999999999999999999999****9996 PP >> NEMP NEMP family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 1.1 7.5e-05 0.025 129 220 .. 56 142 .. 29 150 .. 0.44 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 7.5e-05 NEMP 129 lvkWalrlia.lvlilqssldpelavaalilllllknlpeavlsllkkklrkrklfp....lkkpkrrllteeeyeeqgeketkkaleelreycnsp 220 ++ +lr+ + lv lq ++ ++l + + illl + + sl k+ +r++++ k++ +r ++e+e ee+++k++kk + ++ ++ T245289_3 56 FFFFFLRIGSwLVWCLQLIDYNQLYISLSILLL------IHLTSLKKR---EREKMKrkkkRKRKRKRKKKEKEKEEKEKKKKKKKK-KKKKKKKKK 142 555666666623345566666677666666666......111222222...122222111112222223333333333333333332.223333333 PP >> CSG2 Ceramide synthase regulator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 2.8 0.00015 0.05 62 121 .. 83 142 .. 70 150 .. 0.62 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.00015 CSG2 62 aswllllPiarllkeatkssvsekesskenklesnsessleleekvesdeeleekteeek 121 s lll+ +++l k++++++ +k++++++k +++++++ e+e+k++++++ ++k++++k T245289_3 83 LSILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKK 142 4899999*****999998877777776666555555555555554444444443333332 PP >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.1 0.00012 0.04 128 171 .. 97 140 .. 32 150 .. 0.55 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 0.00012 ---------------------------------SS---TTGGG- CS Neur_chan_memb 128 seaeelilskskseskkaklseeqgsekastckckckegeeasp 171 +e+e+++++k+++ +k k++e++++ek++++k k+k+++++++ T245289_3 97 REREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKK 140 22222222222222222222222222222222222211111111 PP >> HSP90 Hsp90 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 14.3 0.00017 0.058 23 77 .. 89 145 .. 73 150 .. 0.42 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00017 EEEEEEEE.XXXX.XXXXXXXXXXX..XXXXXXXXXXXX......XXXXXXXXECEE CS HSP90 23 iyllvekeeekeveeeeeeeeeeeeeeeeeeakveeeeeeeee..kkktkkvketvk 77 i+l++ k++e e + +++++++++++++e++k e+e++++++ kkk+kk k+++k T245289_3 89 IHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKkkKKKKKKKKKKKK 145 555555555555554444333333332222222222222222211333333333333 PP >> AIF_C Apoptosis-inducing factor, mitochondrion-associated, C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 5.7 0.00019 0.064 50 99 .. 99 145 .. 74 153 .. 0.41 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 0.00019 AIF_C 50 kdtpkaaveesseesksekee.easkekseekseeekkkkekkeeeedygk 99 +++ k++++++ ++++++ke+ +++kek+++k++++kkkk+kk+++ k T245289_3 99 REKMKRKKKRKRKRKRKKKEKeKEEKEKKKKKKKKKKKKKKKKKKK----K 145 2222222222222222222220222222222222223333333333....3 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 10.5 0.00018 0.062 31 77 .. 98 145 .. 74 151 .. 0.39 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00018 SpoIIP 31 ekekeeeeeeekeeeeeeeikkeekeeekekee.dseeeeekldkskp 77 e+ek ++++++k + + ++ +ke++e+ek+k++ +++++++k++k+k+ T245289_3 98 EREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKkKKKKKKKKKKKKKK 145 122222222222222222222222222222222122222233333333 PP >> FHIPEP FHIPEP family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.3 0.0004 0.14 281 316 .. 81 128 .. 59 150 .. 0.47 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0004 XXXXXXXXXXXXXXXXXXXXX........................XXXXXXXX CS FHIPEP 281 lllaallallayllkkkkkke.................eeeeekeeeeeeaee 316 + l++ll++ ++lkk+++++ + e+ee+e+++ T245289_3 81 ISLSILLLIHLTSLKKREREKmkrkkkrkrkrkrkkkeK-----EKEEKEKKK 128 555666666666666666444444444444333221110.....111111111 PP >> SLD3 DNA replication regulator SLD3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 19.7 0.0005 0.17 152 206 .. 83 144 .. 81 153 .. 0.49 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0005 HHHHHHHHHHHHT.............T-GGGGS---------------------...----- CS SLD3 152 LQiiliLEilaLe....ekssekqlpglekkkkakekkkeekekkqktkqkkkk...kkkkk 206 L i+l++ + +L+ ek+++k++ + ++k+k+kek+keekekk+k+k+kkkk kkkkk T245289_3 83 LSILLLIHLTSLKkrerEKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKkkkKKKKK 144 77999999999997666444444444444444444444444444444433333321233333 PP >> V_ATPase_I V-type ATPase 116kDa subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 11.0 0.00047 0.16 617 680 .. 80 143 .. 70 147 .. 0.54 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00047 V_ATPase_I 617 lvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee 680 ++ +lll++ lk+++++k k+k+k+k++++++++e+e+ee+e++++++++++++++++++ T245289_3 80 YISLSILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKK 143 5778899999999888888887777766655554443333333333322222222222222222 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 24.9 0.00043 0.15 403 454 .. 92 144 .. 71 148 .. 0.62 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00043 T-S-HHHHHHHHHHHHHH.HHHHHHHHHHHHHHH--.......---------- CS NARP1 403 aelseaerkklrkkakka.ekkaekeeaekakkekekkaaekkakkedeeakk 454 +l+++er+k+++k+k++ ++k++k+e+ek++kek+kk+++kk+kk+++++kk T245289_3 92 TSLKKREREKMKRKKKRKrKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKK 144 56788888888876666635555555555555555544444444444444333 PP >> Rxt3 Histone deacetylation protein Rxt3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 4.5 0.00064 0.22 36 91 .. 85 140 .. 82 151 .. 0.49 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.00064 Rxt3 36 vaaliHsGfirgewaedvdvslldlakkkakkkskeekskdestaekklekkkkkt 91 ++ liH+ ++ + e+++++ ++++k+k+kkk+ke+++k++++++kk++kkkkk+ T245289_3 85 ILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKK 140 66788888886666666666655554433333333333333333222222222222 PP >> TFB6 Subunit 11 of the general transcription factor TFIIH # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 3.5 0.0007 0.24 96 153 .. 89 145 .. 77 150 .. 0.58 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.0007 TFB6 96 VRlksivertRvlvvevlereeeeeeeeedeeededeeeeeeeeeeeeeeedeedede 153 + l+s+ +r R ++ + +r++++++++ +e+e+e++e++++++++++++++++++++ T245289_3 89 IHLTSLKKREREKMKRKKKRKRKRKRKK-KEKEKEEKEKKKKKKKKKKKKKKKKKKKK 145 5677888888888888887776666644.33444444444444333333333333333 PP >> EIIBC-GUT_N Sorbitol phosphotransferase enzyme II N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 9.0 0.0011 0.38 117 160 .. 104 147 .. 77 151 .. 0.53 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.0011 EIIBC-GUT_N 117 ladeeeeeeeeeeeekeeeeekekkketkkkiteqeekekkkgl 160 ++++++++++++eke+ee+++kkk++kkk++++++k+kkk++ T245289_3 104 RKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKKNW 147 33333333444444444444444444444555555555555555 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 10.6 0.0014 0.49 72 110 .. 100 137 .. 74 148 .. 0.38 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.0014 Eapp_C 72 evlkykeaesekkkkkkkkkkkkeekeeeaeaeeaeeee 110 e++k k+++++k+k+k kk+k+keeke++++++++++++ T245289_3 100 EKMKRKKKRKRKRKRK-KKEKEKEEKEKKKKKKKKKKKK 137 1222221111111111.1111111111111111111111 PP >> DUF4366 Domain of unknown function (DUF4366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 7.7 0.0012 0.41 139 186 .. 101 149 .. 89 154 .] 0.34 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.0012 DUF4366 139 avn..aanmsectgketepeaeptaepksseeeekekkkekgasglllll 186 +++ ++ +++ ++k++e+e+e+++++ ++++++k+kkk+k++++ ll T245289_3 101 KMKrkKKRKRKRKRKKKEKEKEEKEKK-KKKKKKKKKKKKKKKKKKNWLL 149 333223333333333333333333333.2222222222222222222222 PP >> Nucleo_P87 Nucleopolyhedrovirus capsid protein P87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 10.3 0.0014 0.47 385 444 .. 93 148 .. 73 151 .. 0.59 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0014 Nucleo_P87 385 svpdkkseasavlptekrkRrrarklqelssdededssdekevDkekerkRRreeDkdfL 444 s++++++e+ + ++krkR+r rk++e +++e+e +++k++ k k++k++++ k++L T245289_3 93 SLKKREREKMK--RKKKRKRKRKRKKKEKEKEEKE--KKKKKKKKKKKKKKKKKKKKNWL 148 34444444333..3455555555555455555555..55666667777777778888887 PP >> TRAP-gamma Translocon-associated protein, gamma subunit (TRAP-gamma) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 8.7 0.0016 0.56 30 110 .. 62 143 .. 39 148 .. 0.56 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0016 TRAP-gamma 30 aipiwlfwrihqmelleslilfvivtllstyllalayk.nvkfvlkhkiavkReeavtrevnkkladdkKiskkekderilw 110 i wl w ++ ++ ++ i++ i+ l+ l+ + ++k k+k kR++ +++ +k+ +++kK +kk k ++ + T245289_3 62 RIGSWLVWCLQLIDYNQLYISLSILLLIHLTSLKKREReKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKK 143 5778999*99999999999999888777665555433313344444444444443322222222222222222333333333 PP >> DUF3188 Protein of unknown function (DUF3188) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.0 0.0017 0.59 2 22 .. 29 49 .. 28 52 .. 0.84 2 ? -1.6 0.2 6 2e+03 6 14 .. 81 89 .. 79 97 .. 0.73 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.0017 DUF3188 2 AplLillgllillysqrqgsd 22 + Lil+g++i+ ys +++ T245289_3 29 NMTLILIGIIINYYSGKTERQ 49 589***********9877766 PP == domain 2 score: -1.6 bits; conditional E-value: 6 DUF3188 6 illgllill 14 i+l++l+l+ T245289_3 81 ISLSILLLI 89 778888776 PP >> Peroxin-13_N Peroxin 13, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 8.9 0.0037 1.3 65 127 .. 88 151 .. 75 154 .] 0.43 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.0037 Peroxin-13_N 65 ifalirllkkllrkllglllekkkkekskaeefwkkfessskkkeekeskeekkk..isskplll 127 + l l k+ +k+ + +++k+k++++k+e+ +++ e+++kkk++k+ k++kkk ++ + l l T245289_3 88 LIHLTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKK-KKKKKKkkKKNWLLYL 151 444444555555666666544444444444444333333333333222.2222221244444422 PP >> DUF4228 Domain of unknown function (DUF4228) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 6.7 0.0039 1.3 88 139 .. 95 139 .. 72 149 .. 0.30 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.0039 DUF4228 88 taedvaalalkaskalakkskkskrssaakk.srsspsesskgsksrgrsssr 139 ++ + +++ ++k+ ++k+k+ +kk ++++++e++k++k++++++++ T245289_3 95 KKREREKMK--RKKKRKRKRKR------KKKeKEKEEKEKKKKKKKKKKKKKK 139 222222221..11111111111......1111111111111111111111111 PP >> GCD14 tRNA methyltransferase complex GCD14 subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 4.8 0.0034 1.2 186 238 .. 101 147 .. 70 154 .] 0.39 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0034 GCD14 186 eidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkgh 238 +++ +kr kr k+k+++++k++k ++k+ k +++ k ++ k T245289_3 101 KMKRKKKR------KRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKKNW 147 11111111......111111111112222222222222233333333444444 PP >> MAP17 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 12.9 0.0068 2.3 64 99 .. 102 140 .. 80 150 .. 0.32 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0068 MAP17 64 eeeetfrmeankeedvslskeekke...eekekkekkaa 99 ++++ r ++k ++ +++keek++ ++k+kk+kk++ T245289_3 102 MKRKKKRKRKRKRKKKEKEKEEKEKkkkKKKKKKKKKKK 140 111111111111111111111111110011111111111 PP >> SpoVR SpoVR like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 10.1 0.0066 2.2 163 228 .. 88 151 .. 75 153 .. 0.49 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0066 SpoVR 163 lvdrykrkekkkleeeekrkkereeyekqvedlwrtleekkkkeeeekekeekfpeepeedlllFl 228 l++ ++ k++++++ ++k+k++r++++k+ e+ +e++kkk++++k+k++k +++ +++ ll+l T245289_3 88 LIHLTSLKKREREKMKRKKKRKRKRKRKKKEKE--KEEKEKKKKKKKKKKKKKKKKKKKKNWLLYL 151 455555444444444444444443333333333..3333444444444444577777778877776 PP >> Serinc Serine incorporator (Serinc) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 7.6 0.0076 2.6 298 355 .. 88 144 .. 30 154 .] 0.44 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0076 Serinc 298 Ystlraasssqveklralkaaeeegalpesaleeeeeeeeekekeeeekkvlddekeg 355 + l++ ++ ++ek++ k+ +++++ +++++ e+ee+e++k+k++++kk+ +++k++ T245289_3 88 LIHLTSLKKREREKMKRKKKRKRKRKRKKKEK-EKEEKEKKKKKKKKKKKKKKKKKKK 144 22222222233445543333333322222221.1111222122222222222222222 PP >> RNase_H2-Ydr279 Ydr279p protein family (RNase H2 complex component) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 25.2 0.0081 2.8 231 295 .. 90 143 .. 69 147 .. 0.43 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0081 RNase_H2-Ydr279 231 ylaelaklraeaealrsaalnvseerkreakeekaekKrkkeeee..kkkakesrgvkklkKvntsg 295 +l++l+k ++e++ r++ +rk +++ kK+ ke+ee k +k+++++kk+kK ++++ T245289_3 90 HLTSLKKREREKM-KRKK------KRK----RKRKRKKKEKEKEEkeK--KKKKKKKKKKKKKKKKK 143 4555555544444.2221......122....22333333333233221..22222222222221222 PP >> Cas_Csy4 CRISPR-associated protein (Cas_Csy4) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 10.3 0.0074 2.5 96 134 .. 96 134 .. 68 146 .. 0.58 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0074 Cas_Csy4 96 rRvqakssaerlarrrlkrhglseeealkrikkskeqkl 134 +R+++k++++++++r+ kr+++++e+ +k+ kk+k++k+ T245289_3 96 KREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKK 134 566666665555555555544433333333333222221 PP >> DUF2828 Domain of unknown function (DUF2828) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 13.7 0.0084 2.8 114 171 .. 85 141 .. 80 153 .. 0.36 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0084 DUF2828 114 ilalavegelvlkdpkkvlnvkkekkkeekkkkkkkkeeakekrkekeaeraekllek 171 il l+ +l++++ +k++++kk+k+k+++kkk+k+ +e+kek+k+k++++++k +k T245289_3 85 ILLLIHLTSLKKREREKMKRKKKRKRKRKRKKKEKE-KEEKEKKKKKKKKKKKKKKKK 141 555555555533333343333333333332222222.222222222222222222111 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 17.0 0.011 3.7 197 249 .. 98 143 .. 88 151 .. 0.28 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.011 Tim54 197 eeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkv 249 e e++++++++++++k++++e+e +eeke++k++++++++k+kkkk+ T245289_3 98 EREKMKRKKKRKRKRKRKKKEKE-------KEEKEKKKKKKKKKKKKKKKKKK 143 22222222222222211111111.......11111111111111111212222 PP >> DUF1682 Protein of unknown function (DUF1682) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.1 4.4 1.5e+03 9 25 .. 31 47 .. 30 51 .. 0.83 2 ? 9.0 27.6 0.002 0.66 262 317 .. 93 141 .. 63 146 .. 0.39 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 4.4 DUF1682 9 lvllllyvlnyfiGkrk 25 ++l+ +++ny+ Gk++ T245289_3 31 TLILIGIIINYYSGKTE 47 5789999*******986 PP == domain 2 score: 9.0 bits; conditional E-value: 0.002 DUF1682 262 ktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyeekerkk 317 + +++ +k+k++++++++ +++kk+e++k+e+e+k +++++K ++k++kk T245289_3 93 SLKKREREKMKRKKKRKRK--RKRKKKEKEKEEKEKK-----KKKKKKKKKKKKKK 141 4444444433333333332..2211222222222221.....11111111111222 PP >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 28.7 0.018 6.3 92 137 .. 96 141 .. 81 146 .. 0.45 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.018 Coilin_N 92 edsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkk 137 +++re+ +++++ + ++k+kk+ek++ee++++k+++++k+kkkkkk T245289_3 96 KREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKK 141 3344443333333333333333333333333333333333333333 PP >> GNAT_acetyltr_2 GNAT acetyltransferase 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.2 0.018 6.1 123 177 .. 91 145 .. 77 152 .. 0.44 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.018 GNAT_acetyltr_2 123 yyegklssleeeeekeeeekeekeeeeeevsleeeklkprkelpelllklserkp 177 + k ++ e+ ++k+++++++k++++e++++e+ek k++k+ ++ k++++k T245289_3 91 LTSLKKREREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKKK 145 4444444444444444444444333333333333443333333333333333333 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 22.2 0.026 8.8 130 187 .. 81 144 .. 67 148 .. 0.39 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.026 AAA_23 130 eilnlilflgqer......fekfelkdkkerleelekeleeledekklleklekekekeeelee 187 ++l+++l+++ + ++++++k++k + + +ke+e++e+ekk+ +k++k+k+k+++ ++ T245289_3 81 ISLSILLLIHLTSlkkrerEKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKKKKKKKKKKKKKKK 144 4444444444444222111333333333333333333333333333333333322222222222 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 14.8 0.03 10 112 167 .. 97 142 .. 76 149 .. 0.32 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.03 AAA_11 112 kvekrlekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqe 167 + +++++ +k++ ++ k+ +ke+ek++ke +++++ k+k+k+k++++ T245289_3 97 REREKMKRKKKRKRKRKRKKKEKEKEEKEKKKKKK----------KKKKKKKKKKK 142 22222222111111111111111111111111111..........11111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 4143 (0.254078); expected 326.1 (0.02) Passed bias filter: 1417 (0.0869005); expected 326.1 (0.02) Passed Vit filter: 613 (0.0375935); expected 16.3 (0.001) Passed Fwd filter: 146 (0.00895376); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 48 [number of targets reported over threshold] # CPU time: 1.21u 0.45s 00:00:01.66 Elapsed: 00:00:00.75 # Mc/sec: 587.42 // Query: T114670_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4481.97 // Query: T114670_2 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 3702.49 // Query: T114670_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 3698.35 // Query: T300739_1 [L=1019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-09 36.4 0.7 7.3e-09 35.5 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.3e-06 27.5 4.4 4.9e-06 26.4 4.4 1.5 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.7 8.9e-13 7.3e-09 2 62 .. 494 555 .. 493 558 .. 0.86 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 8.9e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300739_1 494 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 555 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 4.4 6.1e-10 4.9e-06 10 82 .. 409 481 .. 396 488 .. 0.54 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 6.1e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300739_1 409 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 481 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 4164.55 // Query: T300739_2 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.72 # Mc/sec: 4044.90 // Query: T300739_3 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.5 5.1 0.026 14.5 5.1 1.6 1 Mucin-like Mucin-like 6.7 5.7 8.3 10 5.1 8.3 1.1 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 5.1 3.2e-06 0.026 7 87 .. 316 396 .. 307 400 .. 0.85 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 3.2e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300739_3 316 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 396 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 8.3 0.0012 10 242 305 .. 338 396 .. 311 411 .. 0.62 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0012 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300739_3 338 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 396 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.71 # Mc/sec: 4101.87 // Query: T110427_1 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-08 34.0 0.8 3.6e-08 32.7 0.8 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.8 2.2e-12 3.6e-08 1 19 [] 3198 3216 .. 3198 3216 .. 0.98 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 2.2e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T110427_1 3198 SFAGTWMKLETIILSKLTQ 3216 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.43s 00:00:01.87 Elapsed: 00:00:00.84 # Mc/sec: 11221.95 // Query: T110427_2 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.75 # Mc/sec: 12568.58 // Query: T110427_3 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 680 (0.0417024); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.37s 00:00:01.87 Elapsed: 00:00:00.81 # Mc/sec: 11637.57 // Query: T293992_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 11148.82 // Query: T293992_2 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 11663.38 // Query: T293992_3 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.64 # Mc/sec: 11845.62 // Query: T351159_1 [L=2790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-21 73.5 7.1 1.8e-20 72.4 4.2 2.6 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.094 12.8 0.0 0.2 11.8 0.0 1.5 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.057 4.6e+02 25 38 .. 1683 1696 .. 1679 1698 .. 0.80 2 ! 72.4 4.2 2.2e-24 1.8e-20 9 79 .. 1868 1937 .. 1848 1938 .. 0.86 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.057 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351159_1 1683 EKLSKNAMLTIVWS 1696 45569********8 PP == domain 2 score: 72.4 bits; conditional E-value: 2.2e-24 Transposase_1 9 aqWldkgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 + g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351159_1 1868 S-----GWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1937 4.....556666666666666666*************************************************98 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 2.4e-05 0.2 5 23 .. 2715 2733 .. 2712 2739 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 2.4e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351159_1 2715 NLVCQVFPREYLANHNCGR 2733 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.63 # Mc/sec: 12669.39 // Query: T351159_2 [L=2790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 12669.39 // Query: T351159_3 [L=2789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.049 13.4 0.1 0.11 12.2 0.1 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 7e-06 0.11 15 43 .. 1872 1904 .. 1869 1911 .. 0.79 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 7e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351159_3 1872 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1904 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 11733.61 // Query: T135769_1 [L=566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.80 # Mc/sec: 2024.04 // Query: T135769_2 [L=566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 2453.38 // Query: T135769_3 [L=566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2840.75 // Query: T280436_1 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-98 328.4 23.5 1e-96 323.8 23.5 2.1 1 Transposase_22 L1 transposable element 0.00031 20.2 0.2 0.00068 19.1 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 323.8 23.5 1.3e-100 1e-96 3 324 .. 650 937 .. 647 940 .. 0.93 Alignments for each domain: == domain 1 score: 323.8 bits; conditional E-value: 1.3e-100 XXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX......... CS Transposase_22 3 kkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkekeentekqlkiikekqent 95 kk+ rk +nsk +++s+P+ke+ss Pa e++ ++df++lr+e++ + +++++lke+++++ ke + +k ++e + T280436_1 650 KKQ---SRKAENSKNQSASPPPKERSSLPAM--EQSLTENDFDKLREEGF-R*SNFSKLKEEVRTHRKEAKnLEKRLDEWLTRITS--------- 729 566...9************************..*****************.5557899***********98777888876665555......... PP .........XXXXXXXXXX.XXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHT CS Transposase_22 96 skqvmemnkellelktkvd.elkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkil.eqslqviqdtvk 188 v + ++l+elkt el++e+ s+ssr d+leer + +ed+++e++re k+rekr+k++ lq+i+d+vk T280436_1 730 ---VQKSLNDLMELKTM-A*ELRDECT------------------SFSSRFDQLEERAAVIEDQMNEMKREEKFREKRVKRN*R-RLQEIWDYVK 801 ...3334458*****95.5669****9..................9*********************************99776.59******** PP TTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEE CS Transposase_22 189 rPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirl 283 rPnl liGv++s+ e+++klen+l++ii+enfPnl+++an++iqei+rtP+r++s+ra+ r iivr+t+v++k+k+l+a+rekG+vt kGkP rl T280436_1 802 RPNLCLIGVPQSDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRTPQRYSSRRATQRLIIVRFTEVEMKEKMLRAAREKGQVTHKGKPNRL 896 *********************************************************************************************** PP EE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEES CS Transposase_22 284 tadlsaetlkarrewtdviqilkekkfqPrllyPaklsiii 324 tadlsaetl+arre +++++ilkek+fqPr++yPakls+ + T280436_1 897 TADLSAETLQARRECGPIFNILKEKNFQPRISYPAKLSFKV 937 **************************************975 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.2 8.4e-08 0.00068 6 19 .] 2330 2343 .. 2326 2343 .. 0.98 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 8.4e-08 DUF1725 6 WMELEnIILSEisQ 19 WM+LE+IILS+ sQ T280436_1 2330 WMKLETIILSKLSQ 2343 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 499 (0.0306022); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.39u 0.39s 00:00:01.77 Elapsed: 00:00:00.85 # Mc/sec: 9551.81 // Query: T280436_2 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-36 124.9 2.6 4.6e-36 124.3 2.6 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 124.3 2.6 2.8e-40 4.6e-36 1 208 [. 1603 1829 .. 1603 1850 .. 0.93 Alignments for each domain: == domain 1 score: 124.3 bits; conditional E-value: 2.8e-40 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl +++ k+lnk++a + ++++kl++++ +gf pg + + ++ ++++++++ ++k+++++++D +kaFd+++ + T280436_2 1603 IPKPGrdttkKENFRPISLKNINAKILNKILAn*iQ---QHIKKLIHHDHVGFNPGMQGWFNIcksiNVIQHINRTNNKNHMIISIDAEKAFDKIQQH 1697 899999999999******************864434...688888*********************99999**999********************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++ ++++++ + +++i++++ ++++++ +ng++ ++ k+g++qG++lSPl fn++++ l +r++ ++v+l+++a ++++ + T280436_2 1698 FMLKTRNKLGIDGTYLKIIRAIYDKPTANIILNGQKLAAFPLKTGTRQGCPLSPLQFNIVLEVLATAIRQEKeikgiqlgkEEVKLSLFAGNMILYLE 1795 ***********************************99*********************************99************************** PP SHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 176 skee.lqelleaveewlkesglkinpeKtklvlf 208 ++ +q+ll+ ++++ k sg+ki+ +K++++l+ T280436_2 1796 NPIIsAQNLLKLISNFSKVSGYKISVQKSQAFLY 1829 *5555**************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.70 # Mc/sec: 11594.54 // Query: T280436_3 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0054 16.3 7.8 0.0093 15.6 7.8 1.3 1 DUF4391 Domain of unknown function (DUF4391) Domain annotation for each model (and alignments): >> DUF4391 Domain of unknown function (DUF4391) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 7.8 5.7e-07 0.0093 97 241 .. 1312 1438 .. 1283 1438 .. 0.84 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 5.7e-07 DUF4391 97 lsyddevllslahkRlnqadkgkivleeefitewl..pedeeslelekasdieaafldalalknlpktdlkalYqelidklialeaarltgvfslndk 192 ls++ ++l l k+l q+ ++ ++l++ + + e+++++++ f+ ++ ++++ Yq+l d++ a+ g f++ ++ T280436_3 1312 LSDHTAIKLELRIKKLTQNHSTTWKLNNLLLNDYWvhNEMKAEIKM---------FF-------ETNENKDTTYQNLWDTFKAVCR----GKFTALNA 1389 5666789999999***************999887723222333333.........44.......5899999999999999999988....99999888 PP DUF4391 193 ediaerrerlreieelekeiaklkkklkkekqfnrkvelnlelkkleke 241 ++ ++ r + +++++ ke++k +k ++k+ ++ ++++elk++e++ T280436_3 1390 HKRNQERPKIDTLTSQLKELEKQEKTHSKASRRQEITKIRAELKEIETQ 1438 99999999999999999999999999********************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 617 (0.0378388); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.75 # Mc/sec: 10821.57 // Query: T324265_1 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1048 (0.0642708); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 4729.60 // Query: T324265_2 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.74 # Mc/sec: 3962.64 // Query: T324265_3 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 935 (0.0573409); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.42s 00:00:01.38 Elapsed: 00:00:00.78 # Mc/sec: 3759.42 // Query: T126495_1 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.091 12.7 2.0 26 4.9 0.0 3.8 4 Fer4_19 Divergent 4Fe-4S mono-cluster Domain annotation for each model (and alignments): >> Fer4_19 Divergent 4Fe-4S mono-cluster # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.0016 26 12 28 .. 184 200 .. 181 204 .. 0.88 2 ? 4.7 0.0 0.0018 30 14 28 .. 218 232 .. 214 236 .. 0.88 3 ? -3.7 0.0 0.77 1.3e+04 19 28 .. 271 280 .. 270 281 .. 0.82 4 ? -1.5 0.1 0.15 2.5e+03 15 28 .. 321 334 .. 318 336 .. 0.80 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0016 Fer4_19 12 relCihsgnCvkglpev 28 r+ C+ g+Cv+g ++v T126495_1 184 RGFCERRGFCVRGGGSV 200 679**********9988 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0018 Fer4_19 14 lCihsgnCvkglpev 28 lC+ g+Cv+g ++v T126495_1 218 LCERRGFCVRGGGSV 232 8**********9988 PP == domain 3 score: -3.7 bits; conditional E-value: 0.77 Fer4_19 19 gnCvkglpev 28 g Cv+g ++v T126495_1 271 GDCVRGGGSV 280 68***99887 PP == domain 4 score: -1.5 bits; conditional E-value: 0.15 Fer4_19 15 CihsgnCvkglpev 28 C g Cv+g ++v T126495_1 321 CVRGGDCVRGGGSV 334 77778999998887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.74 # Mc/sec: 1940.73 // Query: T126495_2 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.63 # Mc/sec: 2275.04 // Query: T126495_3 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.77 # Mc/sec: 1861.40 // Query: T259454_1 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-10 41.7 48.0 1.2e-06 28.8 17.2 4.1 2 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 17.2 7.6e-11 1.2e-06 2 70 .. 236 308 .. 235 309 .. 0.91 2 ! 17.4 24.8 2.7e-07 0.0044 2 67 .. 302 371 .. 301 455 .. 0.92 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 7.6e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259454_1 236 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 308 9****************98779******9988******985567*******9*********9998.9****976 PP == domain 2 score: 17.4 bits; conditional E-value: 2.7e-07 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259454_1 302 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 371 8***************997669*****999889*****985557*******99********7777.89998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.78 # Mc/sec: 11006.86 // Query: T259454_2 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-07 29.5 35.7 1.3e-05 25.0 10.3 9.4 11 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 10.3 8.2e-10 1.3e-05 7 98 .. 48 139 .. 45 141 .. 0.94 2 ! 21.2 17.4 1.3e-08 0.00021 5 98 .. 134 227 .. 131 230 .. 0.95 3 ! 7.3 9.2 0.00028 4.6 5 96 .. 200 291 .. 197 296 .. 0.80 4 ? -0.1 3.4 0.055 8.9e+02 27 91 .. 266 330 .. 235 350 .. 0.52 5 ? -3.0 7.0 0.45 7.4e+03 25 92 .. 308 375 .. 284 384 .. 0.57 6 ? -8.2 13.5 1 1.6e+04 18 73 .. 376 414 .. 343 433 .. 0.44 7 ? -6.6 6.1 1 1.6e+04 14 34 .. 1215 1235 .. 1206 1259 .. 0.40 8 ? -7.7 7.9 1 1.6e+04 44 69 .. 1393 1419 .. 1342 1445 .. 0.62 9 ? -5.4 1.5 1 1.6e+04 24 77 .. 1486 1495 .. 1482 1506 .. 0.32 10 ? -3.0 0.1 0.45 7.3e+03 11 36 .. 1661 1688 .. 1657 1695 .. 0.38 11 ? -3.4 3.8 0.58 9.5e+03 18 40 .. 2157 2179 .. 2139 2193 .. 0.54 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 8.2e-10 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259454_2 48 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 139 6889999*********************************************************************************9996 PP == domain 2 score: 21.2 bits; conditional E-value: 1.3e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259454_2 134 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 227 6689999*************************************************************************************96 PP == domain 3 score: 7.3 bits; conditional E-value: 0.00028 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 s +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259454_2 200 SAGQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 291 55778888888888888888888888888888888888888888888888888888888888888888888888888888888877766665 PP == domain 4 score: -0.1 bits; conditional E-value: 0.055 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdps 91 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ T259454_2 266 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQA 330 33444444444444444444444444444444444444444444444444444444444444443 PP == domain 5 score: -3.0 bits; conditional E-value: 0.45 Mucin-like 25 sssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpss 92 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p p s T259454_2 308 ALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAPGS 375 34445555555555555555555555555555555555555555555555555555555555555544 PP == domain 6 score: -8.2 bits; conditional E-value: 1 Mucin-like 18 gepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssyg 73 ++ sr+P ++ ++ sr+p +++r+p +p ++ s + T259454_2 376 QQDSRTPAPGTQQDSRTPTPGTQQDSRTP-----------------TPVPQALSRT 414 22223333333333333333333333222.................2223333333 PP == domain 7 score: -6.6 bits; conditional E-value: 1 Mucin-like 14 sssygepsraPsssytapsra 34 sss + + +Ps+ +ps+a T259454_2 1215 SSSREPTQLPPSEPAPTPSPA 1235 222222223444443333322 PP == domain 8 score: -7.7 bits; conditional E-value: 1 Mucin-like 44 rdpsssytap.qsapsssytappstps 69 ++p ss t + p+ s t+pp +ps T259454_2 1393 HPPNSSPTHLcTHLPTKSQTQPPVRPS 1419 344444444334445555555555554 PP == domain 9 score: -5.4 bits; conditional E-value: 1 Mucin-like 24 Psssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppa 77 Pss a++ T259454_2 1486 PSSPAPAQP--------------------------------------------C 1495 222222222............................................1 PP == domain 10 score: -3.0 bits; conditional E-value: 0.45 Mucin-like 11 aspsssygepsr..aPsssytapsraps 36 + p+ss+ + s +P + + ps+ap T259454_2 1661 RRPCSSILQKSTlrPPDAGGDLPSQAPH 1688 3333333333222233333333333333 PP == domain 11 score: -3.4 bits; conditional E-value: 0.58 Mucin-like 18 gepsraPsssytapsrapsssyg 40 +p+ aPsss + +++p s+ T259454_2 2157 SWPHLAPSSSPGRAAPRPDTSCQ 2179 34555555555555555555443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.72 # Mc/sec: 11924.10 // Query: T259454_3 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-15 56.3 102.0 9.8e-07 29.1 16.0 4.8 7 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 16.0 6e-11 9.8e-07 2 70 .. 49 121 .. 48 122 .. 0.90 2 ! 23.9 23.2 2.6e-09 4.3e-05 3 68 .. 83 152 .. 70 166 .. 0.40 3 ! 26.8 19.6 3.2e-10 5.2e-06 3 70 .. 116 187 .. 114 199 .. 0.48 4 ! 26.5 19.2 3.9e-10 6.3e-06 2 70 .. 148 220 .. 147 235 .. 0.91 5 ! 10.1 4.7 5.3e-05 0.87 2 33 .. 192 225 .. 191 250 .. 0.79 6 ? -2.5 0.3 0.43 7e+03 44 61 .. 658 692 .. 654 708 .. 0.64 7 ? -4.0 0.1 1 1.6e+04 26 36 .. 1477 1487 .. 1475 1489 .. 0.48 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 6e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259454_3 49 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 121 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 23.9 bits; conditional E-value: 2.6e-09 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa T259454_3 83 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPA 152 3444444444444443332233343333333344444332222444444344444444443332.334433 PP == domain 3 score: 26.8 bits; conditional E-value: 3.2e-10 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259454_3 116 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 187 5666666666666665544355665555555555555543334555555555555555554443.44444432 PP == domain 4 score: 26.5 bits; conditional E-value: 3.9e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259454_3 148 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 220 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 5 score: 10.1 bits; conditional E-value: 5.3e-05 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gs 33 srTPa +s+++srTPa g + +srTpa g++ +s T259454_3 192 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGTQqDS 225 7899999999999999876658888888877433 PP == domain 6 score: -2.5 bits; conditional E-value: 0.43 CTD 44 TPawd..........aagsrTPay.......ktaw 61 TP+ + +gs P++ + +w T259454_3 658 TPHPGcdgaaihtacSKGSAAPGWtctvlghCRTW 692 66666666666666677899998864444444444 PP == domain 7 score: -4.0 bits; conditional E-value: 1 CTD 26 payggagsrtP 36 pa++g gsr P T259454_3 1477 PAWHGPGSRHP 1487 34444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:00.78 # Mc/sec: 11006.86 // Query: T027756_1 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-06 26.1 19.1 1.3e-05 25.5 19.1 1.2 1 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 ------ inclusion threshold ------ 0.12 11.2 17.0 0.68 8.7 18.3 1.5 2 Paf1 Paf1 0.14 11.7 8.2 0.26 10.9 8.2 1.3 1 FAM176 FAM176 family 0.16 11.2 12.3 0.25 10.6 12.3 1.1 1 NOA36 NOA36 protein 0.27 11.1 7.5 0.47 10.3 7.5 1.3 1 RXT2_N RXT2-like, N-terminal 0.43 8.6 14.1 0.59 8.2 14.1 1.0 1 Nop14 Nop14-like family 0.53 11.1 3.0 1.1 10.1 3.0 1.4 1 AIM3 Altered inheritance of mitochondria protein 0.54 9.7 14.6 0.8 9.1 14.6 1.2 1 PPP4R2 PPP4R2 0.6 9.3 13.8 0.83 8.8 13.8 1.1 1 CDC27 DNA polymerase subunit Cdc27 0.64 9.3 15.8 0.99 8.7 15.8 1.2 1 DUF1510 Protein of unknown function (DUF1510) 0.78 9.4 14.3 1.2 8.7 14.3 1.2 1 Pox_Ag35 Pox virus Ag35 surface protein 1 9.5 9.8 1.7 8.8 9.8 1.2 1 Vfa1 AAA-ATPase Vps4-associated protein 1 1.5 9.1 5.7 2.8 8.2 5.7 1.4 1 DUF1840 Domain of unknown function (DUF1840) 1.9 7.2 3.9 2.8 6.7 3.9 1.1 1 DUF913 Domain of Unknown Function (DUF913) 2.4 7.3 19.3 3.6 6.8 19.3 1.1 1 DUF4746 Domain of unknown function (DUF4746) 3.2 8.0 5.8 5.3 7.3 5.8 1.2 1 AIF_C Apoptosis-inducing factor, mitochondrion-ass 3.3 7.3 12.3 5.1 6.7 12.3 1.2 1 RR_TM4-6 Ryanodine Receptor TM 4-6 3.3 6.3 5.9 4.7 5.7 5.9 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tr 4 6.9 25.7 5.7 6.4 25.7 1.2 1 DDRGK DDRGK domain Domain annotation for each model (and alignments): >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 19.1 1.5e-08 1.3e-05 128 213 .. 63 147 .. 44 151 .. 0.55 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 1.5e-08 RNA_pol_3_Rpc31 128 rpfak.efFPkELwptlkdgkd.e.keekgkskkkkeadeedeegksaleklkelaeeeddeeekkekedeeeeeeeeeeeddefdddd 213 p++ +++P+ L+++++++ e + +++++++k+ +d +e + +k+k++ ++e++ee e+e+eeeeeeeeeee++e ++++ T027756_1 63 TPSHSrKLLPSNLHQVVRRSPPrEpE-KTEEKERKRVRDGWKEGKTACGRKRKTNLKKEEEEE---EEEEEEEEEEEEEEEEEEEEEEE 147 4555569**********633323333.344444455566777777777888885555555521...11222222211122222222222 PP >> Paf1 Paf1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 18.3 0.00079 0.68 337 394 .. 79 147 .. 52 153 .. 0.59 2 ? -2.9 0.0 2.7 2.3e+03 102 118 .. 287 303 .. 283 328 .. 0.76 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00079 Paf1 337 vklrelneeelkarekresefdpleee............keeeeeeeeeeeeekseeeeekeeekeeaee 394 v+ ++ e e+ + ++r++ d+++e k+eeeeeeeeeeee +eeeee+eee+ee+ee T027756_1 79 VRRSPPREPEKTEEKERKRVRDGWKEGktacgrkrktnlKKEEEEEEEEEEEE-EEEEEEEEEEEEEEEE 147 56666666666666666666667877777788888777644444444444444.1222222222222222 PP == domain 2 score: -2.9 bits; conditional E-value: 2.7 Paf1 102 hskkVswLRrTEYiste 118 +s+ V wL rTE + t T027756_1 287 DSAPVQWLHRTENLKTG 303 57789*******77665 PP >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 8.2 0.0003 0.26 56 94 .. 112 149 .. 98 167 .. 0.47 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0003 FAM176 56 kkkkklkeesekasededeeeeeeeedsseseaeeelse 94 k+k++lk+e+e+++e+e+eee eeee+++e+e eee ++ T027756_1 112 KRKTNLKKEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEN 149 233333333322222222222.22222222222233333 PP >> NOA36 NOA36 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 12.3 0.00029 0.25 242 306 .. 85 148 .. 62 151 .. 0.51 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00029 NOA36 242 sksdddddkegdseydaykkalasatdededdegdedddddddeeddeeeeddeeeeeeedeese 306 + ++ ++ke + d+ +k+ ++a + +++ + +++++++++ee++eeee++eeeeeee+ee+e T027756_1 85 REPEKTEEKERKRVRDG-WKEGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 148 34444444444444444.55555555555544444444444444444444444444444444443 PP >> RXT2_N RXT2-like, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 7.5 0.00055 0.47 54 93 .. 97 152 .. 73 160 .. 0.50 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00055 RXT2_N 54 k................kekekeekeeeeedeegdeededdddeeeaeaaeenpyk 93 + k++ k+e+eeeee+ee++ee+e++++eee+e++een + T027756_1 97 RvrdgwkegktacgrkrKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEENFTR 152 14556666666666544333333333333333333333333333356666666655 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 14.1 0.00069 0.59 364 408 .. 112 149 .. 62 165 .. 0.43 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00069 Nop14 364 eseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeede 408 +++ + ++eee+eeeee+eeeeee ++++e+eeeeee++ T027756_1 112 KRKTNLKKEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEN 149 111111111111111111111111.......11111123333333 PP >> AIM3 Altered inheritance of mitochondria protein 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 3.0 0.0013 1.1 25 72 .. 100 147 .. 94 159 .. 0.63 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.0013 AIM3 25 sGyqagKkhykkskekreerdgkddsdeereededydtstsleslrdp 72 G++ gK+ +++ +++++++++ee+ee+e+++++ + e+ ++ T027756_1 100 DGWKEGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEE 147 588888888877777766666655555555555555544444444444 PP >> PPP4R2 PPP4R2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 14.6 0.00093 0.8 220 286 .. 87 148 .. 3 150 .. 0.50 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00093 PPP4R2 220 ekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeeeee 286 ++++++e + + +e +++ ++k++ k+++ee++ee+++ e++e+e+++eeeeeeeee T027756_1 87 PEKTEEKERKRVRDGWKEGKTACGRKRKTNLKKEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEE 148 22222233344444444555555555555553222222222222.....222222222222222222 PP >> CDC27 DNA polymerase subunit Cdc27 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 13.8 0.00096 0.83 204 268 .. 86 149 .. 58 165 .. 0.46 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00096 CDC27 204 aslkkkasaksnimksffkakpa.ekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeek 268 +++k+++++ +++ + ++ k+a +k kt+ k+++ eee eee+e+e++e+e++++ eeeeee+ T027756_1 86 EPEKTEEKERKRVRDGWKEGKTAcGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEN 149 223333444444444444444432223333333332333323333333333233332..3333333 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 15.8 0.0012 0.99 44 107 .. 88 147 .. 55 154 .. 0.39 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0012 DUF1510 44 ekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedae 107 ek +++e + ++ k+ k+ ++ k + ++eeee+++eeeeee++ee+ee+e+ee++e T027756_1 88 EKTEEKERKRVRDGWKEGKTA----CGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEE 147 222222222222222222222....222222222222222222222222122222222211222 PP >> Pox_Ag35 Pox virus Ag35 surface protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 14.3 0.0014 1.2 55 98 .. 96 147 .. 58 154 .. 0.41 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0014 Pox_Ag35 55 kr..........attprkkpakkekkkkeeekeeaaeeeeledseedeenende 98 kr a +++k+ +k+++++eee+ee++eee e++ee+ee+e++e T027756_1 96 KRvrdgwkegktACGRKRKTNLKKEEEEEEEEEEEEEEE--EEEEEEEEEEEEE 147 224444444332222222222222222222221111111..1222222222222 PP >> Vfa1 AAA-ATPase Vps4-associated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 9.8 0.002 1.7 59 115 .. 89 145 .. 48 156 .. 0.43 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.002 Vfa1 59 eeaakkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkek 115 ++++k++k++ + ++ k+ + +k+k++ +ke++++e++++++++++e+e+++++e+ T027756_1 89 KTEEKERKRVRDGWKEGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEE 145 122222222333333333333333333332222221111111111111111111111 PP >> DUF1840 Domain of unknown function (DUF1840) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 5.7 0.0033 2.8 53 98 .. 117 162 .. 110 166 .. 0.67 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0033 DUF1840 53 iaaekaeeaeeeeeeeeeekeeekeeeeeevsLaqRalPLlelLra 98 +++e++ee+eeeeeeeeee+eee+eeeeee + +R +PL+ +r+ T027756_1 117 LKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEENFTRGIPLVPVMRK 162 5566666666666666666666666666666666899999999987 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 3.9 0.0032 2.8 256 319 .. 68 148 .. 44 163 .. 0.40 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0032 DUF913 256 akllved...............assasskseasssssssetkeeek.......................ssededvemedaeaetesesdeeeeseeeke 317 kll+++ + +e++ + + + e++e+e++ e+e+e++eeee+eee+e T027756_1 68 RKLLPSNlhqvvrrspprepekT---------------EEKERK-RvrdgwkegktacgrkrktnlkkeE---EEEEEEEE--EEEEEEEEEEEEEEEEE 146 55666664332222222222110...............111111.1234455556666666676664321...11111111..11111111112222222 PP DUF913 318 kn 319 ++ T027756_1 147 EE 148 22 PP >> DUF4746 Domain of unknown function (DUF4746) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 19.3 0.0042 3.6 76 140 .. 86 150 .. 68 159 .. 0.46 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0042 DUF4746 76 evsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeeeeeeeeeeeeedkel 140 e ++ ee+ +k ++ k+ +++ + + +++ ++ee+eeeeeee+ eeeeeeeeeeeeeee+++ T027756_1 86 EPEKTEEKERKRVRDGWKEGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEENF 150 33443433333333333444444444444433333333333333333333444444444444444 PP >> AIF_C Apoptosis-inducing factor, mitochondrion-associated, C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.8 0.0061 5.3 57 101 .. 110 154 .. 92 162 .. 0.76 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0061 AIF_C 57 veesseesksekeeeaskekseekseeekkkkekkeeeedygkGv 101 ++ +++ k+e+eee+++e++ee++eee++++e++eeee++ +G+ T027756_1 110 GRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEENFTRGI 154 4455566666666666666777777788899999999******98 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 12.3 0.006 5.1 75 141 .. 80 147 .. 38 155 .. 0.41 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.006 RR_TM4-6 75 eteaeespt.pelkkkla.....eeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeee 141 ++ ++p+ +e+k+++ + e k + +++++ +k+++e++e+ee+e+e+ee+++e+eeeeee T027756_1 80 RRSPPREPEkTEEKERKRvrdgwK-----EGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEE 147 333333222333333333222221.....22222222222222222222222222222222222222222222 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 5.9 0.0055 4.7 52 112 .. 93 145 .. 63 176 .. 0.45 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0055 NPR3 52 kkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 k+ kr r + +++k+ +++k++ +k+e++ee+++++e+ee+ee+e++e e++ T027756_1 93 KERKRVRDGWKEGKTACGRKRKTN-LKKEEEEEEEEEEEEEEEEEEEEEEE-------EEE 145 222222222222211111111111.11111111111111111111111111.......111 PP >> DDRGK DDRGK domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 25.7 0.0066 5.7 9 77 .. 84 152 .. 76 165 .. 0.80 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0066 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS DDRGK 9 kkleeKekkrqqreaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyek 77 ++ eK + ++ + + + +e + kr+ + k++ee+eee+e+++eeee+++eee+e++e+e++ + T027756_1 84 PREPEKTEEKERKRVRDGWKEGKTACGRKRKTNLKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEENFTR 152 577788888888888888888888888899888999999999999999999999999999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1375 (0.0843248); expected 326.1 (0.02) Passed bias filter: 817 (0.0501043); expected 326.1 (0.02) Passed Vit filter: 293 (0.0179688); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 19 [number of targets reported over threshold] # CPU time: 1.81u 0.48s 00:00:02.29 Elapsed: 00:00:01.02 # Mc/sec: 3343.24 // Query: T027756_2 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1116 (0.0684411); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 4671.38 // Query: T027756_3 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 5246.32 // Query: T333527_1 [L=4248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 251 (0.0153931); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.47s 00:00:02.53 Elapsed: 00:00:00.89 # Mc/sec: 13654.84 // Query: T333527_2 [L=4248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 9.9 25.2 0.33 9.0 25.2 1.3 1 Atrophin-1 Atrophin-1 family Domain annotation for each model (and alignments): >> Atrophin-1 Atrophin-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 25.2 2e-05 0.33 579 625 .. 2177 2223 .. 2174 2228 .. 0.92 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 2e-05 Atrophin-1 579 reealekakreaeqkareekerekerekererererereaeraakas 625 ree k ++ e+k +e+ere+erekererererere +++as T333527_2 2177 REERKGKERKGKERKGEREREREREREKERERERERERERRLCTQAS 2223 899999*********************************98888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 554 (0.0339752); expected 326.1 (0.02) Passed bias filter: 283 (0.0173556); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.06u 0.41s 00:00:02.47 Elapsed: 00:00:00.80 # Mc/sec: 15191.01 // Query: T333527_3 [L=4248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 615 (0.0377162); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.42s 00:00:02.39 Elapsed: 00:00:00.75 # Mc/sec: 16203.74 // Query: T058837_1 [L=639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 3046.78 // Query: T058837_2 [L=638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.71 # Mc/sec: 2570.72 // Query: T058837_3 [L=638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-12 47.5 0.0 2.3e-12 46.7 0.0 1.4 1 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain 5.4e-06 26.3 2.0 8e-06 25.7 2.0 1.2 1 FA_desaturase Fatty acid desaturase Domain annotation for each model (and alignments): >> Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.7 0.0 2.8e-16 2.3e-12 17 74 .] 171 228 .. 155 228 .. 0.88 Alignments for each domain: == domain 1 score: 46.7 bits; conditional E-value: 2.8e-16 EETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGCHHHH.HHHHHGGEEEEEC CS Cyt-b5 17 airgkVYDvskflsehpGgesvilkyaGkDateafksvvhsekda.ekllkkylvGkla 74 +i+ kVY+vs+++++hpGg++v+++ aG+Da + f ++ h e d+ + +lk +l+G+la T058837_3 171 VINCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAM-HPELDIvQLYLKPLLIGELA 228 69************************************.7777662666888****985 PP >> FA_desaturase Fatty acid desaturase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 2.0 9.8e-10 8e-06 22 85 .. 303 363 .. 299 409 .. 0.85 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 9.8e-10 FA_desaturase 22 slaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlapla 85 +l+H+a+H ++f+k k n+ + +++ + + g s + w + H+ H ++n +++Dpd+ + + T058837_3 303 FLQHDAGHLSIFRKSKWNHVVHKFV---MCHLKGLSADRWNYWHFEQHVKPNIYPKDPDIDTDP 363 79**********9999999999999...9999***************************98654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 3202.12 // Query: T135745_1 [L=861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 3972.86 // Query: T135745_2 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3618.11 // Query: T135745_3 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 3785.10 // Query: T090337_1 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-45 152.9 26.6 5e-38 129.0 13.6 2.6 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 5.1 1.6e-14 2.6e-10 15 56 .. 383 424 .. 380 424 .. 0.95 2 ! 129.0 13.6 3e-42 5e-38 1 89 [] 411 498 .. 411 498 .. 0.98 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 1.6e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090337_1 383 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 424 567*************************************97 PP == domain 2 score: 129.0 bits; conditional E-value: 3e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090337_1 411 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 498 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.42s 00:00:01.57 Elapsed: 00:00:00.73 # Mc/sec: 9127.22 // Query: T090337_2 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 9798.34 // Query: T090337_3 [L=2328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.69 # Mc/sec: 9652.19 // Query: T233607_1 [L=2876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:00.81 # Mc/sec: 10157.71 // Query: T233607_2 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.76 # Mc/sec: 10822.22 // Query: T233607_3 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 10822.22 // Query: T246727_1 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 2030.79 // Query: T246727_2 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 2184.63 // Query: T246727_3 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 2443.83 // Query: T324408_1 [L=798] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (798 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 3215.41 // Query: T324408_2 [L=797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 13.5 1.1 0.11 11.4 0.2 2.1 2 DEC-1_N DEC-1 protein, N-terminal region Domain annotation for each model (and alignments): >> DEC-1_N DEC-1 protein, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.018 3e+02 308 334 .. 425 451 .. 416 454 .. 0.79 2 ? 11.4 0.2 6.5e-06 0.11 99 159 .. 607 671 .. 592 681 .. 0.82 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.018 DEC-1_N 308 asaaaqsadpyklnyplsrtpvhkitr 334 + a+aq++ l++p sr p+h+ ++ T324408_2 425 SGASAQESRDPPLQWPDSRVPLHREAQ 451 457999999889***********8665 PP == domain 2 score: 11.4 bits; conditional E-value: 6.5e-06 DEC-1_N 99 alqsllplqsldgllGaaapapalaaapppapapvp..ddpapapaapqaaaf..affnpanlda 159 +l s+l+++ +l G aapap + a p p ++ p p+ap+++ + + +pa+l+ T324408_2 607 FLGSFLSFPKQCSLGGWAAPAPRVRARTPSRPGKTArgARAGPRPQAPTSTRLspTDADPAQLGG 671 788999***********************999999854555899999988865336677777764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3677.55 // Query: T324408_3 [L=797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 3166.78 // Query: T214657_1 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00019 20.9 0.7 0.00025 20.5 0.7 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 0.00031 20.9 7.7 0.00041 20.5 7.7 1.1 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 0.029 14.3 0.4 0.036 14.1 0.4 1.2 1 DDHD DDHD domain 0.23 10.0 7.6 0.3 9.7 7.6 1.1 1 Presenilin Presenilin 0.24 10.6 13.3 0.35 10.1 13.3 1.2 1 DUF4820 Domain of unknown function (DUF4820) 0.61 9.2 26.7 0.86 8.7 26.7 1.1 1 BUD22 BUD22 1 7.9 19.4 1.5 7.4 19.4 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tr 1.2 8.7 17.1 2.2 7.8 17.1 1.3 1 FAM176 FAM176 family 1.6 8.3 12.5 2.8 7.6 12.5 1.3 1 Myc_N Myc amino-terminal region 1.7 7.4 10.5 2.3 6.9 10.5 1.1 1 DUF913 Domain of Unknown Function (DUF913) 1.7 8.1 27.0 2.4 7.5 27.0 1.1 1 SR-25 Nuclear RNA-splicing-associated protein 2.6 8.7 18.0 4.4 7.9 18.0 1.3 1 FYDLN_acid Protein of unknown function (FYDLN_acid) 9.9 6.1 16.1 19 5.2 16.1 1.4 1 Eapp_C E2F-associated phosphoprotein Domain annotation for each model (and alignments): >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.7 2e-07 0.00025 21 64 .. 186 230 .. 164 388 .. 0.54 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 2e-07 SpoIIP 21 eapaeesekeeke.keeeeeeekeeeeeeeikkeekeeekekeed 64 ++++++++k++++ k++++++e+eeeeeee+++ee+eee+e+ee+ T214657_1 186 KKKKKKKKKKKRKrKRKKKKKEEEEEEEEEEEEEEEEEEEEEEEE 230 111111111111101111111111111111111111111111111 PP >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 7.7 3.3e-07 0.00041 71 123 .. 166 233 .. 77 239 .. 0.51 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 3.3e-07 DUF1777 71 r...............kesekrsesksskeskersrekekkeskkeeeeededeeeeeveeddedeee 123 + k+++k++++k++k++++r+r+k+kke+++eeeee+e+eeeee+ee++e+e++ T214657_1 166 Kpacpvhvsqnlkyn*KKKKKKKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEAA 233 05555555555555664444444444444444444444444444444444444444433433323333 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.4 2.8e-05 0.036 129 186 .. 187 227 .. 44 301 .. 0.66 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 2.8e-05 DDHD 129 eesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkeleeea 186 ++++k+++++ + +r++++++e++e++++e++++++++ ee+ T214657_1 187 KKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEE-----------------EEE 227 11111111111111111111111111111111111111.................111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 7.6 0.00024 0.3 275 319 .. 184 229 .. 80 245 .. 0.48 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00024 Presenilin 275 eeeeeesaeaeseaeesseekeeeess.esseeeeeeeeeeeeses 319 +++++++++++++ ++++++k++ee++ e++eeeeeeeeeeee+e+ T214657_1 184 KKKKKKKKKKKKKRKRKRKKKKKEEEEeEEEEEEEEEEEEEEEEEE 229 1111111111111111111111111110111111111111111111 PP >> DUF4820 Domain of unknown function (DUF4820) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 13.3 0.00028 0.35 144 211 .. 160 228 .. 153 238 .. 0.50 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00028 DUF4820 144 stliCsrpgrsipvsseldns.artlterksekesaesseskkrnkeerdaeseeessedeeeeetvke 211 + +C +p ++vs++l+ + + +++k++k+++++++++k++k+e+++e+eee++e+eeeee +e T214657_1 160 RVYLCNKPACPVHVSQNLKYN*KKKKKKKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEE 228 567899999888888777764534444444444444444444444433333333333333322222222 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 26.7 0.00069 0.86 142 197 .. 184 231 .. 171 243 .. 0.35 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00069 BUD22 142 kkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeede 197 kkk+++kkkkkkk+k+k kk+++e ee+e++e+ e+ee+e++eeeeee+e T214657_1 184 KKKKKKKKKKKKKRKRKRKKKKKE-------EEEEEEEE-EEEEEEEEEEEEEEEE 231 222222222222222222222222.......22222222.0111111111111111 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 19.4 0.0012 1.5 34 94 .. 169 230 .. 168 238 .. 0.36 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0012 NPR3 34 lPvhvdedgkwr.kskkkkkkskrkrssrskekkskesskksesssksesseekksskesee 94 +Pvhv+++ k++ k+kkkkkk+k+k+++r++++k+k++++++e+++++e++ee+++++e+ee T214657_1 169 CPVHVSQNLKYN*KKKKKKKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEEEE 230 69999999988554433332222222222222222222222222222222222222211111 PP >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 17.1 0.0018 2.2 54 90 .. 192 228 .. 182 246 .. 0.36 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0018 FAM176 54 lskkkkklkeesekasededeeeeeeeedsseseaee 90 ++kkk+k+k++++k++e+e+eeeeeeee+++e+e ee T214657_1 192 KKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEE 228 2222222222222222222222222222222221111 PP >> Myc_N Myc amino-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 12.5 0.0022 2.8 197 235 .. 190 228 .. 157 234 .. 0.46 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0022 Myc_N 197 sspasaassssssdskalssseedtlsesdeeeeeeede 235 +++++++++++++++k+++ +ee++++e++eeeeeee+e T214657_1 190 KKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEE 228 222222222222222222222222222222222222333 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 10.5 0.0018 2.3 249 313 .. 162 231 .. 153 247 .. 0.43 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0018 DUF913 249 elgkekaakllved.......assasskseasssssssetkeeek.ssededvemedaeaetesesdeeeese 313 +l++++a + v++ + ++++k++++++++++++++++k ++e+e++e+e++ e+e+e++eeee+e T214657_1 162 YLCNKPACPVHVSQnlkyn*kK-KKKKKKKKKKKKKRKRKRKKKKkEEEEEEEEEEEE--EEEEEEEEEEEEE 231 6788888333333356778852.33333333333333333333321222222222222..1111111111111 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 27.0 0.0019 2.4 89 126 .. 182 218 .. 166 235 .. 0.44 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0019 SR-25 89 rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaaa 126 +kk++k k+kkkkkkk+k+k+kk+kk ++e++++e+++ T214657_1 182 KKKKKK-KKKKKKKKKRKRKRKKKKKEEEEEEEEEEEE 218 222222.2222222222222222222222222222222 PP >> FYDLN_acid Protein of unknown function (FYDLN_acid) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 18.0 0.0035 4.4 46 89 .. 186 229 .. 164 238 .. 0.34 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0035 FYDLN_acid 46 aaaaeaeeekkkkeaeedeedeeeeedvsdedadeeeeeddddd 89 +++++++++kk+k++++++++eeeee++++e+++eeeee+++++ T214657_1 186 KKKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEEEEEEE 229 22222222212221111111111111111111111111111111 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 16.1 0.015 19 75 112 .. 187 224 .. 167 239 .. 0.35 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.015 Eapp_C 75 kykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeee 112 k+k+++++kk+k+k+kkkkkee+eee+e+ee+eeeeee T214657_1 187 KKKKKKKKKKRKRKRKKKKKEEEEEEEEEEEEEEEEEE 224 11111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2409 (0.147737); expected 326.1 (0.02) Passed bias filter: 816 (0.0500429); expected 326.1 (0.02) Passed Vit filter: 351 (0.0215258); expected 16.3 (0.001) Passed Fwd filter: 68 (0.00417024); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.90 # Mc/sec: 1716.50 // Query: T214657_2 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-09 36.4 0.8 5e-09 35.4 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.32 10.9 5.6 0.54 10.2 5.6 1.3 1 Eapp_C E2F-associated phosphoprotein 0.58 10.1 13.3 1.2 9.1 13.3 1.5 1 Peptidase_S49_N Peptidase family S49 N-terminal 0.65 10.5 11.3 1.1 9.7 11.3 1.3 1 PEHE PEHE domain 2.1 8.0 7.9 3 7.5 7.9 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.4 0.8 1.5e-12 5e-09 1 19 [] 78 96 .. 78 96 .. 0.98 Alignments for each domain: == domain 1 score: 35.4 bits; conditional E-value: 1.5e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T214657_2 78 SFAGTWMKLETIILSKLTQ 96 7*****************9 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 5.6 0.00016 0.54 80 110 .. 207 237 .. 185 263 .. 0.44 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00016 Eapp_C 80 esekkkkkkkkkkkkeekeeeaeaeeaeeee 110 +++kkkkkkkkkkkk++k+++++++++++++ T214657_2 207 KKKKKKKKKKKKKKKKKKKKKKRKKQQQQQQ 237 1111111111111112222222222222222 PP >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 13.3 0.00037 1.2 67 95 .. 207 235 .. 183 261 .. 0.55 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00037 Peptidase_S49_N 67 lkalekeekkeekeekkaekkkakeeeek 95 +k+++k++kk++k++kk++kkk+k+++++ T214657_2 207 KKKKKKKKKKKKKKKKKKKKKKRKKQQQQ 235 22222222222222222222222222222 PP >> PEHE PEHE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 11.3 0.00035 1.1 43 113 .. 184 251 .. 179 269 .. 0.49 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00035 PEHE 43 kerkRwdlqrnreqqrreslrqRkeskkgrntpqpgsenpltkqppspddsesiqvldevpvvasplppls 113 ++r R+ +r r + r++ +R+++kk +++++++++++ k++++ ++ +++q l+ p++ p+pp++ T214657_2 184 RRRRRRRRRRRRRGRGRGR--RRRRKKKKKKKKKKKKKKKKKKKKKKRKKQQQQQQLSSWPCS-PPFPPVT 251 3344444444444444444..443344434444444444444444444555555667777763.3444444 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 7.9 0.00092 3 123 158 .. 205 236 .. 180 261 .. 0.44 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00092 RR_TM4-6 123 ekekekeeakkeseeeeeekkkkkkakskkkeeaea 158 +++ ++kk++++++++kkkkkk+k++kk+++++ T214657_2 205 RRK----KKKKKKKKKKKKKKKKKKKKKRKKQQQQQ 236 111....11111111111111112222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2830 (0.173556); expected 326.1 (0.02) Passed bias filter: 1039 (0.0637189); expected 326.1 (0.02) Passed Vit filter: 332 (0.0203606); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.33u 0.53s 00:00:01.86 Elapsed: 00:00:00.86 # Mc/sec: 1796.34 // Query: T214657_3 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.07 13.3 13.7 0.12 12.5 13.7 1.3 1 DUF755 Domain of unknown function (DUF755) 0.21 9.8 15.8 0.29 9.4 15.8 1.0 1 Rrn6 RNA polymerase I-specific transcription-initiat 3.3 5.8 18.6 4.6 5.3 18.6 1.0 1 CDC45 CDC45-like protein 3.4 7.3 18.2 5.5 6.7 18.2 1.2 1 DUF3381 Domain of unknown function (DUF3381) 7.3 4.9 17.0 9.9 4.5 17.0 1.0 1 TFIIF_alpha Transcription initiation factor IIF, alpha subu Domain annotation for each model (and alignments): >> DUF755 Domain of unknown function (DUF755) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 13.7 3.6e-05 0.12 68 112 .. 194 238 .. 182 240 .. 0.35 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 3.6e-05 DUF755 68 krkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSsss 112 +++e++++ +++ ++++++r+ ++r+++++++++r +sssSSsss T214657_3 194 EEEEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRGRSSSSSSSS 238 222222222233333333333223333333333333333333333 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 15.8 8.8e-05 0.29 736 789 .. 190 239 .. 181 258 .. 0.34 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 8.8e-05 Rrn6 736 eydwqrtessleaeeq...rqrarrkeekrrrrkeklklrsraeassssessqssqs 789 e ++++ e+++e+ + r+r rr++++rrrr+++ +r+++ +s+ss+ss+ T214657_3 190 EEEEEEEEEEEEE--EeegRRR-RRRRRRRRRRRRR----RRRRRRGRSSSSSSSSL 239 1111222222222..1334222.2222222222222....12333333333333333 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 18.6 0.0014 4.6 139 193 .. 183 230 .. 175 255 .. 0.34 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0014 CDC45 139 eeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse 193 eee+++eeeeeeeee+eeeeee+ +++r+++++++ +++++r+r+rrr + T214657_3 183 EEEEEEEEEEEEEEEEEEEEEEE----GRRRRRRRRRR---RRRRRRRRRRRRGR 230 11111111111111111111111....11111111111...11111111111111 PP >> DUF3381 Domain of unknown function (DUF3381) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 18.2 0.0017 5.5 112 154 .. 183 225 .. 165 231 .. 0.43 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0017 DUF3381 112 eeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkk 154 eeeee+eeee++eeee e+e ee + + +++++r ++++++++ T214657_3 183 EEEEEEEEEEEEEEEEEEEEEEEGRRRRRRRRRRRRRRRRRRR 225 1122222222222222222333333332222222222222222 PP >> TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 17.0 0.003 9.9 305 360 .. 182 237 .. 180 241 .. 0.35 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.003 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX..XXXXXXXX CS TFIIF_alpha 305 eEeeekkeieqdedeeekeeekkeeegklskkkkkakk..lkkkkkekdkkdSddeed 360 eEeee +e e+ e+eee+eee++eeeg +++++ ++ + + ++ +++S+++++ T214657_3 182 EEEEEEEE-EE-EEEEEEEEEEEEEEGRRRRRRRRRRRrrRRRRRRRRRGRSSSSSSS 237 33333333.33.3333333333344444433333333200333333344445544443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1443 (0.088495); expected 326.1 (0.02) Passed bias filter: 659 (0.0404146); expected 326.1 (0.02) Passed Vit filter: 237 (0.0145345); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.07u 0.42s 00:00:01.49 Elapsed: 00:00:00.82 # Mc/sec: 1883.96 // Query: T330240_1 [L=2594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-18 66.1 0.0 3.6e-18 65.1 0.0 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.1 0.0 2.2e-22 3.6e-18 12 79 .. 2022 2089 .. 2012 2090 .. 0.85 Alignments for each domain: == domain 1 score: 65.1 bits; conditional E-value: 2.2e-22 Transposase_1 12 ldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr.qklqekrpalvn 79 + + k +pk++l kkvm+tV+Wsa+gli+y+fl+pget t e+Y qq+d+++ + lq+++pal+n T330240_1 2022 VRPRSRSKALPKAKLAPKKVMVTVCWSAAGLIHYSFLNPGETSTLEKYVQQIDEMH*K-LQCLQPALIN 2089 566778999**********************************************743.4555566655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.71 # Mc/sec: 10452.10 // Query: T330240_2 [L=2594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0033 17.1 1.9 0.0033 17.1 1.9 2.0 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.1 0.35 5.7e+03 52 69 .. 966 983 .. 963 987 .. 0.76 2 ! 17.1 1.9 2e-07 0.0033 6 30 .. 2016 2040 .. 2014 2043 .. 0.93 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.35 Transposase_1 52 etitsevYaqqldklrqk 69 + + vY +ql ++++ T330240_2 966 NNNNNFVYETQLCTMNHQ 983 5668899*******9654 PP == domain 2 score: 17.1 bits; conditional E-value: 2e-07 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkk 30 ++ aqWld++++pk++pkp+ hqk+ T330240_2 2016 RQPAQWLDQEAAPKHFPKPNSHQKR 2040 6899*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 13742.58 // Query: T330240_3 [L=2593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 514 (0.0315221); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.53 # Mc/sec: 13996.48 // Query: T274837_1 [L=4392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-26 94.0 0.0 1.5e-26 93.4 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid prote 1.4e-19 69.9 0.0 3.7e-18 65.3 0.0 2.2 2 dUTPase dUTPase 3e-06 26.2 3.8 4.2e-06 25.7 3.8 1.1 1 Transposase_22 L1 transposable element 8.5e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.4 0.0 3.6e-30 1.5e-26 112 199 .. 1156 1243 .. 1146 1244 .. 0.94 Alignments for each domain: == domain 1 score: 93.4 bits; conditional E-value: 3.6e-30 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraCqgvggav 199 +ki + g++ +s + ++QGpkEpy df+a l+++l+k++ad +a++++++ La++NANpeCq+ l+p+ +++ l d+++aC+g gg T274837_1 1156 KKITSGGEQYPSSSAVKQGPKEPYADFIAQLQESLKKVIADSAAQHIVLRLLAFDNANPECQATLRPITAKAHLVDYIKACDGFGGNL 1243 7999999*****************************************************************************9975 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.3 0.0 9.1e-22 3.7e-18 5 127 .. 1358 1472 .. 1354 1477 .. 0.87 2 ? 2.1 0.0 0.032 1.3e+02 54 110 .. 3979 4035 .. 3978 4049 .. 0.89 Alignments for each domain: == domain 1 score: 65.3 bits; conditional E-value: 9.1e-22 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLif 101 + + + +sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l RS+l++kg+ v +gvidsdy+Ge+++v+ +t+ + k g+Ri qL++ T274837_1 1358 CLSPTTTGSAAVDLCCTKAVSLLPgEPPQKVPTGVCGPLPAGTVGLLLSRSSLNLKGVQVQTGVIDSDYNGEIQIVI--STSVPWKAGPGERISQLLI 1453 6788999*****************7789*******************************************888887..68899************** PP EEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 102 ariltaeleevetlkatergeggfgs 127 +++++ + k++ +++ggfgs T274837_1 1454 VPYVE--M-----GKSETKQTGGFGS 1472 *9998..1.....1334445555555 PP == domain 2 score: 2.1 bits; conditional E-value: 0.032 HHHHHHHEEEEEEEEETTB.TSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEE CS dUTPase 54 Sglaakglivvpgvidsdy.rGevkvvlfnltkkdvkikkgdRiAqLifariltaele 110 S a+kg++v+ gvi dy + +++ l n +k++ k+gd + +L++ ++ ++++ T274837_1 3979 SQQAKKGVTVLAGVIYPDY*EE-ISLLLHNGGKEEYAWKTGDPLGRLLVLPCSVIKVN 4035 56799*************9998.9***************************9885554 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 3.8 1e-09 4.2e-06 164 250 .. 595 680 .. 594 683 .. 0.88 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 1e-09 HHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT--HHHHHHHH.HHHHHH.H-HHHHHHT---EEEEEEESSSS-TSSSS--E CS Transposase_22 164 revkerekrkkileqsl.qviqdtvkrPnlrliGvdesedeqlkklenil.nkiiee.nfPnlkkeanviiqeiyrtPnrqdskrassrh 250 ++ k++ekr+k++eq+l v ++vkr n ++ G++ ++e+ ++le+i+ + i nfP l+++ n +iqei+ tP + s r+s+r T274837_1 595 KTDKNKEKRMKRNEQNL*EV-CNYVKRSNQQVTGIPARDKEKVNNLEDIF*D--IIH*NFPSLARDGNNQIQEIQTTPTTFYS-RSSPRQ 680 6789************9997.58****************9999888888777..45999*******************99876.566765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 3.2e-08 0.00013 2 84 .. 1703 1757 .. 1701 1760 .. 0.92 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 3.2e-08 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvp 84 +Kk+ g++R++ +d++a+n++i++ + qpg++++ + +k++ l+ +Dlk++F+++p T274837_1 1703 KKKS-GKWRML----TDLRAINSVIQS---------MGALQPGLPSPAMI--------------PKNWPLIVMDLKDCFFTIP 1757 5666.*****7....7***********.........***********777..............9****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.59 # Mc/sec: 21296.21 // Query: T274837_2 [L=4392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-06 27.1 19.1 5.2e-06 25.9 8.7 3.2 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00073 19.4 6.8 0.0045 16.9 6.2 2.9 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.046 13.8 0.0 0.075 13.1 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.4 2.7 0.0026 14 2 19 .. 1266 1283 .. 1265 1288 .. 0.93 2 ! 25.9 8.7 9.5e-10 5.2e-06 3 35 .. 1302 1334 .. 1300 1335 .. 0.90 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0026 --B-TTT-SSBS-TTT-- CS zf-CCHC_5 2 pglCpRCkkgkHwardCh 19 pg C C+k H +++C+ T274837_2 1266 PGACFNCGKHGHTKKECR 1283 899**************8 PP == domain 2 score: 25.9 bits; conditional E-value: 9.5e-10 -B-TTT-SSBS.-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 3 glCpRCkkgkH.wardChskfdknGnpLsanegr 35 + Cp+C kgkH ++Ch kfdk+Gnp s+n r T274837_2 1302 EICPKCRKGKH*A-NQCHCKFDKDGNPISGNAMR 1334 68********998.8***************9866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 6.2 8.3e-07 0.0045 2 18 .] 1268 1284 .. 1267 1284 .. 0.93 2 ? -2.9 0.0 1.5 7.9e+03 9 15 .. 3337 3343 .. 3336 3343 .. 0.91 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 8.3e-07 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T274837_2 1268 ACFNCGKHGHTKKECRK 1284 7**************86 PP == domain 2 score: -2.9 bits; conditional E-value: 1.5 SSSTTTT CS zf-CCHC 9 pGHiard 15 pGH+++d T274837_2 3337 PGHLSSD 3343 8****98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 1.4e-05 0.075 8 87 .. 3545 3626 .. 3544 3649 .. 0.78 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 1.4e-05 EEEEE.ECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT...SCSEEEEEES-HHHHHHHHCCCHHHHHT CS RNase_H 8 tDGsc.lgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkal..ksdekvniytDSkYvvkgitqwvhrwkkn 87 tDGs+ + ++++ a++ + +r+ ++ +e + + +EL+A++ +++++ +++++v++yt S+ v +g+ w +w+k+ T274837_2 3545 TDGSS*Y-AGITRKWTALALQTLSRTSLKHRPEGKYSQCTELQAMHLVVQSA*kEEWPDVQLYTNSRAVANGLAGWSGTWEKH 3626 6666332.244567777554444677777777899***************8776999***********************653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.57 # Mc/sec: 21663.39 // Query: T274837_3 [L=4391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-24 87.0 0.3 3.4e-13 49.5 0.1 2.3 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 1.7e-24 85.2 0.6 4.2e-24 83.9 0.6 1.7 1 RVT_thumb Reverse transcriptase thumb domain 2e-20 72.8 0.0 4.5e-20 71.7 0.0 1.5 1 RVP Retroviral aspartyl protease 2.2e-18 66.5 0.0 4.1e-18 65.6 0.0 1.5 1 rve Integrase core domain 4.9e-14 51.8 0.2 1.1e-13 50.7 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 2.4e-12 47.0 0.2 4.8e-12 46.0 0.2 1.5 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 2.8e-12 46.8 0.5 5.2e-12 45.9 0.5 1.4 1 GP41 Retroviral envelope protein 8.5e-11 42.1 0.1 8.5e-11 42.1 0.1 1.6 1 RNase_H RNase H 1e-08 34.8 2.2 2.1e-08 33.8 2.2 1.5 1 G-patch G-patch domain 0.00086 19.1 1.5 0.0028 17.4 1.5 2.0 1 Integrase_Zn Integrase Zinc binding domain 0.0028 16.8 3.1 0.0062 15.7 3.1 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.5 0.1 2.3e-16 3.4e-13 84 219 .. 1756 1867 .. 1744 1870 .. 0.88 2 ! 35.4 0.0 4.6e-12 6.8e-09 107 221 .. 3181 3287 .. 3168 3287 .. 0.87 Alignments for each domain: == domain 1 score: 49.5 bits; conditional E-value: 2.3e-16 BB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH.. CS RVT_1 84 pleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee.. 179 pl+e++++ +af++p vn+ +s +++ +k lpqG+ +SP++++ ++ +++++ +k++++++++rY+D il+++ ++e T274837_3 1756 PLAEQDYERFAFTIP------------------AVNNLQSDKHFHWKMLPQGMLNSPTICQTYVGQAIEPTHKKFSNCYIIRYIDNILCAAPTREIll 1835 677888888888888..................4566699****************************************************988755 PP .HHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 180 .lqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + ++++++ ++ ++l i+ +K++ + +++ yLG T274837_3 1836 *C---YDHLQNSISHANLIIALDKIQTT------TPYSYLG 1867 54...5677899999*************......8999999 PP == domain 2 score: 35.4 bits; conditional E-value: 4.6e-12 .................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 107 sflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204 s+ + ++ + ++++ + +y+ + lp G v+S +l+ ++++ l +++ +++tl++ + Di+++ s++e+ + l+ ++++l g +in +K++ T274837_3 3181 SCPKPHQKKFAFSWQ--GSQYTFTILPKGYVNSTALCHNLIQRYLDHFSL-PQDITLVHHIGDIMLIGASEQEVANTLDLLVRYLHARGWEINLTKIQ 3275 333334456667776..899****************************98.69********************************************* PP EE.....ESSEEETTEE CS RVT_1 205 lvlfsgkseevkyLGvt 221 s++vk+LGv+ T274837_3 3276 EP-----STSVKFLGVQ 3287 **.....9*******95 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.9 0.6 2.8e-27 4.2e-24 1 66 [] 1877 1941 .. 1877 1941 .. 0.96 Alignments for each domain: == domain 1 score: 83.9 bits; conditional E-value: 2.8e-27 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 pqk++++rd+lktLNDfQkLlgdINWi+ lgi+t+ +++LF+iL Gd++ltsp qL +eA+++L+ T274837_3 1877 PQKVTIHRDQLKTLNDFQKLLGDINWIQSALGIPTYAISNLFSILIGDPSLTSPQQL-KEAQAELQ 1941 6********************************************************.67888886 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.0 3e-23 4.5e-20 12 99 .. 1497 1583 .. 1495 1584 .. 0.97 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 3e-23 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +gk+i+al+DtGAd+++is +++P wp+ + ++ G+g+a e++qs++i+++ + + + g+++p+i++ +p+nl+GrdlLq++g++ T274837_3 1497 SGKKIKALVDTGADISIISLQHWPSMWPIPPVRFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITS-VPINLWGRDLLQQWGAQ 1583 6899******************************************************************.**************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.6 0.0 2.8e-21 4.1e-18 5 117 .. 2271 2377 .. 2268 2377 .. 0.90 Alignments for each domain: == domain 1 score: 65.6 bits; conditional E-value: 2.8e-21 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 ++lwq+D+t+++++++ ay+++ id+fs +++a a ++ +a + +ll+ + g p+ v +Dn+s yts+a+++f + +i++ + p+++ T274837_3 2271 NSLWQMDITYVPSFGKL--AYVHICIDTFSQFVWAPAKWES-SAYVKWHLLK-CFTVMGI--PDSVKTDNASGYTSQALATFFSVRNIKHITGIPYNS 2362 89**********66555..****************999999.6666666666.7888888..************************************ PP rve 103 qdnGkvErfnrtlkd 117 q +++vEr+n lk+ T274837_3 2363 QGQAIVERMNLSLKQ 2377 **********99986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.7 0.2 7.5e-17 1.1e-13 2 84 .] 832 914 .. 831 914 .. 0.90 Alignments for each domain: == domain 1 score: 50.7 bits; conditional E-value: 7.5e-17 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee.GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevLd 84 ++ +l++l +Ll++ G+kv + + l+++++ ve++cPWF + Gt+++e+W+ vg+ lk +a + g e ip++v+s+w+lir++L+ T274837_3 832 HKAYLSLLWKLLRKGGVKVIT-S*LTQLFSAVEKYCPWF-LD*GTMNVEVWENVGSTLK-KAYKDGaEDIPITVWSVWALIRSALE 914 678****************75.78899************.6999***************.5555666***************9985 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.0 0.2 3.2e-15 4.8e-12 8 113 .. 1047 1156 .. 1046 1163 .. 0.87 Alignments for each domain: == domain 1 score: 46.0 bits; conditional E-value: 3.2e-15 Gag_p24 8 kkaveqygpsspeviqlidala..eqalpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevl 100 k+a++qygp+sp+v+ l++++a +q++p d+ l+ a+ + ++l+ +++w ee + ++v+ a+++i+i++d+llg + q+ ++ +++ T274837_3 1047 KQAINQYGPGSPFVMRLLKNVAvfSQMTPTDWGALT*AClTPAQFLQfKTWWAEEGSTQAAHNVQ-AQPQINITADQLLGVSGWAGLDAQVVMQDDAI 1143 899****************98855799********99885889999999******9999555554.446************99888777777777*** PP Gag_p24 101 eqvrrlillalek 113 eq+r+++++a+ek T274837_3 1144 EQLRAVCIRAWEK 1156 ***********98 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 0.5 3.5e-15 5.2e-12 27 168 .. 2825 2962 .. 2818 2964 .. 0.87 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 3.5e-15 HHHHHHHHHHHHHHHHSSC.HH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHH CS GP41 27 letQeeidkklearvnale.evvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqek 122 + Q +id kl +++n l v+ lG+ v sl+ +++l+C n C+T+ yn++e +We +k hl+g ++sld++kl++++ ++++++ T274837_3 2825 WNSQTNIDLKLANQINDLR*I-VMWLGDRVSSLEYRIQLQCDWNTSDFCITPHLYNETEhEWEIIKRHLKGH--TGNLSLDIAKLKEQVFQASQAHLT 2919 57899999***9999998555.59**********************************************94..4589******************** PP HHHHHTCHHHHH.HHHHHGCHHHHHHHHH.HHHHHHHHHCHHHHHHH CS GP41 123 tlqeldkldklaqslannfkslnWvsyik.ltvliiavgvalrvvli 168 ++ + ++ a +++ ++nW++ k l+ +i ++++l++ ++ T274837_3 2920 LMPGTEVFEGAA----DGLAAINWLKRTKtLGGSVISMMIVLLIGVV 2962 ***877777777....8999999998765377889999999988654 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.1 0.1 5.7e-14 8.5e-11 4 141 .. 2088 2212 .. 2085 2214 .. 0.73 Alignments for each domain: == domain 1 score: 42.1 bits; conditional E-value: 5.7e-14 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +v+tD s++ g+a + +k + +++++ +++++aEL Avie+L a + +v +++DS+Yvv+ tq v++++ + + t+eq ++ T274837_3 2088 ENVFTDESSN-----GKASYSGSKS--KVFQTSY---TSAQKAELVAVIEVLTA--FEMSVDVISDSSYVVH-STQLVENAQLRFY--TDEQ--LMTl 2168 5678888866.....7777744433..4555555...6****************..999*************.8999999866555..5555..4441 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++l+ +++++ ++++h+++H + + +maD l+ a T274837_3 2169 lTQLQTAVRST--MYPIYITHIRAHISLpgplTAATQMADCLVATA 2212 23555555333..458*********988676755788999887765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 2.2 1.4e-11 2.1e-08 7 44 .. 1597 1634 .. 1592 1635 .. 0.95 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 1.4e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+GLGk+ qG + P++a+ + G+G+ T274837_3 1597 HMMHEMGYVPGMGLGKNLQGLKKPLQAEGQNPHQGVGY 1634 6***********************************98 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 1.5 1.9e-06 0.0028 1 24 [. 2216 2239 .. 2216 2252 .. 0.92 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 1.9e-06 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitre 24 Ak +H+l+H+N+ +L+++++it + T274837_3 2216 AKHFHNLTHVNTSGLKHRYSITQK 2239 89*******************964 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 3.1 4.2e-06 0.0062 5 49 .. 2434 2476 .. 2431 2477 .. 0.87 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 4.2e-06 EEE-SSTTS--EEEEEEEEEETTEEEE..E-SS.-EEEEEGGGEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikgrGavcvFPqdas.dikwvPeRlvrk 49 v w+d +++W +i+grG++cv + +++ +++w+P R +++ T274837_3 2434 VWWRDPITKSWE--IGKIIWGRGYACV-SPGQN*QPIWIPSRHLKP 2476 779999999998..5579*********.8888899*******9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.59 # Mc/sec: 21291.36 // Query: T064373_1 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-22 79.2 0.5 3.6e-22 78.6 0.5 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.6 0.5 2.2e-26 3.6e-22 259 348 .. 2117 2205 .. 2108 2205 .. 0.93 Alignments for each domain: == domain 1 score: 78.6 bits; conditional E-value: 2.2e-26 HHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHH CS Transposase_22 259 lnkdkilkavrek.GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalk 348 ++++i ka+rek + +kG irl+ad+s+etl+arr+w d + kek++q r+ly ak s+ ++ eik f dk+kl+++ ++rPal+ T064373_1 2117 SQRHRISKAAREK*L-IVYKGSSIRLSADFSSETLEARRQWDDKVLKEKEKNCQSRILYLAKPSFKSEEEIKTFPDKQKLKEF-TIRPALQ 2205 56789999***9887.56*************************99999**********************************9.89***97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 10848.45 // Query: T064373_2 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 9622.06 // Query: T064373_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.81 # Mc/sec: 8434.15 // Query: T087740_1 [L=282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.74 # Mc/sec: 1090.21 // Query: T087740_2 [L=281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 1218.02 // Query: T087740_3 [L=281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 1339.82 // Query: T230000_1 [L=1495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-12 46.7 0.0 7.9e-12 45.2 0.0 1.7 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 1.7 8.7 15.3 4.1 7.4 1.7 2.1 2 ATG16 Autophagy protein 16 (ATG16) 3.8 7.5 15.6 3.1 7.8 1.4 2.2 2 ADIP Afadin- and alpha -actinin-Binding 9.1 6.0 9.1 21 4.8 9.1 1.5 1 ExsD Antiactivator protein ExsD Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.2 0.0 1.9e-15 7.9e-12 16 53 .. 636 673 .. 632 678 .. 0.94 Alignments for each domain: == domain 1 score: 45.2 bits; conditional E-value: 1.9e-15 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagal 53 cd+qlr vq++++slmee+arad+e+rlfgg++a a+ T230000_1 636 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAI 673 69********************************9886 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 1.7 0.001 4.1 126 178 .. 344 396 .. 325 400 .. 0.57 2 ? 6.4 6.1 0.0021 8.4 64 130 .. 534 596 .. 523 604 .. 0.81 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.001 ATG16 126 erlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +++a+ ++ +l++ +d +++ +e+ekl+ l E ++L+ l+ + e+ r T230000_1 344 TAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERER 396 44445555555555555555555555555555555555555555555444444 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0021 ATG16 64 elasssqsnskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 130 +++ s + +++ ++l+++l+ el+ + ++la +l++l++el+ e+k +ee+l++ T230000_1 534 QEQHS----RQLQEQWEELSSQLFYYGGELQSQKSTEQQLAAQLVTLQNELELAETKCALQEEKLQQ 596 22333....336789999999999999999999999999**********999999999999998876 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 1.4 0.00075 3.1 37 83 .. 345 395 .. 336 400 .. 0.78 2 ? 4.7 6.8 0.0067 27 52 106 .. 542 596 .. 534 608 .. 0.71 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00075 ADIP 37 iinviysLlqardrd....leqreslnetirkleaeierlqskierlktql 83 +++ +Ll ++++d ++ +++l++ +r leae+e+l+++ + l+++ T230000_1 345 AMAATQELLLQLQKDnrdgRQRKQELEKLMRGLEAESESLNQRLQDLSERE 395 56667788877777633334567899999*****************99875 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0067 ADIP 52 leqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklkt 106 +eq e+l+ ++ e+++++s+ ++l +ql l++el+l++ k++ +e kl++ T230000_1 542 QEQWEELSSQLFYYGGELQSQKSTEQQLAAQLVTLQNELELAETKCALQEEKLQQ 596 4556666666666677788888888888888888888888888888777777664 PP >> ExsD Antiactivator protein ExsD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 9.1 0.005 21 106 181 .. 538 612 .. 533 624 .. 0.86 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.005 ExsD 106 veeLeiqinqleikkefWsklaEkessqireqllk.lveslqtklkaqkaelvelesklkeseklvveaWPnfqksl 181 +L+ q + l + ++ E +s++ eq+l+ ++ lq +l+ + +e+kl+++ + eaW fq++ T230000_1 538 SRQLQEQWEELSSQLFYYGG--ELQSQKSTEQQLAaQLVTLQNELELAETKCALQEEKLQQDALQTAEAWAIFQEQT 612 57999999999999888665..999999999886527999******9999999********************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 650 (0.0398626); expected 326.1 (0.02) Passed bias filter: 391 (0.0239789); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.68 # Mc/sec: 6289.62 // Query: T230000_2 [L=1495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-27 93.3 8.7 9.9e-27 93.3 8.7 1.6 2 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.1 0.9 1 1.6e+04 64 79 .. 137 152 .. 127 154 .. 0.59 2 ! 93.3 8.7 6.1e-31 9.9e-27 47 121 .] 674 748 .. 661 748 .. 0.94 Alignments for each domain: == domain 1 score: -5.1 bits; conditional E-value: 1 TMEM191C 64 llllPlgflalpllyl 79 +ll Pl +l + ++ + T230000_2 137 FLLFPLRILLMYFILV 152 4666777665555544 PP == domain 2 score: 93.3 bits; conditional E-value: 6.1e-31 TMEM191C 47 gagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 +a+ + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T230000_2 674 AARLSPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 748 5666778*******************************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.67 # Mc/sec: 6383.49 // Query: T230000_3 [L=1495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 7503.40 // Query: T059138_1 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 5107.97 // Query: T059138_2 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 89 (0.00545811); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 5103.35 // Query: T059138_3 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 4943.87 // Query: T138102_1 [L=2724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.34s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 11132.72 // Query: T138102_2 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.66 # Mc/sec: 11803.09 // Query: T138102_3 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:00.86 # Mc/sec: 9058.19 // Query: T075453_1 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.85 # Mc/sec: 6320.75 // Query: T075453_2 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 7896.73 // Query: T075453_3 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.38s 00:00:01.35 Elapsed: 00:00:00.68 # Mc/sec: 7896.73 // Query: T281914_1 [L=745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.68 # Mc/sec: 3134.29 // Query: T281914_2 [L=745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4349.63 // Query: T281914_3 [L=745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 3612.40 // Query: T249669_1 [L=3998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 542 (0.0332393); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.76 # Mc/sec: 15049.47 // Query: T249669_2 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 13944.80 // Query: T249669_3 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 590 (0.036183); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.41s 00:00:02.31 Elapsed: 00:00:00.88 # Mc/sec: 12994.02 // Query: T089656_1 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.41s 00:00:01.72 Elapsed: 00:00:00.82 # Mc/sec: 11282.83 // Query: T089656_2 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.80 # Mc/sec: 11564.91 // Query: T089656_3 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.43s 00:00:01.80 Elapsed: 00:00:00.80 # Mc/sec: 11561.33 // Query: T188814_1 [L=642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 2869.77 // Query: T188814_2 [L=642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3222.20 // Query: T188814_3 [L=642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 3339.37 // Query: T368567_1 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.65 # Mc/sec: 13208.23 // Query: T368567_2 [L=3000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-11 44.1 34.4 1.3e-07 31.8 8.6 3.7 4 Cornifin Cornifin (SPRR) family Domain annotation for each model (and alignments): >> Cornifin Cornifin (SPRR) family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.5 2.9 1 1.6e+04 52 66 .. 2124 2138 .. 2114 2148 .. 0.32 2 ! 6.8 1.5 0.0004 6.5 69 118 .. 2762 2811 .. 2752 2822 .. 0.73 3 ! 31.8 8.6 7.8e-12 1.3e-07 28 124 .. 2825 2921 .. 2815 2925 .. 0.94 4 ! 29.0 17.8 5.6e-11 9.1e-07 24 125 .. 2893 2994 .. 2885 2999 .. 0.90 Alignments for each domain: == domain 1 score: -6.5 bits; conditional E-value: 1 Cornifin 52 kvpepcqtkvpepcq 66 k+ c p p++ T368567_2 2124 KAHTCCLCTPPTPSK 2138 111111111111111 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0004 Cornifin 69 vpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvp 118 p c + p +++ p c i +p i+vp +c ++ p + +v+p T368567_2 2762 FPGRCDPVLPGRSDPMPPGRCDIMVPGRYDIVVPGRCDPVLPGRSDPVLP 2811 46667777777777777777888888888888888888888877777777 PP == domain 3 score: 31.8 bits; conditional E-value: 7.8e-12 Cornifin 28 kvpepcntkvpepcqtkvpepcqtkvpepcqtkvpepcqtkvpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvpepcpst 124 vp c++ p c + p c + p c + p c t p c + c+ c i +p c +++pe+c ++ p + +v+p c T368567_2 2825 VVPGRCDPVLPGRCDPVLPGRCDPMLPGRCDPVLPGRCDTMLPGRCDPTLTGRCDLTLAGRCAIVFPGRCDPVLPERCDPVLPGGSDPVLPGRCDIM 2921 68999**************************************************************************************999755 PP == domain 4 score: 29.0 bits; conditional E-value: 5.6e-11 Cornifin 24 pchskvpepcntkvpepcqtkvpepcqtkvpepcqtkvpepcqtkvpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvpepc 121 c++ +pe c++ p + + p c vp c + p c vp c + p c++ p c + +p c +++p +c ++ p+ + +v+p c T368567_2 2893 RCDPVLPERCDPVLPGGSDPVLPGRCDIMVPGRCDPVLPGRCDIVVPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPVRSDPVLPGRC 2990 59999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP Cornifin 122 pstv 125 v T368567_2 2991 DIVV 2994 7544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 12438.39 // Query: T368567_3 [L=3000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.41s 00:00:01.62 Elapsed: 00:00:00.72 # Mc/sec: 11920.12 // Query: T053299_1 [L=2532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.78 # Mc/sec: 9286.69 // Query: T053299_2 [L=2531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.82 # Mc/sec: 8830.20 // Query: T053299_3 [L=2531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.41s 00:00:01.59 Elapsed: 00:00:00.83 # Mc/sec: 8723.81 // Query: T353289_1 [L=2562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.71 # Mc/sec: 10323.16 // Query: T353289_2 [L=2562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.39s 00:00:01.86 Elapsed: 00:00:01.08 # Mc/sec: 6786.52 // Query: T353289_3 [L=2561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 10618.24 // Query: T125342_1 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 7071.49 // Query: T125342_2 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 7719.84 // Query: T125342_3 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 7840.46 // Query: T172332_1 [L=2080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-16 61.0 0.0 2.2e-16 60.2 0.0 1.3 1 RNase_H RNase H 4.4e-05 23.6 0.3 0.00011 22.3 0.3 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.2 0.0 2.7e-20 2.2e-16 5 123 .. 594 712 .. 591 714 .. 0.85 Alignments for each domain: == domain 1 score: 60.2 bits; conditional E-value: 2.7e-20 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + + ++++vniytDS+Y++ +++ vh++ +++ +s +k+vk T172332_1 594 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASElS--EGKTVNIYTDSQYAFLTLQ--VHGALYKEKGLlNSGGKDVKY 688 68*******99999******766766.557778999****************8844..9**************9555..566644444443888899*** PP .HHHHHHHHHCHCSSEEEEEE-SC CS RNase_H 101 .kelaellkelakkkkvqlkhvkg 123 + + +ll+++ k++kv ++h++g T172332_1 689 *QGILQLLEAVWKPQKVAVMHCRG 712 **********************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.3 1.3e-08 0.00011 1 32 [. 801 832 .. 801 832 .. 0.98 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 1.3e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVi 32 H++tHlG++ l++ll +++++l++++++++V+ T172332_1 801 HETTHLGQESLEKLLGQYFYILHLSALAKTVV 832 9****************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.72 # Mc/sec: 8264.62 // Query: T172332_2 [L=2080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.86 # Mc/sec: 6919.22 // Query: T172332_3 [L=2080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 8881.38 // Query: T040693_1 [L=820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 4115.58 // Query: T040693_2 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.54 # Mc/sec: 4338.93 // Query: T040693_3 [L=819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4110.56 // Query: T260592_1 [L=1540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7596.00 // Query: T260592_2 [L=1539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.71 # Mc/sec: 6201.15 // Query: T260592_3 [L=1539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 7101.32 // Query: T201647_1 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-20 73.0 0.0 4.5e-20 72.2 0.0 1.4 1 RNase_H RNase H 3.2e-06 27.2 0.0 6.5e-06 26.2 0.0 1.5 1 rve Integrase core domain ------ inclusion threshold ------ 0.13 11.9 0.0 0.26 11.0 0.0 1.5 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.2 0.0 8.2e-24 4.5e-20 4 142 .. 92 234 .. 89 235 .. 0.83 Alignments for each domain: == domain 1 score: 72.2 bits; conditional E-value: 8.2e-24 EEEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBH CS RNase_H 4 vvvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpv 98 + +Y+DGs++ n +ge+gag+ v+ + + +++l++ +++++aEL+A+i aL+ + ++ +vniytDS Yv+ + +q vh++ k+++ + s +k+ T201647_1 92 LELYVDGSSFFNpQGERGAGCaVVTLD-TVVEARSLPQGTSAQKAELIAFIRALElS--EGGTVNIYTDSWYVFLT-LQ-VHGA**KEKGLLN-SGGKDR 185 679*********89999****777766.33556778899****************55..99*************94.33.8*****7777744.344444 PP TT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 k +e+ +ll+++ k++kv + h++ H+ + gN + D+ A++aa T201647_1 186 KYqQEILQLLEAVWKPHKVAVVHCRRHQRAstlvGLGNSRTDSEARKAA 234 44479**********************666568877**********998 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.0 1.2e-09 6.5e-06 71 117 .. 373 419 .. 369 421 .. 0.95 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 1.2e-09 rve 71 lsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 sDng++ + +++ ++ lgi+ +++++ rp + Gk Er+n+t+k+ T201647_1 373 GSDNGPASLAALVQKTAKVLGITRKLHATSRPKSSGKLERMNQTIKN 419 69*******************************************97 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 4.7e-05 0.26 2 31 .. 393 422 .. 392 440 .. 0.86 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 4.7e-05 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdell 31 gi+ ++ a +P+ g+ E++n+t+++ + T201647_1 393 GITRKLHATSRPKSSGKLERMNQTIKNSTI 422 7888899999****************9765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 2918.05 // Query: T201647_2 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-06 27.2 1.8 5.1e-06 26.5 1.8 1.4 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 1.8 3.2e-10 5.1e-06 1 39 [] 296 334 .. 296 334 .. 0.99 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 3.2e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tH G++ l++ll ++++ ++++++++V ++C++Cq T201647_2 296 HETTHVGQESLEKLLGWYLYISHLSALAKTVRQQCVTCQ 334 9*************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.68 # Mc/sec: 2360.18 // Query: T201647_3 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.63 # Mc/sec: 2547.50 // Query: T078925_1 [L=952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-40 140.0 14.0 1.5e-40 139.6 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.22 11.5 10.0 0.56 10.2 2.9 2.4 2 BRE1 BRE1 E3 ubiquitin ligase 0.38 10.1 10.2 0.68 9.3 10.2 1.3 1 MscS_porin Mechanosensitive ion channel porin domain 0.39 9.1 11.7 0.54 8.6 11.7 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 1.4 7.6 12.0 2.8 6.6 11.8 1.5 1 Spc7 Spc7 kinetochore protein 2.7 8.0 12.9 4.4 7.3 12.9 1.2 1 Tropomyosin_1 Tropomyosin like 3.5 7.8 10.2 5.3 7.2 10.2 1.3 1 Muted Organelle biogenesis, Muted-like protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 139.6 14.0 6.3e-44 1.5e-40 126 312 .] 145 332 .. 142 332 .. 0.96 Alignments for each domain: == domain 1 score: 139.6 bits; conditional E-value: 6.3e-44 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078925_1 145 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 242 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078925_1 243 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 332 ***************************************************************************************975 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 2.3 0.018 43 7 52 .. 219 264 .. 214 275 .. 0.81 2 ? 10.2 2.9 0.00024 0.56 14 69 .. 272 327 .. 261 330 .. 0.86 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.018 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamr 52 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078925_1 219 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEA 264 5677778899999999999999999999999999999998777665 PP == domain 2 score: 10.2 bits; conditional E-value: 0.00024 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078925_1 272 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 327 445667788889**************************************999986 PP >> MscS_porin Mechanosensitive ion channel porin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 10.2 0.00029 0.68 85 167 .. 215 298 .. 214 316 .. 0.93 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00029 MscS_porin 85 qrllqtssqlqelqeqlaqlnsqlrelqtrperaqqqltearqrlqeirnrLnssaasgt.plsqaqrtalqaelaalkaqiee 167 ++ +++++ + ++ e+l +++l+el+ ++r+ ++ + +q+ ++++ ++s+++g+ +ls+a + + e a+ ka+ ++ T078925_1 215 TKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEaALSNAHCKLAELEDALQKAKQDM 298 567899999*******************************************999999999********************998 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 11.7 0.00023 0.54 412 502 .. 225 311 .. 214 324 .. 0.86 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00023 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078925_1 225 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 311 44444444....46999*******************************9999999**********************************85 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 11.8 0.0012 2.8 198 287 .. 214 303 .. 206 325 .. 0.82 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0012 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkiv 287 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ T078925_1 214 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLK 303 567789999999999999999999999999999999999999999999999999999999988888888888888888887777666654 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 12.9 0.0019 4.4 8 102 .. 208 304 .. 205 311 .. 0.86 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0019 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078925_1 208 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 303 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078925_1 304 Q 304 5 PP >> Muted Organelle biogenesis, Muted-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 10.2 0.0023 5.3 56 141 .. 220 307 .. 213 313 .. 0.82 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0023 Muted 56 lpkcleslkenLsevnkkleaalekverllqkeleeeqekserlqekeekrkkeweeFlkelqkkkeevDeefeekveelk...ekYse 141 + ++++ enL ++++l++++ +++rl + e+++++ +l+++ +++++ e l++ + k +e+++ +++ +++ ++Y+e T078925_1 220 VKATVTQQGENLRRTKDELNELNCMIQRLTAE-VENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMAcmlKQYQE 307 4444555689********************99.77777799******************************999987765422266666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 855 (0.0524347); expected 326.1 (0.02) Passed bias filter: 438 (0.0268613); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.68 # Mc/sec: 4005.16 // Query: T078925_2 [L=952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0025 17.3 0.0 0.0031 17.0 0.0 1.1 1 Filament Intermediate filament protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 1.9e-07 0.0031 87 126 .. 106 145 .. 104 147 .. 0.94 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 1.9e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Filament 87 lrkkyekelnkreevEaelkalrkdldeatlarvdLekkv 126 + +ye+el++r ++E+e+ l+kd+ ++l+ +dLe+ v T078925_2 106 FLLRYEEELALRATAENEFMMLKKDVGYTYLHETDLEANV 145 5679*********************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 4863.41 // Query: T078925_3 [L=951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 4185.61 // Query: T137364_1 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.63 # Mc/sec: 10035.61 // Query: T137364_2 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.77 # Mc/sec: 8210.95 // Query: T137364_3 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.74 # Mc/sec: 8543.83 // Query: T227235_1 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 5686.98 // Query: T227235_2 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.70 # Mc/sec: 5362.01 // Query: T227235_3 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.73 # Mc/sec: 5141.66 // Query: T297931_1 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.73 # Mc/sec: 3648.54 // Query: T297931_2 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 3860.05 // Query: T297931_3 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 4093.19 // Query: T051123_1 [L=3238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-05 24.6 0.0 5.7 6.6 0.0 4.2 4 DUF3060 Protein of unknown function (DUF3060) ------ inclusion threshold ------ 0.19 12.1 6.4 7.7e+02 0.6 6.4 4.0 1 DUF296 Domain of unknown function (DUF296) Domain annotation for each model (and alignments): >> DUF3060 Protein of unknown function (DUF3060) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.8 0.0 0.0053 43 8 56 .. 495 544 .. 493 546 .. 0.87 2 ! 3.8 0.0 0.0051 41 3 56 .. 553 607 .. 543 609 .. 0.68 3 ! 6.6 0.0 0.0007 5.7 7 56 .. 611 661 .. 606 663 .. 0.92 4 ! 5.1 0.0 0.002 17 7 48 .. 674 716 .. 664 721 .. 0.64 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0053 DUF3060 8 vtltGeCeavtVsGssNtVtvd.svdkitvsGldNtVtyksGePkvsdtG 56 v+l G+ ++v+ G+ +V+++ ++ +++++G+ + V+ + + P vs +G T051123_1 495 VSLRGTFQHVSLRGTFPHVSLRgTFPHVSLRGTFQPVSLRGTFPHVSLRG 544 8999999************99724556************99999999888 PP == domain 2 score: 3.8 bits; conditional E-value: 0.0051 DUF3060 3 GssNtvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 G+ v+l G+ +v+ G+ V+++ + + ++++G+ + V+ + + P vs +G T051123_1 553 GTFQHVSLRGTFPHVSLRGTFQPVSLRGTFQpVSLRGTFQPVSLRGTFPHVSLRG 607 4444567777777777777777777776666677777777777777777777666 PP == domain 3 score: 6.6 bits; conditional E-value: 0.0007 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 v+l G+ +v+ G+ +V+++ + + ++++G+ + V+ + + P vs +G T051123_1 611 HVSLRGTFPHVSLRGTFQHVSLRGTFQpVSLRGTFQHVSLRGTFPHVSLRG 661 6999******************999999************9999***9998 PP == domain 4 score: 5.1 bits; conditional E-value: 0.002 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksG 48 v+l G+ ++v+ G+ +V+++ + + ++++G+ + V+ + + T051123_1 674 HVSLRGTFQHVSLRGTFQHVSLRGTFQhVSLRGTFQHVSLRGT 716 5667777777777777777776655555777777666666554 PP >> DUF296 Domain of unknown function (DUF296) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 6.4 0.094 7.7e+02 30 30 .. 656 656 .. 492 719 .. 0.66 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.094 E CS DUF296 30 c 30 + T051123_1 656 H 656 1 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.40u 0.41s 00:00:01.80 Elapsed: 00:00:00.77 # Mc/sec: 12030.35 // Query: T051123_2 [L=3237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 12685.63 // Query: T051123_3 [L=3237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.65 # Mc/sec: 14246.93 // Query: T188424_1 [L=5402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.44s 00:00:02.61 Elapsed: 00:00:00.90 # Mc/sec: 17171.34 // Query: T188424_2 [L=5402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.8 6.9 5.6 11 6.0 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 5.6 0.00065 11 66 103 .. 2202 2239 .. 2199 2260 .. 0.62 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00065 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188424_2 2202 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2239 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1008 (0.0618177); expected 326.1 (0.02) Passed bias filter: 548 (0.0336073); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.91u 0.50s 00:00:03.41 Elapsed: 00:00:00.94 # Mc/sec: 16440.64 // Query: T188424_3 [L=5401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 972 (0.05961); expected 326.1 (0.02) Passed bias filter: 440 (0.0269839); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.62u 0.46s 00:00:03.08 Elapsed: 00:00:00.91 # Mc/sec: 16979.50 // Query: T052633_1 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 4324.62 // Query: T052633_2 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.73 # Mc/sec: 3554.48 // Query: T052633_3 [L=906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 3599.88 // Query: T290884_1 [L=2830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 891 (0.0546425); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.68u 0.50s 00:00:03.18 Elapsed: 00:00:00.95 # Mc/sec: 8522.26 // Query: T290884_2 [L=2829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00026 19.7 3.2 0.0024 16.5 0.0 2.7 3 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.9 0.093 1.5e+03 476 489 .. 1224 1237 .. 1223 1239 .. 0.90 2 ! 2.9 0.0 0.0019 31 341 393 .. 1753 1799 .. 1736 1803 .. 0.77 3 ! 16.5 0.0 1.5e-07 0.0024 442 499 .. 1867 1924 .. 1862 1946 .. 0.83 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.093 HHHHTS-------- CS TLV_coat 476 CaALkEeCCFyadk 489 CaA CCFy +k T290884_2 1224 CAAHHQDCCFYSEK 1237 99*********876 PP == domain 2 score: 2.9 bits; conditional E-value: 0.0019 XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 341 vfacntgltpclstallnlttdlCvlaellPdislisgeyiyaidepatRvkR 393 ++ c+ l +l+n++++ C l++l +++l + ++ + + R R T290884_2 1753 WWYCGGPLL----DTLPNNWSGTCALVQLAIPFTLTFHQ--PKEGKIRHRKAR 1799 677877776....89**************9888887666..455555555555 PP == domain 3 score: 16.5 bits; conditional E-value: 1.5e-07 HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHH CS TLV_coat 442 esIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiak 499 ++++ ++l ++++ QN+ LD++ +e+G +C +k +CC ++ + si+k T290884_2 1867 DAVNGIAEQLGATSQMAWQNKIALDMIVAERGVVCIIIKTQCCTFIPNNTAPNGSIRK 1924 68899999***********************************887777777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1459 (0.0894763); expected 326.1 (0.02) Passed bias filter: 403 (0.0247148); expected 326.1 (0.02) Passed Vit filter: 276 (0.0169263); expected 16.3 (0.001) Passed Fwd filter: 61 (0.00374095); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.86u 0.52s 00:00:04.38 Elapsed: 00:00:01.04 # Mc/sec: 7782.01 // Query: T290884_3 [L=2829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 799 (0.0490004); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 111 (0.00680731); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.44s 00:00:02.61 Elapsed: 00:00:00.87 # Mc/sec: 9302.63 // Query: T381198_1 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.69 # Mc/sec: 2769.62 // Query: T381198_2 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 3028.85 // Query: T381198_3 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 3180.29 // Query: T119737_1 [L=1406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 6593.98 // Query: T119737_2 [L=1405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 5910.98 // Query: T119737_3 [L=1405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 5742.09 // Query: T112381_1 [L=2048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.72 # Mc/sec: 8137.47 // Query: T112381_2 [L=2048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 8026.00 // Query: T112381_3 [L=2048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.42s 00:00:01.48 Elapsed: 00:00:00.82 # Mc/sec: 7145.10 // Query: T260753_1 [L=2097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.93 # Mc/sec: 6450.71 // Query: T260753_2 [L=2097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 8449.52 // Query: T260753_3 [L=2097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.41s 00:00:01.51 Elapsed: 00:00:00.82 # Mc/sec: 7316.05 // Query: T325315_1 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:00.76 # Mc/sec: 5529.68 // Query: T325315_2 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 6086.52 // Query: T325315_3 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 5915.07 // Query: T091424_1 [L=1033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 13.1 6.6 0.041 12.5 6.6 1.1 1 Tim54 Inner membrane protein import complex subunit T 5.9 6.7 23.9 9.9 6.0 23.9 1.2 1 DUF2011 Fungal protein of unknown function (DUF2011) 5.9 6.8 21.7 9.6 6.1 21.7 1.2 1 RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 9.4 6.2 14.7 15 5.5 14.7 1.2 1 DUF2058 Uncharacterized protein conserved in bacteria ( Domain annotation for each model (and alignments): >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 6.6 1e-05 0.041 196 272 .. 736 814 .. 728 842 .. 0.53 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1e-05 Tim54 196 peeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasae..lppeiPell 272 ++e+ +++++++ ++e+e+ee+e +e +e kee++++e++e++e +e++++k+ yi+p+d +++ lp+ ++++ T091424_1 736 QSETPSQKKKKKGKKEREKEEKEGKEGNEGKEEKERKERKERKERKERKERKERACAYITPSDACKQQtdLPAMFSAIF 814 222222222333333333333333344455555555555666666666667788888****997554411455544444 PP >> DUF2011 Fungal protein of unknown function (DUF2011) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 23.9 0.0024 9.9 77 143 .. 726 788 .. 711 791 .. 0.60 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0024 DUF2011 77 kaaakieaeakkekekkkkrkrpGKKrRialrkreaakkekeeaekkekekrkrknreKklkrRqke 143 + ++++++ +++++ ++k+k++GKK+R + k+ ++ +e +e+ k+ ke+++rk+r+ ++ ke T091424_1 726 DCTTALQPG-QQSETPSQKKKKKGKKEREKEEKEGKEGNEGKEE-KERKERKERKERK--ERKERKE 788 334444444.44455789999********999988888877754.2233333333333..3333333 PP >> RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 21.7 0.0024 9.6 142 188 .. 737 786 .. 719 803 .. 0.45 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0024 XXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXX..XXXX CS RNA_polI_A34 142 kkkpkakkkekkkkkkkaaeee........eeapkkkkkkkkkkkekkeeekkee 188 +++p +kkk+k kk+++++e+e ee+++k++k++k++ke+ke + T091424_1 737 SETPSQKKKKKGKKEREKEEKEgkegnegkEEKERKERKERKERKERKE-----R 786 2222222222222222222222332221222222222222222222222.....1 PP >> DUF2058 Uncharacterized protein conserved in bacteria (DUF2058) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 14.7 0.0036 15 23 91 .. 740 806 .. 730 812 .. 0.56 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0036 DUF2058 23 ekrkqkkqkkkkkaedeakeaaeeakaekaerdrelneqrkeeaekkalkaqirqlieenrlkkkegdi 91 ++k+kk+ kk+ ++++++ +e ++ k e++r+ +++rke++e+k++k + i+ + k++ d+ T091424_1 740 PSQKKKKKG--KKEREKEEKEGKEGNEGKEEKERKERKERKERKERKERKERACAYITPSDACKQQTDL 806 223333333..3344455666666666667777777777777777777766666666666665556665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1376 (0.0843861); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.61 # Mc/sec: 4844.65 // Query: T091424_2 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.74 9.9 17.0 1.6 8.9 17.0 1.4 1 AP3D1 AP-3 complex subunit delta-1 Domain annotation for each model (and alignments): >> AP3D1 AP-3 complex subunit delta-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 17.0 9.8e-05 1.6 70 121 .. 743 793 .. 697 802 .. 0.64 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 9.8e-05 AP3D1 70 qqesrkskkkakeekkkkkkkkkkkkkkkk.kkkkkkeeesssseedikplha 121 + ++k+++k++++ +kk kk+ k kk+kk kk+kk+++e+++++e ++p+h+ T091424_2 743 K--KKKKERKKERKRRKKGKKGMKGKKRKKgKKGKKEKKEKKEKKEKKEPVHI 793 2..22222222222333333344444444466777777777888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1494 (0.0916227); expected 326.1 (0.02) Passed bias filter: 369 (0.0226297); expected 326.1 (0.02) Passed Vit filter: 106 (0.00650067); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.61 # Mc/sec: 4839.96 // Query: T091424_3 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 682 (0.0418251); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 5090.30 // Query: T354621_1 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 10681.97 // Query: T354621_2 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.62 # Mc/sec: 10681.97 // Query: T354621_3 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 10348.16 // Query: T164714_1 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 537 (0.0329327); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 10422.22 // Query: T164714_2 [L=2367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.91 # Mc/sec: 7441.30 // Query: T164714_3 [L=2367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 9404.98 // Query: T090335_1 [L=2205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 10691.75 // Query: T090335_2 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-32 111.2 10.9 3.4e-32 110.3 10.9 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.3 10.9 2.1e-36 3.4e-32 12 89 .] 304 380 .. 299 380 .. 0.97 Alignments for each domain: == domain 1 score: 110.3 bits; conditional E-value: 2.1e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090335_2 304 EPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 380 79*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.75 # Mc/sec: 8407.03 // Query: T090335_3 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-11 43.5 2.3 5.5e-11 42.3 2.3 1.5 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 2.3 3.4e-15 5.5e-11 12 55 .. 260 303 .. 252 316 .. 0.90 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 3.4e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090335_3 260 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 303 566889************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 8757.32 // Query: T323198_1 [L=2338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-48 161.4 550.3 1.5e-15 57.0 9.2 47.5 43 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.5 1.0 0.00025 4.1 4 24 .. 85 105 .. 84 122 .. 0.89 2 ? -0.9 15.6 0.11 1.8e+03 7 36 .. 162 190 .. 135 191 .. 0.73 3 ! 22.9 3.9 4.2e-09 6.8e-05 1 31 [. 188 217 .. 188 230 .. 0.88 4 ! 16.0 2.8 5.8e-07 0.0094 1 35 [. 231 264 .. 231 273 .. 0.90 5 ! 43.8 11.0 1.2e-15 1.9e-11 1 50 [] 275 323 .. 275 323 .. 0.99 6 ! 22.9 0.8 4e-09 6.6e-05 28 50 .] 322 344 .. 321 344 .. 0.97 7 ? -1.3 0.7 0.15 2.4e+03 1 13 [. 349 361 .. 345 392 .. 0.60 8 ! 8.9 1.8 9.8e-05 1.6 20 41 .. 420 446 .. 394 449 .. 0.80 9 ? 0.5 3.4 0.039 6.3e+02 5 26 .. 450 470 .. 450 471 .. 0.94 10 ! 16.7 1.7 3.4e-07 0.0056 2 36 .. 509 542 .. 509 542 .. 0.98 11 ? -4.6 18.4 1 1.6e+04 1 39 [. 540 602 .. 540 631 .. 0.61 12 ? 2.0 7.6 0.014 2.2e+02 1 50 [] 592 652 .. 592 652 .. 0.78 13 ! 3.6 0.2 0.0044 72 16 37 .. 651 672 .. 650 682 .. 0.82 14 ? 2.4 14.2 0.01 1.6e+02 2 33 .. 688 750 .. 688 750 .. 0.85 15 ! 24.4 3.3 1.4e-09 2.3e-05 2 35 .. 752 784 .. 752 788 .. 0.93 16 ! 4.6 0.8 0.0022 35 28 49 .. 798 819 .. 791 819 .. 0.88 17 ! 13.0 6.2 5.1e-06 0.084 10 48 .. 823 870 .. 821 871 .. 0.97 18 ? 1.5 0.3 0.02 3.3e+02 7 27 .. 872 892 .. 871 893 .. 0.72 19 ? 0.8 0.1 0.033 5.3e+02 1 13 [. 887 899 .. 887 910 .. 0.73 20 ! 9.3 1.0 7e-05 1.1 3 29 .. 910 936 .. 908 939 .. 0.90 21 ! 14.4 1.4 1.8e-06 0.03 1 30 [. 940 968 .. 940 971 .. 0.96 22 ? 0.3 4.8 0.047 7.6e+02 18 50 .] 975 1011 .. 972 1011 .. 0.80 23 ! 9.6 3.2 6e-05 0.98 8 43 .. 1012 1046 .. 1011 1051 .. 0.89 24 ! 20.2 15.6 2.8e-08 0.00046 2 49 .. 1059 1105 .. 1058 1105 .. 0.94 25 ? -2.2 0.0 0.28 4.5e+03 7 15 .. 1106 1113 .. 1106 1118 .. 0.81 26 ! 9.9 0.6 4.6e-05 0.75 1 15 [. 1121 1134 .. 1121 1141 .. 0.82 27 ! 20.7 14.2 1.9e-08 0.00032 1 39 [. 1142 1192 .. 1142 1195 .. 0.93 28 ! 24.3 24.9 1.5e-09 2.5e-05 1 50 [] 1196 1279 .. 1196 1279 .. 0.95 29 ! 8.5 7.5 0.00013 2.1 29 50 .] 1279 1300 .. 1277 1300 .. 0.96 30 ! 20.9 3.0 1.8e-08 0.00029 17 50 .] 1300 1333 .. 1300 1333 .. 0.96 31 ! 57.0 9.2 9e-20 1.5e-15 1 50 [] 1338 1385 .. 1338 1385 .. 0.99 32 ? -2.5 7.6 0.34 5.6e+03 5 50 .] 1386 1442 .. 1386 1442 .. 0.71 33 ? 0.0 15.3 0.056 9.2e+02 5 50 .] 1419 1476 .. 1415 1476 .. 0.78 34 ? -5.7 12.1 1 1.6e+04 6 50 .] 1513 1560 .. 1511 1560 .. 0.78 35 ? -3.1 0.5 0.55 8.9e+03 5 23 .. 1586 1617 .. 1582 1620 .. 0.71 36 ? -4.8 3.5 1 1.6e+04 6 42 .. 1636 1675 .. 1634 1682 .. 0.55 37 ? -2.2 0.7 0.28 4.5e+03 6 23 .. 1729 1759 .. 1717 1782 .. 0.63 38 ? -7.1 6.1 1 1.6e+04 6 36 .. 1778 1838 .. 1775 1848 .. 0.46 39 ! 2.6 0.9 0.0087 1.4e+02 8 27 .. 1981 1999 .. 1978 2001 .. 0.87 40 ! 11.3 10.5 1.8e-05 0.29 14 48 .. 2040 2086 .. 2035 2087 .. 0.74 41 ? -6.1 12.4 1 1.6e+04 9 45 .. 2090 2135 .. 2089 2140 .. 0.62 42 ? -14.6 23.8 1 1.6e+04 8 46 .. 2141 2192 .. 2139 2230 .. 0.78 43 ! 22.5 3.2 5.5e-09 8.9e-05 2 36 .. 2236 2269 .. 2235 2276 .. 0.91 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00025 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323198_1 85 APTSRQPLQAQNFLQSASTDQ 105 9********999999987655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323198_1 162 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 190 345555.**********************9 PP == domain 3 score: 22.9 bits; conditional E-value: 4.2e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323198_1 188 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 217 9***********.*****************9 PP == domain 4 score: 16.0 bits; conditional E-value: 5.8e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323198_1 231 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 264 57*******9996..7*******************9 PP == domain 5 score: 43.8 bits; conditional E-value: 1.2e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323198_1 275 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 323 8***********.************************************9 PP == domain 6 score: 22.9 bits; conditional E-value: 4e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323198_1 322 CLLVAYEGPKSPQVDLSRPSSCL 344 9*********************9 PP == domain 7 score: -1.3 bits; conditional E-value: 0.15 DUF4705 1 PgpAPasrrpLqa 13 +gp as+ Lqa T323198_1 349 TGPTSASWGLLQA 361 4555555555665 PP == domain 8 score: 8.9 bits; conditional E-value: 9.8e-05 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323198_1 420 NSLCRPCSCLPGASPGPALaswrlPQA 446 5799*************9965555555 PP == domain 9 score: 0.5 bits; conditional E-value: 0.039 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323198_1 450 PACQQPQQ-AQLFPHSGPFRPN 470 9*******.*********9996 PP == domain 10 score: 16.7 bits; conditional E-value: 3.4e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323198_1 509 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 542 59*********.**********************9 PP == domain 11 score: -4.6 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323198_1 540 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 602 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 12 score: 2.0 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323198_1 592 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 652 789999999646557888895555444455679***********99999999999999887 PP == domain 13 score: 3.6 bits; conditional E-value: 0.0044 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323198_1 651 SLPHSILRKLSICLTVASPGHE 672 67888888889*********87 PP == domain 14 score: 2.4 bits; conditional E-value: 0.01 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323198_1 688 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 750 9**********9999999999999999999998888888888888888888888888888776 PP == domain 15 score: 24.4 bits; conditional E-value: 1.4e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323198_1 752 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 784 89*********.*******************985 PP == domain 16 score: 4.6 bits; conditional E-value: 0.0022 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323198_1 798 FLQSASPGQALPPKGFCRPKSS 819 6888***************997 PP == domain 17 score: 13.0 bits; conditional E-value: 5.1e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323198_1 823 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 870 9*********************************************98 PP == domain 18 score: 1.5 bits; conditional E-value: 0.02 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323198_1 872 SQWPLQAKIVLKSASPGPTPS 892 689999766777777777665 PP == domain 19 score: 0.8 bits; conditional E-value: 0.033 DUF4705 1 PgpAPasrrpLqa 13 Pgp P r+ Lqa T323198_1 887 PGPTPSYRWLLQA 899 9***********7 PP == domain 20 score: 9.3 bits; conditional E-value: 7e-05 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323198_1 910 PALVCKWPLQEQNCLKSASPGPASCFP 936 9**********9*******99998776 PP == domain 21 score: 14.4 bits; conditional E-value: 1.8e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323198_1 940 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 968 8***********.****************9 PP == domain 22 score: 0.3 bits; conditional E-value: 0.047 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323198_1 975 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 1011 567777888888888866567799999*********8 PP == domain 23 score: 9.6 bits; conditional E-value: 6e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323198_1 1012 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1046 57777.999*********************998877 PP == domain 24 score: 20.2 bits; conditional E-value: 2.8e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323198_1 1059 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1105 9********995..4689999**************************97 PP == domain 25 score: -2.2 bits; conditional E-value: 0.28 DUF4705 7 srrpLqapa 15 srrpLq ++ T323198_1 1106 SRRPLQ-AQ 1113 79****.66 PP == domain 26 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323198_1 1121 PGPAPASRCPLQA-Q 1134 9***********4.4 PP == domain 27 score: 20.7 bits; conditional E-value: 1.9e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323198_1 1142 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1192 9*******************************9.89**********876666 PP == domain 28 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323198_1 1196 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1279 8*********************************************6515699*****************************98 PP == domain 29 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323198_1 1279 LPASSPGPALPPGCVSRPDCCL 1300 9********************9 PP == domain 30 score: 20.9 bits; conditional E-value: 1.8e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323198_1 1300 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1333 6889****************************87 PP == domain 31 score: 57.0 bits; conditional E-value: 9e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323198_1 1338 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1385 9*********************************************..97 PP == domain 32 score: -2.5 bits; conditional E-value: 0.34 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323198_1 1386 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1442 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 33 score: 0.0 bits; conditional E-value: 0.056 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323198_1 1419 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1476 599*****888888888876665555556677889999999888886799999*9998 PP == domain 34 score: -5.7 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.paslqasglsrpsaqLpvAsa..GpklppagLsrPssCL 50 as+rpL s ++ gl ps +Lp+ s+ + lp +gL+ P CL T323198_1 1513 ASHRPLPC*ESSRPHGGLPGPSPCLPPGSPraAQFLPHGGLLMPNACL 1560 788888556578899999999999999986224556999999999998 PP == domain 35 score: -3.1 bits; conditional E-value: 0.55 DUF4705 5 PasrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323198_1 1586 LASHRPLPC*ersa*apclapaPAMLREVGVS 1617 58888886677777777777777777777665 PP == domain 36 score: -4.8 bits; conditional E-value: 1 DUF4705 6 asrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL ++ l p + + +++a+p+l ++g T323198_1 1636 ASHRPLPR*erla*APCLTLA---PPTLTPCLTPAPPTLTEVG 1675 566666555555553333222...4555556666666666555 PP == domain 37 score: -2.2 bits; conditional E-value: 0.28 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323198_1 1729 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 1759 5555554477777777777777777776665 PP == domain 38 score: -7.1 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGp 36 as+rpL p++l + p + + ++ a+p T323198_1 1778 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPP 1838 5666665555555655555555555555553333333333333221102223333444444 PP == domain 39 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323198_1 1981 ARPLQ-THLQPPGVLSGPSS 1999 69***.99999999999987 PP == domain 40 score: 11.3 bits; conditional E-value: 1.8e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323198_1 2040 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 2086 555699*******************6666666666666666666666 PP == domain 41 score: -6.1 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323198_1 2090 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 2135 7888.666666654122222277778886577888865558888888 PP == domain 42 score: -14.6 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323198_1 2141 SQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 2192 6888887777633333333667788888888888888888788888888888 PP == domain 43 score: 22.5 bits; conditional E-value: 5.5e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323198_1 2236 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 2269 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 9038.68 // Query: T323198_2 [L=2337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-72 238.7 527.4 4e-17 62.0 8.0 46.7 47 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.1 0.18 3e+03 38 47 .. 86 95 .. 85 99 .. 0.81 2 ? -0.5 0.1 0.085 1.4e+03 7 34 .. 98 124 .. 93 126 .. 0.86 3 ! 34.3 7.0 1.2e-12 1.9e-08 3 49 .. 126 171 .. 124 172 .. 0.96 4 ! 30.8 7.0 1.4e-11 2.3e-07 1 38 [. 177 213 .. 177 223 .. 0.93 5 ! 23.9 4.6 2e-09 3.3e-05 5 38 .. 224 256 .. 218 265 .. 0.92 6 ! 22.5 6.2 5.3e-09 8.7e-05 5 38 .. 268 300 .. 267 302 .. 0.95 7 ! 10.5 3.2 3e-05 0.49 1 34 [. 296 324 .. 296 335 .. 0.77 8 ! 22.5 16.3 5.6e-09 9.2e-05 1 49 [. 338 385 .. 338 386 .. 0.99 9 ! 8.9 1.8 9.9e-05 1.6 8 40 .. 399 430 .. 396 433 .. 0.84 10 ! 10.9 12.6 2.3e-05 0.38 2 34 .. 424 455 .. 423 483 .. 0.59 11 ! 12.8 0.5 5.6e-06 0.092 16 35 .. 511 530 .. 504 531 .. 0.92 12 ! 31.2 8.9 1.1e-11 1.7e-07 2 50 .] 530 577 .. 529 577 .. 0.97 13 ? -1.8 0.1 0.21 3.5e+03 9 25 .. 579 604 .. 578 607 .. 0.56 14 ? -0.1 2.6 0.062 1e+03 1 33 [. 625 657 .. 625 659 .. 0.91 15 ! 14.9 6.5 1.3e-06 0.021 4 44 .. 661 718 .. 661 724 .. 0.97 16 ! 9.7 0.1 5.4e-05 0.88 14 37 .. 752 775 .. 743 780 .. 0.88 17 ! 23.9 2.8 2e-09 3.2e-05 18 50 .] 798 830 .. 776 830 .. 0.83 18 ! 4.5 1.0 0.0023 37 28 47 .. 860 879 .. 852 883 .. 0.85 19 ? 1.6 1.1 0.018 3e+02 7 27 .. 882 901 .. 880 906 .. 0.91 20 ? -0.5 0.2 0.085 1.4e+03 7 24 .. 903 919 .. 901 923 .. 0.87 21 ! 9.3 9.3 7.1e-05 1.2 6 38 .. 923 965 .. 919 971 .. 0.89 22 ! 10.2 6.3 3.7e-05 0.61 1 33 [. 973 1004 .. 973 1004 .. 0.95 23 ! 3.8 2.5 0.0038 61 19 43 .. 1011 1036 .. 1008 1041 .. 0.80 24 ! 15.5 12.7 8.4e-07 0.014 1 38 [. 1026 1083 .. 1026 1090 .. 0.87 25 ? 2.0 13.9 0.014 2.2e+02 1 49 [. 1079 1136 .. 1079 1137 .. 0.95 26 ? -1.4 7.5 0.16 2.6e+03 7 40 .. 1158 1189 .. 1156 1189 .. 0.79 27 ? 1.9 9.5 0.014 2.3e+02 3 26 .. 1187 1209 .. 1178 1209 .. 0.93 28 ! 15.0 2.1 1.2e-06 0.02 14 36 .. 1220 1242 .. 1211 1247 .. 0.91 29 ? 2.3 0.1 0.011 1.8e+02 27 39 .. 1245 1257 .. 1244 1261 .. 0.86 30 ! 5.6 11.8 0.001 17 1 38 [. 1252 1298 .. 1252 1306 .. 0.85 31 ! 15.9 2.3 6.4e-07 0.01 1 26 [. 1327 1351 .. 1327 1353 .. 0.95 32 ? -1.6 4.4 0.18 3e+03 1 29 [. 1360 1398 .. 1360 1403 .. 0.77 33 ? -2.3 11.4 0.3 4.8e+03 7 46 .. 1410 1453 .. 1405 1465 .. 0.85 34 ? -4.5 5.2 1 1.6e+04 10 39 .. 1445 1471 .. 1444 1483 .. 0.53 35 ? -1.8 12.6 0.22 3.6e+03 5 50 .] 1496 1549 .. 1470 1549 .. 0.73 36 ? -9.9 11.9 1 1.6e+04 13 23 .. 1618 1633 .. 1600 1716 .. 0.71 37 ? -2.8 0.8 0.42 6.9e+03 6 23 .. 1745 1775 .. 1744 1799 .. 0.66 38 ? -1.3 0.1 0.14 2.3e+03 6 13 .. 1794 1801 .. 1790 1816 .. 0.74 39 ? -3.4 0.1 0.69 1.1e+04 4 11 .. 1846 1853 .. 1846 1870 .. 0.83 40 ! 13.2 9.7 4.5e-06 0.073 17 50 .] 1978 2011 .. 1956 2011 .. 0.85 41 ! 27.4 3.3 1.6e-10 2.6e-06 17 50 .] 2011 2044 .. 2010 2044 .. 0.96 42 ! 62.0 8.0 2.5e-21 4e-17 1 50 [] 2049 2098 .. 2049 2098 .. 0.99 43 ! 12.0 0.9 1.1e-05 0.17 25 44 .. 2094 2113 .. 2093 2114 .. 0.91 44 ! 10.4 4.7 3.3e-05 0.54 24 49 .. 2125 2149 .. 2119 2149 .. 0.80 45 ! 3.8 1.5 0.0038 62 26 39 .. 2148 2163 .. 2148 2172 .. 0.72 46 ? 2.2 0.7 0.012 1.9e+02 29 50 .] 2174 2196 .. 2174 2196 .. 0.86 47 ! 20.8 13.9 1.8e-08 0.0003 1 39 [. 2201 2261 .. 2201 2268 .. 0.95 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.18 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323198_2 86 LPPGSLSRPR 95 6889999985 PP == domain 2 score: -0.5 bits; conditional E-value: 0.085 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323198_2 98 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 124 567788.999**********99999877 PP == domain 3 score: 34.3 bits; conditional E-value: 1.2e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323198_2 126 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 171 689*******.************************************ PP == domain 4 score: 30.8 bits; conditional E-value: 1.4e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323198_2 177 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 213 9***********.***********************86 PP == domain 5 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323198_2 224 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 256 899*****.***********************98 PP == domain 6 score: 22.5 bits; conditional E-value: 5.3e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323198_2 268 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 300 9*******.***********************86 PP == domain 7 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323198_2 296 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 324 9***********5444.....4446888888887 PP == domain 8 score: 22.5 bits; conditional E-value: 5.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323198_2 338 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 385 9***********.************************************ PP == domain 9 score: 8.9 bits; conditional E-value: 9.9e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323198_2 399 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 430 67799..889999****************99544 PP == domain 10 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323198_2 424 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 455 9**********.666666666666666666553 PP == domain 11 score: 12.8 bits; conditional E-value: 5.6e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323198_2 511 PLPHSGPSRPRWCLTVASSG 530 69****************98 PP == domain 12 score: 31.2 bits; conditional E-value: 1.1e-11 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323198_2 530 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 577 89*********.*********************************9887 PP == domain 13 score: -1.8 bits; conditional E-value: 0.21 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323198_2 579 RRLQDelilpvrlqARLLPHNNLLWS 604 56666666633333666666666555 PP == domain 14 score: -0.1 bits; conditional E-value: 0.062 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323198_2 625 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 657 89999*******888999999999999999988 PP == domain 15 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323198_2 661 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 718 88******************************************************97 PP == domain 16 score: 9.7 bits; conditional E-value: 5.4e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323198_2 752 AKLLPFGSLYRPSSCLAIAFVGQD 775 67899999**************95 PP == domain 17 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323198_2 798 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 830 455566899***********************9 PP == domain 18 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323198_2 860 LLQLASPDQALPPSGLYRPK 879 6889***************6 PP == domain 19 score: 1.6 bits; conditional E-value: 0.018 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323198_2 882 SSQPLQ-GQLLATGGFCRPKS 901 689***.***********986 PP == domain 20 score: -0.5 bits; conditional E-value: 0.085 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323198_2 903 SSQPLH-TQLLSVSGLCR 919 78****.*****999876 PP == domain 21 score: 9.3 bits; conditional E-value: 7.1e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323198_2 923 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 965 788999999999999999********************99888 PP == domain 22 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323198_2 973 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 1004 8***********.*****9999999******98 PP == domain 23 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323198_2 1011 SRGLNGPSPCLSAASTGPAStSQWAL 1036 78999999999999999976566555 PP == domain 24 score: 15.5 bits; conditional E-value: 8.4e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323198_2 1026 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1083 688888888888888888888888888888888**********************876 PP == domain 25 score: 2.0 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323198_2 1079 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1136 89999999*************9899******************************997 PP == domain 26 score: -1.4 bits; conditional E-value: 0.16 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323198_2 1158 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 1189 679***777899******98..667777777765 PP == domain 27 score: 1.9 bits; conditional E-value: 0.014 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323198_2 1187 RPPASRRPAQ-AQPQPHSGLSTPS 1209 66********.************7 PP == domain 28 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323198_2 1220 PKLLPLGRFGRPSSRLPVASSGP 1242 899*******************9 PP == domain 29 score: 2.3 bits; conditional E-value: 0.011 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323198_2 1245 SFLTTAFPGPVFP 1257 79*********97 PP == domain 30 score: 5.6 bits; conditional E-value: 0.001 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323198_2 1252 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1298 7888889**************766651678***************86 PP == domain 31 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323198_2 1327 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1351 9***********.9***********7 PP == domain 32 score: -1.6 bits; conditional E-value: 0.18 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323198_2 1360 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1398 8899998.77799988888888888888877776666666 PP == domain 33 score: -2.3 bits; conditional E-value: 0.3 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323198_2 1410 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1453 567799.9**********************997777545666655 PP == domain 34 score: -4.5 bits; conditional E-value: 1 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323198_2 1445 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1471 899.5555555..33444444455444442 PP == domain 35 score: -1.8 bits; conditional E-value: 0.22 DUF4705 5 PasrrpLqa....paslqasglsrps..aqLpvAsaGpkl..ppagLsrPssCL 50 Pas++ L l+++g+s + + +++As+G+++ pa++ +Pss+L T323198_2 1496 PASHWLLPR*evgVSPLPHTGPSHAEraLAPTAASRGQVPacLPAARVQPSSSL 1549 3444433337777556999999999633788******9998877********98 PP == domain 36 score: -9.9 bits; conditional E-value: 1 DUF4705 13 a.....paslqasgls 23 p++l+ +gls T323198_2 1618 PclapaPPTLREVGLS 1633 0444444444444444 PP == domain 37 score: -2.8 bits; conditional E-value: 0.42 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323198_2 1745 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 1775 7888887777777777777777777777666 PP == domain 38 score: -1.3 bits; conditional E-value: 0.14 DUF4705 6 asrrpLqa 13 as+rpL++ T323198_2 1794 ASHRPLHT 1801 999***95 PP == domain 39 score: -3.4 bits; conditional E-value: 0.69 DUF4705 4 APasrrpL 11 A as+rpL T323198_2 1846 ALASHRPL 1853 889****9 PP == domain 40 score: 13.2 bits; conditional E-value: 4.5e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323198_2 1978 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 2011 45568**************************987 PP == domain 41 score: 27.4 bits; conditional E-value: 1.6e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323198_2 2011 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 2044 8999****************************87 PP == domain 42 score: 62.0 bits; conditional E-value: 2.5e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323198_2 2049 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 2098 9***********************************************98 PP == domain 43 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323198_2 2094 SSSSLPAASAGLSCPQVGLE 2113 6899**************96 PP == domain 44 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323198_2 2125 GPSSV-LLASPGAKLPRVSLSRPSSS 2149 45555.579***************97 PP == domain 45 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323198_2 2148 SSCLPVASFGPAQlmA 2163 79*********86443 PP == domain 46 score: 2.2 bits; conditional E-value: 0.012 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323198_2 2174 LLVASSGPELdLQSAFAGPASCL 2196 789*******8677888999998 PP == domain 47 score: 20.8 bits; conditional E-value: 1.8e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323198_2 2201 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 2261 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 9416.56 // Query: T323198_3 [L=2337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-62 206.2 532.5 4.1e-08 33.2 4.4 49.9 47 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 2.9 2.3e-07 0.0038 29 48 .. 87 106 .. 78 106 .. 0.95 2 ! 11.4 3.8 1.6e-05 0.26 2 43 .. 114 155 .. 114 160 .. 0.90 3 ! 25.6 6.2 6e-10 9.8e-06 1 36 [. 166 200 .. 166 202 .. 0.94 4 ! 7.5 15.3 0.00026 4.3 3 50 .] 200 268 .. 198 284 .. 0.85 5 ! 11.9 2.7 1.1e-05 0.18 3 26 .. 287 309 .. 286 316 .. 0.91 6 ! 14.6 4.9 1.6e-06 0.026 10 39 .. 336 364 .. 336 366 .. 0.96 7 ! 19.7 0.2 4e-08 0.00065 22 47 .. 380 405 .. 372 407 .. 0.91 8 ! 20.5 6.1 2.3e-08 0.00037 8 37 .. 419 447 .. 412 449 .. 0.90 9 ! 3.3 0.7 0.0052 85 24 39 .. 446 461 .. 445 463 .. 0.85 10 ? -0.1 0.3 0.063 1e+03 20 38 .. 505 522 .. 477 529 .. 0.63 11 ! 10.8 3.7 2.4e-05 0.4 2 45 .. 519 561 .. 518 564 .. 0.87 12 ? 1.0 1.4 0.029 4.7e+02 19 39 .. 556 576 .. 553 586 .. 0.89 13 ! 6.3 3.8 0.00062 10 19 49 .. 587 619 .. 583 619 .. 0.87 14 ! 5.7 10.2 0.00098 16 5 49 .. 651 691 .. 623 691 .. 0.94 15 ! 4.3 0.9 0.0026 43 1 19 [. 697 714 .. 697 717 .. 0.91 16 ! 17.1 9.3 2.7e-07 0.0043 1 40 [. 718 768 .. 718 771 .. 0.94 17 ! 3.3 2.6 0.0055 90 30 49 .. 789 808 .. 784 809 .. 0.79 18 ? -2.2 0.1 0.28 4.5e+03 23 33 .. 820 830 .. 810 831 .. 0.63 19 ! 18.2 0.3 1.2e-07 0.002 23 48 .. 865 890 .. 859 890 .. 0.89 20 ! 23.9 0.9 2e-09 3.3e-05 29 50 .] 892 913 .. 892 913 .. 0.99 21 ! 12.0 0.4 1e-05 0.16 31 47 .. 915 931 .. 915 934 .. 0.94 22 ! 4.5 1.4 0.0023 38 14 39 .. 930 955 .. 930 959 .. 0.89 23 ! 8.4 2.1 0.00014 2.3 4 30 .. 965 990 .. 963 993 .. 0.89 24 ! 6.4 0.5 0.00056 9.2 3 18 .. 996 1010 .. 995 1014 .. 0.87 25 ! 22.2 14.5 6.6e-09 0.00011 1 50 [] 1015 1063 .. 1015 1063 .. 0.91 26 ! 8.3 2.2 0.00014 2.3 21 38 .. 1055 1072 .. 1047 1080 .. 0.82 27 ! 24.9 7.6 9.7e-10 1.6e-05 2 50 .] 1069 1126 .. 1069 1126 .. 0.81 28 ! 27.4 7.0 1.6e-10 2.7e-06 20 50 .] 1117 1147 .. 1116 1147 .. 0.96 29 ! 15.9 9.3 6.4e-07 0.01 16 49 .. 1134 1167 .. 1132 1169 .. 0.91 30 ! 2.7 12.0 0.0082 1.3e+02 17 50 .] 1156 1201 .. 1154 1201 .. 0.81 31 ? 1.6 5.2 0.018 2.9e+02 14 38 .. 1186 1210 .. 1185 1226 .. 0.79 32 ! 7.3 13.7 0.00029 4.8 2 49 .. 1230 1288 .. 1229 1288 .. 0.68 33 ? 0.8 22.5 0.033 5.3e+02 10 42 .. 1292 1356 .. 1262 1375 .. 0.71 34 ! 33.2 4.4 2.5e-12 4.1e-08 19 50 .] 1389 1420 .. 1378 1420 .. 0.95 35 ! 17.8 17.1 1.6e-07 0.0026 1 50 [] 1425 1486 .. 1425 1486 .. 0.96 36 ? -9.2 10.7 1 1.6e+04 3 37 .. 1515 1549 .. 1514 1557 .. 0.63 37 ? -1.7 0.3 0.2 3.3e+03 5 39 .. 1569 1617 .. 1569 1624 .. 0.72 38 ? -2.4 0.1 0.33 5.4e+03 30 44 .. 1635 1649 .. 1633 1655 .. 0.81 39 ? -3.4 0.6 0.67 1.1e+04 6 22 .. 1761 1790 .. 1760 1801 .. 0.68 40 ? -2.0 0.1 0.24 3.9e+03 31 46 .. 1903 1922 .. 1887 1923 .. 0.78 41 ? -0.3 9.6 0.072 1.2e+03 19 39 .. 1990 2011 .. 1977 2023 .. 0.69 42 ! 7.5 3.9 0.00026 4.3 1 25 [. 2038 2061 .. 2038 2064 .. 0.94 43 ! 12.5 0.4 7.2e-06 0.12 2 15 .. 2072 2084 .. 2072 2091 .. 0.82 44 ! 13.0 18.9 5.2e-06 0.085 1 37 [. 2092 2171 .. 2092 2174 .. 0.98 45 ! 2.6 14.4 0.0092 1.5e+02 1 46 [. 2168 2213 .. 2168 2214 .. 0.57 46 ! 14.0 4.0 2.4e-06 0.04 16 38 .. 2227 2249 .. 2225 2258 .. 0.86 47 ? 2.2 0.3 0.012 2e+02 2 22 .. 2246 2265 .. 2245 2268 .. 0.86 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 2.3e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323198_3 87 LPAASPGPELSPVSLHRPSS 106 9*****************98 PP == domain 2 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323198_3 114 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 155 788********.***********************99765555 PP == domain 3 score: 25.6 bits; conditional E-value: 6e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323198_3 166 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 200 9***********.*******************9755 PP == domain 4 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323198_3 200 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 268 5569****************************************9999999999999555566666665 PP == domain 5 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323198_3 287 PALASRWPLQ-AQLLSQDVISRPK 309 9*********.******9999995 PP == domain 6 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323198_3 336 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 364 9**.************************98 PP == domain 7 score: 19.7 bits; conditional E-value: 4e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323198_3 380 FGPVPVQLTATNVGPKLPQVKLSRPA 405 78889********************5 PP == domain 8 score: 20.5 bits; conditional E-value: 2.3e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323198_3 419 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 447 69***.**********************96 PP == domain 9 score: 3.3 bits; conditional E-value: 0.0052 DUF4705 24 rpsaqLpvAsaGpklp 39 + sa+Lp+As G lp T323198_3 446 QVSACLPAASTGTALP 461 569*********9987 PP == domain 10 score: -0.1 bits; conditional E-value: 0.063 DUF4705 20 sglsrpsaqLpvAsaGpkl 38 + ++s++L+v +++p T323198_3 505 R-TLQASLCLTVDPPDPDG 522 4.6799******9999976 PP == domain 11 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323198_3 519 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 561 5666889999*.***********************998888876 PP == domain 12 score: 1.0 bits; conditional E-value: 0.029 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323198_3 556 PRRLFQAQLLPFAACPGPECP 576 789999**************7 PP == domain 13 score: 6.3 bits; conditional E-value: 0.00062 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323198_3 587 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 619 78999***************65557999*9997 PP == domain 14 score: 5.7 bits; conditional E-value: 0.00098 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323198_3 651 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 691 89999999.9***************97...5778999******** PP == domain 15 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323198_3 697 PGTALASWQALQ-AQILQK 714 9***********.999885 PP == domain 16 score: 17.1 bits; conditional E-value: 2.7e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323198_3 718 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 768 889*******************************************98555 PP == domain 17 score: 3.3 bits; conditional E-value: 0.0055 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323198_3 789 LTHTPVPKLPPVSQSRPSSS 808 5556779***********97 PP == domain 18 score: -2.2 bits; conditional E-value: 0.28 DUF4705 23 srpsaqLpvAs 33 +psa++ +As T323198_3 820 KSPSAGPAPAS 830 55666666665 PP == domain 19 score: 18.2 bits; conditional E-value: 1.2e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323198_3 865 LQTKLSLPVASTGQNCPQVSLSRANS 890 678899*****************976 PP == domain 20 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323198_3 892 LPVASAGQNRPQVSLFTPSSCL 913 8********************9 PP == domain 21 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323198_3 915 VASAGAKLPQVGLSRPS 931 8***************7 PP == domain 22 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323198_3 930 PSLLLPEGMYRPSLCLTADSPCPALP 955 678999************99999987 PP == domain 23 score: 8.4 bits; conditional E-value: 0.00014 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323198_3 965 APAFRQLVR-AQLLPHGGLFSPNSCLL 990 9*****555.***************95 PP == domain 24 score: 6.4 bits; conditional E-value: 0.00056 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323198_3 996 SAPASHWPLE-AQLMP 1010 6********9.99887 PP == domain 25 score: 22.2 bits; conditional E-value: 6.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323198_3 1015 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1063 8***********.***************99876666667899*******9 PP == domain 26 score: 8.3 bits; conditional E-value: 0.00014 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323198_3 1055 SLCGPSSCLPVASVGQAR 1072 5667***********986 PP == domain 27 score: 24.9 bits; conditional E-value: 9.7e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323198_3 1069 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 1126 678888888888888888852.44311567899*************************9 PP == domain 28 score: 27.4 bits; conditional E-value: 1.6e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323198_3 1117 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1147 79***************************87 PP == domain 29 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323198_3 1134 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1167 66899**************************975 PP == domain 30 score: 2.7 bits; conditional E-value: 0.0082 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323198_3 1156 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1201 57899***9637*********9989888888888888888888765 PP == domain 31 score: 1.6 bits; conditional E-value: 0.018 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323198_3 1186 PGLLPPEGLHRPSLSLTADSPRPAS 1210 6689999999999999998877655 PP == domain 32 score: 7.3 bits; conditional E-value: 0.00029 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gl p+ + +s++ + pp++Ls Pss+ T323198_3 1230 GPAPACQWPLQAhgahssqrpfqAQFFPSGGLCGPR---TSSSRPLQThlqPPGVLSGPSSS 1288 9*************9998765554444444444443...23444444488888999999886 PP == domain 33 score: 0.8 bits; conditional E-value: 0.033 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323198_3 1292 RLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 1356 45556666666666666666666666667777775577779********************5543 PP == domain 34 score: 33.2 bits; conditional E-value: 2.5e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323198_3 1389 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1420 589****************************9 PP == domain 35 score: 17.8 bits; conditional E-value: 1.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323198_3 1425 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1486 8***********.************************99*99999999999***********8 PP == domain 36 score: -9.2 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpv.AsaGpk 37 pAP + r L p++ ++ s p ++ p+ ++++p+ T323198_3 1515 PAPPMLRELS-PPRRPPGAKSLPASRQPAcSPVPPS 1549 7888888888.7777777777665544430444555 PP == domain 37 score: -1.7 bits; conditional E-value: 0.2 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323198_3 1569 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 1617 7788866657777787888888999999999843777777777776555 PP == domain 38 score: -2.4 bits; conditional E-value: 0.33 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323198_3 1635 CLAPAPPTLREVGVS 1649 579999999999865 PP == domain 39 score: -3.4 bits; conditional E-value: 0.67 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323198_3 1761 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 1790 788888666667776666666666666554 PP == domain 40 score: -2.0 bits; conditional E-value: 0.24 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323198_3 1903 EATVGPADalllPELGLYRP 1922 58888876667799999999 PP == domain 41 score: -0.3 bits; conditional E-value: 0.072 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323198_3 1990 SRRPLRAQLFLPAASLGPTPaS 2011 6777788888888888887752 PP == domain 42 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323198_3 2038 PGPGQASRWPRQ-AQLLPSDGISRS 2061 9***********.********9985 PP == domain 43 score: 12.5 bits; conditional E-value: 7.2e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323198_3 2072 GPAWASRRPLQA-Q 2084 9**********4.4 PP == domain 44 score: 13.0 bits; conditional E-value: 5.2e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323198_3 2092 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 2171 9***************************************************************.***************7 PP == domain 45 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323198_3 2168 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 2213 9***********44444444444444444444444444444.....................44444 PP == domain 46 score: 14.0 bits; conditional E-value: 2.4e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323198_3 2227 LLPFGRFGRPSSCLPVASLGPAH 2249 578889***************87 PP == domain 47 score: 2.2 bits; conditional E-value: 0.012 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323198_3 2246 GPAHSSQRPFQ-APFFPSGSL 2265 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.42s 00:00:01.59 Elapsed: 00:00:00.77 # Mc/sec: 8682.80 // Query: T226946_1 [L=14793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.82u 0.59s 00:00:04.41 Elapsed: 00:00:01.07 # Mc/sec: 39551.64 // Query: T226946_2 [L=14792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.89u 0.57s 00:00:04.46 Elapsed: 00:00:01.10 # Mc/sec: 38470.36 // Query: T226946_3 [L=14792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.16u 0.56s 00:00:04.72 Elapsed: 00:00:01.12 # Mc/sec: 37449.02 // Query: T182957_1 [L=6634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.45s 00:00:02.65 Elapsed: 00:00:00.84 # Mc/sec: 22593.75 // Query: T182957_2 [L=6634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 708 (0.0434196); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.67u 0.42s 00:00:03.09 Elapsed: 00:00:01.07 # Mc/sec: 17737.15 // Query: T182957_3 [L=6633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.2 3.2e+02 1.4 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.3 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.034 5.6e+02 89 121 .. 5484 5516 .. 5480 5521 .. 0.89 4 ? 0.4 0.0 0.04 6.6e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.0 0.0 0.11 1.8e+03 94 121 .. 5577 5604 .. 5567 5609 .. 0.82 6 ? 1.1 0.0 0.025 4.1e+02 88 121 .. 5615 5648 .. 5590 5652 .. 0.86 7 ? -0.7 0.0 0.091 1.5e+03 88 121 .. 5659 5692 .. 5635 5697 .. 0.79 8 ? 1.4 0.0 0.02 3.2e+02 88 121 .. 5703 5736 .. 5677 5756 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182957_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182957_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182957_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.04 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182957_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182957_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 66677777889***************96 PP == domain 6 score: 1.1 bits; conditional E-value: 0.025 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182957_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 57788899999999******************97 PP == domain 7 score: -0.7 bits; conditional E-value: 0.091 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182957_3 5659 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5692 56666677777778889***************96 PP == domain 8 score: 1.4 bits; conditional E-value: 0.02 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182957_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:00.74 # Mc/sec: 25643.09 // Query: T338269_1 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 3735.43 // Query: T338269_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 75 (0.00459953); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.68 # Mc/sec: 3845.29 // Query: T338269_3 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 3898.41 // Query: T256128_1 [L=3712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.43s 00:00:02.23 Elapsed: 00:00:00.88 # Mc/sec: 12067.50 // Query: T256128_2 [L=3712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.61 # Mc/sec: 17408.85 // Query: T256128_3 [L=3711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.31s 00:00:01.67 Elapsed: 00:00:00.57 # Mc/sec: 18304.38 // Query: T294744_1 [L=287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.53 # Mc/sec: 1549.17 // Query: T294744_2 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-06 26.8 0.2 6.7e-06 26.3 0.2 1.2 1 Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain 0.0028 17.9 0.0 1.9 8.8 0.3 2.1 2 DUF1048 Protein of unknown function (DUF1048) ------ inclusion threshold ------ 0.06 13.2 0.3 0.091 12.6 0.3 1.2 1 tRNA_NucTran2_2 tRNA nucleotidyltransferase domain 2 putativ Domain annotation for each model (and alignments): >> Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.3 0.2 1.2e-09 6.7e-06 3 89 .. 57 143 .. 55 144 .. 0.82 Alignments for each domain: == domain 1 score: 26.3 bits; conditional E-value: 1.2e-09 SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS----....S---TT-XXX CS Myb_DNA-bind_4 3 kWseeetrlLieawgerilelrfqergkkrnkklWeevaeamaergyersakqCkdKienLkkrYkkekerekgsgs....swpffeelda 89 Ws++e+r +++ w+ le ++ + kk+ + + +++a+++++rg+++s k+C + +L+ Y +++e + ++++ +p+ e l++ T294744_2 57 PWSDQEIRSFLQEWEF--LEREVYR-VKKKYHIVSKAIAQRLKQRGINKSWKECLQMLISLQDLYFTIQEAN-QRPRcqplPCPYGEALHR 143 7*************99..5555543.567777788999999999*************************986.666444557888888876 PP >> DUF1048 Protein of unknown function (DUF1048) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.8 0.3 0.00035 1.9 8 57 .. 68 118 .. 62 127 .. 0.91 2 ! 7.0 0.0 0.0013 6.9 14 44 .. 127 157 .. 120 165 .. 0.86 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00035 HHHHHHHHHHHHS-HHHHHHHHHHHHHHCCCT.B-SHHHHHHHHHHHHHHH CS DUF1048 8 keykefeaRvkaLPedYqtvykeiqkylwkvg.ategadlleilkevldLf 57 +e+ e+ v + Y++v k+i + l + g + ++++ l++l ++ dL+ T294744_2 68 QEWEFLEREVYRVKKKYHIVSKAIAQRLKQRGiNKSWKECLQMLISLQDLY 118 68888899999999******************9999***********9997 PP == domain 2 score: 7.0 bits; conditional E-value: 0.0013 HHHHHHS-HHHHHHHHHHHHHHCCCTB-SHH CS DUF1048 14 eaRvkaLPedYqtvykeiqkylwkvgatega 44 + R + LP +Y ++ + i y wk+++++g T294744_2 127 RPRCQPLPCPYGEALHRILGYRWKISVFSGP 157 56999*********************99986 PP >> tRNA_NucTran2_2 tRNA nucleotidyltransferase domain 2 putative # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.3 1.7e-05 0.091 21 81 .. 60 123 .. 55 133 .. 0.83 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 1.7e-05 tRNA_NucTran2_2 21 eeqarsfLkswkfsnklikavtallkllekrknaeltkl...elykageealllaeelaqaqgq 81 ++++rsfL++w f +++ v++ + +++k ++l+++ + +k ++++l ++ l + ++ T294744_2 60 DQEIRSFLQEWEFLEREVYRVKKKYHIVSKAIAQRLKQRginKSWKECLQMLISLQDLYFTIQE 123 799***********************************95545599999999999988444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 424 (0.0260027); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.67 # Mc/sec: 1221.19 // Query: T294744_3 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 88 (0.00539679); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.68 # Mc/sec: 1203.23 // Query: T023321_1 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 10628.18 // Query: T023321_2 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.63 # Mc/sec: 12315.19 // Query: T023321_3 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 10775.79 // Query: T294035_1 [L=1315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.72 # Mc/sec: 5224.99 // Query: T294035_2 [L=1315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 5452.16 // Query: T294035_3 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 5528.13 // Query: T101426_1 [L=4613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.43s 00:00:02.12 Elapsed: 00:00:00.81 # Mc/sec: 16292.60 // Query: T101426_2 [L=4613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.86 # Mc/sec: 15345.36 // Query: T101426_3 [L=4612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.74 # Mc/sec: 17829.93 // Query: T241204_1 [L=216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.57 # Mc/sec: 1065.41 // Query: T241204_2 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.74 # Mc/sec: 831.19 // Query: T241204_3 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 931.94 // Query: T090316_1 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 6344.58 // Query: T090316_2 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 5955.73 // Query: T090316_3 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-32 110.7 11.3 2.6e-32 110.7 11.3 1.8 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 0.38 6.1e+03 6 21 .. 43 58 .. 40 68 .. 0.62 2 ! 110.7 11.3 1.6e-36 2.6e-32 12 89 .] 523 599 .. 519 599 .. 0.97 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.38 Colipase-like 6 kclklrklngyeCskk 21 +cl++ ++ +C T090316_3 43 RCLPFLGPLTSHCAYI 58 5677777777777544 PP == domain 2 score: 110.7 bits; conditional E-value: 1.6e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090316_3 523 QPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 599 79*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.67 # Mc/sec: 5866.84 // Query: T002762_1 [L=2995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1281 (0.07856); expected 326.1 (0.02) Passed bias filter: 497 (0.0304796); expected 326.1 (0.02) Passed Vit filter: 138 (0.00846314); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.51s 00:00:02.83 Elapsed: 00:00:00.96 # Mc/sec: 8925.19 // Query: T002762_2 [L=2994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0015 18.6 6.8 0.0043 17.1 0.8 2.2 2 DDHD DDHD domain ------ inclusion threshold ------ 0.051 13.4 12.1 0.087 12.7 12.1 1.3 1 TFIIA Transcription factor IIA, alpha/beta subunit 1.9 8.8 24.2 0.69 10.2 2.9 2.5 2 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.3 0.7 0.0062 34 132 188 .. 937 992 .. 883 1045 .. 0.59 2 ! 17.1 0.8 7.8e-07 0.0043 119 190 .. 1107 1179 .. 1083 1251 .. 0.61 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.0062 DDHD 132 aklaesqksherssesskesqeskaaesssasssak.sssaeekveledkeleeeaee 188 ++l+++ k+ r++ +++ ++e +++ ++++ ++ k + ++e+k+e ++ e ++e+++ T002762_2 937 ETLSQKGKKG-RKEGRKEGRKEGREEGRKERRKKGKkERKKERKKERKK-ERKKERKK 992 2222222222.22222222222111111111111110111111111111.11111111 PP == domain 2 score: 17.1 bits; conditional E-value: 7.8e-07 DDHD 119 llnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeekk 190 ++++ + +eee+++++e+++++e+++e+++e++e++++e++++++++++++ ++ + ++ke+ee ++++++ T002762_2 1107 TWQNYIEEQEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGRRRRRRRRKEEEEeQQQQQQ 1179 3444444344444444444444444444444444433334444333443344443333333333332333332 PP >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 12.1 1.6e-05 0.087 241 369 .. 933 1155 .. 917 1161 .. 0.54 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.6e-05 TFIIA 241 sqtdgaedaleeespvlegelsaeeeagaqkeelsreeidri.reealkakelekeskkkkr.aeessla............................ 308 +q+++ +++ + +g+++ ++e ++ +e +r+e ++ ++e+ k++++e+++++kk+ ++ + T002762_2 933 EQQSETL---SQKGK--KGRKEGRKEGRKEGREEGRKERRKKgKKERKKERKKERKKERKKErKK----Erkkvgvlggmltktg*nlflfkink*ik 1021 2222221...11111..122222222111111122222222212223333322222222222122....12345688899999999999999999999 PP TFIIA 309 .........dlseilqlDGagddsde.................................................................eeeeees 332 + + + + G + +s + ee+eee+ T002762_2 1022 fkkkkpgilAHTCNPSILGDQGKSRPawptt**npvstkirklaghsggcl*sqllgrlr*tnrlnpggrscrewrlrhctpawatwqnyiEEQEEEE 1119 99999988866667777777777777899999999999999999999999999999999999999999999999999999999999999884433333 PP TFIIA 333 dedsdsessddedeqveEDplNSdDDvddeddddlfd 369 +e++++e++++e+e++eE+ ++ +++e++++ ++ T002762_2 1120 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EE 1155 3333322222222222222212222222222222.12 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 2.9 0.00013 0.69 21 88 .. 936 1003 .. 830 1007 .. 0.76 2 ? 3.7 13.5 0.013 71 25 72 .. 1120 1167 .. 1097 1186 .. 0.36 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00013 RNA_pol_Rpc4 21 saaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklkslpeGviGkL 88 s++ ++k +++ ++ k+ +e++++ +++ ++ +k+ kk+ +k+ kk+++k++k+++ + Gv+G + T002762_2 936 SETLSQKGKKGRKEGRKEGRKEGREEGRKERRKKGKKERKKERKKERKKERKKERKKERKKVGVLGGM 1003 44444455555555555555555555555555555555555556666666666677777777888866 PP == domain 2 score: 3.7 bits; conditional E-value: 0.013 RNA_pol_Rpc4 25 ddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkks 72 ++++e++++++e++++eee+++e+e+++e+ee++e+++e + + ++ T002762_2 1120 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGRRRRRRRR 1167 111111111111111111111111111112212222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1670 (0.102416); expected 326.1 (0.02) Passed bias filter: 755 (0.046302); expected 326.1 (0.02) Passed Vit filter: 430 (0.0263707); expected 16.3 (0.001) Passed Fwd filter: 186 (0.0114068); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 4.67u 0.60s 00:00:05.27 Elapsed: 00:00:01.23 # Mc/sec: 6963.68 // Query: T002762_3 [L=2994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.57 9.8 4.1 1.3 8.6 4.1 1.6 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 4.1 8e-05 1.3 3 23 .. 945 965 .. 944 966 .. 0.61 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 8e-05 Yae1_N 3 reGlaeGkeqglqeGfdeGyq 23 +eG +eG+++g eG+ eG + T002762_3 945 KEGRKEGRKEGRKEGRKEGKK 965 466666666666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1513 (0.0927879); expected 326.1 (0.02) Passed bias filter: 535 (0.03281); expected 326.1 (0.02) Passed Vit filter: 289 (0.0177235); expected 16.3 (0.001) Passed Fwd filter: 109 (0.00668466); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.64u 0.61s 00:00:04.25 Elapsed: 00:00:01.06 # Mc/sec: 8080.50 // Query: T353408_1 [L=933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 3925.23 // Query: T353408_2 [L=933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.9 10.0 7.3 51 4.4 1.2 4.3 2 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 1.2 0.0031 51 5 51 .. 494 545 .. 436 568 .. 0.71 2 ? 3.6 1.7 0.0057 94 5 69 .. 593 658 .. 553 677 .. 0.60 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.0031 CTD 5 PawnsaggsrTPawgadgsrTpayggagsrtPay.nag.akTPawd...aag 51 Paw++ g++r P ++g r + + + ++ Pa+ g ++ P + g T353408_2 494 PAWQRRGQQRVPCGREEGGRGSCVAERVAEGPAWqRRGrQRVPRGRgegGRG 545 7777777777777777777777777777777888444545566655444444 PP == domain 2 score: 3.6 bits; conditional E-value: 0.0057 CTD 5 PawnsaggsrTPawgadgsrTpaygga.gsrtPaynag.akTPawdaagsrTPayktawdgsrTpay 69 Paw++ g +r P +g r + + ++ ++ Pa++ g ++ P ++gsr ++ +++ pa+ T353408_2 593 PAWQRRGRQRVPRGRGEGGRGSRVAEKrAAEGPAWQRGwQRVPRGREEGSRGSCVAEKR-AAEGPAW 658 44444444444444444444444444445555666555555555555555544443332.4445555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 4044.17 // Query: T353408_3 [L=933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 4601.99 // Query: T106638_1 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 2825.07 // Query: T106638_2 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 2739.46 // Query: T106638_3 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-22 77.9 2.8 7.1e-22 77.9 2.8 3.4 3 ADAM_CR ADAM cysteine-rich 3.2e-09 37.3 10.1 3.2e-09 37.3 10.1 3.3 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.9 2.8 8.7e-26 7.1e-22 1 109 [. 279 395 .. 279 399 .. 0.86 2 ? 2.6 2.9 0.02 1.6e+02 1 19 [. 403 422 .. 403 428 .. 0.90 3 ? -4.6 5.6 2 1.6e+04 4 27 .. 427 450 .. 425 457 .. 0.61 Alignments for each domain: == domain 1 score: 77.9 bits; conditional E-value: 8.7e-26 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatviqt 92 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ + T106638_3 279 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNILVH 377 9**************************************999975.4699****98444355699********************955345555999999 PP ADAM_CR 93 kiknkeCvgidvh.eedv 109 +ik+++C+g+++h ++d T106638_3 378 DIKEEKCFGYEAHqGTDL 395 9999*******9745555 PP == domain 2 score: 2.6 bits; conditional E-value: 0.02 ADAM_CR 1 dgtpCke.ayCykgkCktrd 19 dg +C +yC+k +C++++ T106638_3 403 DGATCGPgSYCLKHNCTSYQ 422 899**999*********987 PP == domain 3 score: -4.6 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106638_3 427 ECDLKTCnYKGVCNNK-KHCHCLHG 450 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 10.1 3.9e-13 3.2e-09 17 76 .] 222 274 .. 212 274 .. 0.82 2 ? -1.1 1.2 0.38 3.1e+03 33 52 .. 283 301 .. 277 320 .. 0.51 3 ? 1.2 8.5 0.073 6e+02 29 71 .. 403 444 .. 380 450 .. 0.76 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 3.9e-13 Disintegrin 17 dkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 +CC+ + C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106638_3 222 ARCCH-----PLGFSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 274 44555.....344579*9******.7************6.556***************97 PP == domain 2 score: -1.1 bits; conditional E-value: 0.38 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106638_3 283 CSAvSVCIRGNCS--DRDMQC 301 3322333333332..222222 PP == domain 3 score: 1.2 bits; conditional E-value: 0.073 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106638_3 403 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 444 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 466 (0.0285784); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.74 # Mc/sec: 2443.30 // Query: T012550_1 [L=4789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.44s 00:00:02.12 Elapsed: 00:00:00.82 # Mc/sec: 16707.94 // Query: T012550_2 [L=4789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.44s 00:00:02.26 Elapsed: 00:00:00.89 # Mc/sec: 15393.84 // Query: T012550_3 [L=4789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.44s 00:00:02.06 Elapsed: 00:00:00.92 # Mc/sec: 14891.86 // Query: T110426_1 [L=2784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-08 34.2 0.8 3e-08 32.9 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 0.8 1.9e-12 3e-08 1 19 [] 2687 2705 .. 2687 2705 .. 0.98 Alignments for each domain: == domain 1 score: 32.9 bits; conditional E-value: 1.9e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T110426_1 2687 SFAGTWMKLETIILSKLTQ 2705 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.79 # Mc/sec: 10081.71 // Query: T110426_2 [L=2784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.86 # Mc/sec: 9261.11 // Query: T110426_3 [L=2784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 605 (0.0371029); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.39s 00:00:01.71 Elapsed: 00:00:00.77 # Mc/sec: 10343.57 // Query: T236097_1 [L=525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 2310.67 // Query: T236097_2 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.52 # Mc/sec: 2882.84 // Query: T236097_3 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 2540.80 // Query: T000076_1 [L=257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 1361.54 // Query: T000076_2 [L=257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 1289.88 // Query: T000076_3 [L=257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-07 30.7 0.0 3.6e-07 30.0 0.0 1.3 1 GTF2I GTF2I-like repeat Domain annotation for each model (and alignments): >> GTF2I GTF2I-like repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.0 0.0 2.2e-11 3.6e-07 13 48 .. 30 65 .. 25 66 .. 0.94 Alignments for each domain: == domain 1 score: 30.0 bits; conditional E-value: 2.2e-11 GTF2I 13 ygeAlglsepvkvpYeklqkdpealvveGLPegvsf 48 ++A++++ pv++pY +q++ e+++veGLP+g+ f T000076_3 30 SARAVKAKGPVMIPYPFFQSHVEDFYVEGLPKGIFF 65 579*******************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1205.30 // Query: T099174_1 [L=3220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.32s 00:00:01.64 Elapsed: 00:00:00.68 # Mc/sec: 13546.87 // Query: T099174_2 [L=3220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.45s 00:00:01.82 Elapsed: 00:00:00.76 # Mc/sec: 12120.89 // Query: T099174_3 [L=3219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0003 20.7 2.8 0.0024 17.8 0.6 2.4 2 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.6 1.5e-07 0.0024 12 98 .. 764 850 .. 760 852 .. 0.91 2 ! 7.6 0.8 0.00021 3.5 36 98 .. 821 883 .. 819 890 .. 0.73 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.5e-07 Mucin-like 12 spsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s ss+ g+ + + ss+y++ + + ss+yg++p + s+ ++ s++y+ + + s++yg++p + s+ +p + s++y++ p T099174_3 764 SLSSDNGWAPCPVSSDYGQAPCPVSSDYGQAPCPVFSDGRWASCPVSNDYGRALCPVSNDYGQAPCPVFSDGRWAPCPVSNDYGQAP 850 5689999999999999**********************99999999*******9999*********9999999999999****9976 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00021 Mucin-like 36 sssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s++yg++p + s+ ++ s++y+++p + s+ +p + s++y+ +p + s++y++ p T099174_3 821 SNDYGQAPCPVFSDGRWAPCPVSNDYGQAPCPVFSDGRWAPCPVSNDYGRAPCPVSNDYGQAP 883 678888888888888888888888888888877777776777777777777777777777654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 13155.73 // Query: T040667_1 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 1884.20 // Query: T040667_2 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 1707.56 // Query: T040667_3 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 1631.10 // Query: T227171_1 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.77 # Mc/sec: 5513.60 // Query: T227171_2 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:00.74 # Mc/sec: 5737.12 // Query: T227171_3 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 6152.86 // Query: T338205_1 [L=3589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-28 97.6 0.1 5e-28 96.5 0.1 1.7 1 RVT_thumb Reverse transcriptase thumb domain 1.7e-23 83.2 0.0 2.3e-23 82.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 3.7e-14 52.9 0.3 7.2e-14 52.0 0.3 1.3 1 GP41 Retroviral envelope protein 8e-07 28.7 0.2 1.8e-06 27.5 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.5 0.1 1.2e-31 5e-28 1 65 [. 993 1057 .. 993 1058 .. 0.97 Alignments for each domain: == domain 1 score: 96.5 bits; conditional E-value: 1.2e-31 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 pqk+q+rrd lktLNDfQkLlg+IN +rp+lgi+t++L++LF++LrGdsdl spr+LT+eA L T338205_1 993 PQKVQIRRDSLKTLNDFQKLLGNINYLRPTLGIPTYTLSNLFSMLRGDSDLRSPRTLTPEALLDL 1057 6************************************************************8877 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.8 0.0 5.7e-27 2.3e-23 78 221 .. 866 985 .. 865 986 .. 0.96 Alignments for each domain: == domain 1 score: 82.8 bits; conditional E-value: 5.7e-27 CGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-.T......TEEECTTEEEEEESS CS RVT_1 78 kaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrel.rkrakgvtllrYaDDililsks 176 ++F+++ l++ + +++af+vp ++n++e+ ry++k+lpqG+ +SP++++l++ ++l ++ ++ +++ ++l+Y+DDili++ + T338205_1 866 GFFFHIALHKSDCEKFAFTVP------------------SINNQEPVARYQWKVLPQGMLNSPTICQLYVGQVLSPV*AR-FPEAYILHYIDDILISAPT 946 79*******************..................45999********************************9986.689**************** PP HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 177 keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 ++l +++++ +++ e+gl+i+++K++ + ++v+yLG+ T338205_1 947 DKKLIDCYQILNRCVTEAGLRIAQDKIQQT------TPVQYLGMV 985 ******************************......8******86 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.0 0.3 1.8e-17 7.2e-14 2 80 .. 1809 1887 .. 1806 1894 .. 0.95 Alignments for each domain: == domain 1 score: 52.0 bits; conditional E-value: 1.8e-17 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXX CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpy 80 a + l q++q+a++vn+ + n ++ + Q++id+kl ++n l + v+ lG++v sl+++++++C n C+T++p T338205_1 1809 AGMELHQSIQTAHFVNDWQANSTQMWNSQQDIDQKLAKQINDLRQSVIWLGDQVVSLEHRMQMQCDWNTLDFCITPIPI 1887 556799***********************************************************9999999****996 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.2 4.5e-10 1.8e-06 20 79 .. 423 481 .. 420 486 .. 0.92 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 4.5e-10 Gag_p10 20 vsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwkli 79 v ++++++++ ve++c WFpe+Gt+ ++ + v+k + + g +p++v+ w + T338205_1 423 VTMKNMITLFRAVEKYCSWFPEKGTVYIKLCDCVRKAFR-KLISAGYYVPITVWGAWCVT 481 6678999********************************.89999************875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:00.71 # Mc/sec: 14461.29 // Query: T338205_2 [L=3588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-09 36.2 0.2 6.8e-09 35.8 0.2 1.1 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 3.8e-06 26.0 0.0 8.3e-06 24.9 0.0 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.8 0.2 8.3e-13 6.8e-09 5 129 .. 633 754 .. 633 756 .. 0.88 Alignments for each domain: == domain 1 score: 35.8 bits; conditional E-value: 8.3e-13 Gag_p24 5 kalkkaveqygpsspeviqlidalaeqa..lpkdlekllarvgssqlaaqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleq 102 k++k a+ qygp+ p+v +++ + + lp + +lla+++s+ +w ee + ++ nr + +i i++ +l g ++ + ql++ + +q T338205_2 633 KQFKDACTQYGPTFPYVQMVLQTFYTEVvlLP-LDCDLLAKSCSK-SISAWWSEEACLQ--AQLNRSN-GILITQAQLTGSDSFSDAYAQLNFDTLTTKQ 727 67899*******************99998555.556788889995.5567888888888..8999999.67777778*****************99**** PP Gag_p24 103 vrrlillalekiprsgsktesladirQ 129 v++++++a+ k+ + ++ s+ +++Q T338205_2 728 VTKVCMRAWDKLHSRAQALVSFTTVKQ 754 **************************9 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 1e-09 8.3e-06 22 48 .. 1258 1284 .. 1256 1286 .. 0.94 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 1e-09 EEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 22 LikgrGavcvFPqdasdikwvPeRlvr 48 L++grG++cv P d ++++wvP R ++ T338205_2 1258 LTWGRGYACVSPGDHQSPVWVPTRRLK 1284 9***********************988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.42s 00:00:01.75 Elapsed: 00:00:00.72 # Mc/sec: 14256.47 // Query: T338205_3 [L=3588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-35 121.2 0.0 6.5e-35 120.2 0.0 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 7.8e-05 22.8 0.0 0.00012 22.1 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.2 0.0 7.9e-39 6.5e-35 2 153 .. 1424 1572 .. 1423 1581 .. 0.87 Alignments for each domain: == domain 1 score: 120.2 bits; conditional E-value: 7.9e-39 HERV-K_env_2 2 vtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqn..wlvevptvspisrftyhmvsgmslrprvny 94 +t +d p e+y ndsvw+pg idd cpa+p eeg n+++gy+ypp+clg+apgc+ w + s ++ h+ sg+sl p ++ T338205_3 1424 LTRIDAPAEIYTNDSVWMPGAIDDPCPAQPGEEGTAFNVTMGYKYPPLCLGHAPGCIHLE--T*fWAAYLSETSATDKM-GHLASGLSLSPLQQM 1515 6889****************************************************9754..23265555556665554.599********9888 PP HERV-K_env_2 95 lqdf.syqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwap 153 + ++++p gkpcpk sk l+we+cv avil+n+ +g +idwap T338205_3 1516 KGGVmGGTPYFQYKPAGKPCPKHFEGPSK---TLIWEDCVNSHAVILKNDSYGLVIDWAP 1572 76651556789*************99988...59*************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.0 1.5e-08 0.00012 2 70 .. 1200 1256 .. 1199 1257 .. 0.87 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 1.5e-08 .SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES- CS RNase_H 2 kavvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDS 70 +av+v+tDGs g+g ag++ + + + +s+++ ++ + aEL+Avi+aL++ ++ +ni++ S T338205_3 1200 EAVTVFTDGS-----GNGNAGYTGPAD--KLLSTSY---TSLQNAELIAVITALQD--FPKPLNIVSYS 1256 79********.....6699***99988..7777777...5***************9..99999999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.32u 0.42s 00:00:01.74 Elapsed: 00:00:00.78 # Mc/sec: 13159.82 // Query: T176526_1 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:00.80 # Mc/sec: 8131.91 // Query: T176526_2 [L=2273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-06 26.5 2.6 1.4e-05 24.8 2.6 2.0 1 zf-CCHC Zinc knuckle 0.0015 18.6 0.0 0.003 17.7 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.01 15.2 0.0 0.019 14.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 2.6 2.5e-09 1.4e-05 2 18 .] 1162 1178 .. 1161 1178 .. 0.94 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 2.5e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C + GH+a++Cp+ T176526_2 1162 ACYTCRKSGHWAKECPQ 1178 7***************7 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 5.6e-07 0.003 7 89 .. 1248 1325 .. 1248 1325 .. 0.85 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 5.6e-07 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 +++ ++gk i +l+ t A+++ ++ + P + a+ ++ Gi + ++ ++ ++ +l + f++ s+l++p++pv+llG T176526_2 1248 VTLTVEGKSIPFLINTEATHSTLPSFQGPVS----LASITVVGIDSQASKPLKTPQLWrQLRHYSFKH--SFLVIPTCPVPLLG 1325 57899**************************....*********999977666665440455555666..************99 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 3.5e-06 0.019 65 141 .. 1476 1533 .. 1438 1542 .. 0.81 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.5e-06 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE.ET.........................TEEEEESB--ST-TTHHH CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafk.vptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPl 141 + ++++ lD k+aF++vpl+ + +l+af+ +++ + ++ ++++lpqG++ SP T176526_2 1476 PSSTTHYSVLDRKDAFFTVPLHPSSPPLFAFT*TDPD-------------------TH-QAQQITWAVLPQGFTDSPH 1533 34559**************************998866...................33.4899*************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 11211.49 // Query: T176526_3 [L=2273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0016 17.8 0.0 0.0026 17.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 1.6e-07 0.0026 138 181 .. 1049 1092 .. 1042 1094 .. 0.95 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.6e-07 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl+ + rr+ dp+ + + + + fi+qsa+di+ T176526_3 1049 KNPAQFMARLTATLRRFIALDPKRSKGHLILNIHFITQSAPDIK 1092 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 9289.52 // Query: T226525_1 [L=6199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-13 48.1 0.0 1.4e-12 47.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 9e-09 35.5 0.4 1.6e-08 34.7 0.4 1.4 1 RNase_H RNase H ------ inclusion threshold ------ 0.029 14.4 0.1 0.058 13.5 0.1 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.5 0.0 2.5e-16 1.4e-12 121 210 .. 3875 3964 .. 3870 3965 .. 0.95 Alignments for each domain: == domain 1 score: 47.5 bits; conditional E-value: 2.5e-16 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +p n kvkev++gk+e+pa f l+ea r+yt p++pe +a + + f+ qs++dir+ lq+ + +k ++ a kvyn r+ T226525_1 3875 VKPVNYDKVKEVTRGKDENPALFQGLLVEALRKYTNAGPDTPEGQALLGIHFLIQSSPDIRRNLQKAAMGPSSPMKRRLNIAFKVYNNRD 3964 68****************************************************************999999999999999999999986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.7 0.4 3e-12 1.6e-08 3 131 .. 1276 1406 .. 1274 1415 .. 0.84 Alignments for each domain: == domain 1 score: 34.7 bits; conditional E-value: 3e-12 SEEEEEEEE..EECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEE.EEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 3 avvvYtDGs..clgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvn.iytDSkYvvkgitqwvhrwkknawkttseqk 96 +++tDGs + g++++ +a+a+ + r + +e ++ + aEL Av+ +++ a k++ + +ytDS v +g+ +wkk++wk +++ T226525_1 1276 TRTWFTDGSa*YAGTTRKWTAAALQPLS--RASMKDSSEGKSSQWAELRAVHLVVHfAWKEKWPAV*LYTDSWAVANGLAGSSGNWKKHDWKIGDKE- 1370 569******5558888888888887755..6444555569****************9989999999*************************666555. PP BHTTHHHHHHHHHCHCSSEEEEEE-SCC.SSS.CHHH CS RNase_H 97 pvknkelaellkelakkkkvqlkhvkgH.aGd.pkgN 131 + + ++ l+e k +k+ ++hv +H G p++N T226525_1 1371 -IWGRGMWMDLSEWSKIVKIFVSHVSAHqRGTsPEEN 1406 .9999***********************656554444 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 1.1e-05 0.058 9 82 .. 1498 1568 .. 1498 1583 .. 0.80 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.1e-05 rve 9 qvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytska 82 qvD+ +++ +++g+ ++ + id++s++ +a++ + +a+t+i+ + + + +++g p + sD+ + + +k+ T226525_1 1498 QVDYIgTLP--SWKGQRFVPTGIDTYSGYGFAYPAHNA-SAKTTIRGFTEYIIHRHGI-PHSIASDQDTHFMAKE 1568 567774555..777789*********************.6666666666666677776.*********9999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.29u 0.49s 00:00:02.78 Elapsed: 00:00:00.91 # Mc/sec: 19488.23 // Query: T226525_2 [L=6199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.2 0.0 0.032 13.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2e-06 0.032 168 221 .. 984 1032 .. 968 1033 .. 0.98 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2e-06 TEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 168 DDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 DDi+++ +s++e+ + l+ ++++l + +in++K++ s++vk+LGv+ T226525_2 984 DDIMLIGSSEQEVANTLDLLVRHLCARRWEINMTKIQGP-----STSVKFLGVQ 1032 ***************************************.....9*******96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.74 # Mc/sec: 23965.25 // Query: T226525_3 [L=6198] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6198 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.43s 00:00:02.47 Elapsed: 00:00:00.94 # Mc/sec: 18863.22 // Query: T379145_1 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-20 73.4 0.0 2.4e-20 72.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.011 16.3 0.0 0.02 15.4 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.025 15.0 0.0 0.043 14.2 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.029 14.0 16.9 0.22 11.1 6.3 2.5 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.042 13.8 12.8 0.052 13.5 6.1 2.9 2 zf-CCHC Zinc knuckle 0.11 12.7 0.0 0.2 11.8 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.8 0.0 9e-24 2.4e-20 86 199 .. 179 293 .. 163 302 .. 0.86 Alignments for each domain: == domain 1 score: 72.8 bits; conditional E-value: 9e-24 Gag_p30 86 afpltrpdwdyetaegresl.klyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkkl 184 a p + p w+y++ + + l+ gl+ aa + n k+ke +qgk+e+pa f+ rl + r +t dpe pe + + + fi+qsasdirkkl T379145_1 179 AVPQEDPRWEYQAGSPGIAR*DYMISCLVEGLKRAAYKAVNYDKIKETTQGKDENPAQFMARLAATLRCFTALDPEGPEGHLILDMHFITQSASDIRKKL 278 6788889999986543332232455789************************************************************************ PP Gag_p30 185 qrleglqeatlkdlv 199 q+le +++l+ l T379145_1 279 QKLESTPQQELTSLA 293 *****9999998875 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.0 7.5e-06 0.02 1 24 [. 440 463 .. 440 464 .. 0.92 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 7.5e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlis 24 v++t++Gk + fl+DTGa++++++ T379145_1 440 VTLTVEGKSIPFLIDTGATHSTLP 463 6789****************9986 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 1.6e-05 0.043 1 24 [. 440 463 .. 440 465 .. 0.92 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.6e-05 EEEEETTEEEEEEEETT-SS-EEE CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiis 24 v++t++gk++ fl+DTGA++++++ T379145_1 440 VTLTVEGKSIPFLIDTGATHSTLP 463 6789****************9987 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 6.3 8.1e-05 0.22 1 18 [. 348 365 .. 348 367 .. 0.94 2 ? 8.1 2.8 0.00072 1.9 1 18 [. 371 387 .. 371 389 .. 0.88 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 8.1e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T379145_1 348 PSGSCCKCQKSGHWAKEC 365 7999************** PP == domain 2 score: 8.1 bits; conditional E-value: 0.00072 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 pp Cp C g+Hw++dC T379145_1 371 PPKPCPICA-GTHWKSDC 387 67779***6.******** PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 6.1 1.9e-05 0.052 2 18 .] 351 367 .. 350 367 .. 0.90 2 ? 3.4 0.5 0.029 80 11 17 .. 382 388 .. 382 389 .. 0.95 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.9e-05 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 C +C++ GH+a++C++ T379145_1 351 SCCKCQKSGHWAKECSQ 367 588************86 PP == domain 2 score: 3.4 bits; conditional E-value: 0.029 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T379145_1 382 HWKSDCP 388 ******9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 7.4e-05 0.2 6 30 .. 439 463 .. 434 469 .. 0.88 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 7.4e-05 EEEEEETTEEEEEEE-TTBSSEEEE CS RVP 6 llkvkiggkyieallDtGAdatvis 30 ++++ ++gk i +l+DtGA+++ ++ T379145_1 439 RVTLTVEGKSIPFLIDTGATHSTLP 463 689999***************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 4096.55 // Query: T379145_2 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.73 # Mc/sec: 4040.43 // Query: T379145_3 [L=1030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 4397.99 // Query: T136784_1 [L=351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1946 (0.119343); expected 326.1 (0.02) Passed bias filter: 710 (0.0435423); expected 326.1 (0.02) Passed Vit filter: 644 (0.0394947); expected 16.3 (0.001) Passed Fwd filter: 69 (0.00423157); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.42s 00:00:02.27 Elapsed: 00:00:00.79 # Mc/sec: 1271.08 // Query: T136784_2 [L=351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 66 (0.00404759); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.71 # Mc/sec: 1414.30 // Query: T136784_3 [L=350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.43s 00:00:01.73 Elapsed: 00:00:00.86 # Mc/sec: 1164.29 // Query: T210941_1 [L=1180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.71 # Mc/sec: 4754.62 // Query: T210941_2 [L=1180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.78 # Mc/sec: 4327.92 // Query: T210941_3 [L=1179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.38s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 4750.59 // Query: T276715_1 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.66 # Mc/sec: 6432.53 // Query: T276715_2 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 6629.08 // Query: T276715_3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.76 # Mc/sec: 5582.38 // Query: T152558_1 [L=4802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.45s 00:00:02.15 Elapsed: 00:00:00.85 # Mc/sec: 16162.01 // Query: T152558_2 [L=4802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.84 # Mc/sec: 16354.41 // Query: T152558_3 [L=4801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.41s 00:00:02.06 Elapsed: 00:00:00.78 # Mc/sec: 17608.78 // Query: T166432_1 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5357.13 // Query: T166432_2 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.74 # Mc/sec: 4488.41 // Query: T166432_3 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.76 # Mc/sec: 4370.29 // Query: T068141_1 [L=2463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:00.80 # Mc/sec: 8807.78 // Query: T068141_2 [L=2463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 28.8 0.0 2e-06 27.9 0.0 1.5 1 RVP Retroviral aspartyl protease 0.0068 15.8 0.0 0.011 15.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.0 2.4e-10 2e-06 8 100 .. 638 725 .. 637 726 .. 0.77 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 2.4e-10 EEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 8 kvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++ ++ k i +l+ t A+++ ++ + P + a+ + i +t + + + +l ++ f + s+l+++++pv+llGrd+L+kl + L T068141_2 638 TLTVECKSIPFLINTEATHSTLPSFQRPVS----LASITAVRIDSQTsKPLKTPQLWCQLRQHSFMH--SFLVISTCPVPLLGRDILTKLSASL 725 7889999***********************....555555556666624444444445555555555..*********************9988 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 1.4e-06 0.011 137 181 .. 438 482 .. 432 482 .. 0.95 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.4e-06 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ r + r +t dp+ + + + + fi+qsa+di+ T068141_2 438 YKTPAEFMARSAATLRSFTALDPKRSKGHLILNIHFITQSAPDIK 482 579****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.84 # Mc/sec: 8388.36 // Query: T068141_3 [L=2462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.78 # Mc/sec: 9029.95 // Query: T018518_1 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.76 # Mc/sec: 5503.33 // Query: T018518_2 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 6242.59 // Query: T018518_3 [L=1461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 6332.84 // Query: T090232_1 [L=3678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 876 (0.0537226); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 92 (0.00564209); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.53u 0.46s 00:00:02.99 Elapsed: 00:00:00.87 # Mc/sec: 12094.41 // Query: T090232_2 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 645 (0.039556); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.47s 00:00:02.33 Elapsed: 00:00:00.86 # Mc/sec: 12231.71 // Query: T090232_3 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.35s 00:00:01.67 Elapsed: 00:00:00.66 # Mc/sec: 15938.29 // Query: T051154_1 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 589 (0.0361217); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 5774.48 // Query: T051154_2 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.78 # Mc/sec: 4812.06 // Query: T051154_3 [L=1311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 556 (0.0340979); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.62 # Mc/sec: 6049.27 // Query: T148452_1 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 7211.26 // Query: T148452_2 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7211.26 // Query: T148452_3 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 7089.04 // Query: T164639_1 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 6890.24 // Query: T164639_2 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 7132.00 // Query: T164639_3 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 83 (0.00509015); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 7009.03 // Query: T364941_1 [L=1063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 5335.20 // Query: T364941_2 [L=1063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 5243.21 // Query: T364941_3 [L=1062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5425.36 // Query: T173537_1 [L=3616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 16420.26 // Query: T173537_2 [L=3616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 16420.26 // Query: T173537_3 [L=3615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.65 # Mc/sec: 15910.62 // Query: T305694_1 [L=2646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 485 (0.0297437); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.64 # Mc/sec: 11827.74 // Query: T305694_2 [L=2646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.66 # Mc/sec: 11469.33 // Query: T305694_3 [L=2645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1105 (0.0677665); expected 326.1 (0.02) Passed bias filter: 416 (0.0255121); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.53u 0.42s 00:00:02.95 Elapsed: 00:00:00.83 # Mc/sec: 9116.74 // Query: T000145_1 [L=3028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 13327.07 // Query: T000145_2 [L=3028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.63 # Mc/sec: 13750.15 // Query: T000145_3 [L=3027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 13120.81 // Query: T297831_1 [L=6368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.72 # Mc/sec: 25302.45 // Query: T297831_2 [L=6367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.35s 00:00:01.89 Elapsed: 00:00:00.71 # Mc/sec: 25654.80 // Query: T297831_3 [L=6367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00033 20.1 0.0 0.00055 19.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0091 15.4 0.0 0.018 14.4 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 6.7e-08 0.00055 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 6.7e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297831_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 2.2e-06 0.018 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.2e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297831_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.89u 0.43s 00:00:02.31 Elapsed: 00:00:00.88 # Mc/sec: 20698.76 // Query: T263099_1 [L=1064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 4411.48 // Query: T263099_2 [L=1064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.69 # Mc/sec: 4411.48 // Query: T263099_3 [L=1063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-06 26.6 0.4 1.6e-05 24.2 0.3 2.1 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.3 1e-09 1.6e-05 1 19 [] 294 312 .. 294 312 .. 0.98 2 ? -0.7 0.0 0.07 1.1e+03 2 13 .. 450 461 .. 450 465 .. 0.86 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 1e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+ M+LE+IILS+ +Q T263099_3 294 SFAGTLMKLETIILSKLTQ 312 7*****************9 PP == domain 2 score: -0.7 bits; conditional E-value: 0.07 DUF1725 2 FagKWMELEnII 13 F g+W E+I+ T263099_3 450 FYGTWYNIEYIL 461 88***9999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.74 # Mc/sec: 4109.54 // Query: T089157_1 [L=5003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.44s 00:00:02.03 Elapsed: 00:00:00.79 # Mc/sec: 18117.38 // Query: T089157_2 [L=5003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-15 55.4 0.1 1.1e-14 54.7 0.1 1.3 1 RNase_H RNase H 2.5e-12 46.1 0.3 2.5e-12 46.1 0.3 1.9 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.7 0.1 1.3e-18 1.1e-14 18 142 .. 3538 3665 .. 3535 3666 .. 0.81 Alignments for each domain: == domain 1 score: 54.7 bits; conditional E-value: 1.3e-18 EEEEEE.EECTT..EEEE.EEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHC CS RNase_H 18 eggaga.vlykegarnis.apleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelak 112 +++ag+ ++++ i+ ++l++ +t ++aEL+A++ aL a ++ +vniytDS+ +++ +++ +w +++ tt+ + ++n +l+++l ++a T089157_2 3538 PAKAGYaIVSST--SIIEaTTLSPSTTSQQAELIALTRALTlA--KGLCVNIYTDSQHAFHILHHHAVMWTERGFLTTQGS-SIINSSLIKTLLKAAL 3630 568888555544..44441555599***************977..99**************9999999**99999776666.6***888877766655 PP .SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 113 .kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +k+ + h+kg + ++gN+ aD+ Akeaa T089157_2 3631 lPKEAGVLHCKGNQRAsdptAQGNTYADKTAKEAA 3665 5***********9554458889***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.1 0.3 3.1e-16 2.5e-12 464 499 .. 3899 3934 .. 3898 3942 .. 0.97 2 ? -1.3 2.0 0.07 5.7e+02 542 561 .] 3974 3993 .. 3967 3993 .. 0.89 Alignments for each domain: == domain 1 score: 46.1 bits; conditional E-value: 3.1e-16 HHHHHTGGGTSHHHHHTS--------HHHHHHHHHH CS TLV_coat 464 GLDlLfleeGGlCaALkEeCCFyadksgivrdsiak 499 GLDlL++e+GGlC L+EeCCFy ++sg+v d+i+k T089157_2 3899 GLDLLTAEKGGLCIFLNEECCFYLNQSGLVYDNIKK 3934 9*********************************97 PP == domain 2 score: -1.3 bits; conditional E-value: 0.07 XXXXXXXXXXXXXXXXXXXX CS TLV_coat 542 lLLiLllGPcilnrLvqlik 561 ++Ll+GPc++ + q+i+ T089157_2 3974 FFFLLLFGPCVFSLVSQFIQ 3993 56899************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.72u 0.44s 00:00:02.16 Elapsed: 00:00:00.87 # Mc/sec: 16451.42 // Query: T089157_3 [L=5003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-14 53.0 0.0 4.4e-14 52.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 4.3e-07 29.5 0.0 7.7e-07 28.7 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 8.7e-06 25.5 1.0 2.2e-05 24.2 1.0 1.8 1 zf-CCHC Zinc knuckle 0.00049 20.2 0.0 0.0009 19.4 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.057 13.0 2.7 0.12 12.0 2.7 1.5 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.4 0.0 1.4e-17 4.4e-14 133 210 .. 2776 2853 .. 2775 2854 .. 0.98 Alignments for each domain: == domain 1 score: 52.4 bits; conditional E-value: 1.4e-17 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089157_3 2776 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 2853 79*************************************************************************998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.7 0.0 2.4e-10 7.7e-07 3 221 .. 3184 3350 .. 3182 3351 .. 0.74 Alignments for each domain: == domain 1 score: 28.7 bits; conditional E-value: 2.4e-10 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGG.GGG-EEET CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellr.kltafkvp 98 K++ +syR++ d+ ++n++ +++ p+ + l +++ + ++++ +Dlk a ++vpl+ + l+af+ T089157_3 3184 KPD-KSYRLV----QDLCLINQIALP---------IHPVVPNPYTL-------------LFSMPPStTHYSVMDLKHASFTVPLHP-SF*ALFAFTWT 3253 666.666664....466666666666.........55555555555.............333333337778888888888888876.45556666666 PP .........................TEEEEESB--ST-TTHHHHHHHHH.HHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm.nellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 ++ + +++ ++++lpqG+ SP f+ ++ ++ll + + l+rY D+l++s s + q+ + ++l g T089157_3 3254 DS------------------DT-HQSQQLTWAVLPQGFRGSPHYFSQTLsHDLLSFCPS---ASRLIRYFHDLLLYSPSYISSQQDTLLLLQHLFTKG 3329 44..................23.349999*************99987762567777777...59***************99999999999999999** PP --BEGGG-EEE.....ESSEEETTEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvt 221 ++++p+K ++ s++++yL ++ T089157_3 3330 YHVSPSKAQIS-----SSSITYLSII 3350 ***********.....9*****9876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 1.0 6.8e-09 2.2e-05 2 17 .. 2903 2918 .. 2902 2919 .. 0.94 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 6.8e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089157_3 2903 SCFKCQKSGHWAKECP 2918 6**************9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 2.7e-07 0.0009 64 100 .. 3046 3080 .. 3027 3081 .. 0.80 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 2.7e-07 EEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 64 vllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +l+++ f + s+l++p++pv+llGrd+L+kl + L T089157_3 3046 CQLGQHSFLH--SFLVIPTCPVPLLGRDILTKLSASL 3080 4566677777..*********************9988 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 2.7 3.7e-05 0.12 1 18 [. 2900 2917 .. 2900 2918 .. 0.96 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.7e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089157_3 2900 PSGSCFKCQKSGHWAKEC 2917 7999************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.77u 0.43s 00:00:02.20 Elapsed: 00:00:00.86 # Mc/sec: 16642.71 // Query: T058480_1 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 4608.62 // Query: T058480_2 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 4154.25 // Query: T058480_3 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 4757.28 // Query: T012229_1 [L=3577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-26 91.7 16.9 1.2e-19 70.3 0.0 3.7 4 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 7.5e-10 1.2e-05 270 301 .. 372 403 .. 370 404 .. 0.94 2 ? -8.5 5.4 1 1.6e+04 54 83 .. 862 891 .. 807 903 .. 0.51 3 ! 8.6 0.7 4.2e-05 0.68 136 175 .. 1701 1739 .. 1687 1740 .. 0.83 4 ! 70.3 0.0 7.4e-24 1.2e-19 269 336 .. 1833 1900 .. 1824 1919 .. 0.90 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 7.5e-10 HHS-EEETTEEEEEEE---HHHHHHHHHHHHH CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlkarrewtdv 301 +k ++t+kG Pirl+ ++s e l++rrew d+ T012229_1 372 QKKQITYKGAPIRLAGNFSVEILQTRREWQDL 403 689**************************985 PP == domain 2 score: -8.5 bits; conditional E-value: 1 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 54 kdfykelkelieskakelealkekeentek 83 kd+ ke k + + k++ e +ke++ + +k T012229_1 862 KDMSKERKKQERKKGRKKERKKERKKERKK 891 223333333333333333333333222222 PP == domain 3 score: 8.6 bits; conditional E-value: 4.2e-05 ....XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 136 tidaslssrideleervsaaedeieeidrevkerekrkki 175 + sls+ri+++ er s + d++ e+ k +ek+ k+ T012229_1 1701 A-LVSLSNRIEQVKERNSELKDKVFELTPSNKDKEKKHKK 1739 3.369*****************************998875 PP == domain 4 score: 70.3 bits; conditional E-value: 7.4e-24 HHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEET.TTEEEEESSSSEEEESSHHH CS Transposase_22 269 rekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrlly.PaklsiiidGeikvfidktk 336 e +vt+kGkP rltad+saetl+ar w++++++lk++++qPr+ P klsii +G i+ f k+k T012229_1 1833 TEAPQVTYKGKPNRLTADFSAETLQARMGWGPIFNLLKQNNYQPRI-L*PVKLSIIYEGKIRSFSGKQK 1900 5778*****************************************8.8999***************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1219 (0.0747578); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.75u 0.40s 00:00:02.15 Elapsed: 00:00:00.81 # Mc/sec: 12633.57 // Query: T012229_2 [L=3577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-26 92.6 6.6 5.7e-25 87.8 2.1 2.6 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.02 14.4 0.3 0.045 13.3 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.2 0.00043 3.5 308 334 .. 408 434 .. 405 442 .. 0.88 2 ! 87.8 2.1 7e-29 5.7e-25 166 271 .. 1730 1834 .. 1728 1836 .. 0.95 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00043 TT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidk 334 kkf Pr+ y k+ + +Geik f d T012229_2 408 KKFYPRIAYLVKIFYKHEGEIKAFPDT 434 89**********************995 PP == domain 2 score: 87.8 bits; conditional E-value: 7e-29 HHHHHHHHHHHHHHHHHHHHHHT.TTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS CS Transposase_22 166 vkerekrkkileqslqviqdtvk.rPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk 257 +k ++k +++ eqslq++ d+vk nlr+i ++e+e e+ k lenil iieenf l ++++ +iqe++r ++ kr+s+rhi++r++k T012229_2 1730 TKTKKKSIRKYEQSLQEVLDYVK*S-NLRIISIPEEE-ENSKSLENILGGIIEENFSGLVRDLDSQIQEAQRILGKFIAKRSSPRHIVIRLSK 1820 58999*****************666.9*******966.799**************************************************** PP HHHHHHHHHHHHHH CS Transposase_22 258 vlnkdkilkavrek 271 v++k++il+av +k T012229_2 1821 VKTKERILRAVIQK 1834 **********9776 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.3 5.5e-06 0.045 9 19 .] 3225 3235 .. 3223 3235 .. 0.91 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 5.5e-06 DUF1725 9 LEnIILSEisQ 19 LE+IILSE++Q T012229_2 3225 LETIILSEVTQ 3235 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1247 (0.0764749); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.79u 0.42s 00:00:02.21 Elapsed: 00:00:00.88 # Mc/sec: 11628.62 // Query: T012229_3 [L=3576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-38 131.5 1.9 2.4e-29 102.3 0.3 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.1 7.4e-11 1.2e-06 93 187 .. 1072 1176 .. 1065 1193 .. 0.83 2 ! 102.3 0.3 1.5e-33 2.4e-29 47 208 .. 2526 2702 .. 2521 2719 .. 0.89 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 7.4e-11 G-EEET.........................TEEEEESB-.-ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH. CS RVT_1 93 tafkvptklinliksflstrsfsvrvngeesegryekkgl.pqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee. 179 ++++++ + +n+ik+++s ++s+ +n+e+ + ++ g+ + G+ lSPll n++++ l r ++++ k+v+l+++aD +l++ +++++ T012229_3 1072 KKLGTEGTYLNTIKAIYSRHTASIMLNWEKLKAFPLRFGT*K-GWLLSPLLLNIVLDVLARAIKQEKeikgiqirkKEVKLSLFADNMLLYLEKPKDs 1168 56778888899*****************98788887766666.9*********************99***************************7774 PP HHHHHHHH CS RVT_1 180 lqelleav 187 +++lle + T012229_3 1169 IKKLLELI 1176 55555443 PP == domain 2 score: 102.3 bits; conditional E-value: 1.5e-33 HH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHH CS RVT_1 47 pgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 + + ++ ++++++ + k+k+++++++D kkaFd++++++ +++l +++++ + +n+ik+++ ++++ + +nge+ + + +g++qG +lSP T012229_3 2526 TRDAGWFNIrksiNVIHHIKRIKNKNHTIISIDAKKAFDKIQHPFMIKTLSKISIQGTYLNVIKAIYDKPTADIILNGEKLKAFRLRTGTRQGYPLSP 2623 55555555566658888998889999*****************************************************99***************** PP HHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHH.TT--BEGGG-EEE.. CS RVT_1 141 llfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlke.sglkinpeKtklvlf 208 llfn++++ l r +r+ ++v+l++ aD ++i+ +++++ +lle v+e+ ++ sg++in +K+ ++l+ T012229_3 2624 LLFNIVLEVLARAIRQGKeikgiqigkEKVKLSLLADNMIIYLENPKDfSRKLLELVKEFSSKvSGYNINVHKSVALLY 2702 ****************99***************************8885788888899998889**********99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1339 (0.082117); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.73u 0.39s 00:00:02.12 Elapsed: 00:00:00.79 # Mc/sec: 12949.78 // Query: T358366_1 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-39 136.4 1.7 1.6e-39 135.9 1.7 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.9 1.7 9.7e-44 1.6e-39 2 139 .. 466 601 .. 465 608 .. 0.93 Alignments for each domain: == domain 1 score: 135.9 bits; conditional E-value: 9.7e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssks 93 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358366_1 466 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP---- 557 7****************************97765324444559*******************************.******************.... PP RBP_receptor 94 ekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358366_1 558 ---QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 601 ...9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.71 # Mc/sec: 5975.51 // Query: T358366_2 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 6428.20 // Query: T358366_3 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 5971.48 // Query: T253258_1 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 5271.56 // Query: T253258_2 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 5415.98 // Query: T253258_3 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 5990.40 // Query: T361167_1 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-27 93.1 0.2 1.5e-26 91.9 0.2 1.7 1 Transposase_1 Transposase (partial DDE domain) 0.0004 20.8 0.0 0.00073 20.0 0.0 1.5 1 HTH_32 Homeodomain-like domain 0.0031 17.6 0.0 0.005 16.9 0.0 1.3 1 HTH_Tnp_Tc3_2 Transposase 0.0057 16.1 0.0 0.01 15.3 0.0 1.4 1 HTH_24 Winged helix-turn-helix DNA-binding 0.0068 16.0 0.1 0.37 10.5 0.0 2.4 2 HTH_23 Homeodomain-like domain ------ inclusion threshold ------ 0.016 15.0 0.1 0.038 13.8 0.1 1.6 1 HTH_11 HTH domain 0.017 15.1 0.0 2.3 8.3 0.0 2.4 2 HTH_28 Helix-turn-helix domain 0.023 14.4 0.0 0.045 13.5 0.0 1.4 1 MarR_2 MarR family 0.028 14.1 0.1 0.055 13.1 0.1 1.4 1 DDE_3 DDE superfamily endonuclease 0.078 13.0 0.0 0.15 12.1 0.0 1.5 1 HTH_17 Helix-turn-helix domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.9 0.2 9.1e-30 1.5e-26 7 80 .] 168 240 .. 168 240 .. 0.95 Alignments for each domain: == domain 1 score: 91.9 bits; conditional E-value: 9.1e-30 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqq.ldklrqklqekrpalvnr 80 + aqWld++ +pk++pkp+lhq+kvm+tVwWsa+gli+y+fl+pget+tse+Ya q +d+++qklq++ alvnr T361167_1 168 QPAQWLDQE-APKHFPKPNLHQNKVMVTVWWSAAGLIHYNFLNPGETLTSEKYA-Q*IDEMHQKLQHLPLALVNR 240 579**9986.68*****************************************8.999***************97 PP >> HTH_32 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 4.5e-07 0.00073 1 73 [] 46 108 .. 46 108 .. 0.84 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 4.5e-07 HTH_32 1 TvsrwlkRyneeGlegLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 Tv+ w k++ G e L+d++++g p+ ++ ++++a+++ +p ++ ++a++l + hstv r L T361167_1 46 TVQWWFKKFH-KGEESLEDEEHSGQPSEVD---SDQLRAIIEADPLITTPEVAEEL------NIDHSTVVRHL 108 99*******6.789************6555...555555564569***********......8******9976 PP >> HTH_Tnp_Tc3_2 Transposase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.0 3.1e-06 0.005 2 65 .. 76 135 .. 75 139 .. 0.93 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 3.1e-06 HTH_Tnp_Tc3_2 2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLrkaglkkrkprkkp.lLskknrkaRLe 65 +++ ++++dP it e+a+el ++ ++T+ r L+++g k +++p +Ls+k++ +R+e T361167_1 76 DQLRAIIEADPLITTPEVAEEL-----NIDHSTVVRHLKQIGKVKKLGKWVPcELSEKQKNCRFE 135 578899****************.....9***********************967*********97 PP >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 6.1e-06 0.01 11 39 .. 81 109 .. 78 110 .. 0.91 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 6.1e-06 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p i+ e+Ae+l++ stv r+lk T361167_1 81 IIEADPLITTPEVAEELNIDHSTVVRHLK 109 6778**********************998 PP >> HTH_23 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.059 96 31 49 .. 44 61 .. 43 62 .. 0.89 2 ! 10.5 0.0 0.00023 0.37 17 39 .. 87 109 .. 77 111 .. 0.82 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.059 HTH_23 31 rrTvyrwlkryreeGlegl 49 +rTv+ w k++ +G e+l T361167_1 44 ERTVQWWFKKF-HKGEESL 61 79*********.8999987 PP == domain 2 score: 10.5 bits; conditional E-value: 0.00023 HTH_23 17 GlsvreIAreLgvsrrTvyrwlk 39 ++++e+A+eL++ ++Tv r lk T361167_1 87 LITTPEVAEELNIDHSTVVRHLK 109 689***************99776 PP >> HTH_11 HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.1 2.3e-05 0.038 7 39 .. 79 111 .. 75 117 .. 0.88 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 2.3e-05 HTH_11 7 elLleargpisgeeLAeeLnvSrrtvrrdIkaL 39 + ++ea++ i+ e AeeLn+ +tv+r++k++ T361167_1 79 RAIIEADPLITTPEVAEELNIDHSTVVRHLKQI 111 556699999**********************87 PP >> HTH_28 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 0.0 0.025 42 25 47 .. 43 64 .. 40 71 .. 0.81 2 ? 8.3 0.0 0.0014 2.3 15 35 .. 90 110 .. 78 113 .. 0.87 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.025 HTH_28 25 srrtvyrWikryeegGiagLvpr 47 ++rtv+ W k++ + G+++L++ T361167_1 43 NERTVQWWFKKFHK-GEESLEDE 64 89************.99***994 PP == domain 2 score: 8.3 bits; conditional E-value: 0.0014 HTH_28 15 vreaArelgisrrtvyrWikr 35 +e+A+el+i+++tv r +k+ T361167_1 90 TPEVAEELNIDHSTVVRHLKQ 110 579************999986 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.8e-05 0.045 11 43 .. 78 109 .. 74 111 .. 0.89 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.8e-05 HHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdl.tvselarrlglsksavsrilk 43 L a+ ++++ l t e+a++l++++s+v r lk T361167_1 78 LRAIIEADP--LiTTPEVAEELNIDHSTVVRHLK 109 788899998..77******************998 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 3.4e-05 0.055 78 143 .. 240 303 .. 225 305 .. 0.77 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 3.4e-05 DDE_3 78 akkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivw.sklkrellkrrsfksld 143 k+ +l+ D a+ H ++ +++e + e+l PpySP+l p + ++l + l+ ++f++++ T361167_1 240 RKGPILLHDSAQPHIAQPALGKLNE--LGYEVLPHPPYSPDLSPTDYHFfKHLDNFLQG-KRFHNQQ 303 3478999999999999999999999..99***************997550556666666.6666654 PP >> HTH_17 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 9.3e-05 0.15 1 24 [. 87 110 .. 87 121 .. 0.78 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 9.3e-05 HTH_17 1 lltveEaAelLgvsrstvyrlirr 24 l t+ E+Ae L++ stv r +++ T361167_1 87 LITTPEVAEELNIDHSTVVRHLKQ 110 57****************998753 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.72 # Mc/sec: 2229.06 // Query: T361167_2 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 2229.06 // Query: T361167_3 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 2355.98 // Query: T364254_1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.72 # Mc/sec: 2205.22 // Query: T364254_2 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.1 4.2 0.026 14.4 4.2 1.3 1 DUF3439 Domain of unknown function (DUF3439) 2.3 8.3 4.6 0.53 10.3 0.3 2.1 2 DUF2256 Uncharacterized protein conserved in bacteria (DUF2 Domain annotation for each model (and alignments): >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 4.2 3.2e-06 0.026 30 69 .. 382 421 .. 363 450 .. 0.80 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.2e-06 DUF3439 30 sakcsgsgkpvrsiicpttttttttttttmpttttlpttt 69 cs +p+ s+ tt tt+tttttt +t +l t T364254_2 382 VESCSQPARPLLSLAQTTTKTTATTTTTTKHATCALAYTN 421 5679************999999999999999999987553 PP >> DUF2256 Uncharacterized protein conserved in bacteria (DUF2256) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.4 0.75 6.1e+03 7 14 .. 207 214 .. 206 214 .. 0.79 2 ? 10.3 0.3 6.6e-05 0.53 12 27 .. 303 318 .. 297 320 .. 0.92 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.75 DUF2256 7 sKiCavCg 14 +K C+ C+ T364254_2 207 AKYCIRCN 214 69999995 PP == domain 2 score: 10.3 bits; conditional E-value: 6.6e-05 DUF2256 12 vCgrpftwRkkWekdW 27 C+ pf R+kW + W T364254_2 303 SCQVPFFGRRKWIRSW 318 7*************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.69 # Mc/sec: 2301.10 // Query: T364254_3 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 2365.52 // Query: T323216_1 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-93 307.3 466.4 3.2e-17 62.3 8.0 41.8 39 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.8 0.067 1.1e+03 7 31 .. 51 74 .. 38 79 .. 0.59 2 ! 34.6 7.0 9.1e-13 1.5e-08 3 49 .. 79 124 .. 77 125 .. 0.96 3 ! 31.1 7.0 1.1e-11 1.8e-07 1 38 [. 130 166 .. 130 176 .. 0.93 4 ! 24.2 4.6 1.6e-09 2.7e-05 5 38 .. 177 209 .. 171 218 .. 0.92 5 ! 22.9 5.5 4e-09 6.4e-05 5 37 .. 221 252 .. 220 253 .. 0.97 6 ! 10.9 3.2 2.3e-05 0.38 1 34 [. 249 277 .. 249 288 .. 0.77 7 ! 22.8 16.3 4.5e-09 7.3e-05 1 49 [. 291 338 .. 291 339 .. 0.99 8 ! 9.1 1.8 8.2e-05 1.3 8 40 .. 352 383 .. 350 386 .. 0.84 9 ! 11.3 12.5 1.8e-05 0.29 2 34 .. 377 408 .. 376 436 .. 0.59 10 ! 19.0 0.3 6.7e-08 0.0011 23 48 .. 492 517 .. 461 517 .. 0.80 11 ! 24.2 0.9 1.6e-09 2.6e-05 29 50 .] 519 540 .. 519 540 .. 0.99 12 ! 12.3 0.4 8.5e-06 0.14 31 47 .. 542 558 .. 542 560 .. 0.95 13 ! 4.7 1.5 0.0019 31 14 39 .. 557 582 .. 557 587 .. 0.89 14 ! 8.7 2.1 0.00011 1.8 4 30 .. 592 617 .. 590 620 .. 0.89 15 ! 6.7 0.5 0.00045 7.4 3 18 .. 623 637 .. 622 641 .. 0.87 16 ! 22.9 14.1 4e-09 6.5e-05 1 50 [] 642 690 .. 642 690 .. 0.91 17 ! 8.8 2.0 0.0001 1.6 21 38 .. 682 699 .. 674 707 .. 0.82 18 ! 25.1 7.7 8.2e-10 1.3e-05 2 50 .] 696 753 .. 696 753 .. 0.81 19 ! 27.5 7.2 1.5e-10 2.5e-06 20 50 .] 744 774 .. 743 774 .. 0.96 20 ! 16.0 9.4 6e-07 0.0097 16 49 .. 761 794 .. 760 796 .. 0.91 21 ! 3.0 12.1 0.0069 1.1e+02 17 50 .] 783 828 .. 781 828 .. 0.81 22 ? 2.2 5.0 0.012 1.9e+02 14 38 .. 813 837 .. 811 851 .. 0.80 23 ? 0.3 33.8 0.046 7.6e+02 2 42 .. 857 983 .. 856 1002 .. 0.91 24 ! 33.5 4.4 2e-12 3.3e-08 19 50 .] 1016 1047 .. 1005 1047 .. 0.95 25 ! 12.6 17.6 6.6e-06 0.11 1 41 [. 1052 1093 .. 1052 1105 .. 0.88 26 ? -3.3 2.9 0.62 1e+04 25 41 .. 1107 1123 .. 1096 1134 .. 0.57 27 ? -3.8 2.8 0.88 1.4e+04 5 38 .. 1146 1193 .. 1145 1200 .. 0.74 28 ? -8.4 8.0 1 1.6e+04 6 42 .. 1223 1273 .. 1211 1276 .. 0.57 29 ? -2.6 1.0 0.39 6.3e+03 6 23 .. 1305 1335 .. 1304 1359 .. 0.66 30 ? -0.9 0.1 0.11 1.9e+03 6 13 .. 1354 1361 .. 1350 1376 .. 0.74 31 ? -2.8 0.2 0.44 7.2e+03 4 12 .. 1406 1414 .. 1406 1456 .. 0.76 32 ! 13.2 10.0 4.3e-06 0.07 17 50 .] 1538 1571 .. 1516 1571 .. 0.85 33 ! 27.7 3.3 1.3e-10 2.1e-06 17 50 .] 1571 1604 .. 1570 1604 .. 0.96 34 ! 62.3 8.0 1.9e-21 3.2e-17 1 50 [] 1609 1658 .. 1609 1658 .. 0.99 35 ! 12.3 0.9 8.5e-06 0.14 25 44 .. 1654 1673 .. 1653 1674 .. 0.91 36 ! 10.6 5.2 2.9e-05 0.47 24 49 .. 1685 1709 .. 1679 1710 .. 0.80 37 ! 4.0 2.0 0.0032 53 26 39 .. 1708 1723 .. 1707 1732 .. 0.73 38 ! 2.5 0.7 0.0095 1.5e+02 29 50 .] 1734 1756 .. 1734 1756 .. 0.86 39 ! 20.9 14.2 1.8e-08 0.00029 1 39 [. 1761 1821 .. 1761 1828 .. 0.95 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.067 DUF4705 7 srrpLqapaslqasglsrpsaqLpv 31 s +p q + ++ ++gl rp+ L++ T323216_1 51 SSQPPQ-TKLMTHNGLFRPIPYLTA 74 344555.666666666666666665 PP == domain 2 score: 34.6 bits; conditional E-value: 9.1e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323216_1 79 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 124 689*******.************************************ PP == domain 3 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323216_1 130 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 166 9***********.***********************86 PP == domain 4 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323216_1 177 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 209 899*****.***********************98 PP == domain 5 score: 22.9 bits; conditional E-value: 4e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpk 37 P+s++p q ++ l+++gls+ s++L+vAs+Gp T323216_1 221 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPA 252 9*******.***********************6 PP == domain 6 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323216_1 249 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 277 9***********5444.....4446888888887 PP == domain 7 score: 22.8 bits; conditional E-value: 4.5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323216_1 291 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 338 9***********.************************************ PP == domain 8 score: 9.1 bits; conditional E-value: 8.2e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323216_1 352 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 383 57799..889999****************99544 PP == domain 9 score: 11.3 bits; conditional E-value: 1.8e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323216_1 377 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 408 9**********.666666666666666666553 PP == domain 10 score: 19.0 bits; conditional E-value: 6.7e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323216_1 492 LQTKLSLPVASTGQNCPQVSLSRANS 517 488999*****************976 PP == domain 11 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323216_1 519 LPVASAGQNRPQVSLFTPSSCL 540 8********************9 PP == domain 12 score: 12.3 bits; conditional E-value: 8.5e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323216_1 542 VASAGAKLPQVGLSRPS 558 8***************6 PP == domain 13 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323216_1 557 PSLLLPEGMYRPSLCLTADSPCPALP 582 678999************99999997 PP == domain 14 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323216_1 592 APAFRQLVR-AQLLPHGGLFSPNSCLL 617 9*****555.***************95 PP == domain 15 score: 6.7 bits; conditional E-value: 0.00045 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323216_1 623 SAPASHWPLE-AQLMP 637 6********9.99887 PP == domain 16 score: 22.9 bits; conditional E-value: 4e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323216_1 642 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 690 8***********.***************99876666667899*******9 PP == domain 17 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323216_1 682 SLCGPSSCLPVASVGQAR 699 5667***********986 PP == domain 18 score: 25.1 bits; conditional E-value: 8.2e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323216_1 696 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 753 678888888888888888852.44311567899*************************9 PP == domain 19 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323216_1 744 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 774 79***************************87 PP == domain 20 score: 16.0 bits; conditional E-value: 6e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323216_1 761 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 794 56899**************************975 PP == domain 21 score: 3.0 bits; conditional E-value: 0.0069 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323216_1 783 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 828 57899***9637*********9989888888888888888888765 PP == domain 22 score: 2.2 bits; conditional E-value: 0.012 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323216_1 813 PGLLPPEGLHRPSLSLTADSPRPAS 837 678999********99998877765 PP == domain 23 score: 0.3 bits; conditional E-value: 0.046 DUF4705 2 gpAPasrrpLqa......................................................................................pa 15 gpAPa+++pLqa ++ T323216_1 857 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapqAQ 956 9***********************************************************************************************8778 PP DUF4705 16 slqasglsrpsaqLpvAsaGpklppag 42 ++ glsr s+++p+As+Gpk +p++ T323216_1 957 VRPHGGLSRISSCPPMASPGPKWSPVS 983 88*********************5543 PP == domain 24 score: 33.5 bits; conditional E-value: 2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323216_1 1016 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1047 589****************************9 PP == domain 25 score: 12.6 bits; conditional E-value: 6.6e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppa 41 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ pp+ T323216_1 1052 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclPPG 1093 8***********.***********************9988554 PP == domain 26 score: -3.3 bits; conditional E-value: 0.62 DUF4705 25 psaqLpvAsaGpklppa 41 p+a +As+ p ++p+ T323216_1 1107 PGAKSLPASRQPACSPV 1123 44444455555555544 PP == domain 27 score: -3.8 bits; conditional E-value: 0.88 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpkl 38 Pas++ L p+ l+ +++s p+ ++ A +G T323216_1 1146 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRRE 1193 788887766888888888888899999999984377777777777655 PP == domain 28 score: -8.4 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............paslqas.glsrpsaqLpvAsaGpklppag 42 as++pL p++l + + p + + +++a+p l +++ T323216_1 1223 ASHQPLPR*qrsa*apcltlaPPTLTPClTPVPPTLIPCLTPAPPMLTEVS 1273 444444337778887777777555554313446666666777777776665 PP == domain 29 score: -2.6 bits; conditional E-value: 0.39 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323216_1 1305 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 1335 7888887777777777777777777777666 PP == domain 30 score: -0.9 bits; conditional E-value: 0.11 DUF4705 6 asrrpLqa 13 as+rpL++ T323216_1 1354 ASHRPLHT 1361 999***95 PP == domain 31 score: -2.8 bits; conditional E-value: 0.44 DUF4705 4 APasrrpLq 12 A as+rpL T323216_1 1406 ALASHRPLP 1414 789999994 PP == domain 32 score: 13.2 bits; conditional E-value: 4.3e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323216_1 1538 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1571 45568**************************987 PP == domain 33 score: 27.7 bits; conditional E-value: 1.3e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323216_1 1571 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1604 8999****************************87 PP == domain 34 score: 62.3 bits; conditional E-value: 1.9e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323216_1 1609 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1658 9***********************************************98 PP == domain 35 score: 12.3 bits; conditional E-value: 8.5e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323216_1 1654 SSSSLPAASAGLSCPQVGLE 1673 6899**************96 PP == domain 36 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323216_1 1685 GPSSV-LLASPGAKLPRVSLSRPSSS 1709 45555.579***************97 PP == domain 37 score: 4.0 bits; conditional E-value: 0.0032 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323216_1 1708 SSCLPVASFGPAQlmA 1723 89*********86443 PP == domain 38 score: 2.5 bits; conditional E-value: 0.0095 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323216_1 1734 LLVASSGPELdLQSAFAGPASCL 1756 789*******8677888999998 PP == domain 39 score: 20.9 bits; conditional E-value: 1.8e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323216_1 1761 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1821 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 7643.65 // Query: T323216_2 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-64 211.6 462.1 1.2e-15 57.3 9.2 40.7 37 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 2.9 1.8e-07 0.003 29 48 .. 40 59 .. 31 59 .. 0.95 2 ! 11.7 3.8 1.3e-05 0.2 2 43 .. 67 108 .. 67 113 .. 0.90 3 ! 25.4 6.7 6.7e-10 1.1e-05 1 36 [. 119 153 .. 119 156 .. 0.94 4 ! 13.1 9.5 4.8e-06 0.078 3 50 .] 153 221 .. 151 221 .. 0.91 5 ! 4.3 7.3 0.0027 43 2 47 .. 195 230 .. 194 237 .. 0.69 6 ! 12.2 2.7 8.8e-06 0.14 3 26 .. 240 262 .. 239 269 .. 0.91 7 ! 14.9 4.9 1.3e-06 0.021 10 39 .. 289 317 .. 289 319 .. 0.96 8 ! 19.7 0.5 4.1e-08 0.00067 22 47 .. 333 358 .. 327 359 .. 0.91 9 ! 15.2 12.5 1e-06 0.017 8 38 .. 372 401 .. 365 417 .. 0.88 10 ! 15.9 5.0 6.2e-07 0.01 9 48 .. 458 496 .. 451 498 .. 0.94 11 ? 1.6 0.9 0.019 3.1e+02 7 27 .. 498 518 .. 497 525 .. 0.65 12 ! 6.5 4.3 0.00056 9.1 3 29 .. 536 562 .. 513 565 .. 0.90 13 ! 14.7 1.4 1.5e-06 0.024 1 30 [. 566 594 .. 566 597 .. 0.96 14 ? 0.8 4.7 0.033 5.5e+02 18 50 .] 601 637 .. 598 637 .. 0.80 15 ! 9.7 3.4 5.2e-05 0.85 8 43 .. 638 672 .. 637 677 .. 0.89 16 ! 20.5 15.6 2.2e-08 0.00037 2 49 .. 685 731 .. 684 731 .. 0.94 17 ? -1.9 0.0 0.22 3.6e+03 7 15 .. 732 739 .. 732 744 .. 0.81 18 ! 10.2 0.6 3.7e-05 0.6 1 15 [. 747 760 .. 747 767 .. 0.82 19 ! 21.1 14.2 1.5e-08 0.00025 1 39 [. 768 818 .. 768 821 .. 0.93 20 ! 24.3 25.2 1.5e-09 2.4e-05 1 50 [] 822 905 .. 822 905 .. 0.95 21 ! 8.8 7.5 0.00011 1.7 29 50 .] 905 926 .. 903 926 .. 0.96 22 ! 21.2 2.9 1.3e-08 0.00022 17 50 .] 926 959 .. 926 959 .. 0.96 23 ! 57.3 9.2 7.2e-20 1.2e-15 1 50 [] 964 1011 .. 964 1011 .. 0.99 24 ? -2.1 7.5 0.26 4.2e+03 5 50 .] 1012 1068 .. 1012 1068 .. 0.71 25 ? -5.8 21.6 1 1.6e+04 5 50 .] 1045 1113 .. 1041 1113 .. 0.78 26 ? 0.9 0.1 0.03 5e+02 13 29 .. 1120 1136 .. 1115 1136 .. 0.85 27 ? -2.7 1.5 0.39 6.4e+03 6 23 .. 1163 1193 .. 1158 1224 .. 0.58 28 ? -4.1 1.0 1 1.6e+04 24 36 .. 1282 1294 .. 1260 1302 .. 0.44 29 ? -3.0 0.6 0.51 8.3e+03 6 22 .. 1321 1350 .. 1320 1362 .. 0.68 30 ? -1.6 0.1 0.19 3.1e+03 31 46 .. 1463 1482 .. 1446 1483 .. 0.78 31 ? -0.3 9.9 0.07 1.1e+03 19 39 .. 1550 1571 .. 1537 1583 .. 0.69 32 ! 7.8 3.9 0.00021 3.4 1 25 [. 1598 1621 .. 1598 1624 .. 0.94 33 ! 12.8 0.4 5.7e-06 0.094 2 15 .. 1632 1644 .. 1632 1651 .. 0.82 34 ! 12.3 19.8 8.2e-06 0.13 1 37 [. 1652 1731 .. 1652 1733 .. 0.99 35 ! 10.5 2.7 3.1e-05 0.51 1 26 [. 1728 1752 .. 1728 1753 .. 0.93 36 ! 3.6 4.3 0.0043 70 5 26 .. 1754 1774 .. 1753 1774 .. 0.97 37 ! 13.9 4.5 2.7e-06 0.044 16 39 .. 1787 1810 .. 1785 1825 .. 0.87 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.8e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323216_2 40 LPAASPGPELSPVSLHRPSS 59 9*****************98 PP == domain 2 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323216_2 67 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 108 788********.***********************99765555 PP == domain 3 score: 25.4 bits; conditional E-value: 6.7e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323216_2 119 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 153 9***********.*******************9755 PP == domain 4 score: 13.1 bits; conditional E-value: 4.8e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323216_2 153 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 221 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323216_2 195 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 230 899********.7777777777777777655433.........333 PP == domain 6 score: 12.2 bits; conditional E-value: 8.8e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323216_2 240 PALASRWPLQ-AQLLSQDVISRPK 262 9*********.******9999995 PP == domain 7 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323216_2 289 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 317 9**.************************98 PP == domain 8 score: 19.7 bits; conditional E-value: 4.1e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323216_2 333 FGPVPVQLTATNVGPKLPQVKLSRPA 358 78889********************5 PP == domain 9 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323216_2 372 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 401 69***.**********************975 PP == domain 10 score: 15.9 bits; conditional E-value: 6.2e-07 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 r Lq + ++++s lsr s ++s+ p+l p+gLsrPss T323216_2 458 RTLQ-AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 496 88**.*********************************98 PP == domain 11 score: 1.6 bits; conditional E-value: 0.019 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323216_2 498 SQWPLQAKIVLKSASPGPTPS 518 577777655666666665554 PP == domain 12 score: 6.5 bits; conditional E-value: 0.00056 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323216_2 536 PALVCKWPLQEQNCLKSASPGPASCFP 562 9999******99999999999988776 PP == domain 13 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323216_2 566 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 594 8***********.****************9 PP == domain 14 score: 0.8 bits; conditional E-value: 0.033 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323216_2 601 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 637 56777788888888886656779999**********8 PP == domain 15 score: 9.7 bits; conditional E-value: 5.2e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323216_2 638 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 672 57777.999**********************98877 PP == domain 16 score: 20.5 bits; conditional E-value: 2.2e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323216_2 685 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 731 9********995..4689999**************************97 PP == domain 17 score: -1.9 bits; conditional E-value: 0.22 DUF4705 7 srrpLqapa 15 srrpLq ++ T323216_2 732 SRRPLQ-AQ 739 79****.66 PP == domain 18 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323216_2 747 PGPAPASRCPLQA-Q 760 9***********4.4 PP == domain 19 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323216_2 768 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 818 9*******************************9.89**********876666 PP == domain 20 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323216_2 822 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 905 8*********************************************6515699*****************************98 PP == domain 21 score: 8.8 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323216_2 905 LPASSPGPALPPGCVSRPDCCL 926 9********************9 PP == domain 22 score: 21.2 bits; conditional E-value: 1.3e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323216_2 926 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 959 6889****************************87 PP == domain 23 score: 57.3 bits; conditional E-value: 7.2e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323216_2 964 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1011 9*********************************************..97 PP == domain 24 score: -2.1 bits; conditional E-value: 0.26 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323216_2 1012 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1068 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 25 score: -5.8 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa.....................paslqas..glsrpsaqLpvAsaGpkl.ppagLsrPssCL 50 asr+p qa p l+++ + ++ +a+Lp+A + p+ p +gL Ps CL T323216_2 1045 TASRWPVQAqlwl*nslcrprscllgtspgP-ALAPTaaSRGQVPACLPAARVRPSSrPHGGLPGPSPCL 1113 59******99999999999999999999863.34333013466789999999988877999999999998 PP == domain 26 score: 0.9 bits; conditional E-value: 0.03 DUF4705 13 apaslqasglsrpsaqL 29 a++ l++ gl p a+L T323216_2 1120 AAQFLPHGGLLMPNACL 1136 68899999999999998 PP == domain 27 score: -2.7 bits; conditional E-value: 0.39 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323216_2 1163 ASHRPLPC*ersa*apclapaPAMLREVGVS 1193 6666665566666665555554444444443 PP == domain 28 score: -4.1 bits; conditional E-value: 1 DUF4705 24 rpsaqLpvAsaGp 36 p + + +++a+p T323216_2 1282 PPTLIPCLTPAPP 1294 3444444444444 PP == domain 29 score: -3.0 bits; conditional E-value: 0.51 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323216_2 1321 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 1350 788888666677776666666666666655 PP == domain 30 score: -1.6 bits; conditional E-value: 0.19 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323216_2 1463 EATVGPADalllPELGLYRP 1482 58888876667799999999 PP == domain 31 score: -0.3 bits; conditional E-value: 0.07 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323216_2 1550 SRRPLRAQLFLPAASLGPTPaS 1571 6777888888888888887752 PP == domain 32 score: 7.8 bits; conditional E-value: 0.00021 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323216_2 1598 PGPGQASRWPRQ-AQLLPSDGISRS 1621 9***********.********9985 PP == domain 33 score: 12.8 bits; conditional E-value: 5.7e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323216_2 1632 GPAWASRRPLQA-Q 1644 9**********4.4 PP == domain 34 score: 12.3 bits; conditional E-value: 8.2e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323216_2 1652 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1731 9***************************************************************.***************7 PP == domain 35 score: 10.5 bits; conditional E-value: 3.1e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA +++pLq ++ l +s++ +++ T323216_2 1728 PGPAFDFWWPLQ-AQNLTSSRPLQAR 1752 9***********.*******999876 PP == domain 36 score: 3.6 bits; conditional E-value: 0.0043 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp + ++ +++sgls+ps T323216_2 1754 PASRRPAR-AQPQPHSGLSTPS 1774 9*******.************7 PP == domain 37 score: 13.9 bits; conditional E-value: 2.7e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpklp 39 +l+ +++rps++LpvAs Gp + T323216_2 1787 LLPFGRFGRPSSCLPVASLGPAHS 1810 578889***************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.73 # Mc/sec: 7434.24 // Query: T323216_3 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-19 67.8 61.9 1.5e-11 44.2 11.0 38.5 34 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 1.0 0.0002 3.3 4 24 .. 37 57 .. 36 73 .. 0.90 2 ? -0.8 15.8 0.1 1.6e+03 7 36 .. 114 142 .. 87 143 .. 0.73 3 ! 23.1 4.0 3.6e-09 5.9e-05 1 31 [. 140 169 .. 140 182 .. 0.88 4 ! 16.3 2.8 4.6e-07 0.0075 1 35 [. 183 216 .. 183 225 .. 0.90 5 ! 44.2 11.0 9.4e-16 1.5e-11 1 50 [] 227 275 .. 227 275 .. 0.99 6 ! 23.2 0.8 3.2e-09 5.2e-05 28 50 .] 274 296 .. 273 296 .. 0.97 7 ? -1.2 12.2 0.14 2.2e+03 20 41 .. 372 398 .. 301 401 .. 0.88 8 ? 0.9 3.4 0.031 5.1e+02 5 26 .. 402 422 .. 402 423 .. 0.94 9 ! 4.9 0.8 0.0017 28 28 47 .. 486 505 .. 478 508 .. 0.85 10 ? 1.7 1.3 0.017 2.8e+02 7 27 .. 508 527 .. 506 533 .. 0.90 11 ? -0.3 0.1 0.07 1.1e+03 7 24 .. 529 545 .. 527 548 .. 0.87 12 ! 9.6 9.3 5.8e-05 0.95 6 38 .. 549 591 .. 545 597 .. 0.89 13 ! 10.5 6.3 3e-05 0.49 1 33 [. 599 630 .. 599 630 .. 0.95 14 ! 3.8 2.7 0.0039 63 19 43 .. 637 662 .. 634 664 .. 0.80 15 ! 15.6 13.1 7.9e-07 0.013 1 38 [. 652 709 .. 652 718 .. 0.87 16 ? 2.2 14.0 0.012 1.9e+02 1 49 [. 705 762 .. 705 763 .. 0.95 17 ? -0.9 8.6 0.11 1.9e+03 7 41 .. 784 816 .. 782 816 .. 0.86 18 ! 3.5 8.2 0.0047 77 3 26 .. 813 835 .. 811 835 .. 0.91 19 ! 15.4 1.9 9e-07 0.015 14 36 .. 846 868 .. 840 873 .. 0.91 20 ? 2.4 0.0 0.01 1.7e+02 27 39 .. 871 883 .. 869 886 .. 0.89 21 ! 6.3 11.4 0.00062 10 1 38 [. 878 924 .. 878 932 .. 0.85 22 ! 16.2 2.3 5.1e-07 0.0083 1 26 [. 953 977 .. 953 979 .. 0.95 23 ? -1.3 4.4 0.15 2.4e+03 1 29 [. 986 1024 .. 986 1029 .. 0.77 24 ? 2.1 7.1 0.012 2e+02 7 46 .. 1036 1079 .. 1031 1080 .. 0.83 25 ? -4.1 17.5 1 1.6e+04 10 50 .] 1071 1125 .. 1070 1125 .. 0.84 26 ? -3.7 5.3 0.81 1.3e+04 6 23 .. 1179 1209 .. 1175 1237 .. 0.57 27 ? -2.2 1.0 0.28 4.6e+03 6 23 .. 1288 1318 .. 1276 1341 .. 0.63 28 ? -7.7 7.0 1 1.6e+04 6 36 .. 1337 1397 .. 1333 1407 .. 0.47 29 ! 2.9 0.9 0.007 1.1e+02 8 27 .. 1540 1558 .. 1537 1560 .. 0.87 30 ! 11.1 11.0 2e-05 0.32 14 48 .. 1599 1645 .. 1594 1646 .. 0.74 31 ? -5.7 12.3 1 1.6e+04 9 45 .. 1649 1694 .. 1648 1699 .. 0.62 32 ? -4.8 14.2 1 1.6e+04 7 46 .. 1699 1751 .. 1697 1754 .. 0.80 33 ? 0.2 1.8 0.05 8.2e+02 16 34 .. 1765 1783 .. 1752 1789 .. 0.72 34 ! 22.8 3.2 4.3e-09 7.1e-05 2 36 .. 1795 1828 .. 1794 1835 .. 0.91 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323216_3 37 APTSRQPLQAQNFLQSASTDQ 57 9********999999987655 PP == domain 2 score: -0.8 bits; conditional E-value: 0.1 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323216_3 114 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 142 345555.**********************9 PP == domain 3 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323216_3 140 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 169 9***********.*****************9 PP == domain 4 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323216_3 183 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 216 57*******9996..7*******************9 PP == domain 5 score: 44.2 bits; conditional E-value: 9.4e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323216_3 227 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 275 8***********.************************************9 PP == domain 6 score: 23.2 bits; conditional E-value: 3.2e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323216_3 274 CLLVAYEGPKSPQVDLSRPSSCL 296 9*********************9 PP == domain 7 score: -1.2 bits; conditional E-value: 0.14 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323216_3 372 NSLCRPCSCLPGASPGPALaswrlPQA 398 5799*************9965555555 PP == domain 8 score: 0.9 bits; conditional E-value: 0.031 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323216_3 402 PACQQPQQ-AQLFPHSGPFRPN 422 9*******.*********9996 PP == domain 9 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323216_3 486 LLQLASPDQALPPSGLYRPK 505 6889***************6 PP == domain 10 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323216_3 508 SSQPLQ-GQLLATGGFCRPKS 527 689***.***********976 PP == domain 11 score: -0.3 bits; conditional E-value: 0.07 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323216_3 529 SSQPLH-TQLLSVSGLCR 545 78****.*****999866 PP == domain 12 score: 9.6 bits; conditional E-value: 5.8e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323216_3 549 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 591 788999999999999999********************99888 PP == domain 13 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323216_3 599 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 630 8***********.*****9999999******98 PP == domain 14 score: 3.8 bits; conditional E-value: 0.0039 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323216_3 637 SRGLNGPSPCLSAASTGPAStSQWAL 662 789999999*****999976566555 PP == domain 15 score: 15.6 bits; conditional E-value: 7.9e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323216_3 652 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 709 688888888888888888888888888888888**********************876 PP == domain 16 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323216_3 705 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 762 89999999*************9899******************************997 PP == domain 17 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323216_3 784 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 816 679***77789********8..8889999999886 PP == domain 18 score: 3.5 bits; conditional E-value: 0.0047 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323216_3 813 RPPASRRPAQ-AQPQPHSGLSTPS 835 66********.************7 PP == domain 19 score: 15.4 bits; conditional E-value: 9e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323216_3 846 PKLLPLGRFGRPSSRLPVASSGP 868 8999******************9 PP == domain 20 score: 2.4 bits; conditional E-value: 0.01 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323216_3 871 SFLTTAFPGPVFP 883 79*********97 PP == domain 21 score: 6.3 bits; conditional E-value: 0.00062 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323216_3 878 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 924 7888889**************766651678***************86 PP == domain 22 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323216_3 953 PGPGQASRWPLQ-DQLLPSDGVSRPQ 977 9***********.9***********7 PP == domain 23 score: -1.3 bits; conditional E-value: 0.15 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323216_3 986 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1024 8899998.77799988888888888888877776666666 PP == domain 24 score: 2.1 bits; conditional E-value: 0.012 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323216_3 1036 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1079 567799.9**********************997666445666655 PP == domain 25 score: -4.1 bits; conditional E-value: 1 DUF4705 10 pLqa..............paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 pLqa pas q+ p + +++As+G+++ pa++ +Pss+L T323216_3 1071 PLQAqlspprrppgakslPASRQPA--CGPALAPTAASRGQVPacLPAARVQPSSSL 1125 8899999999999977777776666..479999*******9998877********98 PP == domain 26 score: -3.7 bits; conditional E-value: 0.81 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l+ +gl T323216_3 1179 ASHRPLPC*ersa*apclapaPPTLREVGLT 1209 5666665566666666666666666666653 PP == domain 27 score: -2.2 bits; conditional E-value: 0.28 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323216_3 1288 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 1318 5555554477777777777777777776665 PP == domain 28 score: -7.7 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGp 36 as+rpL p++l + p + + ++ a+p T323216_3 1337 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPP 1397 5666665555566665555555555556663333333333333221102223333444444 PP == domain 29 score: 2.9 bits; conditional E-value: 0.007 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323216_3 1540 ARPLQ-THLQPPGVLSGPSS 1558 69***.99999999999987 PP == domain 30 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323216_3 1599 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1645 555699*******************6666666666666666666666 PP == domain 31 score: -5.7 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323216_3 1649 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1694 7888.666666654222222277778886577888865558888888 PP == domain 32 score: -4.8 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323216_3 1699 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1751 67999998888644344444678999999999999999999999999999999 PP == domain 33 score: 0.2 bits; conditional E-value: 0.05 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323216_3 1765 SLTADSPRPASSRLTAASP 1783 5677777788888888875 PP == domain 34 score: 22.8 bits; conditional E-value: 4.3e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323216_3 1795 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1828 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.76 # Mc/sec: 7140.78 // Query: T069161_1 [L=2302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-21 75.6 0.0 6e-21 74.7 0.0 1.4 1 rve Integrase core domain 1.1e-20 74.1 0.0 1.6e-20 73.6 0.0 1.2 1 RNase_H RNase H 4.1e-16 58.6 3.4 6.2e-16 58.1 3.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 0.00052 20.1 0.0 0.0011 19.1 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.12 11.9 0.0 0.27 10.8 0.0 1.5 1 RVT_3 Reverse transcriptase-like Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.7 0.0 1.8e-24 6e-21 6 118 .. 1129 1237 .. 1127 1238 .. 0.89 Alignments for each domain: == domain 1 score: 74.7 bits; conditional E-value: 1.8e-24 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 + wq+D+t+++ + ++ +yllv++d+f++++ a+++ +e +a +vi l + ++g p + sDn +++ts+ ++++ + lgi++ ++ ++pq T069161_1 1129 QDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGSE-KATAVISSLLSDIILQFGL-PTSIQSDNRPAFTSQITQAVSQALGIQWNLHISYHPQ 1222 56*********..55556**********************.6666666666666666666.************************************* PP rve 104 dnGkvErfnrtlkde 118 + GkvE++n++lk++ T069161_1 1223 SSGKVEQTNGLLKTH 1237 ************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.6 0.0 4.9e-24 1.6e-20 3 142 .. 862 1006 .. 860 1007 .. 0.85 Alignments for each domain: == domain 1 score: 73.6 bits; conditional E-value: 4.9e-24 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 +++++ DGs+ + +++++ag+ ++++ + +++l++ +t +aEL A+++aL a ++ ++niytDSkY+++ +++ v +w ++++ tt+ + T069161_1 862 DHTWFIDGSSTRPncHSPAKAGYaIVSST-SVIDATALPPSTTSEQAELVALTQALTlA--KGLCINIYTDSKYAFHILHHRVVTWAERGYLTTQGS- 955 579******9876688888****555544.5567788999****************977..99**************9999**********777666. PP BHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 97 pvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++n++l+++l ++a +k+ + +kgH+ + gN aD++A++aa T069161_1 956 SIINASLIKTLLKAALlPKEAGVIDCKGHQKAsepiALGNAYADKVARQAA 1006 6***8888877666655************665578877***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 3.4 1.9e-19 6.2e-16 468 560 .. 1971 2059 .. 1971 2060 .. 0.76 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 1.9e-19 HTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHH..HHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXX CS TLV_coat 468 LfleeGGlCaALkEeCCFyadksgivrdsiakLqerleq..rqrllednqlwfegllglspwlttllstilgpLlllLLiLllG.PcilnrLvqli 560 L++e+GGlC L+EeCCFy + sg+v d+i+kL++r ++ q + ++ w l + w++++l +pL+l+ L Lll Pci+ + q+i T069161_1 1971 LTAEKGGLCIFLNEECCFYLNLSGLVYDNIKKLKDRAQKlaNQASNYAEPPW--ALSNWMSWVLPIL----SPLILIFL-LLLF*PCIFCLVSQFI 2059 89*********************************98762233334445555..7888888888888....99976555.5556666666666665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.0 3.2e-07 0.0011 66 100 .. 311 345 .. 296 346 .. 0.82 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 3.2e-07 ETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 66 lieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ +++ s+l++p++p++llGrd+L+kl + L T069161_1 311 CQFGQHSFMHSFLVIPTCPLPLLGRDILTKLPASL 345 4555555556********************98887 PP >> RVT_3 Reverse transcriptase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 8.3e-05 0.27 14 70 .. 881 931 .. 870 958 .. 0.78 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 8.3e-05 RVT_3 14 gagvvirdpngevllagaeklenlataeeaEalAlleGLqlAlklgirrlivegDsq 70 +ag++i + + v+ a a l + +t+e+aE+ Al ++L+lA+ l i + +Ds+ T069161_1 881 KAGYAIVS-STSVIDATA--LPPSTTSEQAELVALTQALTLAKGLCI---NIYTDSK 931 56666664.555777777..6699******************99854...4555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.62 # Mc/sec: 10621.98 // Query: T069161_2 [L=2301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-21 75.3 9.0 4.4e-16 58.6 3.0 2.2 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.4 1.2e-08 0.0002 243 278 .. 1555 1590 .. 1545 1593 .. 0.90 2 ! 58.6 3.0 2.7e-20 4.4e-16 260 462 .. 1765 1966 .. 1746 1976 .. 0.74 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.2e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavn 278 +++++++L a+npsl+ +CwlC+ +++ y a++ + T069161_2 1555 INLTHSLLAASNPSLVSNCWLCISLSSSAYTAVPAL 1590 6889*****************************976 PP == domain 2 score: 58.6 bits; conditional E-value: 2.7e-20 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX...XX CS TLV_coat 260 dCwlClesgppyyeaiavngsv.snktsapacslspqlkltlsevtgqgllig.kvPkthqalcnktektskgse.ylvapngtvfacntgltpclst 354 +C+l s+ ++ v + + +++++++++s++++++ l t l + + + q +++t ++ + + + ++g +f+c+ ++ T069161_2 1765 SCLLIPSSENNNERLLVVTQRFlIHHENQTSPSVQLPHQSPLQPLTAAALAATpG--VWVQDTPFSTPSHLFTLHlQFCLTQGLFFLCGSST----YM 1856 5555555554444444444333033444333666666666555555555533332..22333333334333333338899********9865....69 PP XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXX...XXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 355 allnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGL...giaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskl 447 l+++ t+ C l+ l P+i++++ ++ + t++kR + l++lL+ L + ++++gtG++g+ s+++f +L++ + ++++ s l T069161_2 1857 CLPANQTGTCTLVFLTPKIQFANRTkELPVPLMTLTQQKR---VIPLVPLLVSLglsASTTALGTGIAGIsTSVTTFCSLSNDFSPSITDISQTSSVL 1951 9*********************9988888889999*****...89999999988446667899*********************************** PP HHHHHHHHHHHHHHH CS TLV_coat 448 eksltslaevvlQNR 462 + +++sl vvlQNR T069161_2 1952 QAQVDSLTAVVLQNR 1966 **************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.71 # Mc/sec: 9271.51 // Query: T069161_3 [L=2301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-11 43.6 0.1 3.7e-11 42.8 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.8 0.1 2.3e-15 3.7e-11 65 188 .. 484 587 .. 437 600 .. 0.78 Alignments for each domain: == domain 1 score: 42.8 bits; conditional E-value: 2.3e-15 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + ++++ lDlk+aF ++pl+ +++l+af+ ++ + +++ ++++lpqG+ SP f+ ++++ l +++ +l+ T069161_3 484 PSSTTHYSVLDLKDAFLTIPLHPPSQPLFAFTWTDP-------------------DTHQSQQLTWTVLPQGFRDSPHYFSQALSHDLLSFHPS--TSHLI 562 34559****************************988...................334599********************999888888875..79*** PP ECTTEEEEEESS.HHHHHHHHHHHH CS RVT_1 165 rYaDDililsks.keelqelleave 188 +Y+DD+l+ s s +++ q l ++ T069161_3 563 QYIDDLLFCSPSfESSQQDTLLLLQ 587 ***********95555433333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 9680.54 // Query: T048483_1 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 1403.59 // Query: T048483_2 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 1448.87 // Query: T048483_3 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.59 # Mc/sec: 1522.54 // Query: T369154_1 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.61 # Mc/sec: 2541.92 // Query: T369154_2 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 2668.46 // Query: T369154_3 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2345.01 // Query: T337193_1 [L=6839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1575 (0.0965902); expected 326.1 (0.02) Passed bias filter: 409 (0.0250828); expected 326.1 (0.02) Passed Vit filter: 305 (0.0187048); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.95u 0.62s 00:00:06.57 Elapsed: 00:00:01.17 # Mc/sec: 16722.41 // Query: T337193_2 [L=6839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1903 (0.116706); expected 326.1 (0.02) Passed bias filter: 517 (0.0317061); expected 326.1 (0.02) Passed Vit filter: 451 (0.0276585); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.85u 0.69s 00:00:08.53 Elapsed: 00:00:01.51 # Mc/sec: 12957.10 // Query: T337193_3 [L=6839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1518 (0.0930946); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 210 (0.0128787); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.03u 0.57s 00:00:05.60 Elapsed: 00:00:01.31 # Mc/sec: 14935.28 // Query: T244182_1 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 4061.57 // Query: T244182_2 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 4651.16 // Query: T244182_3 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 5334.92 // Query: T219934_1 [L=1646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 771 (0.0472832); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 8118.84 // Query: T219934_2 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 721 (0.0442169); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.38s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 7590.43 // Query: T219934_3 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1200 (0.0735925); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.60 # Mc/sec: 7843.44 // Query: T338753_1 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4795.79 // Query: T338753_2 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 4710.15 // Query: T338753_3 [L=921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4705.04 // Query: T016101_1 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 12187.14 // Query: T016101_2 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-07 28.3 2.1 6.9e-05 22.2 1.3 2.5 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 1.3 4.3e-09 6.9e-05 3 16 .. 1614 1627 .. 1614 1629 .. 0.94 2 ! 4.2 0.0 0.002 33 7 19 .] 2464 2476 .. 2464 2476 .. 0.98 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 4.3e-09 DUF1725 3 agKWMELEnIILSE 16 ag+WMELE IILS+ T016101_2 1614 AGTWMELEAIILSK 1627 8************7 PP == domain 2 score: 4.2 bits; conditional E-value: 0.002 DUF1725 7 MELEnIILSEisQ 19 MELE I S+++Q T016101_2 2464 MELEAVIHSKVTQ 2476 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.60 # Mc/sec: 12187.14 // Query: T016101_3 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.07 13.2 0.2 0.13 12.3 0.2 1.3 1 COG5 Golgi transport complex subunit 5 Domain annotation for each model (and alignments): >> COG5 Golgi transport complex subunit 5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.2 8e-06 0.13 20 72 .. 1857 1909 .. 1844 1926 .. 0.89 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 8e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS COG5 20 atnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslss 72 +++n++ ++l +++ +r++y +l++++++l ++n+++Ll+++++ ++++ T016101_3 1857 QAENQTVNKLQFAISTQRIKYLAIQLTREVKDLFKENYKPLLKEIKEDTNKQR 1909 57899999*************************************99888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.59 # Mc/sec: 12393.70 // Query: T032046_1 [L=8501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.37s 00:00:02.12 Elapsed: 00:00:00.64 # Mc/sec: 37999.87 // Query: T032046_2 [L=8500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.40s 00:00:02.35 Elapsed: 00:00:00.75 # Mc/sec: 32422.74 // Query: T032046_3 [L=8500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.44s 00:00:02.24 Elapsed: 00:00:00.74 # Mc/sec: 32860.89 // Query: T337266_1 [L=493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 2518.55 // Query: T337266_2 [L=492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 2559.14 // Query: T337266_3 [L=492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 2234.17 // Query: T001048_1 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.43s 00:00:01.86 Elapsed: 00:00:00.80 # Mc/sec: 12491.10 // Query: T001048_2 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 603 (0.0369803); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.39s 00:00:01.86 Elapsed: 00:00:00.76 # Mc/sec: 13148.53 // Query: T001048_3 [L=3492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:00.77 # Mc/sec: 12974.05 // Query: T022090_1 [L=2500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 9536.10 // Query: T022090_2 [L=2500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.73 # Mc/sec: 9797.36 // Query: T022090_3 [L=2499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9793.44 // Query: T235349_1 [L=6047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.38s 00:00:02.19 Elapsed: 00:00:00.83 # Mc/sec: 20842.70 // Query: T235349_2 [L=6047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.44s 00:00:02.29 Elapsed: 00:00:00.85 # Mc/sec: 20352.28 // Query: T235349_3 [L=6046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.48s 00:00:02.58 Elapsed: 00:00:00.92 # Mc/sec: 18800.63 // Query: T192234_1 [L=274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 57 (0.00349565); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.64 # Mc/sec: 1224.79 // Query: T192234_2 [L=273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.66 # Mc/sec: 1183.34 // Query: T192234_3 [L=273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.60 # Mc/sec: 1301.68 // Query: T070176_1 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 4581.66 // Query: T070176_2 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.73 # Mc/sec: 4142.33 // Query: T070176_3 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 4319.85 // Query: T342381_1 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 23.6 0.1 5.6e-05 22.6 0.1 1.5 1 Thymosin Thymosin beta-4 family Domain annotation for each model (and alignments): >> Thymosin Thymosin beta-4 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.6 0.1 3.4e-09 5.6e-05 1 25 [. 673 697 .. 673 698 .. 0.96 Alignments for each domain: == domain 1 score: 22.6 bits; conditional E-value: 3.4e-09 Thymosin 1 DkPkvseiesFdkskLKkteTqEKn 25 Dk +++ei++F k kLKk eTqE++ T342381_1 673 DKLDIGEIAGFGKVKLKKRETQENT 697 999********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5495.81 // Query: T342381_2 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5593.94 // Query: T342381_3 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 4408.10 // Query: T036343_1 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 10287.23 // Query: T036343_2 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.70 # Mc/sec: 10728.11 // Query: T036343_3 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.68 # Mc/sec: 11039.44 // Query: T353216_1 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-06 27.3 6.1 7.5e-06 26.4 6.1 1.5 1 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 6.1 4.6e-10 7.5e-06 1 77 [] 186 262 .. 186 262 .. 0.88 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 4.6e-10 EEEEEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTT..EEEEEEEEEEESCCGGCCCCCCSTSECEEEEEEEESSTTTT CS UPAR_LY6 1 CysClge.ssesClpeveCpeadsvCvsatlklqagn..lettlvvkgCaresscrlladfinigsikvsesccqsdlcn 77 Cy Cl + + sC+ +Cp+ d+vCvs+++++ ++ e++l +C ++ +ll + ++ +++ ++scc++dlcn T353216_1 186 CYRCLAVlEGASCSVV-SCPFLDGVCVSQKVSVFGSKvrGENKLSLLSCQKDVGFPLL--KLTSAVVDSQISCCKGDLCN 262 ****************.***************99988444567788899976666666..69999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 6523.63 // Query: T353216_2 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 6632.36 // Query: T353216_3 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 6744.77 // Query: T276198_1 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.74 # Mc/sec: 5814.44 // Query: T276198_2 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.78 # Mc/sec: 5516.27 // Query: T276198_3 [L=1503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.76 # Mc/sec: 5657.67 // Query: T159813_1 [L=224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.61 # Mc/sec: 1050.53 // Query: T159813_2 [L=224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 1050.53 // Query: T159813_3 [L=223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.57 # Mc/sec: 1099.94 // Query: T357967_1 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1494 (0.0916227); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 3597.59 // Query: T357967_2 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1379 (0.0845701); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.61 # Mc/sec: 4300.62 // Query: T357967_3 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1443 (0.088495); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 3915.49 // Query: T051316_1 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 532 (0.032626); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.40s 00:00:01.77 Elapsed: 00:00:00.73 # Mc/sec: 9056.68 // Query: T051316_2 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.71 # Mc/sec: 9311.80 // Query: T051316_3 [L=2310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 675 (0.0413958); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.69 # Mc/sec: 9577.56 // Query: T374587_1 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 5954.76 // Query: T374587_2 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-12 45.5 0.0 1.1e-11 44.8 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.8 0.0 7e-16 1.1e-11 3 86 .. 48 127 .. 46 133 .. 0.92 Alignments for each domain: == domain 1 score: 44.8 bits; conditional E-value: 7e-16 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafref 86 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l r + ++g p+ + sDng+++++ +++ T374587_2 48 APFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTHVLLRDLIPRFGL-PLQISSDNGPAFVADLLQKT 127 689999********..9999***********************.******************9.*************8766655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.75 # Mc/sec: 4287.43 // Query: T374587_3 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-07 30.1 3.7 0.0026 16.4 2.5 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 0.045 13.8 0.0 0.075 13.1 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.0 4.3e-06 0.035 330 393 .. 481 542 .. 462 548 .. 0.77 2 ! 16.4 2.5 3.2e-07 0.0026 445 559 .. 605 723 .. 588 725 .. 0.76 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-06 XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXX CS TLV_coat 330 gseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge.......yiyaidepatRvkR 393 ++ +ap+g +++c + +t+l+++++++Cv ++ P + l + + ++ya ++ kR T374587_3 481 SHQDWMAPAGLYWICRHRA----YTQLPDQWAGSCVIGTIKPSFFLLPIKtgdllgfPVYA-----SQEKR 542 455678*********8654....6*********************9998877444444444.....44444 PP == domain 2 score: 16.4 bits; conditional E-value: 3.2e-07 HHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HH.....HHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XX CS TLV_coat 445 skleksltslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksg.....ivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgp 538 + l ++ t++ + + QNR LD L + eGG+C + +CC d g ivrd + kL + q ++ l f +l + + tl+ ++ + T374587_3 605 TLLAQQETQMRNAIYQNRLALDYLLAAEGGVCEKFNlTKCCLQRDDQGqvvknIVRD-MTKLAHVPMQVWHRFDPGSL-FGKWLPALGGFKTLIIGMIMV 702 556677778888999******************998679****99864322227776.89999999999999998888.688888888888888555555 PP XXXXXXXXXXXXXXXXXXXXX CS TLV_coat 539 LlllLLiLllGPcilnrLvql 559 L + +L+ ++ P+ l+ L + T374587_3 703 LGTCMLLPCMLPIFLQLLRSF 723 555566666666666666665 PP >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 9.2e-06 0.075 25 106 .. 599 675 .. 582 678 .. 0.80 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 9.2e-06 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374587_3 599 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 675 469******977.5555555556667788888887774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 5450.12 // Query: T323208_1 [L=2064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-71 236.7 504.4 3.6e-08 33.4 4.4 48.1 42 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 2.9 2e-07 0.0033 29 48 .. 56 75 .. 47 75 .. 0.95 2 ! 11.6 3.8 1.4e-05 0.22 2 43 .. 83 124 .. 83 129 .. 0.90 3 ! 25.8 6.2 5.1e-10 8.4e-06 1 36 [. 135 169 .. 135 171 .. 0.94 4 ! 13.0 9.4 5.1e-06 0.084 3 50 .] 169 237 .. 167 237 .. 0.91 5 ! 4.3 7.1 0.0027 43 2 47 .. 211 246 .. 211 253 .. 0.68 6 ! 12.1 2.7 9.7e-06 0.16 3 26 .. 256 278 .. 255 285 .. 0.91 7 ! 14.8 4.9 1.4e-06 0.023 10 39 .. 305 333 .. 305 335 .. 0.96 8 ! 19.9 0.2 3.5e-08 0.00057 22 47 .. 349 374 .. 341 376 .. 0.91 9 ! 21.0 5.7 1.6e-08 0.00026 8 37 .. 388 416 .. 381 417 .. 0.90 10 ! 3.7 1.7 0.0041 67 22 39 .. 413 430 .. 412 433 .. 0.87 11 ! 9.0 5.8 9e-05 1.5 2 45 .. 488 530 .. 446 532 .. 0.90 12 ? 0.9 1.6 0.029 4.8e+02 19 39 .. 525 545 .. 522 555 .. 0.89 13 ! 6.4 4.0 0.0006 9.8 19 49 .. 556 588 .. 550 588 .. 0.87 14 ! 5.9 10.2 0.00085 14 5 49 .. 620 660 .. 592 660 .. 0.94 15 ! 4.5 0.9 0.0023 37 1 19 [. 666 683 .. 666 686 .. 0.91 16 ! 17.3 9.3 2.3e-07 0.0038 1 40 [. 687 737 .. 687 740 .. 0.94 17 ! 3.5 2.6 0.0048 78 30 49 .. 758 777 .. 753 778 .. 0.79 18 ? -1.9 0.1 0.22 3.6e+03 23 33 .. 789 799 .. 779 801 .. 0.65 19 ! 18.3 0.3 1.1e-07 0.0017 23 48 .. 834 859 .. 828 859 .. 0.89 20 ! 24.1 0.9 1.8e-09 2.9e-05 29 50 .] 861 882 .. 861 882 .. 0.99 21 ! 12.2 0.4 8.7e-06 0.14 31 47 .. 884 900 .. 884 903 .. 0.94 22 ! 4.6 1.4 0.0021 34 14 39 .. 899 924 .. 899 928 .. 0.89 23 ! 8.6 2.1 0.00012 2 4 30 .. 934 959 .. 932 962 .. 0.89 24 ! 6.6 0.5 0.00049 8.1 3 18 .. 965 979 .. 964 983 .. 0.87 25 ! 22.4 14.5 5.7e-09 9.4e-05 1 50 [] 984 1032 .. 984 1032 .. 0.91 26 ! 8.4 2.3 0.00014 2.3 21 38 .. 1024 1041 .. 1016 1049 .. 0.82 27 ! 21.5 19.0 1.1e-08 0.00018 7 50 .] 1064 1116 .. 1038 1116 .. 0.91 28 ! 16.1 9.3 5.6e-07 0.0091 16 49 .. 1103 1136 .. 1101 1138 .. 0.91 29 ! 2.8 12.1 0.0075 1.2e+02 17 50 .] 1125 1170 .. 1123 1170 .. 0.81 30 ? 2.1 4.9 0.012 2e+02 14 38 .. 1155 1179 .. 1153 1193 .. 0.80 31 ? 0.7 33.3 0.036 5.8e+02 2 42 .. 1199 1325 .. 1198 1344 .. 0.91 32 ! 33.4 4.4 2.2e-12 3.6e-08 19 50 .] 1358 1389 .. 1347 1389 .. 0.95 33 ! 18.0 17.1 1.4e-07 0.0022 1 50 [] 1394 1455 .. 1394 1455 .. 0.96 34 ? -3.2 1.2 0.56 9.2e+03 11 11 .. 1531 1531 .. 1519 1565 .. 0.46 35 ? -2.9 0.1 0.45 7.4e+03 32 46 .. 1631 1649 .. 1631 1650 .. 0.75 36 ? -0.5 10.0 0.084 1.4e+03 19 39 .. 1717 1738 .. 1704 1750 .. 0.69 37 ! 7.7 3.9 0.00023 3.7 1 25 [. 1765 1788 .. 1765 1791 .. 0.94 38 ! 12.7 0.4 6.3e-06 0.1 2 15 .. 1799 1811 .. 1799 1818 .. 0.82 39 ! 12.6 19.4 6.7e-06 0.11 1 37 [. 1819 1898 .. 1819 1900 .. 0.99 40 ! 2.6 14.5 0.0091 1.5e+02 1 46 [. 1895 1940 .. 1895 1941 .. 0.57 41 ! 14.2 4.0 2.1e-06 0.034 16 38 .. 1954 1976 .. 1952 1985 .. 0.86 42 ? 2.4 0.3 0.011 1.7e+02 2 22 .. 1973 1992 .. 1972 1995 .. 0.86 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 2e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323208_1 56 LPAASPGPELSPVSLHRPSS 75 9*****************98 PP == domain 2 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323208_1 83 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 124 788********.***********************99765555 PP == domain 3 score: 25.8 bits; conditional E-value: 5.1e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323208_1 135 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 169 9***********.*******************9755 PP == domain 4 score: 13.0 bits; conditional E-value: 5.1e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323208_1 169 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 237 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323208_1 211 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 246 899********.7777777777777777555433.........333 PP == domain 6 score: 12.1 bits; conditional E-value: 9.7e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323208_1 256 PALASRWPLQ-AQLLSQDVISRPK 278 9*********.******9999995 PP == domain 7 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323208_1 305 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 333 9**.************************98 PP == domain 8 score: 19.9 bits; conditional E-value: 3.5e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323208_1 349 FGPVPVQLTATNVGPKLPQVKLSRPA 374 78889********************5 PP == domain 9 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323208_1 388 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 416 69***.**********************96 PP == domain 10 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 22 lsrpsaqLpvAsaGpklp 39 +++ sa+Lp+As G lp T323208_1 413 PGQVSACLPAASTGTALP 430 57889*********9987 PP == domain 11 score: 9.0 bits; conditional E-value: 9e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323208_1 488 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 530 55557888999.***********************998887776 PP == domain 12 score: 0.9 bits; conditional E-value: 0.029 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323208_1 525 PRRLFQAQLLPFAACPGPECP 545 789999**************7 PP == domain 13 score: 6.4 bits; conditional E-value: 0.0006 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323208_1 556 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 588 78999***************65557999*9997 PP == domain 14 score: 5.9 bits; conditional E-value: 0.00085 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323208_1 620 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 660 89999999.9***************97...5778999******** PP == domain 15 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323208_1 666 PGTALASWQALQ-AQILQK 683 9***********.999885 PP == domain 16 score: 17.3 bits; conditional E-value: 2.3e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323208_1 687 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 737 889*******************************************98555 PP == domain 17 score: 3.5 bits; conditional E-value: 0.0048 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323208_1 758 LTHTPVPKLPPVSQSRPSSS 777 5556779***********97 PP == domain 18 score: -1.9 bits; conditional E-value: 0.22 DUF4705 23 srpsaqLpvAs 33 +psa++ +As T323208_1 789 KSPSAGPAPAS 799 55666666665 PP == domain 19 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323208_1 834 LQTKLSLPVASTGQNCPQVSLSRANS 859 678899*****************976 PP == domain 20 score: 24.1 bits; conditional E-value: 1.8e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323208_1 861 LPVASAGQNRPQVSLFTPSSCL 882 8********************9 PP == domain 21 score: 12.2 bits; conditional E-value: 8.7e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323208_1 884 VASAGAKLPQVGLSRPS 900 8***************7 PP == domain 22 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323208_1 899 PSLLLPEGMYRPSLCLTADSPCPALP 924 678999************99999987 PP == domain 23 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323208_1 934 APAFRQLVR-AQLLPHGGLFSPNSCLL 959 9*****555.***************95 PP == domain 24 score: 6.6 bits; conditional E-value: 0.00049 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323208_1 965 SAPASHWPLE-AQLMP 979 6********9.99887 PP == domain 25 score: 22.4 bits; conditional E-value: 5.7e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323208_1 984 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1032 8***********.***************99876666667899*******9 PP == domain 26 score: 8.4 bits; conditional E-value: 0.00014 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323208_1 1024 SLCGPSSCLPVASVGQAR 1041 5667***********986 PP == domain 27 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 7 srrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s rpLqa + ++glsr+s++Lpv saGp++p++gL rPss L T323208_1 1064 SSRPLQAqlflpaasaGPDCCQVGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1116 6799999****9998866667899***************************87 PP == domain 28 score: 16.1 bits; conditional E-value: 5.6e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323208_1 1103 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1136 66899**************************975 PP == domain 29 score: 2.8 bits; conditional E-value: 0.0075 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323208_1 1125 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1170 57899***9637*********9989888888888888888888765 PP == domain 30 score: 2.1 bits; conditional E-value: 0.012 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323208_1 1155 PGLLPPEGLHRPSLSLTADSPRPAS 1179 678999********99998877765 PP == domain 31 score: 0.7 bits; conditional E-value: 0.036 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323208_1 1199 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1296 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323208_1 1297 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1325 7888*********************5543 PP == domain 32 score: 33.4 bits; conditional E-value: 2.2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323208_1 1358 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1389 589****************************9 PP == domain 33 score: 18.0 bits; conditional E-value: 1.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323208_1 1394 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1455 8***********.************************99*99999999999***********8 PP == domain 34 score: -3.2 bits; conditional E-value: 0.56 DUF4705 11 L 11 L T323208_1 1531 L 1531 2 PP == domain 35 score: -2.9 bits; conditional E-value: 0.45 DUF4705 32 AsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323208_1 1631 ATVGPADalllPELGLYRP 1649 6777765556699***999 PP == domain 36 score: -0.5 bits; conditional E-value: 0.084 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323208_1 1717 SRRPLRAQLFLPAASLGPTPaS 1738 6777788888888888887752 PP == domain 37 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323208_1 1765 PGPGQASRWPRQ-AQLLPSDGISRS 1788 9***********.********9985 PP == domain 38 score: 12.7 bits; conditional E-value: 6.3e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323208_1 1799 GPAWASRRPLQA-Q 1811 9**********4.4 PP == domain 39 score: 12.6 bits; conditional E-value: 6.7e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323208_1 1819 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1898 9***************************************************************.***************7 PP == domain 40 score: 2.6 bits; conditional E-value: 0.0091 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323208_1 1895 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 1940 9***********44444444444444444444444444444.....................44444 PP == domain 41 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323208_1 1954 LLPFGRFGRPSSCLPVASLGPAH 1976 578889***************87 PP == domain 42 score: 2.4 bits; conditional E-value: 0.011 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323208_1 1973 GPAHSSQRPFQ-APFFPSGSL 1992 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.74 # Mc/sec: 7979.40 // Query: T323208_2 [L=2064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-58 194.5 514.4 1.3e-15 57.2 9.2 45.4 39 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.0 0.00022 3.6 4 24 .. 53 73 .. 52 89 .. 0.90 2 ? -0.6 15.5 0.091 1.5e+03 7 36 .. 130 158 .. 103 159 .. 0.73 3 ! 23.0 3.9 3.8e-09 6.1e-05 1 31 [. 156 185 .. 156 198 .. 0.88 4 ! 16.2 2.8 5.1e-07 0.0082 1 35 [. 199 232 .. 199 241 .. 0.90 5 ! 44.0 11.0 1e-15 1.7e-11 1 50 [] 243 291 .. 243 291 .. 0.99 6 ! 23.1 0.8 3.5e-09 5.7e-05 28 50 .] 290 312 .. 289 312 .. 0.97 7 ? -1.2 12.0 0.13 2.2e+03 20 41 .. 388 414 .. 317 417 .. 0.88 8 ? 0.7 3.4 0.034 5.6e+02 5 26 .. 418 438 .. 418 439 .. 0.94 9 ! 16.9 1.7 3e-07 0.005 2 36 .. 477 510 .. 477 510 .. 0.98 10 ? -4.6 18.6 1 1.6e+04 1 39 [. 508 570 .. 508 599 .. 0.61 11 ? 2.1 7.6 0.012 2e+02 1 50 [] 560 620 .. 560 620 .. 0.78 12 ! 3.8 0.2 0.0038 62 16 37 .. 619 640 .. 618 650 .. 0.82 13 ! 2.6 14.2 0.0089 1.4e+02 2 33 .. 656 718 .. 656 718 .. 0.85 14 ! 24.6 3.3 1.2e-09 2e-05 2 35 .. 720 752 .. 720 756 .. 0.93 15 ! 4.8 0.8 0.0019 31 28 49 .. 766 787 .. 759 787 .. 0.88 16 ! 13.0 6.4 5e-06 0.082 10 48 .. 791 838 .. 789 839 .. 0.97 17 ? 1.9 0.8 0.015 2.4e+02 8 27 .. 841 860 .. 839 877 .. 0.60 18 ! 9.5 1.0 6.2e-05 1 3 29 .. 878 904 .. 876 907 .. 0.90 19 ! 14.6 1.4 1.6e-06 0.026 1 30 [. 908 936 .. 908 939 .. 0.96 20 ? 0.7 4.7 0.036 5.8e+02 18 50 .] 943 979 .. 940 979 .. 0.80 21 ! 9.7 3.3 5.5e-05 0.9 8 43 .. 980 1014 .. 979 1019 .. 0.89 22 ! 20.4 15.6 2.5e-08 0.0004 2 49 .. 1027 1073 .. 1026 1073 .. 0.94 23 ? -2.0 0.0 0.24 3.9e+03 7 15 .. 1074 1081 .. 1074 1086 .. 0.81 24 ! 10.1 0.6 4e-05 0.66 1 15 [. 1089 1102 .. 1089 1109 .. 0.82 25 ! 20.9 14.2 1.7e-08 0.00027 1 39 [. 1110 1160 .. 1110 1163 .. 0.93 26 ! 24.3 25.1 1.5e-09 2.5e-05 1 50 [] 1164 1247 .. 1164 1247 .. 0.95 27 ! 8.7 7.5 0.00011 1.9 29 50 .] 1247 1268 .. 1245 1268 .. 0.96 28 ! 21.1 2.9 1.5e-08 0.00024 17 50 .] 1268 1301 .. 1268 1301 .. 0.96 29 ! 57.2 9.2 7.9e-20 1.3e-15 1 50 [] 1306 1353 .. 1306 1353 .. 0.99 30 ? -3.0 8.3 0.51 8.3e+03 5 50 .] 1354 1410 .. 1354 1410 .. 0.71 31 ? 0.1 15.5 0.055 9e+02 5 50 .] 1387 1444 .. 1383 1444 .. 0.78 32 ? -4.2 2.2 1 1.6e+04 6 24 .. 1481 1518 .. 1480 1546 .. 0.58 33 ? -2.5 0.6 0.34 5.6e+03 4 11 .. 1556 1563 .. 1556 1579 .. 0.79 34 ! 2.8 0.9 0.0076 1.2e+02 8 27 .. 1707 1725 .. 1704 1727 .. 0.87 35 ! 11.3 10.6 1.7e-05 0.27 14 48 .. 1766 1812 .. 1761 1813 .. 0.74 36 ? -5.9 12.4 1 1.6e+04 9 45 .. 1816 1861 .. 1815 1866 .. 0.62 37 ? -5.1 14.3 1 1.6e+04 7 46 .. 1866 1918 .. 1864 1921 .. 0.80 38 ? -0.8 3.0 0.1 1.7e+03 16 34 .. 1932 1950 .. 1918 1956 .. 0.62 39 ! 22.7 3.2 4.8e-09 7.8e-05 2 36 .. 1962 1995 .. 1961 2002 .. 0.91 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00022 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323208_2 53 APTSRQPLQAQNFLQSASTDQ 73 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.091 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323208_2 130 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 158 345555.**********************9 PP == domain 3 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323208_2 156 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 185 9***********.*****************9 PP == domain 4 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323208_2 199 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 232 57*******9996..7*******************9 PP == domain 5 score: 44.0 bits; conditional E-value: 1e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323208_2 243 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 291 8***********.************************************9 PP == domain 6 score: 23.1 bits; conditional E-value: 3.5e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323208_2 290 CLLVAYEGPKSPQVDLSRPSSCL 312 9*********************9 PP == domain 7 score: -1.2 bits; conditional E-value: 0.13 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323208_2 388 NSLCRPCSCLPGASPGPALaswrlPQA 414 5799*************9965555555 PP == domain 8 score: 0.7 bits; conditional E-value: 0.034 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323208_2 418 PACQQPQQ-AQLFPHSGPFRPN 438 9*******.*********9996 PP == domain 9 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323208_2 477 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 510 59*********.**********************9 PP == domain 10 score: -4.6 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323208_2 508 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 570 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 11 score: 2.1 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323208_2 560 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 620 789999999646557888895555444455679***********99999999999999887 PP == domain 12 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323208_2 619 SLPHSILRKLSICLTVASPGHE 640 67888888889*********87 PP == domain 13 score: 2.6 bits; conditional E-value: 0.0089 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323208_2 656 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 718 9**********9999999999999999999998888888888888888888888888888776 PP == domain 14 score: 24.6 bits; conditional E-value: 1.2e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323208_2 720 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 752 89*********.*******************985 PP == domain 15 score: 4.8 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323208_2 766 FLQSASPGQALPPKGFCRPKSS 787 6888***************997 PP == domain 16 score: 13.0 bits; conditional E-value: 5e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323208_2 791 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 838 9*********************************************98 PP == domain 17 score: 1.9 bits; conditional E-value: 0.015 DUF4705 8 rrpLqapaslqasglsrpsa 27 ++pLqa l++ +++ +++ T323208_2 841 QWPLQAKIVLKSASPGPTPS 860 56666544455555554443 PP == domain 18 score: 9.5 bits; conditional E-value: 6.2e-05 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323208_2 878 PALVCKWPLQEQNCLKSASPGPASCFP 904 9**********9*******99998776 PP == domain 19 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323208_2 908 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 936 8***********.****************9 PP == domain 20 score: 0.7 bits; conditional E-value: 0.036 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323208_2 943 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 979 56777788888888886656779999**********8 PP == domain 21 score: 9.7 bits; conditional E-value: 5.5e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323208_2 980 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1014 57777.999**********************98877 PP == domain 22 score: 20.4 bits; conditional E-value: 2.5e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323208_2 1027 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1073 9********995..4689999**************************97 PP == domain 23 score: -2.0 bits; conditional E-value: 0.24 DUF4705 7 srrpLqapa 15 srrpLq ++ T323208_2 1074 SRRPLQ-AQ 1081 79****.66 PP == domain 24 score: 10.1 bits; conditional E-value: 4e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323208_2 1089 PGPAPASRCPLQA-Q 1102 9***********4.4 PP == domain 25 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323208_2 1110 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1160 9*******************************9.89**********876666 PP == domain 26 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323208_2 1164 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1247 8*********************************************6515699*****************************98 PP == domain 27 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323208_2 1247 LPASSPGPALPPGCVSRPDCCL 1268 9********************9 PP == domain 28 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323208_2 1268 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1301 6889****************************87 PP == domain 29 score: 57.2 bits; conditional E-value: 7.9e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323208_2 1306 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1353 9*********************************************..97 PP == domain 30 score: -3.0 bits; conditional E-value: 0.51 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323208_2 1354 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1410 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 31 score: 0.1 bits; conditional E-value: 0.055 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323208_2 1387 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1444 599*****888888888876665555556677889999999888886799999*9998 PP == domain 32 score: -4.2 bits; conditional E-value: 1 DUF4705 6 asrrpLqa...................paslqasglsr 24 as+rpL p++l +g s T323208_2 1481 ASHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1518 56666655555555555555555555566666666653 PP == domain 33 score: -2.5 bits; conditional E-value: 0.34 DUF4705 4 APasrrpL 11 A as++pL T323208_2 1556 ALASHWPL 1563 89*****9 PP == domain 34 score: 2.8 bits; conditional E-value: 0.0076 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323208_2 1707 ARPLQ-THLQPPGVLSGPSS 1725 69***.99999999999987 PP == domain 35 score: 11.3 bits; conditional E-value: 1.7e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323208_2 1766 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1812 555699*******************6666666666666666666666 PP == domain 36 score: -5.9 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323208_2 1816 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1861 7888.666666654222222277778886577888865558888888 PP == domain 37 score: -5.1 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323208_2 1866 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1918 67999998888644344444678999999999999999999999999999999 PP == domain 38 score: -0.8 bits; conditional E-value: 0.1 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323208_2 1932 SLTADSPRPASSRLTAASP 1950 4566666666667766664 PP == domain 39 score: 22.7 bits; conditional E-value: 4.8e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323208_2 1962 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1995 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.72 # Mc/sec: 8201.05 // Query: T323208_3 [L=2063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-81 267.0 488.8 3.5e-17 62.2 8.0 43.9 43 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.2 0.16 2.7e+03 38 47 .. 54 63 .. 53 67 .. 0.81 2 ? -0.2 0.1 0.066 1.1e+03 8 35 .. 67 93 .. 62 96 .. 0.86 3 ! 34.4 7.0 1e-12 1.7e-08 3 49 .. 94 139 .. 92 140 .. 0.96 4 ! 31.0 7.0 1.2e-11 2e-07 1 38 [. 145 181 .. 145 191 .. 0.93 5 ! 24.0 4.7 1.8e-09 3e-05 5 38 .. 192 224 .. 186 233 .. 0.92 6 ! 22.7 6.2 4.6e-09 7.4e-05 5 38 .. 236 268 .. 235 270 .. 0.95 7 ! 10.8 3.2 2.5e-05 0.41 1 34 [. 264 292 .. 264 303 .. 0.77 8 ! 22.6 16.3 4.9e-09 8e-05 1 49 [. 306 353 .. 306 354 .. 0.99 9 ! 9.0 1.7 8.9e-05 1.5 8 40 .. 367 398 .. 365 401 .. 0.84 10 ! 11.1 12.5 1.9e-05 0.32 2 34 .. 392 423 .. 391 451 .. 0.59 11 ! 13.0 0.5 4.9e-06 0.08 16 35 .. 479 498 .. 472 499 .. 0.92 12 ! 31.4 8.9 9.3e-12 1.5e-07 2 50 .] 498 545 .. 497 545 .. 0.97 13 ? -1.6 0.1 0.19 3e+03 9 25 .. 547 572 .. 546 575 .. 0.56 14 ? 0.1 2.6 0.055 8.9e+02 1 33 [. 593 625 .. 593 627 .. 0.91 15 ! 15.1 6.5 1.1e-06 0.018 4 44 .. 629 686 .. 629 692 .. 0.97 16 ! 9.9 0.1 4.7e-05 0.77 14 37 .. 720 743 .. 711 748 .. 0.88 17 ! 24.1 2.8 1.7e-09 2.8e-05 18 50 .] 766 798 .. 744 798 .. 0.83 18 ! 4.8 0.8 0.0019 30 28 47 .. 828 847 .. 820 850 .. 0.85 19 ? 1.7 1.1 0.017 2.7e+02 7 27 .. 850 869 .. 848 874 .. 0.91 20 ? -0.4 0.1 0.077 1.3e+03 7 24 .. 871 887 .. 869 890 .. 0.87 21 ! 9.5 9.3 6.1e-05 1 6 38 .. 891 933 .. 887 939 .. 0.89 22 ! 10.4 6.3 3.3e-05 0.53 1 33 [. 941 972 .. 941 972 .. 0.95 23 ! 3.6 2.7 0.0042 68 19 43 .. 979 1004 .. 977 1007 .. 0.80 24 ! 15.0 13.5 1.2e-06 0.02 1 38 [. 994 1051 .. 994 1059 .. 0.87 25 ? 2.2 14.0 0.012 2e+02 1 49 [. 1047 1104 .. 1047 1105 .. 0.95 26 ? -1.1 7.4 0.13 2.1e+03 7 40 .. 1126 1157 .. 1124 1157 .. 0.79 27 ? 2.2 9.3 0.012 1.9e+02 3 26 .. 1155 1177 .. 1146 1177 .. 0.93 28 ! 15.2 1.9 1e-06 0.017 14 36 .. 1188 1210 .. 1182 1215 .. 0.91 29 ? 2.1 0.1 0.013 2e+02 27 39 .. 1213 1225 .. 1211 1227 .. 0.90 30 ! 5.6 12.0 0.0011 17 1 38 [. 1220 1266 .. 1220 1273 .. 0.85 31 ! 16.1 2.3 5.6e-07 0.0091 1 26 [. 1295 1319 .. 1295 1321 .. 0.95 32 ? -1.4 4.4 0.16 2.6e+03 1 29 [. 1328 1366 .. 1328 1371 .. 0.77 33 ? 1.3 8.0 0.023 3.8e+02 7 46 .. 1378 1421 .. 1373 1423 .. 0.83 34 ? -4.0 4.7 1 1.6e+04 10 39 .. 1413 1439 .. 1412 1449 .. 0.53 35 ? -3.9 3.2 0.97 1.6e+04 7 14 .. 1498 1523 .. 1492 1556 .. 0.56 36 ! 13.1 9.9 4.6e-06 0.074 17 50 .] 1704 1737 .. 1682 1737 .. 0.85 37 ! 27.5 3.3 1.4e-10 2.4e-06 17 50 .] 1737 1770 .. 1736 1770 .. 0.96 38 ! 62.2 8.0 2.1e-21 3.5e-17 1 50 [] 1775 1824 .. 1775 1824 .. 0.99 39 ! 12.1 0.9 9.3e-06 0.15 25 44 .. 1820 1839 .. 1819 1840 .. 0.91 40 ! 10.5 5.2 3.1e-05 0.51 24 49 .. 1851 1875 .. 1845 1876 .. 0.80 41 ! 3.9 2.0 0.0035 57 26 39 .. 1874 1889 .. 1873 1898 .. 0.73 42 ? 2.4 0.7 0.01 1.7e+02 29 50 .] 1900 1922 .. 1900 1922 .. 0.86 43 ! 21.4 13.5 1.2e-08 0.00019 1 39 [. 1927 1987 .. 1927 1994 .. 0.95 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.16 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323208_3 54 LPPGSLSRPR 63 6889999985 PP == domain 2 score: -0.2 bits; conditional E-value: 0.066 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaG 35 +p q + ++ ++gl rp+ L++ sa+ T323208_3 67 SQPPQ-TKLMTHNGLFRPIPYLTAVSAD 93 67778.999**********999998875 PP == domain 3 score: 34.4 bits; conditional E-value: 1e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323208_3 94 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 139 689*******.************************************ PP == domain 4 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323208_3 145 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 181 9***********.***********************86 PP == domain 5 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323208_3 192 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 224 899*****.***********************98 PP == domain 6 score: 22.7 bits; conditional E-value: 4.6e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323208_3 236 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 268 9*******.***********************86 PP == domain 7 score: 10.8 bits; conditional E-value: 2.5e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323208_3 264 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 292 9***********5444.....4446888888887 PP == domain 8 score: 22.6 bits; conditional E-value: 4.9e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323208_3 306 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 353 9***********.************************************ PP == domain 9 score: 9.0 bits; conditional E-value: 8.9e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323208_3 367 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 398 57799..889999****************99544 PP == domain 10 score: 11.1 bits; conditional E-value: 1.9e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323208_3 392 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 423 9**********.666666666666666666553 PP == domain 11 score: 13.0 bits; conditional E-value: 4.9e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323208_3 479 PLPHSGPSRPRWCLTVASSG 498 69****************98 PP == domain 12 score: 31.4 bits; conditional E-value: 9.3e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323208_3 498 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 545 89*********.*********************************9887 PP == domain 13 score: -1.6 bits; conditional E-value: 0.19 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323208_3 547 RRLQDelilpvrlqARLLPHNNLLWS 572 56666666633333666666666555 PP == domain 14 score: 0.1 bits; conditional E-value: 0.055 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323208_3 593 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 625 89999*******888999999999999999988 PP == domain 15 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323208_3 629 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 686 88******************************************************97 PP == domain 16 score: 9.9 bits; conditional E-value: 4.7e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323208_3 720 AKLLPFGSLYRPSSCLAIAFVGQD 743 67899999**************95 PP == domain 17 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323208_3 766 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 798 455566899***********************9 PP == domain 18 score: 4.8 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323208_3 828 LLQLASPDQALPPSGLYRPK 847 6889***************6 PP == domain 19 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323208_3 850 SSQPLQ-GQLLATGGFCRPKS 869 689***.***********986 PP == domain 20 score: -0.4 bits; conditional E-value: 0.077 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323208_3 871 SSQPLH-TQLLSVSGLCR 887 78****.*****999866 PP == domain 21 score: 9.5 bits; conditional E-value: 6.1e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323208_3 891 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 933 788999999999999999********************99888 PP == domain 22 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323208_3 941 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 972 8***********.*****9999999******98 PP == domain 23 score: 3.6 bits; conditional E-value: 0.0042 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323208_3 979 SRGLNGPSPCLSAASTGPAStSQWAL 1004 78999999999999999976566555 PP == domain 24 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323208_3 994 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1051 688888888888888888888888888888888**********************876 PP == domain 25 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323208_3 1047 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1104 89999999*************9899******************************997 PP == domain 26 score: -1.1 bits; conditional E-value: 0.13 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323208_3 1126 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 1157 679***777899******98..667777777765 PP == domain 27 score: 2.2 bits; conditional E-value: 0.012 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323208_3 1155 RPPASRRPAQ-AQPQPHSGLSTPS 1177 66********.************7 PP == domain 28 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323208_3 1188 PKLLPLGRFGRPSSRLPVASSGP 1210 8999******************9 PP == domain 29 score: 2.1 bits; conditional E-value: 0.013 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323208_3 1213 SFLTTAFPGPVFP 1225 79*********97 PP == domain 30 score: 5.6 bits; conditional E-value: 0.0011 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323208_3 1220 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1266 7888889**************766651678***************86 PP == domain 31 score: 16.1 bits; conditional E-value: 5.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323208_3 1295 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1319 9***********.9***********7 PP == domain 32 score: -1.4 bits; conditional E-value: 0.16 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323208_3 1328 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1366 8899998.77799988888888888888877776666666 PP == domain 33 score: 1.3 bits; conditional E-value: 0.023 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323208_3 1378 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1421 567799.9**********************997776446666655 PP == domain 34 score: -4.0 bits; conditional E-value: 1 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323208_3 1413 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1439 899.5555555..33444444455555442 PP == domain 35 score: -3.9 bits; conditional E-value: 0.97 DUF4705 7 srrpLqa..................p 14 s++pL + T323208_3 1498 SHWPLAShwplpr*qrsv*apcltlA 1523 55555334444445555555555552 PP == domain 36 score: 13.1 bits; conditional E-value: 4.6e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323208_3 1704 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1737 45568**************************987 PP == domain 37 score: 27.5 bits; conditional E-value: 1.4e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323208_3 1737 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1770 8999****************************87 PP == domain 38 score: 62.2 bits; conditional E-value: 2.1e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323208_3 1775 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1824 9***********************************************98 PP == domain 39 score: 12.1 bits; conditional E-value: 9.3e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323208_3 1820 SSSSLPAASAGLSCPQVGLE 1839 6899**************96 PP == domain 40 score: 10.5 bits; conditional E-value: 3.1e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323208_3 1851 GPSSV-LLASPGAKLPRVSLSRPSSS 1875 45555.579***************97 PP == domain 41 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323208_3 1874 SSCLPVASFGPAQlmA 1889 89*********86443 PP == domain 42 score: 2.4 bits; conditional E-value: 0.01 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323208_3 1900 LLVASSGPELdLQSAFAGPASCL 1922 789*******8677888999998 PP == domain 43 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323208_3 1927 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1987 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.67 # Mc/sec: 8808.79 // Query: T184391_1 [L=8717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 8.5 12.3 1.8 7.8 12.3 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.3 0.00011 1.8 181 207 .. 4591 4617 .. 4561 4640 .. 0.60 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00011 SelP_N 181 ktehehahshkqghkhhekhghhHkek 207 + +++h+h++ h+hh +h+hhH+++ T184391_1 4591 PPPSPSPHHHTHHHQHHPHHHHHHHHH 4617 333444555555555555555555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 960 (0.058874); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.74u 0.50s 00:00:04.24 Elapsed: 00:00:01.00 # Mc/sec: 24937.86 // Query: T184391_2 [L=8717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.78u 0.48s 00:00:03.26 Elapsed: 00:00:01.03 # Mc/sec: 24211.51 // Query: T184391_3 [L=8717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 684 (0.0419477); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.14u 0.56s 00:00:04.69 Elapsed: 00:00:01.13 # Mc/sec: 21875.31 // Query: T001696_1 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.75 # Mc/sec: 6137.43 // Query: T001696_2 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.78 # Mc/sec: 5897.71 // Query: T001696_3 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.1 0.0 0.39 10.6 0.0 1.7 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 2.4e-05 0.39 27 82 .. 634 691 .. 630 701 .. 0.78 2 ? -2.7 0.0 0.32 5.2e+03 4 23 .. 853 872 .. 852 879 .. 0.84 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 2.4e-05 HHHHCCGGSH.HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 27 eakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 ++++ ++ + +gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001696_3 634 PSRPEARAHPpLCPGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 691 55566665567789********************853788888888877777777765 PP == domain 2 score: -2.7 bits; conditional E-value: 0.32 HHTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 4 IengklGevvsvdvwtldtr 23 ++ g++G++ +++ w+ + + T001696_3 853 LRRGSIGKPCMFHFWFNQAF 872 6789*********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.80 # Mc/sec: 5750.27 // Query: T317177_1 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 328 (0.0201153); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 4340.57 // Query: T317177_2 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4416.72 // Query: T317177_3 [L=879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 3991.54 // Query: T358358_1 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 6556.46 // Query: T358358_2 [L=1397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 6773.86 // Query: T358358_3 [L=1397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-24 85.4 0.0 5.2e-24 84.7 0.0 1.3 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.7 0.0 3.2e-28 5.2e-24 2 92 .. 884 978 .. 883 988 .. 0.89 Alignments for each domain: == domain 1 score: 84.7 bits; conditional E-value: 3.2e-28 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssk 92 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p+ + T358358_3 884 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIPQWA 978 7****************************97765324444559*******************************.***************999444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 6890.65 // Query: T228495_1 [L=1416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 537 (0.0329327); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 6865.99 // Query: T228495_2 [L=1416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 6430.06 // Query: T228495_3 [L=1415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 541 (0.033178); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 6861.14 // Query: T162401_1 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2645.01 // Query: T162401_2 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 2692.25 // Query: T162401_3 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2692.25 // Query: T315360_1 [L=8214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.41s 00:00:02.15 Elapsed: 00:00:00.71 # Mc/sec: 33096.98 // Query: T315360_2 [L=8214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.36s 00:00:02.13 Elapsed: 00:00:00.71 # Mc/sec: 33096.98 // Query: T315360_3 [L=8214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.43s 00:00:02.20 Elapsed: 00:00:00.75 # Mc/sec: 31331.81 // Query: T359868_1 [L=5310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.025 14.2 0.1 3.1 7.6 0.0 3.7 3 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.12 2e+03 13 26 .. 433 446 .. 424 446 .. 0.81 2 ? 7.6 0.0 0.00019 3.1 7 31 .. 536 560 .. 536 560 .. 0.93 3 ? 1.7 0.0 0.014 2.2e+02 19 33 .. 1140 1154 .. 1140 1156 .. 0.68 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.12 TEEEETTEEE-TTE CS Hexapep 13 faviggnVkIGdnv 26 +++++++V +G+++ T359868_1 433 GVHLRPDVCLGPDC 446 79999999999998 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00019 TEEE-TTEEEETTEEE-TTEEEETT CS Hexapep 7 nvlIgpfaviggnVkIGdnvkIgag 31 +v+++p +++ ++V++G +v++ +g T359868_1 536 DVHLWPRVHLVPDVHLGHGVHLRPG 560 6899*****************9986 PP == domain 3 score: 1.7 bits; conditional E-value: 0.014 TEEE-TTEEEETTEE CS Hexapep 19 nVkIGdnvkIgagvv 33 +V++G++v I agv T359868_1 1140 GVHLGPDVQIRAGVL 1154 577777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 21395.78 // Query: T359868_2 [L=5310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0017 17.7 0.0 0.0029 17.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.025 14.1 0.1 66 3.3 0.0 4.8 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 3.6e-07 0.0029 132 168 .. 5114 5159 .. 5112 5168 .. 0.77 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 3.6e-07 --ST-TTHHHHHHHHHHHHHTT-T...............TEEECTT CS RVT_1 132 lpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaD 168 ++qG++lSPllfn++++ l + +r++ k+v+l++ +D T359868_2 5114 TRQGCPLSPLLFNIVLEVLAKTVRQEKeikgtqigrKDVKLSLSVD 5159 89**********************9877766666666666655555 PP >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.39 3.2e+03 6 20 .. 480 494 .. 479 494 .. 0.56 2 ? 3.3 0.0 0.0081 66 4 24 .. 740 760 .. 737 768 .. 0.63 3 ? 2.5 0.1 0.015 1.2e+02 13 29 .. 877 893 .. 875 894 .. 0.83 4 ? 1.3 0.0 0.036 3e+02 10 32 .. 1855 1877 .. 1842 1881 .. 0.52 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.39 TTEEE-TTEEEETTE CS Hexapep 6 snvlIgpfaviggnV 20 s+v++gp +++g+ + T359868_2 480 SGVQLGPAVHLGPWC 494 556666666666654 PP == domain 2 score: 3.3 bits; conditional E-value: 0.0081 E-TTEEE-TTEEEETTEEE-T CS Hexapep 4 IGsnvlIgpfaviggnVkIGd 24 + +v++gp++++++++ + T359868_2 740 LRPDVQLGPGVHLRHDAYLKL 760 456777888888888776655 PP == domain 3 score: 2.5 bits; conditional E-value: 0.015 TEEEETTEEE-TTEEEE CS Hexapep 13 faviggnVkIGdnvkIg 29 +++g+ V+IG++v ++ T359868_2 877 SVYLGSSVHIGSDVNLE 893 689999******99875 PP == domain 4 score: 1.3 bits; conditional E-value: 0.036 E-TTEEEETTEEE-TTEEEETTE CS Hexapep 10 IgpfaviggnVkIGdnvkIgagv 32 +gp ++ g+ V++G +v +g+ v T359868_2 1855 LGPDVYSGSAVHLGQGVFLGPRV 1877 34444445555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:00.70 # Mc/sec: 21701.44 // Query: T359868_3 [L=5309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.062 12.9 0.0 16 5.2 0.0 3.3 3 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.14 2.3e+03 10 26 .. 807 823 .. 804 824 .. 0.62 2 ? 5.2 0.0 0.001 16 14 32 .. 902 920 .. 899 921 .. 0.62 3 ? 3.5 0.0 0.0036 59 12 32 .. 1120 1140 .. 1117 1140 .. 0.89 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.14 E-TTEEEETTEEE-TTE CS Hexapep 10 IgpfaviggnVkIGdnv 26 ++p++ +g+ V +G++v T359868_3 807 LWPNVLLGSSVLLGPDV 823 56666666666666666 PP == domain 2 score: 5.2 bits; conditional E-value: 0.001 EEEETTEEE-TTEEEETTE CS Hexapep 14 aviggnVkIGdnvkIgagv 32 +++g++V +G++v +++g+ T359868_3 902 VQLGPDVRLGPGVNLEHGC 920 5666666666666666665 PP == domain 3 score: 3.5 bits; conditional E-value: 0.0036 TTEEEETTEEE-TTEEEETTE CS Hexapep 12 pfaviggnVkIGdnvkIgagv 32 +++++ ++V +G++v+ ++g+ T359868_3 1120 AGVHLESHVYLGPDVHMEPGS 1140 799************999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.70 # Mc/sec: 21697.35 // Query: T137316_1 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.39 9.3 20.9 0.49 8.9 20.9 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 20.9 3e-05 0.49 129 285 .. 256 403 .. 216 532 .. 0.53 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 3e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 129 esekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdk..ekekkkekssksesgkeeerskdeerekeadk 226 +++ +r +++++++ + k ++ +++k+ + ++++ ++ + + k + ++ + dk +++ + +++ + ++ +++ + + ++ ++++ T137316_1 256 QTSTHRHRQNHKHT----------QTKPQTCAHTQTKPHRHAQTQTKPHTHTQTKAHRDTCTHTDKttQTHTDTDTHTHTDKTTQRHVHTQTKPHRHTHT 345 11111111111111..........2222222222222222222222222222222211111111111111222222222222222222222222222222 PP XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 227 gkdretn.rateeeeesrkssekkrrssksekkeqsegeqskkseqktektskveaeqea 285 + ++ + +a +++ ++r+ + k r+++ + k+ + ++ +++te + ++++++++ T137316_1 346 QTKPHRFtHAHTDKTTQRHTQTKPHRHKHTQTKPHR--HMHTHGKKHTETHTQTKPHRDT 403 222222111111222222222222222222222221..1111111111111112222211 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1357 (0.0832209); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 4748.12 // Query: T137316_2 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.2 5.8 31.9 5.2 5.5 31.9 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 31.9 0.00032 5.2 127 291 .. 245 408 .. 216 469 .. 0.43 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.00032 XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 127 ekesekerkqkeel.kekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdk.ekekkkekssksesgkeeerskdeerekea 224 +++ + k++ ++ + + +++ +++ ++++ +++++ +++r r+ + + ++k + +++ + +++++ +++ + + +++r+ +r++++ T137316_2 245 QTRTHTQTKPHRQAhTDTDKTTNTHRQNHRHVHTHRQNHTDTHRHRQNHTRT-HRQK---HTETRAHTQtKPHRHTQTQTRTHTQTKPHRDTCTHRQNHT 340 1111111111111112222223333333333333333333333333222222.1111...1122222222444444444444444444444444444444 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 225 dkgkdretnrateeeeesrkssekkrrssksekkeqse.geqskkseqktektskveaeqeakasavk 291 d + +r++ + + + + + ++ +r++++ +++ ++ ++ e++t+++ + + +++++++++ T137316_2 341 DTHTHRQNHTDSHMHTQTKPHRDTHRQNHTDTSTHRPNhTDTCTHTEKNTQRHTHRQNHTGTHTHKTT 408 44444444433332223333333322222222222222022333333333333333333333333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1566 (0.0960383); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 112 (0.00686864); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 4480.62 // Query: T137316_3 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1812 (0.111125); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 100 (0.00613271); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.42s 00:00:01.67 Elapsed: 00:00:00.70 # Mc/sec: 4544.63 // Query: T276645_1 [L=4955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.69 # Mc/sec: 20544.08 // Query: T276645_2 [L=4954] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 11.8 0.8 8.2 3.9 0.0 3.9 5 Raffinose_syn Raffinose synthase or seed imbibition protein Domain annotation for each model (and alignments): >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.0 0.0046 75 89 116 .. 1707 1734 .. 1688 1736 .. 0.80 2 ? 3.9 0.0 0.0005 8.2 90 147 .. 1859 1914 .. 1853 1927 .. 0.70 3 ? 1.2 0.0 0.0035 57 89 120 .. 1934 1967 .. 1928 1975 .. 0.80 4 ? -2.3 0.0 0.039 6.4e+02 90 120 .. 2376 2408 .. 2371 2416 .. 0.70 5 ? -3.4 0.0 0.085 1.4e+03 89 120 .. 2560 2593 .. 2558 2597 .. 0.71 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.0046 Raffinose_syn 89 sGrdieaetqflllesksesdgedeqkv 116 s rdi++etq++ll ++ s++++++k T276645_2 1707 SSRDINKETQLVLLSVTKASSPDNNKKI 1734 4689999999999999988888887765 PP == domain 2 score: 3.9 bits; conditional E-value: 0.0005 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPlleGsfraslqggekdeveiclesG 147 rdi++etq++ l ++ s+ + +++++ vll + Gs r + e + v++ + G T276645_2 1859 SRDINKETQLVPLSVTKASSRDINKETHLVLLSVTKGSSRDI--SKETQLVLLSVTKG 1914 578888888888888888888888888888888888887765..33444455555444 PP == domain 3 score: 1.2 bits; conditional E-value: 0.0035 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 s rdi+ etq++l+ ++ s+ ++e+++y +l T276645_2 1934 SSRDINRETQLVLVSVTKASSCdiDKETQSYLLL 1967 679***********99955555348888888765 PP == domain 4 score: -2.3 bits; conditional E-value: 0.039 Raffinose_syn 90 Grdieaetqflllesksesdg..edeqkvyvvl 120 rd ++etq++ll ++ s+ ++e++++ +l T276645_2 2376 SRDFNKETQLVLLSVTKASSHdiNKETESFYLL 2408 48************9966665234455555444 PP == domain 5 score: -3.4 bits; conditional E-value: 0.085 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 + rdi++et ++ll ++ s+ ++e++++ +l T276645_2 2560 NSRDINKETHLVLLSVTKASSRdiSKETQSFYLL 2593 679***********99966655235555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4954 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.32s 00:00:01.67 Elapsed: 00:00:00.67 # Mc/sec: 21153.06 // Query: T276645_3 [L=4954] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0021 15.8 0.3 3 5.4 0.0 3.9 4 Raffinose_syn Raffinose synthase or seed imbibition protein 0.0028 16.5 0.1 13 4.4 0.0 4.7 5 DUF759 Borrelia burgdorferi protein of unknown functi Domain annotation for each model (and alignments): >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.4 0.0 0.00037 3 89 130 .. 1614 1655 .. 1609 1681 .. 0.83 2 ! 4.7 0.0 0.00057 4.7 92 147 .. 1786 1839 .. 1776 1854 .. 0.67 3 ? -1.3 0.0 0.039 3.2e+02 91 129 .. 2175 2213 .. 2168 2220 .. 0.85 4 ? -1.4 0.0 0.041 3.3e+02 90 124 .. 2505 2539 .. 2500 2546 .. 0.87 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.00037 Raffinose_syn 89 sGrdieaetqflllesksesdgedeqkvyvvllPlleGsfra 130 s rdi++etq++ll ++ s+ + ++++ vll + Gs r T276645_3 1614 SSRDINKETQLVLLSVTKGSSRDINKETQLVLLSVTKGSSRD 1655 578999999999999999999999999999999999998875 PP == domain 2 score: 4.7 bits; conditional E-value: 0.00057 Raffinose_syn 92 dieaetqflllesksesdgedeqkvyvvllPlleGsfraslqggekdeveiclesG 147 di++etqf+ll + s + ++++ vll + Gs r q e + v++ + G T276645_3 1786 DINKETQFVLLSVIKGSPRDINKETQSVLLSVTKGSSRDISQ--ETHLVLLSVTKG 1839 777777777777777777777777777777777777776543..333444444444 PP == domain 3 score: -1.3 bits; conditional E-value: 0.039 Raffinose_syn 91 rdieaetqflllesksesdgedeqkvyvvllPlleGsfr 129 di++et ++ll ++ s+ + +++++ vll + + s r T276645_3 2175 CDINKETHLVLLSVTKASSCDINKETHLVLLSVTNASSR 2213 49*************99999*********9998877766 PP == domain 4 score: -1.4 bits; conditional E-value: 0.041 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPll 124 r i++etq++ll ++ s+ + +++++ vll + T276645_3 2505 SRGINKETQLVLLSFTKASSRDINKESHLVLLSVT 2539 5789************99999*******9999765 PP >> DUF759 Borrelia burgdorferi protein of unknown function (DUF759) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.4 0.0 0.0016 13 197 234 .. 1619 1657 .. 1605 1679 .. 0.75 2 ? 1.3 0.0 0.014 1.1e+02 204 234 .. 1796 1826 .. 1777 1848 .. 0.63 3 ? -1.9 0.0 0.13 1e+03 201 234 .. 2035 2068 .. 2027 2081 .. 0.80 4 ? 0.8 0.0 0.02 1.6e+02 196 234 .. 2306 2344 .. 2300 2351 .. 0.89 5 ! 2.2 0.0 0.0073 60 201 234 .. 2642 2675 .. 2634 2689 .. 0.87 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.0016 DUF759 197 dkekkg.lldgmkgferdlekeeflnqasvfkgtlrdld 234 +ke++ ll kg rd++ke l sv kg+ rd++ T276645_3 1619 NKETQLvLLSVTKGSSRDINKETQLVLLSVTKGSSRDIN 1657 455554145577888999999999988999999888875 PP == domain 2 score: 1.3 bits; conditional E-value: 0.014 DUF759 204 ldgmkgferdlekeeflnqasvfkgtlrdld 234 l +kg rd++ke sv kg+ rd+ T276645_3 1796 LSVIKGSPRDINKETQSVLLSVTKGSSRDIS 1826 4466666666666666666666666666653 PP == domain 3 score: -1.9 bits; conditional E-value: 0.13 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l+ sv k + d++ T276645_3 2035 TVLLPVTKGGSRDINKETHLDLLSVTKASSCDIN 2068 4567789*******************99877764 PP == domain 4 score: 0.8 bits; conditional E-value: 0.02 DUF759 196 kdkekkglldgmkgferdlekeeflnqasvfkgtlrdld 234 +ke++ +l k d++ke l sv kg+ rdl T276645_3 2306 INKETHLVLSVTKASSCDINKETHLVLLSVTKGSSRDLS 2344 5789999999***************************96 PP == domain 5 score: 2.2 bits; conditional E-value: 0.0073 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l sv kg+ rd+ T276645_3 2642 TVLLSVTKGGSRDINKETHLVLLSVTKGSSRDIS 2675 4578889************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4954 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.65u 0.46s 00:00:02.11 Elapsed: 00:00:00.88 # Mc/sec: 16105.17 // Query: T125934_1 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.68 # Mc/sec: 5132.67 // Query: T125934_2 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 5453.46 // Query: T125934_3 [L=1219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 6579.91 // Query: T022834_1 [L=921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 4319.38 // Query: T022834_2 [L=920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.38 10.1 2.6 0.7 9.2 0.1 2.0 2 DUF4366 Domain of unknown function (DUF4366) Domain annotation for each model (and alignments): >> DUF4366 Domain of unknown function (DUF4366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.1 4.3e-05 0.7 167 212 .. 406 451 .. 380 455 .. 0.78 2 ? 0.3 0.6 0.022 3.6e+02 145 160 .. 737 752 .. 724 776 .. 0.47 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 4.3e-05 DUF4366 167 eeeekekkkekgasgllllllvlallgvGGgafyyfkvykpkkkak 212 ++ + ++k+ +++ +l +v+ +l+v G+++y++k++k+k ++k T022834_2 406 AQGTGSHKQDMARLLPGILGAVVGVLLVLGAGLYLLKKKKKKMERK 451 5556677888888888888899999999999*********998875 PP == domain 2 score: 0.3 bits; conditional E-value: 0.022 DUF4366 145 msectgketepeaept 160 ++++t+k+++++++++ T022834_2 737 KQKKTKKKNKNQQTKQ 752 1111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1104 (0.0677051); expected 326.1 (0.02) Passed bias filter: 684 (0.0419477); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.42s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 3605.43 // Query: T022834_3 [L=920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 865 (0.053048); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 3987.82 // Query: T124685_1 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 3576.04 // Query: T124685_2 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 4025.97 // Query: T124685_3 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 3459.82 // Query: T094010_1 [L=1214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.092 13.0 8.7 0.19 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.19 8 50 .. 680 722 .. 679 729 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094010_1 680 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 722 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 762 (0.0467313); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.74 # Mc/sec: 4693.31 // Query: T094010_2 [L=1214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 239 (0.0146572); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 5988.01 // Query: T094010_3 [L=1213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 5029.26 // Query: T368598_1 [L=8274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.73u 0.53s 00:00:03.26 Elapsed: 00:00:00.90 # Mc/sec: 26300.56 // Query: T368598_2 [L=8274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 623 (0.0382068); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.71u 0.44s 00:00:03.15 Elapsed: 00:00:00.86 # Mc/sec: 27523.85 // Query: T368598_3 [L=8274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.08u 0.54s 00:00:03.62 Elapsed: 00:00:01.24 # Mc/sec: 19089.12 // Query: T381532_1 [L=5478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.40s 00:00:02.35 Elapsed: 00:00:00.88 # Mc/sec: 17808.67 // Query: T381532_2 [L=5478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.41s 00:00:02.52 Elapsed: 00:00:00.74 # Mc/sec: 21177.87 // Query: T381532_3 [L=5477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.6 0.0 0.1 12.6 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 6.4e-06 0.1 18 53 .. 1947 1982 .. 1942 1986 .. 0.89 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.4e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381532_3 1947 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1982 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.93u 0.43s 00:00:02.36 Elapsed: 00:00:00.98 # Mc/sec: 15988.54 // Query: T022094_1 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.68 # Mc/sec: 2599.99 // Query: T022094_2 [L=617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2674.44 // Query: T022094_3 [L=617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.70 # Mc/sec: 2521.62 // Query: T278961_1 [L=162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 747.51 // Query: T278961_2 [L=162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.60 # Mc/sec: 772.42 // Query: T278961_3 [L=162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 95 (0.00582608); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 813.08 // Query: T090073_1 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 5410.48 // Query: T090073_2 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.69 # Mc/sec: 4469.53 // Query: T090073_3 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 5139.96 // Query: T082060_1 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 5555.81 // Query: T082060_2 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.76 # Mc/sec: 5044.10 // Query: T082060_3 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.65 # Mc/sec: 5897.71 // Query: T027732_1 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 2596.10 // Query: T027732_2 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 3051.55 // Query: T027732_3 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 2998.94 // Query: T259457_1 [L=2531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-10 40.2 40.0 1.2e-06 28.8 17.5 4.3 4 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 0.0094 16.4 0.9 1.1e+02 3.3 0.0 5.3 5 Caskin1-CID Caskin1 CASK-interaction domain Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 17.5 1.5e-10 1.2e-06 2 70 .. 216 288 .. 207 289 .. 0.92 2 ! 27.9 14.5 2.9e-10 2.4e-06 2 67 .. 282 351 .. 281 368 .. 0.91 3 ? -2.9 0.0 1.2 9.4e+03 14 18 .. 611 615 .. 610 620 .. 0.53 4 ? -6.1 4.8 2 1.6e+04 42 49 .. 1837 1845 .. 1793 1883 .. 0.48 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 1.5e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259457_1 216 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 288 8****************98779******99889*****985567*******9*********9988.9****976 PP == domain 2 score: 27.9 bits; conditional E-value: 2.9e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259457_1 282 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 351 8***************997669******99889*****985557*******99********8777.99999 PP == domain 3 score: -2.9 bits; conditional E-value: 1.2 CTD 14 rTPaw 18 +TPaw T259457_1 611 QTPAW 615 34444 PP == domain 4 score: -6.1 bits; conditional E-value: 2 CTD 42 akTPawd.a 49 + TP ++ T259457_1 1837 TDTPRQKvP 1845 333333331 PP >> Caskin1-CID Caskin1 CASK-interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.0 0.019 1.6e+02 35 51 .. 1748 1764 .. 1745 1766 .. 0.83 2 ? -1.1 0.0 0.32 2.6e+03 36 49 .. 1773 1786 .. 1769 1787 .. 0.78 3 ? 2.9 0.0 0.019 1.6e+02 35 51 .. 1796 1812 .. 1793 1814 .. 0.83 4 ? 3.3 0.0 0.014 1.1e+02 35 51 .. 1856 1872 .. 1847 1874 .. 0.82 5 ? -1.1 0.0 0.32 2.6e+03 36 49 .. 1881 1894 .. 1877 1895 .. 0.78 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.019 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259457_1 1748 SQTHLRHPQTEGPKLTS 1764 567899********965 PP == domain 2 score: -1.1 bits; conditional E-value: 0.32 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259457_1 1773 QTQLRHPQTEGPRL 1786 44577*******98 PP == domain 3 score: 2.9 bits; conditional E-value: 0.019 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259457_1 1796 SQTHLRHPQTEGPKLTS 1812 567899********965 PP == domain 4 score: 3.3 bits; conditional E-value: 0.014 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259457_1 1856 SQTHLRHPQTEGPKLTS 1872 667999********965 PP == domain 5 score: -1.1 bits; conditional E-value: 0.32 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259457_1 1881 QTQLRHPQTEGPRL 1894 44577*******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.26u 0.46s 00:00:01.72 Elapsed: 00:00:00.79 # Mc/sec: 9165.52 // Query: T259457_2 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.75 # Mc/sec: 9650.53 // Query: T259457_3 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-15 56.3 104.7 8.1e-07 29.4 16.0 5.0 7 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 16.0 4.9e-11 8.1e-07 2 70 .. 29 101 .. 28 102 .. 0.90 2 ! 24.2 23.2 2e-09 3.3e-05 3 68 .. 63 132 .. 50 146 .. 0.40 3 ! 24.7 22.8 1.4e-09 2.3e-05 12 70 .. 94 156 .. 83 179 .. 0.42 4 ! 27.2 18.8 2.4e-10 3.9e-06 2 70 .. 128 200 .. 127 213 .. 0.91 5 ! 10.5 4.6 3.9e-05 0.63 2 33 .. 172 205 .. 171 230 .. 0.79 6 ? -4.1 2.1 1 1.6e+04 41 54 .. 1774 1785 .. 1741 1817 .. 0.58 7 ? -4.0 0.2 1 1.6e+04 41 54 .. 1882 1893 .. 1869 1908 .. 0.59 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 4.9e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259457_3 29 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 101 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 24.2 bits; conditional E-value: 2e-09 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa T259457_3 63 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPA 132 3444444444444443332233343333333344444332222444444344444444443332.334433 PP == domain 3 score: 24.7 bits; conditional E-value: 1.4e-09 CTD 12 gsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 +srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259457_3 94 DSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 156 4444444433344444444444444444432223444444444444444443333.33333322 PP == domain 4 score: 27.2 bits; conditional E-value: 2.4e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259457_3 128 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 200 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 5 score: 10.5 bits; conditional E-value: 3.9e-05 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gs 33 srTPa +s+++srTPa g + +srTpa g++ +s T259457_3 172 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGTQqDS 205 7899999999999999876658888888877433 PP == domain 6 score: -4.1 bits; conditional E-value: 1 CTD 41 gakTPawdaagsrT 54 +akTP + gs+T T259457_3 1774 SAKTPPDR--GSQT 1785 34444444..3333 PP == domain 7 score: -4.0 bits; conditional E-value: 1 CTD 41 gakTPawdaagsrT 54 +akTP + gs+T T259457_3 1882 SAKTPPDR--GSQT 1893 34555555..4444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.40s 00:00:01.81 Elapsed: 00:00:00.79 # Mc/sec: 9161.90 // Query: T110246_1 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 2070.20 // Query: T110246_2 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46 # Mc/sec: 2475.24 // Query: T110246_3 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 2232.57 // Query: T125954_1 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 4868.18 // Query: T125954_2 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 4950.69 // Query: T125954_3 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 5124.40 // Query: T007024_1 [L=6180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-11 42.4 0.0 9.4e-11 41.7 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.7 0.0 5.8e-15 9.4e-11 60 106 .. 672 718 .. 660 722 .. 0.90 Alignments for each domain: == domain 1 score: 41.7 bits; conditional E-value: 5.8e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007024_1 672 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 718 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.03u 0.41s 00:00:02.44 Elapsed: 00:00:00.87 # Mc/sec: 20321.76 // Query: T007024_2 [L=6179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-05 23.1 0.0 5.6e-05 22.6 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.6 0.0 3.4e-09 5.6e-05 170 210 .. 95 135 .. 91 140 .. 0.88 Alignments for each domain: == domain 1 score: 22.6 bits; conditional E-value: 3.4e-09 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeede 210 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + T007024_2 95 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGP 135 789*******************************9886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.03u 0.45s 00:00:02.48 Elapsed: 00:00:01.00 # Mc/sec: 17677.07 // Query: T007024_3 [L=6179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.40s 00:00:02.33 Elapsed: 00:00:00.85 # Mc/sec: 20796.55 // Query: T183174_1 [L=13257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 944 (0.0578928); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.48u 0.65s 00:00:06.13 Elapsed: 00:00:01.06 # Mc/sec: 35779.27 // Query: T183174_2 [L=13257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1098 (0.0673372); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.87u 0.68s 00:00:06.55 Elapsed: 00:00:01.42 # Mc/sec: 26708.47 // Query: T183174_3 [L=13256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1221 (0.0748804); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.50u 0.69s 00:00:07.19 Elapsed: 00:00:01.28 # Mc/sec: 29627.47 // Query: T143054_1 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.64 # Mc/sec: 1877.42 // Query: T143054_2 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 1793.36 // Query: T143054_3 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 2036.52 // Query: T369086_1 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.59 # Mc/sec: 9052.83 // Query: T369086_2 [L=1866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.64 # Mc/sec: 8341.11 // Query: T369086_3 [L=1866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 7736.68 // Query: T046677_1 [L=233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2 9.0 26.8 3.1 8.4 26.8 1.3 1 GRP Glycine rich protein family 2.8 8.4 16.6 4.6 7.7 16.6 1.4 1 FoP_duplication C-terminal duplication domain of Friend of P Domain annotation for each model (and alignments): >> GRP Glycine rich protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 26.8 0.00038 3.1 54 95 .] 36 76 .. 10 82 .. 0.48 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00038 GRP 54 GgygggggggngGGGykgggGgygggggggeggyGgGygggg 95 +g g+ + g+gGGG+ gggGg ggggg+++g GgG +ggg T046677_1 36 SGERGEDRRGEGGGGRGGGGGGRSGGGGGRRSG-GGGDRGGG 76 334444444444444444444444444444443.22222221 PP >> FoP_duplication C-terminal duplication domain of Friend of PRMT1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 16.6 0.00057 4.6 5 50 .. 42 87 .. 35 93 .. 0.48 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00057 FoP_duplication 5 rrarrggggrggrrgrgrggrgg.rggrgrgrggrggkkkkkpktae 50 +r+ +ggggrgg++g+++gg gg r+g+g+ rgg+g+ ++ + e T046677_1 42 DRRGEGGGGRGGGGGGRSGGGGGrRSGGGGDRGGGGE-GTAAVVEVE 87 3344444444444444444444414444444544444.566555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 1075.12 // Query: T046677_2 [L=232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.2 1.7 0.026 13.9 1.7 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 0.046 13.0 12.7 0.058 12.7 12.7 1.1 1 SDA1 SDA1 0.12 11.7 4.1 0.17 11.1 4.1 1.1 1 PIEZO Piezo 0.21 10.6 15.6 0.25 10.3 15.6 1.0 1 DUF2457 Protein of unknown function (DUF2457) 0.38 9.3 2.4 0.55 8.8 2.4 1.2 1 Presenilin Presenilin 0.89 9.1 11.5 1.5 8.4 11.5 1.3 1 FAM176 FAM176 family 1.1 8.4 8.8 1.7 7.8 8.8 1.2 1 DUF4820 Domain of unknown function (DUF4820) 2.3 7.0 5.4 2.9 6.6 5.4 1.1 1 DUF913 Domain of Unknown Function (DUF913) 4.8 6.2 12.0 6.4 5.7 12.0 1.1 1 TRAP_alpha Translocon-associated protein (TRAP), alpha sub 6.8 6.8 21.5 9 6.4 21.5 1.1 1 PTPRCAP Protein tyrosine phosphatase receptor type C-as 7.4 6.6 8.7 9.8 6.2 8.7 1.1 1 CPSF100_C Cleavage and polyadenylation factor 2 C-termina 8.2 4.5 15.0 11 4.1 15.0 1.0 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 1.7 1.9e-05 0.026 31 66 .. 40 75 .. 22 110 .. 0.51 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.9e-05 SpoIIP 31 ekekeeeeeeekeeeeeeeikkeekeeekekee.dse 66 ek++ee+e ee+eeeeeee ++ee+eee e+ee ++e T046677_2 40 EKTEEEKEVEEEEEEEEEE-AEEEEEEEAEEEEtEEE 75 1111111111111111111.11111111111111111 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 12.7 4.3e-05 0.058 131 172 .. 40 79 .. 7 89 .. 0.43 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.3e-05 SDA1 131 esdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeee 172 e++ e+e+e eeeeee+ee+ eeeeeee+eeee+eee e+e T046677_2 40 EKT--EEEKEVEEEEEEEEEEAEEEEEEEAEEEETEEEGEKE 79 112..2222222222222221111111111222222222221 PP >> PIEZO Piezo # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 4.1 0.00013 0.17 124 169 .. 42 91 .. 33 100 .. 0.64 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00013 PIEZO 124 akqqkikkgkkeseeeelak..eeeeeeeaeeekkksekkkw..wrPwvd 169 ++ +k ++++e+eeee+++ eee eee++ee+ ++e+++w w+Pw+d T046677_2 42 TEEEKEVEEEEEEEEEEAEEeeEEEAEEEETEEEGEKEQRQW*rWKPWMD 91 333443333333333333332233337778888889999**999****98 PP >> DUF2457 Protein of unknown function (DUF2457) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 15.6 0.00018 0.25 38 85 .. 32 79 .. 9 83 .. 0.55 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00018 DUF2457 38 airkLgeeaeeEaeeeeeeeeddeedeeddddddddedddedddeede 85 ++ +g+e E e+e eeee++ee+e +++++++ e+++++++ e e T046677_2 32 WLKTVGKEEKTEEEKEVEEEEEEEEEEAEEEEEEEAEEEETEEEGEKE 79 566777776444444444444444444333333333333333332222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 2.4 0.00041 0.55 278 311 .. 42 75 .. 22 97 .. 0.45 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00041 Presenilin 278 eeesaeaeseaeesseekeeeessesseeeeeee 311 +ee++e+e+e+ee++ee+eeee++e++eee+eee T046677_2 42 TEEEKEVEEEEEEEEEEAEEEEEEEAEEEETEEE 75 1111111111111111111111111111111111 PP >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 11.5 0.0011 1.5 47 94 .. 27 73 .. 20 83 .. 0.43 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0011 FAM176 47 crkdlkrlskkkkklkeesekasededeeeeeeeedsseseaeeelse 94 cr+++ ++ k++++ee+++ +e+e+eeeee ee+++e++ eee+ e T046677_2 27 CRPKIWLKTVGKEEKTEEEKEVEEEEEEEEEEAEEEEEEEAEEEET-E 73 6666664555555554444444333333333333333333322222.2 PP >> DUF4820 Domain of unknown function (DUF4820) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 8.8 0.0013 1.7 143 211 .. 21 79 .. 19 82 .. 0.37 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0013 DUF4820 143 LstliCsrpgrsipvsseldnsartlterksekesaesseskkrnkeerdaeseeessedeeeeetvke 211 Ls+l+C rp +++ + ++ +e+e+++++ ++++++ee ++e+eee +e+e+eee+ ke T046677_2 21 LSYLSCCRPKIWLKTVGKEEK---------TEEEKEVEE-EEEEEEEEAEEEEEEEAEEEETEEEGEKE 79 888899888844432222222.........111111111.11111222233333333333344444433 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 5.4 0.0022 2.9 257 306 .. 30 74 .. 19 89 .. 0.34 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0022 DUF913 257 kllvedassasskseasssssssetkeeekssededvemedaeaeteses 306 k++ ++ ++++++e+++ ++++e eee +e e++e+e+a +e+e+e+ T046677_2 30 KIWLKTVGKEEKTEEEKEVEEEEE--EEE--EEAEEEEEEEA-EEEETEE 74 566665212222222211111111..111..11111111111.1111111 PP >> TRAP_alpha Translocon-associated protein (TRAP), alpha subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 12.0 0.0047 6.4 28 68 .. 36 75 .. 21 83 .. 0.45 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0047 TRAP_alpha 28 aaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeee 68 +e+++++e ++ve+e+ee+eee+eeeeeee eeee+eee T046677_2 36 VGKEEKTEEE-KEVEEEEEEEEEEAEEEEEEEAEEEETEEE 75 4455556665.444443333333333333222222222222 PP >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 21.5 0.0066 9 30 78 .. 29 78 .. 19 83 .. 0.47 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0066 PTPRCAP 30 pgrWlraraedgeedeeeEdqedeedeeeds.edleggeeeaesqeeeqa 78 p Wl++ +++ +ee+E +e+ee+eee+ e+ e+++ee+e +ee ++ T046677_2 29 PKIWLKTVGKEEKTEEEKEVEEEEEEEEEEAeEEEEEEAEEEETEEEGEK 78 67899998755555565666555555554320111222222222222221 PP >> CPSF100_C Cleavage and polyadenylation factor 2 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 8.7 0.0072 9.8 38 74 .. 40 76 .. 13 83 .. 0.46 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0072 CPSF100_C 38 eeekeeeeeeeeeeeeeeeankkqklaeksekeasee 74 e+++ee+e eeeeeeeeeea++++++++++e++++e T046677_2 40 EKTEEEKEVEEEEEEEEEEAEEEEEEEAEEEETEEEG 76 2222222222222222222222222211111111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 15.0 0.0079 11 130 168 .. 39 80 .. 28 89 .. 0.37 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0079 CDC45 130 eesdedd...eeeeedddeeeeeeeeedeeeeeedeeeskkk 168 ee++e++ eeeee+++ee+eeeeee+ eeee++ee +k++ T046677_2 39 EEKTEEEkevEEEEEEEEEEAEEEEEEEAEEEETEEEGEKEQ 80 222222222222222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1902 (0.116644); expected 326.1 (0.02) Passed bias filter: 1062 (0.0651294); expected 326.1 (0.02) Passed Vit filter: 357 (0.0218938); expected 16.3 (0.001) Passed Fwd filter: 49 (0.00300503); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 1185.20 // Query: T046677_3 [L=232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 413 (0.0253281); expected 326.1 (0.02) Passed Vit filter: 106 (0.00650067); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.74 # Mc/sec: 896.91 // Query: T139187_1 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 66 (0.00404759); expected 326.1 (0.02) Passed bias filter: 34 (0.00208512); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.72 # Mc/sec: 2980.03 // Query: T139187_2 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 48 (0.0029437); expected 326.1 (0.02) Passed bias filter: 25 (0.00153318); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3296.56 // Query: T139187_3 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 59 (0.0036183); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.69 # Mc/sec: 3105.45 // Query: T293999_1 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 5580.89 // Query: T293999_2 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 6628.49 // Query: T293999_3 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 5576.35 // Query: T066578_1 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-23 80.7 0.0 1.1e-22 79.5 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 0.0 6.8e-27 1.1e-22 19 80 .] 176 237 .. 170 237 .. 0.96 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 6.8e-27 Transposase_1 19 kkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 k+ pk++ hqkkvm+ Vw sa+gli+y++l+pg titse+Yaqq+ +++qklq ++pa vnr T066578_1 176 KTPPKANFHQKKVMVAVWCSAAGLIHYSVLNPGLTITSEKYAQQIAEMHQKLQYLQPAFVNR 237 67799*******************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 5025.52 // Query: T066578_2 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 4943.14 // Query: T066578_3 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 5110.70 // Query: T235909_1 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 5929.30 // Query: T235909_2 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 5655.64 // Query: T235909_3 [L=1284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5924.69 // Query: T316022_1 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.1 8.6 5.9 2.7 8.3 3.4 2.3 2 COX17 Cytochrome C oxidase copper chaperone (COX17) Domain annotation for each model (and alignments): >> COX17 Cytochrome C oxidase copper chaperone (COX17) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 3.4 0.00017 2.7 3 40 .. 335 375 .. 333 384 .. 0.84 2 ? -0.1 0.0 0.07 1.1e+03 34 46 .. 384 396 .. 377 397 .. 0.83 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00017 COX17 3 lKpCCaCpetKkaRDeCilesgaeee....kCkelieahkaC 40 + p C+C +t ++ +C+ ++++++ +C i+ah++C T316022_1 335 PTPSCVCTHTHSNTHQCLPLHTSSHThttsHCP-HIHAHTQC 375 5689**************999866667787886.69*****9 PP == domain 2 score: -0.1 bits; conditional E-value: 0.07 COX17 34 ieahkaCmrslGF 46 + h+aC+ + F T316022_1 384 THTHNACLSAHSF 396 578*****99998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 613 (0.0375935); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 3173.90 // Query: T316022_2 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 3298.37 // Query: T316022_3 [L=587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.74 # Mc/sec: 2269.33 // Query: T233940_1 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 4901.27 // Query: T233940_2 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 6665.73 // Query: T233940_3 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.40s 00:00:01.30 Elapsed: 00:00:00.71 # Mc/sec: 4694.18 // Query: T139104_1 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 3757.87 // Query: T139104_2 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-08 32.3 79.8 9 6.3 1.9 17.5 18 DUF3923 Protein of unknown function (DUF3923) ------ inclusion threshold ------ 9.1 6.0 9.8 1.3e+02 2.2 0.1 5.3 4 SpoIIE Stage II sporulation protein E (SpoIIE) Domain annotation for each model (and alignments): >> DUF3923 Protein of unknown function (DUF3923) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.4 1.3 0.0021 18 10 32 .. 10 32 .. 1 33 [. 0.79 2 ! 5.2 0.1 0.0025 21 13 32 .. 34 53 .. 32 54 .. 0.89 3 ! 5.4 0.1 0.0021 17 14 32 .. 56 74 .. 54 79 .. 0.89 4 ? -0.1 0.4 0.11 8.9e+02 13 32 .. 76 95 .. 74 100 .. 0.87 5 ! 6.1 1.0 0.0013 10 4 32 .. 85 116 .. 82 117 .. 0.81 6 ! 5.1 0.2 0.0026 21 14 32 .. 119 137 .. 117 138 .. 0.88 7 ? -0.1 0.1 0.11 9.2e+02 13 27 .. 139 153 .. 137 159 .. 0.81 8 ! 5.9 0.9 0.0015 12 11 32 .. 158 179 .. 146 186 .. 0.83 9 ! 6.3 1.9 0.0011 9 4 33 .. 190 222 .. 187 238 .. 0.81 10 ! 5.5 0.2 0.002 16 13 32 .. 244 263 .. 236 264 .. 0.89 11 ! 5.1 0.1 0.0027 22 14 32 .. 266 284 .. 264 286 .. 0.89 12 ? 0.1 0.1 0.1 8.2e+02 14 32 .. 287 305 .. 285 306 .. 0.88 13 ! 5.4 0.3 0.0022 18 13 32 .. 307 326 .. 303 328 .. 0.89 14 ! 5.1 0.1 0.0027 22 14 32 .. 329 347 .. 327 349 .. 0.89 15 ? 1.2 0.0 0.044 3.6e+02 13 32 .. 349 368 .. 347 369 .. 0.88 16 ! 5.2 0.2 0.0025 20 13 32 .. 370 389 .. 368 390 .. 0.89 17 ! 5.2 0.1 0.0025 21 13 32 .. 391 410 .. 389 411 .. 0.89 18 ! 5.0 0.6 0.0029 23 13 32 .. 412 431 .. 410 452 .. 0.88 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0021 DUF3923 10 fwillfvilalfIfiRkvDgaGv 32 ++ ++ ++l ++++iR+v g+Gv T139104_2 10 GVDIITLVLEAMVWIRSVIGHGV 32 5568889999************8 PP == domain 2 score: 5.2 bits; conditional E-value: 0.0025 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l +++++R+v g+Gv T139104_2 34 IITLVLEAMVWTRSVIGHGV 53 57788999***********8 PP == domain 3 score: 5.4 bits; conditional E-value: 0.0021 DUF3923 14 lfvilalfIfiRkvDgaGv 32 + ++l +++++R+v g+Gv T139104_2 56 ITLVLEAMVWTRSVIGHGV 74 6788999***********9 PP == domain 4 score: -0.1 bits; conditional E-value: 0.11 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l ++++i +v g+Gv T139104_2 76 IITLVLEAMVWITSVIGHGV 95 6778899999**99999998 PP == domain 5 score: 6.1 bits; conditional E-value: 0.0013 DUF3923 4 wwilni...fwillfvilalfIfiRkvDgaGv 32 +wi ++ ++ ++ + l +++++R+v g+Gv T139104_2 85 VWITSVighGVDIITLALEAMVWTRSVIGHGV 116 5555554667789999999************8 PP == domain 6 score: 5.1 bits; conditional E-value: 0.0026 DUF3923 14 lfvilalfIfiRkvDgaGv 32 + ++l ++++iR+v g+Gv T139104_2 119 ITLVLEAMVWIRSVIGHGV 137 6788999***********8 PP == domain 7 score: -0.1 bits; conditional E-value: 0.11 DUF3923 13 llfvilalfIfiRkv 27 ++ ++l +++++R+v T139104_2 139 IITLVLEAMVWTRSV 153 57788999*****99 PP == domain 8 score: 5.9 bits; conditional E-value: 0.0015 DUF3923 11 willfvilalfIfiRkvDgaGv 32 + ++ ++l +++++R+v g+Gv T139104_2 158 VDIITLVLEAMVWTRSVIGHGV 179 557889999************9 PP == domain 9 score: 6.3 bits; conditional E-value: 0.0011 DUF3923 4 wwilni...fwillfvilalfIfiRkvDgaGvv 33 +wi ++ ++ ++ + l +++++R+v g+Gv T139104_2 190 VWITSVighGVDIITLALEAMVWTRSVIGHGVD 222 5555554667789999999************95 PP == domain 10 score: 5.5 bits; conditional E-value: 0.002 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l +++++R+v g+Gv T139104_2 244 IITLVLEAMVWTRSVIGHGV 263 6788999************8 PP == domain 11 score: 5.1 bits; conditional E-value: 0.0027 DUF3923 14 lfvilalfIfiRkvDgaGv 32 + ++l +++++R+v g+Gv T139104_2 266 ITLVLEAMVWTRSVIGHGV 284 6788999***********8 PP == domain 12 score: 0.1 bits; conditional E-value: 0.1 DUF3923 14 lfvilalfIfiRkvDgaGv 32 + ++l +++ iR+v g+Gv T139104_2 287 ITLVLEVMVCIRSVIGHGV 305 6788999***********8 PP == domain 13 score: 5.4 bits; conditional E-value: 0.0022 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l ++++iR+v g+Gv T139104_2 307 IITLVLEAMVWIRSVIGHGV 326 67788999***********8 PP == domain 14 score: 5.1 bits; conditional E-value: 0.0027 DUF3923 14 lfvilalfIfiRkvDgaGv 32 + ++l +++++R+v g+Gv T139104_2 329 ITLVLEAMVWTRSVIGHGV 347 6788999***********8 PP == domain 15 score: 1.2 bits; conditional E-value: 0.044 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l +++++R+v g+Gv T139104_2 349 IITLVLEAMLSTRSVIGHGV 368 57788999***********8 PP == domain 16 score: 5.2 bits; conditional E-value: 0.0025 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l ++++iR+v g+Gv T139104_2 370 IITLVLEAMVWIRSVIGHGV 389 57788999***********8 PP == domain 17 score: 5.2 bits; conditional E-value: 0.0025 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l +++++R+v g+Gv T139104_2 391 IITLVLEAMVWTRSVIGHGV 410 57788999***********8 PP == domain 18 score: 5.0 bits; conditional E-value: 0.0029 DUF3923 13 llfvilalfIfiRkvDgaGv 32 ++ ++l +++++R+v g+Gv T139104_2 412 IITLVLEAMVWTRSVIGHGV 431 57788999***********8 PP >> SpoIIE Stage II sporulation protein E (SpoIIE) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 0.07 5.7e+02 12 36 .. 27 51 .. 3 84 .. 0.54 2 ? 1.8 0.1 0.021 1.7e+02 11 45 .. 89 123 .. 82 186 .. 0.59 3 ? 2.2 0.1 0.017 1.3e+02 8 61 .. 191 244 .. 187 253 .. 0.72 4 ? 1.9 0.7 0.02 1.6e+02 13 39 .. 301 327 .. 257 450 .. 0.69 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.07 ESSSSHHHHHHHHHHHHHHHHHHHH CS SpoIIE 12 vvGhGleAalimgllrsalrelata 36 v GhG++ ++ ++ + r+ + + T139104_2 27 VIGHGVDIITLVLEAMVWTRSVIGH 51 4444444444444444444444444 PP == domain 2 score: 1.8 bits; conditional E-value: 0.021 EESSSSHHHHHHHHHHHHHHHHHHHHTTS....HHHHHH CS SpoIIE 11 DvvGhGleAalimgllrsalrelatagle....paevlk 45 v GhG++ ++ ++ + r+ + +g + + T139104_2 89 SVIGHGVDIITLALEAMVWTRSVIGHGVDiitlV----L 123 5666666666666666666666666666532221....2 PP == domain 3 score: 2.2 bits; conditional E-value: 0.017 EEEEESSSSHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHCCCTSTT.TT CS SpoIIE 8 vvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerf 61 + v GhG++ ++ ++ + r+ + +g + ++++ ++ + + +++ + + T139104_2 191 WITSVIGHGVDIITLALEAMVWTRSVIGHGVDITTLVLEVMLCIRSVIRHGVDI 244 577799999999999999999999999999997777666555554444554444 PP == domain 4 score: 1.9 bits; conditional E-value: 0.02 SSSSHHHHHHHHHHHHHHHHHHHHTTS CS SpoIIE 13 vGhGleAalimgllrsalrelatagle 39 GhG++ ++ ++ ++r+ + +g + T139104_2 301 IGHGVDIITLVLEAMVWIRSVIGHGVD 327 444444444444444444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 3309.17 // Query: T139104_3 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3959.18 // Query: T320624_1 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 4005.16 // Query: T320624_2 [L=839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3692.67 // Query: T320624_3 [L=839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 3636.72 // Query: T175230_1 [L=1675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.66 # Mc/sec: 7260.44 // Query: T175230_2 [L=1674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.74 # Mc/sec: 6471.66 // Query: T175230_3 [L=1674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 7367.74 // Query: T150637_1 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 9616.79 // Query: T150637_2 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 10082.12 // Query: T150637_3 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 10242.71 // Query: T051396_1 [L=5110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.33s 00:00:02.00 Elapsed: 00:00:00.70 # Mc/sec: 20884.06 // Query: T051396_2 [L=5109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.41s 00:00:02.04 Elapsed: 00:00:00.79 # Mc/sec: 18501.24 // Query: T051396_3 [L=5109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.73 # Mc/sec: 20021.89 // Query: T125009_1 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.69 # Mc/sec: 6061.64 // Query: T125009_2 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 6434.67 // Query: T125009_3 [L=1461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 6057.50 // Query: T235261_1 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 11703.78 // Query: T235261_2 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.74 # Mc/sec: 10596.67 // Query: T235261_3 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.78 # Mc/sec: 10053.25 // Query: T277340_1 [L=2085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 8060.58 // Query: T277340_2 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 8898.46 // Query: T277340_3 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.66 # Mc/sec: 9033.29 // Query: T051671_1 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-07 30.4 7.0 61 3.2 0.0 9.4 10 CagY_M DC-EC Repeat Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 276 282 .. 274 283 .. 0.89 2 ! 2.0 0.0 0.009 1.5e+02 17 23 .. 336 342 .. 334 344 .. 0.89 3 ! 2.2 0.0 0.0081 1.3e+02 17 23 .. 352 358 .. 345 359 .. 0.88 4 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 368 374 .. 366 375 .. 0.89 5 ? 1.8 0.0 0.01 1.6e+02 17 23 .. 382 388 .. 381 389 .. 0.88 6 ! 3.2 0.0 0.0037 61 17 24 .. 396 403 .. 395 404 .. 0.89 7 ? 1.5 0.0 0.013 2.1e+02 17 23 .. 426 432 .. 423 433 .. 0.91 8 ? 1.5 0.1 0.013 2.1e+02 17 23 .. 614 620 .. 611 621 .. 0.91 9 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 628 634 .. 626 635 .. 0.89 10 ! 1.9 0.0 0.0094 1.5e+02 17 23 .. 702 708 .. 699 709 .. 0.90 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 276 ACLDGLS 282 8*****9 PP == domain 2 score: 2.0 bits; conditional E-value: 0.009 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 336 ACLDGLS 342 8*****9 PP == domain 3 score: 2.2 bits; conditional E-value: 0.0081 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 352 ACLDGLS 358 8*****9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 368 ACLDGLS 374 8*****9 PP == domain 5 score: 1.8 bits; conditional E-value: 0.01 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 382 ACLDGLS 388 8*****9 PP == domain 6 score: 3.2 bits; conditional E-value: 0.0037 CagY_M 17 eCLkgLsd 24 +CL+gLs+ T051671_1 396 ACLDGLSQ 403 8******7 PP == domain 7 score: 1.5 bits; conditional E-value: 0.013 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 426 ACLDGLS 432 7*****9 PP == domain 8 score: 1.5 bits; conditional E-value: 0.013 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 614 ACLDGLS 620 8*****9 PP == domain 9 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 628 ACLDGLS 634 8*****9 PP == domain 10 score: 1.9 bits; conditional E-value: 0.0094 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_1 702 ACLDGLS 708 8*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3473.23 // Query: T051671_2 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-07 31.3 20.3 72 3.0 0.4 13.1 13 CagY_M DC-EC Repeat ------ inclusion threshold ------ 0.078 13.7 10.8 78 4.1 0.1 6.8 8 ANATO Anaphylotoxin-like domain Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.1 0.025 2e+02 17 23 .. 221 227 .. 219 229 .. 0.89 2 ? 1.9 0.6 0.019 1.5e+02 16 23 .. 232 239 .. 222 240 .. 0.66 3 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 261 267 .. 259 268 .. 0.89 4 ? 1.9 0.0 0.019 1.5e+02 17 23 .. 291 297 .. 288 298 .. 0.90 5 ! 3.0 0.4 0.0088 72 15 15 .. 315 315 .. 304 328 .. 0.48 6 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 527 533 .. 525 534 .. 0.89 7 ? 1.8 0.0 0.02 1.6e+02 17 23 .. 541 547 .. 540 548 .. 0.88 8 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 555 561 .. 553 562 .. 0.89 9 ? 2.3 0.0 0.014 1.2e+02 17 23 .. 643 649 .. 640 655 .. 0.87 10 ? 2.2 0.0 0.016 1.3e+02 17 23 .. 659 665 .. 651 666 .. 0.87 11 ? 1.8 0.0 0.02 1.6e+02 17 23 .. 673 679 .. 672 680 .. 0.88 12 ? 1.5 0.0 0.025 2e+02 17 23 .. 687 693 .. 685 694 .. 0.89 13 ? 1.9 0.0 0.019 1.5e+02 17 23 .. 717 723 .. 714 724 .. 0.90 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.025 CagY_M 17 eCLkgLs 23 +CL+gL+ T051671_2 221 ACLDGLT 227 8*****9 PP == domain 2 score: 1.9 bits; conditional E-value: 0.019 CagY_M 16 keCLkgLs 23 ++CL+gL+ T051671_2 232 RACLDGLT 239 68999998 PP == domain 3 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 261 ACLDGLS 267 8*****9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 291 ACLDGLS 297 8*****9 PP == domain 5 score: 3.0 bits; conditional E-value: 0.0088 CagY_M 15 r 15 r T051671_2 315 R 315 1 PP == domain 6 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 527 ACLDGLS 533 8*****9 PP == domain 7 score: 1.8 bits; conditional E-value: 0.02 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 541 ACLDGLS 547 8*****9 PP == domain 8 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 555 ACLDGLS 561 8*****9 PP == domain 9 score: 2.3 bits; conditional E-value: 0.014 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 643 ACLDGLS 649 8*****9 PP == domain 10 score: 2.2 bits; conditional E-value: 0.016 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 659 ACLDGLS 665 8*****9 PP == domain 11 score: 1.8 bits; conditional E-value: 0.02 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 673 ACLDGLS 679 8*****9 PP == domain 12 score: 1.5 bits; conditional E-value: 0.025 CagY_M 17 eCLkgLs 23 +CL+gL+ T051671_2 687 ACLDGLT 693 8*****9 PP == domain 13 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_2 717 ACLDGLS 723 8*****9 PP >> ANATO Anaphylotoxin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.1 0.0096 78 2 17 .. 222 236 .. 222 245 .. 0.90 2 ? -2.1 0.0 0.82 6.7e+03 2 13 .. 262 273 .. 262 274 .. 0.85 3 ? 2.6 0.0 0.028 2.3e+02 2 22 .. 292 313 .. 292 325 .. 0.73 4 ? -2.0 0.0 0.81 6.6e+03 2 13 .. 322 333 .. 322 334 .. 0.85 5 ? 0.5 0.0 0.13 1.1e+03 12 30 .. 375 394 .. 370 395 .. 0.80 6 ? 3.1 0.1 0.02 1.7e+02 2 28 .. 528 556 .. 528 562 .. 0.69 7 ? -3.4 0.0 2 1.6e+04 2 10 .. 644 652 .. 644 656 .. 0.80 8 ? 3.1 0.0 0.02 1.7e+02 2 28 .. 660 688 .. 659 691 .. 0.69 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0096 HHHHH---S.-S-HHH CS ANATO 2 CedGmkrnpmgrtCee 17 C dG++++p gr C+ T051671_2 222 CLDGLTHTP-GRACLD 236 *********.****85 PP == domain 2 score: -2.1 bits; conditional E-value: 0.82 HHHHH---S.-S CS ANATO 2 CedGmkrnpmgr 13 C dG+++++++r T051671_2 262 CLDGLSHTHTRR 273 ******998776 PP == domain 3 score: 2.6 bits; conditional E-value: 0.028 HHHHH---S..-S-HHHHHHH- CS ANATO 2 CedGmkrnpm.grtCeerakri 22 C dG+++++m gr C+ T051671_2 292 CLDGLSHTHMpGRACLDGLSHT 313 99*****888899998766554 PP == domain 4 score: -2.0 bits; conditional E-value: 0.81 HHHHH---S.-S CS ANATO 2 CedGmkrnpmgr 13 C dG+++++++r T051671_2 322 CLDGLSHTHTRR 333 ******998776 PP == domain 5 score: 0.5 bits; conditional E-value: 0.13 -S-HHHHHHH--.S-HHHHH CS ANATO 12 grtCeerakrik.ngeeCrk 30 +tC+e+ + + ++Cr+ T051671_2 375 THTCREEHAWMGsHTHTCRE 394 689**999998635888986 PP == domain 6 score: 3.1 bits; conditional E-value: 0.02 HHHHH--.-S.-S-HHHHHHH--.S-HHH CS ANATO 2 CedGmkr.npmgrtCeerakrik.ngeeC 28 C dG+++ +gr C+ + +g +C T051671_2 528 CLDGLSHtHTLGRACLDGLSHTHtPGRAC 556 88888884446888887766654346666 PP == domain 7 score: -3.4 bits; conditional E-value: 2 HHHHH---S CS ANATO 2 CedGmkrnp 10 C dG+++++ T051671_2 644 CLDGLSHTH 652 9***99876 PP == domain 8 score: 3.1 bits; conditional E-value: 0.02 HHHHH--.-S.-S-HHHHHHH--.S-HHH CS ANATO 2 CedGmkr.npmgrtCeerakrik.ngeeC 28 C dG+++ +gr C+ + +g +C T051671_2 660 CLDGLSHtHTLGRACLDGLSHTHtPGRAC 688 88999994446999987776664346666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 3367.98 // Query: T051671_3 [L=776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-12 45.8 3.5 12 5.5 0.0 11.4 12 CagY_M DC-EC Repeat ------ inclusion threshold ------ 5.3 6.8 72.2 2.3 8.0 0.6 9.9 4 SBP_bac_10 Protein of unknown function (DUF1559) Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 0.019 1.5e+02 17 23 .. 190 196 .. 187 197 .. 0.90 2 ? 1.5 0.0 0.025 2e+02 17 23 .. 206 212 .. 204 213 .. 0.89 3 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 246 252 .. 244 253 .. 0.89 4 ! 5.5 0.0 0.0015 12 11 23 .. 404 416 .. 402 417 .. 0.82 5 ! 4.1 0.0 0.004 33 15 23 .. 440 448 .. 438 449 .. 0.92 6 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 456 462 .. 454 463 .. 0.89 7 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 470 476 .. 468 477 .. 0.89 8 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 484 490 .. 482 491 .. 0.89 9 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 498 504 .. 496 505 .. 0.89 10 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 512 518 .. 510 519 .. 0.89 11 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 584 590 .. 582 591 .. 0.89 12 ? 1.8 0.0 0.021 1.7e+02 17 23 .. 598 604 .. 597 605 .. 0.89 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 190 ACLDGLS 196 8*****9 PP == domain 2 score: 1.5 bits; conditional E-value: 0.025 CagY_M 17 eCLkgLs 23 +CL+gL+ T051671_3 206 ACLDGLT 212 8*****9 PP == domain 3 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 246 ACLDGLS 252 8*****9 PP == domain 4 score: 5.5 bits; conditional E-value: 0.0015 CagY_M 11 deeErkeCLkgLs 23 + + r++CL+gLs T051671_3 404 THTPRRACLDGLS 416 556699******9 PP == domain 5 score: 4.1 bits; conditional E-value: 0.004 CagY_M 15 rkeCLkgLs 23 r++CL+gLs T051671_3 440 RRACLDGLS 448 89******9 PP == domain 6 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 456 ACLDGLS 462 8*****9 PP == domain 7 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 470 ACLDGLS 476 8*****9 PP == domain 8 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 484 ACLDGLS 490 8*****9 PP == domain 9 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 498 ACLDGLS 504 8*****9 PP == domain 10 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 512 ACLDGLS 518 8*****9 PP == domain 11 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 584 ACLDGLS 590 8*****9 PP == domain 12 score: 1.8 bits; conditional E-value: 0.021 CagY_M 17 eCLkgLs 23 +CL+gLs T051671_3 598 ACLDGLS 604 8*****9 PP >> SBP_bac_10 Protein of unknown function (DUF1559) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.6 0.00028 2.3 150 195 .. 177 236 .. 145 244 .. 0.64 2 ? 4.0 16.9 0.0048 39 127 255 .. 208 335 .. 202 340 .. 0.75 3 ? -5.4 25.5 2 1.6e+04 163 252 .. 510 594 .. 358 596 .. 0.75 4 ? 1.0 12.9 0.039 3.2e+02 164 255 .. 583 701 .. 579 712 .. 0.81 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00028 SBP_bac_10 150 stdGmfgdns..............kirfrdilDGlSnTilvgEkaldlskssktgtdgea 195 s dG+ +++ + r++lDGl++T E ++++++++++++++ T051671_3 177 SLDGLSHTHTpgracldglshthtHTPGRACLDGLTHTHTRREEHAWMGSHTRREEHAWM 236 444444444444444444444444888899999999999999999999999888765544 PP == domain 2 score: 4.0 bits; conditional E-value: 0.0048 SBP_bac_10 127 rkslaaaggsggtrsvteadspsstdGmfgdnskirfrdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattklswalkgvettestn 225 ++l+++++ ++++ ++++ +++ +g + + r++lDGlS+T E +++++++ t +g+ pg++ + + ++ w ++ ++t +++ T051671_3 208 LDGLTHTHTRREEHAWMGSHTRREEHAWMGSHTHMPGRACLDGLSHTHTRREEHAWMGSHTHTH-AGKSMPGWALTHTHTRREEHAWMGSHTHTCREEH 305 566788889999999999999999999999999*************************996664.4444444444444444444477777666666666 PP SBP_bac_10 226 aeraagslaerngdnaadvrgfsSaHaggv 255 a + + + + ++++ +a++ + Hag + T051671_3 306 AWMGSHTHTDTRREEHAWMGSHTHTHAGKS 335 666666677777788888888888898865 PP == domain 3 score: -5.4 bits; conditional E-value: 2 SBP_bac_10 163 frdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattklswalkgvettestnaeraagslaerngdnaadvrgfsSaHa 252 r++lDGlS+T E +++++++ t ++ + +++ s ++t+ + a++g +t ++++++ + gs ++++ + +a ++g+s H+ T051671_3 510 GRACLDGLSHTHTRREEHAWMGSHTHT-----HWEEHAWMGSHTHTRREEHAWMGSHTHTHWEEHGWMGSHTHTHTPGRACLDGLSHTHT 594 479*******************99666.....67777777888899999************************************99997 PP == domain 4 score: 1.0 bits; conditional E-value: 0.039 SBP_bac_10 164 rdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattkl.............................swalkgvettestnaeraagsl 233 r++lDGlS+T +g ld + ++t +g+ pg++ ++ a++++ + a++g +t ++++++ + gs T051671_3 583 RACLDGLSHTHTLGRACLDGLSRTRTH-AGKSMPGWAL-MHTHAGKSMpgwalththtrreehawmgshthtdtrreEHAWMGSHTHTHWEEHAWMGSH 679 78************9888888665443.3333333333.33333333368999999999*****************999******************** PP SBP_bac_10 234 aerngdnaadvrgfsSaHaggv 255 ++++++ +a++ + H+g + T051671_3 680 THTRREEHAWMGSHTHTHTGKS 701 ******************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 3126.77 // Query: T277355_1 [L=5810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 537 (0.0329327); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:00.74 # Mc/sec: 22461.38 // Query: T277355_2 [L=5810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 842 (0.0516374); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.43s 00:00:02.73 Elapsed: 00:00:00.89 # Mc/sec: 18675.76 // Query: T277355_3 [L=5809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 720 (0.0441555); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.42s 00:00:02.52 Elapsed: 00:00:00.82 # Mc/sec: 20266.54 // Query: T352947_1 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.74 # Mc/sec: 14180.44 // Query: T352947_2 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.71 # Mc/sec: 14779.61 // Query: T352947_3 [L=3667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.74 # Mc/sec: 14176.57 // Query: T089785_1 [L=5078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.37s 00:00:02.06 Elapsed: 00:00:00.83 # Mc/sec: 17502.76 // Query: T089785_2 [L=5077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.41s 00:00:02.16 Elapsed: 00:00:00.98 # Mc/sec: 14820.85 // Query: T089785_3 [L=5077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.43s 00:00:02.21 Elapsed: 00:00:00.87 # Mc/sec: 16694.75 // Query: T211311_1 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 7285.83 // Query: T211311_2 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.81 # Mc/sec: 6926.03 // Query: T211311_3 [L=1960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.71 # Mc/sec: 7897.50 // Query: T212560_1 [L=2570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 9935.59 // Query: T212560_2 [L=2570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 10503.33 // Query: T212560_3 [L=2569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.40s 00:00:01.67 Elapsed: 00:00:00.71 # Mc/sec: 10351.37 // Query: T051569_1 [L=4206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.78 # Mc/sec: 15426.48 // Query: T051569_2 [L=4206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.41s 00:00:01.93 Elapsed: 00:00:00.74 # Mc/sec: 16260.34 // Query: T051569_3 [L=4206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.86 # Mc/sec: 13991.45 // Query: T383388_1 [L=1630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.75 # Mc/sec: 6217.54 // Query: T383388_2 [L=1630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.65 # Mc/sec: 7174.08 // Query: T383388_3 [L=1629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 7397.29 // Query: T194258_1 [L=4300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.40s 00:00:02.02 Elapsed: 00:00:00.82 # Mc/sec: 15001.91 // Query: T194258_2 [L=4300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.8 28.7 41 4.3 0.1 9.2 10 RS4NT RS4NT (NUC023) domain Domain annotation for each model (and alignments): >> RS4NT RS4NT (NUC023) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.3 0.18 2.9e+03 4 15 .. 1785 1796 .. 1784 1798 .. 0.87 2 ? 0.9 0.1 0.027 4.5e+02 8 16 .. 2677 2685 .. 2675 2686 .. 0.91 3 ? 4.3 0.1 0.0025 41 7 16 .. 2744 2753 .. 2743 2754 .. 0.93 4 ? 4.3 0.1 0.0025 41 8 17 .. 2920 2929 .. 2918 2929 .. 0.91 5 ? 4.3 0.1 0.0025 41 7 16 .. 2985 2994 .. 2984 2995 .. 0.93 6 ? -2.0 0.1 0.23 3.8e+03 10 16 .. 3021 3027 .. 3020 3028 .. 0.85 7 ? 2.3 0.0 0.011 1.7e+02 8 17 .. 3227 3236 .. 3225 3236 .. 0.91 8 ? 2.0 0.0 0.013 2.1e+02 8 16 .. 3299 3307 .. 3297 3308 .. 0.91 9 ? 2.0 0.0 0.013 2.1e+02 8 16 .. 3438 3446 .. 3436 3447 .. 0.91 10 ? 1.8 0.0 0.015 2.5e+02 8 17 .. 3541 3550 .. 3539 3550 .. 0.90 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.18 ---EETTTS-GG CS RS4NT 4 kkHLKrlaAPkh 15 kk+LK+l+A h T194258_2 1785 KKKLKSLSAGEH 1796 9********877 PP == domain 2 score: 0.9 bits; conditional E-value: 0.027 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194258_2 2677 KSLKAPGHW 2685 9******** PP == domain 3 score: 4.3 bits; conditional E-value: 0.0025 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194258_2 2744 LKSLSAPEHW 2753 9********* PP == domain 4 score: 4.3 bits; conditional E-value: 0.0025 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+APkhW+ T194258_2 2920 KSLSAPKHWQ 2929 9********5 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0025 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194258_2 2985 LKSLSAPEHW 2994 9********* PP == domain 6 score: -2.0 bits; conditional E-value: 0.23 TTS-GGG CS RS4NT 10 laAPkhW 16 ++AP hW T194258_2 3021 ISAPEHW 3027 79***** PP == domain 7 score: 2.3 bits; conditional E-value: 0.011 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+AP hW+ T194258_2 3227 KSLSAPEHWQ 3236 9********5 PP == domain 8 score: 2.0 bits; conditional E-value: 0.013 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194258_2 3299 KSLSAPEHW 3307 9******** PP == domain 9 score: 2.0 bits; conditional E-value: 0.013 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194258_2 3438 KSLSAPEHW 3446 9******** PP == domain 10 score: 1.8 bits; conditional E-value: 0.015 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K l+AP hW+ T194258_2 3541 KTLSAPEHWQ 3550 99*******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.74 # Mc/sec: 16623.74 // Query: T194258_3 [L=4300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.41s 00:00:02.04 Elapsed: 00:00:00.76 # Mc/sec: 16186.27 // Query: T233827_1 [L=4895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1452 (0.089047); expected 326.1 (0.02) Passed bias filter: 425 (0.026064); expected 326.1 (0.02) Passed Vit filter: 240 (0.0147185); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.75u 0.61s 00:00:05.36 Elapsed: 00:00:01.31 # Mc/sec: 10689.90 // Query: T233827_2 [L=4894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1246 (0.0764136); expected 326.1 (0.02) Passed bias filter: 338 (0.0207286); expected 326.1 (0.02) Passed Vit filter: 172 (0.0105483); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.64u 0.56s 00:00:04.20 Elapsed: 00:00:01.13 # Mc/sec: 12281.49 // Query: T233827_3 [L=4894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1486 (0.0911321); expected 326.1 (0.02) Passed bias filter: 442 (0.0271066); expected 326.1 (0.02) Passed Vit filter: 257 (0.0157611); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.50u 0.53s 00:00:06.03 Elapsed: 00:00:01.55 # Mc/sec: 9032.84 // Query: T052979_1 [L=6817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.03u 0.46s 00:00:02.48 Elapsed: 00:00:00.83 # Mc/sec: 23496.72 // Query: T052979_2 [L=6817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.42s 00:00:02.42 Elapsed: 00:00:00.84 # Mc/sec: 23217.00 // Query: T052979_3 [L=6817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.42s 00:00:02.29 Elapsed: 00:00:00.83 # Mc/sec: 23496.72 // Query: T033518_1 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00011 22.1 5.0 0.00017 21.5 5.0 1.1 1 CNDH2_C Condensin II complex subunit CAP-H2 or CNDH2 0.00093 19.7 21.7 0.00093 19.7 21.7 1.5 1 FYDLN_acid Protein of unknown function (FYDLN_acid) ------ inclusion threshold ------ 0.076 11.3 20.0 0.11 10.8 20.0 1.1 1 Mpp10 Mpp10 protein 0.17 11.8 17.8 0.38 10.6 17.8 1.5 1 RXT2_N RXT2-like, N-terminal 0.17 11.6 10.6 0.28 10.9 10.6 1.2 1 CSRNP_N Cysteine/serine-rich nuclear protein N-termi 0.3 10.7 29.0 0.5 9.9 29.0 1.2 1 Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein 0.52 8.2 32.8 0.73 7.8 32.8 1.1 1 DNA_pol_phi DNA polymerase phi 0.53 9.5 23.7 0.89 8.7 23.7 1.2 1 NOA36 NOA36 protein 0.53 9.4 25.1 0.83 8.8 25.1 1.2 1 BUD22 BUD22 1 9.0 20.9 2.5 7.7 20.9 1.6 1 Pox_Ag35 Pox virus Ag35 surface protein 1.3 9.2 14.5 2.6 8.2 14.5 1.4 1 Vfa1 AAA-ATPase Vps4-associated protein 1 1.4 8.1 17.2 2.6 7.2 17.2 1.3 1 CDC27 DNA polymerase subunit Cdc27 1.5 8.9 33.7 2.5 8.1 33.7 1.3 1 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 1.7 8.2 19.5 2.7 7.6 19.5 1.1 1 Slu7 Pre-mRNA splicing Prp18-interacting factor 1.7 6.6 28.0 2.4 6.2 28.0 1.1 1 Nop14 Nop14-like family 2.3 7.9 22.1 4.8 6.9 22.1 1.4 1 DUF1168 Protein of unknown function (DUF1168) 3.4 6.6 42.1 4.9 6.1 42.1 1.1 1 DUF2457 Protein of unknown function (DUF2457) 4.1 6.7 25.0 7.4 5.8 25.0 1.3 1 DUF1510 Protein of unknown function (DUF1510) 4.2 6.5 12.6 6.4 5.9 12.6 1.2 1 DUF4820 Domain of unknown function (DUF4820) 7.1 5.3 17.1 10 4.8 17.1 1.1 1 NARP1 NMDA receptor-regulated protein 1 Domain annotation for each model (and alignments): >> CNDH2_C Condensin II complex subunit CAP-H2 or CNDH2, C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 5.0 2.1e-07 0.00017 81 138 .. 1538 1594 .. 1506 1670 .. 0.57 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.1e-07 CNDH2_C 81 raaarrklarekklkqalleeeeaeeeeevdeqeedddleaedgvddd...ddsgieleee 138 r + rr+++++kk +++ eeee+eeeee++e+++ddd + +d+ dd+ dd + ++ T033518_1 1538 RRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEdddDDNN----SH 1594 2222222222222222222222222222222222222222222222221112222....22 PP >> FYDLN_acid Protein of unknown function (FYDLN_acid) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 21.7 1.1e-06 0.00093 24 99 .. 1516 1590 .. 1510 1597 .. 0.44 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 1.1e-06 FYDLN_acid 24 kdPivcpkcgeefepeevlksraaaaeaeeekkkkeaeedeedeeeeedvsdedadeeeeedddddvdleeddddd 99 ++P+++ + + + ++ ++ + + +++e+kkkk++ee+ee+eeeee++++e++d++++ ddddd+d +eddddd T033518_1 1516 NKPAHSAHVLQNLKYNNRRRRGRRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDD-DDDDDDDDDEDDDDD 1590 567777666666666665333333333333333333333333333333333333333333.333333444444444 PP >> Mpp10 Mpp10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 20.0 0.00014 0.11 252 300 .. 1545 1593 .. 1524 1624 .. 0.47 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00014 Mpp10 252 kdeeeedeeeedeeeeeeeeeeeeeeeeedleeeeeeeeeeeeeedeee 300 +++++++eeee+eeeeeeeeeeeeee+++d +++++++++e++++d+++ T033518_1 1545 EKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNNS 1593 1111111111111111222222222222222222222222222222222 PP >> RXT2_N RXT2-like, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 17.8 0.00047 0.38 26 94 .. 1522 1592 .. 1513 1608 .. 0.48 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00047 RXT2_N 26 eelkkkveyngserkilsrnpierskrkk...kekekeekeeeeedeegdeededdddee..eaeaaeenpykk 94 +++ + +yn+++r+ +r +++ +k+kk + +ee+eeeee+ee++eed+dddd++ ++++++++ ++ T033518_1 1522 AHVLQNLKYNNRRRRGRRRGRRREKKKKKreeE---EEEEEEEEEEEEEEEEDDDDDDDDddDDDDEDDDDDNN 1592 444477888888888777666666555554431...22222222222222222222222223333333333333 PP >> CSRNP_N Cysteine/serine-rich nuclear protein N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 10.6 0.00034 0.28 46 119 .. 1527 1600 .. 1513 1603 .. 0.56 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00034 CSRNP_N 46 tlaehaaeqkrlrreklrerlkeeklealklklsssdlleeeeeealevddisdedldseaelddylflqplst 119 l+ + +++ +rr + re++k+++ e+ +++++++++ eeeee+ + dd +d+d d++++ d+ +lq +s+ T033518_1 1527 NLKYNNRRRRGRRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNNSHLQSVSQ 1600 34433344444445555555555555544444444444444455544555555556667888999999999885 PP >> Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 29.0 0.00061 0.5 95 150 .. 1538 1592 .. 1515 1606 .. 0.38 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00061 -------------..----------------------------------------- CS Cwf_Cwc_15 95 eeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLl 150 +++ rr+e+ +++re ++++e++eeeeeeeeee+ddd+d+d+ddddded+++ T033518_1 1538 RRRGRRREK-KKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNN 1592 111122211.1122222222222222233333333333333333333333333323 PP >> DNA_pol_phi DNA polymerase phi # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 32.8 0.00089 0.73 629 689 .. 1547 1592 .. 1524 1610 .. 0.40 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00089 DNA_pol_phi 629 kegqqelfeeddeeeekeeeedeedeeeedsdeddeeededeeeeededededeeeddedd 689 k++++e +eeee eee+ee+eeee+ edd+++d+d+++++ded+d+d ++ T033518_1 1547 KKKKRE-----EEEEE--EEEEEEEEEEEE--EDDDDDDDDDDDDDDEDDDDD------NN 1592 111111.....11111..111111111111..111111222222222222211......11 PP >> NOA36 NOA36 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 23.7 0.0011 0.89 234 299 .. 1529 1593 .. 1508 1602 .. 0.37 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0011 NOA36 234 kfgrqkqasksdddddkegdseydaykkalasatdededdegdedddddddeeddeeeeddeeeee 299 k+ +++ +++ ++++ + ++++++ + ++e+e++e ++ddddddd++dd++e+dd+++++ T033518_1 1529 KYNNRRRRGRRRGRRREKKKKKREEEEEEEEE-EEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNNS 1593 44333333333222222222222222222222.222222222223333333333333333333333 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 25.1 0.001 0.83 152 205 .. 1541 1597 .. 1519 1612 .. 0.33 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.001 BUD22 152 kkkkkkkkkkeeee..eeesdkeeesedsedeekeeseddeeeeeededdedaee....d 205 +++++kkkkk+eee eee+++eee+e++ed ++++dd++++++dedd+d+++ + T033518_1 1541 GRRREKKKKKREEEeeEEEEEEEEEEEEEED---DDDDDDDDDDDDDEDDDDDNNshlqS 1597 2222222222222200111111111111111...12222222222222222222122332 PP >> Pox_Ag35 Pox virus Ag35 surface protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 20.9 0.003 2.5 60 115 .. 1538 1593 .. 1526 1609 .. 0.38 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.003 Pox_Ag35 60 prkkpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaeeeksnes 115 +r+ ++kkkk+ee+ee++eeee e++ee+e++++d+d+ ++ ++++++ n+s T033518_1 1538 RRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNNS 1593 22222222223333333333333322222333332333333333333333333333 PP >> Vfa1 AAA-ATPase Vps4-associated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 14.5 0.0032 2.6 60 128 .. 1532 1598 .. 1511 1612 .. 0.41 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0032 Vfa1 60 eaakkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekkkelkka 128 +++++ ++ ++ ek kk+ ee++++++e+e+++ e++++d+d+++++++d+++e++ +++++++l++ T033518_1 1532 NRRRRGRRRGRRREKKKKKREEEEEEEEEEEEEE-EEEEEDDDDDDDDDDDDDDEDD-DDDNNSHLQSV 1598 3333333333333444444444444333333332.2222222222222222222222.33333333333 PP >> CDC27 DNA polymerase subunit Cdc27 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 17.2 0.0032 2.6 227 272 .. 1546 1591 .. 1519 1608 .. 0.49 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0032 CDC27 227 ekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekstkk 272 +kkkk e++e++ eee eee+e+e+++ +dd++ +++++e+++ + T033518_1 1546 KKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDN 1591 2233332333222222222222222222222222334444333333 PP >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 33.7 0.0031 2.5 165 218 .. 1537 1590 .. 1514 1594 .. 0.40 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0031 RNA_pol_3_Rpc31 165 edeegksaleklkelaeeeddeeekkekedeeeeeeeeeeeddefdddded.gdD 218 ++ g++ ++k k+++eee++e e++e+e+eeeee+++++ dd+ dddded +dD T033518_1 1537 GRRRGRRREKKKKKREEEEEEE-EEEEEEEEEEEEDDDDDDDDDDDDDDEDdDDD 1590 2233333333333323333332.22222222222222233333333333331444 PP >> Slu7 Pre-mRNA splicing Prp18-interacting factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 19.5 0.0033 2.7 30 83 .. 1545 1592 .. 1524 1609 .. 0.38 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0033 Slu7 30 eerkklkeeelkkkaaeekekakkkeeeas.sdsdedeeedkddededkyaeead 83 e++kk++eee++ ee+e+++++eee++ +d+d+d+++d+dded+ +++++ T033518_1 1545 EKKKKKREEEEE----EEEEEEEEEEEEEEdDDDDDDDDDDDDDEDD---DDDNN 1592 112222222222....1111111111111101111111111111111...22222 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 28.0 0.0029 2.4 365 413 .. 1546 1594 .. 1517 1612 .. 0.36 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0029 Nop14 365 seeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel 413 +++++ eeeee+eeeee+eeeeeee++d+dd+ d++++++e++d+ ++++ T033518_1 1546 KKKKKrEEEEEEEEEEEEEEEEEEEDDDDDDD-DDDDDDDEDDDDDNNSH 1594 11111111111111111111111111111111.11111111111111111 PP >> DUF1168 Protein of unknown function (DUF1168) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 22.1 0.0059 4.8 76 131 .. 1533 1585 .. 1517 1593 .. 0.34 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0059 DUF1168 76 keeaeektaKkrakRekkkqkakkkkkakkkkkeekekeeksedseekseeeeeee 131 +++ + + ++Rekkk+k++++++++++++ee+e+ee+++d+++++++++++e T033518_1 1533 RRRRGRR---RGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDE 1585 2222222...2233333332222222222222222222222222222222222222 PP >> DUF2457 Protein of unknown function (DUF2457) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 42.1 0.006 4.9 47 95 .. 1552 1597 .. 1541 1607 .. 0.40 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.006 DUF2457 47 eeEaeeeeeeeeddeedeeddddddddedddedddeedededddstved 95 eeE eeeeeeee++ee+eedddddddd+ddd+d+d++d+ ++s+ ++ T033518_1 1552 EEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDD---NNSHLQS 1597 444444333333333333333333333332222222222...2333333 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 25.0 0.009 7.4 56 107 .. 1545 1594 .. 1521 1611 .. 0.36 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.009 DUF1510 56 eedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedae 107 e++k++ +ee+e eeee+eee++eeeed+ +++++ d ++de+ + +++++ T033518_1 1545 EKKKKKREEEEE--EEEEEEEEEEEEEEDDDDDDDDDDDDDDEDDDDDNNSH 1594 111111111111..11111111111111111222222222222222222222 PP >> DUF4820 Domain of unknown function (DUF4820) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 12.6 0.0079 6.4 146 208 .. 1513 1575 .. 1503 1594 .. 0.52 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0079 DUF4820 146 liCsrpgrsipvsseldnsartlterksekesaesseskkrnkeerdaeseeessedeeeeet 208 +C +p +s +v ++l+ + r ++ r+ ++++++++++++++ee+++e+eee++e+e+++ T033518_1 1513 YLCNKPAHSAHVLQNLKYNNRRRRGRRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDD 1575 3579***99998777777666666666666555555444444444444444444333322222 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 17.1 0.012 10 385 464 .. 1513 1595 .. 1505 1601 .. 0.60 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.012 HHHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-----...--------S-SSSTT CS NARP1 385 kledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked...eeakkededplgekL 464 l +kp ++++ ++ k ++ + r++ r++ kk++k++e+ee+e++++e+e++++e++ +++d ++ +++d+d + ++L T033518_1 1513 YLCNKPAHSAHVLQNLKYNNRRRRGRRRGRRREKKKKKREEEEEEEEEEEEEEEEEEEDDDDDDDdddDDDDEDDDDDNNSHL 1595 57788888888888888888888888888887777777777777766666655444443333333000333334444455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1203 (0.0737765); expected 326.1 (0.02) Passed bias filter: 526 (0.0322581); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 59 (0.0036183); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 20 [number of targets reported over threshold] # CPU time: 1.57u 0.41s 00:00:01.98 Elapsed: 00:00:00.70 # Mc/sec: 8063.45 // Query: T033518_2 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.54 10.1 18.7 0.91 9.4 18.7 1.2 1 Mucin Mucin-like glycoprotein 0.66 10.0 10.4 1 9.3 10.4 1.2 1 DUF2052 Coiled-coil domain containing protein (DUF205 1.1 9.3 21.4 1.7 8.6 21.4 1.2 1 YL1 YL1 nuclear protein 1.1 9.1 12.7 2 8.2 12.7 1.3 1 DUF3439 Domain of unknown function (DUF3439) 2.8 7.1 19.4 4.6 6.4 19.4 1.2 1 Rtf2 Rtf2 RING-finger 3.5 7.8 15.3 6.8 6.8 15.3 1.3 1 PcfK PcfK-like protein 3.6 7.6 11.8 5.8 6.9 11.8 1.2 1 CPSF100_C Cleavage and polyadenylation factor 2 C-termi 5.4 6.7 29.6 11 5.7 29.6 1.4 1 DUF1168 Protein of unknown function (DUF1168) 6.3 6.6 14.0 11 5.8 14.0 1.3 1 Ferlin_C Ferlin C-terminus 6.4 6.2 25.1 11 5.4 25.1 1.2 1 SR-25 Nuclear RNA-splicing-associated protein Domain annotation for each model (and alignments): >> Mucin Mucin-like glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 18.7 0.00056 0.91 39 66 .. 1565 1592 .. 1537 1596 .. 0.41 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00056 Mucin 39 aegqskltttttttkppttttttttast 66 ++ ++k+ttttttt+++ttt+tttt++t T033518_2 1565 KKKKKKTTTTTTTTTTTTTTKTTTTTTT 1592 1122222222222222222222222222 PP >> DUF2052 Coiled-coil domain containing protein (DUF2052) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 10.4 0.00064 1 83 131 .. 1534 1582 .. 1514 1595 .. 0.40 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00064 DUF2052 83 eeeeeeeeeeeeeeeeeeeeeedekekaeadeedeeeeeekeekeeeee 131 eeeeeeeeeee ++ e++++++k+k++++++++++++++++++++ + T033518_2 1534 EEEEEEEEEEERRRRRREKKKKKKKKKKKKKKKKKKKTTTTTTTTTTTT 1582 3333333333332222222222222222222222222111111111111 PP >> YL1 YL1 nuclear protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 21.4 0.001 1.7 64 128 .. 1535 1573 .. 1531 1602 .. 0.31 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.001 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF YL1 64 eedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidpakeprpkkkserasw 128 ee+eee+e+e +r +r+k+kk+kkk+k kk+kkkk kk+ + T033518_2 1535 EEEEEEEEEERRRRRREKKKKKKKKKK---KKKKKKK------KKT----------------T-T 1573 222222222222222222211111111...1111111......111................1.1 PP >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 12.7 0.0013 2 46 69 .. 1571 1592 .. 1536 1597 .. 0.50 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0013 DUF3439 46 pttttttttttttmpttttlpttt 69 tttttttttttt tttt ttt T033518_2 1571 TTTTTTTTTTTTTTKTTTT--TTT 1592 2233333333333333333..222 PP >> Rtf2 Rtf2 RING-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 19.4 0.0028 4.6 166 220 .. 1530 1584 .. 1529 1596 .. 0.54 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0028 Rtf2 166 iplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaasksssea 220 i++ ++ee+e+ ++r +++kkkkkkk+kkkkk+k+k+++++++ ++++++++ T033518_2 1530 IIIEEEEEEEEEEEERRRRRREKKKKKKKKKKKKKKKKKKKTTTTTTTTTTTTTT 1584 5666677777777777766666666666655555555444444444433333322 PP >> PcfK PcfK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 15.3 0.0042 6.8 79 118 .. 1534 1572 .. 1513 1586 .. 0.44 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0042 PcfK 79 keeekaekradavskkqkekkkakkkkpeeekkkkkkkek 118 +eee++e+++++ ++++ ekkk+kkkk++++kkkkkkk++ T033518_2 1534 EEEEEEEEEEERRRRRR-EKKKKKKKKKKKKKKKKKKKTT 1572 22222222222222222.2222222222111222222222 PP >> CPSF100_C Cleavage and polyadenylation factor 2 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 11.8 0.0035 5.8 42 91 .. 1536 1583 .. 1520 1597 .. 0.31 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0035 CPSF100_C 42 eeeeeeeeeeeeeeeankkqkl.aeksekeaseeeseekkeslptldvlpa 91 eeeeeeeee+ + + ++kk+k+ ++k++k++++++++++++ t + + T033518_2 1536 EEEEEEEEERRRRRREKKKKKKkKKKKKKKKKKKKTTTTTT---TTTTTTT 1583 11111111111111111111110111111111111111111...1111111 PP >> DUF1168 Protein of unknown function (DUF1168) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 29.6 0.0067 11 73 123 .. 1533 1583 .. 1531 1593 .. 0.44 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0067 DUF1168 73 eenkeeaeektaKkrakRekkkqkakkkkkakkkkkeekekeeksedseek 123 ee++ee+ee +++r++Rekkk+k+kkkkk+kkkkk++++++++++ + + T033518_2 1533 EEEEEEEEEEEERRRRRREKKKKKKKKKKKKKKKKKKKTTTTTTTTTTTTT 1583 455555566666666666666644444444444444443333333222222 PP >> Ferlin_C Ferlin C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 14.0 0.0067 11 23 56 .. 1537 1575 .. 1530 1594 .. 0.39 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0067 Ferlin_C 23 qediereerea......kkkkKkkkkrsekkpedlefkds 56 +e+ e+eer + k kkKkkkk+++kk+++ + +++ T033518_2 1537 EEEEEEEERRRrrrekkK-KKKKKKKKKKKKKKKKTTTTT 1575 333333333335665432.222222222222222221222 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 25.1 0.0067 11 88 120 .. 1542 1574 .. 1532 1592 .. 0.39 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0067 SR-25 88 drkkrgkkkdkkkkkkkkkkkkkkekkkakeka 120 ++++r ++++kkkkkkkkkkkkkk+kkk+ ++ T033518_2 1542 EEERRRRRREKKKKKKKKKKKKKKKKKKKTTTT 1574 233333333333333333222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2044 (0.125353); expected 326.1 (0.02) Passed bias filter: 704 (0.0431743); expected 326.1 (0.02) Passed Vit filter: 246 (0.0150865); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.73 # Mc/sec: 7732.08 // Query: T033518_3 [L=1972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0056 16.2 0.8 0.013 15.1 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.8 7.7e-07 0.013 2 12 .. 1431 1441 .. 1431 1441 .. 0.98 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 7.7e-07 DUF1725 2 FagKWMELEnI 12 Fag+WM+LE+I T033518_3 1431 FAGTWMKLETI 1441 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1972 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 885 (0.0542745); expected 326.1 (0.02) Passed bias filter: 291 (0.0178462); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.66 # Mc/sec: 8547.81 // Query: T317619_1 [L=933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2147 (0.131669); expected 326.1 (0.02) Passed bias filter: 374 (0.0229363); expected 326.1 (0.02) Passed Vit filter: 117 (0.00717527); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.61 # Mc/sec: 4375.66 // Query: T317619_2 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1517 (0.0930332); expected 326.1 (0.02) Passed bias filter: 341 (0.0209125); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 4101.99 // Query: T317619_3 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 11.0 3.8 0.28 9.8 2.8 1.9 2 Anoctamin Calcium-activated chloride channel 1 10.2 0.0 1 10.2 0.0 4.4 4 DUF4834 Domain of unknown function (DUF4834) Domain annotation for each model (and alignments): >> Anoctamin Calcium-activated chloride channel # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 2.8 3.4e-05 0.28 98 175 .. 592 691 .. 558 700 .. 0.49 2 ? -0.5 0.0 0.045 3.7e+02 226 259 .. 756 789 .. 719 919 .. 0.54 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 3.4e-05 Anoctamin 98 l...................ervtgeeekyyppwkrrlprllvslpvvl....llilllvvgviiyrilal.eefvftptvlnlvlililnevyeklavw 173 + +++ ++++++++ +++ +++++++++ ++i++ ++++ii++i ++ ++ ++t + +++i+i++ + + + T317619_3 592 HnhhhhyqhhhhhhhchhhyH-HHHHRHHHCHHHH-QIIIIIITTITITntntIIIITTITVTIITTITITnTNTIITTITISIITITIITTTITTITII 689 222222222223332222211.2233344444444.4444555554555566433333444444444344434445666668888888888777777766 PP Anoctamin 174 lt 175 +t T317619_3 690 IT 691 55 PP == domain 2 score: -0.5 bits; conditional E-value: 0.045 Anoctamin 226 eecdaggcleelreqLaiilvgkqllnnilevll 259 ++ +++ +++++ ++i+++ ++ +i+ +++ T317619_3 756 HHYHHHHHHHHITTITISITITIFIITTITITMV 789 2222222222222222222222223333333333 PP >> DUF4834 Domain of unknown function (DUF4834) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -13.3 16.3 2 1.6e+04 73 73 .. 551 551 .. 498 627 .. 0.60 2 ? -3.6 2.5 2 1.6e+04 19 20 .. 643 644 .. 623 669 .. 0.52 3 ? 10.2 0.0 0.00013 1 5 77 .. 672 760 .. 664 772 .. 0.56 4 ? -3.8 2.0 2 1.6e+04 70 81 .. 902 913 .. 895 921 .. 0.34 Alignments for each domain: == domain 1 score: -13.3 bits; conditional E-value: 2 DUF4834 73 e 73 + T317619_3 551 H 551 1 PP == domain 2 score: -3.6 bits; conditional E-value: 2 DUF4834 19 ls 20 ++ T317619_3 643 II 644 22 PP == domain 3 score: 10.2 bits; conditional E-value: 0.00013 DUF4834 5 lfilifiiailviglsilsvilrtv........................fglgsrkkssksaqkqfgnstnsnqqktqsrsstkeegeiieeersek 77 +i+i ii+ + ++i+ +i+ t+ + +++++++++++ ++++++++++++++++++ +++++ ++ T317619_3 672 SIITITIITTTITTITIIITIITTItitits*ppppppslslspyhhhhY--------HHHHHHHHHYHHHHHHHHYHHHHHHQHHHHHYHHHHYHH 760 56799999999999999999999999999999999999966544333221........222222223333333333322222222222222222222 PP == domain 4 score: -3.8 bits; conditional E-value: 2 DUF4834 70 ieeersekeakr 81 + ++r+eke+k+ T317619_3 902 KRKKRKEKERKE 913 111222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2053 (0.125905); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 91 (0.00558077); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 3979.54 // Query: T322950_1 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 5542.25 // Query: T322950_2 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5274.08 // Query: T322950_3 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 5355.85 // Query: T138221_1 [L=11194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.46s 00:00:02.72 Elapsed: 00:00:00.77 # Mc/sec: 41589.78 // Query: T138221_2 [L=11193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.47u 0.49s 00:00:03.96 Elapsed: 00:00:01.00 # Mc/sec: 32021.27 // Query: T138221_3 [L=11193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.52s 00:00:03.87 Elapsed: 00:00:00.95 # Mc/sec: 33706.60 // Query: T258958_1 [L=2708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.69 # Mc/sec: 11227.72 // Query: T258958_2 [L=2708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.4 6.9 6.6 9.7 5.8 6.6 1.6 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00059 9.7 6 41 .. 1767 1802 .. 1753 1813 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00059 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258958_2 1767 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1802 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.91 # Mc/sec: 8513.33 // Query: T258958_3 [L=2707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.85 # Mc/sec: 9110.90 // Query: T381574_1 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.75 # Mc/sec: 5786.51 // Query: T381574_2 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 6676.74 // Query: T381574_3 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.65 # Mc/sec: 6676.74 // Query: T099498_1 [L=1104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 4934.93 // Query: T099498_2 [L=1104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 4934.93 // Query: T099498_3 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.71 # Mc/sec: 4444.36 // Query: T173640_1 [L=3451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.40s 00:00:01.66 Elapsed: 00:00:00.67 # Mc/sec: 14735.41 // Query: T173640_2 [L=3451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.066 12.8 1.5 0.14 11.8 1.5 1.4 1 Gly-zipper_YMGG YMGG-like Gly-zipper Domain annotation for each model (and alignments): >> Gly-zipper_YMGG YMGG-like Gly-zipper # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 1.5 8.3e-06 0.14 5 27 .. 906 928 .. 905 941 .. 0.85 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 8.3e-06 XXXXXXXXXXXXXXXXXXXXXXX CS Gly-zipper_YMGG 5 rGAaiGAaaGAvvGaliGsgggk 27 r A+ GAaaGAv+Gal +gg+ T173640_2 906 RAAGRGAAAGAVLGALLHPHGGH 928 56999999999999999876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.85 # Mc/sec: 11614.97 // Query: T173640_3 [L=3451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.67 # Mc/sec: 14735.41 // Query: T182900_1 [L=4143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.41s 00:00:01.95 Elapsed: 00:00:00.75 # Mc/sec: 15803.22 // Query: T182900_2 [L=4142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.39s 00:00:01.99 Elapsed: 00:00:00.84 # Mc/sec: 14106.62 // Query: T182900_3 [L=4142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.34s 00:00:01.74 Elapsed: 00:00:00.74 # Mc/sec: 16012.92 // Query: T196914_1 [L=758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 3188.98 // Query: T196914_2 [L=758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 3236.58 // Query: T196914_3 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.72 # Mc/sec: 3007.84 // Query: T235813_1 [L=6111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.45s 00:00:02.38 Elapsed: 00:00:00.80 # Mc/sec: 21853.17 // Query: T235813_2 [L=6110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.37s 00:00:02.09 Elapsed: 00:00:00.83 # Mc/sec: 21059.84 // Query: T235813_3 [L=6110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.44s 00:00:02.46 Elapsed: 00:00:00.86 # Mc/sec: 20325.20 // Query: T353463_1 [L=1639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1546 (0.0948117); expected 326.1 (0.02) Passed bias filter: 343 (0.0210352); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.41s 00:00:02.20 Elapsed: 00:00:00.89 # Mc/sec: 5268.43 // Query: T353463_2 [L=1638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1326 (0.0813198); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.86 # Mc/sec: 5448.88 // Query: T353463_3 [L=1638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1380 (0.0846314); expected 326.1 (0.02) Passed bias filter: 312 (0.0191341); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.44s 00:00:01.75 Elapsed: 00:00:00.77 # Mc/sec: 6085.77 // Query: T211931_1 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 7596.53 // Query: T211931_2 [L=1486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 7329.64 // Query: T211931_3 [L=1486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 6856.76 // Query: T165335_1 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1776.73 // Query: T165335_2 [L=353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.69 # Mc/sec: 1463.58 // Query: T165335_3 [L=353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.74 # Mc/sec: 1364.69 // Query: T149881_1 [L=5229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 439 (0.0269226); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.43s 00:00:02.31 Elapsed: 00:00:00.78 # Mc/sec: 19178.56 // Query: T149881_2 [L=5228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:00.73 # Mc/sec: 20488.25 // Query: T149881_3 [L=5228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 453 (0.0277812); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.36s 00:00:02.06 Elapsed: 00:00:00.77 # Mc/sec: 19423.92 // Query: T277360_1 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 5689.27 // Query: T277360_2 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 4938.45 // Query: T277360_3 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 4858.80 // Query: T222349_1 [L=1948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 8707.65 // Query: T222349_2 [L=1947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 8313.49 // Query: T222349_3 [L=1947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 7845.12 // Query: T164587_1 [L=7021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.41s 00:00:02.63 Elapsed: 00:00:00.88 # Mc/sec: 22824.87 // Query: T164587_2 [L=7021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.35s 00:00:02.48 Elapsed: 00:00:00.90 # Mc/sec: 22317.65 // Query: T164587_3 [L=7020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.44s 00:00:02.59 Elapsed: 00:00:00.83 # Mc/sec: 24196.42 // Query: T062844_1 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2291 (0.1405); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 3028.08 // Query: T062844_2 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 2937.69 // Query: T062844_3 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 726 (0.0445235); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.75 # Mc/sec: 2624.33 // Query: T032084_1 [L=1129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.64 # Mc/sec: 5046.68 // Query: T032084_2 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 5122.25 // Query: T032084_3 [L=1128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 6205.80 // Query: T190389_1 [L=1591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7341.26 // Query: T190389_2 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 7336.64 // Query: T190389_3 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.79 # Mc/sec: 5757.87 // Query: T315768_1 [L=2811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:00.81 # Mc/sec: 9928.14 // Query: T315768_2 [L=2811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 489 (0.029989); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 11326.47 // Query: T315768_3 [L=2810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 11012.24 // Query: T205078_1 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.72 # Mc/sec: 5360.08 // Query: T205078_2 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-73 245.5 4.4 1e-72 244.9 4.4 1.2 1 Transposase_22 L1 transposable element 8.4e-08 32.0 0.9 1.5e-07 31.2 0.9 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.012 15.8 0.0 0.022 14.9 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 244.9 4.4 1.9e-76 1e-72 225 367 .. 891 1035 .. 885 1036 .. 0.98 Alignments for each domain: == domain 1 score: 244.9 bits; conditional E-value: 1.9e-76 HHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETT CS Transposase_22 225 keanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyP 317 ++an++iqei+r P+r+ s+ra++rhiivr+tkv++k+k+l+a rek rvt kGkPirltadlsaetl+ar+ew+++++ilkek+fqPr++yP T205078_2 891 RQANIQIQEIQRMPQRYFSRRATPRHIIVRFTKVEMKEKMLRADREKSRVTHKGKPIRLTADLSAETLQARKEWGPMFNILKEKNFQPRISYP 983 89******************************************************************************************* PP TEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 318 aklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 akl +i++Geik f dk++lrd+++trPalk+llke ++er+ yq+l+++ T205078_2 984 AKLNFISEGEIKSFTDKQMLRDFVTTRPALKELLKEtlNMERNSWYQPLQKQ 1035 *************************************************986 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.9 2.7e-11 1.5e-07 2 118 .. 1168 1291 .. 1167 1292 .. 0.79 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 2.7e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ + L + ++ +l + ++k++ tf s + T205078_2 1168 TILNIYAPNTG-APRFIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDIQALNSAQHQADLIDIyrtLHPKSTeYTFFSVPHh 1257 7999***9999.888888888888888887.8**************9988777877778888877777776445553333333666555555 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+++ ++ ++++SDH++i T205078_2 1258 iYSKIDHIVGSKALLRKckRTEIITNCLSDHSAI 1291 78***************98666779******998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 4e-06 0.022 61 113 .] 1128 1288 .. 1012 1288 .. 0.73 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 4e-06 TTSSEEEEEECSEEEEE.....................................................EEEEEE-SS............... CS xxxxxxxxxxxxxxxxx.....................................................xxxxxxxxx............... RF Exo_endo_phos 61 kgqggvavlsrfpltsl.....................................................vivlGDfNa............... 86 +++ gva+ ++ + + + i++GDfN+ T205078_2 1128 NKKAGVAIPVSDKTDFKptkirrdkeghyimikglirqeltilniyapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrstrqkvnk 1221 3333333333333322245555555555555555555557777777777777777777777777777777*********999999999999999 PP .......................................-BEEEEEEHHHHTTEEEEEEECCH.SSB CS .......................................xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 .......................................rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l ++ + + + SDH T205078_2 1222 diqalnsaqhqadlidiyrtlhpksteytffsvphhiysKIDHIVGSKALLRKCKRTEIITNClSDH 1288 99999999999999999999999999999999999888888******97666666665555447888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 5847.36 // Query: T205078_3 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-47 162.6 19.0 2.8e-47 161.2 19.0 1.5 1 Transposase_22 L1 transposable element 0.00092 19.6 7.6 0.0023 18.3 7.6 1.6 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.0053 14.9 9.7 0.021 12.9 9.5 1.7 1 EzrA Septation ring formation regulator, EzrA ------ inclusion threshold ------ 0.011 15.9 5.3 0.023 14.8 5.3 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.029 13.8 4.9 0.046 13.1 4.9 1.2 1 PspA_IM30 PspA/IM30 family 0.032 14.4 0.7 0.032 14.4 0.7 2.5 2 Tup_N Tup N-terminal 0.27 11.2 8.7 0.5 10.3 8.7 1.3 1 Nup54 Nucleoporin complex subunit 54 0.31 10.9 6.1 0.64 9.9 0.6 2.4 2 HSBP1 Heat shock factor binding protein 1 1.8 6.9 5.6 2.7 6.3 5.6 1.2 1 DUF342 Protein of unknown function (DUF342) 1.9 8.6 12.2 7.1 6.8 1.9 2.6 2 XhlA Haemolysin XhlA 2.1 8.2 11.6 2.8 7.8 1.0 2.4 2 Prefoldin_2 Prefoldin subunit 3.9 7.4 5.6 16 5.4 1.8 1.9 2 DUF1664 Protein of unknown function (DUF1664) 5.3 7.3 8.5 4.6 7.5 0.7 2.1 2 BLOC1_2 Biogenesis of lysosome-related organelles com 5.9 6.8 13.8 0.15 11.9 6.8 1.9 1 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.2 19.0 2.4e-50 2.8e-47 9 225 .. 704 892 .. 697 913 .. 0.84 Alignments for each domain: == domain 1 score: 161.2 bits; conditional E-value: 2.4e-50 XXXXXXXXX.XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............ CS Transposase_22 9 nrkqdnsks.serstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskq 98 rk +nsk s +s+P+ke+ss Pat e++++++df+elr+e+++++ +++elk +++++ ke e +k ++e + +n k T205078_3 704 SRKAENSKN*S-TSSPPKERSSPPAT--EQSWMENDFDELREEGFRRSvktNFSELKKDVRTHRKEAEnLEKRLDEWLT--------RMNNIEKT 787 56666665443.67899*********..******************973335666676666666666655555555333........33344443 PP ......XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE CS Transposase_22 99 vmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlr 193 ++l+elkt ++el + + s+ssr+d++eervs +e++++e++++ k+rekr+k+++qslq+i+d+vkrPnlr T205078_3 788 ----LNDLMELKTMARELCDSCT------------------SFSSRLDQVEERVSVIENQMNEMKQKEKFREKRVKRNKQSLQEIRDYVKRPNLR 860 ....3489**************9..................9***************************************************** PP EES----TT--HHHHHHHHHHHHHHH-HHHHH CS Transposase_22 194 liGvdesedeqlkklenilnkiieenfPnlkk 225 liG++es+ e+++k+en+l++ii+enfPnl + T205078_3 861 LIGIPESDGENGTKMENTLKDIIQENFPNLGR 892 *****************************987 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 7.6 1.9e-06 0.0023 4 96 .. 754 855 .. 752 856 .. 0.80 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 1.9e-06 Syntaxin-6_N 4 fevkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveev 91 e k++V+ k++++le+ +++w +++ + +++ + el+ +eL ++ s + l+++ee v+++e+ ++k k +ek ++r ++ ++e+ T205078_3 754 SELKKDVRthrKEAENLEKRLDEWlTRMNNIEKTlNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENqmneMKQKEKFREKRVKRNKQSLQEI 850 56666665111566777777777855777777778799*****************************998855434588999*************** PP Syntaxin-6_N 92 reevk 96 r+ vk T205078_3 851 RDYVK 855 *9987 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.9 9.5 1.8e-05 0.021 346 458 .. 767 884 .. 748 886 .. 0.75 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 1.8e-05 HHHHHHHHHHHHHHHHHHHHHHS...-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS..-S-TT CS EzrA 346 lrelekelkelekdyeeleekle...ekkvaYSelqeeleeleekleeieekqeelleslkslrkdEkrAreqldeikkelkeikrkieksnL..PgiPe 440 +++lek+l+e ++++++e+ l+ e k+ el + + +++++l+++ee++ +++++++++++Ek ++++++ k+ l+ei+ ++++ nL giPe T205078_3 767 AENLEKRLDEWLTRMNNIEKTLNdlmELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNEMKQKEKFREKRVKRNKQSLQEIRDYVKRPNLrlIGIPE 866 444444444444444444443331113444456999999**************************************************97751168899 PP THHHHSTTTSTTTHHHHH CS EzrA 441 syleelkeasdeieelak 458 s e+ +++++ ++++++ T205078_3 867 SDGENGTKMENTLKDIIQ 884 988888888888888876 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 5.3 2e-05 0.023 6 100 .. 732 829 .. 730 832 .. 0.91 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2e-05 HHHH-HHHHHHHHCCCT...CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRg...edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ +++ ++ ++l+++l+e ++ N++ k+ +++ k a el ++ + + +l+++e++++ +e+++++ T205078_3 732 WMENDFDELREEGFRRSvktNFSELKKDVRTHRKEAENLEKRLDEWLTRMNNIEKTLNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNE 828 56778888888887777767889999999999***************************************************************98 PP H CS Seryl_tRNA_N 100 l 100 + T205078_3 829 M 829 6 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 4.9 4e-05 0.046 35 137 .. 733 835 .. 733 855 .. 0.88 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 4e-05 PspA_IM30 35 mqselakarqa..laqviarqkqlerkleeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelk 132 m+++ +++r++ + +v+++ +l++++++ +++a++lek+ + Lt+ ++ +++ l + +l+ a++l + + + s +q+++ ++ e +++e+k T205078_3 733 MENDFDELREEgfRRSVKTNFSELKKDVRTHRKEAENLEKRLDEWLTRMNN--IEKTLNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNEMK 830 666777777764456799*****************************9988..9********************************************** PP PspA_IM30 133 akkel 137 +k + T205078_3 831 QKEKF 835 *9875 PP >> Tup_N Tup N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.7 2.8e-05 0.032 9 57 .. 749 797 .. 746 803 .. 0.92 2 ? 1.1 3.4 0.38 4.4e+02 6 48 .. 812 854 .. 809 856 .. 0.87 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.8e-05 Tup_N 9 ikqEfdalsqeasslkaqkdeyeskinsqiqElqqirqtlyeLeeahrk 57 +k+ f++l++++ + +++ +++e+++ + ++ +++i +tl +L e + T205078_3 749 VKTNFSELKKDVRTHRKEAENLEKRLDEWLTRMNNIEKTLNDLMELKTM 797 9*****************************************9876655 PP == domain 2 score: 1.1 bits; conditional E-value: 0.38 Tup_N 6 LdaikqEfdalsqeasslkaqkdeyeskinsqiqElqqirqtl 48 Ld++ + + ++++++ +k++++ e++++ + q lq+ir + T205078_3 812 LDQVEERVSVIENQMNEMKQKEKFREKRVKRNKQSLQEIRDYV 854 7888888899999******888888888***********9876 PP >> Nup54 Nucleoporin complex subunit 54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 8.7 0.00043 0.5 31 128 .. 753 845 .. 750 855 .. 0.86 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00043 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS-HHH CS Nup54 31 FedLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakrrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlndpaq 128 F++L+k v++ +ke++++++rl+e +r++++e +t++ l ++k++ el ++++ ++l+ ++ r + ++++ +e++++ + e+++++++q T205078_3 753 FSELKKDVRTHRKEAENLEKRLDEWLTRMNNIE-----KTLNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNEMKQKEKFREKRVKRNKQ 845 99*******************************.....999999999999999999999999999999999999999999998888777777775433 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.6 0.00055 0.64 24 48 .. 769 793 .. 767 796 .. 0.90 2 ? 3.6 0.6 0.051 59 27 48 .. 810 831 .. 794 834 .. 0.76 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00055 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+D+ +r++++Ek+++dlm+ T205078_3 769 NLEKRLDEWLTRMNNIEKTLNDLME 793 6678********************7 PP == domain 2 score: 3.6 bits; conditional E-value: 0.051 HSBP1 27 sriDdMssriDdLEksiadlmt 48 sr+D+ ++r+ +E++++++ + T205078_3 810 SRLDQVEERVSVIENQMNEMKQ 831 6888888888888888888766 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 5.6 0.0023 2.7 330 417 .. 745 835 .. 739 870 .. 0.68 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0023 DUF342 330 ldepelkeklkeleeeleeleeeleklkkk....ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeaki 417 ++ ++k +++el+++++ ++e e+l+k+ ++++++++++ + +e k + +l + +++++l ++ee+ ++++++++k+++k T205078_3 745 FR-RSVKTNFSELKKDVRTHRKEAENLEKRldewLTRMNNIEKTLNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNEMKQKEKF 835 55.67777788888888888888888888866666666666666666677777777777777888888888888888888888888333332 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 3.0 0.0079 9.3 7 45 .. 754 792 .. 748 796 .. 0.86 2 ? 6.8 1.9 0.0061 7.1 4 46 .. 810 852 .. 807 855 .. 0.68 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0079 XhlA 7 erietkldnleervdkleekaaeaeekiknleedlkkie 45 ++++++ +++++ + le++ +e +++ n+e++l+++ T205078_3 754 SELKKDVRTHRKEAENLEKRLDEWLTRMNNIEKTLNDLM 792 57899999999999999999************9999986 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0061 XhlA 4 erlerietkldnleervdkleekaaeaeekiknleedlkkies 46 rl ++e+++ +e+++++ ++k+ e+++k + l +i + T205078_3 810 SRLDQVEERVSVIENQMNEMKQKEKFREKRVKRNKQSLQEIRD 852 5677777777777777777777777777777777777777765 PP >> Prefoldin_2 Prefoldin subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 1.0 0.0024 2.8 60 103 .. 749 792 .. 745 794 .. 0.84 2 ? 4.6 3.8 0.023 27 65 101 .. 813 849 .. 806 851 .. 0.92 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0024 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS Prefoldin_2 60 keevkeeLeerketlekeiktlekqleklekeleelkeelqkkl 103 +++ +eL+++ t ke ++lek+l++ +++++++++l+ ++ T205078_3 749 VKTNFSELKKDVRTHRKEAENLEKRLDEWLTRMNNIEKTLNDLM 792 55555789999999999999999999999999999999999865 PP == domain 2 score: 4.6 bits; conditional E-value: 0.023 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS Prefoldin_2 65 eeLeerketlekeiktlekqleklekeleelkeelqk 101 +++eer +e ++++++++++ ek+++ k++lq+ T205078_3 813 DQVEERVSVIENQMNEMKQKEKFREKRVKRNKQSLQE 849 799******************************9997 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.1 0.099 1.2e+02 83 122 .. 747 786 .. 736 788 .. 0.84 2 ? 5.4 1.8 0.014 16 37 101 .. 799 852 .. 786 861 .. 0.45 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.099 DUF1664 83 keikeevtevredlseikedvesvkeavegLeskleeiee 122 +++k + +e+++d+++ +++ e++++ + ++ +++++ie+ T205078_3 747 RSVKTNFSELKKDVRTHRKEAENLEKRLDEWLTRMNNIEK 786 5678888999999999999999999999999999999886 PP == domain 2 score: 5.4 bits; conditional E-value: 0.014 DUF1664 37 rslsdavasvskqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseike 101 r+l d ++s s++l+qv ++r+ ++++++e+k+ k ++ v+ +++l+ei++ T205078_3 799 RELCDSCTSFSSRLDQV-----------EERVSVIENQMNEMKQKEKFREKRVKRNKQSLQEIRD 852 33334444444444444...........4444444444444444444444444444444444443 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 0.7 0.0039 4.6 31 84 .. 748 801 .. 743 807 .. 0.76 2 ? 3.5 1.5 0.071 83 33 74 .. 809 854 .. 799 856 .. 0.75 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0039 BLOC1_2 31 aasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseL 84 ++ +++ +lk+ + +ke+e+l+++ +e +++i++ +++ eL++++ eL T205078_3 748 SVKTNFSELKKDVRTHRKEAENLEKRLDEWLTRMNNIEKTLNDLMELKTMAREL 801 567889999999999999999999977777777777777777777777777766 PP == domain 2 score: 3.5 bits; conditional E-value: 0.071 BLOC1_2 33 sekykklkdvaaslekeleklnekye....elqpylqqidqiekqv 74 s++ +++++ ++ +e++++++++k++ ++ ++q++++i + v T205078_3 809 SSRLDQVEERVSVIENQMNEMKQKEKfrekRVKRNKQSLQEIRDYV 854 6788999999999999999999986433236777777777777665 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 6.8 0.00013 0.15 19 100 .. 778 855 .. 749 857 .. 0.73 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00013 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX CS Laminin_II 19 laplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIa 100 l+ + +n+e+t ++l e+++ ++e + +++ ++++++ v+ +e++++++ +k ++ ++++++++ +++++ei+ ++ T205078_3 778 LTRM-NNIEKTLNDLMELKTMARELCDSCTSFSSRLDQVEERVSVIENQMNEMKQK-EKFREKRVKRN--KQSLQEIRDYVK 855 3333.578888888888888888888888888888888888888888888888888.88888888877..899999998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1208 (0.0740832); expected 326.1 (0.02) Passed bias filter: 388 (0.0237949); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 1.25u 0.41s 00:00:01.66 Elapsed: 00:00:00.78 # Mc/sec: 4944.10 // Query: T369897_1 [L=3773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 581 (0.0356311); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.81 # Mc/sec: 13325.82 // Query: T369897_2 [L=3773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 473 (0.0290077); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.63 # Mc/sec: 17133.19 // Query: T369897_3 [L=3773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.50 # Mc/sec: 21587.82 // Query: T156054_1 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 4022.33 // Query: T156054_2 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 4272.98 // Query: T156054_3 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 4183.96 // Query: T277131_1 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.27s 00:00:01.53 Elapsed: 00:00:00.56 # Mc/sec: 21516.45 // Query: T277131_2 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.57 # Mc/sec: 21145.48 // Query: T277131_3 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.1 0.1 0.1 12.1 0.1 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 6.3e-06 0.1 1 13 [. 4168 4180 .. 4168 4185 .. 0.89 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 6.3e-06 DUF1725 1 kFagKWMELEnII 13 +Fa++WM LE I+ T277131_3 4168 SFAATWMQLEAIL 4180 7***********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.26s 00:00:01.48 Elapsed: 00:00:00.56 # Mc/sec: 21516.45 // Query: T201382_1 [L=4435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.27s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 22656.75 // Query: T201382_2 [L=4434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.56 # Mc/sec: 22254.25 // Query: T201382_3 [L=4434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.57 # Mc/sec: 21870.55 // Query: T102861_1 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 10772.13 // Query: T102861_2 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 9822.18 // Query: T102861_3 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.77 # Mc/sec: 7270.97 // Query: T001427_1 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 5823.49 // Query: T001427_2 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 6482.75 // Query: T001427_3 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 6027.82 // Query: T000127_1 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.66 # Mc/sec: 10476.71 // Query: T000127_2 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 11152.62 // Query: T000127_3 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.63 # Mc/sec: 10975.60 // Query: T352946_1 [L=4344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.88 # Mc/sec: 14122.10 // Query: T352946_2 [L=4344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:00.77 # Mc/sec: 16139.54 // Query: T352946_3 [L=4344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.43s 00:00:01.94 Elapsed: 00:00:00.83 # Mc/sec: 14972.83 // Query: T369017_1 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 4248.33 // Query: T369017_2 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4809.43 // Query: T369017_3 [L=890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4546.68 // Query: T111693_1 [L=5500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.40s 00:00:02.27 Elapsed: 00:00:00.81 # Mc/sec: 19425.39 // Query: T111693_2 [L=5500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.44s 00:00:02.26 Elapsed: 00:00:00.86 # Mc/sec: 18296.01 // Query: T111693_3 [L=5499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.36s 00:00:02.06 Elapsed: 00:00:00.70 # Mc/sec: 22473.86 // Query: T353453_1 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 12.5 0.1 0.19 12.5 0.1 2.4 2 TT_ORF2 TT viral ORF2 Domain annotation for each model (and alignments): >> TT_ORF2 TT viral ORF2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.2e-05 0.19 30 110 .. 841 920 .. 835 922 .. 0.68 2 ? -10.9 8.8 1 1.6e+04 83 93 .. 1020 1030 .. 1004 1041 .. 0.47 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.2e-05 TT_ORF2 30 gdplkHlidlatqlsleepqgkrpkr...klilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaededldegd 110 d l+ l++la++l +pq +++ + +++l p lp++ +++ k l + g+d++ g +++gdg +gd++d+d d+gd T353453_1 841 LDLLAMLFNLANVLPHRQPQWPGASPswtTSALDTPPYLPLHHATS----KALVQVGTDGKLGSDDGGDGGGGDDDDNDNDDGD 920 5667778888888887775555444400155556666666666666....3444567899999999**********99999987 PP == domain 2 score: -10.9 bits; conditional E-value: 1 TT_ORF2 83 gedaetgpsee 93 g d+++g +++ T353453_1 1020 GGDGNDGIDGD 1030 33333322222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1536 (0.0941985); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 149 (0.00913774); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.80u 0.43s 00:00:02.23 Elapsed: 00:00:00.79 # Mc/sec: 7213.64 // Query: T353453_2 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1231 (0.0754937); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:00.83 # Mc/sec: 6865.99 // Query: T353453_3 [L=1991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1291 (0.0791733); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 9654.09 // Query: T367903_1 [L=3397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 15674.58 // Query: T367903_2 [L=3396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-20 73.1 2.1 1.4e-19 69.9 0.1 2.8 2 CD225 Interferon-induced transmembrane protein Domain annotation for each model (and alignments): >> CD225 Interferon-induced transmembrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.9 0.1 8.3e-24 1.4e-19 2 66 .. 277 341 .. 276 343 .. 0.97 2 ? 1.7 0.3 0.016 2.7e+02 4 25 .. 1913 1940 .. 1912 1941 .. 0.91 Alignments for each domain: == domain 1 score: 69.9 bits; conditional E-value: 8.3e-24 CD225 2 pkdylvwsifntlfcclplGivAivySvksrdrkavGdlegAqsasstAkilniialvlgillii 66 pkdy++ s+++tlfccl++G++AivyS+++r + +Gdl++A++as++A+ l ++l++g+++ + T367903_2 277 PKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLFGVFVST 341 99***********************************************************9875 PP == domain 2 score: 1.7 bits; conditional E-value: 0.016 CD225 4 dylvwsifntlf........cclplGivAi 25 ++lv s+f+++f cc G+ A+ T367903_2 1913 SHLVASLFTFFFffetesrsCCP--GWSAM 1940 59**********99*****9999..99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.78 # Mc/sec: 12455.61 // Query: T367903_3 [L=3396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.41s 00:00:01.86 Elapsed: 00:00:00.78 # Mc/sec: 12455.61 // Query: T289501_1 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 6420.97 // Query: T289501_2 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.70 # Mc/sec: 5778.88 // Query: T289501_3 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 8084.71 // Query: T369015_1 [L=886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.73 # Mc/sec: 3472.19 // Query: T369015_2 [L=886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 4088.22 // Query: T369015_3 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.76 # Mc/sec: 3331.36 // Query: T195953_1 [L=2474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 10563.72 // Query: T195953_2 [L=2474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.75 # Mc/sec: 9436.92 // Query: T195953_3 [L=2473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.42s 00:00:01.90 Elapsed: 00:00:00.85 # Mc/sec: 8323.33 // Query: T259091_1 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4131.70 // Query: T259091_2 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 4131.70 // Query: T259091_3 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 3405.75 // Query: T235273_1 [L=1024] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1024 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 4506.91 // Query: T235273_2 [L=1023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4368.10 // Query: T235273_3 [L=1023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 4720.37 // Query: T069822_1 [L=10168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.45s 00:00:02.89 Elapsed: 00:00:00.85 # Mc/sec: 34222.26 // Query: T069822_2 [L=10168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.98u 0.40s 00:00:03.38 Elapsed: 00:00:01.01 # Mc/sec: 28800.91 // Query: T069822_3 [L=10168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.62 10.2 2.2 1.2 9.2 2.2 1.4 1 FXR_C1 Fragile X-related 1 protein C-terminal region 2 Domain annotation for each model (and alignments): >> FXR_C1 Fragile X-related 1 protein C-terminal region 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 2.2 7.6e-05 1.2 41 69 .. 7610 7638 .. 7606 7642 .. 0.87 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 7.6e-05 FXR_C1 41 anRRRRsRRRRtDedatlmDGmsesDnas 69 +RRR RR R De+ + DG se +s T069822_3 7610 CRKRRRKRRWRLDEEVVACDGKSEMGRMS 7638 56899******************987777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.65u 0.46s 00:00:03.11 Elapsed: 00:00:00.80 # Mc/sec: 36361.15 // Query: T229484_1 [L=595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.68 # Mc/sec: 2503.23 // Query: T229484_2 [L=595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 2618.76 // Query: T229484_3 [L=595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 3273.45 // Query: T263544_1 [L=1492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.8 6.9 8.5 0.16 12.1 1.6 1.8 2 Metallothi_Euk2 Eukaryotic metallothionein Domain annotation for each model (and alignments): >> Metallothi_Euk2 Eukaryotic metallothionein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.8 1 1.6e+04 42 53 .. 186 197 .. 184 198 .. 0.72 2 ? 12.1 1.6 1e-05 0.16 15 35 .. 371 391 .. 365 398 .. 0.87 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 Metallothi_Euk2 42 sqckscGekckc 53 + c +cG + +c T263544_1 186 ASCTACGTRLNC 197 468888887776 PP == domain 2 score: 12.1 bits; conditional E-value: 1e-05 Metallothi_Euk2 15 dsckcGatcvkscsGgekckc 35 dsc c + c +sc G e c+ T263544_1 371 DSCTCPSACFPSCKGFEWCQQ 391 9*****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 755 (0.046302); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 6097.65 // Query: T263544_2 [L=1492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.79 # Mc/sec: 5402.99 // Query: T263544_3 [L=1491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 664 (0.0407212); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.82 # Mc/sec: 5201.83 // Query: T182733_1 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 7811.66 // Query: T182733_2 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:00.73 # Mc/sec: 7704.65 // Query: T182733_3 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.65 # Mc/sec: 8652.91 // Query: T369022_1 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5098.41 // Query: T369022_2 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5490.59 // Query: T369022_3 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.77 # Mc/sec: 3707.93 // Query: T194282_1 [L=5055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.79 # Mc/sec: 18305.69 // Query: T194282_2 [L=5055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.41s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 17635.97 // Query: T194282_3 [L=5055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.40s 00:00:01.98 Elapsed: 00:00:00.71 # Mc/sec: 20368.30 // Query: T194238_1 [L=5294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 674 (0.0413345); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.25u 0.46s 00:00:02.71 Elapsed: 00:00:00.92 # Mc/sec: 16462.21 // Query: T194238_2 [L=5293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.47s 00:00:02.20 Elapsed: 00:00:00.91 # Mc/sec: 16639.97 // Query: T194238_3 [L=5293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.42s 00:00:02.19 Elapsed: 00:00:00.76 # Mc/sec: 19924.18 // Query: T201385_1 [L=4444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4444 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.33s 00:00:01.86 Elapsed: 00:00:00.91 # Mc/sec: 13970.91 // Query: T201385_2 [L=4443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:00.74 # Mc/sec: 17176.58 // Query: T201385_3 [L=4443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.47s 00:00:02.06 Elapsed: 00:00:00.82 # Mc/sec: 15500.81 // Query: T229466_1 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.74 # Mc/sec: 8520.63 // Query: T229466_2 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.99 9.0 7.0 2.2 7.9 7.0 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 7.0 0.00013 2.2 1 25 [. 1504 1528 .. 1503 1530 .. 0.89 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00013 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T229466_2 1504 GRKEGREGGREEGRKEGRKEGRKEG 1528 7789999999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.73 # Mc/sec: 8637.36 // Query: T229466_3 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 9007.53 // Query: T291742_1 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 10319.42 // Query: T291742_2 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.79 # Mc/sec: 9143.79 // Query: T291742_3 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0078 16.1 0.2 0.032 14.1 0.2 2.1 1 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF Domain annotation for each model (and alignments): >> DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.2 2e-06 0.032 11 55 .. 2247 2291 .. 2241 2295 .. 0.89 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 2e-06 DUF2116 11 kaIpldesfCsekCqeeyekkrkkvarsqqilfgililllavvlv 55 + Ip+ +s+ C +e++r+ ++++ i+f+i+i++ +++ + T291742_3 2247 NRIPPADSLMHFSCVRSWESRRRSTIQTRGIVFLIVIIVSLIYSF 2291 569999999999**************************9888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.29s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 9895.34 // Query: T297822_1 [L=6393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.40s 00:00:02.21 Elapsed: 00:00:00.83 # Mc/sec: 22035.28 // Query: T297822_2 [L=6393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.32s 00:00:01.85 Elapsed: 00:00:00.65 # Mc/sec: 28137.36 // Query: T297822_3 [L=6392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00034 20.1 0.0 0.00055 19.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0098 15.3 0.0 0.018 14.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 6.8e-08 0.00055 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 6.8e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297822_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 2.2e-06 0.018 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.2e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297822_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.53u 0.36s 00:00:01.89 Elapsed: 00:00:00.69 # Mc/sec: 26502.07 // Query: T023326_1 [L=2636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 12163.14 // Query: T023326_2 [L=2636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.63 # Mc/sec: 11970.08 // Query: T023326_3 [L=2635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.61 # Mc/sec: 12357.85 // Query: T017073_1 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 4654.91 // Query: T017073_2 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4904.28 // Query: T017073_3 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4818.24 // Query: T090321_1 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-46 156.8 26.6 1.8e-38 130.4 13.6 3.0 3 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.2 0.4 6.5e+03 29 54 .. 307 331 .. 304 334 .. 0.71 2 ! 41.5 5.1 6.3e-15 1e-10 15 56 .. 617 658 .. 614 658 .. 0.95 3 ! 130.4 13.6 1.1e-42 1.8e-38 1 89 [] 645 732 .. 645 732 .. 0.98 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.4 Colipase-like 29 ClknseskekfCkareiflqClklrk 54 C+ ++e++ + k+r++++ +++ + T090321_1 307 CVCKRERE-REMKPRSVAQAGVQWHD 331 77776544.44589999999999876 PP == domain 2 score: 41.5 bits; conditional E-value: 6.3e-15 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090321_1 617 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 658 567*************************************97 PP == domain 3 score: 130.4 bits; conditional E-value: 1.1e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090321_1 645 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 732 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 465 (0.0285171); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5019.00 // Query: T090321_2 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 4932.47 // Query: T090321_3 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5019.00 // Query: T183045_1 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.79 # Mc/sec: 6565.42 // Query: T183045_2 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.78 # Mc/sec: 6649.60 // Query: T183045_3 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 7979.52 // Query: T143145_1 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 2783.63 // Query: T143145_2 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.67 # Mc/sec: 2617.45 // Query: T143145_3 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 2918.05 // Query: T132267_1 [L=739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 3252.54 // Query: T132267_2 [L=739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 3409.92 // Query: T132267_3 [L=738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4060.18 // Query: T057941_1 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.62 # Mc/sec: 8490.21 // Query: T057941_2 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.77 # Mc/sec: 6836.27 // Query: T057941_3 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.76 # Mc/sec: 6926.22 // Query: T261593_1 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 3167.64 // Query: T261593_2 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3902.99 // Query: T261593_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-23 82.0 1.0 1.7e-12 46.9 0.2 2.6 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.9 0.2 1e-16 1.7e-12 9 48 .. 224 263 .. 218 263 .. 0.97 2 ! 33.0 0.0 2.2e-12 3.6e-08 50 79 .. 402 431 .. 401 432 .. 0.96 Alignments for each domain: == domain 1 score: 46.9 bits; conditional E-value: 1e-16 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyefl 48 aqWld++e k++pkp+lhq+kvm+tVw s+++li+y+fl T261593_3 224 AQWLDQEEVSKHFPKPNLHQEKVMITVWGSSASLIHYSFL 263 8**************************************8 PP == domain 2 score: 33.0 bits; conditional E-value: 2.2e-12 Transposase_1 50 pgetitsevYaqqldklrqklqekrpalvn 79 pgetitse+Yaq +d+++qklq+++palvn T261593_3 402 PGETITSEKYAQKIDEMHQKLQCLQPALVN 431 89**************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 3464.78 // Query: T221958_1 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 2779.09 // Query: T221958_2 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2992.87 // Query: T221958_3 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.45 # Mc/sec: 3452.07 // Query: T249671_1 [L=4277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.78 # Mc/sec: 15686.88 // Query: T249671_2 [L=4277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.39s 00:00:02.11 Elapsed: 00:00:00.85 # Mc/sec: 14395.02 // Query: T249671_3 [L=4276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 646 (0.0396173); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.42s 00:00:02.34 Elapsed: 00:00:00.86 # Mc/sec: 14224.31 // Query: T250479_1 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-15 57.9 0.2 4.1e-15 56.1 0.2 1.8 1 RNase_H RNase H 3.7e-06 27.0 0.0 6.9e-06 26.1 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.1 0.2 5e-19 4.1e-15 14 142 .. 3 134 .. 1 135 [. 0.80 Alignments for each domain: == domain 1 score: 56.1 bits; conditional E-value: 5e-19 CTTTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT.THHHHH.HH CS RNase_H 14 gnsgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk.nkelae.ll 107 + +ge+gag+ v+ + + +++l++a+++++aEL A+i aL+ + + e+vniytDS+Yv+++ +q vh++ k+++ +s +k+ k ++e+ + l T250479_1 3 NPQGERGAGYaVVTLD-TVVEARSLPQATSAQKAELVAFIRALElS--EVETVNIYTDSRYVFST-LQ-VHGA**KEKGL-LNSGGKDRK*QQEILQ*L- 95 458999****777766.33555778899****************55..89**************4.44.8*****99999.555665444445665553. PP HHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 108 kelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +++ k+++v ++h++gH+ + gN +aD+ A++aa T250479_1 96 ETVWKPHEVAVMHCRGHQRAstllGLGNSRADSEARKAA 134 3679*************766578977**********998 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 0.0 8.5e-10 6.9e-06 70 117 .. 317 364 .. 312 366 .. 0.95 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 8.5e-10 rve 70 vlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 + sDng+ + + +++ ++ lgi+ +++++ pq+ GkvEr+nr +k+ T250479_1 317 IGSDNGPVFLAALVQKTAKVLGITRKPHAASWPQSSGKVERMNRAIKN 364 569******************************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 2476.41 // Query: T250479_2 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 18.8 0.0 0.0019 18.3 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 1.2e-07 0.0019 3 50 .. 254 299 .. 252 311 .. 0.86 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 1.2e-07 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdast 50 +p e +qvD+t+++ + gg++y+lv ++s+++ a+++++e++ ++ T250479_2 254 APFEGLQVDFTEMP--KCGGNKYVLVLGRTYSGWVEAYPTRTEKAGEE 299 79999*********..9999***********************66655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 2438.31 // Query: T250479_3 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 3042.38 // Query: T006617_1 [L=509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (509 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 2426.94 // Query: T006617_2 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 2382.46 // Query: T006617_3 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2463.22 // Query: T089564_1 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 4324.25 // Query: T089564_2 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 3811.21 // Query: T089564_3 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 3626.79 // Query: T001779_1 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 2125.89 // Query: T001779_2 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 75 (0.00459953); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 1896.95 // Query: T001779_3 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 2016.65 // Query: T090256_1 [L=7382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.42s 00:00:02.58 Elapsed: 00:00:00.79 # Mc/sec: 26732.46 // Query: T090256_2 [L=7381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.34u 0.42s 00:00:02.76 Elapsed: 00:00:00.95 # Mc/sec: 22227.14 // Query: T090256_3 [L=7381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.42s 00:00:02.58 Elapsed: 00:00:00.85 # Mc/sec: 24842.10 // Query: T002437_1 [L=3927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.64 # Mc/sec: 17553.87 // Query: T002437_2 [L=3927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.42s 00:00:01.95 Elapsed: 00:00:00.88 # Mc/sec: 12766.45 // Query: T002437_3 [L=3927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.35s 00:00:01.83 Elapsed: 00:00:00.76 # Mc/sec: 14782.21 // Query: T324660_1 [L=1886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-10 39.1 107.6 1.4e-05 25.1 1.4 9.4 10 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 1.1 0.073 1.2e+03 35 49 .. 361 375 .. 357 376 .. 0.83 2 ! 25.1 1.4 8.6e-10 1.4e-05 27 50 .] 394 417 .. 375 417 .. 0.83 3 ! 16.8 11.5 3.2e-07 0.0052 3 38 .. 424 458 .. 422 472 .. 0.89 4 ! 16.9 17.1 3e-07 0.0049 2 46 .. 1307 1354 .. 1306 1359 .. 0.91 5 ? -3.5 0.1 0.73 1.2e+04 32 46 .. 1495 1509 .. 1494 1510 .. 0.81 6 ? -3.1 0.1 0.55 8.9e+03 13 37 .. 1530 1561 .. 1522 1562 .. 0.76 7 ? 0.8 0.3 0.032 5.1e+02 6 29 .. 1571 1596 .. 1569 1618 .. 0.66 8 ! 10.9 14.0 2.2e-05 0.36 5 48 .. 1691 1753 .. 1688 1755 .. 0.92 9 ! 7.7 1.1 0.00023 3.7 8 37 .. 1735 1763 .. 1729 1764 .. 0.92 10 ! 8.3 8.4 0.00014 2.4 2 32 .. 1761 1790 .. 1760 1799 .. 0.93 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.073 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324660_1 361 GLCLPHGGLCRPSCS 375 77789999****775 PP == domain 2 score: 25.1 bits; conditional E-value: 8.6e-10 DUF4705 27 aqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T324660_1 394 AQLPPAFVDPEVSAAKLFRPTSCL 417 8**********************9 PP == domain 3 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + +Lq +++ +++g srps+ +++As+G+++ T324660_1 424 PALAAEERLQ-APLWPPRGISRPSSPPTAASRGQVP 458 9*********.***********************98 PP == domain 4 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324660_1 1307 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1354 899********.*************************988877776666 PP == domain 5 score: -3.5 bits; conditional E-value: 0.73 DUF4705 32 AsaGpklppagLsrP 46 A ++p +++gL+rP T324660_1 1495 AGRPPWGRELGLERP 1509 6677888999****9 PP == domain 6 score: -3.1 bits; conditional E-value: 0.55 DUF4705 13 a.......paslqasglsrpsaqLpvAsaGpk 37 a + sl+ +++ + a L A + pk T324660_1 1530 Aterq*agAKSLARESSGPTKAVLSWAGVEPK 1561 55555556789999999999999998888776 PP == domain 7 score: 0.8 bits; conditional E-value: 0.032 DUF4705 6 asrrpLqa......paslqasglsrpsaqL 29 a+rr+Lq+ + + g+s+++ + T324660_1 1571 AGRRRLQDdlglqrS----PGGPSWARRSP 1596 89*****96533330....44555554444 PP == domain 8 score: 10.9 bits; conditional E-value: 2.2e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324660_1 1691 PPSWRPLQAqlfllaaslgpaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 1753 779*****************************9643399**********************99 PP == domain 9 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 + Lq + l++ gl +ps++ AsaGp T324660_1 1735 SQALQ-AHILPPGGLYSPSSGSRRASAGPA 1763 678**.**********************95 PP == domain 10 score: 8.3 bits; conditional E-value: 0.00014 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324660_1 1761 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1790 9**********.***************9888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 9144.96 // Query: T324660_2 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.3 21.8 4.8e-05 23.4 5.9 11.7 14 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 0.95 1.5e+04 35 48 .. 211 224 .. 194 224 .. 0.82 2 ? -3.4 0.0 0.67 1.1e+04 40 48 .. 241 249 .. 240 250 .. 0.85 3 ! 13.0 4.6 5.1e-06 0.083 25 50 .] 361 386 .. 359 386 .. 0.88 4 ! 12.2 11.6 9.2e-06 0.15 2 41 .. 412 450 .. 411 461 .. 0.93 5 ? -2.0 0.3 0.24 4e+03 14 30 .. 455 471 .. 449 473 .. 0.79 6 ? -2.2 0.0 0.27 4.5e+03 7 28 .. 949 976 .. 946 977 .. 0.85 7 ? 1.1 2.8 0.026 4.3e+02 28 48 .. 1300 1320 .. 1283 1322 .. 0.53 8 ! 5.3 3.1 0.0013 21 8 36 .. 1302 1329 .. 1296 1330 .. 0.92 9 ! 8.3 8.4 0.00015 2.4 2 32 .. 1328 1357 .. 1327 1366 .. 0.93 10 ? -3.1 0.2 0.53 8.7e+03 32 46 .. 1512 1530 .. 1501 1531 .. 0.65 11 ? -0.2 0.9 0.065 1.1e+03 35 49 .. 1688 1702 .. 1685 1703 .. 0.83 12 ! 23.4 5.9 2.9e-09 4.8e-05 8 50 .] 1704 1744 .. 1702 1744 .. 0.84 13 ! 17.9 7.9 1.5e-07 0.0024 3 38 .. 1751 1785 .. 1749 1794 .. 0.88 14 ? 0.1 1.6 0.054 8.7e+02 2 22 .. 1794 1816 .. 1793 1825 .. 0.75 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.95 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T324660_2 211 GPGRPTCSSSRPTS 224 78888888888887 PP == domain 2 score: -3.4 bits; conditional E-value: 0.67 DUF4705 40 pagLsrPss 48 ++gL+rP+s T324660_2 241 ELGLERPTS 249 679****99 PP == domain 3 score: 13.0 bits; conditional E-value: 5.1e-06 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+sCL T324660_2 361 ASASRMAASAGPAVPPGCISRPTSCL 386 5666679******************9 PP == domain 4 score: 12.2 bits; conditional E-value: 9.2e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 gp Pasr+p q +++ q+ + +p+ +Lp A +Gp lpp+ T324660_2 412 GPHPASRWPVQ-SQLWQQKSVCKPRCGLPGAYPGPALPPL 450 899********.*************************875 PP == domain 5 score: -2.0 bits; conditional E-value: 0.24 DUF4705 14 paslqasglsrpsaqLp 30 + sl+a g+ r+ + Lp T324660_2 455 AKSLPAPGSLRAALLLP 471 67999999999999998 PP == domain 6 score: -2.2 bits; conditional E-value: 0.27 DUF4705 7 srrpLqa......paslqasglsrpsaq 28 srrpL a l a++ls ++a+ T324660_2 949 SRRPLSAwegpv*GKGLMATSLSVGGAC 976 7999999999999889999999988887 PP == domain 7 score: 1.1 bits; conditional E-value: 0.026 DUF4705 28 qLpvAsaGpklppagLsrPss 48 + A + lpp+gL +Pss T324660_2 1300 FCSQALQAHILPPGGLYSPSS 1320 333333333347777777766 PP == domain 8 score: 5.3 bits; conditional E-value: 0.0013 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGp 36 + Lq + l++ gl +ps++ AsaGp T324660_2 1302 SQALQ-AHILPPGGLYSPSSGSRRASAGP 1329 678**.**********************9 PP == domain 9 score: 8.3 bits; conditional E-value: 0.00015 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324660_2 1328 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1357 9**********.***************9888 PP == domain 10 score: -3.1 bits; conditional E-value: 0.53 DUF4705 32 AsaGpkl....ppagLsrP 46 A aGp p++gL rP T324660_2 1512 ARAGPAEavlpPELGLYRP 1530 4455544445577789888 PP == domain 11 score: -0.2 bits; conditional E-value: 0.065 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324660_2 1688 GLCLPHGGLCRPSCS 1702 777899******775 PP == domain 12 score: 23.4 bits; conditional E-value: 2.9e-09 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 + +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324660_2 1704 WLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 1744 55787.88888884.33479**********************9 PP == domain 13 score: 17.9 bits; conditional E-value: 1.5e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + + q +++l+++g srps++++ As+G+++ T324660_2 1751 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVP 1785 9999999999.***********************97 PP == domain 14 score: 0.1 bits; conditional E-value: 0.054 DUF4705 2 gpAPasrrpLqa..paslqasgl 22 gpAP sr+p a a l+ +g T324660_2 1794 GPAPPSRWPVEAgaHADLSRRGR 1816 9********98765455555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:00.76 # Mc/sec: 7095.61 // Query: T324660_3 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-14 52.8 97.6 1.6e-05 24.9 0.8 9.7 8 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 4.0 2e-05 0.32 6 27 .. 364 397 .. 360 400 .. 0.91 2 ? -1.0 10.3 0.12 2e+03 9 50 .] 408 459 .. 405 459 .. 0.60 3 ? 0.4 5.6 0.044 7.2e+02 3 32 .. 434 462 .. 432 470 .. 0.88 4 ! 24.9 0.8 9.8e-10 1.6e-05 27 50 .] 1288 1311 .. 1285 1311 .. 0.97 5 ! 17.9 7.9 1.5e-07 0.0024 3 38 .. 1318 1352 .. 1316 1361 .. 0.88 6 ? 0.1 1.6 0.054 8.7e+02 2 22 .. 1361 1383 .. 1360 1392 .. 0.75 7 ! 17.5 6.5 2e-07 0.0033 23 50 .] 1686 1713 .. 1685 1713 .. 0.95 8 ! 16.9 17.1 3e-07 0.0049 2 46 .. 1739 1786 .. 1738 1791 .. 0.91 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 6 asrrpLqa............paslqasglsrpsa 27 +rpLqa pas+qas++++++ T324660_3 364 PAWRPLQAqlfllaaslgphPASQQASSFGSAPT 397 569****************************996 PP == domain 2 score: -1.0 bits; conditional E-value: 0.12 DUF4705 9 rpLqa....pasl..qasglsrpsaqLpvAsaGpkl....ppagLsrPssCL 50 + Lqa p l ++sg+ r+sa + vAs+G p gL Ps CL T324660_3 408 QALQAhilpPGGLysPSSGSRRASASPAVASQGHIQaqlsPHCGLPGPSPCL 459 5577444432223225566667777777777776556677888888888887 PP == domain 3 score: 0.4 bits; conditional E-value: 0.044 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvA 32 pA as+ + q +++ ++ gl ps +L +A T324660_3 434 PAVASQGHIQ-AQLSPHCGLPGPSPCLLPA 462 9*********.9999999999999998877 PP == domain 4 score: 24.9 bits; conditional E-value: 9.8e-10 DUF4705 27 aqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T324660_3 1288 AQLPPAFVDPEVSAAKLFRPTSCL 1311 79*********************9 PP == domain 5 score: 17.9 bits; conditional E-value: 1.5e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + + q +++l+++g srps++++ As+G+++ T324660_3 1318 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVP 1352 9999999999.***********************97 PP == domain 6 score: 0.1 bits; conditional E-value: 0.054 DUF4705 2 gpAPasrrpLqa..paslqasgl 22 gpAP sr+p a a l+ +g T324660_3 1361 GPAPPSRWPVEAgaHADLSRRGR 1383 9********98765455555555 PP == domain 7 score: 17.5 bits; conditional E-value: 2e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +srPssCL T324660_3 1686 GPASASLMAASAGPAVPPGCISRPSSCL 1713 5799***********************9 PP == domain 8 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324660_3 1739 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1786 899********.*************************988877776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.72 # Mc/sec: 7489.81 // Query: T093973_1 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.086 13.1 8.7 0.18 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.1e-05 0.18 8 50 .. 622 664 .. 621 671 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.1e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T093973_1 622 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 664 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 334 (0.0204833); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 4724.46 // Query: T093973_2 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 6124.30 // Query: T093973_3 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5900.46 // Query: T367902_1 [L=2920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.69 # Mc/sec: 12106.70 // Query: T367902_2 [L=2920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-20 72.2 0.1 1.2e-19 70.1 0.1 2.2 1 CD225 Interferon-induced transmembrane protein Domain annotation for each model (and alignments): >> CD225 Interferon-induced transmembrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 0.1 7.1e-24 1.2e-19 2 66 .. 277 341 .. 276 343 .. 0.97 Alignments for each domain: == domain 1 score: 70.1 bits; conditional E-value: 7.1e-24 CD225 2 pkdylvwsifntlfcclplGivAivySvksrdrkavGdlegAqsasstAkilniialvlgillii 66 pkdy++ s+++tlfccl++G++AivyS+++r + +Gdl++A++as++A+ l ++l++g+++ + T367902_2 277 PKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLFGVFVST 341 99***********************************************************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 11765.67 // Query: T367902_3 [L=2920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 11602.25 // Query: T201373_1 [L=4044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.36s 00:00:01.86 Elapsed: 00:00:00.77 # Mc/sec: 15024.93 // Query: T201373_2 [L=4044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.37s 00:00:01.84 Elapsed: 00:00:00.78 # Mc/sec: 14832.30 // Query: T201373_3 [L=4044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 15634.05 // Query: T212596_1 [L=4004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.44s 00:00:02.09 Elapsed: 00:00:00.83 # Mc/sec: 13800.92 // Query: T212596_2 [L=4003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.43s 00:00:01.93 Elapsed: 00:00:00.81 # Mc/sec: 14138.15 // Query: T212596_3 [L=4003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.41s 00:00:02.13 Elapsed: 00:00:00.76 # Mc/sec: 15068.29 // Query: T098808_1 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 4320.69 // Query: T098808_2 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 4816.51 // Query: T098808_3 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4586.27 // Query: T043266_1 [L=5199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.44s 00:00:02.89 Elapsed: 00:00:00.94 # Mc/sec: 15822.82 // Query: T043266_2 [L=5199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.95 # Mc/sec: 15656.27 // Query: T043266_3 [L=5199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.35s 00:00:02.27 Elapsed: 00:00:00.77 # Mc/sec: 19316.18 // Query: T350747_1 [L=3480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:00.84 # Mc/sec: 11852.01 // Query: T350747_2 [L=3479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.75 # Mc/sec: 13270.44 // Query: T350747_3 [L=3479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.41s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 13823.37 // Query: T227540_1 [L=5818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.34s 00:00:02.10 Elapsed: 00:00:00.81 # Mc/sec: 20548.53 // Query: T227540_2 [L=5818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.31s 00:00:01.76 Elapsed: 00:00:00.63 # Mc/sec: 26419.54 // Query: T227540_3 [L=5817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.30s 00:00:01.59 Elapsed: 00:00:00.55 # Mc/sec: 30257.18 // Query: T358003_1 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1417 (0.0869005); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 10629.46 // Query: T358003_2 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1224 (0.0750644); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 11204.05 // Query: T358003_3 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1131 (0.069361); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 11003.98 // Query: T114404_1 [L=2234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1117 (0.0685024); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 11412.67 // Query: T114404_2 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-21 75.7 1.4 3.3e-21 75.7 1.4 1.9 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.1 0.081 1.3e+03 93 128 .. 1163 1198 .. 1153 1203 .. 0.57 2 ! 75.7 1.4 2e-25 3.3e-21 1 176 [. 1615 1808 .. 1615 1809 .. 0.88 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.081 G-EEET.........................TEEEE CS RVT_1 93 tafkvptklinliksflstrsfsvrvngeesegrye 128 t f+ + ++ i+ +ls++++s++ ++++s++ y+ T114404_2 1163 TFFSSIHAIYSNINHMLSQKQVSINSKKSKSYQVYS 1198 444444455666666666666666666665555555 PP == domain 2 score: 75.7 bits; conditional E-value: 2e-25 EE-TT......S-EEE......-THHHHCTB...--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkli...akrLkdvlekllsenqpgfrpgr....stldaveellkalkkkkkaklllklDlkkaFdsvple 86 ipK g + ++Rpisl+++d k+l k++ ++ ++l++l ++nq+gf pg +++++++++ ++++ k+k+++++++D k F++++++ T114404_2 1615 IPKSGrdtmkKVNFRPISLINIDSKILHKILgn*IQ---QHLKNLTHHNQVGFIPGMqd*fNICKSINVIYHINRIKNKNHMIISIDTKRDFNKIQHS 1709 7888888888889*****************755544...688888***********5333357777799999999999******************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHH..HTT-T.............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnel..lrelrkra.......kgvtllrYaDDililsk 175 ++++ l++++++ + ++++++++ ++++++ +ng++ e ++ ++++qG++l Pll n+++ l + +k++ + ++ll++aD +++++ T114404_2 1710 FIIKALNRLGIKGTYLKIVRAIYDKPTANIILNGQKLELFPWRTRTRQGCPLLPLLVNIVLKVLt*VIRQEKEIeaiqirkEAIKLLLFADNMILYIA 1807 ***********************************99*************************985535555556678899999***********9987 PP S CS RVT_1 176 s 176 + T114404_2 1808 N 1808 6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11614.97 // Query: T114404_3 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-28 97.6 1.2 9.9e-28 96.9 1.2 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.9 1.2 6.1e-32 9.9e-28 194 296 .. 699 800 .. 699 807 .. 0.94 Alignments for each domain: == domain 1 score: 96.9 bits; conditional E-value: 6.1e-32 EES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHH.HHHS-EEETTEEEEEEE-- CS Transposase_22 194 liGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkav.rekGrvtlkGkPirltadl 287 liG+++ e e+ + eni+ +i++en P l++ ++++iqei+rtP r+ k++ss hii+r+tkv k+kilk r kG+vt+kG Pirl + l T114404_3 699 LIGIPDRE-ERISNSENIFGDIVHENVPSLARAVDIQIQEIQRTPIRYYTKQSSSMHIIIRLTKVSAKEKILKRS*R-KGQVTYKGNPIRLVTTL 791 799*9987.578899*********************************************************96666.9**************** PP -HHHHHHHH CS Transposase_22 288 saetlkarr 296 s + ++ +r T114404_3 792 SRNLMNQKR 800 **9999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.57 # Mc/sec: 11014.20 // Query: T352678_1 [L=5286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.32s 00:00:01.62 Elapsed: 00:00:00.60 # Mc/sec: 25203.91 // Query: T352678_2 [L=5285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.61 # Mc/sec: 24786.04 // Query: T352678_3 [L=5285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.59 # Mc/sec: 25626.25 // Query: T045404_1 [L=1574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 8659.51 // Query: T045404_2 [L=1574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 6621.98 // Query: T045404_3 [L=1573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-27 94.3 0.1 6.6e-27 93.1 0.1 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.1 0.1 4.1e-31 6.6e-27 15 72 .. 415 472 .. 410 473 .. 0.98 Alignments for each domain: == domain 1 score: 93.1 bits; conditional E-value: 4.1e-31 Transposase_1 15 getpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqe 72 +e+pk++p ++lhqkkvm+tVwWsa+gli+y+fl+pgeti se+Yaqq+d++++klq+ T045404_3 415 EEAPKHFPGSNLHQKKVMVTVWWSAAGLIHYSFLNPGETIVSEKYAQQIDEMHRKLQC 472 699*****************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1573 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.74 # Mc/sec: 6081.20 // Query: T060453_1 [L=2915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-08 32.2 0.4 0.43 10.5 0.1 4.5 4 zf-BED BED zinc finger ------ inclusion threshold ------ 0.049 13.9 0.2 62 4.0 0.1 3.7 4 DUF3505 Protein of unknown function (DUF3505) 0.12 12.3 1.7 38 4.4 0.0 3.8 4 DUF678 Protein of unknown function (DUF678) 6.2 7.7 11.4 13 6.7 0.0 3.2 3 Spt5_N Spt5 transcription elongation factor, acidic N-term Domain annotation for each model (and alignments): >> zf-BED BED zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.1 0.00011 0.43 14 44 .] 1181 1210 .. 1171 1210 .. 0.89 2 ? 0.4 0.0 0.15 6.1e+02 14 43 .. 1340 1368 .. 1335 1369 .. 0.72 3 ! 8.8 0.0 0.00037 1.5 8 44 .] 1488 1523 .. 1482 1523 .. 0.87 4 ! 6.3 0.0 0.0023 9.2 13 44 .] 1656 1686 .. 1648 1686 .. 0.87 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00011 SS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++ vC+ Cg l+ + +krH+r kHp T060453_1 1181 RHGMVCMVCGSSLAT-LKLSTIKRHIRQKHP 1210 67889**********.5*************8 PP == domain 2 score: 0.4 bits; conditional E-value: 0.15 SS--EETTTTEE----SSTHHHHHHHHHS- CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkH 43 +++vC+ Cg+ l + +++H H T060453_1 1340 GNRLVCMACGRALPSL-HLDDIRAHVLEVH 1368 5899******998773.6666666665555 PP == domain 3 score: 8.8 bits; conditional E-value: 0.00037 ----GGSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 8 tiveakkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++++++ +vC Cg l++ + + rH+rr+Hp T060453_1 1488 MELDGGRRGLVCGVCGGALAS-LKMSTIERHIRRRHP 1523 5566888999***********.5*************8 PP == domain 4 score: 6.3 bits; conditional E-value: 0.0023 GSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 13 kkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 + +vC+ Cg l+ ++ +krH+ Hp T060453_1 1656 SRRGLVCMVCGGALAT-LKVSTIKRHILQVHP 1686 56678***********.5**********9998 PP >> DUF3505 Protein of unknown function (DUF3505) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.1 0.015 62 9 35 .. 1181 1210 .. 1174 1226 .. 0.74 2 ? -2.1 0.0 1.1 4.6e+03 4 30 .. 1335 1364 .. 1333 1371 .. 0.70 3 ? 3.1 0.0 0.029 1.2e+02 12 39 .. 1497 1527 .. 1488 1563 .. 0.74 4 ? 1.4 0.0 0.091 3.7e+02 4 53 .. 1652 1703 .. 1649 1710 .. 0.68 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.015 DUF3505 9 yrvliCreCkyavlp...selerHLrkrhr 35 + ++C C ++++ s+++rH+r++h T060453_1 1181 RHGMVCMVCGSSLATlklSTIKRHIRQKHP 1210 445788888877766666888999998885 PP == domain 2 score: -2.1 bits; conditional E-value: 1.1 DUF3505 4 eyneeyrvliCreCkyavlp...selerHL 30 y+++ + l+C +C a+ +++ H T060453_1 1335 DYDPRGNRLVCMACGRALPSlhlDDIRAHV 1364 577777889*****9998774445555565 PP == domain 3 score: 3.1 bits; conditional E-value: 0.029 DUF3505 12 liCreCkyavlp...selerHLrkrhrqlkr 39 l+C C a++ s++erH+r+rh r T060453_1 1497 LVCGVCGGALASlkmSTIERHIRRRHPGSTR 1527 79999999998777799******99976544 PP == domain 4 score: 1.4 bits; conditional E-value: 0.091 DUF3505 4 eyneeyrvliCreCkyavlp...selerHLrkrhrqlkrektqelletvehem 53 y+ + r l+C C a++ s+++rH+ + h + + t e ++t+ +++ T060453_1 1652 DYDGSRRGLVCMVCGGALATlkvSTIKRHILQVHP-FSMDFTPEERQTILEAY 1703 57777788999999999887777999999875443.33455566666665554 PP >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.019 78 55 72 .. 1180 1197 .. 1168 1199 .. 0.79 2 ? 4.4 0.0 0.0093 38 54 71 .. 1338 1355 .. 1327 1359 .. 0.85 3 ? -0.9 0.0 0.4 1.6e+03 54 72 .. 1492 1510 .. 1481 1512 .. 0.77 4 ? -0.6 0.0 0.33 1.4e+03 57 72 .. 1658 1673 .. 1648 1674 .. 0.83 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.019 DUF678 55 kgntlrCaACgSsLtlLr 72 + + + C CgSsL +L+ T060453_1 1180 ARHGMVCMVCGSSLATLK 1197 566789*********997 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0093 DUF678 54 gkgntlrCaACgSsLtlL 71 ++gn l C ACg +L +L T060453_1 1338 PRGNRLVCMACGRALPSL 1355 679***********9887 PP == domain 3 score: -0.9 bits; conditional E-value: 0.4 DUF678 54 gkgntlrCaACgSsLtlLr 72 g l C Cg +L +L+ T060453_1 1492 GGRRGLVCGVCGGALASLK 1510 5567799********9996 PP == domain 4 score: -0.6 bits; conditional E-value: 0.33 DUF678 57 ntlrCaACgSsLtlLr 72 l C Cg +L +L+ T060453_1 1658 RGLVCMVCGGALATLK 1673 6799********9996 PP >> Spt5_N Spt5 transcription elongation factor, acidic N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.0033 13 6 21 .. 1247 1262 .. 1244 1323 .. 0.74 2 ? -0.9 0.6 0.76 3.1e+03 15 53 .. 1448 1479 .. 1433 1491 .. 0.54 3 ? 5.8 2.0 0.0062 25 8 42 .. 1575 1609 .. 1569 1641 .. 0.71 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0033 Spt5_N 6 AeVdddeeeeeeeeev 21 Ae +++eeeeeeee + T060453_1 1247 AEEEEEEEEEEEEEGA 1262 4444444433333333 PP == domain 2 score: -0.9 bits; conditional E-value: 0.76 Spt5_N 15 eeeeeeveggeddfiveeeadeeeedserddrshreldr 53 eeeee+e+ge + +a + ++ + r+hr+ + T060453_1 1448 AEEEEELEEGEGE-----RAGVPGRS--PRGRAHRRHPQ 1479 4666666666666.....22223333..22333333333 PP == domain 3 score: 5.8 bits; conditional E-value: 0.0062 Spt5_N 8 Vdddeeeeeeeeeveggedd....fiveeeadeeeedse 42 d++ee eeeeee+++ + + e++ eee++e T060453_1 1575 GDEEEEPEEEEEEWGDVPLSpgapL----ERPAEEEEDE 1609 4677677999999999888744431....3333333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:00.82 # Mc/sec: 10169.90 // Query: T060453_2 [L=2914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.69 # Mc/sec: 12081.82 // Query: T060453_3 [L=2914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 11265.48 // Query: T062849_1 [L=5042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.44s 00:00:02.33 Elapsed: 00:00:00.80 # Mc/sec: 18030.38 // Query: T062849_2 [L=5042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.43s 00:00:02.35 Elapsed: 00:00:00.82 # Mc/sec: 17590.62 // Query: T062849_3 [L=5041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.43s 00:00:02.45 Elapsed: 00:00:00.79 # Mc/sec: 18254.99 // Query: T276720_1 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.69 # Mc/sec: 7923.26 // Query: T276720_2 [L=1910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 9757.47 // Query: T276720_3 [L=1910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.61 # Mc/sec: 8957.68 // Query: T322332_1 [L=3769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.84 # Mc/sec: 12836.27 // Query: T322332_2 [L=3769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.76 # Mc/sec: 14187.46 // Query: T322332_3 [L=3769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:00.73 # Mc/sec: 14770.50 // Query: T156478_1 [L=2622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.63 # Mc/sec: 11906.50 // Query: T156478_2 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 10560.89 // Query: T156478_3 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 11191.40 // Query: T221658_1 [L=3869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.41s 00:00:01.95 Elapsed: 00:00:00.87 # Mc/sec: 12722.47 // Query: T221658_2 [L=3868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 582 (0.0356924); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.43s 00:00:02.08 Elapsed: 00:00:00.90 # Mc/sec: 12295.21 // Query: T221658_3 [L=3868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.38s 00:00:02.19 Elapsed: 00:00:00.84 # Mc/sec: 13173.44 // Query: T090159_1 [L=4031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 15797.27 // Query: T090159_2 [L=4030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.46s 00:00:01.90 Elapsed: 00:00:00.86 # Mc/sec: 13405.98 // Query: T090159_3 [L=4030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.40s 00:00:01.97 Elapsed: 00:00:00.75 # Mc/sec: 15372.19 // Query: T214237_1 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1297 (0.0795413); expected 326.1 (0.02) Passed bias filter: 508 (0.0311542); expected 326.1 (0.02) Passed Vit filter: 116 (0.00711395); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.49u 0.45s 00:00:02.94 Elapsed: 00:00:00.80 # Mc/sec: 14060.98 // Query: T214237_2 [L=3931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.9 6.1 18.6 12 5.3 18.6 1.2 1 SR-25 Nuclear RNA-splicing-associated protein Domain annotation for each model (and alignments): >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 18.6 0.00072 12 75 120 .. 2356 2401 .. 2343 2407 .. 0.67 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.00072 SR-25 75 ssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkkakeka 120 sss ++ + + ++kk++k+k+kk+k+k++kkk kk k + k+++ T214237_2 2356 LSSSLGGCKRVCLKKKKKKKTKEKKRKRKERKKKGKKGKERRKKRK 2401 4555556666666677777778887777777777777776666533 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 860 (0.0527413); expected 326.1 (0.02) Passed bias filter: 415 (0.0254508); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.18u 0.43s 00:00:02.61 Elapsed: 00:00:00.75 # Mc/sec: 14994.56 // Query: T214237_3 [L=3931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1133 (0.0694836); expected 326.1 (0.02) Passed bias filter: 531 (0.0325647); expected 326.1 (0.02) Passed Vit filter: 131 (0.00803385); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.58u 0.51s 00:00:03.09 Elapsed: 00:00:00.88 # Mc/sec: 12779.46 // Query: T351118_1 [L=1793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.74 # Mc/sec: 6931.71 // Query: T351118_2 [L=1792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 13.9 0.1 0.074 12.8 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.1 4.5e-06 0.074 15 43 .. 875 907 .. 871 914 .. 0.80 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 4.5e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351118_2 875 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 907 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 7767.59 // Query: T351118_3 [L=1792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-21 73.9 7.5 1.4e-20 72.8 4.6 2.4 2 Transposase_1 Transposase (partial DDE domain) 0.0027 17.4 0.4 0.0048 16.5 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.057 13.5 0.0 0.12 12.5 0.0 1.5 1 BEN BEN domain 1.5 9.2 4.1 2.9 8.3 4.1 1.4 1 RCDG1 Renal cancer differentiation gene 1 protein Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.071 2.9e+02 25 38 .. 685 698 .. 681 700 .. 0.80 2 ! 72.8 4.6 3.5e-24 1.4e-20 14 79 .. 870 939 .. 849 940 .. 0.86 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.071 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351118_3 685 EKLSKNAMLTIVWS 698 45569********8 PP == domain 2 score: 72.8 bits; conditional E-value: 3.5e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351118_3 870 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 939 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.4 1.2e-06 0.0048 55 143 .. 910 1003 .. 842 1005 .. 0.76 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 1.2e-06 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351118_3 910 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1003 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 3e-05 0.12 5 23 .. 1717 1735 .. 1714 1741 .. 0.86 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 3e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351118_3 1717 NLVCQVFPREYLANHNCGR 1735 8****************85 PP >> RCDG1 Renal cancer differentiation gene 1 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 4.1 0.0007 2.9 8 32 .. 182 206 .. 177 225 .. 0.80 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0007 RCDG1 8 PPpPPPssPssraaasssspelPvs 32 P PP ss s +a+ +ssp++Pvs T351118_3 182 WPVPPCSSQSHPDASLASSPSVPVS 206 589999******************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 7651.65 // Query: T125931_1 [L=1205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 5651.31 // Query: T125931_2 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 5646.62 // Query: T125931_3 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.75 # Mc/sec: 4592.59 // Query: T336892_1 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 3892.60 // Query: T336892_2 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 3764.49 // Query: T336892_3 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 4019.71 // Query: T355647_1 [L=1035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 17.5 0.4 0.0055 16.6 0.4 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.4 3.4e-07 0.0055 8 67 .. 110 172 .. 106 179 .. 0.89 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 3.4e-07 HERV-K_REC 8 kmnkmvtseeq...mklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivs 67 m km ++q m+lp ++ w lk+ tq a + l t+ tp+ ++la l ++ T355647_1 110 EMKKMTLQDQQpwtMRLPRMTQSTDVIWGMLKRTTQEAEQILLRTQTPFTPDNLFLAILSVLH 172 58888888877777*******************************************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6042.77 // Query: T355647_2 [L=1035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-16 61.0 4.0 2.1e-16 60.2 4.0 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.2 4.0 1.3e-20 2.1e-16 4 119 .. 551 666 .. 548 684 .. 0.85 Alignments for each domain: == domain 1 score: 60.2 bits; conditional E-value: 1.3e-20 XXXXXXXXXXXHHHHHHHHHHH.HHHHHHHHHHHHHHHH...HSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHH CS GP41 4 vslaqevqaatlvnelsknvlk.aletQeeidkklearv...naleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWn 98 +s++++vq+ t+v++l +nv + l Q+ id+k+ ar+ +a ++ +G+ +l +q++l+C ++k iCvT++p+n+s sW+ vk+hl g ++ T355647_2 551 ASITKSVQTSTFVDNLARNVSN*LL-LQQGIDQKIIARL*alEATLKY---VGERQDALAFQQQLNCEWEHKHICVTSLPWNQSIySWNEVKQHLWGTFH 646 79******************87766.4889********5533666666...9********************************99***********975 PP XHHHHHHHHHHHHHHHHHHHH CS GP41 99 ntevsldlsklhneiediqnq 119 ++ d+++l+ i ++ n+ T355647_2 647 -DNLTADVKQLKTTIIESLNA 666 .56777888887777766554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 487 (0.0298663); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 5694.15 // Query: T355647_3 [L=1035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 4699.94 // Query: T028410_1 [L=4147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.41s 00:00:01.96 Elapsed: 00:00:00.88 # Mc/sec: 13481.66 // Query: T028410_2 [L=4147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:00.67 # Mc/sec: 17707.26 // Query: T028410_3 [L=4146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.70 # Mc/sec: 16944.29 // Query: T069164_1 [L=3558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-23 80.7 0.1 1.4e-22 80.2 0.1 1.2 1 Gag_p30 Gag P30 core shell protein 3.7e-11 42.8 0.1 6.3e-11 42.1 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 1.5e-05 24.7 2.4 1.5e-05 24.7 2.4 2.4 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.032 13.8 2.7 0.084 12.5 2.7 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 0.1 3.4e-26 1.4e-22 3 210 .. 618 825 .. 616 826 .. 0.90 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 3.4e-26 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeafpltrpdwdyetae.g 101 pfs sdl + ++ sfs dp+k + + + l+ + tw d + l l+ ++r+rv+ a+ + + + +l++ p + p+w+ ++ + g T069164_1 618 VPFSLSDLSQIIQHLVSFSSDPTKYIQEFQYLTLSCDLTWSDLNVNLTSTLSPDDRERVFSLAQSHADNHRLHEPDLQE-GSRVVPQEDPQWNSQANSpG 716 69**********************************************************9999999888888888875.57889*******98765414 PP Gag_p30 102 resl.klyrqlllaglrgaarrptn.lakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlv 199 l+ gl+ a + n k+ke +qgkee+ a f+ rl r+yt dpe pe + + + +i+qs++dirkklq+le ++ ++l+ T069164_1 717 IA-R*DYVISCLVEGLKKAVYKAVN*D-KLKETTQGKEENSAQFMARLAANLRHYTALDPEGPEGRLILNMHLITQSTPDIRKKLQKLESGPQTPQQELI 814 43.2224457899*****999876554.899********************************************************************* PP Gag_p30 200 keaekvynkre 210 + a kvyn re T069164_1 815 NLAFKVYNNRE 825 ********998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.1 0.1 1.5e-14 6.3e-11 65 187 .. 1195 1297 .. 1150 1311 .. 0.78 Alignments for each domain: == domain 1 score: 42.1 bits; conditional E-value: 1.5e-14 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......T CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvt 162 + ++++ lDlk+aF ++pl+ +++l+af+ ++ + +++ ++++lpqG+ SP f+ ++++ l +++ + T069164_1 1195 PSSTTHYSVLDLKDAFLTIPLHPPSQPLFAFTWTDP-------------------DTHQSQQLTWTVLPQGFRDSPHYFSQALSHDLLSFHPS--TSH 1271 34559****************************988...................334599********************999888888875..79* PP EEECTTEEEEEESS.HHHHHHHHHHH CS RVT_1 163 llrYaDDililsks.keelqelleav 187 l++Y+DD+l+ s s +++ q l + T069164_1 1272 LIQYIDDLLFCSPSfESSQQDTLLLL 1297 *************9555543333333 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 2.4 3.7e-09 1.5e-05 2 18 .] 880 896 .. 879 896 .. 0.94 2 ? -3.1 0.3 2.4 9.6e+03 14 18 .] 1407 1411 .. 1407 1411 .. 0.91 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.7e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 C++C++ GH+a++Cp+ T069164_1 880 SCFKCQKSGHWAKECPQ 896 6***************7 PP == domain 2 score: -3.1 bits; conditional E-value: 2.4 TTSTS CS zf-CCHC 14 rdCpk 18 rdCp+ T069164_1 1407 RDCPH 1411 8***8 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 2.7 2.1e-05 0.084 1 18 [. 877 894 .. 877 895 .. 0.96 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.1e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T069164_1 877 PSGSCFKCQKSGHWAKEC 894 7999************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.73 # Mc/sec: 13943.61 // Query: T069164_2 [L=3558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-21 74.8 0.0 9.9e-21 74.0 0.0 1.4 1 rve Integrase core domain 1.8e-20 73.4 0.0 2.7e-20 72.9 0.0 1.2 1 RNase_H RNase H 5.6e-16 58.2 3.3 1e-15 57.4 3.3 1.4 1 TLV_coat ENV polyprotein (coat polyprotein) 0.00085 19.4 0.0 0.0017 18.5 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.21 11.2 0.0 0.43 10.1 0.0 1.4 1 RVT_3 Reverse transcriptase-like Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.0 0.0 3e-24 9.9e-21 6 118 .. 1839 1947 .. 1837 1948 .. 0.89 Alignments for each domain: == domain 1 score: 74.0 bits; conditional E-value: 3e-24 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 + wq+D+t+++ + ++ +yllv++d+f++++ a+++ +e +a +vi l + ++g p + sDn +++ts+ ++++ + lgi++ ++ ++pq T069164_2 1839 QDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGSE-KATAVISSLLSDIILQFGL-PTSIQSDNRPAFTSQITQAVSQALGIQWNLHISYHPQ 1932 56*********..55556**********************.6666666666666666666.************************************* PP rve 104 dnGkvErfnrtlkde 118 + GkvE++n++lk++ T069164_2 1933 SSGKVEQTNGLLKTH 1947 ************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.9 0.0 8.3e-24 2.7e-20 3 142 .. 1572 1716 .. 1570 1717 .. 0.85 Alignments for each domain: == domain 1 score: 72.9 bits; conditional E-value: 8.3e-24 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 +++++ DGs+ + +++++ag+ ++++ + +++l++ +t +aEL A+++aL a ++ ++niytDSkY+++ +++ v +w ++++ tt+ + T069164_2 1572 DHTWFIDGSSTRPncHSPAKAGYaIVSST-SVIDATALPPSTTSEQAELVALTQALTlA--KGLCINIYTDSKYAFHILHHRVVTWAERGYLTTQGS- 1665 579******9876688888****555544.5567788999****************977..99**************9999**********777666. PP BHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 97 pvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++n++l+++l ++a +k+ + +kgH+ + gN aD++A++aa T069164_2 1666 SIINASLIKTLLKAALlPKEAGVIDCKGHQKAsepiALGNAYADKVARQAA 1716 6***8888877666655************665578877***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.4 3.3 3.1e-19 1e-15 468 560 .. 2681 2769 .. 2681 2770 .. 0.76 Alignments for each domain: == domain 1 score: 57.4 bits; conditional E-value: 3.1e-19 HTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHH..HHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXX CS TLV_coat 468 LfleeGGlCaALkEeCCFyadksgivrdsiakLqerleq..rqrllednqlwfegllglspwlttllstilgpLlllLLiLllG.PcilnrLvqli 560 L++e+GGlC L+EeCCFy + sg+v d+i+kL++r ++ q + ++ w l + w++++l +pL+l+ L Lll Pci+ + q+i T069164_2 2681 LTAEKGGLCIFLNEECCFYLNLSGLVYDNIKKLKDRAQKlaNQASNYAEPPW--ALSNWMSWVLPIL----SPLILIFL-LLLF*PCIFCLVSQFI 2769 89*********************************98762233334445555..7888888888888....99976655.5556666666666665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 5.2e-07 0.0017 66 100 .. 1021 1055 .. 1006 1056 .. 0.82 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 5.2e-07 ETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 66 lieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ +++ s+l++p++p++llGrd+L+kl + L T069164_2 1021 CQFGQHSFMHSFLVIPTCPLPLLGRDILTKLPASL 1055 4555555556********************98887 PP >> RVT_3 Reverse transcriptase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.0 0.00013 0.43 14 70 .. 1591 1641 .. 1580 1668 .. 0.78 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00013 RVT_3 14 gagvvirdpngevllagaeklenlataeeaEalAlleGLqlAlklgirrlivegDsq 70 +ag++i + + v+ a a l + +t+e+aE+ Al ++L+lA+ l i + +Ds+ T069164_2 1591 KAGYAIVS-STSVIDATA--LPPSTTSEQAELVALTQALTLAKGLCI---NIYTDSK 1641 56666664.555777777..6699******************99854...4555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.88 # Mc/sec: 11566.86 // Query: T069164_3 [L=3558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-21 74.0 8.9 7.1e-16 57.9 2.9 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) 0.0011 18.5 0.1 0.0025 17.4 0.1 1.5 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.4 3.8e-08 0.00031 243 278 .. 2265 2300 .. 2255 2303 .. 0.90 2 ! 57.9 2.9 8.7e-20 7.1e-16 260 462 .. 2475 2676 .. 2457 2686 .. 0.74 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 3.8e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavn 278 +++++++L a+npsl+ +CwlC+ +++ y a++ + T069164_3 2265 INLTHSLLAASNPSLVSNCWLCISLSSSAYTAVPAL 2300 6889*****************************976 PP == domain 2 score: 57.9 bits; conditional E-value: 8.7e-20 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX...XX CS TLV_coat 260 dCwlClesgppyyeaiavngsv.snktsapacslspqlkltlsevtgqgllig.kvPkthqalcnktektskgse.ylvapngtvfacntgltpclst 354 +C+l s+ ++ v + + +++++++++s++++++ l t l + + + q +++t ++ + + + ++g +f+c+ ++ T069164_3 2475 SCLLIPSSENNNERLLVVTQRFlIHHENQTSPSVQLPHQSPLQPLTAAALAATpG--VWVQDTPFSTPSHLFTLHlQFCLTQGLFFLCGSST----YM 2566 5555555554444444443333033444333666666666555555555533332..223333333343333333388999*******9865....69 PP XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXX...XXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 355 allnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGL...giaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskl 447 l+++ t+ C l+ l P+i++++ ++ + t++kR + l++lL+ L + ++++gtG++g+ s+++f +L++ + ++++ s l T069164_3 2567 CLPANQTGTCTLVFLTPKIQFANRTkELPVPLMTLTQQKR---VIPLVPLLVSLglsASTTALGTGIAGIsTSVTTFCSLSNDFSPSITDISQTSSVL 2661 9*********************9988888889999*****...89999999988446667899*********************************** PP HHHHHHHHHHHHHHH CS TLV_coat 448 eksltslaevvlQNR 462 + +++sl vvlQNR T069164_3 2662 QAQVDSLTAVVLQNR 2676 **************8 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.1 3.1e-07 0.0025 34 88 .. 446 501 .. 442 534 .. 0.82 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 3.1e-07 HHHHHHTTGGGGSS....S--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHH CS Gag_MA 34 litlCsseWptlnv....gWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsL 88 li +C++ Wp ++ +WP++Gtfd+++++ + + k G vpYi + +L T069164_3 446 LIFFCNTTWPQYKLdngsKWPENGTFDFSILQDLSNFCQ---KMGKWSEVPYIQASFTL 501 578*******996522337************99988555...5688899****876555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.62 # Mc/sec: 16417.47 // Query: T111287_1 [L=4588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.44s 00:00:01.98 Elapsed: 00:00:00.79 # Mc/sec: 16614.54 // Query: T111287_2 [L=4587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.41s 00:00:02.15 Elapsed: 00:00:00.87 # Mc/sec: 15083.48 // Query: T111287_3 [L=4587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.42s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 16003.20 // Query: T035080_1 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2825.70 // Query: T035080_2 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 2684.41 // Query: T035080_3 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.8 4.2 0.27 11.8 4.2 1.5 1 PLA2_inh Phospholipase A2 inhibitor 0.26 11.9 5.1 0.48 11.0 5.1 1.4 1 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> PLA2_inh Phospholipase A2 inhibitor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 4.2 3.4e-05 0.27 2 55 .. 221 275 .. 220 278 .. 0.89 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 3.4e-05 PLA2_inh 2 sCeiCvnl.GkdCegykeeCdsneDaCvtvllevssaplslrlihknCfssdlCk 55 +C C ++ G++C+++ + C++++ +C ++ + + + k C +dlCk T035080_3 221 KCPTCFAVqGRKCDTELKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLCK 275 699998655*********************98777777789999**********8 PP >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 5.1 5.9e-05 0.48 1 52 [. 222 274 .. 222 294 .. 0.94 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.9e-05 EEEEEEBTTTBCCCC.EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGG CS UPAR_LY6 1 CysClgessesClpe.veCpeadsvCvsatlklqagnlettlvvkgCaressc 52 C++C ++ +C +e + C+ ++ C++ + + g ++ + +k C+++ c T035080_3 222 CPTCFAVQGRKCDTElKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLC 274 ***************99********************************9999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 3426.91 // Query: T261485_1 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 6369.11 // Query: T261485_2 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46 # Mc/sec: 7885.94 // Query: T261485_3 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 6148.36 // Query: T001139_1 [L=1488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.77 10.0 2.8 1.8 8.8 2.8 1.6 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 2.8 0.00011 1.8 16 51 .. 1291 1326 .. 1291 1334 .. 0.70 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00011 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkas 51 +Y+++Y++I++++ + f + +r Lk s T001139_1 1291 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCS 1326 79*********9988888777666655555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.74 # Mc/sec: 5752.59 // Query: T001139_2 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 7334.58 // Query: T001139_3 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7334.58 // Query: T212555_1 [L=2152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 10092.63 // Query: T212555_2 [L=2152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.62 # Mc/sec: 9929.85 // Query: T212555_3 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 9767.69 // Query: T007023_1 [L=4623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-11 42.9 0.0 6.9e-11 42.1 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina ------ inclusion threshold ------ 0.13 11.9 0.3 0.26 10.9 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.1 0.0 8.5e-15 6.9e-11 60 106 .. 672 718 .. 660 722 .. 0.90 Alignments for each domain: == domain 1 score: 42.1 bits; conditional E-value: 8.5e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007023_1 672 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 718 89*****9857999***7.**************************655 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.3 3.2e-05 0.26 9 19 .] 4523 4533 .. 4522 4533 .. 0.97 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 3.2e-05 DUF1725 9 LEnIILSEisQ 19 LE I+LSEi+Q T007023_1 4523 LEAIMLSEICQ 4533 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.70 # Mc/sec: 18893.74 // Query: T007023_2 [L=4622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-05 23.5 0.0 4.2e-05 23.0 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.0 2.6e-09 4.2e-05 170 210 .. 95 135 .. 91 140 .. 0.88 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 2.6e-09 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeede 210 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + T007023_2 95 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGP 135 789*******************************9886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.68 # Mc/sec: 19445.23 // Query: T007023_3 [L=4622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.67 # Mc/sec: 19735.46 // Query: T214276_1 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 6927.98 // Query: T214276_2 [L=1452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.23s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 7287.59 // Query: T214276_3 [L=1452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 7040.55 // Query: T215351_1 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 856 (0.052496); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 1768.95 // Query: T215351_2 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 644 (0.0394947); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 1862.05 // Query: T215351_3 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 525 (0.0321967); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 1829.94 // Query: T108852_1 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 5292.54 // Query: T108852_2 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.061 12.2 0.0 0.089 11.6 0.0 1.1 1 Glucokinase Glucokinase Domain annotation for each model (and alignments): >> Glucokinase Glucokinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 5.5e-06 0.089 100 145 .. 832 877 .. 830 883 .. 0.94 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 5.5e-06 Glucokinase 100 DfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvalli 145 Df+a y+ ++++l++++ ++++++++++v+ + GLG+++ + T108852_2 832 DFSANVYSSFICNSQKLITIQMSTNRSKEKRIVICPYEGLGACSNM 877 9*****************************************9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 5292.54 // Query: T108852_3 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 5470.10 // Query: T002462_1 [L=7791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.71 # Mc/sec: 31392.57 // Query: T002462_2 [L=7791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.41s 00:00:02.08 Elapsed: 00:00:00.71 # Mc/sec: 31392.57 // Query: T002462_3 [L=7790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.34s 00:00:02.06 Elapsed: 00:00:00.70 # Mc/sec: 31836.95 // Query: T032256_1 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.63 # Mc/sec: 1739.20 // Query: T032256_2 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 1922.28 // Query: T032256_3 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1922.28 // Query: T125922_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 9578.85 // Query: T125922_2 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 8547.28 // Query: T125922_3 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.61 # Mc/sec: 9103.07 // Query: T315171_1 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 2469.85 // Query: T315171_2 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-28 98.2 0.1 6.9e-28 97.5 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.5 0.1 4.3e-32 6.9e-28 30 190 .. 274 445 .. 252 452 .. 0.94 Alignments for each domain: == domain 1 score: 97.5 bits; conditional E-value: 4.3e-32 ........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TE CS RVT_1 30 Lkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeseg 125 ++++++k+++++q+gf pg + + ++ ++++++++ k+k+++++++D +kaFd++++++ +++l +++++ + +n+ik+++ ++++++ +nge+ + T315171_2 274 IQQHIKKIIHHDQVGFIPGMQGWFNIcksiNVIHHINRIKNKNHMIISIDAEKAFDKIQHPFMIKTLSKIGIQGTYLNIIKAIYDKPTANIILNGEKLKA 373 6789999**********************99999999999999*****************************************************99** PP EEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHH CS RVT_1 126 ryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveew 190 ++ + ++qG+ Pllfn+ ++ l r +r++ ++v+l ++aDD++++ +++++ ++le ++e+ T315171_2 374 FPLRTETRQGC---PLLFNIELEVLARAIRQEKeikgiqigkEEVKLWLFADDMIVYLENPKDsSRKCLELIKEF 445 ***********...78***************99***************************776588888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 319 (0.0195634); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 2849.83 // Query: T315171_3 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 2390.18 // Query: T228205_1 [L=6510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.43s 00:00:02.57 Elapsed: 00:00:00.84 # Mc/sec: 22171.43 // Query: T228205_2 [L=6509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-08 31.5 0.2 1.3e-07 30.7 0.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.2 8.3e-12 1.3e-07 305 357 .. 1582 1634 .. 1581 1639 .. 0.91 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 8.3e-12 HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTTT-SS CS Transposase_22 305 lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllkekner 357 lke+++q r lyPak+s+ +Ge+ f d +klr++ + +lk+ lke + T228205_2 1582 LKENNYQFRSLYPAKISFRDEGEMETFSDEEKLRKFAASTYTLKECLKEFFQI 1634 9************************************************5544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6509 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.12u 0.39s 00:00:02.51 Elapsed: 00:00:00.79 # Mc/sec: 23571.07 // Query: T228205_3 [L=6509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6509 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.39s 00:00:02.37 Elapsed: 00:00:00.99 # Mc/sec: 18809.23 // Query: T111697_1 [L=5556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.40s 00:00:02.23 Elapsed: 00:00:00.72 # Mc/sec: 22076.07 // Query: T111697_2 [L=5556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.39s 00:00:02.08 Elapsed: 00:00:00.76 # Mc/sec: 20914.17 // Query: T111697_3 [L=5555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.44s 00:00:02.28 Elapsed: 00:00:00.81 # Mc/sec: 19619.64 // Query: T364252_1 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 2031.77 // Query: T364252_2 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0072 16.2 4.2 0.013 15.3 4.2 1.4 1 DUF3439 Domain of unknown function (DUF3439) ------ inclusion threshold ------ 0.1 12.6 0.3 0.31 11.1 0.3 1.8 1 DUF2256 Uncharacterized protein conserved in bacteria (DUF2 Domain annotation for each model (and alignments): >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 4.2 1.6e-06 0.013 30 69 .. 175 214 .. 156 243 .. 0.80 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.6e-06 DUF3439 30 sakcsgsgkpvrsiicpttttttttttttmpttttlpttt 69 cs +p+ s+ tt tt+tttttt +t +l t T364252_2 175 VESCSQPARPLLSLAQTTTKTTATTTTTTKHATCALAYTN 214 5679************999999999999999999987553 PP >> DUF2256 Uncharacterized protein conserved in bacteria (DUF2256) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.3 3.8e-05 0.31 12 27 .. 96 111 .. 90 113 .. 0.92 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 3.8e-05 DUF2256 12 vCgrpftwRkkWekdW 27 C+ pf R+kW + W T364252_2 96 SCQVPFFGRRKWIRSW 111 7*************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.55 # Mc/sec: 1810.13 // Query: T364252_3 [L=347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 603 (0.0369803); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.63 # Mc/sec: 1575.73 // Query: T114444_1 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-102 343.2 20.3 2.5e-102 342.3 20.3 1.3 1 Transposase_22 L1 transposable element 0.0018 18.3 3.1 0.0038 17.2 2.0 2.1 2 Med2 Mediator complex subunit 2 0.0019 17.4 13.0 0.0033 16.7 13.0 1.4 1 GAS Growth-arrest specific micro-tubule binding 0.0049 16.9 8.1 0.01 15.9 8.1 1.6 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0051 15.1 1.7 0.0073 14.6 1.7 1.1 1 DUF4613 Domain of unknown function (DUF4613) ------ inclusion threshold ------ 0.018 14.8 2.8 0.029 14.1 2.8 1.3 1 Sec34 Sec34-like family 0.035 14.5 7.3 0.09 13.2 6.8 2.0 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.036 13.9 1.1 0.11 12.4 0.6 2.2 2 DUF465 Protein of unknown function (DUF465) 0.039 14.5 5.1 0.098 13.2 5.1 1.7 1 Occludin_ELL Occludin homology domain 0.14 11.0 0.3 0.2 10.5 0.3 1.1 1 ArAE_2_N Putative ER transporter, 6TM, N-terminal 0.21 10.8 11.2 0.32 10.2 11.2 1.2 1 APG6 Autophagy protein Apg6 0.25 11.2 3.3 0.42 10.5 3.3 1.3 1 DUF1664 Protein of unknown function (DUF1664) 0.95 7.9 8.2 1.4 7.3 8.2 1.2 1 DUF342 Protein of unknown function (DUF342) 1.2 8.7 11.4 2 8.1 11.4 1.2 1 IncA IncA protein 1.8 8.7 11.1 2.6 8.2 3.0 2.8 2 JIP_LZII JNK-interacting protein leucine zipper II 5 7.3 12.5 0.8 9.9 5.9 2.4 2 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 342.3 20.3 2.5e-105 2.5e-102 21 312 .. 150 409 .. 137 414 .. 0.95 Alignments for each domain: == domain 1 score: 342.3 bits; conditional E-value: 2.5e-105 XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX..................XXXX CS Transposase_22 21 stPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlkiikekqentskqvmemnkelle 108 + P++e+sssPat e++++++df+elr+e++++++y+el+ +i++k+ke+e ++k+++e ntek+lk el+e T114444_1 150 AFPSEERSSSPAT--EQSWMENDFDELREEGFRRSNYSELQKEIQTKGKEVEkFEKNLDEcitritNTEKCLK------------------ELME 224 4699*********..*********************************************8888888888888..................9*** PP XXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT CS Transposase_22 109 lktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkileqslqviqdtvkrPnlrliGvdesed 202 lk+k++el++e + sl+s++d+leervs +ede++e+ + e+k+rekr+k++eqslq+i+d+vkrPnlrliGv+es+ T114444_1 225 LKAKARELREEYR------------------SLRSQCDQLEERVSVMEDEMNEM-K*EGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDR 300 *************..................**********************9.5559************************************ PP --HHHHHHHHHHHHHHH-HHHHHHT---EEEEE.EESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHH CS Transposase_22 203 eqlkklenilnkiieenfPnlkkeanviiqeiy.rtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarr 296 e+++klen+l++ii+enfPnl+++an++iqe rtP+r +s+ra++rhiivr+tkv++k+k+l+a+rekG+vt kGkP+rlt dlsaetl+arr T114444_1 301 ENGTKLENTLQDIIQENFPNLARQANIQIQE-I*RTPQRCSSRRATPRHIIVRFTKVEMKEKMLRAAREKGQVTHKGKPVRLTVDLSAETLQARR 394 ******************************9.566************************************************************ PP HHHHHHHHHHHTT--- CS Transposase_22 297 ewtdviqilkekkfqP 312 ew+++++ lk + f P T114444_1 395 EWAPIFN-LKKRIFNP 409 ******9.56666666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 2.0 3.7e-06 0.0038 44 92 .. 191 239 .. 176 248 .. 0.80 2 ? -1.8 0.0 3.1 3.2e+03 3 15 .. 303 315 .. 301 325 .. 0.87 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 3.7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeee 92 +++ ++++kF++ LD+ ++++++++++++l+e k + +e++e ++ T114444_1 191 IQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSL 239 45556789******************************99998865544 PP == domain 2 score: -1.8 bits; conditional E-value: 3.1 Med2 3 enkLtqclddiLk 15 +kL+++l+di++ T114444_1 303 GTKLENTLQDIIQ 315 589********86 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 13.0 3.3e-06 0.0033 46 126 .. 181 261 .. 167 279 .. 0.94 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 3.3e-06 GAS 46 ekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdely 126 + + se+++e + ++++k ek+++e +++n ek ++l++lka+ +el +e+++l+ + ++l++r++ +e+e +e++ T114444_1 181 RSNYSELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEMNEMK 261 56789************************************************************************9985 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 8.1 1e-05 0.01 6 99 .. 166 259 .. 163 261 .. 0.97 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ +e+ ++ ++ ++ l+e+ ++ + k +++++ k++a el++e ++l + ++le++++ +e+e+++ T114444_1 166 WMENDFDELREEGFRRSNYSELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEMNE 259 7789***************************************************************************************997 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 1.7 7.2e-06 0.0073 526 605 .. 159 239 .. 132 244 .. 0.68 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 7.2e-06 DUF4613 526 epvnrsaalasasstsdesstpespkve.................kkknlekekeaeqlskelerlsekltevqqsLseltdllqngkksspvYpls 605 +p++++ +++ + +k+ +k ke+e+++k+l++ ++++t+ +++L el++l+ + ++ +Y ++ T114444_1 159 SPATEQSWMEN----------------DfdelreegfrrsnyselQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSL 239 33333332222................0222222233333344448899999************************************999999776 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 2.8 2.9e-05 0.029 3 57 .. 199 253 .. 197 261 .. 0.89 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 2.9e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrl 57 +++e++ +ec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + + T114444_1 199 EKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVM 253 788999******************************************8766555 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 6.8 8.8e-05 0.09 3 95 .. 184 285 .. 181 288 .. 0.70 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 8.8e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek..npsk..fkidekelsrrrafvee 90 + e ++e+q + +++e+ +++ +++ ++++ ++ el+ +eLr+++rs++ + ++Lee v+++e n+ k k +ek ++r ++ ++e T114444_1 184 YSELQKEIQTKGKEVEKFEKNLdeciTRITNTEKClKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDemNEMK*eGKFREKRIKRNEQSLQE 280 5667777776666666666666322334333333355999******************************873344555556778888887777777 PP Syntaxin-6_N 91 vreev 95 + + v T114444_1 281 IWDYV 285 76655 PP >> DUF465 Protein of unknown function (DUF465) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 4.9 5e+03 7 16 .. 183 192 .. 181 198 .. 0.85 2 ? 12.4 0.6 0.00011 0.11 2 34 .. 230 261 .. 230 261 .. 0.95 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 4.9 HHHHHHHHHH CS DUF465 7 eHeeLdkeIh 16 + eL keI+ T114444_1 183 NYSELQKEIQ 192 699******7 PP == domain 2 score: 12.4 bits; conditional E-value: 0.00011 HHHHHHHHHHHHHHHHHHTT-..S-HHHHHHHH CS DUF465 2 akLeeeHeeLdkeIhalearpvptddleierLK 34 ++L+ee++ L + ++le+r++ + e+ ++K T114444_1 230 RELREEYRSLRSQCDQLEERVS-VMEDEMNEMK 261 68********************.9999999998 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 5.1 9.6e-05 0.098 23 94 .. 183 255 .. 178 261 .. 0.89 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 9.6e-05 Occludin_ELL 23 eYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKk 94 +Y+el++e+++ k+++++e++l+e ++ ++++k +e l e+k + + +ey++ + +c++L+e+ s++ T114444_1 183 NYSELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKE-LMELKAKARelREEYRSLRSQCDQLEERVSVMED 255 7**************************************.666666666589**************99888765 PP >> ArAE_2_N Putative ER transporter, 6TM, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.3 0.0002 0.2 246 331 .. 170 261 .. 153 330 .. 0.76 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0002 ArAE_2_N 246 flatlepsneselnfkklekditkirslypkleavlsflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravvl......k 331 + +l+++ +n+++l+k+i+ ++++k e l +++ ++ + ++++++el+ r l +L +d lee+++v+ k T114444_1 170 DFDELREEGFRRSNYSELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVMEdemnemK 261 3444444444449*******************************************************************884444333330 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 11.2 0.00032 0.32 23 106 .. 179 259 .. 164 288 .. 0.56 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00032 APG6 23 kerdayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrerna 106 r +y+e+ k+++++ k+ ek +++l++ + ++ ++e+ l+el el+++ +el+ee+++l++++++lee+ + + +e n+ T114444_1 179 FRRSNYSELQKEIQTKGKEVEK--FEKNLDECITRI-TNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEMNE 259 4466777777777666444432..122222222223.34445555666666666666666666666666666555554444444 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 3.3 0.00042 0.42 46 117 .. 187 257 .. 181 261 .. 0.48 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00042 DUF1664 46 vskqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskl 117 + k++++ +++++ ++L + i r+ ++ +++ + e+k++ e+re+ ++++++ ++++e v+ +e + T114444_1 187 LQKEIQTKGKEVEKFEKNLDECITRITNT-EKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEM 257 44444445555555555555555555433.333333344455555555555555555555555555555555 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 8.2 0.0014 1.4 337 411 .. 182 253 .. 171 286 .. 0.80 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0014 DUF342 337 eklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411 ++++el++e++ +e+ek +k+++++ ++ +++++++l +l+ + +l+ee+++l+ + ++l+e++ + T114444_1 182 SNYSELQKEIQTKGKEVEKFEKNLDECIT-RI--TNTEKCLKELMELKAKARELREEYRSLRSQCDQLEERVSVM 253 56799999999999999999999888887.44..34688888888888888888888888888888888887766 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 11.4 0.0019 2 76 150 .. 165 261 .. 135 288 .. 0.57 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0019 IncA 76 e...................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirelr 150 s+lq e++ +++ e+ l++ +r+ +e++lk+l e + + + ee +s++s+++ lee+++ ++ e+ e+ T114444_1 165 SwmendfdelreegfrrsnySELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLKELMELKAKARelrEEYRSLRSQCDQLEERVSVMEDEMNEMK 261 1555555555555666666666666666666666666666666666666666666666666666664445555555555555555555555555555 PP >> JIP_LZII JNK-interacting protein leucine zipper II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 1.3 0.025 26 37 71 .] 186 220 .. 183 220 .. 0.94 2 ? 8.2 3.0 0.0025 2.6 34 70 .. 221 257 .. 218 258 .. 0.91 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.025 JIP_LZII 37 eLtsereiLreEleslqkakerlesrikelEeelk 71 eL++e ++ +E+e+ +k+++++ +ri+++E+ lk T114444_1 186 ELQKEIQTKGKEVEKFEKNLDECITRITNTEKCLK 220 899999999**********************9887 PP == domain 2 score: 8.2 bits; conditional E-value: 0.0025 JIP_LZII 34 rvdeLtsereiLreEleslqkakerlesrikelEeel 70 ++ eL+ LreE +sl+++ ++le+r++ +E+e+ T114444_1 221 ELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEM 257 56689999999************************98 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.7 0.68 6.9e+02 26 50 .. 182 206 .. 176 217 .. 0.75 2 ? 9.9 5.9 0.00079 0.8 32 79 .. 219 273 .. 208 284 .. 0.71 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.68 KLRAQ 26 akeaelkeelkekeqslrkseqEvd 50 ++ +el++e+++k +++ k+e+ +d T114444_1 182 SNYSELQKEIQTKGKEVEKFEKNLD 206 5667778888888888888777766 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00079 KLRAQ 32 keelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsk 79 +el e +++ r ++E sL + +qLe rv+++ +e++e + K++ + T114444_1 219 LKELMELKAKARELREEYRSLRSQCDQLEERVSVMEDEMNEMK*egkfreKRIKR 273 3455555666788889************************988885333222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 925 (0.0567276); expected 326.1 (0.02) Passed bias filter: 339 (0.0207899); expected 326.1 (0.02) Passed Vit filter: 93 (0.00570342); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 3615.43 // Query: T114444_2 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-09 37.4 1.1 2.7e-09 36.8 1.1 1.3 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.031 14.4 0.0 0.05 13.7 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.8 1.1 3.3e-13 2.7e-09 2 118 .. 600 723 .. 599 724 .. 0.83 Alignments for each domain: == domain 1 score: 36.8 bits; conditional E-value: 3.3e-13 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + + +++ ++ +eL + l++ +l + ++k++ tf s + T114444_2 600 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTIIMGDFNTPLSILDRSMRQKvNKDTQELNSALHQVDLIDIyrtLHPKSTeYTFFSAPHhtY 691 7999***9999.777777778888888876.89*********999999877778***************9966666444444477766666568 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s iD t+ s+ l+ + ++ ++++SDH++i T114444_2 692 SKIDHTVGSKALLSKckRSEIITNCLSDHSAI 723 ***************99777789******998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 6.2e-06 0.05 60 113 .] 558 720 .. 491 720 .. 0.77 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 6.2e-06 STTSSEEEEEECSEEEEE......................................................EEEEEE-SS............... CS xxxxxxxxxxxxxxxxxx......................................................xxxxxxxxx............... RF Exo_endo_phos 60 gkgqggvavlsrfpltsl......................................................vivlGDfNa............... 86 ++++ gva+l++ + + + i++GDfN+ T114444_2 558 KTKKAGVAILVSDKTDFKpikikrdkeghyimvkglvqqeeltilniyapntgaprfikqvlsdlqrdldshTIIMGDFNTplsildrsmrqkvnk 653 556677777777777555667777777777777777777788888888888888888888888888888888*********999888888888888 PP .......................................-BEEEEEEHHHHTTEEEEEEECCH.....SSB CS .......................................xxxxxxxxxxxxxxxxxxxxxxxx.....xxx RF Exo_endo_phos 87 .......................................rlDrilaskelatersgvldepla.....SDH 113 +D+++ sk+l + + SDH T114444_2 654 dtqelnsalhqvdlidiyrtlhpksteytffsaphhtysKIDHTVGSKALLSKCKRSE----IitnclSDH 720 8888888888888777777777777777777777777777788888773333333332....033346888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3897.88 // Query: T114444_3 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-29 103.3 0.4 2e-29 102.5 0.4 1.3 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.017 15.2 0.0 0.031 14.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.5 0.4 2.5e-33 2e-29 304 367 .. 400 465 .. 388 466 .. 0.95 Alignments for each domain: == domain 1 score: 102.5 bits; conditional E-value: 2.5e-33 HHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 304 ilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 lkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq+l++ T114444_3 400 QLKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQPLQNR 465 49**************************************************************96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 3.9e-06 0.031 1 47 [. 501 543 .. 501 566 .. 0.79 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.9e-06 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlp 47 lt Nvng ++ + ++ +la+++k++d+ v ++qE + +++ + T114444_3 501 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQEPHLTCRDKYR 543 699****....7778899*******************8776665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 620 (0.0380228); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 3563.78 // Query: T136335_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 2011.66 // Query: T136335_2 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 23.8 0.0 5.6e-05 22.7 0.0 1.5 1 Homeobox Homeobox domain Domain annotation for each model (and alignments): >> Homeobox Homeobox domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.0 3.5e-09 5.6e-05 2 43 .. 34 75 .. 33 78 .. 0.89 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 3.5e-09 T-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHH CS Homeobox 2 rkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerq 43 ++R++f++e l+eL+e F en yp+ ++r+ LA+k + + ++ T136335_2 34 KHRHKFSEELLQELKEIFGENGYPDFTTRKTLANKFDCPVNV 75 79********************************98766655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 741 (0.0454434); expected 326.1 (0.02) Passed bias filter: 430 (0.0263707); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 2218.40 // Query: T136335_3 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 1806.41 // Query: T017176_1 [L=3277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.44s 00:00:01.84 Elapsed: 00:00:00.82 # Mc/sec: 11432.85 // Query: T017176_2 [L=3276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.45s 00:00:01.84 Elapsed: 00:00:00.84 # Mc/sec: 11157.24 // Query: T017176_3 [L=3276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.44s 00:00:01.79 Elapsed: 00:00:00.83 # Mc/sec: 11291.66 // Query: T331208_1 [L=110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 552.09 // Query: T331208_2 [L=109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 511.20 // Query: T331208_3 [L=109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.67 # Mc/sec: 465.42 // Query: T358357_1 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.75 # Mc/sec: 5149.49 // Query: T358357_2 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 5513.23 // Query: T358357_3 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-39 136.5 1.8 1.4e-39 136.1 1.8 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.1 1.8 8.5e-44 1.4e-39 2 139 .. 901 1036 .. 900 1044 .. 0.93 Alignments for each domain: == domain 1 score: 136.1 bits; conditional E-value: 8.5e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpss 91 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358357_3 901 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP-- 992 7****************************97765324444559*******************************.******************.. PP RBP_receptor 92 ksekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358357_3 993 -----QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 1036 .....9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 6432.10 // Query: T277783_1 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 5934.05 // Query: T277783_2 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.71 # Mc/sec: 5516.16 // Query: T277783_3 [L=1368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.75 # Mc/sec: 5218.15 // Query: T346943_1 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-08 33.4 3.6 5.9e-08 32.3 3.6 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.3 3.6 3.6e-12 5.9e-08 11 40 .. 237 273 .. 237 281 .. 0.96 Alignments for each domain: == domain 1 score: 32.3 bits; conditional E-value: 3.6e-12 Transposase_1 11 Wldkgetpkkvpkpelhq.......kkvmltVwWsak 40 Wld++e pk++pkp+l+q kkvm+tVwWs++ T346943_1 237 WLDQEEVPKHFPKPNLSQkkkkkkkKKVMVTVWWSTA 273 ***********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 2357.72 // Query: T346943_2 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-14 52.2 0.3 9.7e-14 50.9 0.3 1.8 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.029 14.1 0.0 0.056 13.2 0.0 1.5 1 HTH_5 Bacterial regulatory protein, arsR family 0.12 12.2 0.0 0.3 10.9 0.0 1.6 2 MarR_2 MarR family Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.9 0.3 1.8e-17 9.7e-14 39 79 .. 274 314 .. 241 315 .. 0.92 Alignments for each domain: == domain 1 score: 50.9 bits; conditional E-value: 1.8e-17 Transposase_1 39 akgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +++li+y++ ++getitse+Yaqq+d+++qklq+++palvn T346943_2 274 TASLIHYSLPNSGETITSEKYAQQIDEMHQKLQCLQPALVN 314 689************************************98 PP >> HTH_5 Bacterial regulatory protein, arsR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 1e-05 0.056 10 39 .. 148 178 .. 146 181 .. 0.83 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1e-05 HHTT.SSEEHHHHHHHHTS-HHHHHHHHHHH CS HTH_5 10 lLae.gelcvcelaeelglsqstvShHLkkL 39 + e + + e +eel++ stv +HLk+ T346943_2 148 AIIEgDPPTTQEVVEELNVDHSTVIRHLKQI 178 55665678999******************96 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 5.5e-05 0.3 11 43 .. 146 176 .. 145 178 .. 0.90 2 ? -3.2 0.0 1.4 7.4e+03 35 50 .. 327 342 .. 326 342 .. 0.82 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 5.5e-05 HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdltvselarrlglsksavsrilk 43 L a+ + ++ t +e+ ++l++++s+v r lk T346943_2 146 LRAIIEGDP--PTTQEVVEELNVDHSTVIRHLK 176 678888998..6******************998 PP == domain 2 score: -3.2 bits; conditional E-value: 1.4 HHHHHHHHHHHHHTTS CS MarR_2 35 ksavsrilkrLvaaGL 50 ++ ++ +l++L + G+ T346943_2 327 PHGAQTVLQKLNKLGY 342 6788999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 365 (0.0223844); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 2170.60 // Query: T346943_3 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2624.26 // Query: T368130_1 [L=4927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.43s 00:00:02.21 Elapsed: 00:00:00.76 # Mc/sec: 18546.46 // Query: T368130_2 [L=4927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 602 (0.0369189); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.48s 00:00:02.38 Elapsed: 00:00:00.89 # Mc/sec: 15837.43 // Query: T368130_3 [L=4926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.76 # Mc/sec: 18542.70 // Query: T199682_1 [L=812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 569 (0.0348951); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 3519.69 // Query: T199682_2 [L=812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 712 (0.0436649); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 3808.19 // Query: T199682_3 [L=811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 793 (0.0486324); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.75 # Mc/sec: 3093.51 // Query: T125955_1 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.82 # Mc/sec: 6011.23 // Query: T125955_2 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.74 # Mc/sec: 6661.09 // Query: T125955_3 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 7468.50 // Query: T101437_1 [L=3103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.60 # Mc/sec: 14795.26 // Query: T101437_2 [L=3103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.61 # Mc/sec: 14552.71 // Query: T101437_3 [L=3102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.63 # Mc/sec: 14086.18 // Query: T266400_1 [L=170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00063 20.1 4.5 0.00073 19.9 4.5 1.3 1 RNA_pol_Rpc4 RNA polymerase III RPC4 ------ inclusion threshold ------ 0.014 15.4 3.3 0.014 15.4 3.3 1.2 1 DDHD DDHD domain 0.43 10.5 4.7 0.43 10.5 4.7 1.1 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmembr 1.3 9.2 24.1 1.9 8.7 24.1 1.3 1 DUF3807 Protein of unknown function (DUF3807) 2.1 8.4 12.7 2.9 7.9 12.7 1.2 1 DAG_kinase_N Diacylglycerol kinase N-terminus 5.4 6.3 20.0 7.2 5.9 20.0 1.1 1 DUF1510 Protein of unknown function (DUF1510) 5.9 5.4 18.1 7.5 5.1 18.1 1.0 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 4.5 3.1e-07 0.00073 22 83 .. 106 166 .. 36 170 .] 0.61 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 3.1e-07 RNA_pol_Rpc4 22 aaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklkslpeG 83 ++e+ k+e+k++++ ++k ++++k k++ +++++k +kkk++++kkkk+++++k+++ G T266400_1 106 EREEGKKEKKEKRKRRKKMKMKKKRRKRKRKKKKKK-KKKKKKERKKKKEERRKKKEERRRG 166 233333344444344444444444433333333333.3333333444444444444444445 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 3.3 6e-06 0.014 134 194 .. 94 160 .. 16 168 .. 0.49 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 6e-06 DDHD 134 laesqkshe....rssesskesqeskaaesssasssaksssaee.kveledkelee.eaeekkakvr 194 +e++ e r++ ++++++++k++++ ++++++++ + ++ k++ ++k+ e+ +++e+++k + T266400_1 94 REENERGGErpreREEGKKEKKEKRKRRKKMKMKKKRRKRKRKKkKKKKKKKKKERkKKKEERRKKK 160 2222222221111111111111111111111111111111111111111111111122222222222 PP >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 4.7 0.00018 0.43 125 174 .. 106 155 .. 29 168 .. 0.49 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00018 ------------------------------------SS---TTGGG--.. CS Neur_chan_memb 125 gasseaeelilskskseskkaklseeqgsekastckckckegeeaspstq 174 ++ ++e + ++++ + +k k+++++ ++k++++k k+k++e+++++++ T266400_1 106 EREEGKKEKKEKRKRRKKMKMKKKRRKRKRKKKKKKKKKKKKERKKKKEE 155 11111111111111111111111111111111111111111111111111 PP >> DUF3807 Protein of unknown function (DUF3807) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 24.1 0.00079 1.9 78 137 .. 103 160 .. 69 169 .. 0.29 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00079 DUF3807 78 e....eeeeeedkeaed......ssseeseeqekkkkkakkskkkkkrakkakekkkkkeekkidlrkrt 137 + e ++++e+ ++ + +++++k+k++kk+kkkkk++k++k+k k+++rk++ T266400_1 103 RprerE-----EGKKEKkekrkrRKKMKMKKKRRKRKRKKKKKKKKKKKKERKKK-------KEERRKKK 160 121110.....11111100000011111111111111111111111111111111.......11111111 PP >> DAG_kinase_N Diacylglycerol kinase N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 12.7 0.0013 2.9 72 137 .. 68 157 .. 67 167 .. 0.37 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0013 DAG_kinase_N 72 FlsFqkkesqees.......................pesqkkeasksssseenvl..kkseesllkskkkkkekkekkkksekkksseelk 137 F sFq+ e +++s p+++++++++++++++ + k++++ ++ +k+kkk+kk+kkkk+e+kk++ee + T266400_1 68 FFSFQHFELSSHSllalkvsmemsaareenerggerPREREEGKKEKKEKRKRRKkmKMKKKRRK-RKRKKKKKKKKKKKKERKKKKEERR 157 77777777776666666666666666655555554433333322222222222221112111111.1111122222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 20.0 0.0031 7.2 55 110 .. 107 159 .. 77 167 .. 0.26 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0031 DUF1510 55 eeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeena 110 +ee kke++e+ ++ +k + ++++ + k +++++++k++++e++k++++ ++ T266400_1 107 REEG---KKEKKEKRKRRKKMKMKKKRRKRKRKKKKKKKKKKKKERKKKKEERRKK 159 1111...1111111111111111111111111111111111111111111111111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 18.1 0.0032 7.5 234 305 .. 88 161 .. 69 168 .. 0.31 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0032 Presenilin 234 vakaeeeeeaekkeeeaseeskeeesee..esseksassseseeeeeeesaeaeseaeesseekeeeessesse 305 +++++ +ee+e+ e+ +e+++ +++++ ++ +k+ ++++++++++++++++++++++++++k++ee+++++e T266400_1 88 MEMSAAREENERGGERPREREEGKKEKKekRKRRKKMKMKKKRRKRKRKKKKKKKKKKKKERKKKKEERRKKKE 161 33333333333322222222222222220022222222222222222222222222222222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3169 (0.194346); expected 326.1 (0.02) Passed bias filter: 1032 (0.0632896); expected 326.1 (0.02) Passed Vit filter: 491 (0.0301116); expected 16.3 (0.001) Passed Fwd filter: 117 (0.00717527); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.14u 0.44s 00:00:01.57 Elapsed: 00:00:00.71 # Mc/sec: 684.99 // Query: T266400_2 [L=170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1297 (0.0795413); expected 326.1 (0.02) Passed bias filter: 318 (0.019502); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 838.52 // Query: T266400_3 [L=169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00022 21.6 2.7 0.00022 21.6 2.7 1.1 1 RNA_pol_Rpc4 RNA polymerase III RPC4 ------ inclusion threshold ------ 0.07 11.9 6.6 0.077 11.8 6.6 1.1 1 DUF913 Domain of Unknown Function (DUF913) 0.32 11.0 6.8 0.32 10.9 6.8 1.1 1 DDHD DDHD domain 2.7 7.6 28.8 3.1 7.4 28.8 1.0 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 2.7 5.3e-08 0.00022 24 74 .. 111 161 .. 44 169 .] 0.53 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 5.3e-08 RNA_pol_Rpc4 24 eddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkska 74 e+++ e+k++++++++++ee+++e+e+++e+ee++e kke+++ kkk++++ T266400_3 111 EGEEGEEKEEKENEDEEKEEEEEEEEEEEEEEEEEERKKEEERRKKKEERR 161 222222222222222222222222222222222222222222222222222 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 6.6 1.9e-05 0.077 275 308 .. 110 153 .. 65 168 .. 0.46 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 1.9e-05 DUF913 275 sssssetkeeekssededvemeda..........eaetesesde 308 ++ ++++++eek++ede++e+e++ e+e+++e++ T266400_3 110 EEGEEGEEKEEKENEDEEKEEEEEeeeeeeeeeeEEERKKEEER 153 22222222222211111111111100111111111111111111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 6.8 7.9e-05 0.32 138 184 .. 115 160 .. 63 169 .] 0.45 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 7.9e-05 DDHD 138 qksherssesskesqeskaaesssasssaksssaeekveledkelee 184 +++ +++e+++e++e++++e++++++++++++ ++++e ++k++e+ T266400_3 115 GEEK-EEKENEDEEKEEEEEEEEEEEEEEEEEERKKEEERRKKKEER 160 1111.111111111111111111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 28.8 0.00076 3.1 88 151 .. 103 164 .. 80 169 .] 0.42 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00076 RR_TM4-6 88 kklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkaksk 151 k +++ ++ ee ee+ee+e+e+eek+++e++e+ee+e+e+ee++k++ee+ ++k+ ++k+k T266400_3 103 TKRKRRGEEGEEGEEKEEKENEDEEKEEEEEEEEEEEEEEEEEERKKEEERRKKKEE--RRKKK 164 222233344444444445555554444444444333333322222222222222222..22222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2241 (0.137434); expected 326.1 (0.02) Passed bias filter: 792 (0.0485711); expected 326.1 (0.02) Passed Vit filter: 420 (0.0257574); expected 16.3 (0.001) Passed Fwd filter: 109 (0.00668466); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.04u 0.43s 00:00:01.47 Elapsed: 00:00:00.72 # Mc/sec: 671.50 // Query: T062750_1 [L=578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2952.79 // Query: T062750_2 [L=578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 2362.23 // Query: T062750_3 [L=578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 92 (0.00564209); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 2505.39 // Query: T183051_1 [L=3830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.63 # Mc/sec: 17392.03 // Query: T183051_2 [L=3829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.80 # Mc/sec: 13692.65 // Query: T183051_3 [L=3829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.81 # Mc/sec: 13523.60 // Query: T172377_1 [L=1764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.75 # Mc/sec: 6728.67 // Query: T172377_2 [L=1764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 7209.29 // Query: T172377_3 [L=1763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.8 4.1 89 3.0 0.4 3.4 3 DUF1388 Repeat of unknown function (DUF1388) Domain annotation for each model (and alignments): >> DUF1388 Repeat of unknown function (DUF1388) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.0072 1.2e+02 11 23 .. 215 227 .. 214 228 .. 0.78 2 ? 3.0 0.4 0.0054 89 10 20 .. 246 256 .. 246 258 .. 0.64 3 ? 2.0 0.1 0.011 1.9e+02 19 26 .. 1084 1091 .. 1080 1098 .. 0.60 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.0072 DUF1388 11 KSPgeaKSPgeaK 23 +SPg+ ++Pg+ + T172377_3 215 QSPGSHRTPGSLR 227 7888888888876 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0054 DUF1388 10 aKSPgeaKSPg 20 a+SP ++K+P+ T172377_3 246 AQSPSSRKTPV 256 56777777776 PP == domain 3 score: 2.0 bits; conditional E-value: 0.011 DUF1388 19 PgeaKSPv 26 Pg+++SPv T172377_3 1084 PGSNRSPV 1091 44444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 7005.06 // Query: T113764_1 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 9844.39 // Query: T113764_2 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 9840.47 // Query: T113764_3 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 10262.21 // Query: T156372_1 [L=2384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.31s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 9216.51 // Query: T156372_2 [L=2384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 8973.97 // Query: T156372_3 [L=2383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.79 # Mc/sec: 8629.57 // Query: T265110_1 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 2763.93 // Query: T265110_2 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-19 69.9 0.7 3.1e-19 69.0 0.7 1.5 1 Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain 8.7e-05 23.1 1.0 0.0002 22.0 1.0 1.6 1 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain ------ inclusion threshold ------ 0.017 15.1 1.5 0.047 13.6 1.5 1.7 1 Myb_DNA-bind_5 Myb/SANT-like DNA-binding domain Domain annotation for each model (and alignments): >> Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.0 0.7 5.6e-23 3.1e-19 2 90 .] 70 157 .. 69 157 .. 0.90 Alignments for each domain: == domain 1 score: 69.0 bits; conditional E-value: 5.6e-23 SSS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS.SSS----S---TT-XXXX CS Myb_DNA-bind_4 2 dkWseeetrlLieawgerilelrfqergkkrnkklWeevaeamaergyersakqCkdKienLkkrYkkeke.rekgsgsswpffeeldal 90 ++W+ e+r+Li++w+++ + ++ +g+ rnk++++++a+++++ g++r kqC++K++nLk +Yk ++ + g ++s++ff elda+ T265110_2 70 KHWTVPEVRALIDIWSDKSIQRQL--EGTVRNKRIFQQIAAKLQKFGIDRDWKQCRTKYKNLKHEYKIVRTaQDLGMTKSMKFFTELDAI 157 58***************6555555..58******************************************944568889*********86 PP >> Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.0 1.0 3.7e-08 0.0002 1 72 [. 71 140 .. 71 147 .. 0.91 Alignments for each domain: == domain 1 score: 22.0 bits; conditional E-value: 3.7e-08 Myb_DNA-bind_3 1 eWspeetkilvdllleqveagnriekntfkkeawkeivkkfnektglkytkkqlknrwkklkkeyrlwkell 72 +W+ e + l+d++ ++ ++ e++ +k+ +++i++k++++ g + kq++ ++k+lk ey++++ + T265110_2 71 HWTVPEVRALIDIWSDKSIQRQL-EGTVRNKRIFQQIAAKLQKF-GIDRDWKQCRTKYKNLKHEYKIVRTAQ 140 7****************888888.79**************9765.59********************99765 PP >> Myb_DNA-bind_5 Myb/SANT-like DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 1.5 8.7e-06 0.047 34 73 .. 96 134 .. 69 138 .. 0.80 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 8.7e-06 Myb_DNA-bind_5 34 nkaKsraWeeiaervnalgsveRtaeelkkkwedlkrraK 73 +++ +r++++ia++++++g ++R++++ ++k+++lk + K T265110_2 96 TVRNKRIFQQIAAKLQKFG-IDRDWKQCRTKYKNLKHEYK 134 566789*********8876.69**************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 3006.38 // Query: T265110_3 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.53 # Mc/sec: 3233.28 // Query: T277879_1 [L=1843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 608 (0.0372869); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 9586.38 // Query: T277879_2 [L=1843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 600 (0.0367963); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 9948.13 // Query: T277879_3 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 9942.73 // Query: T275254_1 [L=3530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.59 # Mc/sec: 17116.49 // Query: T275254_2 [L=3529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.54 # Mc/sec: 18696.05 // Query: T275254_3 [L=3529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00033 20.7 0.0 0.00063 19.8 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.016 14.6 0.0 0.027 13.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 7.7e-08 0.00063 6 89 .. 908 986 .. 904 986 .. 0.84 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 7.7e-08 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 ++++ ++gk++ +l+ t A+++ ++ + P + a+ ++ Gi + ++ ++ ++ +l + f+ s++++p++pv+llG T275254_3 908 RVTLTVEGKPVPFLINTEATHSTLPSFQGPVS----LASITVVGINSQASKPLKTPQLWcQLRQYSFK--HSFFVIPTCPVPLLG 986 578999**************************....**********9997777766443034444455..5************99 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 3.3e-06 0.027 137 181 .. 707 751 .. 678 751 .. 0.91 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 3.3e-06 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ + rr+t dp+ + + + + fi+qsa+di+ T275254_3 707 YKNPAQFMAHSAATLRRFTALDPKRSKGRLMLNIHFITQSAPDIK 751 568****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 18356.13 // Query: T379782_1 [L=488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2849.15 // Query: T379782_2 [L=487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.99 9.2 26.5 9.3 6.1 0.6 6.8 7 DUF378 Domain of unknown function (DUF378) 1.1 9.3 19.9 26 5.0 0.1 8.7 10 LHC Antenna complex alpha/beta subunit 2.1 8.1 26.1 33 4.3 0.4 7.6 8 MEF2_binding MEF2 binding Domain annotation for each model (and alignments): >> DUF378 Domain of unknown function (DUF378) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.8 1.5 8e+03 13 24 .. 108 119 .. 100 120 .. 0.72 2 ? 4.2 0.2 0.0068 37 5 24 .. 205 224 .. 201 232 .. 0.88 3 ? 5.2 0.0 0.0033 18 5 24 .. 247 266 .. 244 269 .. 0.88 4 ? 5.4 0.2 0.0028 15 5 24 .. 289 308 .. 286 317 .. 0.88 5 ? 6.1 0.6 0.0017 9.3 5 24 .. 350 369 .. 347 384 .. 0.90 6 ? -1.9 0.0 0.55 3e+03 14 24 .. 380 390 .. 371 392 .. 0.80 7 ? 3.8 0.1 0.0087 47 4 24 .. 454 474 .. 451 477 .. 0.87 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 1.5 DUF378 13 iGalNWGliGlf 24 a+ WG+ G f T379782_2 108 SEAVPWGITGCF 119 55899**99977 PP == domain 2 score: 4.2 bits; conditional E-value: 0.0068 DUF378 5 kialiLviiGalNWGliGlf 24 +++l+L + Ga+ WG+ G f T379782_2 205 RLCLLLNVRGAVPWGTTGSF 224 689*************9955 PP == domain 3 score: 5.2 bits; conditional E-value: 0.0033 DUF378 5 kialiLviiGalNWGliGlf 24 +++l+L i Ga+ WG+ G f T379782_2 247 RLCLLLNIRGAVPWGTTGSF 266 689*************9965 PP == domain 4 score: 5.4 bits; conditional E-value: 0.0028 DUF378 5 kialiLviiGalNWGliGlf 24 +++l+L i Ga+ WG+ G f T379782_2 289 RLCLLLNIRGAVPWGTTGSF 308 689*************9955 PP == domain 5 score: 6.1 bits; conditional E-value: 0.0017 DUF378 5 kialiLviiGalNWGliGlf 24 +++l+L i Ga+ WG+ G f T379782_2 350 RLCLLLNIRGAVSWGTTGSF 369 689*************9955 PP == domain 6 score: -1.9 bits; conditional E-value: 0.55 DUF378 14 GalNWGliGlf 24 G + W +iG f T379782_2 380 GTISWCIIGSF 390 8999*999965 PP == domain 7 score: 3.8 bits; conditional E-value: 0.0087 DUF378 4 dkialiLviiGalNWGliGlf 24 +++l+L i Ga+ W + G f T379782_2 454 FWLCLLLYIRGAVPWATTGSF 474 589************999855 PP >> LHC Antenna complex alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 0.26 1.4e+03 3 13 .. 121 131 .. 121 140 .. 0.82 2 ? 0.9 0.0 0.094 5.1e+02 4 16 .. 164 176 .. 164 179 .. 0.83 3 ? 5.0 0.1 0.0048 26 3 21 .. 184 202 .. 184 204 .. 0.88 4 ? -2.0 0.1 0.72 3.9e+03 5 22 .. 228 246 .. 226 251 .. 0.57 5 ? 4.4 0.0 0.0074 40 3 20 .. 268 285 .. 268 292 .. 0.85 6 ? -2.9 0.1 1.4 7.6e+03 4 20 .. 311 328 .. 310 330 .. 0.47 7 ? 2.3 0.0 0.033 1.8e+02 3 16 .. 371 384 .. 371 391 .. 0.83 8 ? -3.0 0.1 1.5 8.2e+03 4 15 .. 393 404 .. 392 412 .. 0.53 9 ? -1.0 0.1 0.36 1.9e+03 3 19 .. 434 450 .. 434 457 .. 0.80 10 ? 1.0 0.0 0.088 4.8e+02 3 13 .. 476 486 .. 476 487 .] 0.88 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.26 HHHHH...HHH CS LHC 3 kiWelvdPhrg 13 ++W+l+ P ++ T379782_2 121 RLWLLLSPKET 131 78******876 PP == domain 2 score: 0.9 bits; conditional E-value: 0.094 HHHH...HHHHHH CS LHC 4 iWelvdPhrglva 16 +W+l+ P++++ + T379782_2 164 LWLLLSPRGTISS 176 6*******99866 PP == domain 3 score: 5.0 bits; conditional E-value: 0.0048 HHHHH...HHHHHHHHHHH CS LHC 3 kiWelvdPhrglvallgff 21 ++W l++P++ +++++++ T379782_2 184 RLWILLNPREAVPWGTTGT 202 68************99875 PP == domain 4 score: -2.0 bits; conditional E-value: 0.72 HHH...HH.HHHHHHHHHH CS LHC 5 WelvdPhr.glvallgffa 22 W+l+ ++ +++ ++g+f+ T379782_2 228 WLLLSSRGtMFWGITGSFF 246 5555544315677777776 PP == domain 5 score: 4.4 bits; conditional E-value: 0.0074 HHHHH...HHHHHHHHHH CS LHC 3 kiWelvdPhrglvallgf 20 ++W+l+ P++++ ++ ++ T379782_2 268 RLWLLLSPRGTISLGITG 285 79*********9988765 PP == domain 6 score: -2.9 bits; conditional E-value: 1.4 HHHH...HHH.HHHHHHH CS LHC 4 iWelvdPhrg.lvallgf 20 +W+l+ +++ ++ ++g+ T379782_2 311 LWLLLSSRGTmFWGITGS 328 566655544314455555 PP == domain 7 score: 2.3 bits; conditional E-value: 0.033 HHHHH...HHHHHH CS LHC 3 kiWelvdPhrglva 16 ++W+l+ P++++ + T379782_2 371 RLWLLLSPRGTISW 384 79*******99765 PP == domain 8 score: -3.0 bits; conditional E-value: 1.5 HHHH...HHHHH CS LHC 4 iWelvdPhrglv 15 +W+l+ ++++ T379782_2 393 LWLLLSSRGIMF 404 677766666543 PP == domain 9 score: -1.0 bits; conditional E-value: 0.36 HHHHH...HHHHHHHHH CS LHC 3 kiWelvdPhrglvallg 19 ++W+ + P++++ ++ T379782_2 434 RLWLWLSPRGTISLGII 450 6899999**99988765 PP == domain 10 score: 1.0 bits; conditional E-value: 0.088 HHHHH...HHH CS LHC 3 kiWelvdPhrg 13 ++W+l+ P+++ T379782_2 476 RLWLLLSPRGT 486 79******987 PP >> MEF2_binding MEF2 binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.1 0.34 1.9e+03 2 6 .. 125 129 .. 124 134 .. 0.82 2 ? 4.0 0.3 0.0074 40 2 10 .. 146 154 .. 145 155 .. 0.94 3 ? 4.3 0.4 0.0061 33 2 10 .. 167 175 .. 166 177 .. 0.93 4 ? 4.0 0.3 0.0074 40 2 10 .. 272 280 .. 271 281 .. 0.94 5 ? 1.5 0.0 0.044 2.4e+02 3 10 .. 334 341 .. 333 342 .. 0.94 6 ? 4.3 0.1 0.0063 34 2 10 .. 375 383 .. 374 384 .. 0.94 7 ? 1.5 0.0 0.044 2.4e+02 3 10 .. 439 446 .. 438 447 .. 0.94 8 ? 1.0 0.1 0.065 3.5e+02 2 9 .. 480 487 .] 479 487 .] 0.92 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.34 MEF2_binding 2 LLSPK 6 LLSPK T379782_2 125 LLSPK 129 9***9 PP == domain 2 score: 4.0 bits; conditional E-value: 0.0074 MEF2_binding 2 LLSPKGSIS 10 LLSP+G IS T379782_2 146 LLSPRGTIS 154 9*******9 PP == domain 3 score: 4.3 bits; conditional E-value: 0.0061 MEF2_binding 2 LLSPKGSIS 10 LLSP+G IS T379782_2 167 LLSPRGTIS 175 9*******9 PP == domain 4 score: 4.0 bits; conditional E-value: 0.0074 MEF2_binding 2 LLSPKGSIS 10 LLSP+G IS T379782_2 272 LLSPRGTIS 280 9*******9 PP == domain 5 score: 1.5 bits; conditional E-value: 0.044 MEF2_binding 3 LSPKGSIS 10 LSP+G IS T379782_2 334 LSPRGTIS 341 9******9 PP == domain 6 score: 4.3 bits; conditional E-value: 0.0063 MEF2_binding 2 LLSPKGSIS 10 LLSP+G IS T379782_2 375 LLSPRGTIS 383 9*******9 PP == domain 7 score: 1.5 bits; conditional E-value: 0.044 MEF2_binding 3 LSPKGSIS 10 LSP+G IS T379782_2 439 LSPRGTIS 446 9******9 PP == domain 8 score: 1.0 bits; conditional E-value: 0.065 MEF2_binding 2 LLSPKGSI 9 LLSP+G I T379782_2 480 LLSPRGTI 487 9*****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 2786.45 // Query: T379782_3 [L=487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2843.31 // Query: T006601_1 [L=365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2175.42 // Query: T006601_2 [L=365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 2221.71 // Query: T006601_3 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 2215.62 // Query: T085989_1 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4845.90 // Query: T085989_2 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4655.86 // Query: T085989_3 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 4235.05 // Query: T008085_1 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 256 (0.0156997); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 3814.44 // Query: T008085_2 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.37 10.9 34.7 0.55 10.4 34.7 1.1 1 PTPRCAP Protein tyrosine phosphatase receptor type C-associ 0.8 7.8 24.7 1 7.4 24.7 1.1 1 CDC45 CDC45-like protein 3.3 6.9 35.3 4.7 6.4 35.3 1.1 1 SDA1 SDA1 Domain annotation for each model (and alignments): >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 34.7 0.0001 0.55 39 124 .. 65 148 .. 37 161 .. 0.63 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.0001 PTPRCAP 39 edgeedeeeEdqedeedeeedsedle.ggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedaegeasggsaeaLLsdLha 124 e++eed eeE++e+ee+eee++ e ++eee+e++eee++e+ee +ee+ +e++ee +eek++k++a + ++g ++++Ls L+ T008085_2 65 EEKEEDGEEEKEEEEEEEEEEE---E*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKKKACARETEGLGDVMLSALKM 148 5666666666666666655543...2222222222333333333333344444445555557778878888899**********996 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 24.7 0.00019 1 118 194 .. 73 141 .. 64 193 .. 0.31 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00019 CDC45 118 eereayealeeeeesdedd.........eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse.........p 194 ee+e e+ eeee + eeeee+++eeeeeeeee+eeeeee++ee+k+k+k k+ T008085_2 73 EEKE-EEEEEEEE-----Eee*eeeeeeEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKK-KA-------------------CareteglgdV 141 1111.11111111.....11222111111111111111111111111111111111111111.11...................11223334431 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 35.3 0.00086 4.7 103 179 .. 70 129 .. 53 174 .. 0.36 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00086 SDA1 103 dwevesdddseedseggwidvesdee.ieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekekv 179 d e e+ e++ + e++ee +ee++e+e+eeeeee eeeeeeeeeeeeeeee eeekek+k+ T008085_2 70 DGEEEK--------EEEEEEEEEEEE*EEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEGEEEKEKKKK 129 011110........0000000111112111111111111111..........11111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1287 (0.078928); expected 326.1 (0.02) Passed bias filter: 444 (0.0272292); expected 326.1 (0.02) Passed Vit filter: 181 (0.0111002); expected 16.3 (0.001) Passed Fwd filter: 64 (0.00392494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.71 # Mc/sec: 3545.82 // Query: T008085_3 [L=879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.9 4.2 0.0016 18.5 4.2 1.1 1 DDHD DDHD domain ------ inclusion threshold ------ 0.084 13.2 16.1 0.13 12.6 16.1 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.21 11.5 7.2 0.29 11.0 7.2 1.1 1 RP-C_C Replication protein C C-terminal region 0.22 10.1 27.1 0.32 9.6 27.1 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tr 0.31 11.4 8.7 0.62 10.4 8.7 1.4 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle t Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 4.2 5e-07 0.0016 120 184 .. 64 128 .. 31 209 .. 0.62 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 5e-07 DDHD 120 lnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee 184 +++ +k++++++++ ++++k+++++++++k+++++k+++++++++++k++++++k+e ++k+ ++ T008085_3 64 WKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRR 128 33333333333333333333333333333333332222222222222222222211111111111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 16.1 4e-05 0.13 26 77 .. 72 123 .. 20 138 .. 0.52 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4e-05 RNA_pol_Rpc4 26 dkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaakl 77 +k+++ ++++k+k++++++++k++++++++kk+kkk++kkkkkkk+k++k+ T008085_3 72 KKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKK 123 1222222222222222222222222222222222222222222222222211 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 7.2 8.9e-05 0.29 37 100 .. 58 134 .. 55 182 .. 0.66 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 8.9e-05 RP-C_C 37 eevenaleaklkaenssanesqnerhiqnsnpesssesepasekereekeaaaasaeaepsek.............k 100 +++ n++++k+k e+++++ ++++++++s+++ +++++++++k++++k++++++++++++++ k T008085_3 58 TRILNRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEkkkkkrrrkhvreK 134 67889999999999999999999999999999655554433333333322222222222222223334444444443 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 27.1 9.7e-05 0.32 42 112 .. 62 132 .. 52 163 .. 0.51 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 9.7e-05 NPR3 42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 +w+k+kk +kk+k++r++++k+kksk+++kk+ +++k++++++kk++k+++++++k++++++k+ +++ T008085_3 62 NRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVR 132 68999977654444444444444444444443333333333333333332222222222222222222222 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 8.7 0.00019 0.62 60 102 .. 79 121 .. 19 143 .. 0.53 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00019 Afi1 60 eeeeleeeekknklekrkkkksededdvdeedeeeeddnedld 102 +++++++++kk++++krkkkk++++++ +++++++++++++++ T008085_3 79 KKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEK 121 1111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3232 (0.198209); expected 326.1 (0.02) Passed bias filter: 1030 (0.0631669); expected 326.1 (0.02) Passed Vit filter: 628 (0.0385134); expected 16.3 (0.001) Passed Fwd filter: 120 (0.00735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.21u 0.43s 00:00:02.64 Elapsed: 00:00:00.79 # Mc/sec: 3183.13 // Query: T023856_1 [L=853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-14 53.8 0.0 2.8e-14 53.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.2 0.0 1.7e-18 2.8e-14 2 118 .. 211 324 .. 210 325 .. 0.94 Alignments for each domain: == domain 1 score: 53.2 bits; conditional E-value: 1.7e-18 rve 2 trpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 ++p +wqvD+ +++ ++++++++l+ id++ ++ +a++ + +a+t+i+ l + + + +g p + sD+ + +ka+ ++ + +gi +s++ p+ T023856_1 211 NQPATWWQVDYIgPLP--SWKSQSFVLTGIDTYLGYGFAYPACNA-SAKTTIRGLMKCLTHHHGI-PNSIASDQRIHFMAKAVWQWSRAHGIYWSYHIPH 306 5899********7777..77778**********************.9999999999999999998.********************************** PP rve 101 rpqdnGkvErfnrtlkde 118 +p+ G++E n++lk + T023856_1 307 HPEAAGLIEWWNGLLKSQ 324 ***************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 3486.13 // Query: T023856_2 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 3693.07 // Query: T023856_3 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-14 52.0 0.0 7.4e-14 51.4 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.4 0.0 4.5e-18 7.4e-14 7 106 .. 392 491 .. 387 510 .. 0.92 Alignments for each domain: == domain 1 score: 51.4 bits; conditional E-value: 4.5e-18 BESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC CS dUTPase 7 trkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt 106 + + sAg+++ ++ t++pg+t ++p+++++ lp + +l+lp S a+kg++v+ gvid dy+ e+++ l+n +k++ ++gd + +L++ ++ T023856_3 392 VPMTLHSAGLEVLVPGGGTLPPGDTRMIPLNRKLRLPPRHFGLLLPLSQQAKKGVTVLAGVIDPDYQDEISILLYNGGKEEYAWNTGDPLGHLLVLPCPM 491 5667789****************************************************************************************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 3868.93 // Query: T167033_1 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 4009.63 // Query: T167033_2 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.72 # Mc/sec: 3564.12 // Query: T167033_3 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 4134.36 // Query: T359276_1 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 3734.68 // Query: T359276_2 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3875.61 // Query: T359276_3 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 3476.64 // Query: T051173_1 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3098.33 // Query: T051173_2 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3157.92 // Query: T051173_3 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 2880.91 // Query: T156441_1 [L=3854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.42s 00:00:01.84 Elapsed: 00:00:00.76 # Mc/sec: 14507.42 // Query: T156441_2 [L=3854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.68 # Mc/sec: 16214.17 // Query: T156441_3 [L=3854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.78 # Mc/sec: 14135.43 // Query: T300735_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-09 36.5 0.7 7.5e-09 35.4 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.2e-06 27.5 4.4 5.1e-06 26.4 4.4 1.5 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.4 0.7 9.2e-13 7.5e-09 2 62 .. 537 598 .. 536 601 .. 0.86 Alignments for each domain: == domain 1 score: 35.4 bits; conditional E-value: 9.2e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300735_1 537 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 598 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 4.4 6.2e-10 5.1e-06 10 82 .. 452 524 .. 439 531 .. 0.54 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 6.2e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300735_1 452 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 524 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.76 # Mc/sec: 3926.11 // Query: T300735_2 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 4516.64 // Query: T300735_3 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.5 5.1 0.027 14.4 5.1 1.6 1 Mucin-like Mucin-like 6.8 5.7 8.3 10 5.0 8.3 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 5.1 3.3e-06 0.027 7 87 .. 359 439 .. 350 443 .. 0.85 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.3e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300735_3 359 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 439 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 8.3 0.0013 10 242 305 .. 381 439 .. 354 454 .. 0.62 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0013 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300735_3 381 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 439 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 4383.80 // Query: T227245_1 [L=3875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.80 # Mc/sec: 13857.15 // Query: T227245_2 [L=3874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.46s 00:00:01.97 Elapsed: 00:00:00.86 # Mc/sec: 12887.04 // Query: T227245_3 [L=3874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 18.0 1.6 0.0056 17.1 1.6 1.5 1 DUF1117 Protein of unknown function (DUF1117) Domain annotation for each model (and alignments): >> DUF1117 Protein of unknown function (DUF1117) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 1.6 3.4e-07 0.0056 2 29 .. 3145 3172 .. 3144 3247 .. 0.80 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 3.4e-07 DUF1117 2 GltiWRLPGGGfAvGRfsggrregerel 29 Glt+WR+PGGG vG g+r + r l T227245_3 3145 GLTVWRVPGGGAGVGQRDGARGKTSRSL 3172 9********************9999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.50u 0.34s 00:00:01.84 Elapsed: 00:00:00.75 # Mc/sec: 14777.14 // Query: T209593_1 [L=2053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 9628.33 // Query: T209593_2 [L=2053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 9177.01 // Query: T209593_3 [L=2053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 8390.41 // Query: T052011_1 [L=3219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 14389.08 // Query: T052011_2 [L=3218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.77 # Mc/sec: 11956.04 // Query: T052011_3 [L=3218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 12786.32 // Query: T221039_1 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7040.13 // Query: T221039_2 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 7473.37 // Query: T221039_3 [L=1697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 7355.80 // Query: T367965_1 [L=3004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:00.70 # Mc/sec: 12277.05 // Query: T367965_2 [L=3004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.68 # Mc/sec: 12638.14 // Query: T367965_3 [L=3004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.44s 00:00:01.66 Elapsed: 00:00:00.73 # Mc/sec: 11772.51 // Query: T006195_1 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.75 # Mc/sec: 6873.62 // Query: T006195_2 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 7360.51 // Query: T006195_3 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 7156.05 // Query: T169582_1 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 602 (0.0369189); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.66 # Mc/sec: 1365.40 // Query: T169582_2 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1575.97 // Query: T169582_3 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 1448.87 // Query: T300284_1 [L=255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00068 19.5 3.8 0.00094 19.0 3.8 1.2 1 DUF3915 Protein of unknown function (DUF3915) ------ inclusion threshold ------ 0.3 9.2 11.9 0.39 8.8 11.9 1.0 1 Atrophin-1 Atrophin-1 family 0.54 10.7 15.6 0.75 10.2 15.6 1.1 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 3.8 1.7e-07 0.00094 4 43 .. 19 60 .. 16 72 .. 0.61 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.7e-07 DUF3915 4 sfgcredfrechrghc..cdrdrerererederekerekkke 43 sfg + + +rg+ +r+rer+rere+ere+ere+ ++ T300284_1 19 SFGSASEGDRGKRGRGrpWQRERERQRERERERERERERAPQ 60 677766665555555500556666666666666666666655 PP >> Atrophin-1 Atrophin-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 11.9 7.1e-05 0.39 601 621 .. 38 58 .. 23 67 .. 0.58 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 7.1e-05 Atrophin-1 601 ekerekererererereaera 621 ++ere++rerererere era T300284_1 38 QRERERQRERERERERERERA 58 344444444444444444444 PP >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 15.6 0.00014 0.75 58 96 .. 24 57 .. 14 60 .. 0.40 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00014 PRP38_assoc 58 rererrsrstprdrdrardRdrrrskrsreRdrsrsrdr 96 e++r +r++ r r+r+R+ r+reR+r+r+r+r T300284_1 24 SEGDRGKRGRGRPWQRERERQ-----RERERERERERER 57 333333333113333333333.....3333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 302 (0.0185208); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 1459.02 // Query: T300284_2 [L=255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.9 6.0 12.3 5.1 5.7 12.3 1.1 1 API5 Apoptosis inhibitory protein 5 (API5) 8.7 6.8 14.4 15 6.1 14.4 1.3 1 FoP_duplication C-terminal duplication domain of Friend of P Domain annotation for each model (and alignments): >> API5 Apoptosis inhibitory protein 5 (API5) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 12.3 0.00063 5.1 478 517 .. 12 53 .. 4 57 .. 0.59 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00063 API5 478 r.qqyvppsgklsnkanessgkgrgsgsrgrgrg.gggrGrG 517 r qqy+p s + ++ e++g+g rgrgrg g+grGrG T300284_2 12 RwQQYSPASARHQRETVEREGEGDRGRGRGRGRGrGRGRGRG 53 33999**99999999888555444434455555334444444 PP >> FoP_duplication C-terminal duplication domain of Friend of PRMT1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 14.4 0.0018 15 8 39 .. 30 56 .. 18 63 .. 0.40 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0018 FoP_duplication 8 rrggggrggrrgrgrggrggrggrgrgrggrg 39 r+g+g rg++rg rg+++grgrgrg+++ T300284_2 30 REGEGDRGRGRG-----RGRGRGRGRGRGRGR 56 122222222222.....222333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 1157.95 // Query: T300284_3 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 1274.83 // Query: T323513_1 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0045 16.8 5.5 0.0047 16.8 5.5 1.2 1 SPX SPX domain ------ inclusion threshold ------ 2.2 7.4 10.3 3.2 6.9 10.3 1.1 1 FAM76 FAM76 protein Domain annotation for each model (and alignments): >> SPX SPX domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 5.5 5.8e-07 0.0047 83 159 .. 220 290 .. 8 307 .. 0.74 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 5.8e-07 SPX 83 sssepkdeae..slprrsplsrssrssssygglvssppsansssssddssessssssssssesessssssssllrrlfs 159 s+s+p+++++ ++++++++++ ++++++ g+ +++++++++ ++++s++s +++s+ssssss+ ++l s T323513_1 220 SQSSPSSSLSpkHHHHHQHHHHHHSHHHHQGHHHHHQHHHHHHRHHPPSPPS--------ISQSSPSSSSSSSPSSLSS 290 2222222211112333333323333333333333333333333333333322........3333333333333333322 PP >> FAM76 FAM76 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 10.3 0.00039 3.2 147 218 .. 231 297 .. 216 318 .. 0.35 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00039 FAM76 147 skskkkkskskkskkskekskekkaskkkskkhkkrssrlevskleeeklaeekesnetskksldsnssdhl 218 +++++++++++++++++++ ++++++++++++ ++ +s ++s+ + +++s+++ ++ +s ss + T323513_1 231 KHHHHHQHHHHHHSHHHHQGHHHHHQHHHHHHRHHPPSPPSISQSS---P--SSSSSSSPSSLSSSPSSSSV 297 2222222222222222222222222222222222222222222222...1..11111111122222333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1614 (0.098982); expected 326.1 (0.02) Passed bias filter: 308 (0.0188888); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 2040.10 // Query: T323513_2 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1068 (0.0654974); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 2007.20 // Query: T323513_3 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00062 20.6 7.7 0.0012 19.7 3.8 2.3 2 DUF4834 Domain of unknown function (DUF4834) 0.0027 17.0 0.1 0.073 12.4 0.0 2.1 2 DUF1510 Protein of unknown function (DUF1510) 0.0058 16.8 14.0 0.039 14.1 5.1 2.2 2 Shisa Wnt and FGF inhibitory regulator 0.008 14.0 9.1 0.011 13.5 9.1 1.1 1 V_ATPase_I V-type ATPase 116kDa subunit family ------ inclusion threshold ------ 0.023 14.4 0.7 0.023 14.4 0.7 2.3 2 Tmemb_9 TMEM9 0.025 14.7 4.2 0.025 14.7 4.2 2.4 2 Sigma_reg_N Sigma factor regulator N-terminal 0.033 14.8 11.7 4.5 8.0 12.0 3.1 2 EphA2_TM Ephrin type-A receptor 2 transmembrane domai 0.06 13.3 0.2 0.06 13.3 0.2 2.0 2 Peptidase_S49_N Peptidase family S49 N-terminal 0.96 9.3 3.9 0.59 10.0 0.1 2.1 2 DUF4446 Protein of unknown function (DUF4446) 9.1 6.4 9.0 8 6.6 0.8 2.4 2 DUF2749 Protein of unknown function (DUF2749) Domain annotation for each model (and alignments): >> DUF4834 Domain of unknown function (DUF4834) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.1 0.16 2.5e+02 14 55 .. 213 253 .. 198 271 .. 0.43 2 ! 19.7 3.8 7.2e-07 0.0012 6 77 .. 274 345 .. 264 363 .. 0.47 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.16 DUF4834 14 ilviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqq 55 i +i ++ + +++ t+ + s +s +s ++q++ s +s+ + T323513_3 213 INIITIITVITVIITIT-KASSPPSASSPSSQSSPSSGSSPS 253 23333333333333331.222222223333444444444333 PP == domain 2 score: 19.7 bits; conditional E-value: 7.2e-07 DUF4834 6 fi.lifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqktqsrsstkeegeiieeersek 77 +i +i+ii+i +i ++i i+ +g++++ ++++++q+++++n+++++ +++++ ++ + ++++++++ T323513_3 274 VItIIIIIIITIITVIITIIIISHHHHKGHHHQHQHHHHHQHHHHYNQHHHHIHHHHQYHH-SHYHHHHHHHH 345 3433444444444444444444444455666655555555555555555444433332222.22222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.2 0.051 83 13 41 .. 210 232 .. 200 258 .. 0.44 2 ! 12.4 0.0 4.5e-05 0.073 17 71 .. 275 329 .. 268 363 .. 0.40 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.051 DUF1510 13 nkvLniligivlllivivaaslfigsksd 41 n +ni+ +i +++++i + + + T323513_3 210 NTTINIITIITVITVIITITKA------S 232 2333333333333332222222......2 PP == domain 2 score: 12.4 bits; conditional E-value: 4.5e-05 DUF1510 17 niligivlllivivaaslfigsksdeeekasddeeeeseeedkdekkeeseenee 71 ++i+i++++i+ v ++++i s+++++ ++++++++++++++++ ++ ++ +++ T323513_3 275 ITIIIIIIITIITVIITIIIISHHHHKGHHHQHQHHHHHQHHHHYNQHHHHIHHH 329 3344445555555555555555554433333333333333333322222222222 PP >> Shisa Wnt and FGF inhibitory regulator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 5.2 0.0022 3.5 75 137 .. 183 249 .. 146 269 .. 0.59 2 ! 14.1 5.1 2.4e-05 0.039 59 154 .. 247 336 .. 237 370 .. 0.37 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0022 Shisa 75 alevpkd..........iyvpvlivktifivfvivgvvvivcccgclkkkqrekrpgrenlssalaevgpivt 137 +++vpk i+ + i t+ + +i++++vi++ +++ +k ++ +++ ss ++ p T323513_3 183 EMKVPKTv*alrvtvltITNIINITITNTTINIITIITVITVIITI-TKASSPPSA-----SSPSSQSSPSSG 249 3334433777777777777888999********************9.666665552.....222222222222 PP == domain 2 score: 14.1 bits; conditional E-value: 2.4e-05 Shisa 59 eslktgreekekklgsalevpkd.iyvpvli.vktifivfvivgvvvivcccgclkkkqrekrpgrenlssalaevgpivtettsattvvhsrysepq 154 +s ++++ +++s+ p++ +++++ i v ti+i+++i++++vi+ + + + + + + ++++ +++ + h +y ++ T323513_3 247 SSGSSPS-----PSTSSPPSPSSsTITTINItVITIIIIIIITIITVIITIIIISHHHHKGHH---HQHQHHHHHQHHHHYNQHHHHIHHHHQYHHSH 336 2222222.....222222233223444554414677777777777777777666443333332...11111222221111112222222222221111 PP >> V_ATPase_I V-type ATPase 116kDa subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 9.1 6.9e-06 0.011 613 691 .. 276 355 .. 262 363 .. 0.30 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 6.9e-06 V_ATPase_I 613 lllalvcvpvlllvkPlilklkhkkk.kkkkekkkeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee 691 +++++ + ++ ++ +i+ +h++k ++++++++++++++++ ++++++ +++++ ++++ +++++++++++++ ++++ T323513_3 276 TIIIIIIITIITVIITIIIISHHHHKgHHHQHQHHHHHQHHHHYNQHHHHIHHHHQYHHSHYHHHHHHHHHHHHHCDHHH 355 23333333333333333333222222022222222222222221222222221222222222222222222222222222 PP >> Tmemb_9 TMEM9 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -8.2 9.5 10 1.6e+04 46 63 .. 210 227 .. 195 230 .. 0.71 2 ? 14.4 0.7 1.4e-05 0.023 47 107 .. 267 325 .. 261 360 .. 0.47 Alignments for each domain: == domain 1 score: -8.2 bits; conditional E-value: 10 Tmemb_9 46 ntttikvvviivivvisl 63 ntt+ +++i vi+vi + T323513_3 210 NTTINIITIITVITVIIT 227 566666667777777765 PP == domain 2 score: 14.4 bits; conditional E-value: 1.4e-05 Tmemb_9 47 tttikvvviivivvislLviYmlfLllldpllnkrkksasyqehsneedet.seslssasqs 107 +tti ++vi +i++i + ++ +++ ++++++++ + ++h++ ++++ ++++++++++ T323513_3 267 ITTINITVITIIIIIIIT---IITVIITIIIISHHHHKGHHHQHQHHHHHQhHHHYNQHHHH 325 345555554443333332...22333333334444333333333333322202222222222 PP >> Sigma_reg_N Sigma factor regulator N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 2.9 0.098 1.6e+02 11 34 .. 206 229 .. 201 243 .. 0.62 2 ? 14.7 4.2 1.6e-05 0.025 12 45 .. 269 305 .. 265 324 .. 0.59 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.098 Sigma_reg_N 11 silrivlislivlllifvilvvtl 34 +++++++i +i++++++ +++ ++ T323513_3 206 ITITNTTINIITIITVITVIITIT 229 355666666666555555554433 PP == domain 2 score: 14.7 bits; conditional E-value: 1.6e-05 Sigma_reg_N 12 ilrivlislivlllifvil.vvtllyl..aekegnkl 45 ++ i++i++i++++i++i+ ++t+ + ++++g+ + T323513_3 269 TINITVITIIIIIIITIITvIITIIIIshHHHKGHHH 305 6777777777777777777444444444422222222 PP >> EphA2_TM Ephrin type-A receptor 2 transmembrane domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 0.17 2.8e+02 9 35 .. 215 239 .. 206 261 .. 0.48 2 ? 8.0 12.0 0.0028 4.5 2 49 .. 275 322 .. 272 376 .. 0.61 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.17 EphA2_TM 9 lvllvilviivlvlvrrrsknrkqksd 35 +++ i+ +i+++++ ++++ ++s+ T323513_3 215 IIT--IITVITVIITITKASSPPSASS 239 222..2233333333334433333333 PP == domain 2 score: 8.0 bits; conditional E-value: 0.0028 EphA2_TM 2 iaaaiaglvllvilviivlvlvrrrsknrkqksdl......sseekkeeensgk 49 i+++i+ ++++++++i+++++ ++++k +++++++ + ++ +++ T323513_3 275 ITIIIIIIITIITVIITIIIISHHHHKGHHHQHQHhhhhqhH------HHYNQH 322 344444445555444444444444444444444443333331......222222 PP >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.3 0.48 7.8e+02 13 31 .. 215 229 .. 205 240 .. 0.56 2 ? 13.3 0.2 3.7e-05 0.06 12 85 .. 281 354 .. 269 379 .. 0.52 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.48 Peptidase_S49_N 13 lvtlvvailvvvvlivala 31 ++t++++i+v++++ + T323513_3 215 IITIITVITVIITI----T 229 44444444444433....2 PP == domain 2 score: 13.3 bits; conditional E-value: 3.7e-05 Peptidase_S49_N 12 klvtlvvailvvvvlivalaqkkk...kekgelevtkLnekykelkeelkealldeeelkalekeekkeekeekkae 85 ++t++++i++++++ ++++k +++++ + ++ +++y++ +++++++ +++ +++ +++++++++ ++ T323513_3 281 IIITIITVIITIIIIS---HHHHKghhHQHQHHHHHQHHHHYNQHHHHIHHHHQYHHSHYHHHHHHHHHHHHHCDHH 354 2333333333333222...2222222356666666777778888888887766554444444333333333332222 PP >> DUF4446 Protein of unknown function (DUF4446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.8 0.51 8.3e+02 7 23 .. 214 230 .. 205 236 .. 0.53 2 ? 10.0 0.1 0.00036 0.59 5 65 .. 276 337 .. 272 367 .. 0.44 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.51 DUF4446 7 lvlvvillillivllvk 23 ++++i++i++i++++k T323513_3 214 NIITIITVITVIITITK 230 34444444444444444 PP == domain 2 score: 10.0 bits; conditional E-value: 0.00036 DUF4446 5 vllvlvvillillivllvklkklkkkykklmkgk.dgksleellkekleeveelkeeneele 65 ++++++i++i++i++++ +++ ++k ++ ++++ ++++ ++ +++ +++++ ++ ++++ T323513_3 276 TIIIIIIITIITVIITIIIISHHHHKGHHHQHQHhHHHQHHHHYNQHHHHIHHHHQYHHSHY 337 44555555555555555555555444444433322333333333333333333333332222 PP >> DUF2749 Protein of unknown function (DUF2749) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 2.0 0.046 75 7 34 .. 215 241 .. 205 248 .. 0.48 2 ? 6.6 0.8 0.0049 8 6 27 .. 275 296 .. 271 315 .. 0.61 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.046 DUF2749 7 Ialvvavaavaatilwvvvqpd..pagapg 34 I+ ++ v++v+ ti+ + a++p+ T323513_3 215 IITIITVITVIITITKA---SSppSASSPS 241 44444444444444433...3321233333 PP == domain 2 score: 6.6 bits; conditional E-value: 0.0049 DUF2749 6 lIalvvavaavaatilwvvvqp 27 + ++++++++ +++i+ +++ + T323513_3 275 ITIIIIIIITIITVIITIIIIS 296 4444455555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2106 (0.129155); expected 326.1 (0.02) Passed bias filter: 477 (0.029253); expected 326.1 (0.02) Passed Vit filter: 123 (0.00754324); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:00.64 # Mc/sec: 1944.47 // Query: T228151_1 [L=463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.66 9.6 157.2 2.8 7.6 33.6 4.0 4 Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) Domain annotation for each model (and alignments): >> Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 33.6 0.00017 2.8 140 211 .. 75 148 .. 67 158 .. 0.40 2 ? 6.8 52.1 0.0003 4.9 114 215 .. 179 287 .. 157 292 .. 0.77 3 ? 5.3 49.6 0.00083 14 89 215 .. 275 402 .. 269 408 .. 0.75 4 ? 4.6 53.8 0.0014 22 79 214 .. 310 456 .. 309 463 .] 0.70 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00017 Plasmodium_HRP 140 yahh...ahhaadahhaadahhaadahhaadahhaadshtahhaadahhaadahhad.dahhdadahhaadahhaa 211 +hh +hh+ +hh++ + h++ +hh+ +hh+ t hh+ +hh+ +hh++ +hh+ +hh+ +h + T228151_1 75 TTHHsltTHHSLTTHHSSLTTHSSLTHHSPLTHHSPL--TTHHSLTTHHSLTTHHSSlTTHHSLITHHSLTTHSSL 148 3333333333333333333333344444433333333..3444444444444443321334434444444444333 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0003 Plasmodium_HRP 114 ahhaadahh....ahhaadahhaadahhaayahh....ahhaadahhaadahhaadahhaadahhaadshtahhaadahhaadahhaddahhda. 199 + h+ +hh +hh+ +hh+ +hh+ +hh +hh+ +h h +hh+ +hh+ t hh+ +hh+ +hh+ +hh++ T228151_1 179 TTHSPLTHHspltTHHSPLTHHSLTTHHSLTTHHssltTHHSLTTHSPLTHHSPLTTHHSLTTHHSSL--TTHHSLITHHSLTTHHSLTTHHSSl 271 45666677777767888888999999999998888776677777776555555568899999999877..9999999999999999999999886 PP Plasmodium_HRP 200 dahhaadahhaadahh 215 +hh+ +hh+ ++h T228151_1 272 TTHHSLITHHSLTTHS 287 8899999999999995 PP == domain 3 score: 5.3 bits; conditional E-value: 0.00083 Plasmodium_HRP 89 haadahhahhaadahhahhaadaahahhaadahh...ahhaadahhaadahhaayahh...ahhaadahhaadahhaadahhaadahhaadshta 177 h+ +hh+ +h + + + +h +hh +hh+ +hh+ +hh+ +h +hh++ + h++ +hh+ +hh+ h T228151_1 275 HSLI---THHSLTTHSSLTTHPSLITHSPLTTHH*ltTHHSLITHHSLTTHHSLTTHSsltTHHSSLTTHSSLTHHSPLTHHSPLITHYS--PLT 364 2222...46666666665556666678888999999999999999999999999999877788888888888888888888888877754..478 PP Plasmodium_HRP 178 hhaadahhaadahhaddahhdadahhaadahhaadahh 215 hh+ +h + +hh+ +hh+ +hh+ +hh+ + h T228151_1 365 HHSLTTHSSLTTHHSPLTHHSLTTHHSLTTHHSLLTTH 402 88888888888888888888888888888888765555 PP == domain 4 score: 4.6 bits; conditional E-value: 0.0014 Plasmodium_HRP 79 hhaadahhahhaadahhahhaadahhahhaadaahahhaadahh....ahhaadahhaadahhaayahh...ahhaadahhaadahhaadahhaa 166 hh +hh+ + ++ +h + +hh+ ++++ +hh+ +hh +h++ +hh+ +h + +hh +hh+ +hh+ +hh+ + h+ T228151_1 310 HHSLITHHSLTTHHSLTTHSSLTTHHSSLTTHSSLTHHSPLTHHspliTHYSPLTHHSLTTHSSLTTHHsplTHHSLTTHHSLTTHHSLLTTHSP 404 56655666544444445788888899888899999999999999888777777799999999999999988889999999999999998888887 PP Plasmodium_HRP 167 dahhaad.sh...tahhaadahhaadahhaddahhdadahhaadahhaadah 214 + h+ +h t h + +h + +h + +hh++ +hh+ +hh+ ++h T228151_1 405 LTTHSPLtTHsplTTHSSLTTHPSLITHSTLTTHHSSLTHHSLITHHSLTTH 456 7777644222111334444555555555556677777777777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 2069.63 // Query: T228151_2 [L=463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.085 12.5 122.9 2.5e+02 1.2 47.2 3.9 2 Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) Domain annotation for each model (and alignments): >> Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -31.3 95.5 1 1.6e+04 40 215 .. 125 355 .. 77 374 .. 0.39 2 ? 1.2 47.2 0.015 2.5e+02 120 209 .. 328 434 .. 310 461 .. 0.33 Alignments for each domain: == domain 1 score: -31.3 bits; conditional E-value: 1 Plasmodium_HRP 40 lnsnkrllheaqa...haadahh...ahhaadahh.........ahhaadahha...hhaadahha....hhaadahh...ahhaadahhahhaa 109 l++ + ll + h+ +hh +hh++ +hh +hh+ +hh+ hh +hh+ hh+ +h +h +hh+ ++ T228151_2 125 LTTHHSLLTTHSSlttHSPLTHHsplTHHSSLTHHsplthhsplTHHSPLTHHSpltHHSLITHHSplitHHSLITHSpltTHSPLTTHHSLLTT 219 22222221111111122222222111233333333333222444444444444222244444454222224444444222134445555555555 PP Plasmodium_HRP 110 daahahhaadahh....ahhaadahhaadahhaayahh....ahhaadahhaad............ahhaadahhaadahhaad..........s 174 ++ +hh+ +hh +h +hh+ + h++ + h +h +hh+ +hh+ +hh++ +hh+ s T228151_2 220 HSPLTHHSLITHHspltTHSPLTTHHSLLTTHSSLTTHspltTHSPLTTHHSLLtthssltthsplTHHSPLTHHSSLTHHSPLttdspltthsS 314 55555666666665554333333444444333333333333322222333322233333344444455555555555555543334444443331 PP Plasmodium_HRP 175 htahhaadahhaadahhaddahhdadahhaadahhaadahh 215 t h +h +h +hh+ +hh+ +hh+ ++hh T228151_2 315 LTTHSPLTTHSPLTHHSPLTTHHSPLTHHSLTTHHSLTTHH 355 12222222222222222233444444444444444444444 PP == domain 2 score: 1.2 bits; conditional E-value: 0.015 Plasmodium_HRP 120 ahh....ahhaadahhaadahhaayahh.........ahhaadahhaad.ahhaadahhaadahhaad...shtahhaadahhaadahhaddahh 197 +hh +hh+ +hh+ +hh+ +hh + h+ +hh+ +hh+ +h +h s hh+ +hh+ +hh+ +hh T228151_2 328 THHspltTHHSPLTHHSLTTHHSLTTHHssltthhslTTHSPLTHHSPLiTHHSLITHSPLTTHSPLTthySPLTHHSPLTHHSPLTHHSPLTHH 422 22222222333333333333333333332222001222222222332221222222222222222222111112233333333333333333333 PP Plasmodium_HRP 198 dadahhaadahh 209 + +hh++ + h T228151_2 423 SPLTHHSSLTQH 434 333333332222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 1919.66 // Query: T228151_3 [L=463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-06 25.9 156.7 0.14 11.8 46.3 4.0 4 Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) Domain annotation for each model (and alignments): >> Plasmodium_HRP Plasmodium histidine-rich protein (HRPII/III) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 29.6 0.00015 2.5 119 215 .. 63 161 .. 52 164 .. 0.71 2 ! 6.2 53.3 0.00043 7 96 215 .. 135 265 .. 130 267 .. 0.79 3 ! 3.1 67.8 0.0039 63 66 214 .. 220 392 .. 207 393 .. 0.56 4 ! 11.8 46.3 8.3e-06 0.14 98 214 .. 339 459 .. 336 462 .. 0.57 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00015 Plasmodium_HRP 119 dahhahhaadahhaadahhaayahh....ahhaadahhaadahhaadahhaadahhaadshtahhaa.dahhaadahhaddahhdadahhaadah 208 a h + +hh+ +hh+ +hh +hh+ +h +h +h++ +hh+ hh+ +h++ +hh+ +hh+ +hh+ +h T228151_3 63 LAFRFTHHSLTHHSPLTHHSPLTHHspliTHHSLITHSPLTTHSPLTTHYSPLTHHSPL---THHSPlITHYSPLTHHSPLTHHSLITHHSPITH 154 45554555667888888888888887777788888888888888888888888888776...444432677777778878888888888888888 PP Plasmodium_HRP 209 haadahh 215 h+ ++hh T228151_3 155 HSLTTHH 161 8888887 PP == domain 2 score: 6.2 bits; conditional E-value: 0.00043 Plasmodium_HRP 96 ahhaadahhahhaadaahahhaadahh...ahhaadahhaadahhaayahh...ahhaadahhaadahhaadahhaadahhaadshtahhaadah 184 +hh+ +hh+ + ++ +hh+ +hh +hh+ +hh+ +hh+ +h +hh++ + h++ +hh+ +hh+ h hh+ +h T228151_3 135 THHSPLTHHSLITHHSPITHHSLTTHH*ltTHHSLITHHSLTTHHSLTTHSsltTHHSSLTTHSSLTHHSPLTHHSPLITHYSP--LTHHSLTTH 227 5888888888888888889**********99****************999888899***9999999*********998888544..666666666 PP Plasmodium_HRP 185 haadahhaddahhda.......dahhaadahhaadahh 215 + +hh+ +hh+ +hh+ +hh+ +hh T228151_3 228 SSLTTHHSPLTHHSPlithyspLTHHSPLTHHSPLTHH 265 66666666666665554444447788877888888887 PP == domain 3 score: 3.1 bits; conditional E-value: 0.0039 Plasmodium_HRP 66 ahhahhaadahhahhaadahha....hhaadahh...ahhaadahhahh.aadaahahhaadahh...ahhaadahhaadahhaayahh...ahh 146 +hh+ + + +hh +hh+ h++ +hh +hh+ +hh+ + ++ +hh+ +hh +hh+ +hh+ +hh+ +hh +hh T228151_3 220 THHSLTTHSSLTTHHSPLTHHSplitHYSPLTHHsplTHHSPLTHHSPLiTHYSPLTHHSPLTHHsliTHHSPITHHSLTTHHSPLTHHsplTHH 314 33322222223345555555532222444444442225777777776541346667888888888887788888888888888888888887788 PP Plasmodium_HRP 147 aadahhaadahhaadahhaad.ahhaad.........shtahhaadahhaadahhaddahhdadahhaadahhaadah 214 + +hh+ +hh+ +hh+ +hh+ t hh+ + h+ +hh+ +hh++ + h++ +hh+ +h T228151_3 315 SPLTHHSPLTHHSLITHHSPLiTHHSLIthspltthsPLTTHHSLLTTHSPLTHHSLITHHSSLTTHSSLTHHSPLTH 392 888888888888888888764156665533333322222445555555555555555555555555555555555555 PP == domain 4 score: 11.8 bits; conditional E-value: 8.3e-06 Plasmodium_HRP 98 haadahhahhaadaahahhaadahh...ahhaadahhaadahhaayahh...ahhaa.dahhaadahhaadahhaadahhaadshtahhaadahh 185 h+ +h + +hh+ + h +hh+ +hh++ + h++ +hh +hh+ +hh+ +hh+ +hh+ +hh+ hh+ +hh T228151_3 339 HSLITHSPLTTHSPLTTHHSLLTTHsplTHHSLITHHSSLTTHSSLTHHsplTHHSPlTTHHSLTTHHSLTTHHSLTTHHSLI---THHSPITHH 430 33333333333333344444444444445666666666666666666665554554324566666666666666666666655...677777777 PP Plasmodium_HRP 186 aadahhaddahhdadahhaadahhaadah 214 + ++hh+ h+ +hh+ +hh+ ++h T228151_3 431 SLNTHHSPLITHSPLTHHSPLTHHSLTTH 459 77777777777777888888888887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 2006.92 // Query: T276836_1 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 490 (0.0300503); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 1540.08 // Query: T276836_2 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 685 (0.0420091); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 1443.83 // Query: T276836_3 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 693 (0.0424997); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 1379.18 // Query: T111968_1 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 2016.65 // Query: T111968_2 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.68 # Mc/sec: 1809.05 // Query: T111968_3 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.62 # Mc/sec: 1984.12 // Query: T035305_1 [L=1004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 4162.71 // Query: T035305_2 [L=1004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 3934.62 // Query: T035305_3 [L=1004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 4632.70 // Query: T246243_1 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6354.34 // Query: T246243_2 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 7.6 5.5 6.3 6.5 5.5 1.5 1 CCDC24 Coiled-coil domain-containing protein 24 family Domain annotation for each model (and alignments): >> CCDC24 Coiled-coil domain-containing protein 24 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 5.5 0.00039 6.3 88 138 .. 810 866 .. 789 880 .. 0.49 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00039 CCDC24 88 rsrrvldYvl...daaaersareespssrPesassks...taasaasgsssasalss 138 ++++ +d++ ++++++++ +s ss+++s+s +s +asa+s+sss+s++ss T246243_2 810 QQPQAIDWLFyvkKNNSQPQSLLPSTSSSTSSSSTTSsssSVASASSDSSSSSSSSS 866 555555555533344455544444444444444444433333444444443333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 896 (0.0549491); expected 326.1 (0.02) Passed bias filter: 319 (0.0195634); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.75 # Mc/sec: 4405.68 // Query: T246243_3 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.77 # Mc/sec: 4287.53 // Query: T099740_1 [L=3080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.70 # Mc/sec: 12587.65 // Query: T099740_2 [L=3079] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3079 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.77 # Mc/sec: 11439.60 // Query: T099740_3 [L=3079] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3079 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1567 (0.0960996); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 133 (0.00815651); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.16u 0.57s 00:00:03.73 Elapsed: 00:00:00.95 # Mc/sec: 9272.10 // Query: T215495_1 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 3723.35 // Query: T215495_2 [L=871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 3719.08 // Query: T215495_3 [L=871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 4223.36 // Query: T189405_1 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00057 19.3 0.0 0.00082 18.8 0.0 1.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 5e-08 0.00082 131 222 .] 1199 1285 .. 1191 1285 .. 0.95 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 5e-08 B--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 131 glpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 l G+++SP++f ++ + l+++ +r g++ll+Y+ +l+ + + + +++ ++l+++g+k++++ + + ++v+yLG+t+ T189405_1 1199 HLEYGFKNSPTIFGEALAQDLQKFPTRDLGCVLLQYVNNLLLGHPTAVGCAMRKDTLIQHLEDCGYKVSKKRAQNC-----IQQVRYLGFTI 1285 5778************************************************************************.....6********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 8762.21 // Query: T189405_2 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-05 25.5 0.0 1.8e-05 24.8 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 1.1e-09 1.8e-05 3 80 .. 1795 1868 .. 1793 1879 .. 0.84 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 1.1e-09 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggveper.vlsDngseyts 80 +p e +qvD+t+++ + gg++yllv + ++s+++ a+ +++e +a +++++l r + ++g + sDn +++++ T189405_2 1795 APFEDLQVDFTEMP--KCGGNKYLLVLVSTYSGWMEAYLTRTE-KAREITDVLLRDLIPRFGLP--L*IGSDNRPAFVA 1868 689999********..9999***********************.**********9999999963..3335666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.44s 00:00:01.79 Elapsed: 00:00:00.84 # Mc/sec: 8132.93 // Query: T189405_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-05 24.1 0.0 4.9e-05 23.4 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 3e-09 4.9e-05 6 78 .. 1534 1606 .. 1531 1617 .. 0.78 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 3e-09 EEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEH.HHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHH CS RNase_H 6 vYtDGsclgn.sgeggaga.vlykegarnisapleeaqt.nnraELsAvieaLk.alksdekvniytDSkYvvkgit 78 +Y D s+ n +ge++ag+ v+ + a +++l+ + t + +a L+A+i a + + ++++vniytDS+Y++ +++ T189405_3 1534 LYRDRSSCVNpPGERCAGYaVVTLD-AVVEAKSLP-KGT*AKKAKLIALIRASElS--EGKTVNIYTDSRYAFLTLQ 1606 788877666669*******766766.345556666.899*************8844..9************987554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.75 # Mc/sec: 9108.88 // Query: T126171_1 [L=1562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 7979.67 // Query: T126171_2 [L=1562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 7704.51 // Query: T126171_3 [L=1561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 7699.58 // Query: T210854_1 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 9248.37 // Query: T210854_2 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 9091.62 // Query: T210854_3 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.59 # Mc/sec: 9091.62 // Query: T201391_1 [L=6302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:00.67 # Mc/sec: 26908.88 // Query: T201391_2 [L=6301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.32s 00:00:01.76 Elapsed: 00:00:00.69 # Mc/sec: 26124.77 // Query: T201391_3 [L=6301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.34s 00:00:01.82 Elapsed: 00:00:00.69 # Mc/sec: 26124.77 // Query: T037596_1 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-53 179.0 4.5 5.9e-44 150.0 1.7 2.2 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.0 1.7 3.6e-48 5.9e-44 2 193 .. 110 302 .. 109 306 .. 0.89 2 ! 29.7 0.1 2.3e-11 3.8e-07 118 163 .. 948 993 .. 947 996 .. 0.93 Alignments for each domain: == domain 1 score: 150.0 bits; conditional E-value: 3.6e-48 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeaf.pltrpdwdyetae 100 y pf+++dl nw +n ps e+pq+l l+++++ th+ tw dc qll l+ +erqrvl a k ++ + p++ +n + + + r d + + e T037596_1 110 YQPFTSADLLNWENNTPSQKEKPQALIDLLQTVIQTHNHTWADCHQLLMFLFNRDERQRVLQAATKWLEEH--APADYQNPQEYGRtQVPRTDHQLDPHE 207 89****************************************************************99765..566666655555314566677766666 PP Gag_p30 101 greslkly..rqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqea 193 + +l r++ll gl a++ tn+ kv ev+q keespa + erl eay +ytp dp++pe++ + +++i+qsa d+r+klq+ gl ++ T037596_1 208 REDMQRLN*gREALLEGLMRGAQKATNVNKVSEVIQEKEESPAQLYERLCEAYHMYTPLDPDNPENQRMIHMALIHQSAEDLRRKLQKQAGLAGV 302 5566677566******************************************************************************9998765 PP == domain 2 score: 29.7 bits; conditional E-value: 2.3e-11 Gag_p30 118 gaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpe 163 g rrp l++ ++ + keespa + erl +ay +ytp+dp++pe T037596_1 948 GELRRPQTLTRSLRLFREKEESPAQLYERLCKAYHMYTPFDPDSPE 993 5679***************************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 293 (0.0179688); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 4868.03 // Query: T037596_2 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-13 49.7 0.0 5.6e-13 48.9 0.0 1.4 1 RVP Retroviral aspartyl protease 0.0061 17.1 0.0 0.011 16.3 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.0065 16.9 0.0 0.011 16.1 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.9 0.0 1e-16 5.6e-13 3 100 .. 429 521 .. 428 522 .. 0.96 Alignments for each domain: == domain 1 score: 48.9 bits; conditional E-value: 1e-16 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++Pl+++ +gg+ i + +DtGA++++++ P + k++ + G++g + ++++ + ++ ++ +++ + ++l +p+ p++llGrdlL+kl + L T037596_2 429 KEPLVRMTVGGRDIDFPVDTGAEHSLVTAPVAPLS----KKTLDITGATGVSaKQAFCSPRTCTVGGHQVIH--QFLYMPDRPLTLLGRDLLSKLRASL 521 58*********************************....*************899999999***********..*********************9987 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 2e-06 0.011 1 77 [. 433 502 .. 433 513 .. 0.69 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispelaeklglkvrksevtvrvsgagge.vkarlvrldslklggltlknvpalvld 77 v+ t++G++++f +DTGa ++l++ +a + +k+ t ++ga g k ++ ++ ++gg+++ +++l+++ T037596_2 433 VRMTVGGRDIDFPVDTGAEHSLVTAPVA-----PLSKK--TLDITGATGVsAKQAFCSPRTCTVGGHQVI-HQFLYMP 502 6789********************9999.....33332..455677777734556666667888887774.5666666 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 2e-06 0.011 1 91 [. 433 515 .. 433 516 .. 0.67 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 2e-06 EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGG-B..--------------.EEEEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseelaerlglsrkddkgkvevktangeveak.rvrldsvkiggielrnvsavvlegelddlLLGldfLk 91 v +t+ g++++f vDTGA+++++++ +a ls+k+ ++ a g+ ++ ++ ++gg+++ +++ ++ + LLG d L+ T037596_2 433 VRMTVGGRDIDFPVDTGAEHSLVTAPVAP---LSKKT----LDITGATGVSAKQaFCSPRTCTVGGHQVI-HQFLYMP-DRPLTLLGRDLLS 515 5789********************99984...33333....55666767654330345667777777765.3566664.4455677777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 4504.74 // Query: T037596_3 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-25 89.1 0.4 3.7e-25 88.6 0.4 1.2 1 Gag_p30 Gag P30 core shell protein 1.2e-08 34.6 0.0 1.8e-08 34.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.6 0.4 4.5e-29 3.7e-25 2 143 .. 830 972 .. 829 976 .. 0.94 Alignments for each domain: == domain 1 score: 88.6 bits; conditional E-value: 4.5e-29 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevd.eafpltrpdwdyetae 100 y f+++dl nw +n p+ +e+pq+l l+++++ th+ptw dc +ll l+ +er+r l a k ++ q p+e + +p t p+ d + e T037596_3 830 YQAFTSADLLNWENNTPPSTEKPQALIDLLQTVIQTHNPTWADCHRLLMFLFNRDERRRGLQAATKWLEEYAPADCQNPQEYGrTQLPGTNPQMDPHERE 929 789****************************************************************99988888888888762569************* PP Gag_p30 101 greslklyrqlllaglrgaarrptnlakvkevvqgkeespaaf 143 ++l+ r++ll gl+ a++ tn+ kv ev+qgk +++ T037596_3 930 DMQRLNPDREALLEGLKRGAQKATNVNKVSEVIQGKRRKSSTI 972 ************************************9887765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.0 2.2e-12 1.8e-08 1 156 [. 632 743 .. 632 751 .. 0.87 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.2e-12 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +pK++++ yRp d+++l +++ +++ p+ + ++ ++ +++ lDlk+aF+ ++l+ + +kl+af+ + T037596_3 632 VPKPQTKVYRPgQ-----DLRLLRQATLT---------FHPTVPNPSTLLGL------------LPAEDSCFTCLDLKDAFFPIRLAPERQKLFAFQWEG 705 69999999***88.....***********.........99999999999555............56788******************************7 PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrk 156 + ++ +++y+++glpq +++SP++f ++ + l+++ + T037596_3 706 P-------------------ESGVTTQYTWTGLPQRFKNSPTIFGEALARDLQRFPT 743 7...................34569*******************8887777776665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 5694.67 // Query: T132270_1 [L=2747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.65 # Mc/sec: 12090.31 // Query: T132270_2 [L=2747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.77 # Mc/sec: 10206.10 // Query: T132270_3 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 11552.70 // Query: T272692_1 [L=1372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 5688.49 // Query: T272692_2 [L=1372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 6330.74 // Query: T272692_3 [L=1372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 7268.63 // Query: T379441_1 [L=798] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (798 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 4307.44 // Query: T379441_2 [L=798] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (798 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 4005.16 // Query: T379441_3 [L=797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 3353.06 // Query: T310079_1 [L=9438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.79u 0.50s 00:00:03.29 Elapsed: 00:00:00.94 # Mc/sec: 28723.95 // Query: T310079_2 [L=9438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-05 24.1 2.6 6.2e-05 22.8 2.6 1.8 1 zf-CCHC Zinc knuckle 0.0012 18.9 0.0 0.0023 18.0 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.86 9.2 3.9 2.3 7.9 3.9 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 2.6 1.1e-08 6.2e-05 2 18 .] 1450 1466 .. 1449 1466 .. 0.94 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 1.1e-08 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C + GH+a++Cp+ T310079_2 1450 ACYTCRKSGHWAKECPQ 1466 7***************7 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 4.2e-07 0.0023 7 89 .. 1534 1611 .. 1529 1611 .. 0.84 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 4.2e-07 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEE.ETTEEEEE..EEEESTTSSSEEE- CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievl.lieekfrgevsplilpelpvnllG 89 +++ ++g+++ +l+ t A+++ ++ + P + a+ ++ G+ g+ ++ ++ ++ + l + f+ s+l++p++pv+llG T310079_2 1534 VTLTVEGEPVPFLINTEATHSTLPSFQGPVS----LASITVVGVDGQASKPLKTPQLWCqLRQYSFK--HSFLVIPTCPVPLLG 1611 68889999***********************....************97777776444304444455..5************99 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 3.9 0.00042 2.3 1 18 [. 1447 1464 .. 1447 1465 .. 0.97 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00042 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C C k Hwa++C T310079_2 1447 PPGACYTCRKSGHWAKEC 1464 89**************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.46u 0.43s 00:00:02.89 Elapsed: 00:00:00.86 # Mc/sec: 31395.95 // Query: T310079_3 [L=9437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 15.2 0.2 0.028 14.0 0.2 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.2 1.7e-06 0.028 2 19 .] 7736 7753 .. 7736 7753 .. 0.98 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.7e-06 DUF1725 2 FagKWMELEnIILSEisQ 19 F ++WM+LE+ I SE++Q T310079_3 7736 FTATWMGLETSIVSEVTQ 7753 99***************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.73u 0.43s 00:00:03.16 Elapsed: 00:00:00.92 # Mc/sec: 29345.27 // Query: T155509_1 [L=3004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.69 # Mc/sec: 12454.98 // Query: T155509_2 [L=3003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.79 # Mc/sec: 10874.78 // Query: T155509_3 [L=3003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 12633.93 // Query: T293093_1 [L=1772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 7566.25 // Query: T293093_2 [L=1772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 7566.25 // Query: T293093_3 [L=1772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 7566.25 // Query: T294567_1 [L=1744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 7446.70 // Query: T294567_2 [L=1744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 9071.43 // Query: T294567_3 [L=1744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 8456.42 // Query: T157242_1 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 9460.07 // Query: T157242_2 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 10448.43 // Query: T157242_3 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.71 # Mc/sec: 9859.79 // Query: T191974_1 [L=2137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 8491.10 // Query: T191974_2 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 8856.13 // Query: T191974_3 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.60 # Mc/sec: 10184.55 // Query: T277117_1 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5112.58 // Query: T277117_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 4802.73 // Query: T277117_3 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 4948.34 // Query: T060456_1 [L=3464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:00.71 # Mc/sec: 13957.63 // Query: T060456_2 [L=3464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-07 30.8 0.5 0.52 10.3 0.1 4.3 4 zf-BED BED zinc finger ------ inclusion threshold ------ 0.1 12.9 0.2 76 3.7 0.1 3.6 4 DUF3505 Protein of unknown function (DUF3505) 0.33 11.0 2.1 46 4.1 0.0 3.7 4 DUF678 Protein of unknown function (DUF678) Domain annotation for each model (and alignments): >> zf-BED BED zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 0.1 9.5e-05 0.52 14 44 .] 1730 1759 .. 1720 1759 .. 0.89 2 ? 0.1 0.0 0.14 7.7e+02 15 43 .. 1890 1917 .. 1885 1918 .. 0.72 3 ! 8.5 0.0 0.00033 1.8 8 44 .] 2037 2072 .. 2031 2072 .. 0.87 4 ! 6.0 0.0 0.002 11 13 44 .] 2205 2235 .. 2197 2235 .. 0.87 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 9.5e-05 SS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++ vC+ Cg l+ + +krH+r kHp T060456_2 1730 RHGMVCMVCGSSLAT-LKLSTIKRHIRQKHP 1759 67889**********.5*************8 PP == domain 2 score: 0.1 bits; conditional E-value: 0.14 S--EETTTTEE----SSTHHHHHHHHHS- CS zf-BED 15 qkavCryCgkvlsrgngttnLkrHLrrkH 43 +++vC+ Cg+ l + +++H H T060456_2 1890 NRLVCMACGRALPSL-HLDDIRAHVLEVH 1917 899******998773.6666666665555 PP == domain 3 score: 8.5 bits; conditional E-value: 0.00033 ----GGSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 8 tiveakkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++++++ +vC Cg l++ + + rH+rr+Hp T060456_2 2037 MELDGGRRGLVCGVCGGALAS-LKMSTIERHIRRRHP 2072 5566888999***********.5*************8 PP == domain 4 score: 6.0 bits; conditional E-value: 0.002 GSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 13 kkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 + +vC+ Cg l+ ++ +krH+ Hp T060456_2 2205 SRRGLVCMVCGGALAT-LKVSTIKRHILQVHP 2235 56678***********.5**********9998 PP >> DUF3505 Protein of unknown function (DUF3505) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.1 0.014 76 9 35 .. 1730 1759 .. 1723 1774 .. 0.74 2 ? -2.4 0.0 1.1 5.7e+03 4 29 .. 1884 1912 .. 1882 1919 .. 0.69 3 ? 2.8 0.0 0.026 1.4e+02 12 39 .. 2046 2076 .. 2037 2112 .. 0.74 4 ? 1.2 0.0 0.083 4.5e+02 4 53 .. 2201 2252 .. 2198 2259 .. 0.68 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.014 DUF3505 9 yrvliCreCkyavlp...selerHLrkrhr 35 + ++C C ++++ s+++rH+r++h T060456_2 1730 RHGMVCMVCGSSLATlklSTIKRHIRQKHP 1759 445788888877766666888999998885 PP == domain 2 score: -2.4 bits; conditional E-value: 1.1 DUF3505 4 eyneeyrvliCreCkyavlp...selerH 29 y+++ + l+C +C a+ +++ H T060456_2 1884 DYDPRGNRLVCMACGRALPSlhlDDIRAH 1912 577777889*****999877444555555 PP == domain 3 score: 2.8 bits; conditional E-value: 0.026 DUF3505 12 liCreCkyavlp...selerHLrkrhrqlkr 39 l+C C a++ s++erH+r+rh r T060456_2 2046 LVCGVCGGALASlkmSTIERHIRRRHPGSTR 2076 79999999998777799******99976544 PP == domain 4 score: 1.2 bits; conditional E-value: 0.083 DUF3505 4 eyneeyrvliCreCkyavlp...selerHLrkrhrqlkrektqelletvehem 53 y+ + r l+C C a++ s+++rH+ + h + + t e ++t+ +++ T060456_2 2201 DYDGSRRGLVCMVCGGALATlkvSTIKRHILQVHP-FSMDFTPEERQTILEAY 2252 57777788999999999887777999999875443.33455566666665554 PP >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.017 94 55 72 .. 1729 1746 .. 1717 1748 .. 0.79 2 ? 4.1 0.0 0.0085 46 54 71 .. 1887 1904 .. 1877 1908 .. 0.85 3 ? -1.1 0.0 0.36 2e+03 54 72 .. 2041 2059 .. 2030 2061 .. 0.77 4 ? -0.9 0.0 0.3 1.6e+03 57 72 .. 2207 2222 .. 2197 2223 .. 0.83 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.017 DUF678 55 kgntlrCaACgSsLtlLr 72 + + + C CgSsL +L+ T060456_2 1729 ARHGMVCMVCGSSLATLK 1746 566789*********997 PP == domain 2 score: 4.1 bits; conditional E-value: 0.0085 DUF678 54 gkgntlrCaACgSsLtlL 71 ++gn l C ACg +L +L T060456_2 1887 PRGNRLVCMACGRALPSL 1904 679***********9887 PP == domain 3 score: -1.1 bits; conditional E-value: 0.36 DUF678 54 gkgntlrCaACgSsLtlLr 72 g l C Cg +L +L+ T060456_2 2041 GGRRGLVCGVCGGALASLK 2059 5567799********9996 PP == domain 4 score: -0.9 bits; conditional E-value: 0.3 DUF678 57 ntlrCaACgSsLtlLr 72 l C Cg +L +L+ T060456_2 2207 RGLVCMVCGGALATLK 2222 5799********9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 12085.26 // Query: T060456_3 [L=3463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.79 # Mc/sec: 12540.58 // Query: T228208_1 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 6187.57 // Query: T228208_2 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 6562.57 // Query: T228208_3 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 7100.49 // Query: T089847_1 [L=2956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.80 # Mc/sec: 10570.77 // Query: T089847_2 [L=2956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.75 # Mc/sec: 11275.48 // Query: T089847_3 [L=2955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.75 # Mc/sec: 11271.67 // Query: T124708_1 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 2167.44 // Query: T124708_2 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 1967.37 // Query: T124708_3 [L=446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 1876.37 // Query: T263541_1 [L=1975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.74 # Mc/sec: 7635.32 // Query: T263541_2 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 8184.46 // Query: T263541_3 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.069 13.3 1.6 0.22 11.7 1.6 1.8 1 Metallothi_Euk2 Eukaryotic metallothionein Domain annotation for each model (and alignments): >> Metallothi_Euk2 Eukaryotic metallothionein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 1.6 1.4e-05 0.22 15 35 .. 853 873 .. 847 880 .. 0.87 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.4e-05 Metallothi_Euk2 15 dsckcGatcvkscsGgekckc 35 dsc c + c +sc G e c+ T263541_3 853 DSCTCPSACFPSCKGFEWCQQ 873 9*****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 679 (0.0416411); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.69 # Mc/sec: 8184.46 // Query: T315761_1 [L=496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.57 # Mc/sec: 2446.50 // Query: T315761_2 [L=496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.57 # Mc/sec: 2446.50 // Query: T315761_3 [L=495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.50 # Mc/sec: 2832.22 // Query: T330816_1 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-05 23.4 44.0 0.39 11.0 1.0 8.3 7 FlaC_arch Flagella accessory protein C (FlaC) 5.9e-05 23.4 20.1 1 9.6 0.2 5.4 5 HrpB7 Bacterial type III secretion protein (HrpB7) 0.002 17.9 47.0 0.0036 17.0 12.0 3.5 4 ERM Ezrin/radixin/moesin family 0.0021 17.4 0.0 1.9 7.6 0.0 2.3 2 Reo_sigmaC Reovirus sigma C capsid protein ------ inclusion threshold ------ 0.069 13.0 38.4 1.1 9.2 3.9 4.4 3 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein C 0.33 11.1 4.8 4.1 7.7 0.4 3.5 3 BLOC1_2 Biogenesis of lysosome-related organelles com 0.79 9.6 23.6 1.9 8.4 4.8 4.7 4 DUF1664 Protein of unknown function (DUF1664) Domain annotation for each model (and alignments): >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.0 1.0 0.00017 0.39 2 38 .. 153 189 .. 147 191 .. 0.84 2 ! 5.8 6.7 0.0071 17 3 27 .. 196 220 .. 176 273 .. 0.70 3 ? 0.8 1.1 0.26 6e+02 5 34 .. 491 520 .. 460 538 .. 0.61 4 ! 5.8 3.3 0.0069 16 7 37 .. 528 558 .. 513 573 .. 0.55 5 ! 7.8 1.0 0.0017 4 5 38 .. 575 608 .. 565 617 .. 0.63 6 ! 8.8 1.3 0.00083 1.9 2 36 .. 600 634 .. 589 642 .. 0.63 7 ! 6.9 0.7 0.0032 7.5 2 37 .. 642 677 .. 641 687 .. 0.89 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00017 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenVk 38 i+++E +++ ++ e++t+++e ++ +v ++e +V T330816_1 153 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVG 189 6889999999999999999999999999999988885 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0071 FlaC_arch 3 delEnklsklsteletvkkeneels 27 + +E +++ +++e++++++e ++ T330816_1 196 GMMEAEVGMIEVEVGMIEAEVGMME 220 2344444444444444444444444 PP == domain 3 score: 0.8 bits; conditional E-value: 0.26 FlaC_arch 5 lEnklsklsteletvkkeneelsksveele 34 +E +++ ++ e ++ ++e + ++ ++e T330816_1 491 MEAEVGMMEAEAGMREAEAGMREAEIGMME 520 444444444444444444444444444443 PP == domain 4 score: 5.8 bits; conditional E-value: 0.0069 FlaC_arch 7 nklsklsteletvkkeneelsksveeleenV 37 ++++ ++ e++++++e ++ +v ++e +V T330816_1 528 EEVGMMEAEVGMMEAEVGMMEAEVGMMEAEV 558 4444444444444444444444444444444 PP == domain 5 score: 7.8 bits; conditional E-value: 0.0017 FlaC_arch 5 lEnklsklsteletvkkeneelsksveeleenVk 38 +E +++ + e+++v++e ++ +v ++e +V T330816_1 575 MEAEVGMREAEVGMVEAEVGMMEAEVGMMEAEVG 608 5666666666666666666666666666666553 PP == domain 6 score: 8.8 bits; conditional E-value: 0.00083 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleen 36 ++ +E +++ ++ +++v++e ++ +v ++e + T330816_1 600 VGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAE 634 34456666666666666666666666666666655 PP == domain 7 score: 6.9 bits; conditional E-value: 0.0032 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenV 37 ++ +E ++++++ e+++ ++e ++ +v ++e +V T330816_1 642 VGMMEAEVGRMEAEVGMREAEVGMMEVEVGMMEAEV 677 5679****************************9988 PP >> HrpB7 Bacterial type III secretion protein (HrpB7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.1 0.005 12 74 123 .. 153 202 .. 147 216 .. 0.55 2 ! 9.6 0.2 0.00045 1 82 136 .. 217 271 .. 208 273 .. 0.63 3 ? 0.9 1.0 0.21 4.8e+02 85 130 .. 457 502 .. 442 522 .. 0.56 4 ! 5.7 3.3 0.007 16 69 128 .. 546 605 .. 498 614 .. 0.47 5 ! 9.0 0.4 0.00066 1.5 81 128 .. 614 661 .. 605 683 .. 0.85 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.005 HrpB7 74 ylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqi 123 + +++a +++++++v+ +eae+ ++++ e++v +++++ ++a++ T330816_1 153 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEV 202 33444444555555555555555555555555555555555555555554 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00045 HrpB7 82 dvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrra 136 +++e++v+ +eae+ ++++ e++v ++++++ + ++++ ++r+er +++ T330816_1 217 GMMEAEVGMMEAEVGMREAEVGMIEAEVGLREEEVGMWKQRLERWKQRLERWKQK 271 5556666666666666666666666666666666666666666666666666555 PP == domain 3 score: 0.9 bits; conditional E-value: 0.21 HrpB7 85 egrvraaeaelaaarqaldaaedavaatarkiaRndaqidacreri 130 e++v+ +eae+ ++++ +e +v ++++++ ++a++ +++ + T330816_1 457 EAEVGLMEAEVGLREAEVGMREGEVGMREAEVGMMEAEVGMMEAEA 502 3455555555555555555555555555555555555554444433 PP == domain 4 score: 5.7 bits; conditional E-value: 0.007 HrpB7 69 fsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacre 128 + a++ ++a ++ +e++v +eae+ ++++ +e++v ++++++ ++a++ +++ T330816_1 546 MMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEAEVGMREAEVGMVEAEVGMMEAEVGMMEA 605 333333334444444444455555555555555555555555555555555554444444 PP == domain 5 score: 9.0 bits; conditional E-value: 0.00066 HrpB7 81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacre 128 ++++e++v+ +eae+ ++++ +e++v +++++R++a++ ++ T330816_1 614 VGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREA 661 678999999999999999999999999999999999999999876555 PP >> ERM Ezrin/radixin/moesin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 12.0 1.5e-06 0.0036 1 126 [. 147 272 .. 147 273 .. 0.93 2 ? 2.7 14.6 0.036 84 19 115 .. 472 568 .. 435 572 .. 0.71 3 ! 7.3 15.3 0.0014 3.3 7 118 .. 490 599 .. 483 611 .. 0.80 4 ! 6.8 8.0 0.002 4.8 9 123 .. 567 683 .. 561 711 .. 0.83 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 1.5e-06 ERM 1 eeaerekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeser 100 e +e e + +e + ++ e+ ++++ e ++ ++ + ++e e ++e++ +e e ++ + + e+e +e+++ e+e+ +e e+ T330816_1 147 ETMEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEAEVGMREAEVGMIEAEVGL 246 56788888999999999999999999999999999999999999999999999999999999************************************** PP ERM 101 reeeaeklkeeleeareaeeeakekl 126 reee+ ++k++le+ ++++e+ k+kl T330816_1 247 REEEVGMWKQRLERWKQRLERWKQKL 272 *********************99998 PP == domain 2 score: 2.7 bits; conditional E-value: 0.036 ERM 19 eeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeserreeeaeklkeeleea 115 e+ +++ + e ++ ++ + ++e ea + e++a e+ei ++ + + eee +e+++ +e+e+ +e e+ + e+e+ +++e+ ++ T330816_1 472 AEVGMREGEVGMREAEVGMMEAEVGMMEAEAGMREAEAGMREAEIGMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMM 568 2333333444445566667888888888888888888888899999999999999999999999999999999999999988888887777776665 PP == domain 3 score: 7.3 bits; conditional E-value: 0.0014 ERM 7 kreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeserreeeae 106 +e + ++ ea +++++ e ++ ++ + + eee ++e++ +e+e ++ + + e+e +e+++ +e+e+ +e e+ +re+e+ T330816_1 490 M--MEAEVGMMEAEAGMREAEAGMREAEIGMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEAEVGMREAEVG 587 3..444444555555555555555566688999999999************************************************************* PP ERM 107 klkeeleearea 118 + ++e+ +++ + T330816_1 588 MVEAEVGMMEAE 599 999997665544 PP == domain 4 score: 6.8 bits; conditional E-value: 0.002 ERM 9 eleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaeeLeqkaaeaeeeiqrlkesaekeeeekeklerkareaeleaarleeeserreeeaekl 108 +e + ++ e+ +++++ e ++ ++ + ++e e ++e++ +e+e ++ + + e+e e+++ +e+e+ r+e e+ +re+e+ ++ T330816_1 567 MMEAEVGLMEAEVGMREAEVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAEVGMM 666 5677777788888889999999999999999999999999999999999999999999999999999999999999999999*******99999999999 PP ERM 109 kee..leeareaeeeak 123 + e ++ea+ +ea+ T330816_1 667 EVEvgMMEAEVGMREAE 683 98833344444444444 PP >> Reo_sigmaC Reovirus sigma C capsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.6 0.0 0.00083 1.9 40 138 .. 149 247 .. 147 263 .. 0.75 2 ! 7.4 0.0 0.00098 2.3 37 127 .. 565 655 .. 513 691 .. 0.51 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00083 Reo_sigmaC 40 leaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsan 138 +ea ++++ v+ + +++ ++a+++ + ++ ++ae+ +++ev ++ v + e+ + v +a + ++ ev +++ ++++v + T330816_1 149 MEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEAEVGMREAEVGMIEAEVGLR 247 677788888888888888888888888888888888888888888888888888888888888888888888888888888777777777777776655 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00098 Reo_sigmaC 37 ltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstd 127 ++ +ea + +++ v+ +++ ++a+++ + ++ ++ae+ ++++v ++ v + +e+ + v ++a + ++ ev ++ T330816_1 565 VVMMEAEVGLMEAEVGMREAEVGMVEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAE 655 2334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 11.0 0.00065 1.5 22 101 .. 149 228 .. 146 273 .. 0.53 2 ? 6.7 5.5 0.0027 6.3 25 96 .. 515 586 .. 504 591 .. 0.87 3 ? 9.2 3.9 0.00046 1.1 22 118 .. 589 687 .. 581 694 .. 0.80 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00065 CENP-F_leu_zip 22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLes 101 ++ +e +e+e+ m++++ ++ e+ t aev +++e+ ++++e +e+++ + e +e e+ + +v +e+ T330816_1 149 MEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVEVGMIEAEVGMMEAEVGMMEA 228 34455555555555555555555555555555555555555555555555555555555544444444444444443333 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0027 CENP-F_leu_zip 25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqerv 96 + +e+e+ m ee+ ++ e+ aev +++e+ ++++e +e+++v + e +e e+ +v T330816_1 515 EIGMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEAEVGMREAEV 586 67889**********999999999999*************************99999888888877666655 PP == domain 3 score: 9.2 bits; conditional E-value: 0.00046 CENP-F_leu_zip 22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe..slnsslenlleekE 114 ++ v +e+e+ m+e++ ++ ++ aev +++e+ ++++e e+++ + e +e e+ +v +e ++ e ++e+E T330816_1 589 VEAEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEVGMREAEVGMMEAEVGRMEAEVGMREAEVGMMEveVGMMEAEVGMREAE 683 6778899*********************************************************9999988888765550045555555556666 PP CENP-F_leu_zip 115 qekv 118 ++ T330816_1 684 VAMM 687 5555 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 0.4 0.0018 4.1 12 86 .. 150 221 .. 146 237 .. 0.45 2 ? 0.8 0.0 0.24 5.6e+02 58 88 .. 528 558 .. 514 566 .. 0.56 3 ? 3.1 0.3 0.046 1.1e+02 17 93 .. 539 612 .. 530 663 .. 0.63 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0018 BLOC1_2 12 eaeleatvedyklLekmNkaasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 eae+e +++ ++++ ++++++ ++ ++ +e+e+ +++ e+ + ++ ie +v +e+ v ++++ T330816_1 150 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEA---EVGMMEAEVGMIEVEVGMIEAEVGMMEA 221 44444444444444444444444444444444444444444444...4444444444444444444444444443 PP == domain 2 score: 0.8 bits; conditional E-value: 0.24 BLOC1_2 58 eelqpylqqidqiekqvteLeeavseLDeys 88 ee+ + ++ +e++v +e+ v ++++ + T330816_1 528 EEVGMMEAEVGMMEAEVGMMEAEVGMMEAEV 558 4444444455555555555555555555444 PP == domain 3 score: 3.1 bits; conditional E-value: 0.046 BLOC1_2 17 atvedyklLekmNkaasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEs 93 + +++ ++e+ +++++ ++ ++ +e+e+ +++ e+ ++ +e++v +e+ v ++++ + +E+ T330816_1 539 MMEAEVGMMEAEVGMMEAEVGLMEAEVVMMEAEVGLMEA---EVGMREAEVGMVEAEVGMMEAEVGMMEAEVGMMEA 612 444444444444555555555555555555555554444...44444555555555555555555555554444443 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 4.8 0.00081 1.9 65 121 .. 150 206 .. 147 243 .. 0.58 2 ? 1.0 0.4 0.15 3.5e+02 89 117 .. 202 230 .. 197 272 .. 0.61 3 ? 4.9 1.0 0.0093 22 69 121 .. 517 569 .. 497 578 .. 0.63 4 ? 4.3 2.3 0.015 34 73 117 .. 591 635 .. 583 679 .. 0.67 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00081 DUF1664 65 sqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +++i+++++++ +k+ +++ev +++ ++ ++ +v +++ v +e+ + ie T330816_1 150 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIE 206 344555555555555555555555555555555555555555555555555444444 PP == domain 2 score: 1.0 bits; conditional E-value: 0.15 DUF1664 89 vtevredlseikedvesvkeavegLeskl 117 v ++ ++ i+ +v +++ v +e+ + T330816_1 202 VGMIEVEVGMIEAEVGMMEAEVGMMEAEV 230 44444444444444444444444444433 PP == domain 3 score: 4.9 bits; conditional E-value: 0.0093 DUF1664 69 drvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +++++ +e +++ev ++ ++ ++ +v +++ v +e+ + +e T330816_1 517 GMMEAEVGMREEEVGMMEAEVGMMEAEVGMMEAEVGMMEAEVGLMEAEVVMME 569 55555555555555556666666666666666666666666666665555554 PP == domain 4 score: 4.3 bits; conditional E-value: 0.015 DUF1664 73 kkldeqkeiskeikeevtevredlseikedvesvkeavegLeskl 117 +++ +++ +++ev ++ d+ ++ +v v++ v +e+ + T330816_1 591 AEVGMMEAEVGMMEAEVGMMEADVGMVEAEVGMVEAEVGMMEAEV 635 444455555555555555555555555555555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 4510.01 // Query: T330816_2 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 4694.10 // Query: T330816_3 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4510.01 // Query: T099558_1 [L=6418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.30s 00:00:01.68 Elapsed: 00:00:00.59 # Mc/sec: 31120.01 // Query: T099558_2 [L=6418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.29s 00:00:01.62 Elapsed: 00:00:00.55 # Mc/sec: 33383.29 // Query: T099558_3 [L=6418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.47 10.4 5.8 3.9 7.4 2.1 3.5 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.1 0.01 1.6e+02 17 29 .. 588 600 .. 586 601 .. 0.93 2 ? 7.4 2.1 0.00024 3.9 17 30 .. 2955 2968 .. 2953 2969 .. 0.96 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.01 Toxin_18 17 CSGAcSaaFgyCL 29 CSGA Sa +CL T099558_3 588 CSGAISAHRKLCL 600 *******999998 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00024 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T099558_3 2955 CSGAISAHCNLCLP 2968 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.57 # Mc/sec: 31656.56 // Query: T324424_1 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 10082.97 // Query: T324424_2 [L=1726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 9144.06 // Query: T324424_3 [L=1726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 9316.59 // Query: T227655_1 [L=4372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1011 (0.0620017); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.38s 00:00:01.89 Elapsed: 00:00:00.62 # Mc/sec: 20173.47 // Query: T227655_2 [L=4372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1189 (0.0729179); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.37s 00:00:02.02 Elapsed: 00:00:00.61 # Mc/sec: 20504.18 // Query: T227655_3 [L=4372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 929 (0.0569729); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.62 # Mc/sec: 20173.47 // Query: T156314_1 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7141.07 // Query: T156314_2 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 6746.36 // Query: T156314_3 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-14 52.1 0.0 1.1e-13 51.3 0.0 1.5 1 EF-hand_7 EF-hand domain pair 4.1e-11 41.5 0.1 8.1e-05 21.8 0.0 2.5 2 EF-hand_1 EF hand 2.2e-07 30.4 0.1 6.9e-06 25.6 0.0 2.5 3 EF-hand_8 EF-hand domain pair 6.3e-07 28.5 0.1 0.025 14.0 0.0 2.3 2 EF-hand_5 EF hand 7.3e-07 28.5 0.0 0.0011 18.6 0.0 2.5 2 EF-hand_6 EF-hand domain Domain annotation for each model (and alignments): >> EF-hand_7 EF-hand domain pair # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.3 0.0 3.5e-17 1.1e-13 2 70 .. 256 323 .. 255 324 .. 0.91 Alignments for each domain: == domain 1 score: 51.3 bits; conditional E-value: 3.5e-17 EF-hand_7 2 eklkeaFkelDtdgdgyldkeeLlrllrrifegagegkkltdeeleylfkclDldgdGvisfdEFlkly 70 +++++aF++lD+d++g+++ +e++ +l i ++ g++ +ltdee e +++ D++gdG+i+++EF +l+ T156314_3 256 DAIHTAFQSLDKDKSGFIEWNEIKYILSIIPSS-GPTTPLTDEEAEAMIQAADTHGDGRINYEEFSELI 323 689*********************777765555.*******************************9886 PP >> EF-hand_1 EF hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.0 5.9e-07 0.0019 3 27 .. 259 283 .. 257 285 .. 0.90 2 ! 21.8 0.0 2.5e-08 8.1e-05 1 28 [. 298 325 .. 298 326 .. 0.93 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.9e-07 HHHHHHHTTTSSSSEEHHHHHHHHH CS EF-hand_1 3 keiFrefDkDgdGkIdfeEfkellk 27 +F+ +DkD++G+I+++E k +l+ T156314_3 259 HTAFQSLDKDKSGFIEWNEIKYILS 283 679*****************99885 PP == domain 2 score: 21.8 bits; conditional E-value: 2.5e-08 HHHHHHHHHTTTSSSSEEHHHHHHHHHH CS EF-hand_1 1 elkeiFrefDkDgdGkIdfeEfkellkk 28 e + +++ +D+ gdG+I++eEf el+kk T156314_3 298 EAEAMIQAADTHGDGRINYEEFSELIKK 325 5789********************9997 PP >> EF-hand_8 EF-hand domain pair # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.1 2.2 7.3e+03 12 28 .. 209 224 .. 201 226 .. 0.54 2 ? 2.0 0.0 0.051 1.7e+02 24 47 .. 255 278 .. 242 279 .. 0.86 3 ! 25.6 0.0 2.1e-09 6.9e-06 20 52 .. 293 324 .. 281 326 .. 0.87 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 2.2 EF-hand_8 12 ral.rllglkglseeevd 28 +++ ++ g++ ls+++++ T156314_3 209 KMAlAM-GTS-LSDKDIE 224 223233.666.9998887 PP == domain 2 score: 2.0 bits; conditional E-value: 0.051 EF-hand_8 24 eeevdilfrefDtdgdGkisfeEF 47 ++++++ f +D d++G i ++E T156314_3 255 DDAIHTAFQSLDKDKSGFIEWNEI 278 5679999**************995 PP == domain 3 score: 25.6 bits; conditional E-value: 2.1e-09 EF-hand_8 20 kglseeevdilfrefDtdgdGkisfeEFcvlle 52 + l++ee+++++ ++Dt gdG+i++eEF l + T156314_3 293 P-LTDEEAEAMIQAADTHGDGRINYEEFSELIK 324 4.9*************************98765 PP >> EF-hand_5 EF hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.2 0.0 2.9e-05 0.094 4 21 .. 261 278 .. 258 279 .. 0.88 2 ! 14.0 0.0 7.6e-06 0.025 3 24 .. 301 322 .. 300 323 .. 0.89 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 HHHHHSTTSSSCEEHHHH CS EF-hand_5 4 tFqaiDlNgDGkIskeEL 21 +Fq +D++++G+I E T156314_3 261 AFQSLDKDKSGFIEWNEI 278 7*************9996 PP == domain 2 score: 14.0 bits; conditional E-value: 7.6e-06 HHHHHHSTTSSSCEEHHHHHHH CS EF-hand_5 3 dtFqaiDlNgDGkIskeELkrl 24 ++ qa+D+ gDG+I eE+ +l T156314_3 301 AMIQAADTHGDGRINYEEFSEL 322 5679***************987 PP >> EF-hand_6 EF-hand domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 3.5e-07 0.0011 2 27 .. 258 283 .. 257 287 .. 0.93 2 ! 7.1 0.0 0.0016 5.2 8 28 .. 305 325 .. 299 331 .. 0.88 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 3.5e-07 EF-hand_6 2 lreaFklfDkdgdGkidaeElrkalr 27 ++ aF+ +Dkd++G+i ++E++ +l+ T156314_3 258 IHTAFQSLDKDKSGFIEWNEIKYILS 283 6789******************9997 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0016 EF-hand_6 8 lfDkdgdGkidaeElrkalrk 28 + D+ gdG+i +eE+ +++k T156314_3 305 AADTHGDGRINYEEFSELIKK 325 569************999884 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 6082.78 // Query: T021936_1 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 2727.65 // Query: T021936_2 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 2636.73 // Query: T021936_3 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3158.36 // Query: T313045_1 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 3966.65 // Query: T313045_2 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4125.32 // Query: T313045_3 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 3556.31 // Query: T105649_1 [L=5683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.34s 00:00:02.21 Elapsed: 00:00:00.87 # Mc/sec: 18687.47 // Query: T105649_2 [L=5682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 46.8 2.8 3.5e-12 45.6 2.8 1.7 1 SERTA SERTA motif 9e-12 44.9 3.0 2.2e-11 43.7 3.0 1.7 1 UPF0730 UPF0730 unknown protein family Domain annotation for each model (and alignments): >> SERTA SERTA motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 2.8 4.2e-16 3.5e-12 1 36 [] 3639 3673 .. 3639 3673 .. 0.96 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 4.2e-16 SERTA 1 vLnlSLvKLqrsrdlvEpsLrRsVLInNtLRrIqrE 36 +L+lSL+KL++ +d +E +LrRsVLInN+LR+I+ E T105649_2 3639 ILKLSLEKLRFLED-PETYLRRSVLINNLLRKIHLE 3673 89************.******************966 PP >> UPF0730 UPF0730 unknown protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.7 3.0 2.7e-15 2.2e-11 1 46 [] 3705 3750 .. 3705 3750 .. 0.99 Alignments for each domain: == domain 1 score: 43.7 bits; conditional E-value: 2.7e-15 UPF0730 1 dccaePfsyeelqhyhvvPyGsGnclyGlGyPssPPdhsPqllvyk 46 +cc++ + yeel yh+vPy s n +y +Gy ss + qll+yk T105649_2 3705 ECCSQSLYYEELHSYHIVPYASENAIYEMGYTSSHLEQNSQLLIYK 3750 6********************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.69u 0.38s 00:00:02.06 Elapsed: 00:00:00.70 # Mc/sec: 23221.77 // Query: T105649_3 [L=5682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.41s 00:00:01.97 Elapsed: 00:00:00.72 # Mc/sec: 22576.72 // Query: T313567_1 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 4359.36 // Query: T313567_2 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5492.79 // Query: T313567_3 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 5281.53 // Query: T374593_1 [L=2441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 10743.52 // Query: T374593_2 [L=2441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.5 0.0 0.19 11.8 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 1.2e-05 0.19 25 106 .. 1916 1992 .. 1899 1995 .. 0.80 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 1.2e-05 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374593_2 1916 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 1992 469******977.5555555556667788888887774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.66 # Mc/sec: 10580.74 // Query: T374593_3 [L=2440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-14 52.5 0.0 7.3e-14 51.9 0.0 1.3 1 rve Integrase core domain 1.6e-07 30.9 0.0 2.6e-07 30.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 1e-06 28.8 0.2 3e-06 27.3 0.2 1.9 1 zf-H2C2 His(2)-Cys(2) zinc finger 7.1e-05 22.9 0.0 0.00013 22.1 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.9 0.0 1.8e-17 7.3e-14 3 100 .. 1194 1287 .. 1192 1287 .. 0.96 Alignments for each domain: == domain 1 score: 51.9 bits; conditional E-value: 1.8e-17 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l r + ++g p+ + sDng+++++ +++ ++ lgi+++++ ++ T374593_3 1194 APFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTHVLLRDLIPRFGL-PLQISSDNGPAFVADLLQKTAKVLGITWKLHTTY 1287 689999********..9999***********************.******************9.*****************************99876 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 6.4e-11 2.6e-07 124 206 .. 351 433 .. 339 444 .. 0.91 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 6.4e-11 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklv 206 +++y++++lpqG+++SP++f ++ + l+++ +r g +ll+Y+D +l+ + + + ++++ +l+++++k++++ +++ T374593_3 351 TTQYTWTRLPQGFKNSPTIFREALARDLQKIPTRDLGFVLLQYVDNFLLGHPMAVMCAKGMDTLLWHLEDYRYKVSKKEAQIC 433 678************************************************************************99877766 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.2 7.3e-10 3e-06 1 37 [. 1136 1172 .. 1136 1172 .. 0.98 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 7.3e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCka 37 H++tHlG++ l++ll ++++l++++++++V+++C++ T374593_3 1136 HETTHLGQESLEKLLGWYFYILHLSALAKTVAQQCVT 1172 9**********************************86 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.0 3.1e-08 0.00013 34 117 .. 961 1043 .. 934 1046 .. 0.79 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 3.1e-08 EEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT.HHHHHHHHHCHCSSEEE CS RNase_H 34 sapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn.kelaellkelakkkkvq 117 +++l++ +++ ++ L+A+i a + + ++++vniytDS Y++ +++ + k++a ++ k++k +e+ +ll+++ k++kv T374593_3 961 AKSLPQGTSARKTKLIALILAFElS--EGKTVNIYTDSWYAFLTLQLRGAFYKEKAL-LNAGRKDIKYqQEILQLLEAVWKPQKVA 1043 5778899***************955..9***************66554444444444.5666778998799999999999988875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.75 # Mc/sec: 9307.23 // Query: T277878_1 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 8605.94 // Query: T277878_2 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 604 (0.0370416); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.73 # Mc/sec: 7191.26 // Query: T277878_3 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.59 # Mc/sec: 8897.67 // Query: T263546_1 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 769 (0.0471606); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.53 # Mc/sec: 9219.43 // Query: T263546_2 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 828 (0.0507789); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:00.76 # Mc/sec: 6429.34 // Query: T263546_3 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.7 6.7 8.5 0.19 11.9 1.6 1.9 2 Metallothi_Euk2 Eukaryotic metallothionein Domain annotation for each model (and alignments): >> Metallothi_Euk2 Eukaryotic metallothionein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.6 0.8 1 1.6e+04 42 53 .. 338 349 .. 336 350 .. 0.72 2 ? 11.9 1.6 1.2e-05 0.19 15 35 .. 523 543 .. 517 550 .. 0.87 Alignments for each domain: == domain 1 score: -4.6 bits; conditional E-value: 1 Metallothi_Euk2 42 sqckscGekckc 53 + c +cG + +c T263546_3 338 ASCTACGTRLNC 349 468888887776 PP == domain 2 score: 11.9 bits; conditional E-value: 1.2e-05 Metallothi_Euk2 15 dsckcGatcvkscsGgekckc 35 dsc c + c +sc G e c+ T263546_3 523 DSCTCPSACFPSCKGFEWCQQ 543 9*****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 7081.59 // Query: T126058_1 [L=1949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-23 82.5 0.1 3.5e-23 81.7 0.1 1.5 1 RVP Retroviral aspartyl protease 7.8e-17 60.6 4.5 1.8e-16 59.4 4.5 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 4.9e-06 26.4 1.5 8.5e-06 25.6 1.5 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf 1.7e-05 24.4 0.0 2.5e-05 23.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol ------ inclusion threshold ------ 0.015 14.8 0.0 0.026 14.1 0.0 1.3 1 dUTPase dUTPase 0.02 15.3 0.0 0.035 14.5 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.11 13.0 0.0 0.2 12.2 0.0 1.3 1 Asp_protease_2 Aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.7 0.1 1.5e-26 3.5e-23 2 100 .. 563 660 .. 562 661 .. 0.98 Alignments for each domain: == domain 1 score: 81.7 bits; conditional E-value: 1.5e-26 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++rP +++ i+gk+ ++l+DtGAd+++is +++P wp + a+ ++ G+g+a e++qs++i+++ + + + g+++p+i++ +p+nl+ rdlLq++g+++ T126058_1 563 DKRPTCEITIQGKKCKGLVDTGADISIISLQHWPSAWPSQPAQFNIVGVGKAPEVYQSSYILHCEGPDGQPGNIQPIITS-VPINLWRRDLLQQWGAQV 660 68******************************************************************************.***************985 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.4 4.5 7.9e-20 1.8e-16 2 33 .. 377 408 .. 376 411 .. 0.93 Alignments for each domain: == domain 1 score: 59.4 bits; conditional E-value: 7.9e-20 --B-TTT-SSBS-TTT---SEEGGGEE---XX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsane 33 p+ Cp+CkkgkHwa++Chskfdk Gnp s+n T126058_1 377 PEICPKCKKGKHWANQCHSKFDKAGNPISGNA 408 789***************************96 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.6 1.5 3.7e-09 8.5e-06 23 87 .] 1065 1129 .. 1059 1129 .. 0.93 Alignments for each domain: == domain 1 score: 25.6 bits; conditional E-value: 3.7e-09 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t +++pptw q+kkl+q+a l + t +++a + +++ v+ + ++ +++y+a T126058_1 1065 NTCRTQPPTWGQIKKLSQMAEENLRKAGQPVTMSNFMVAMIAVITTAVSIPSTRADTQNNYTYWA 1129 577899******************99999999999999999999999***999999********7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.0 1.1e-08 2.5e-05 17 99 .. 787 846 .. 784 871 .. 0.88 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 1.1e-08 .-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 17 vdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +d++a+n++++ + qpg++++ + +k++ l+ +Dlk++F+++pl++++ +++af++p T126058_1 787 TDLRAINSVTQP---------MGALQPGLPSPAII--------------PKSWPLIVIDLKDCFFTIPLAKQDCEWFAFTIPA 846 689999999999.........***********444..............9********************************3 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 1.1e-05 0.026 59 127 .. 488 547 .. 485 549 .. 0.75 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.1e-05 HHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 59 kglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaeleevetlkatergeggfgs 127 k + +++gvidsd Ge++ v+ +t+ + k + g+++ qL++++++ k+ +g+ggfgs T126058_1 488 KRGQIHTGVIDSDHDGEIQTVI--STSVPWKAEPGECVSQLLIVPYVG----M---GKSGTKGTGGFGS 547 55567788********666665..78999**************99887....1...1344556666665 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.0 1.5e-05 0.035 2 25 .. 569 592 .. 568 607 .. 0.92 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.5e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +iis T126058_1 569 EITIQGKKCKGLVDTGADISIISL 592 689*******************96 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 8.7e-05 0.2 2 26 .. 569 593 .. 568 599 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 8.7e-05 Asp_protease_2 2 pvtinGkpvrfllDTGasttlispe 26 ++ti Gk+++ l+DTGa++++is + T126058_1 569 EITIQGKKCKGLVDTGADISIISLQ 593 689******************9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 8322.03 // Query: T126058_2 [L=1948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.72 # Mc/sec: 7740.13 // Query: T126058_3 [L=1948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-07 28.1 0.6 1.4e-06 27.3 0.6 1.4 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.6 8.8e-11 1.4e-06 4 48 .. 984 1027 .. 981 1029 .. 0.93 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 8.8e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 v w+dl +++W +++++gr ++cv P ++++++w+P R ++ T126058_3 984 LVWWRDLITKSWET-GKIITWGRSYACVSPGQNQQLIWIPSRHLK 1027 699*********95.89*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.75 # Mc/sec: 7430.53 // Query: T174473_1 [L=4453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.36s 00:00:01.86 Elapsed: 00:00:00.73 # Mc/sec: 17451.06 // Query: T174473_2 [L=4453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.67 # Mc/sec: 19013.84 // Query: T174473_3 [L=4452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:00.83 # Mc/sec: 15345.08 // Query: T155827_1 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 3602.05 // Query: T155827_2 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 3962.25 // Query: T155827_3 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4245.27 // Query: T338759_1 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.8 0.0 2.3e-08 34.0 0.0 1.3 1 Trypsin Trypsin 0.0066 16.7 0.0 0.013 15.8 0.0 1.4 1 DUF1986 Domain of unknown function (DUF1986) Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.0 2.8e-12 2.3e-08 49 130 .. 204 280 .. 200 284 .. 0.88 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.8e-12 GEEEEESESBTTSETTTCEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTTBSSBHCCBBCSTTHTTSTTTEEEEEESSBS CS Trypsin 49 dvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvsGwgrt 130 +v+vv+g++++++ + ++ +v+kvi+h++y+p +ld D+ ll l++pv+++++ +p+cl++++ ++ c+ + w +t T338759_1 204 NVTVVMGTRTFSNIHS--ERKQVQKVIIHKDYKPPQLDSDLSLLLLATPVQFSNFKMPVCLQEEE---RTWDWCWMAQWVTT 280 5889999977777777..799******************************************55...58889999988665 PP >> DUF1986 Domain of unknown function (DUF1986) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 1.6e-06 0.013 42 99 .. 205 265 .. 198 272 .. 0.82 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.6e-06 DUF1986 42 vsvvlGgaktkksvkgpyeqivrvdafkdvp....ksevvllhleskvsfsrhvlPtfvpes 99 v+vv+G ++t +++++ +q+++v +kd s+++ll l+++v+fs+ +P+ + e T338759_1 205 VTVVMG-TRTFSNIHSERKQVQKVIIHKDYKppqlDSDLSLLLLATPVQFSNFKMPVCLQEE 265 667776.689**************99998642333799******************999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 4577.33 // Query: T338759_2 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 4286.77 // Query: T338759_3 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.73 # Mc/sec: 3758.27 // Query: T357995_1 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 934 (0.0572795); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.66 # Mc/sec: 6618.92 // Query: T357995_2 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 804 (0.049307); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.81 # Mc/sec: 5393.19 // Query: T357995_3 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1159 (0.0710781); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.70 # Mc/sec: 6236.61 // Query: T078885_1 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 5509.75 // Query: T078885_2 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.058 13.0 0.1 0.14 11.7 0.1 1.7 1 Paired_CXXCH_1 Doubled CXXCH motif (Paired_CXXCH_1) Domain annotation for each model (and alignments): >> Paired_CXXCH_1 Doubled CXXCH motif (Paired_CXXCH_1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.1 8.9e-06 0.14 12 34 .. 947 969 .. 945 970 .. 0.95 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 8.9e-06 Paired_CXXCH_1 12 CHnphgsdnpkllkkakgaalCy 34 CH+ h s+ p+l+++a ++lC+ T078885_2 947 CHEMHDSQSPGLVRDALVPDLCL 969 **********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 4958.77 // Query: T078885_3 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5214.74 // Query: T078699_1 [L=3099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 14299.54 // Query: T078699_2 [L=3098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 13635.16 // Query: T078699_3 [L=3098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 15826.52 // Query: T202861_1 [L=3308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.29s 00:00:01.41 Elapsed: 00:00:00.63 # Mc/sec: 15021.63 // Query: T202861_2 [L=3307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.71 # Mc/sec: 13325.02 // Query: T202861_3 [L=3307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 13139.95 // Query: T021193_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1781.74 // Query: T021193_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.7 6.1 8.1 4.7 5.8 8.1 1.0 1 DUF4551 Protein of unknown function (DUF4551) Domain annotation for each model (and alignments): >> DUF4551 Protein of unknown function (DUF4551) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 8.1 0.00029 4.7 87 231 .. 67 206 .. 63 237 .. 0.76 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00029 DUF4551 87 rercqHirityvtestalkselllskdkkselfkvspskasekksrressgaakkssslnessldakekeektvskksqlslslselrklseeekeeles 186 r c+H ++ + s + s + ls+ + s l++ s + + ++++ + ss+a++ +s ++s +a++ ++ + +s++++++s +ls + + +++ T021193_2 67 RLSCKHRKVF-THPSLCKSSPECLSRSRSSVLPRSSAAPHPSSAAPHPSSAAPRLNSAAPHPSSAARRLNNAAPLPSSAVPHPSSAALHLSSTAPHPNRP 165 6678887764.4456666777788888999999999998999999999999999999999*9999999999999*********99999999999988888 PP DUF4551 187 ekalkslrsasrplPesl.lsrapkppsspkeppssslskderdsk 231 + + +sa+ p+P s +++++ ++s++ d+r++ T021193_2 166 SSLASPHPSARSPVPPSAhPLSSARR-----PSRSKPWACDQRRTP 206 87778899999999966622222222.....222223333444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 1586.87 // Query: T021193_3 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 2066.80 // Query: T186008_1 [L=1303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 6212.77 // Query: T186008_2 [L=1303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 6212.77 // Query: T186008_3 [L=1303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 5647.97 // Query: T272749_1 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0042 16.6 0.1 0.0042 16.6 0.1 2.9 3 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.1 0.067 1.1e+03 11 21 .] 201 211 .. 200 211 .. 0.87 2 ! 16.6 0.1 2.6e-07 0.0042 4 20 .. 300 316 .. 300 317 .. 0.91 3 ? -3.6 0.4 0.8 1.3e+04 15 21 .] 496 502 .. 492 502 .. 0.81 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.067 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272749_1 201 WRGFVLTRSFR 211 9***9988886 PP == domain 2 score: 16.6 bits; conditional E-value: 2.6e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272749_1 300 VTVMQAHVRGWLERKRL 316 689************97 PP == domain 3 score: -3.6 bits; conditional E-value: 0.8 HHHHHHH CS IQ 15 laRkryk 21 + R++yk T272749_1 496 KMRQHYK 502 6899997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 770 (0.0472219); expected 326.1 (0.02) Passed bias filter: 535 (0.03281); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 2271.84 // Query: T272749_2 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.46 # Mc/sec: 3358.37 // Query: T272749_3 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.65 # Mc/sec: 2372.29 // Query: T138341_1 [L=1534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 7194.28 // Query: T138341_2 [L=1533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 6545.75 // Query: T138341_3 [L=1533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.79 # Mc/sec: 5551.46 // Query: T206689_1 [L=512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.52 # Mc/sec: 2816.82 // Query: T206689_2 [L=512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-16 59.5 1.3 8.9e-16 57.4 1.3 2.1 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.4 1.3 5.4e-20 8.9e-16 13 80 .] 303 370 .. 302 370 .. 0.90 Alignments for each domain: == domain 1 score: 57.4 bits; conditional E-value: 5.4e-20 Transposase_1 13 dkgetpkkvpkpelhqkkvmltV..wWsakgliyyeflppgetitsevYaqqldklr.qklqekrpalvnr 80 d +e+pk++pk++lh+kkvm+tV a++li+y++l+pgetitse+Yaq ++kl+ + lq+++palvnr T206689_2 303 DLEEAPKHFPKQNLHHKKVMVTV**S--AASLIHYSILNPGETITSEKYAQHINKLH*K-LQHLQPALVNR 370 789*******************7776..9***************************765.56688888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 3116.48 // Query: T206689_3 [L=511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 2357.88 // Query: T004249_1 [L=484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.67 # Mc/sec: 2066.63 // Query: T004249_2 [L=483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 2265.21 // Query: T004249_3 [L=483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 2265.21 // Query: T379984_1 [L=402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 1885.33 // Query: T379984_2 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2294.39 // Query: T379984_3 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.45 # Mc/sec: 2549.32 // Query: T325140_1 [L=175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 42 (0.00257574); expected 326.1 (0.02) Passed bias filter: 25 (0.00153318); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.47 # Mc/sec: 1065.20 // Query: T325140_2 [L=175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.48 # Mc/sec: 1043.01 // Query: T325140_3 [L=174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-11 41.5 0.9 2.1e-10 39.9 1.4 1.5 2 KRAB KRAB box Domain annotation for each model (and alignments): >> KRAB KRAB box # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 0.38 6.1e+03 3 12 .. 113 122 .. 113 122 .. 0.82 2 ! 39.9 1.4 1.3e-14 2.1e-10 14 36 .. 124 146 .. 124 149 .. 0.93 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.38 KRAB 3 tFeDVaVdFt 12 t +D a++ + T325140_3 113 TLKDAAIELS 122 789*999876 PP == domain 2 score: 39.9 bits; conditional E-value: 1.3e-14 KRAB 14 eEWelLdpaQreLYrdVMlEnyr 36 +EWe+L+paQ++LYrdVMlEn + T325140_3 124 KEWECLNPAQWNLYRDVMLENSE 146 5********************76 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 84 (0.00515148); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.48 # Mc/sec: 1037.05 // Query: T169171_1 [L=357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 2042.63 // Query: T169171_2 [L=357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 1856.94 // Query: T169171_3 [L=356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 1851.74 // Query: T183243_1 [L=4607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.66 # Mc/sec: 19969.46 // Query: T183243_2 [L=4607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.68 # Mc/sec: 19382.12 // Query: T183243_3 [L=4606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.88 # Mc/sec: 14973.84 // Query: T111717_1 [L=6392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.1 1.6 0.19 11.5 1.6 1.1 1 Sec8_exocyst Sec8 exocyst complex component specific domain Domain annotation for each model (and alignments): >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 1.6 1.1e-05 0.19 62 120 .. 6067 6125 .. 6062 6127 .. 0.92 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.1e-05 Sec8_exocyst 62 ehyqaFnssigsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyk 120 e + Fn+ + +k + i+e ++ +++lK+sl e ++ l + +k ++el++rs++ + T111717_1 6067 EQWENFNKETENAKKYQTEIMELKNMITALKKSLDEGNSRLDQAEKRISELKERSLEIN 6125 66789**************************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 772 (0.0473445); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.00u 0.55s 00:00:03.55 Elapsed: 00:00:01.04 # Mc/sec: 17583.10 // Query: T111717_2 [L=6391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 17.5 3.8 0.0015 17.3 2.2 1.7 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 2.2 9.2e-08 0.0015 211 259 .. 6166 6214 .. 6158 6215 .. 0.92 2 ? -1.4 0.0 0.045 7.3e+02 292 332 .. 6241 6282 .. 6239 6285 .. 0.86 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 9.2e-08 HHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 211 ilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 i+++i en +l k+++ +iqe+++ Pn+ +sk ++r i ++++k++ T111717_2 6166 IFKEITVENSSDLWKKMDTQIQEAQKIPNKMNSKTFTARDIKIKLSKTK 6214 89*****************************************998875 PP == domain 2 score: -1.4 bits; conditional E-value: 0.045 HHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEES CS Transposase_22 292 lkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfi 332 l +rew d++++l k+ + + P kls+ + e f+ T111717_2 6241 LANQREWDDILKVLTFLKLPSKNTVPGkKLSFRNEDERHTFQ 6282 5678***************99999996369**9999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.91u 0.38s 00:00:02.29 Elapsed: 00:00:00.77 # Mc/sec: 23744.89 // Query: T111717_3 [L=6391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.39s 00:00:02.52 Elapsed: 00:00:00.83 # Mc/sec: 22028.39 // Query: T051784_1 [L=2287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.82 # Mc/sec: 7978.92 // Query: T051784_2 [L=2287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.77 # Mc/sec: 8497.04 // Query: T051784_3 [L=2286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.61 # Mc/sec: 10721.08 // Query: T124824_1 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.74 # Mc/sec: 5048.98 // Query: T124824_2 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 6124.99 // Query: T124824_3 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 5258.29 // Query: T051540_1 [L=4585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0051 16.5 6.3 0.51 10.1 1.1 2.4 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.1 3.1e-05 0.51 9 39 .. 111 141 .. 110 142 .. 0.70 2 ! 9.8 0.7 3.9e-05 0.63 3 40 .] 140 177 .. 139 180 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.1e-05 Pentapeptide_2 9 GsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 Gs+ tG++ +Gs+ tGs +Gs+ tG + tG T051540_1 111 GSVATGTVAMGSVATGSVATGSVATGTVATG 141 7777777777777777777777777777776 PP == domain 2 score: 9.8 bits; conditional E-value: 3.9e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntGs 40 tGs+ +G++ tG++ +G++ tGs Gs+ Gs tGs T051540_1 140 TGSVATGTVATGSVATGTVATGSVARGSVARGSMATGS 177 78888888888888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.75 # Mc/sec: 17489.21 // Query: T051540_2 [L=4585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 38 (0.00233043); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.43s 00:00:01.94 Elapsed: 00:00:00.76 # Mc/sec: 17259.09 // Query: T051540_3 [L=4584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.35s 00:00:01.96 Elapsed: 00:00:00.80 # Mc/sec: 16392.56 // Query: T143264_1 [L=2215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 8801.03 // Query: T143264_2 [L=2215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.75 # Mc/sec: 8448.98 // Query: T143264_3 [L=2214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.5 6.7 9.4 2.2 8.0 0.0 3.1 3 Coilin_N Coilin N-terminus Domain annotation for each model (and alignments): >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.0 0.00013 2.2 84 114 .. 838 868 .. 744 870 .. 0.82 2 ? 2.1 0.0 0.0088 1.4e+02 3 33 .. 937 966 .. 936 968 .. 0.90 3 ? -1.7 3.7 0.13 2.1e+03 106 133 .. 1268 1295 .. 1251 1301 .. 0.59 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00013 Coilin_N 84 leaqesededsresssksasttkqkkkkkre 114 +++ +s +++r++s+k+++++k++kkkkre T143264_3 838 SRDYSSLGNRARHCSKKKKKKKKKSKKKKRE 868 4455566666777777766666666666665 PP == domain 2 score: 2.1 bits; conditional E-value: 0.0088 Coilin_N 3 lrlvFdderpeglakcwllvdvesakvvkdL 33 l++ F ++++ + ++cw + +++v ++ T143264_3 937 LSKSFVRPPQ-KPSRCWCHASCTACRTVSQI 966 6788999999.99***************986 PP == domain 3 score: -1.7 bits; conditional E-value: 0.13 Coilin_N 106 kqkkkkkrekkqeeqdeqkasqaakdkk 133 + +kkk++ + ee++ +k+++++++ + T143264_3 1268 DFASKKKKKDSLEEERPEKNQRRNDQAH 1295 3345555555566666666666665544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 8676.54 // Query: T019816_1 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 3977.92 // Query: T019816_2 [L=875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.67 # Mc/sec: 3736.16 // Query: T019816_3 [L=875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 3736.16 // Query: T315381_1 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.017 15.0 2.3 0.07 13.0 2.3 2.1 1 DZR Double zinc ribbon Domain annotation for each model (and alignments): >> DZR Double zinc ribbon # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 2.3 4.3e-06 0.07 28 49 .] 274 295 .. 246 295 .. 0.85 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 4.3e-06 DZR 28 edrCpsCgekvdpearfCpeCG 49 +++C+sC+ +v+ +r C +CG T315381_1 274 NTNCMSCTGPVSRSSRNCYHCG 295 789******************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 2203.27 // Query: T315381_2 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.72 # Mc/sec: 2046.29 // Query: T315381_3 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 2415.29 // Query: T019830_1 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 7412.15 // Query: T019830_2 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.72 # Mc/sec: 5662.06 // Query: T019830_3 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 5990.91 // Query: T164827_1 [L=2997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.79 # Mc/sec: 10853.05 // Query: T164827_2 [L=2996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.74 # Mc/sec: 11582.50 // Query: T164827_3 [L=2996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.77 # Mc/sec: 11131.23 // Query: T125906_1 [L=1799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.78 # Mc/sec: 6598.25 // Query: T125906_2 [L=1799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 7797.93 // Query: T125906_3 [L=1798] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1798 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.70 # Mc/sec: 7348.25 // Query: T265516_1 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-06 26.6 0.6 5.4e-06 25.5 0.6 1.6 1 IN_DBD_C Integrase DNA binding domain 0.0048 17.0 0.0 0.0098 16.0 0.0 1.5 1 rve Integrase core domain Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.6 6.6e-10 5.4e-06 5 48 .. 1168 1210 .. 1166 1212 .. 0.88 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 6.6e-10 EEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 v wk++ + W ++++grG++cv P d + ++wvP R ++ T265516_1 1168 VLWKNSQINTWVS-GTIITWGRGYACVSPGDHQFPVWVPTRRLK 1210 6688888888874.689************************987 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 1.2e-06 0.0098 67 118 .. 1060 1111 .. 1049 1112 .. 0.89 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.2e-06 rve 67 pervlsDngseytskafreflae.lgirvsftrpgrpqdnGkvErfnrtlkde 118 p + +Dn + y+skaf ++ + +gi++ + ++p +++vEr n tlk++ T265516_1 1060 PYQIKTDNTPGYVSKAF-DLSMQ*WGISHITRILYNPLGQAVVERANNTLKTQ 1111 77899********9999.5679999**************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 7023.98 // Query: T265516_2 [L=1644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-16 58.7 0.0 1e-15 58.1 0.0 1.2 1 RNase_H RNase H 8.9e-16 57.2 0.2 2.1e-15 56.0 0.2 1.6 1 RVT_thumb Reverse transcriptase thumb domain 3.5e-15 55.5 1.3 3.5e-15 55.5 1.3 2.0 2 Integrase_Zn Integrase Zinc binding domain 6.3e-08 32.2 0.0 1.4e-07 31.1 0.0 1.6 1 Gag_p10 Retroviral GAG p10 protein 0.0011 19.0 0.1 0.0026 17.8 0.1 1.6 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 0.0 3.1e-19 1e-15 2 139 .. 818 942 .. 817 946 .. 0.85 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 3.1e-19 .SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTH CS RNase_H 2 kavvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknk 101 +av+v+tDG + g a +v +++ + is+p++ ++++aEL+Avi+aL++ +++ni++DS Yvv+ +t+ ++++ ++ ++++ + + T265516_2 818 EAVIVFTDGF-----NDGNASYVGPTD--KLISTPYS---SAQKAELIAVITALQN--FLKTLNIVSDSAYVVH-ATKNIETTTIKHIDNSELA-SLFS- 902 789******9.....579999*99988..99999997...***************9..899*************.8888999888888665555.4666. PP HHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHH CS RNase_H 102 elaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAk 139 l++ ++ + ++ +++ h++ H++ + gN+ +D l++ T265516_2 903 RLQQVVR---QcRHPFYIAHIRSHTTLlgpiSAGNQKVDCLVS 942 7777773...23689***********9999966******9987 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.0 0.2 6.6e-19 2.1e-15 19 66 .] 626 673 .. 619 673 .. 0.97 Alignments for each domain: == domain 1 score: 56.0 bits; conditional E-value: 6.6e-19 HHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 19 kLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 kLlg+IN ++p+lgi t+ L++LF++L+Gds+l spr+LT+eA +Le T265516_2 626 KLLGNINYLKPTLGILTYALSNLFSMLHGDSNLRSPRTLTPEALLELE 673 9******************************************99985 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.7 2.3 7.4e+03 27 34 .. 905 912 .. 905 913 .. 0.85 2 ! 55.5 1.3 1.1e-18 3.5e-15 1 38 [] 948 985 .. 948 985 .. 0.98 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 2.3 Integrase_Zn 27 reIVqsCp 34 +++V++C T265516_2 905 QQVVRQCR 912 69*****7 PP == domain 2 score: 55.5 bits; conditional E-value: 1.1e-18 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCqq 38 A+e+H+l+H+Na++L++kF +t+++A+ IV sCp+Cq+ T265516_2 948 AQEFHNLTHVNAAGLKNKFAFTWKEAKLIVHSCPQCQV 985 9***********************************96 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.0 4.4e-11 1.4e-07 4 80 .. 456 531 .. 453 535 .. 0.84 Alignments for each domain: == domain 1 score: 31.1 bits; conditional E-value: 4.4e-11 Gag_p10 4 lFlkalkaLlkerGi.kvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklir 80 +l +k Llk++G+ s +++ ++++ vee cPWFpe+G ld+e+ ++v + + g+ +p++v+ ++ T265516_2 456 AYLCYIKLLLKQEGV*V-SMENMVTLFRAVEEHCPWFPEKGILDVEVRDHVCAKFR-ELVPTGNYVPITVWGNRPTVC 531 57778888899988332.6678999*******************************.9999*********97665555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 8.1e-07 0.0026 4 49 .. 1002 1045 .. 1000 1060 .. 0.85 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 8.1e-07 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdas 49 p++lwq+ vt+++ + g+ +y++v +d+ s++i+a + + e +a+ T265516_2 1002 PNDLWQMGVTHVS--SFGRLSYVHVSVDTISGFIWATCQTGEGTAH 1045 9************..55777*****************999995554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 8251.24 // Query: T265516_3 [L=1644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 8398.58 // Query: T229467_1 [L=2246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.64 # Mc/sec: 10039.73 // Query: T229467_2 [L=2245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 9585.92 // Query: T229467_3 [L=2245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.0 7.0 2.2 7.9 7.0 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 7.0 0.00014 2.2 1 25 [. 1545 1569 .. 1544 1571 .. 0.89 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00014 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T229467_3 1545 GRKEGREGGREEGRKEGRKEGRKEG 1569 7789999999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.64 # Mc/sec: 10035.26 // Query: T196973_1 [L=989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 4352.86 // Query: T196973_2 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 4486.51 // Query: T196973_3 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 4486.51 // Query: T007022_1 [L=4072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.73 # Mc/sec: 15957.94 // Query: T007022_2 [L=4072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-12 46.6 0.0 3.7e-12 46.1 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.1 0.0 2.3e-16 3.7e-12 170 241 .. 95 165 .. 91 166 .. 0.97 Alignments for each domain: == domain 1 score: 46.1 bits; conditional E-value: 2.3e-16 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS-HHHHHHHHHHHHHHHHHHCTS--EEEE--C CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeedeefeeiaevinaaleelfeegdkevtiiaEpG 241 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + +fee a+vi+aal + +e + v++iaEpG T007022_2 95 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGPKFEELARVISAALAQDLPE-ERGVKVIAEPG 165 789***********************************9********************8.9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.50u 0.38s 00:00:01.88 Elapsed: 00:00:00.84 # Mc/sec: 13868.21 // Query: T007022_3 [L=4071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-11 43.0 0.0 6e-11 42.3 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.0 3.7e-15 6e-11 60 106 .. 653 699 .. 641 703 .. 0.90 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 3.7e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007022_3 653 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 699 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.57u 0.42s 00:00:01.99 Elapsed: 00:00:00.80 # Mc/sec: 14558.05 // Query: T188423_1 [L=5470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6 6.8 5.6 11 6.0 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 5.6 0.00066 11 66 103 .. 2270 2307 .. 2267 2328 .. 0.62 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00066 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188423_1 2270 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2307 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1013 (0.0621244); expected 326.1 (0.02) Passed bias filter: 560 (0.0343432); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.20u 0.37s 00:00:03.57 Elapsed: 00:00:00.96 # Mc/sec: 16300.77 // Query: T188423_2 [L=5469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 984 (0.0603459); expected 326.1 (0.02) Passed bias filter: 450 (0.0275972); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.45s 00:00:03.28 Elapsed: 00:00:00.93 # Mc/sec: 16823.53 // Query: T188423_3 [L=5469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.28u 0.47s 00:00:02.75 Elapsed: 00:00:00.88 # Mc/sec: 17779.41 // Query: T369904_1 [L=3675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.73 # Mc/sec: 14402.12 // Query: T369904_2 [L=3675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.41s 00:00:01.66 Elapsed: 00:00:00.69 # Mc/sec: 15237.03 // Query: T369904_3 [L=3675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.55 # Mc/sec: 19115.55 // Query: T229061_1 [L=4618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-28 99.6 0.0 2.4e-28 98.9 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.9 0.0 1.4e-32 2.4e-28 49 157 .. 42 149 .. 39 201 .. 0.95 Alignments for each domain: == domain 1 score: 98.9 bits; conditional E-value: 1.4e-32 GAIN 49 lenlvktvsnLLdpenresWedlqqseqgtaatkLlrtleeyalllaqnmk..ylkpvtivtpNivlsvdvldtenskearlprfpskirgqrpkdleds 146 len+++ +s+LL+p +r++We++q+se+gta+ Llr le y++++a+n++ yl+p++ivt+N++l+vd++d+ n+++ar+p f i+++ p++le+s T229061_1 42 LENIIHSGSALLAPATRAAWEQIQRSEGGTAQ--LLRRLEGYFSNVARNVQwtYLQPFVIVTTNMILAVDIFDKFNFTGARVPWFDA-IHEEFPRELESS 138 69******************************..*****************************************************.9*********** PP GAIN 147 vklpkkalkes 157 +++p++++k++ T229061_1 139 ISFPANFFKPP 149 *********94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.57 # Mc/sec: 22778.13 // Query: T229061_2 [L=4618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:00.56 # Mc/sec: 23177.74 // Query: T229061_3 [L=4617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.55 # Mc/sec: 24015.37 // Query: T111375_1 [L=7083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0085 15.7 11.4 0.016 14.7 11.4 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 11.4 1e-06 0.016 1 38 [. 1346 1383 .. 1346 1384 .. 0.86 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1e-06 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeGfqlGlelGqilGv 38 G +eG +eG+++g eG+ eG++eG q G ++G+ G+ T111375_1 1346 GKKEGRKEGRKEGRKEGRKEGRKEGRQAGRQAGRQAGR 1383 67899999999999999999999999999999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7083 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.61 # Mc/sec: 33218.46 // Query: T111375_2 [L=7083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0033 17.0 9.2 0.0057 16.2 9.2 1.4 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 9.2 3.5e-07 0.0057 3 39 .] 1349 1385 .. 1348 1385 .. 0.94 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 3.5e-07 Yae1_N 3 reGlaeGkeqglqeGfdeGyqeGfqlGlelGqilGvl 39 +eG +eG+++g eG+ eG++ G q G ++G+ +G++ T111375_2 1349 KEGRKEGRKEGRKEGRKEGRKAGRQAGRQAGRQEGRA 1385 79********************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7083 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.63 # Mc/sec: 32163.90 // Query: T111375_3 [L=7082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 14.5 11.7 0.037 13.6 11.7 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 11.7 2.2e-06 0.037 1 34 [. 1348 1381 .. 1345 1386 .. 0.54 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.2e-06 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeGfqlGlelGq 34 G +eG +eG+++g eG+ eG+q G q G ++G+ T111375_3 1348 GRKEGRKEGRKEGRKEGRKEGRQAGRQAGRQAGR 1381 4455555555555555555555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:00.61 # Mc/sec: 33213.77 // Query: T130507_1 [L=607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 3617.76 // Query: T130507_2 [L=606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3538.09 // Query: T130507_3 [L=606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3538.09 // Query: T182538_1 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 1817.47 // Query: T182538_2 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1891.65 // Query: T182538_3 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.49 # Mc/sec: 1885.81 // Query: T343157_1 [L=7500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.37s 00:00:01.89 Elapsed: 00:00:00.61 # Mc/sec: 35174.14 // Query: T343157_2 [L=7500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.59 # Mc/sec: 36366.48 // Query: T343157_3 [L=7499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.33s 00:00:01.87 Elapsed: 00:00:00.59 # Mc/sec: 36361.63 // Query: T315763_1 [L=1696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 9703.94 // Query: T315763_2 [L=1696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 10108.27 // Query: T315763_3 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 8360.53 // Query: T202753_1 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 4256.11 // Query: T202753_2 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 4043.31 // Query: T202753_3 [L=847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 3908.26 // Query: T164582_1 [L=7183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.39s 00:00:02.39 Elapsed: 00:00:00.75 # Mc/sec: 27399.12 // Query: T164582_2 [L=7183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.25u 0.39s 00:00:02.64 Elapsed: 00:00:00.94 # Mc/sec: 21861.00 // Query: T164582_3 [L=7182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:00.70 # Mc/sec: 29352.12 // Query: T259005_1 [L=3051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.62 # Mc/sec: 14078.05 // Query: T259005_2 [L=3051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.57 # Mc/sec: 15048.95 // Query: T259005_3 [L=3050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 6.7 6.6 11 5.6 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 6.6 0.00067 11 6 41 .. 2060 2095 .. 2046 2106 .. 0.92 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.00067 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T259005_3 2060 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2095 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.71 # Mc/sec: 12289.48 // Query: T088761_1 [L=6549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.39s 00:00:02.50 Elapsed: 00:00:00.91 # Mc/sec: 20588.54 // Query: T088761_2 [L=6549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.39s 00:00:02.31 Elapsed: 00:00:00.69 # Mc/sec: 27153.01 // Query: T088761_3 [L=6549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.44s 00:00:02.38 Elapsed: 00:00:00.70 # Mc/sec: 26765.11 // Query: T273782_1 [L=4723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.42s 00:00:01.86 Elapsed: 00:00:00.73 # Mc/sec: 18509.18 // Query: T273782_2 [L=4722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.35s 00:00:01.84 Elapsed: 00:00:00.76 # Mc/sec: 17774.79 // Query: T273782_3 [L=4722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.72 # Mc/sec: 18762.28 // Query: T370042_1 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 7619.80 // Query: T370042_2 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 7059.52 // Query: T370042_3 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.78 # Mc/sec: 6154.45 // Query: T103261_1 [L=229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 1091.88 // Query: T103261_2 [L=228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44 # Mc/sec: 1482.43 // Query: T103261_3 [L=228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.47 # Mc/sec: 1387.81 // Query: T187956_1 [L=345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.3 10.0 5.1 0.35 9.7 5.1 1.1 1 PHO4 Phosphate transporter family 5.6 6.9 17.7 8.2 6.3 17.7 1.2 1 G3P_acyltransf Glycerol-3-phosphate acyltransferase Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 5.1 4.3e-05 0.35 115 169 .. 156 210 .. 134 298 .. 0.61 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 4.3e-05 PHO4 115 lvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvainaflil 169 l+kiv+++++ ++ +++ ++++++++++++++ ++ ++ ++++++v++++++++ T187956_1 156 LLKIVMMLMMMMMVVVMMVMMVVIVMMMMVMVMVMVVTVMVIMVVIVMVMLMMMV 210 5566555555444444443333333333333222222222222222222222221 PP >> G3P_acyltransf Glycerol-3-phosphate acyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 17.7 0.001 8.2 99 152 .. 162 213 .. 155 243 .. 0.45 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.001 G3P_acyltransf 99 aldlllaliallvfllvllltryvslaslvaalllpllllllllllllllallv 152 +l +++++++++v+++v++++ +v ++ +v++++ ++++++++++l++++l+v T187956_1 162 MLMMMMMVVVMMVMMVVIVMMMMVMVMVMVVTVM--VIMVVIVMVMLMMMVLIV 213 2221222222222222222222222222222221..222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1556 (0.095425); expected 326.1 (0.02) Passed bias filter: 325 (0.0199313); expected 326.1 (0.02) Passed Vit filter: 131 (0.00803385); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 1495.43 // Query: T187956_2 [L=345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 48 (0.0029437); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.54 # Mc/sec: 1827.75 // Query: T187956_3 [L=344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 1613.32 // Query: T370340_1 [L=3679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.39s 00:00:01.77 Elapsed: 00:00:00.72 # Mc/sec: 14618.05 // Query: T370340_2 [L=3679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.68 # Mc/sec: 15477.93 // Query: T370340_3 [L=3679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.70 # Mc/sec: 15035.71 // Query: T051577_1 [L=3995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.84 # Mc/sec: 13605.97 // Query: T051577_2 [L=3995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.41s 00:00:01.85 Elapsed: 00:00:00.78 # Mc/sec: 14652.58 // Query: T051577_3 [L=3995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.42s 00:00:01.98 Elapsed: 00:00:00.78 # Mc/sec: 14652.58 // Query: T156300_1 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 9416.90 // Query: T156300_2 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 609 (0.0373482); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 10272.98 // Query: T156300_3 [L=2369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 644 (0.0394947); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 9681.87 // Query: T381545_1 [L=661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 2701.44 // Query: T381545_2 [L=660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 3200.25 // Query: T381545_3 [L=660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 3562.54 // Query: T288551_1 [L=722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.06 13.8 20.7 0.2 12.2 1.9 3.5 3 SlyX SlyX 1.2 8.6 25.7 0.037 13.5 1.3 3.1 3 PspA_IM30 PspA/IM30 family 4 7.7 9.4 6.5 7.0 0.3 3.1 3 HrpB7 Bacterial type III secretion protein (HrpB7) Domain annotation for each model (and alignments): >> SlyX SlyX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 1.4 5.1e-05 0.28 4 56 .. 143 195 .. 141 202 .. 0.91 2 ? 0.5 2.6 0.16 8.5e+02 29 48 .. 206 227 .. 199 248 .. 0.53 3 ? 12.2 1.9 3.6e-05 0.2 5 53 .. 293 327 .. 291 340 .. 0.58 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 5.1e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS SlyX 4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessga 56 +le LEi l e+ ++L++++ + + ++l +q+ +l+e+l++++ ++++ T288551_1 143 QLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEAS 195 799*****************************************999888765 PP == domain 2 score: 0.5 bits; conditional E-value: 0.16 HHHHHHHHHHHHHHHHHT-..X CS SlyX 29 qqqqidrlqrqlrllaerl..k 48 +q i++lq+++++ +e+l + T288551_1 206 KDQCIQKLQAEVKASQEQLiaQ 227 4455555555555555555221 PP == domain 3 score: 12.2 bits; conditional E-value: 3.6e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS SlyX 5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 ++eL ++++ q + i +L +v+ e +++i++l++ + T288551_1 293 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEA--------------E 327 4556666666666666666666666666666654..............4 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 4.5 0.00053 2.9 93 134 .. 151 192 .. 141 195 .. 0.93 2 ? -1.4 5.0 0.24 1.3e+03 87 112 .. 222 247 .. 200 262 .. 0.57 3 ? 13.5 1.3 6.8e-06 0.037 100 135 .. 293 328 .. 286 330 .. 0.93 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00053 PspA_IM30 93 ikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134 +k++e++a+al++ql+ ++ + +l +q+++le k+e++ k T288551_1 151 LKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHK 192 5889********************************998766 PP == domain 2 score: -1.4 bits; conditional E-value: 0.24 PspA_IM30 87 realaeikslekqaealetqlaqqrs 112 + ++a++ ++ek++++l+t la +++ T288551_1 222 EQLIAQKLKHEKKVKKLQTDLATANA 247 33455555555666665555555554 PP == domain 3 score: 13.5 bits; conditional E-value: 6.8e-06 PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakk 135 + +l+tq++ q + + ql++ le+ e+ki++l+a++ T288551_1 293 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEAER 328 66899****************************997 PP >> HrpB7 Bacterial type III secretion protein (HrpB7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.3 0.0012 6.5 59 116 .. 129 186 .. 104 193 .. 0.83 2 ? 2.6 0.4 0.026 1.4e+02 12 54 .. 205 247 .. 199 265 .. 0.67 3 ? 2.5 0.2 0.028 1.5e+02 8 37 .. 298 327 .. 292 335 .. 0.61 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0012 HrpB7 59 lddlttgsspfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarki 116 ++l tg+ +f++a++ ++++ ++++e++ +a++++l +++ + ++v++ ++k+ T288551_1 129 KASLDTGQMAFTLAQLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKL 186 57889*******************************9998888888888887776666 PP == domain 2 score: 2.6 bits; conditional E-value: 0.026 HrpB7 12 rrarreerlraeleaaraalaaaeaalaaaqaqveaardavra 54 + + ++l+ae +a++++l a + +++++ ++++ + + ++a T288551_1 205 VKDQCIQKLQAEVKASQEQLIAQKLKHEKKVKKLQTDLATANA 247 5666667777777777777777776666666666665555444 PP == domain 3 score: 2.5 bits; conditional E-value: 0.028 HrpB7 8 tlverrarreerlraeleaaraalaaaeaa 37 t v +++ r +l++ le++ ++ +++ea+ T288551_1 298 TQVSLQTERITQLKEVLEEKERKIQQLEAE 327 445555566666666666666666666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1151 (0.0705875); expected 326.1 (0.02) Passed bias filter: 433 (0.0265546); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 2993.51 // Query: T288551_2 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 3125.24 // Query: T288551_3 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 3437.76 // Query: T227236_1 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 714 (0.0437876); expected 326.1 (0.02) Passed bias filter: 303 (0.0185821); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.73 # Mc/sec: 8245.46 // Query: T227236_2 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 762 (0.0467313); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.82 # Mc/sec: 7336.98 // Query: T227236_3 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 7916.22 // Query: T383191_1 [L=3719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.09 12.9 1.9 37 4.5 0.1 4.3 4 CC CC domain Domain annotation for each model (and alignments): >> CC CC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.0 0.058 9.5e+02 3 14 .. 826 837 .. 825 842 .. 0.89 2 ? 0.6 0.0 0.038 6.2e+02 4 14 .. 1095 1105 .. 1095 1110 .. 0.89 3 ? 2.1 0.0 0.012 2e+02 3 14 .. 1232 1243 .. 1232 1247 .. 0.91 4 ? 4.5 0.1 0.0023 37 4 14 .. 2685 2695 .. 2684 2700 .. 0.89 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.058 CC 3 stltCksptgpA 14 s+++C+ p+g A T383191_1 826 SNQGCQRPWGSA 837 799*******98 PP == domain 2 score: 0.6 bits; conditional E-value: 0.038 CC 4 tltCksptgpA 14 +++C++p+gpA T383191_1 1095 NQGCQGPLGPA 1105 689*******9 PP == domain 3 score: 2.1 bits; conditional E-value: 0.012 CC 3 stltCksptgpA 14 s+++C++p+gp T383191_1 1232 SNQGCQGPWGPV 1243 799*******95 PP == domain 4 score: 4.5 bits; conditional E-value: 0.0023 CC 4 tltCksptgpA 14 +++C+sp+gpA T383191_1 2685 NQGCQSPWGPA 2695 89********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.66 # Mc/sec: 16120.34 // Query: T383191_2 [L=3719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.78 # Mc/sec: 13640.29 // Query: T383191_3 [L=3718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.75 # Mc/sec: 14182.09 // Query: T320406_1 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 6766.48 // Query: T320406_2 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 6968.47 // Query: T320406_3 [L=1632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 7074.05 // Query: T369916_1 [L=3781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 551 (0.0337912); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.60 # Mc/sec: 18028.00 // Query: T369916_2 [L=3781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.73 # Mc/sec: 14817.53 // Query: T369916_3 [L=3781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 527 (0.0323194); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.27s 00:00:01.46 Elapsed: 00:00:00.63 # Mc/sec: 17169.52 // Query: T264229_1 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 8100.67 // Query: T264229_2 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-145 483.9 19.9 3.8e-145 483.2 19.9 1.3 1 Transposase_22 L1 transposable element 4e-08 33.4 0.0 9.2e-08 32.2 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 7.8e-05 22.7 6.0 0.00016 21.7 6.0 1.6 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0039 17.3 11.2 0.014 15.5 11.2 1.8 1 ATG16 Autophagy protein 16 (ATG16) 0.0093 16.4 6.4 0.022 15.2 6.4 1.6 1 Syntaxin-6_N Syntaxin 6, N-terminal ------ inclusion threshold ------ 0.022 14.5 0.0 0.059 13.1 0.0 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.031 14.3 3.4 0.025 14.6 1.3 1.9 1 GCN5L1 GCN5-like protein 1 (GCN5L1) 0.04 13.6 9.9 0.1 12.2 9.9 1.7 1 TBPIP Tat binding protein 1(TBP-1)-interacting pro 0.2 11.3 10.3 0.36 10.5 10.3 1.3 1 IncA IncA protein 0.3 10.3 11.2 0.54 9.5 11.2 1.3 1 APG6 Autophagy protein Apg6 0.41 11.0 7.1 1 9.8 7.1 1.7 1 Spectrin Spectrin repeat 0.44 10.7 9.0 2.2 8.4 9.0 2.3 1 KLRAQ Predicted coiled-coil domain-containing prot 0.95 10.1 5.8 0.78 10.3 1.4 2.4 2 DUF2203 Uncharacterized conserved protein (DUF2203) 2.9 8.3 7.4 40 4.6 7.4 2.6 1 DUF16 Protein of unknown function DUF16 10 6.2 14.4 19 5.3 14.4 1.4 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 483.2 19.9 3.5e-148 3.8e-145 1 368 [] 381 716 .. 381 716 .. 0.97 Alignments for each domain: == domain 1 score: 483.2 bits; conditional E-value: 3.5e-148 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX........ CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekeentekqlkiikekqen 94 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e++++++y++lke++++++ke++ ++k+++e + ek T264229_2 381 MGKKQ---SRKTGNSKNQSASPPPKEHSSSPAM--EQSWMENDFDELREEGFRRSNYSKLKEEVQTNGKEVKnFEKKLDEWLTRITS--AEK--- 465 79999...9************************..************************************99*******7777666..222... PP ..........XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS Transposase_22 95 tskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr 189 k+l+elkt ++el++e+ sls+r+d+leervsa+ede++e++re k+re r+k++eqslq+++d+vkr T264229_2 466 -------SLKDLMELKTMAQELRDECP------------------SLSNRCDQLEERVSAMEDEMNEMKREEKFREERIKRNEQSLQEMWDYVKR 535 .......3479****************..................************************************************** PP TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEE CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirlt 284 Pnl liGv+es+ e+++klen+l+ ii+enfPnl+++an +iqei+r P+ + s+ra++rh ivr+t v++k+k+l+a+rekGrvt k kPirlt T264229_2 536 PNLHLIGVPESDGENGTKLENTLQGIIQENFPNLARQANFQIQEIQRMPQTYFSRRATPRHRIVRFTTVEMKEKMLRAAREKGRVTHKRKPIRLT 630 *********************************************************************************************** PP E---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 285 adlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 adlsaetl+arrew+++++ lkek+fqPr++yPakls+i++ eik+f dk++lrd+++trPalk+llke ++er+++yq+l++++ T264229_2 631 ADLSAETLQARREWGPIFNSLKEKNFQPRISYPAKLSFISEEEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNQYQPLQKHA 716 ***********************************************************************************996 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.0 8.5e-11 9.2e-08 1 94 [. 751 899 .. 751 999 .. 0.75 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 8.5e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 lt Nvng ++ + + +la+++k++d+ v ++qE++ ++ ++l+ + ++ + ++++ gva+l+ + + + T264229_2 751 LTLNVNG----LNAPIKIHRLANWIKSQDPSVCCIQETHLTCRDTNRLKIkaWRKIYQANGKQKKAGVAILVLGKTDFKqtkikrdkeghylmvkg 842 699****....888999********************99998888777778844445555666666776666555533334667777777777777 PP .....................................EEEEEE-SS...-BEEEEEE CS .....................................xxxxxxxxx...xxxxxxxx RF Exo_endo_phos 78 .....................................vivlGDfNa...rlDrilas 94 i++GDfN+ +lDr + T264229_2 843 siqqeeltilniyapntgaprfikqvlsdlqrdldshTIIMGDFNTplsTLDRSTRH 899 7777799999999999999999999999999999999*********99955554333 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 6.0 1.5e-07 0.00016 6 100 .. 414 508 .. 410 511 .. 0.96 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 1.5e-07 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e +R +++++ +e+ ++ ++ +++l+e ++ ++ k+ + +++ k a+el++e +l+++ ++le++++++e+e++++ T264229_2 414 WMENDFDELREEGFRRSNYSKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKDLMELKTMAQELRDECPSLSNRCDQLEERVSAMEDEMNEM 508 7889****************************************************************************************986 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 11.2 1.3e-05 0.014 53 186 .. 382 507 .. 359 535 .. 0.79 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 1.3e-05 ATG16 53 sskaskksakeelasssqsnskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaleeklkdreeelrek 152 +k+s+k+ +++++s ++ +++++s++ + + + ++ el ++ g + +l+ee+q+ ++ k+ e++l+e +++++ e+ lkd l e+ T264229_2 382 GKKQSRKTGNSKNQS---ASPPPKEHSSSPAMEQSWMENDFDEL-REEGFRRSNYSKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKD----LMEL 473 112212111111122...34456677777777777778888887.999999999***********************************999....5789 PP ATG16 153 eklvqdlqDElqaLqlqlnqaEeklrklekENke 186 +++ q+l+DE +L + q+Ee+ +e+E +e T264229_2 474 KTMAQELRDECPSLSNRCDQLEERVSAMEDEMNE 507 99************************99999655 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 6.4 2e-05 0.022 3 91 .. 432 529 .. 431 535 .. 0.75 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2e-05 Syntaxin-6_N 3 FfevkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpsk....fkidekelsrrrafvee 90 + + keeVq k++++ e+ +++w +++ + ++s + el+ +eLr ++ s+++ ++Lee v+++e + ++ k +e+ ++r ++ ++e T264229_2 432 YSKLKEEVQtngKEVKNFEKKLDEWlTRITSAEKSlKDLMELKTMAQELRDECPSLSNRCDQLEERVSAMEDEMNEmkreEKFREERIKRNEQSLQE 528 667899999444579999999****6699999988989*****************************999885544001244445555555555554 PP Syntaxin-6_N 91 v 91 + T264229_2 529 M 529 4 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 5.4e-05 0.059 2 48 .. 850 894 .. 849 908 .. 0.78 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 5.4e-05 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWg 48 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + T264229_2 850 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTIIMGDFNTPLSTLD 894 7999***9999.777777778888888876.89*******9866555 PP >> GCN5L1 GCN5-like protein 1 (GCN5L1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 1.3 2.3e-05 0.025 48 106 .. 431 489 .. 427 497 .. 0.90 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 2.3e-05 GCN5L1 48 nqkklekeakalqaqvakfakqtdqWlalvesfnsaLkeiGDvenWaktiekDlksite 106 n kl +e+++ ++v++f+k+ d+Wl+ + s +++Lk++ +++ a+ + ++ s+++ T264229_2 431 NYSKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKDLMELKTMAQELRDECPSLSN 489 67899**************************************9999999999988776 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 9.9 9.5e-05 0.1 72 165 .. 437 534 .. 415 536 .. 0.67 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 9.5e-05 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeselt.teelleeiqelkkeveeieekLeslkesnkevskeei...ekvkkeykklkkewkkrk 165 ee++ +e+++ ++++ e + i ++ek lk+L + t +el++e +l + +++ ee++ +++++++e++ ee+ e++k++++ l+++w k T264229_2 437 EEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKDLMELKTmAQELRDECPSLSNRCDQLEERVSAMEDEMNEMKREEKfreERIKRNEQSLQEMWDYVK 534 33333334455555555555566666666666665533314678888888888888888888888888888888875454788888888888887665 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 10.3 0.00033 0.36 76 179 .. 409 529 .. 381 535 .. 0.69 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00033 IncA 76 e.......................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirel 149 + s+l+ee++ ++++ e++l++ +r+ + e+ lkdl e ++ q e s+ r++ lee++++++ e+ e+ T264229_2 409 AmeqswmendfdelreegfrrsnySKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKDLMELKTMAQelrDECPSLSNRCDQLEERVSAMEDEMNEM 508 2444555566666666777777778888999999999999999999988888888888888877777777555666777778888888888888888888 PP IncA 150 relsdlkeevqelrselerlqedlqrlqqk 179 +e++ + er +++ q lq++ T264229_2 509 K---------REEKFREERIKRNEQSLQEM 529 7.........44444444444445555544 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 11.2 0.00049 0.54 12 110 .. 433 525 .. 413 539 .. 0.57 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00049 APG6 12 eeldkeleelekerdayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalkle 110 ++l++e+++ ke +++e+ l++ ++ + + e++ k+l +l+ +el++e l + +++lee ++++e+e++e+++ee+ ++ + ++ T264229_2 433 SKLKEEVQTNGKEVKNFEKKLDEWLTRIT------SAEKSLKDLMELKTMAQELRDECPSLSNRCDQLEERVSAMEDEMNEMKREEKFREERIKRNEQS 525 33444444444444444444444444433......3445666666677777777777777777777777777777777777666665443333333333 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 7.1 0.00093 1 3 94 .. 446 535 .. 437 537 .. 0.89 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00093 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de + i+ +e+ l +dl + + +q+l +++ l + ++ +erv a ++ +++ e+++ +e+i+ + l+e W+ +k+ T264229_2 446 VKNFEKKLDEWLTRITSAEKSL--KDLMELKTMAQELRDECPSLSNRCDQLEERVSAMEDEMNEMKREEKFREERIKRNEQSLQEMWDYVKR 535 5689999999999999999999..6666677777888889999**********************9999******************99875 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 9.0 0.0021 2.2 28 84 .. 464 518 .. 429 532 .. 0.59 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0021 KLRAQ 28 eaelke..elkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkks 84 e++lk+ elk+ + + + E sL+ r +qLe rv+++ +e++e +++ k +++ T264229_2 464 EKSLKDlmELKTMA---QELRDECPSLSNRCDQLEERVSAMEDEMNEMKRE-EKFREER 518 33344311233333...33446899*********************87754.3333222 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.5 0.13 1.5e+02 38 79 .. 429 470 .. 373 472 .. 0.69 2 ? 10.3 1.4 0.00072 0.78 7 87 .. 462 544 .. 458 552 .. 0.82 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.13 DUF2203 38 eakaeaekseaaeleaeleeleaeieelveeieelGvevkdl 79 +++ ++ k+e +++ +e+++ e++++e++++i++ +kdl T264229_2 429 RSNYSKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKSLKDL 470 222222223367777778888888888888888877777776 PP == domain 2 score: 10.3 bits; conditional E-value: 0.00072 DUF2203 7 eAnalLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvevkdleaglvDFp 87 A++ L l el + +++lr+e +l+++ ++ +++ ++ e +e+++e+++ e++i++ + ++e+ vk + l+ p T264229_2 462 SAEKSLKDLMELKTMAQELRDECPSLSNRCDQLEERVSAMEdeMNEMKREEKFREERIKRNEQSLQEMWDYVKRPNLHLIGVP 544 6888899999999999999999999999888888887666667999*******************999988888887777665 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 7.4 0.037 40 32 88 .. 442 529 .. 415 539 .. 0.77 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.037 BHHHHHHHHHHHH..................................HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHH CS DUF16 32 nkqrLkkieakvd...............................klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleli 88 n +++k++e+k+d +l ++ ++le+ v++ +++++e+k e k ++e++++ +++l+ + T264229_2 442 NGKEVKNFEKKLDewltritsaekslkdlmelktmaqelrdecpSLSNRCDQLEERVSAMEDEMNEMKREEKFREERIKRNEQSLQEM 529 555555555555556666666666666777777777788888889999******************************9999999866 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 14.4 0.017 19 44 152 .. 416 534 .. 409 537 .. 0.70 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.017 Jnk-SapK_ap_N 44 rneeeeaeleelreel.eqLetekerekelrkraeeeleeiedqweeerk......elqekveqleeenrelelkaknaadqlsrleekeaelkke 132 +n+ e ++e r+ + ++L++e + ++ k++e++l e + + + +k el+++ ++l++e+ l+ +++++++++s++e++ +e+k+e T264229_2 416 ENDFDELREEGFRRSNySKLKEEVQTNGKEVKNFEKKLDEWLTRITSAEKslkdlmELKTMAQELRDECPSLSNRCDQLEERVSAMEDEMNEMKRE 511 55555555555554432678888888888888888776666555554444111122677888999999**************************99 PP Jnk-SapK_ap_N 133 ysklhe...retellkklkelve 152 ++ +e r ++ l+++ ++v+ T264229_2 512 EKFREErikRNEQSLQEMWDYVK 534 99999966666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1181 (0.0724273); expected 326.1 (0.02) Passed bias filter: 437 (0.0268); expected 326.1 (0.02) Passed Vit filter: 114 (0.00699129); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 1.06u 0.28s 00:00:01.34 Elapsed: 00:00:00.60 # Mc/sec: 7690.86 // Query: T264229_3 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 7821.22 // Query: T179989_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-83 269.5 113.6 9.4e-09 35.2 1.8 18.6 18 zf-H2C2_2 Zinc-finger double domain 3.6e-64 209.7 130.6 6.8e-06 26.1 3.6 16.8 16 zf-C2H2 Zinc finger, C2H2 type 6.5e-29 98.0 134.5 0.0073 16.9 2.0 16.8 17 zf-C2H2_4 C2H2-type zinc finger 6.1e-25 86.5 0.7 1.5e-24 85.3 0.7 1.7 1 KRAB KRAB box 6.5e-08 32.2 100.5 0.14 12.0 0.5 15.7 15 zf-C2H2_6 C2H2-type zinc finger 2.6e-06 28.0 63.2 0.17 12.5 1.2 7.6 7 zinc_ribbon_15 zinc-ribbon family 5.6e-06 26.2 74.2 0.061 13.3 2.6 9.9 11 Zn-ribbon_8 Zinc ribbon domain ------ inclusion threshold ------ 0.013 15.6 71.8 0.14 12.3 4.1 10.6 12 C1_4 TFIIH C1-like domain Domain annotation for each model (and alignments): >> zf-H2C2_2 Zinc-finger double domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 3.6 7.3e+03 8 25 .. 193 223 .. 185 224 .. 0.69 2 ! 13.2 0.1 4.3e-05 0.087 3 25 .. 253 275 .. 251 276 .. 0.88 3 ! 12.6 0.3 6.4e-05 0.13 2 24 .. 280 302 .. 279 303 .. 0.91 4 ! 28.6 0.6 5.7e-10 1.2e-06 5 25 .. 311 331 .. 308 332 .. 0.94 5 ! 19.5 4.5 4.1e-07 0.00085 2 25 .. 336 359 .. 336 360 .. 0.96 6 ! 26.9 2.4 1.9e-09 3.9e-06 2 26 .] 364 388 .. 363 388 .. 0.95 7 ! 18.1 0.3 1.2e-06 0.0024 2 24 .. 392 414 .. 391 415 .. 0.93 8 ! 20.1 0.1 2.8e-07 0.00057 1 24 [. 419 442 .. 419 444 .. 0.92 9 ! 35.2 1.8 4.6e-12 9.4e-09 2 25 .. 448 471 .. 447 471 .. 0.95 10 ! 19.0 0.2 6e-07 0.0012 2 25 .. 476 499 .. 476 499 .. 0.94 11 ! 33.0 0.4 2.3e-11 4.7e-08 3 25 .. 505 527 .. 503 528 .. 0.91 12 ! 9.2 3.6 0.00078 1.6 1 25 [. 531 555 .. 531 556 .. 0.83 13 ! 27.6 0.2 1.1e-09 2.3e-06 5 25 .. 563 583 .. 559 584 .. 0.93 14 ! 24.4 0.3 1.2e-08 2.4e-05 1 24 [. 587 610 .. 587 611 .. 0.96 15 ! 23.2 3.4 2.9e-08 6e-05 5 25 .. 619 639 .. 619 640 .. 0.96 16 ! 21.3 1.2 1.2e-07 0.00024 5 24 .. 647 666 .. 643 668 .. 0.90 17 ? 2.6 0.2 0.098 2e+02 3 13 .. 673 683 .. 671 684 .. 0.84 18 ? -0.4 0.0 0.87 1.8e+03 6 15 .. 755 764 .. 751 765 .. 0.84 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 3.6 zf-H2C2_2 8 kHtgekp.y............eCplCdkaFk 25 kH +++ y eC dk+F T179989_1 193 KHLNPNLeYfiqnrsyarnegECNGYDKVFL 223 6777764444666666777778988889886 PP == domain 2 score: 13.2 bits; conditional E-value: 4.3e-05 zf-H2C2_2 3 rrHlrkHtgekpyeCplCdkaFk 25 +H ++ + ek y C+ C+kaF+ T179989_1 253 IKHWKTQKREKQYDCSDCGKAFS 275 578889999*************8 PP == domain 3 score: 12.6 bits; conditional E-value: 6.4e-05 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaF 24 L +H r+ +gekpy C+ C aF T179989_1 280 LFKHQRTQRGEKPYGCSRCQTAF 302 779****************9888 PP == domain 4 score: 28.6 bits; conditional E-value: 5.7e-10 zf-H2C2_2 5 HlrkHtgekpyeCplCdkaFk 25 H r+Ht ekpyeC +C+kaF+ T179989_1 311 HERTHTEEKPYECNKCGKAFT 331 ********************7 PP == domain 5 score: 19.5 bits; conditional E-value: 4.1e-07 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L++H r+Htgek +eC C k F+ T179989_1 336 LNKHQRTHTGEKCFECHTCQKGFS 359 89*******************996 PP == domain 6 score: 26.9 bits; conditional E-value: 1.9e-09 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFkt 26 L+ H r+Htgekpy C++C k+F++ T179989_1 364 LTFHQRTHTGEKPYGCSKCQKSFSN 388 889********************97 PP == domain 7 score: 18.1 bits; conditional E-value: 1.2e-06 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaF 24 L+ H r Ht ekpy C++C+k+F T179989_1 392 LMIHQRAHTEEKPYGCDECGKTF 414 6679******************9 PP == domain 8 score: 20.1 bits; conditional E-value: 2.8e-07 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 nL H + Htgek + C +C+kaF T179989_1 419 NLILHQKIHTGEKSHGCNECGKAF 442 6778*******************9 PP == domain 9 score: 35.2 bits; conditional E-value: 4.6e-12 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L+rH r+Htgekpy+C++C+k F+ T179989_1 448 LSRHQRTHTGEKPYHCSECGKGFS 471 9********************995 PP == domain 10 score: 19.0 bits; conditional E-value: 6e-07 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L+ H r+H+gekpy C +C+k F+ T179989_1 476 LNTHWRTHMGEKPYGCNECGKMFS 499 78899****************995 PP == domain 11 score: 33.0 bits; conditional E-value: 2.3e-11 zf-H2C2_2 3 rrHlrkHtgekpyeCplCdkaFk 25 H r+HtgekpyeC+ C k+F+ T179989_1 505 ILHQRTHTGEKPYECSQCQKTFS 527 56********************8 PP == domain 12 score: 9.2 bits; conditional E-value: 0.00078 zf-H2C2_2 1 nLrrHlrkHtgekpy.eCplCdkaFk 25 +L+ H r+Htgek eC +C+kaF+ T179989_1 531 HLNIHQRSHTGEK-P*ECGECHKAFS 555 6899********7.366999999997 PP == domain 13 score: 27.6 bits; conditional E-value: 1.1e-09 zf-H2C2_2 5 HlrkHtgekpyeCplCdkaFk 25 H r H gekpyeC +C+k+F+ T179989_1 563 HQRIHSGEKPYECLECGKTFS 583 ********************8 PP == domain 14 score: 24.4 bits; conditional E-value: 1.2e-08 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 +L+ H r Htgek y C++C+k+F T179989_1 587 SLTTHQRIHTGEKSYGCSECGKTF 610 5899*******************9 PP == domain 15 score: 23.2 bits; conditional E-value: 2.9e-08 zf-H2C2_2 5 HlrkHtgekpyeCplCdkaFk 25 H ++Htgek +eC++C k+F+ T179989_1 619 HQKTHTGEKLHECSKCQKSFA 639 9*******************7 PP == domain 16 score: 21.3 bits; conditional E-value: 1.2e-07 zf-H2C2_2 5 HlrkHtgekpyeCplCdkaF 24 H r+H gekpyeC +C k+F T179989_1 647 HQRTHIGEKPYECTECWKTF 666 ****************9998 PP == domain 17 score: 2.6 bits; conditional E-value: 0.098 zf-H2C2_2 3 rrHlrkHtgek 13 H ++H+gek T179989_1 673 ILHQKTHKGEK 683 56********8 PP == domain 18 score: -0.4 bits; conditional E-value: 0.87 zf-H2C2_2 6 lrkHtgekpy 15 r+Htg ++y T179989_1 755 QREHTGRNIY 764 599***9988 PP >> zf-C2H2 Zinc finger, C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.0 0.2 0.0081 17 8 22 .. 244 258 .. 243 258 .. 0.91 2 ! 21.1 0.4 1.4e-07 0.00028 1 22 [. 265 286 .. 265 286 .. 0.96 3 ? 5.1 2.0 0.016 33 3 23 .] 295 315 .. 293 315 .. 0.97 4 ! 26.1 3.6 3.3e-09 6.8e-06 1 23 [] 321 343 .. 321 343 .. 0.99 5 ! 15.7 4.6 7e-06 0.014 1 23 [] 349 371 .. 349 371 .. 0.98 6 ! 21.3 1.2 1.1e-07 0.00023 3 23 .] 379 399 .. 377 399 .. 0.97 7 ! 17.1 0.2 2.4e-06 0.0049 3 23 .] 407 427 .. 405 427 .. 0.97 8 ! 23.4 0.7 2.4e-08 4.9e-05 3 23 .] 435 455 .. 435 455 .. 0.99 9 ! 18.2 2.3 1.1e-06 0.0022 1 23 [] 461 483 .. 461 483 .. 0.98 10 ! 17.6 0.5 1.7e-06 0.0034 3 23 .] 491 511 .. 489 511 .. 0.98 11 ! 23.3 3.9 2.6e-08 5.4e-05 1 23 [] 517 539 .. 517 539 .. 0.99 12 ! 21.4 1.1 1.1e-07 0.00022 2 23 .] 546 567 .. 546 567 .. 0.97 13 ! 24.7 1.5 9.6e-09 1.9e-05 1 23 [] 573 595 .. 573 595 .. 0.98 14 ! 7.0 0.2 0.0038 7.7 3 16 .. 603 616 .. 601 617 .. 0.89 15 ! 21.8 4.4 7.8e-08 0.00016 1 23 [] 629 651 .. 629 651 .. 0.97 16 ! 18.4 1.9 9.7e-07 0.002 1 23 [] 657 679 .. 657 679 .. 0.99 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0081 zf-C2H2 8 ksFkrksnLkrHirt 22 k F++ks+L +H +t T179989_1 244 KAFSHKSQLIKHWKT 258 79**********875 PP == domain 2 score: 21.1 bits; conditional E-value: 1.4e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirt 22 y C+dCgk F++k +L +H+rt T179989_1 265 YDCSDCGKAFSQKLDLFKHQRT 286 89******************97 PP == domain 3 score: 5.1 bits; conditional E-value: 0.016 zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C+ C F+ ks L H rtH T179989_1 295 CSRCQTAFRWKSCLILHERTH 315 99******************9 PP == domain 4 score: 26.1 bits; conditional E-value: 3.3e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F++ks L++H+rtH T179989_1 321 YECNKCGKAFTDKSCLNKHQRTH 343 99********************9 PP == domain 5 score: 15.7 bits; conditional E-value: 7e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ++C+ C k F++ks L+ H+rtH T179989_1 349 FECHTCQKGFSDKSKLTFHQRTH 371 89********************9 PP == domain 6 score: 21.3 bits; conditional E-value: 1.1e-07 zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C++C ksF++ks+L+ H+r H T179989_1 379 CSKCQKSFSNKSQLMIHQRAH 399 *******************99 PP == domain 7 score: 17.1 bits; conditional E-value: 2.4e-06 zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C++Cgk+F+ k nL H+++H T179989_1 407 CDECGKTFPLKFNLILHQKIH 427 *******************99 PP == domain 8 score: 23.4 bits; conditional E-value: 2.4e-08 zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C++Cgk F ++s+L rH+rtH T179989_1 435 CNECGKAFIQRSELSRHQRTH 455 ********************9 PP == domain 9 score: 18.2 bits; conditional E-value: 1.1e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y C++Cgk F+ ks L++H rtH T179989_1 461 YHCSECGKGFSVKSFLNTHWRTH 483 89********************9 PP == domain 10 score: 17.6 bits; conditional E-value: 1.7e-06 zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C++Cgk+F+ k +L H+rtH T179989_1 491 CNECGKMFSIKFSLILHQRTH 511 ********************9 PP == domain 11 score: 23.3 bits; conditional E-value: 2.6e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C+ C k+F++ks+L+ H+r+H T179989_1 517 YECSQCQKTFSQKSHLNIHQRSH 539 99********************9 PP == domain 12 score: 21.4 bits; conditional E-value: 1.1e-07 zf-C2H2 2 kCpdCgksFkrksnLkrHirtH 23 +C++C+k F+rks L H+r+H T179989_1 546 ECGECHKAFSRKSYLLIHQRIH 567 5********************9 PP == domain 13 score: 24.7 bits; conditional E-value: 9.6e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C +Cgk+F+rk +L++H+r+H T179989_1 573 YECLECGKTFSRKFSLTTHQRIH 595 99********************9 PP == domain 14 score: 7.0 bits; conditional E-value: 0.0038 zf-C2H2 3 CpdCgksFkrksnL 16 C++Cgk+F+ k +L T179989_1 603 CSECGKTFPVKFSL 616 ********998887 PP == domain 15 score: 21.8 bits; conditional E-value: 7.8e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ++C++C ksF +ks+L H+rtH T179989_1 629 HECSKCQKSFAQKSHLIIHQRTH 651 78********************9 PP == domain 16 score: 18.4 bits; conditional E-value: 9.7e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C k+F rk +L H++tH T179989_1 657 YECTECWKTFFRKFSLILHQKTH 679 99********************9 PP >> zf-C2H2_4 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.8 8 1.6e+04 12 23 .. 161 172 .. 160 172 .. 0.72 2 ? 2.6 0.3 0.14 2.8e+02 9 23 .. 245 259 .. 243 260 .. 0.85 3 ! 12.3 0.3 0.00011 0.23 3 22 .. 267 286 .. 265 288 .. 0.91 4 ? 3.0 2.0 0.11 2.2e+02 2 23 .. 294 315 .. 293 316 .. 0.86 5 ! 16.5 2.6 4.8e-06 0.0098 1 23 [. 321 343 .. 321 344 .. 0.97 6 ! 12.3 3.5 0.00011 0.22 1 23 [. 349 371 .. 349 372 .. 0.96 7 ! 15.7 1.0 8.9e-06 0.018 2 23 .. 378 399 .. 377 400 .. 0.94 8 ! 10.0 0.2 0.00059 1.2 2 23 .. 406 427 .. 405 428 .. 0.92 9 ! 13.7 0.9 3.8e-05 0.077 3 23 .. 435 455 .. 433 456 .. 0.95 10 ! 16.9 2.0 3.6e-06 0.0073 1 23 [. 461 483 .. 461 484 .. 0.86 11 ! 10.7 0.4 0.00035 0.71 2 23 .. 490 511 .. 489 512 .. 0.93 12 ! 16.7 3.1 4.3e-06 0.0088 1 23 [. 517 539 .. 517 540 .. 0.95 13 ! 10.6 1.2 0.00039 0.8 2 23 .. 546 567 .. 546 568 .. 0.93 14 ! 15.9 1.1 7.8e-06 0.016 1 23 [. 573 595 .. 573 596 .. 0.96 15 ! 7.4 0.7 0.0042 8.6 2 23 .. 602 623 .. 601 624 .. 0.88 16 ! 12.9 2.9 7.1e-05 0.15 1 23 [. 629 651 .. 629 652 .. 0.96 17 ! 7.2 2.3 0.0048 9.7 1 23 [. 657 679 .. 657 680 .. 0.94 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 8 zf-C2H2_4 12 skkaLlrHlkth 23 s +++ rH k h T179989_1 161 SLETMDRHHKYH 172 667788888877 PP == domain 2 score: 2.6 bits; conditional E-value: 0.14 zf-C2H2_4 9 sFsskkaLlrHlkth 23 Fs k++L +H+kt+ T179989_1 245 AFSHKSQLIKHWKTQ 259 6988999******86 PP == domain 3 score: 12.3 bits; conditional E-value: 0.00011 zf-C2H2_4 3 CpiCgksFsskkaLlrHlkt 22 C+ Cgk Fs k +L +H +t T179989_1 267 CSDCGKAFSQKLDLFKHQRT 286 *****************998 PP == domain 4 score: 3.0 bits; conditional E-value: 0.11 zf-C2H2_4 2 kCpiCgksFsskka.LlrHlkth 23 C+ C++ F ++k+ L H +th T179989_1 294 GCSRCQTAF-RWKScLILHERTH 315 6********.88886788***99 PP == domain 5 score: 16.5 bits; conditional E-value: 4.8e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F++k+ L++H +th T179989_1 321 YECNKCGKAFTDKSCLNKHQRTH 343 89********************9 PP == domain 6 score: 12.3 bits; conditional E-value: 0.00011 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 f+C+ C+k Fs+k++L H +th T179989_1 349 FECHTCQKGFSDKSKLTFHQRTH 371 89********************9 PP == domain 7 score: 15.7 bits; conditional E-value: 8.9e-06 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 C+ C+ksFs+k++L H ++h T179989_1 378 GCSKCQKSFSNKSQLMIHQRAH 399 6*******************99 PP == domain 8 score: 10.0 bits; conditional E-value: 0.00059 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 C+ Cgk+F+ k +L H k h T179989_1 406 GCDECGKTFPLKFNLILHQKIH 427 6*****************9998 PP == domain 9 score: 13.7 bits; conditional E-value: 3.8e-05 zf-C2H2_4 3 CpiCgksFsskkaLlrHlkth 23 C Cgk F +++L+rH +th T179989_1 435 CNECGKAFIQRSELSRHQRTH 455 ********************9 PP == domain 10 score: 16.9 bits; conditional E-value: 3.6e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 + C+ Cgk Fs k+ L++H++th T179989_1 461 YHCSECGKGFSVKSFLNTHWRTH 483 89********66666888****9 PP == domain 11 score: 10.7 bits; conditional E-value: 0.00035 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 C Cgk Fs k +L H +th T179989_1 490 GCNECGKMFSIKFSLILHQRTH 511 6********************9 PP == domain 12 score: 16.7 bits; conditional E-value: 4.3e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C++C+k+Fs k++L+ H ++h T179989_1 517 YECSQCQKTFSQKSHLNIHQRSH 539 89********************9 PP == domain 13 score: 10.6 bits; conditional E-value: 0.00039 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 +C C+k Fs+k+ Ll H + h T179989_1 546 ECGECHKAFSRKSYLLIHQRIH 567 5********99999*****999 PP == domain 14 score: 15.9 bits; conditional E-value: 7.8e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk+Fs+k +L +H + h T179989_1 573 YECLECGKTFSRKFSLTTHQRIH 595 89******************998 PP == domain 15 score: 7.4 bits; conditional E-value: 0.0042 zf-C2H2_4 2 kCpiCgksFsskkaLlr.Hlkth 23 C+ Cgk+F+ k + l H kth T179989_1 602 GCSECGKTFPVKFS-LV*HQKTH 623 6***********99.88888888 PP == domain 16 score: 12.9 bits; conditional E-value: 7.1e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ C+ksF+ k++L H +th T179989_1 629 HECSKCQKSFAQKSHLIIHQRTH 651 68********************9 PP == domain 17 score: 7.2 bits; conditional E-value: 0.0048 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ C k+F +k +L H kth T179989_1 657 YECTECWKTFFRKFSLILHQKTH 679 89****99999************ PP >> KRAB KRAB box # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.3 0.7 7.1e-28 1.5e-24 1 42 [] 71 112 .. 71 112 .. 0.98 Alignments for each domain: == domain 1 score: 85.3 bits; conditional E-value: 7.1e-28 KRAB 1 sVtFeDVaVdFtqeEWelLdpaQreLYrdVMlEnyrnlvSlG 42 s++F+DVaV Ft+eEW+lLdp Q++LY+dVMlEny+nlvSlG T179989_1 71 SLSFKDVAVGFTWEEWQLLDPVQKNLYQDVMLENYSNLVSLG 112 689**************************************9 PP >> zf-C2H2_6 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.3 0.048 99 2 13 .. 265 276 .. 264 289 .. 0.76 2 ? -1.9 0.2 1.6 3.3e+03 2 11 .. 293 302 .. 292 303 .. 0.76 3 ! 6.6 1.8 0.0033 6.7 2 24 .. 321 343 .. 320 346 .. 0.79 4 ? 1.6 3.3 0.12 2.5e+02 2 12 .. 349 359 .. 348 372 .. 0.90 5 ! 5.5 0.4 0.0078 16 2 12 .. 377 387 .. 376 402 .. 0.77 6 ! 10.7 0.1 0.00018 0.37 2 12 .. 405 415 .. 404 416 .. 0.92 7 ! 5.2 0.3 0.0094 19 2 11 .. 433 442 .. 432 456 .. 0.89 8 ! 6.6 4.1 0.0035 7.1 2 26 .. 461 485 .. 460 486 .. 0.81 9 ! 5.3 0.2 0.0087 18 2 22 .. 489 509 .. 488 514 .. 0.72 10 ! 9.3 1.9 0.00048 0.98 2 24 .. 517 539 .. 516 542 .. 0.79 11 ? 2.7 0.5 0.056 1.1e+02 3 12 .. 546 555 .. 546 556 .. 0.90 12 ! 12.0 0.5 6.9e-05 0.14 2 24 .. 573 595 .. 572 598 .. 0.89 13 ! 9.7 0.3 0.00036 0.73 2 12 .. 601 611 .. 600 611 .. 0.92 14 ! 7.4 1.0 0.0019 3.9 2 12 .. 629 639 .. 628 651 .. 0.86 15 ! 8.9 0.8 0.00065 1.3 2 26 .. 657 681 .. 656 682 .. 0.90 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.048 zf-C2H2_6 2 heCdeCsksFpS 13 + C+ C+k F+ T179989_1 265 YDCSDCGKAFSQ 276 67********85 PP == domain 2 score: -1.9 bits; conditional E-value: 1.6 zf-C2H2_6 2 heCdeCsksF 11 + C+ C F T179989_1 293 YGCSRCQTAF 302 88****7655 PP == domain 3 score: 6.6 bits; conditional E-value: 0.0033 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+ C+k F L++H ++H T179989_1 321 YECNKCGKAFTDKSCLNKHQRTH 343 9*********8766677776666 PP == domain 4 score: 1.6 bits; conditional E-value: 0.12 zf-C2H2_6 2 heCdeCsksFp 12 +eC++C k F+ T179989_1 349 FECHTCQKGFS 359 9*******996 PP == domain 5 score: 5.5 bits; conditional E-value: 0.0078 zf-C2H2_6 2 heCdeCsksFp 12 + C+ C ksF+ T179989_1 377 YGCSKCQKSFS 387 88********8 PP == domain 6 score: 10.7 bits; conditional E-value: 0.00018 zf-C2H2_6 2 heCdeCsksFp 12 + CdeC+k+Fp T179989_1 405 YGCDECGKTFP 415 88********8 PP == domain 7 score: 5.2 bits; conditional E-value: 0.0094 zf-C2H2_6 2 heCdeCsksF 11 h C+eC+k F T179989_1 433 HGCNECGKAF 442 89******99 PP == domain 8 score: 6.6 bits; conditional E-value: 0.0035 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksHrk 26 ++C+eC+k F+ L++H ++H++ T179989_1 461 YHCSECGKGFSVKSFLNTHWRTHMG 485 9*********977778888777775 PP == domain 9 score: 5.3 bits; conditional E-value: 0.0087 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkk 22 + C+eC+k F+ +L+ H + T179989_1 489 YGCNECGKMFSIKFSLILHQR 509 88******9985555555555 PP == domain 10 score: 9.3 bits; conditional E-value: 0.00048 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC++C k+F+ L+ H +sH T179989_1 517 YECSQCQKTFSQKSHLNIHQRSH 539 9*********9766677777766 PP == domain 11 score: 2.7 bits; conditional E-value: 0.056 zf-C2H2_6 3 eCdeCsksFp 12 eC eC+k F+ T179989_1 546 ECGECHKAFS 555 8********8 PP == domain 12 score: 12.0 bits; conditional E-value: 6.9e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC eC+k+F++ +L++H + H T179989_1 573 YECLECGKTFSRKFSLTTHQRIH 595 9************9999998766 PP == domain 13 score: 9.7 bits; conditional E-value: 0.00036 zf-C2H2_6 2 heCdeCsksFp 12 + C+eC+k+Fp T179989_1 601 YGCSECGKTFP 611 88********8 PP == domain 14 score: 7.4 bits; conditional E-value: 0.0019 zf-C2H2_6 2 heCdeCsksFp 12 heC+ C ksF T179989_1 629 HECSKCQKSFA 639 9*********5 PP == domain 15 score: 8.9 bits; conditional E-value: 0.00065 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksHrk 26 +eC+eC k+F + +L+ H k+H++ T179989_1 657 YECTECWKTFFRKFSLILHQKTHKG 681 9*********999999999999986 PP >> zinc_ribbon_15 zinc-ribbon family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.9 3.3 0.00013 0.27 25 75 .. 252 302 .. 232 307 .. 0.86 2 ? 3.9 8.7 0.04 82 30 78 .. 313 361 .. 302 366 .. 0.83 3 ! 9.6 1.8 0.00068 1.4 35 79 .. 374 418 .. 365 421 .. 0.85 4 ! 10.9 1.1 0.00026 0.53 23 74 .. 418 469 .. 412 475 .. 0.86 5 ! 12.5 1.2 8.3e-05 0.17 29 78 .. 480 529 .. 471 532 .. 0.86 6 ! 7.5 1.7 0.0031 6.3 31 79 .. 566 614 .. 546 616 .. 0.82 7 ! 5.9 1.6 0.0097 20 32 75 .. 623 666 .. 620 672 .. 0.83 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00013 zinc_ribbon_15 25 fipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkev 75 i+ +k++k+++ + cs+C++ ++++ +l k+ ++++ ++ + C++C+++ T179989_1 252 LIKHWKTQKREKQYDCSDCGKAFSQKLDLFKHQRTQRGEKPYGCSRCQTAF 302 6899*************************99999999999*******9875 PP == domain 2 score: 3.9 bits; conditional E-value: 0.04 zinc_ribbon_15 30 kwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 +++++++ + c+kC++ +++++ l+k+ ++++ ++ eC+ C+k +++ T179989_1 313 RTHTEEKPYECNKCGKAFTDKSCLNKHQRTHTGEKCFECHTCQKGFSDK 361 6667778889************9999999999999*******9987765 PP == domain 3 score: 9.6 bits; conditional E-value: 0.00068 zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkessekkeCknCgkeveeef 79 ++ + cskC++ ++++++l + +++++++ + C++Cgk+ +f T179989_1 374 EKPYGCSKCQKSFSNKSQLMIHQRAHTEEKPYGCDECGKTFPLKF 418 55678************9999999999999********9987766 PP == domain 4 score: 10.9 bits; conditional E-value: 0.00026 zinc_ribbon_15 23 lffipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgke 74 + i k+++ ++ c++C++ + +++el+++ ++++ ++ ++C++Cgk T179989_1 418 FNLILHQKIHTGEKSHGCNECGKAFIQRSELSRHQRTHTGEKPYHCSECGKG 469 5556667889999999*************9999999999999*******986 PP == domain 5 score: 12.5 bits; conditional E-value: 8.3e-05 zinc_ribbon_15 29 fkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++++ ++ + c++C+++++++ +l + ++++ ++ +eC++C+k+ +++ T179989_1 480 WRTHMGEKPYGCNECGKMFSIKFSLILHQRTHTGEKPYECSQCQKTFSQK 529 66677777889************9999999999999*********98876 PP == domain 6 score: 7.5 bits; conditional E-value: 0.0031 zinc_ribbon_15 31 wkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeveeef 79 +++ ++ + c +C+++++ + +l+++ + ++ ++++ C++Cgk+ +f T179989_1 566 IHSGEKPYECLECGKTFSRKFSLTTHQRIHTGEKSYGCSECGKTFPVKF 614 555566678999********9999999888999999*****99987666 PP == domain 7 score: 5.9 bits; conditional E-value: 0.0097 zinc_ribbon_15 32 kkkkpylacskCkslleaskelgkeiekkessekkeCknCgkev 75 ++ +++ cskC++ ++++++l + +++ ++ +eC +C k+ T179989_1 623 HTGEKLHECSKCQKSFAQKSHLIIHQRTHIGEKPYECTECWKTF 666 56678899***********99988888888889*******8876 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 1.4 0.00014 0.29 5 35 .. 264 301 .. 264 304 .. 0.89 2 ? 2.0 9.3 0.1 2.1e+02 6 34 .. 321 353 .. 320 356 .. 0.75 3 ? 2.9 5.6 0.056 1.1e+02 6 34 .. 349 384 .. 348 389 .. 0.85 4 ! 9.7 3.5 0.00042 0.85 6 34 .. 377 412 .. 374 415 .. 0.90 5 ! 12.9 0.9 3.9e-05 0.08 6 34 .. 405 440 .. 403 446 .. 0.90 6 ! 9.5 2.3 0.00045 0.92 6 34 .. 461 496 .. 460 501 .. 0.81 7 ! 7.1 4.2 0.0026 5.3 6 35 .. 489 525 .. 488 529 .. 0.84 8 ? 4.6 4.7 0.016 33 6 38 .. 517 556 .. 516 559 .. 0.76 9 ! 7.5 3.3 0.002 4 7 39 .. 546 585 .. 546 586 .. 0.87 10 ! 13.3 2.6 3e-05 0.061 6 34 .. 573 608 .. 572 614 .. 0.92 11 ? 3.1 2.7 0.049 99 7 33 .. 630 663 .. 628 670 .. 0.80 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00014 Zn-ribbon_8 5 eYrCeaCghefe......vlqsisdaplta.CPeCgse 35 +Y C +Cg+ f + q+ + +++ C +C+ + T179989_1 264 QYDCSDCGKAFSqkldlfKHQRTQRGEKPYgCSRCQTA 301 59***********99999999888999999*****865 PP == domain 2 score: 2.0 bits; conditional E-value: 0.1 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdapltaCPeCgs 34 Y+C++Cg+ f+ + q+ + + +C eC+ T179989_1 321 YECNKCGKAFTdksclnKHQRTHTGE--KCFECHT 353 9**********999888888777544..4666653 PP == domain 3 score: 2.9 bits; conditional E-value: 0.056 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 ++C+ C++ f q+ + +++ C +C++ T179989_1 349 FECHTCQKGFSdkskltFHQRTHTGEKPYgCSKCQK 384 89*********9999966666668899999****86 PP == domain 4 score: 9.7 bits; conditional E-value: 0.00042 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y C +C++ f + q+++ ++++ C eCg+ T179989_1 377 YGCSKCQKSFSnksqlmIHQRAHTEEKPYgCDECGK 412 89************9998999997788999****97 PP == domain 5 score: 12.9 bits; conditional E-value: 3.9e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y C++Cg++f q+i+ ++ + C eCg+ T179989_1 405 YGCDECGKTFPlkfnliLHQKIHTGEKSHgCNECGK 440 89**************99999999999999*****8 PP == domain 6 score: 9.5 bits; conditional E-value: 0.00045 Zn-ribbon_8 6 YrCeaCghefe.......vlqsisdaplta.CPeCgs 34 Y+C +Cg+ f ++++ + +++ C eCg+ T179989_1 461 YHCSECGKGFSvksflntHWRTHM-GEKPYgCNECGK 496 9**********9999988666444.447788****96 PP == domain 7 score: 7.1 bits; conditional E-value: 0.0026 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y C++Cg+ f q+ + +++ C +C+++ T179989_1 489 YGCNECGKMFSikfsliLHQRTHTGEKPYeCSQCQKT 525 88************9966666668889999****875 PP == domain 8 score: 4.6 bits; conditional E-value: 0.016 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta..CPeCgsevrr 38 Y+C +C+++f + q+++ +++ C eC+++ r T179989_1 517 YECSQCQKTFSqkshlnIHQRSH-TGEKP*eCGECHKAFSR 556 9**********999885555544.44666669999987665 PP == domain 9 score: 7.5 bits; conditional E-value: 0.002 Zn-ribbon_8 7 rCeaCghefe......vlqsisdaplta.CPeCgsevrrv 39 +C +C++ f + q+i+ +++ C eCg++ r T179989_1 546 ECGECHKAFSrksyllIHQRIHSGEKPYeCLECGKTFSRK 585 6999******9999999999998888888****9988875 PP == domain 10 score: 13.3 bits; conditional E-value: 3e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C +Cg++f q+i+ ++ C eCg+ T179989_1 573 YECLECGKTFSrkfsltTHQRIHTGEKSYgCSECGK 608 9***************99999999999999*****8 PP == domain 11 score: 3.1 bits; conditional E-value: 0.049 Zn-ribbon_8 7 rCeaCghefe......vlqsisdaplta.CPeCg 33 +C +C++ f + q+ + +++ C eC T179989_1 630 ECSKCQKSFAqkshliIHQRTHIGEKPYeCTECW 663 6999999999999997777777777788899995 PP >> C1_4 TFIIH C1-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.4 0.0047 9.6 19 45 .. 258 284 .. 244 289 .. 0.79 2 ? 3.6 3.7 0.037 74 2 48 .. 267 315 .. 266 317 .. 0.77 3 ? -2.4 7.9 2.7 5.6e+03 2 35 .. 295 330 .. 294 348 .. 0.72 4 ? 1.0 8.3 0.23 4.7e+02 1 36 [. 322 359 .. 322 374 .. 0.74 5 ? 11.4 4.4 0.00013 0.26 1 48 [. 350 399 .. 350 402 .. 0.88 6 ? 12.3 4.1 7e-05 0.14 2 50 .. 379 429 .. 377 437 .. 0.81 7 ? 5.2 1.1 0.012 24 2 37 .. 435 472 .. 434 484 .. 0.79 8 ? 5.4 1.1 0.0096 20 2 49 .. 463 512 .. 462 514 .. 0.72 9 ? 5.2 2.9 0.011 23 4 48 .. 493 539 .. 490 542 .. 0.67 10 ? 4.6 4.2 0.017 35 1 49 [. 518 568 .. 518 570 .. 0.83 11 ? 5.9 1.1 0.0069 14 1 36 [. 574 611 .. 574 616 .. 0.84 12 ? 7.0 2.5 0.0031 6.3 1 36 [. 630 667 .. 619 681 .. 0.77 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0047 C1_4 19 eeltssryrCekCkqdFCiDCDvfiHe 45 ++ + +y C C + F D+f H+ T179989_1 258 TQKREKQYDCSDCGKAFSQKLDLFKHQ 284 4466789*****************997 PP == domain 2 score: 3.6 bits; conditional E-value: 0.037 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 C C k+f + + k+++ + y C +C++ F + He H T179989_1 267 CSDCGKAFSQKLDLFKHQRtqRGEKPYGCSRCQTAFRWKSCLILHERTH 315 89999999998876554442267889**********8877777888777 PP == domain 3 score: -2.4 bits; conditional E-value: 2.7 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdF 35 C Cq++f +e+ + + y+C+kC + F T179989_1 295 CSRCQTAFRWKSCLILHERthTEEKPYECNKCGKAF 330 77888888765544333332277889******9998 PP == domain 4 score: 1.0 bits; conditional E-value: 0.23 C1_4 1 eCygCqkkfpklk..kkkkdeeltssryrCekCkqdFC 36 eC C k+f+ +k++ +++ + +++C++C++ F T179989_1 322 ECNKCGKAFTDKSclNKHQRTHTGEKCFECHTCQKGFS 359 59999999986651145555558899********9985 PP == domain 5 score: 11.4 bits; conditional E-value: 0.00013 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 eC +Cqk f k + +++ + + y C kC++ F + iH+ H T179989_1 350 ECHTCQKGFSDKSKLTFHQRthTGEKPYGCSKCQKSFSNKSQLMIHQRAH 399 6*********99999887774466789***********999999999888 PP == domain 6 score: 12.3 bits; conditional E-value: 7e-05 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLHnC 50 C Cqk+f + + +++ + + y C++C ++F + + H+++H+ T179989_1 379 CSKCQKSFSNKSQLMIHQRahTEEKPYGCDECGKTFPLKFNLILHQKIHTG 429 999*****999887766555577899***********************73 PP == domain 7 score: 5.2 bits; conditional E-value: 0.012 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdFCi 37 C C k+f++ + + +++ + + y+C +C + F + T179989_1 435 CNECGKAFIQRSELSRHQRthTGEKPYHCSECGKGFSV 472 89999999998876665554467889******999976 PP == domain 8 score: 5.4 bits; conditional E-value: 0.0096 C1_4 2 CygCqkkfpklk..kkkkdeeltssryrCekCkqdFCiDCDvfiHesLHn 49 C C k f +++ +++ + y C++C ++F i + H+ H+ T179989_1 463 CSECGKGFSVKSflNTHWRTHMGEKPYGCNECGKMFSIKFSLILHQRTHT 512 77777766544311333444577889************999999998885 PP == domain 9 score: 5.2 bits; conditional E-value: 0.011 C1_4 4 gCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 C k f + +++ + + y+C +C+++F + iH+ H T179989_1 493 ECGKMFSIKFSLILHQRthTGEKPYECSQCQKTFSQKSHLNIHQRSH 539 555555544443333222266788**********9999999998877 PP == domain 10 score: 4.6 bits; conditional E-value: 0.017 C1_4 1 eCygCqkkfpklkkkkkdeeltssry..rCekCkqdFCiDCDvfiHesLHn 49 eC Cqk+f + + + ++++ + +C++C++ F + iH+ +H+ T179989_1 518 ECSQCQKTFSQKSHLNIHQRSHTGEKp*ECGECHKAFSRKSYLLIHQRIHS 568 6999*****99888776666555555588*********9999999999996 PP == domain 11 score: 5.9 bits; conditional E-value: 0.0069 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFC 36 eC C k+f + + +++++ + + y C +C ++F T179989_1 574 ECLECGKTFSRKFSLTTHQRihTGEKSYGCSECGKTFP 611 699******999888777665577899******99995 PP == domain 12 score: 7.0 bits; conditional E-value: 0.0031 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFC 36 eC Cqk+f++ + +++ + + y+C +C ++F T179989_1 630 ECSKCQKSFAQKSHLIIHQRthIGEKPYECTECWKTFF 667 59999999999888766554347788999999998885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 695 (0.0426223); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 4291.24 // Query: T179989_2 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 4847.52 // Query: T179989_3 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 4592.39 // Query: T183048_1 [L=4927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.27s 00:00:01.54 Elapsed: 00:00:00.64 # Mc/sec: 22023.92 // Query: T183048_2 [L=4927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.30s 00:00:01.54 Elapsed: 00:00:00.65 # Mc/sec: 21685.09 // Query: T183048_3 [L=4927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.28s 00:00:01.61 Elapsed: 00:00:00.66 # Mc/sec: 21356.53 // Query: T291136_1 [L=4391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 18473.39 // Query: T291136_2 [L=4391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 19326.01 // Query: T291136_3 [L=4390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-45 155.2 2.5 2.4e-45 154.6 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0029 17.4 1.0 0.0029 17.4 1.0 2.0 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 154.6 2.5 3e-49 2.4e-45 1 222 [] 3810 4066 .. 3810 4066 .. 0.92 Alignments for each domain: == domain 1 score: 154.6 bits; conditional E-value: 3e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291136_3 3810 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 3907 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291136_3 3908 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 4005 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291136_3 4006 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 4066 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.33 2.7e+03 16 28 .. 178 190 .. 177 190 .. 0.92 2 ! 17.4 1.0 3.5e-07 0.0029 25 48 .. 2889 2912 .. 2886 2915 .. 0.90 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.33 HSBP1 16 dkFqtmsdqilsr 28 kFq+ s++il+r T291136_3 178 AKFQKTSHEILQR 190 59*********97 PP == domain 2 score: 17.4 bits; conditional E-value: 3.5e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291136_3 2889 LEKRLDKMLTRITSLEKNINDLMQ 2912 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.68 # Mc/sec: 18469.18 // Query: T125935_1 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 5600.44 // Query: T125935_2 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 5600.44 // Query: T125935_3 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5895.35 // Query: T260677_1 [L=1076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5400.44 // Query: T260677_2 [L=1076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 5307.33 // Query: T260677_3 [L=1075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 456 (0.0279652); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 5302.40 // Query: T133006_1 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 2177.41 // Query: T133006_2 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 2137.82 // Query: T133006_3 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2057.79 // Query: T215544_1 [L=2848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-07 28.7 0.9 1.6e-06 27.5 0.9 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.9 9.6e-11 1.6e-06 1 16 [. 2063 2078 .. 2063 2080 .. 0.95 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 9.6e-11 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+WM+LE+IILS+ T215544_1 2063 SFAGTWMKLETIILSK 2078 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 13141.36 // Query: T215544_2 [L=2848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 7.5 8.7 6.1 6.5 8.7 1.5 1 IncA IncA protein Domain annotation for each model (and alignments): >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 8.7 0.00037 6.1 95 177 .. 1130 1206 .. 1124 1257 .. 0.76 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00037 IncA 95 eeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrlq 177 ++ q+++++++l+++lk+le++++ ++ + s ++++ +++ ++ke++ ++l++++++++ + e+ +r+ l+rl T215544_2 1130 HKRKQERTKINTLTSQLKELEKQEQTNS--KASRKQEITKIRAELKEIETQ-KTLQKINESRSGFFEKINKTDRS---LARLT 1206 78999***********************..999999999999999988766.44443444444433333333333...33333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1062 (0.0651294); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.64 # Mc/sec: 12730.69 // Query: T215544_3 [L=2848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-117 391.6 11.5 4.8e-117 390.8 11.5 1.4 1 Transposase_22 L1 transposable element 3.7e-42 144.2 1.2 6.5e-42 143.4 1.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.00042 20.4 0.1 0.0019 18.3 0.0 2.0 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 390.8 11.5 8.9e-121 4.8e-117 138 368 .] 568 800 .. 518 800 .. 0.92 Alignments for each domain: == domain 1 score: 390.8 bits; conditional E-value: 8.9e-121 ..XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 138 daslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 +s++s+ d++e+rvs ++d+i+ei+ e k+rekr+k++eqslq+iqd+vkrPnl liG++es+ e+++klen+l++ii+enfPnl++++n++iq T215544_3 568 CTSFNSQFDQVEQRVSVIDDQINEIKGEEKFREKRVKRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLQDIIQENFPNLARQVNIQIQ 662 46999****************************************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGe 327 ei+rtP+r++ +ra+srhii+r+tkv++k+k+l+ +rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Ge T215544_3 663 EIQRTPQRYSLRRAASRHIIIRFTKVEMKEKMLRPAREKGRVTHKGKPIRLTGDLSAETLQARREWGPIFNILKEKNFQPRITYPAKLSFISEGE 757 *********************************************************************************************** PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f dk++lrd+++trP+l++llke ++er+++yq+l++++ T215544_3 758 IKSFTDKQMLRDFVTTRPTLQELLKEalNMERNNQYQPLQNHA 800 *****************************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.4 1.2 1.2e-45 6.5e-42 5 209 .. 1352 1576 .. 1348 1603 .. 0.91 Alignments for each domain: == domain 1 score: 143.4 bits; conditional E-value: 1.2e-45 T.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 5 gpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 + +++Rpisl++vd+k++nk++a++++++++kl+ ++ + f pg + + ++ + ++++++ + k+++++++ +kaF++++ + ++l +++++ T215544_3 1352 T-ENFRPISLMNVDVKIINKILANQIQQHIKKLILHDKVSFIPGMQGWFNIcksiNIIHHINRTNDKNHVIISIGAEKAFNKIQQCFMPKTLSKLGID 1448 3.79**************************************************99999999999999****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHH CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqellea 186 +++i++++ ++++++ ++g++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ T215544_3 1449 GAYLKIIRAIFDKPTANIILSGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiq*gkEEVKLSLFADDMMVYLENpIVSAQNLLKL 1546 ***********************99*********************************99***************************6677******* PP HHHHHHHTT--BEGGG-EEE.......... CS RVT_1 187 veewlkesglkinpeKtklvlf.......s 209 ++++ k sg+kin +K++++l+ + T215544_3 1547 ISNFSKVSGYKINVQKSQAFLYtnkqtnrE 1576 ********************9855554440 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.45 2.5e+03 12 51 .. 604 658 .. 570 780 .. 0.62 2 ! 18.3 0.0 3.5e-07 0.0019 6 87 .. 840 985 .. 835 1074 .. 0.80 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.45 HHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...............E CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x RF Exo_endo_phos 12 aeksrrsaaladllkaydadvlglqEvdddelsrlplla...............d 51 ++++++ ++++d +k+ + ++g+ E d++++++l+ + + T215544_3 604 KRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLqdiiqenfpnlarqvN 658 3444455555555555566788877777666666655555444444444444441 PP == domain 2 score: 18.3 bits; conditional E-value: 3.5e-07 STCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........EEEEEEESSSTTSSEEEEEECSEEEEE............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF Exo_endo_phos 6 ngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...........dadaskfgtgkgqggvavlsrfpltsl............. 77 ng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + +k++ gv++l++ + + + T215544_3 840 NG----LNARIKRHRLANWIKSQDPLVCCIQETHLMCRDTHRLKIkgwreiyqan*K--------QKKKAGVVILVSDETDFKptkdqkrqgrplr 923 45....555677899*****************9999887777777877777777773........5667888888888886666778888888888 PP .........................................EEEEEE-SS...........- CS .........................................xxxxxxxxx...........x RF Exo_endo_phos 78 .........................................vivlGDfNa...........r 87 i++GDfN+ r T215544_3 924 ngkeinatrranypkyicnntgaprfiqqvlrdlqrdldshTIIMGDFNThcqy*td*qdrR 985 88888888888999999999999999999999999999999********9555555555552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.81 # Mc/sec: 10058.82 // Query: T231580_1 [L=3076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 720 (0.0441555); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.39s 00:00:02.02 Elapsed: 00:00:00.68 # Mc/sec: 12941.05 // Query: T231580_2 [L=3076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 564 (0.0345885); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.37s 00:00:01.86 Elapsed: 00:00:00.74 # Mc/sec: 11891.77 // Query: T231580_3 [L=3075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.43s 00:00:02.02 Elapsed: 00:00:00.75 # Mc/sec: 11729.40 // Query: T147996_1 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 3735.91 // Query: T147996_2 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 3118.77 // Query: T147996_3 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 3459.00 // Query: T269168_1 [L=2720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-23 81.4 0.0 7.2e-23 80.9 0.0 1.2 1 AIG1 AIG1 family 0.0071 16.3 0.0 0.012 15.5 0.0 1.3 1 MMR_HSR1 50S ribosome-binding GTPase Domain annotation for each model (and alignments): >> AIG1 AIG1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.9 0.0 8.9e-27 7.2e-23 2 189 .. 2095 2295 .. 2094 2302 .. 0.83 Alignments for each domain: == domain 1 score: 80.9 bits; conditional E-value: 8.9e-27 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-E......EEEEEETT.....EEEEEEE--SCCCTTCCHHCHHHHHHHHHH..HCTT-ESE CS AIG1 2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcq......kksrtwdg.....kkinViDTPglfdlsvsadkiskeivrcll..lseegiha 86 ++ l G t +GkS++gN +lg++ F+s+++ svt+ c+ +s +++g +++V DTPg + s++++++e+++ l + + g+h T269168_1 2095 NLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSlgrschLHSFMRRGglevaLQVQVLDTPGYPHSRLSKKYVKQEVKEALAhhFGQGGLHL 2192 6889******************************976651111104555445467777899***********************9885226799**** PP EEEEEETT..B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTCC..HHHHHHHHH-HHHHHHHHHTTTSEEEEETTHHHHHHHHHHHHHHHHH CS AIG1 87 lllvlslg..rfteedekalktlkelFGekilkylivvftrkddledds..ledylsksspeaLkevlkecgnRvvlfnnktaskeekeeQvkellel 180 llv +++ +e + +++++el G+ ++y+ ++ft+++++e+ + ++yl++ s ++Lk++l+ +++++v f++k +++ +eQ+ ++le T269168_1 2193 ALLVQRADvpFCGQEVTDPVQMIQELLGHAWMNYTAILFTHAEKIEEAGltEDKYLHEAS-DTLKTLLNSIQHKYV-FQYK--KGKSLNEQRMKILER 2286 ****777763667777889******************************54467***777.66******9988876.8888..7899999*******9 PP HHHHHHHTT CS AIG1 181 veaivkeng 189 + + ken T269168_1 2287 IMEFIKENC 2295 999988886 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 0.0 1.5e-06 0.012 2 74 .. 2096 2176 .. 2095 2231 .. 0.60 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 1.5e-06 EEEEESTTSSHHHHHHHHHTS...TEEECSSTTSSSSCEEEEEE.........ET.TEEEEEEECGGTSSHHHHHHHHHHHHHHHH CS MMR_HSR1 2 vaivGrpNvGKStLinaltge...raivsdkpgtTrdinegrvk.........lk.gkeielvDtpGliegaseekglgkaflale 74 a++G++ +GKS+ n l+g+ ++ + tT + + l+ +++++DtpG + + +l+k++ + e T269168_1 2096 LALFGMTQSGKSSAGNILLGStdfHSSFAPCSVTTCCSLGRSCHlhsfmrrggLEvALQVQVLDTPG-YP----HSRLSKKYVKQE 2176 699*****************963334444444555555555444444444444212367********.64....122222222211 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.68 # Mc/sec: 11443.32 // Query: T269168_2 [L=2719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 10371.46 // Query: T269168_3 [L=2719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.67 # Mc/sec: 11609.85 // Query: T068206_1 [L=1852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.77 # Mc/sec: 6880.85 // Query: T068206_2 [L=1852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 7907.85 // Query: T068206_3 [L=1851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.43s 00:00:01.42 Elapsed: 00:00:00.75 # Mc/sec: 7060.53 // Query: T063051_1 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.65 # Mc/sec: 9159.06 // Query: T063051_2 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 8754.98 // Query: T063051_3 [L=2080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 8750.77 // Query: T303077_1 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.75 # Mc/sec: 7586.92 // Query: T303077_2 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 8010.32 // Query: T303077_3 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.42s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 8242.51 // Query: T097221_1 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1647 (0.101006); expected 326.1 (0.02) Passed bias filter: 447 (0.0274132); expected 326.1 (0.02) Passed Vit filter: 220 (0.013492); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.42s 00:00:02.40 Elapsed: 00:00:00.79 # Mc/sec: 6054.82 // Query: T097221_2 [L=1671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 17.6 15.6 0.002 16.8 15.6 1.3 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 15.6 1.3e-07 0.002 215 316 .. 1035 1141 .. 1031 1198 .. 0.42 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 1.3e-07 Presenilin 215 iYsaevvvlaaeeeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse...........seeeeeeesaeaeseaeesseekeeees 300 i++++ ++e+++e+++++k++e+++ +k+ ++++e+++e+++++e +++++s+++ + e++++++++e+++++e+k+ee++ T097221_2 1035 IFDSTFLERKKERKKEREKERKKKERKKGRKEGKKEKEKERERKKRKERKRRKESKRKreegkgregrkR----ERKKEKEKKEKKKKKETKKEERK 1127 5666666665555443333222222222222222222222222222222222222222344544432211....11111111111111111111111 PP Presenilin 301 sesseeeeeeeeeeee 316 +++++ e++e+e++e T097221_2 1128 RKKEK--EKKERERKE 1141 11111..111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2153 (0.132037); expected 326.1 (0.02) Passed bias filter: 722 (0.0442782); expected 326.1 (0.02) Passed Vit filter: 437 (0.0268); expected 16.3 (0.001) Passed Fwd filter: 102 (0.00625537); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.91u 0.55s 00:00:03.46 Elapsed: 00:00:00.90 # Mc/sec: 5311.61 // Query: T097221_3 [L=1671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.1 56.5 2.2 7.5 56.5 1.1 1 Nop53 Nop53 (60S ribosomal biogenesis) 8.3 4.9 25.1 13 4.3 25.1 1.2 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Nop53 Nop53 (60S ribosomal biogenesis) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 56.5 0.00026 2.2 200 302 .. 1042 1149 .. 1036 1179 .. 0.63 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00026 Nop53 200 kaveaEkkrekeeeklerqlekiaekaataeareeelseeddeeeeeeeeeeeeeeeeeee.......knvkkkpkrKTkaqRnkekrrkeeekeeke 290 k+ ++E+k+e+++e+ +r++++ +++++ ++++e+e e+++ +ee + +e+e++e+e++ k++++k+krK k+qR+k++r+++++k++ke T097221_3 1042 KERKKERKKERKRERRKRERKEGRKERKRKKKKEKERKERKE--KEERKVKEKERKEREGKggrergrKRKRRKKKRKRKKQRKKRERERKRKKKKKE 1137 555666666666666666666665555555555554444444..333334444444444446688888777888899999999999888888777777 PP Nop53 291 ekkekkkekqle 302 ++k+kk+ek+ e T097221_3 1138 KEKKKKREKERE 1149 777776666533 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 25.1 0.0016 13 229 315 .. 1048 1145 .. 1034 1172 .. 0.31 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.0016 Presenilin 229 aekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse................seeeeeeesaeaeseaeesseekeeeessesseeeee 309 ++k+++++++++e++e ++e++++++ke+e++e++++++++ +e + +++++++++ +++++++e+e++++++++e+e T097221_3 1048 RKKERKRERRKRERKEGRKERKRKKKKEKERKERKEKEERKVKEkerkeregkggrergrK-----RKRRKKKRKRKKQRKKRERERKRKKKKKEKE 1139 2222222222222222222222222222222222222222222222233445554333221.....1111111111111111111111111111111 PP Presenilin 310 eeeeee 315 +++++e T097221_3 1140 KKKKRE 1145 111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2123 (0.130197); expected 326.1 (0.02) Passed bias filter: 635 (0.0389427); expected 326.1 (0.02) Passed Vit filter: 388 (0.0237949); expected 16.3 (0.001) Passed Fwd filter: 85 (0.00521281); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.75u 0.52s 00:00:03.27 Elapsed: 00:00:00.90 # Mc/sec: 5311.61 // Query: T124045_1 [L=1058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 4323.94 // Query: T124045_2 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 4319.85 // Query: T124045_3 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5399.82 // Query: T380974_1 [L=226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 1114.74 // Query: T380974_2 [L=226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 35 (0.00214645); expected 326.1 (0.02) Passed bias filter: 22 (0.0013492); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.65 # Mc/sec: 994.69 // Query: T380974_3 [L=226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00021 21.5 6.6 0.00062 20.0 6.1 2.0 2 SPAN-X Sperm protein associated with nucleus, mapped to X Domain annotation for each model (and alignments): >> SPAN-X Sperm protein associated with nucleus, mapped to X chromosome # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.3 0.023 3.8e+02 23 46 .. 91 114 .. 85 116 .. 0.83 2 ! 20.0 6.1 3.8e-08 0.00062 12 72 .. 112 173 .. 95 177 .. 0.81 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.023 SPAN-X 23 kndemqetpkrdsapeqslkktkt 46 ++ m+e ++ s+ ++s+k k+ T380974_3 91 ASSDMPEPSTSTSQENPSMKWRKK 114 567899999*********998887 PP == domain 2 score: 20.0 bits; conditional E-value: 3.8e-08 SPAN-X 12 krkspceSnekkndemqetpkr.dsapeqslkktktseystvlvlsyrkekkinsnqLendq 72 ++k+ ce e + de ++ k+ s +q + k+ + stvl+++y+ +kk+ nq ++d+ T380974_3 112 RKKTTCEAKEGETDELLKAAKKiRSFVQQNSERRKAGKKSTVLIFYYHSNKKRDENQPNEDE 173 578**********9987776652678889999*********************999976664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 904 (0.0554397); expected 326.1 (0.02) Passed bias filter: 334 (0.0204833); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 1114.74 // Query: T226522_1 [L=2570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:00.76 # Mc/sec: 9674.12 // Query: T226522_2 [L=2569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.43s 00:00:01.67 Elapsed: 00:00:00.81 # Mc/sec: 9073.42 // Query: T226522_3 [L=2569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.81 # Mc/sec: 9073.42 // Query: T106773_1 [L=1522] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1522 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 6698.74 // Query: T106773_2 [L=1521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.71 # Mc/sec: 6128.62 // Query: T106773_3 [L=1521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 6906.86 // Query: T194250_1 [L=4305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.09 12.8 19.6 41 4.3 0.1 7.6 8 RS4NT RS4NT (NUC023) domain Domain annotation for each model (and alignments): >> RS4NT RS4NT (NUC023) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.1 0.027 4.5e+02 8 16 .. 1898 1906 .. 1896 1907 .. 0.91 2 ? 4.3 0.1 0.0025 41 7 16 .. 1965 1974 .. 1964 1975 .. 0.93 3 ? 4.3 0.1 0.0025 41 8 17 .. 2141 2150 .. 2139 2150 .. 0.91 4 ? 4.3 0.1 0.0025 41 7 16 .. 2206 2215 .. 2205 2216 .. 0.93 5 ? -2.0 0.1 0.23 3.8e+03 10 16 .. 2242 2248 .. 2241 2249 .. 0.85 6 ? 2.3 0.0 0.011 1.7e+02 8 17 .. 2448 2457 .. 2446 2457 .. 0.91 7 ? 2.0 0.0 0.013 2.1e+02 8 16 .. 2520 2528 .. 2518 2529 .. 0.91 8 ? 1.8 0.0 0.015 2.5e+02 8 17 .. 2659 2668 .. 2657 2668 .. 0.90 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.027 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194250_1 1898 KSLKAPGHW 1906 9******** PP == domain 2 score: 4.3 bits; conditional E-value: 0.0025 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194250_1 1965 LKSLSAPEHW 1974 9********* PP == domain 3 score: 4.3 bits; conditional E-value: 0.0025 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+APkhW+ T194250_1 2141 KSLSAPKHWQ 2150 9********5 PP == domain 4 score: 4.3 bits; conditional E-value: 0.0025 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194250_1 2206 LKSLSAPEHW 2215 9********* PP == domain 5 score: -2.0 bits; conditional E-value: 0.23 TTS-GGG CS RS4NT 10 laAPkhW 16 ++AP hW T194250_1 2242 ISAPEHW 2248 79***** PP == domain 6 score: 2.3 bits; conditional E-value: 0.011 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+AP hW+ T194250_1 2448 KSLSAPEHWQ 2457 9********5 PP == domain 7 score: 2.0 bits; conditional E-value: 0.013 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194250_1 2520 KSLSAPEHW 2528 9******** PP == domain 8 score: 1.8 bits; conditional E-value: 0.015 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K l+AP hW+ T194250_1 2659 KTLSAPEHWQ 2668 99*******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.71 # Mc/sec: 17346.30 // Query: T194250_2 [L=4304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.81 # Mc/sec: 15201.25 // Query: T194250_3 [L=4304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.38s 00:00:01.89 Elapsed: 00:00:00.76 # Mc/sec: 16201.33 // Query: T020150_1 [L=2541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 12115.62 // Query: T020150_2 [L=2541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 263 (0.016129); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.74 # Mc/sec: 9823.47 // Query: T020150_3 [L=2540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.2 4.4 1.1 9.1 0.1 2.8 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 1.0 0.0055 89 10 21 .. 1564 1575 .. 1562 1577 .. 0.92 2 ? 9.1 0.1 7e-05 1.1 17 29 .. 2399 2411 .. 2397 2412 .. 0.96 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.0055 Toxin_18 10 CkysdecCSGAc 21 C y + cCS Ac T020150_3 1564 CPYTAWCCSWAC 1575 99*********9 PP == domain 2 score: 9.1 bits; conditional E-value: 7e-05 Toxin_18 17 CSGAcSaaFgyCL 29 CSG Sa F++CL T020150_3 2399 CSGMISAHFNLCL 2411 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 10845.53 // Query: T353448_1 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1486 (0.0911321); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 146 (0.00895376); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.44s 00:00:02.20 Elapsed: 00:00:00.89 # Mc/sec: 6187.75 // Query: T353448_2 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1246 (0.0764136); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.78 # Mc/sec: 7056.71 // Query: T353448_3 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1266 (0.0776401); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:00.69 # Mc/sec: 7977.15 // Query: T090239_1 [L=3351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.40s 00:00:01.71 Elapsed: 00:00:00.69 # Mc/sec: 13893.68 // Query: T090239_2 [L=3350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.78 # Mc/sec: 12286.90 // Query: T090239_3 [L=3350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.42s 00:00:01.64 Elapsed: 00:00:00.75 # Mc/sec: 12778.37 // Query: T381557_1 [L=4353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.34s 00:00:01.81 Elapsed: 00:00:00.85 # Mc/sec: 14650.82 // Query: T381557_2 [L=4352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:01.03 # Mc/sec: 12087.70 // Query: T381557_3 [L=4352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:00.70 # Mc/sec: 17786.19 // Query: T370120_1 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2654.85 // Query: T370120_2 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45 # Mc/sec: 2949.83 // Query: T370120_3 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.46 # Mc/sec: 2885.71 // Query: T362373_1 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 6877.67 // Query: T362373_2 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 6877.67 // Query: T362373_3 [L=1177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 6734.39 // Query: T035722_1 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.3 3.2 1.7 8.6 0.1 3.4 3 YjbT Uncharacterised protein family Domain annotation for each model (and alignments): >> YjbT Uncharacterised protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 0.1 0.0001 1.7 32 90 .. 100 157 .. 86 159 .. 0.84 2 ? 2.0 0.1 0.011 1.8e+02 33 90 .. 189 245 .. 179 247 .. 0.83 3 ? 3.4 0.0 0.0042 68 33 67 .. 262 294 .. 255 313 .. 0.78 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0001 YjbT 32 lgtadkadlpqsnvsspmmaqslrqpdlqpistdrktecfrlytpdrkpgvncvpdgst 90 ta +a++p s v p+ q r p lq + rk+ +y g +p ++ T035722_1 100 APTAGRAQIPTSTVQHPLQEQ-RRFPHLQLSTHCRKSADSHIYRTAHTAGTVQIPTSTA 157 45999************9877.599****99999**99999999999999888887665 PP == domain 2 score: 2.0 bits; conditional E-value: 0.011 YjbT 33 gtadkadlpqsnvsspmmaqslrqpdlqpistdrktecfrlytpdrkpgvncvpdgst 90 ta a++p s p+ q r p lq + r++ +y+ g +p ++ T035722_1 189 PTAGTAQIPTSTAQHPLQEQ-HRFPHLQYGTHCRNSADSHIYSTAPTAGTAQIPSSTA 245 588999**********9877.599****999999999899998888888888887655 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0042 YjbT 33 gtadkadlpqsnvsspmmaqslrqpdlqpistdrk 67 ta a++p s v p+ q r p lq t + T035722_1 262 PTAGTAQIPTSTVQHPLQEQ-CRFPHLQHS-THCR 294 58999***********9887.599999974.4443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.46 # Mc/sec: 3352.15 // Query: T035722_2 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.55 # Mc/sec: 2803.61 // Query: T035722_3 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00035 20.4 3.9 16 5.5 0.1 4.8 5 Ada_Zn_binding Metal binding domain of Ada Domain annotation for each model (and alignments): >> Ada_Zn_binding Metal binding domain of Ada # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.26 4.3e+03 24 44 .. 73 93 .. 71 95 .. 0.82 2 ! 4.5 0.0 0.002 33 7 44 .. 100 137 .. 94 145 .. 0.89 3 ! 4.8 0.0 0.0016 25 8 44 .. 145 181 .. 138 185 .. 0.88 4 ! 5.5 0.1 0.00098 16 9 44 .. 190 225 .. 182 229 .. 0.88 5 ! 3.2 0.1 0.0051 84 8 44 .. 262 298 .. 256 306 .. 0.87 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.26 TTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 24 tgiyCrpsCparlPkrenveF 44 g++ p++ a++P +e+ +F T035722_3 73 AGTVQIPTSTAQHPLQEQHSF 93 6777789*******9998777 PP == domain 2 score: 4.5 bits; conditional E-value: 0.002 HHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 7 lardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 +++ ++ad++ + a t g+ p++ a++P +e+ +F T035722_3 100 THCRKSADSHIYSAAPTAGTAQIPTSTAQHPLQEERRF 137 567899***************************99888 PP == domain 3 score: 4.8 bits; conditional E-value: 0.0016 HTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 8 ardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 ++ ++ad++ + + t g+ ps+ ar+P +e+ +F T035722_3 145 HCRNSADSHIYSSAPTAGTAQIPSSTARHPLQEQHRF 181 56788999999999******************99888 PP == domain 4 score: 5.5 bits; conditional E-value: 0.00098 TSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 9 rdaradgsFvyavkttgiyCrpsCparlPkrenveF 44 + ++ad++ + t g+ p++ +r+P +e+++F T035722_3 190 CRNSADSHIYSTAPTAGTAQIPTSTVRHPLQEQCRF 225 5678899999999999999****************9 PP == domain 5 score: 3.2 bits; conditional E-value: 0.0051 HTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 8 ardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 ++ ++ d++ + a t g++ p++ a++ +e+++F T035722_3 262 HCRNSTDSHIYSAAPTAGTVQIPTSTAQHTLQEQCSF 298 55678899999************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 2705.24 // Query: T171224_1 [L=2878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.63 # Mc/sec: 13069.00 // Query: T171224_2 [L=2878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.61 # Mc/sec: 13497.49 // Query: T171224_3 [L=2877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-116 389.4 16.5 1.8e-116 388.9 16.5 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.74 9.8 5.1 1.3 9.0 5.1 1.3 1 ATG16 Autophagy protein 16 (ATG16) 3 8.3 4.7 7.7 7.0 4.7 1.7 1 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 388.9 16.5 3.3e-120 1.8e-116 58 368 .] 102 384 .. 88 384 .. 0.89 Alignments for each domain: == domain 1 score: 388.9 bits; conditional E-value: 3.3e-120 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHH CS Transposase_22 58 kelkelieskakelealkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleerv 152 ++lke k+ +++k l e t +d + k+ + +e++t++++ sls ++d+ ee+v T171224_3 102 SKLKE----------------------------DVRIHHKEAGNLEKRLDEWLTIIDSVEKTLN-DLIELKTMAQKLRDECRSLSIQCDQQEEKV 167 44444............................4444445555555666666666666666655.45566666666665566************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS CS Transposase_22 153 saaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskras 247 s + +++e+++e k+r+k +k++eqslq+i+d+vkrPnlrliGv+es+ e+ +klen+l++ii+enfPnl+++a+++iqei+rtP+r++s+ra+ T171224_3 168 SVIV-KMNEMKQEEKFRDKIIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENRTKLENTLQDIIQENFPNLARQADIQIQEIQRTPQRYSSRRAT 261 *885.8***************************************************************************************** PP --EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHT CS Transposase_22 248 srhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdyls 342 +rhiivr+tkv++k+k+l+a+rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPa ls+i++Geik f dk+ lrd+++ T171224_3 262 PRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPANLSFISEGEIKSFTDKQILRDFVT 356 *********************************************************************************************** PP T-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 343 trPalkrllke..knerkdryqaleqar 368 trPal++llke ++er++ yq+l++++ T171224_3 357 TRPALQELLKEalNMERNNWYQSLQKHA 384 *************************996 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 5.1 0.00024 1.3 113 178 .. 103 168 .. 93 181 .. 0.64 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00024 ATG16 113 elqkleeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +l+++ + +++ +l++ +e + + +++ + l e++++ q l+DE +L +q+ q+Eek T171224_3 103 KLKEDVRIHHKEAGNLEKRLDEWLTIIDSVEKTLNDLIELKTMAQKLRDECRSLSIQCDQQEEKVS 168 33444444444444444444444444455555556689999**********************987 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 4.7 0.0014 7.7 12 95 .. 113 201 .. 100 203 .. 0.75 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0014 Syntaxin-6_N 12 kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriv.eknp..skfkidekelsrrrafveevreev 95 k++ +le+ +++w + + +++++ + el+ ++Lr ++rs++ + ++ ee v+++ + n+ ++ k ++k ++r ++ ++e+ + v T171224_3 113 KEAGNLEKRLDEWlTIIDSVEKTlNDLIELKTMAQKLRDECRSLSIQCDQQEEKVSVIvKMNEmkQEEKFRDKIIKRNEQSLQEIWDYV 201 6777889999999446666666687899***************************9773333322457888888888888888876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 612 (0.0375322); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.63 # Mc/sec: 13064.46 // Query: T050212_1 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 11512.37 // Query: T050212_2 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.60 # Mc/sec: 11128.63 // Query: T050212_3 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 11317.25 // Query: T090332_1 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-46 155.8 26.0 4.2e-38 129.2 13.7 2.6 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.5 4.3 3e-15 4.8e-11 12 56 .. 203 247 .. 195 247 .. 0.90 2 ! 129.2 13.7 2.6e-42 4.2e-38 1 89 [] 234 321 .. 234 321 .. 0.98 Alignments for each domain: == domain 1 score: 42.5 bits; conditional E-value: 3e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090332_1 203 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 247 566889*************************************97 PP == domain 2 score: 129.2 bits; conditional E-value: 2.6e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090332_1 234 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 321 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 9490.93 // Query: T090332_2 [L=1890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 9485.91 // Query: T090332_3 [L=1890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.59 # Mc/sec: 9164.35 // Query: T135770_1 [L=427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2181.38 // Query: T135770_2 [L=426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 2299.46 // Query: T135770_3 [L=426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 1904.24 // Query: T281175_1 [L=3636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.42s 00:00:01.86 Elapsed: 00:00:00.75 # Mc/sec: 13869.30 // Query: T281175_2 [L=3636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 933 (0.0572182); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.44s 00:00:02.43 Elapsed: 00:00:00.85 # Mc/sec: 12237.62 // Query: T281175_3 [L=3636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.63 # Mc/sec: 16511.08 // Query: T062565_1 [L=582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2973.22 // Query: T062565_2 [L=582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5 7.3 14.6 4 7.6 0.8 3.9 4 Ribosomal_L31 Ribosomal protein L31 Domain annotation for each model (and alignments): >> Ribosomal_L31 Ribosomal protein L31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.2 0.0012 20 34 50 .. 159 175 .. 158 178 .. 0.89 2 ? 7.6 0.8 0.00025 4 15 50 .. 198 237 .. 191 241 .. 0.75 3 ? 2.0 0.4 0.013 2.2e+02 14 50 .. 258 299 .. 252 303 .. 0.71 4 ? -1.8 0.1 0.21 3.4e+03 27 42 .. 316 328 .. 305 332 .. 0.78 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0012 Ribosomal_L31 34 ikvdvcsksHPfYtGkq 50 ++vdvc + H YtG++ T062565_2 159 LTVDVCTHDHASYTGTS 175 589************86 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00025 Ribosomal_L31 15 kcacgeefltrStl...kekpeik.vdvcsksHPfYtGkq 50 k+ c + trS++ +e i+ +dvc + H YtG++ T062565_2 198 KDICMRCVHTRSCVlhgHEFTRISaCDVCTHDHASYTGTS 237 34488889999999877444444349************76 PP == domain 3 score: 2.0 bits; conditional E-value: 0.013 Ribosomal_L31 14 vkca.cgeefltrStl...kekpeik.vdvcsksHPfYtGkq 50 v++ c + trS++ +e i+ dvc + H Y G++ T062565_2 258 VHMDiCTRCVHTRSCVlhgHEFTWISaRDVCTHDHASYPGTS 299 556668888899999955533333334899999999999875 PP == domain 4 score: -1.8 bits; conditional E-value: 0.21 Ribosomal_L31 27 tlkekpeikvdvcsks 42 t +++d+c ++ T062565_2 316 T---RARVHMDICMRC 328 4...78899****998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 2729.51 // Query: T062565_3 [L=582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.1 8.5 16.6 2.8 8.1 1.5 3.6 3 Ribosomal_L31 Ribosomal protein L31 Domain annotation for each model (and alignments): >> Ribosomal_L31 Ribosomal protein L31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 1.5 0.00017 2.8 12 50 .. 173 216 .. 165 221 .. 0.79 2 ? 5.0 1.6 0.0016 26 14 50 .. 237 278 .. 227 281 .. 0.72 3 ? 3.9 0.5 0.0035 56 13 48 .. 298 338 .. 290 343 .. 0.73 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00017 Ribosomal_L31 12 vvvkca.cgeefltrStl...kekpeik.vdvcsksHPfYtGkq 50 ++v++ c + trS++ +e i+ +dvc + H YtG++ T062565_3 173 AQVHMDiCMRCVHTRSCVlhgHEFTRISaCDVCTHDHASYTGTS 216 5677777999999****9877444444449************76 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0016 Ribosomal_L31 14 vkca.cgeefltrStl...kekpeik.vdvcsksHPfYtGkq 50 v+ c + trS++ +e i+ dvc + H YtG++ T062565_3 237 VHVDiCTRCVHTRSCVlsgHEFTWISaRDVCTHDHASYTGTS 278 4555588889999999655333333348************86 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0035 Ribosomal_L31 13 vvkca.cgeefltrStl...kekpeik.vdvcsksHPfYtG 48 v++ c + trS++ +e i+ +dvc + H Yt+ T062565_3 298 RVHMDiCMRCVHTRSCVlpgHEFTWISaCDVCTHDHASYTD 338 56666688889999999665333333349**********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 2973.22 // Query: T062242_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 4812.65 // Query: T062242_2 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00063 18.4 1.9 0.00063 18.4 1.9 2.0 2 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 0.14 12.2 0.0 0.23 11.5 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.2 0.015 1.2e+02 237 294 .. 206 260 .. 176 285 .. 0.73 2 ! 18.4 1.9 7.7e-08 0.00063 455 561 .] 735 841 .. 720 841 .. 0.80 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.015 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 237 drlldllqgayltLnatnpsltedCwlClesgppyyeaiavngsvsnktsapacslsp 294 r + l ++y + +t+ ++t dC C+++ + + i + + +++ + c+ + T062242_2 206 MRFIFLKFWTYTVRASTDLTQTGDCSQCIHQVTEAGQQIKTIFLFYSYYE---CMETI 260 56666777999999999999********9999988888887777766655...44444 PP == domain 2 score: 18.4 bits; conditional E-value: 7.7e-08 HHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HH.....HHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXX CS TLV_coat 455 aevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksg.....ivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLll 548 + + QNR LD L + eGG+C + +CC ++ g ivrd + k + q +++ + l fe ++ + tl+ +g+Ll++ Lll T062242_2 735 RNAIYQNRLALDYLLVAEGGVCRKFNlTNCCLQINDQGqvvknIVRD-MTKVAHVPVQVWHEFNPESL-FEKWFPAIRGFKTLI---VGVLLVIGTCLLL 829 56688******************998568****99865322226666.77888888888888988888.799999999999999...7777776665555 PP XXXXXXXXXXXXX CS TLV_coat 549 GPcilnrLvqlik 561 Pc+l L q+ik T062242_2 830 -PCVLPLLFQMIK 841 .****99999996 PP >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 2.9e-05 0.23 26 105 .. 720 794 .. 703 802 .. 0.84 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 2.9e-05 EEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEE CS Methyltransf_6 26 vGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfa 105 G+a+Tv + + ++++ +++ ++ + d l+v gg ++ + +l++ + + + +G vv+ vRD+++++ ++++v+ T062242_2 720 TGRALTVLAWQ-ETQMRNAIYQNRLALDYLLVAEGGV-CRKF---NLTNCCLQINDQGQVVKNIVRDMTKVAHVPVQVWH 794 6********88.6666666667777889999988885.5555...69******************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4662.26 // Query: T062242_3 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-06 27.1 0.2 6.3e-06 26.2 0.2 1.5 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.2 3.9e-10 6.3e-06 3 39 .] 39 75 .. 38 75 .. 0.97 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 3.9e-10 zf-H2C2 3 ltHlGinkltallarkyhwlgiketvseVissCkaCq 39 tHlG++ l++ll ++++ ++++++++V++ C++C+ T062242_3 39 ATHLGQESLEKLLGWYFYISHLSALAKTVTQWCVTCR 75 69**********************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 4968.31 // Query: T296542_1 [L=1335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 525 (0.0321967); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 6261.00 // Query: T296542_2 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 5782.34 // Query: T296542_3 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 558 (0.0342205); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 5782.34 // Query: T171283_1 [L=3873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.73 # Mc/sec: 15178.07 // Query: T171283_2 [L=3872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-116 388.9 16.5 2.6e-116 388.4 16.5 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 1.1 9.3 5.1 1.8 8.5 5.1 1.3 1 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 388.4 16.5 3.2e-120 2.6e-116 58 368 .] 504 786 .. 490 786 .. 0.89 Alignments for each domain: == domain 1 score: 388.4 bits; conditional E-value: 3.2e-120 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHH CS Transposase_22 58 kelkelieskakelealkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleerv 152 ++lke k+ +++k l e t +d + k+ + +e++t++++ sls ++d+ ee+v T171283_2 504 SKLKE----------------------------DVRIHHKEAGNLEKRLDEWLTIIDSVEKTLN-DLIELKTMAQKLRDECRSLSIQCDQQEEKV 569 44444............................4444445555555666666666666666655.45566666666665566************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS CS Transposase_22 153 saaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskras 247 s + +++e+++e k+r+k +k++eqslq+i+d+vkrPnlrliGv+es+ e+ +klen+l++ii+enfPnl+++a+++iqei+rtP+r++s+ra+ T171283_2 570 SVIV-KMNEMKQEEKFRDKIIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENRTKLENTLQDIIQENFPNLARQADIQIQEIQRTPQRYSSRRAT 663 *885.8***************************************************************************************** PP --EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHT CS Transposase_22 248 srhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdyls 342 +rhiivr+tkv++k+k+l+a+rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPa ls+i++Geik f dk+ lrd+++ T171283_2 664 PRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPANLSFISEGEIKSFTDKQILRDFVT 758 *********************************************************************************************** PP T-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 343 trPalkrllke..knerkdryqaleqar 368 trPal++llke ++er++ yq+l++++ T171283_2 759 TRPALQELLKEalNMERNNWYQSLQKHA 786 *************************996 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.1 0.00023 1.8 113 178 .. 505 570 .. 495 583 .. 0.64 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00023 ATG16 113 elqkleeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +l+++ + +++ +l++ +e + + +++ + l e++++ q l+DE +L +q+ q+Eek T171283_2 505 KLKEDVRIHHKEAGNLEKRLDEWLTIIDSVEKTLNDLIELKTMAQKLRDECRSLSIQCDQQEEKVS 570 33444444444444444444444444455555556689999**********************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 586 (0.0359377); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.79u 0.38s 00:00:02.17 Elapsed: 00:00:00.79 # Mc/sec: 14021.69 // Query: T171283_3 [L=3872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.38s 00:00:01.77 Elapsed: 00:00:00.72 # Mc/sec: 15384.91 // Query: T233999_1 [L=8279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 577 (0.0353857); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.48u 0.55s 00:00:04.03 Elapsed: 00:00:01.05 # Mc/sec: 22556.96 // Query: T233999_2 [L=8279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.52u 0.48s 00:00:03.00 Elapsed: 00:00:00.92 # Mc/sec: 25744.36 // Query: T233999_3 [L=8279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.46s 00:00:02.58 Elapsed: 00:00:00.77 # Mc/sec: 30759.50 // Query: T160440_1 [L=3093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.70 # Mc/sec: 12640.78 // Query: T160440_2 [L=3093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-42 144.0 28.5 4.1e-36 124.5 10.9 3.1 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 7.0 6.2e-10 1e-05 8 102 .. 662 764 .. 656 769 .. 0.90 2 ! 124.5 10.9 2.5e-40 4.1e-36 145 269 .. 772 896 .. 772 899 .. 0.95 3 ! 1.5 0.0 0.006 98 286 315 .. 912 942 .. 910 948 .. 0.68 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 6.2e-10 .XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX...... CS Transposase_22 8 tnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntekqlkiikekq 92 ++++nsk + +s+P++++++ P+ ++++ +++ +el + ++k+ ++ elke + +++ke + k ++e n e+ ++ + e + T160440_2 662 QPKNTENSKGQRASSPPNDRNTPPER--QQNWTEDKTDELTEVGFKRwviENSAELKEHVLTQCKEAKnLHKSLKEtltritNLERNVNDLMELK 754 4589********************99..9*****************97767899*************9899999999999999999999999999 PP .......... CS Transposase_22 93 entskqvmem 102 +nt++++ e T160440_2 755 KNTAQELCEA 764 9999988775 PP == domain 2 score: 124.5 bits; conditional E-value: 2.5e-40 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTTEEE..EES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEE CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqviqd.tvkrPnlr..liGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyr 236 i++ ee +s ed+ ei + k rekr+k++eqslq+i+d kr l liGv e + ++++klenil++ii+enf n+ ++an+++qei+r T160440_2 772 INQAEESISEFEDHPAEIRHANKIREKRMKRNEQSLQEIWD*V-KR--LNl*LIGVHEGDRKNGNKLENILQDIIQENFSNVTRQANMQVQEIQR 863 6899************************************998.45..553449***************************************** PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHH CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavr 269 tP r++ +r+++rhii+r++k+++k+kil++ r T160440_2 864 TPLRYSARRSTTRHIIIRFSKAEMKEKILRTPR 896 ******************************987 PP == domain 3 score: 1.5 bits; conditional E-value: 0.006 ---HHHHH.HHHHHHHHHHHHH.HTT---EEE CS Transposase_22 286 dlsaetlk.arrewtdviqilk.ekkfqPrll 315 dlsaet arr+w ++++ilk e q ++ T160440_2 912 DLSAET-L*ARRDWEPILDILKkEISTQNCIS 942 666666.2369**********72456666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 761 (0.0466699); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.30u 0.32s 00:00:01.62 Elapsed: 00:00:00.70 # Mc/sec: 12640.78 // Query: T160440_3 [L=3093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-19 68.7 0.2 5.8e-19 68.0 0.2 1.3 1 Transposase_22 L1 transposable element 6.5e-12 45.3 0.9 2.1e-07 30.6 0.5 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.0 0.2 7.1e-23 5.8e-19 308 367 .. 933 994 .. 932 995 .. 0.98 Alignments for each domain: == domain 1 score: 68.0 bits; conditional E-value: 7.1e-23 TT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 kkfqPr++y a ls+ ++Gei++f dk++l d+++trPal++llke ++erk+ yq+l+++ T160440_3 933 KKFQPRIVYLANLSFKSKGEIRFFPDKQMLSDFVTTRPALQELLKEalNMERKNWYQSLQKH 994 89**********************************************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.5 2.6e-11 2.1e-07 3 72 .. 1542 1619 .. 1540 1620 .. 0.90 2 ! 12.7 0.0 7.3e-06 0.06 109 158 .. 1657 1706 .. 1654 1722 .. 0.79 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 2.6e-11 -TT......S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEE CS RVT_1 3 Kkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...eellkalkkkkkaklll 72 K+g +++Rpis +++d k+lnk++ ++++++++kl+++nq f +g + + ++ ++++ +++++k +++++ T160440_3 1542 KPGrdttkRENFRPISPMTIDEKILNKILTNQIQQHIKKLIHHNQLSFISGMQGWFNIsk*MNIVYHINRTKDKNHMI 1619 6666666678***************************************************99999999999888775 PP == domain 2 score: 12.7 bits; conditional E-value: 7.3e-06 ...............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 109 lstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 +++ ++++ ++ s ++ + ++q ++lSPllfn++++ l r +r++ T160440_3 1657 MTNSQYHIEWSKAGSIPFENWYKTRQECPLSPLLFNILLEILARAIRQEK 1706 55555555555667788899999************************974 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.67 # Mc/sec: 13206.79 // Query: T051601_1 [L=2810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.77 # Mc/sec: 10440.17 // Query: T051601_2 [L=2809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.89 # Mc/sec: 9029.29 // Query: T051601_3 [L=2809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 10436.46 // Query: T154642_1 [L=1788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.64 # Mc/sec: 7992.44 // Query: T154642_2 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 7303.29 // Query: T154642_3 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 7865.08 // Query: T184393_1 [L=8933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.81u 0.42s 00:00:03.23 Elapsed: 00:00:00.91 # Mc/sec: 28083.29 // Query: T184393_2 [L=8933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 668 (0.0409665); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.10u 0.52s 00:00:04.61 Elapsed: 00:00:01.11 # Mc/sec: 23023.24 // Query: T184393_3 [L=8932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.68u 0.53s 00:00:04.21 Elapsed: 00:00:00.97 # Mc/sec: 26343.23 // Query: T052137_1 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1217 (0.0746351); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 1493.99 // Query: T052137_2 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 655 (0.0401693); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 1470.65 // Query: T052137_3 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.69 # Mc/sec: 1364.08 // Query: T106652_1 [L=1193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 4946.33 // Query: T106652_2 [L=1193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-21 76.6 2.8 1.8e-21 76.6 2.8 3.6 4 ADAM_CR ADAM cysteine-rich 2.3e-16 60.2 26.2 2.3e-16 60.2 26.2 3.2 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -13.8 11.5 2 1.6e+04 16 16 .. 787 787 .. 766 815 .. 0.61 2 ! 76.6 2.8 2.2e-25 1.8e-21 1 109 [. 840 956 .. 840 960 .. 0.86 3 ? 1.6 2.9 0.04 3.3e+02 1 20 [. 964 984 .. 964 990 .. 0.89 4 ? -5.1 5.0 2 1.6e+04 4 27 .. 988 1011 .. 986 1017 .. 0.60 Alignments for each domain: == domain 1 score: -13.8 bits; conditional E-value: 2 ADAM_CR 16 k 16 + T106652_2 787 T 787 2 PP == domain 2 score: 76.6 bits; conditional E-value: 2.2e-25 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatviqt 92 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ + T106652_2 840 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNILVH 938 9**************************************999975.4699****98444355699********************955345555999999 PP ADAM_CR 93 kiknkeCvgidvh.eedv 109 +ik+++C+g+++h ++d T106652_2 939 DIKEEKCFGYEAHqGTDL 956 9999*******9745555 PP == domain 3 score: 1.6 bits; conditional E-value: 0.04 ADAM_CR 1 dgtpCke.ayCykgkCktrde 20 dg +C +yC+k +C+++++ T106652_2 964 DGATCGPgSYCLKHNCTSYQD 984 899**999********99875 PP == domain 4 score: -5.1 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106652_2 988 ECDLKTCnYKGVCNNK-KHCHCLHG 1011 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.2 26.2 2.8e-20 2.3e-16 2 76 .] 764 835 .. 763 835 .. 0.95 2 ? -2.4 1.4 0.98 8e+03 33 52 .. 844 862 .. 838 880 .. 0.51 3 ? 0.3 8.3 0.14 1.2e+03 29 71 .. 964 1005 .. 942 1011 .. 0.77 Alignments for each domain: == domain 1 score: 60.2 bits; conditional E-value: 2.8e-20 Disintegrin 2 egEeCDcGsteeckkdkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 + EeCDcGs ++c +d+CC+ ++C+l+ g+ C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106652_2 764 QREECDCGSLKDCASDRCCE-TSCTLSLGSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 835 68******************.9*****************.7************6.556***************97 PP == domain 2 score: -2.4 bits; conditional E-value: 0.98 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106652_2 844 CSAvSVCIRGNCS--DRDMQC 862 3322333333332..222222 PP == domain 3 score: 0.3 bits; conditional E-value: 0.14 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106652_2 964 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 1005 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 5171.17 // Query: T106652_3 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-16 60.6 0.0 3.8e-16 59.5 0.0 1.5 2 Pep_M12B_propep Reprolysin family propeptide 4.3e-15 56.0 0.5 6.8e-15 55.4 0.5 1.2 1 Reprolysin Reprolysin (M12B) family zinc metalloproteas 0.0053 16.8 0.8 0.0089 16.1 0.8 1.2 1 Reprolysin_5 Metallo-peptidase family M12 0.0058 17.0 0.2 0.0099 16.3 0.2 1.3 1 Reprolysin_3 Metallo-peptidase family M12B Reprolysin-lik ------ inclusion threshold ------ 0.13 11.8 0.0 0.2 11.1 0.0 1.2 1 Reprolysin_4 Metallo-peptidase family M12B Reprolysin-lik Domain annotation for each model (and alignments): >> Pep_M12B_propep Reprolysin family propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.5 0.0 1.2e-19 3.8e-16 3 125 .. 389 495 .. 382 514 .. 0.86 2 ? -4.0 0.0 4.5 1.5e+04 35 63 .. 540 568 .. 519 574 .. 0.65 Alignments for each domain: == domain 1 score: 59.5 bits; conditional E-value: 1.2e-19 Pep_M12B_propep 3 viPvrvdeegeflshelkkkrrrRslseeeekeerlsyrlkafgkefhLnLeknsellapgftvetrredgeereespeeeehCyYqGtvrgep 96 viP++v +rR e +++lsy+++++g++++++++++++++ +++ v+t +++g +e+ p + ++CyY +++g p T106652_3 389 VIPRKVP--------------HRRGG-VE--MPDQLSYSMHFRGRRHVIHMKLKKNMMPRHLPVFTNNDQGAMQENYPFVPRDCYYDCYLEGVP 465 4444444..............23333.22..369*********************************999999999999999************ PP Pep_M12B_propep 97 gssvalstCsG.lrGvirteneeYfIePle 125 gs ++l tC G lrG++++++ +Y I+Ple T106652_3 466 GSVATLDTCRGgLRGMLQVDDLTYEIKPLE 495 *********9659****************7 PP == domain 2 score: -4.0 bits; conditional E-value: 4.5 Pep_M12B_propep 35 eerlsyrlkafgkefhLnLeknsellapg 63 +e y +++ k+++L+ + ++l+ ++ T106652_3 540 REGHVYLWRHHRKNLKLHYTVTNGLFMQN 568 46666777778888888888777777655 PP >> Reprolysin Reprolysin (M12B) family zinc metalloprotease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.4 0.5 2.1e-18 6.8e-15 4 187 .. 555 733 .. 552 742 .. 0.86 Alignments for each domain: == domain 1 score: 55.4 bits; conditional E-value: 2.1e-18 EEEEEE-HHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEE-SS--SS---SSHHHHHHHHHHHHHHCTTTS-..SEEEEEESS.--STT CS Reprolysin 4 elfivvdkklfkkmgsdveavrqkvlevvnlvnkiykelnirvvLvglEiWsdedkievskdaeetLeeflkwkeellkkrkkhdaaqLlsgk.efekk 101 +l+ v + lf+++ ++ ++ ++v+ + ++ +i+k + ++v + l iW+d+d + + a+ ++ ef +wk +++ +hd+ ++++ + + T106652_3 555 KLHYTVTNGLFMQNP-NMSHIIENVVIINSIIHTIFKPVYLNVYVRVLCIWNDMDIVMYNMPADLVVGEFGSWKYYEWFSQIPHDTSVVFTSN*L-GN- 650 566666777776655.9999*****************************************************************9988876553.33. PP --EEE-TT-TTSTTTSEEEEE--SSSHHHHHHHHHHHHHHHCT---GHHTTS--STTS-BTTST.TTTS---C--HHHHHHHHHHC CS Reprolysin 102 tvGaayvgglCskeksggvaedkkknlealavilaqeLghnlGlthdeekeCkceekgvCiMneeagsssgvkFskcsiedfeqfl 187 + a ++g+C+++ ++ + + +l a++ a+ Lghn+Gl+hd+ +C+c ++++ +M++ + + s+cs e ++ + T106652_3 651 SECYASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHDSV-GCYCFRRTNYLMAP--VPDLNDMMSNCSYEIIQRKF 733 46899********88887777777999999*******************.9****9*******9..66667799****98766655 PP >> Reprolysin_5 Metallo-peptidase family M12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.8 2.7e-06 0.0089 140 186 .. 678 713 .. 649 723 .. 0.75 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 2.7e-06 Reprolysin_5 140 atevqvvaHElGHnfGavHDcdsssesqsCslsnstepaggryiMap 186 + v+aH lGHn+G +HD + C ++ ++ +y+Map T106652_3 678 FRGACVTAHALGHNMGLRHDSVG------C-----YCFRRTNYLMAP 713 466789**************994......4.....345699999998 PP >> Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.2 3e-06 0.0099 81 124 .] 654 697 .. 640 697 .. 0.91 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 3e-06 Reprolysin_3 81 lAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfganHt 124 +A + ++cn++++a +++ ++ ga ++aH +GHn+g++H+ T106652_3 654 YASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHD 697 588899*******999999988888999***************7 PP >> Reprolysin_4 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 6.1e-05 0.2 138 193 .. 683 730 .. 674 737 .. 0.85 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 6.1e-05 Reprolysin_4 138 ifAHEiGHtfGaaHdlsdegeglsskteegsgqtIMsyaseasqeafapisirlia 193 + AH GH++G+ Hd + g+ ++ + +++M+++ + +++++++s ++i T106652_3 683 VTAHALGHNMGLRHD--SVGC-----YCFRRTNYLMAPVPDL-NDMMSNCSYEIIQ 730 57************9..4678.....89999*******9876.5899999999984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 5166.83 // Query: T268138_1 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-22 80.1 0.0 2.1e-22 79.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 9.4e-11 42.0 0.0 1.8e-10 41.0 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 2.6e-26 2.1e-22 1 222 [] 26 198 .. 26 198 .. 0.94 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 2.6e-26 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yR++ d++++n+ ++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T268138_1 26 VPKPGTKDYRTV----QDLRLVNQTTVT---------LHPTVPNPYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 100 69*********7....7***********.........88888888888555............45788******************************98 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinp 200 g+ +++y++++lpqG+++ P++f ++ + l+++ + g++ll+Y+D +l+ +++ + + +a+ ++l+++++k+++ T268138_1 101 -------------------GSGVTTQYTWTRLPQGFKNYPTIFGEVLARDLQKFPAKDLGCVLLQYVDNLLLGHSTADGYAKGTDALLRHLEDCEYKMSK 181 ...................7788***********************999999999998****************************************** PP GG-EEE.....ESSEEETTEEE CS RVT_1 201 eKtklvlfsgkseevkyLGvtl 222 +K +++ +++v+yLG+t+ T268138_1 182 KKAQIC-----RQQVRYLGFTI 198 ******.....9********97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.0 0.0 2.3e-14 1.8e-10 5 70 .. 447 512 .. 444 518 .. 0.89 Alignments for each domain: == domain 1 score: 41.0 bits; conditional E-value: 2.3e-14 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES- CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDS 70 +Y+DGs++ +ge++ag+ v+ + + ++pl++ +++++ EL+A++ aL+ + ++++vniytDS T268138_1 447 ELYVDGSSFISpRGERCAGYaVVTLD-DVIEAKPLPQGTSAQKEELIALTRALElS--EGKTVNIYTDS 512 68********978899****777666.34777999*******************55..9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.73 # Mc/sec: 7191.26 // Query: T268138_2 [L=1834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.72 # Mc/sec: 7287.17 // Query: T268138_3 [L=1834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-08 33.9 0.0 6.1e-08 32.7 0.0 1.6 1 rve Integrase core domain 3.5e-07 30.2 0.2 8.4e-07 29.0 0.2 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.0 7.5e-12 6.1e-08 62 117 .. 732 786 .. 724 788 .. 0.92 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 7.5e-12 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++g p+r+ s ng+++++ +++ ++ lg +++++++++p++ GkvE++n+t+k+ T268138_3 732 RFGL-PLRIGSENGPAFVADLVQRTAKVLGLTWKLHAAYQPHSSGKVEQMNQTIKN 786 5666.9************************************************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.2 1e-10 8.4e-07 1 39 [] 653 691 .. 653 691 .. 0.98 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 1e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++++ ++ +++++++++C++C+ T268138_3 653 HETTHLGQESLEKLFSQYFYISHLPALAKTAAQQCVTCR 691 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 7604.00 // Query: T164713_1 [L=2191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 8705.66 // Query: T164713_2 [L=2190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.78 # Mc/sec: 8032.33 // Query: T164713_3 [L=2190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.82 # Mc/sec: 7640.51 // Query: T182998_1 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 28.1 0.2 1.1e+02 3.0 0.0 7.6 9 DUF3809 Protein of unknown function (DUF3809) 0.0014 18.6 0.3 55 3.8 0.0 5.5 5 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-te Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.079 6.5e+02 96 121 .. 1079 1104 .. 1074 1108 .. 0.83 2 ? 0.5 0.0 0.077 6.3e+02 89 120 .. 1116 1147 .. 1111 1148 .. 0.83 3 ? 2.8 0.0 0.015 1.3e+02 89 121 .. 1160 1192 .. 1155 1195 .. 0.88 4 ? 2.0 0.0 0.025 2.1e+02 89 121 .. 1204 1236 .. 1198 1240 .. 0.89 5 ? 1.0 0.0 0.053 4.3e+02 94 121 .. 1253 1280 .. 1243 1283 .. 0.81 6 ? 2.7 0.0 0.015 1.3e+02 89 121 .. 1292 1324 .. 1287 1328 .. 0.89 7 ? 0.8 0.0 0.061 5e+02 92 121 .. 1339 1368 .. 1330 1373 .. 0.81 8 ? 3.0 0.0 0.013 1.1e+02 89 121 .. 1380 1412 .. 1375 1416 .. 0.89 9 ? -1.5 0.0 0.32 2.6e+03 89 121 .. 1424 1456 .. 1413 1457 .. 0.81 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.079 EEEEEEEEEEE-------HHHHHHHH CS DUF3809 96 elayelelrvhlslPegekwGGaAfe 121 +++ + rv+++ Pe+ ++ G Af T182998_1 1079 RVHTPRRQRVYVRAPESTHLAGSAFT 1104 556666779***************96 PP == domain 2 score: 0.5 bits; conditional E-value: 0.077 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182998_1 1116 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 1147 555666778888889****************9 PP == domain 3 score: 2.8 bits; conditional E-value: 0.015 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182998_1 1160 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 1192 677889999999999****************96 PP == domain 4 score: 2.0 bits; conditional E-value: 0.025 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182998_1 1204 ARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 1236 677889999999999****************96 PP == domain 5 score: 1.0 bits; conditional E-value: 0.053 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182998_1 1253 SSRVHRPRRQRVYVRAPESTHLAGSAFT 1280 66677777889***************96 PP == domain 6 score: 2.7 bits; conditional E-value: 0.015 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182998_1 1292 ARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 1324 67788999999999******************7 PP == domain 7 score: 0.8 bits; conditional E-value: 0.061 -CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 92 eeggelayelelrvhlslPegekwGGaAfe 121 +++++++ + rv+++ Pe+ ++ G Af T182998_1 1339 RQSARVHGPRRQRVYVRAPESTHLAGSAFT 1368 5556666677789***************96 PP == domain 8 score: 3.0 bits; conditional E-value: 0.013 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182998_1 1380 ARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 1412 67788999999999*****************96 PP == domain 9 score: -1.5 bits; conditional E-value: 0.32 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + v+l+ Pe+ ++ G Af T182998_1 1424 ARLRQSSRVHAPRRQYVYLRAPESTDLAGSAFT 1456 555666777777778899*************95 PP >> MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.0 0.022 1.8e+02 5 51 .. 1079 1124 .. 1077 1148 .. 0.74 2 ? 3.0 0.0 0.012 99 5 52 .. 1167 1213 .. 1165 1226 .. 0.77 3 ? -0.8 0.0 0.19 1.5e+03 5 32 .. 1211 1238 .. 1207 1254 .. 0.78 4 ! 3.8 0.0 0.0067 55 7 58 .. 1257 1351 .. 1252 1365 .. 0.48 5 ? 1.9 0.0 0.026 2.1e+02 8 52 .. 1346 1389 .. 1341 1481 .. 0.75 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.022 HHHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT- CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqagl 51 +v + r+++ v p +t aGS F+ +++ +aa+L ++a + T182998_1 1079 RVHTPRRQRVYVRAPESTHLAGSAFTSE-LPSPPTSQAARLRQSARV 1124 677889999999999999*******996.443334466666555555 PP == domain 2 score: 3.0 bits; conditional E-value: 0.012 HHHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT-T CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqaglk 52 +v + r+++ v p +t aGS F+ +++ +aa+L e++ ++ T182998_1 1167 RVHAPRRQRVYVRAPESTHLAGSAFTSE-LPSPRTSQAARLRESSRVH 1213 788899****9****99*********97.4443356777777766655 PP == domain 3 score: -0.8 bits; conditional E-value: 0.19 HHHHHHHHHSHHHS--STEEECESB--- CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknP 32 +v + r+++ p +t aGS F+ T182998_1 1211 RVHAPRRQRVYIRAPESTDLAGSAFTSE 1238 688889999988999999*******985 PP == domain 4 score: 3.8 bits; conditional E-value: 0.0067 HHHHHHHSHHHS--STEEECESB---EE.T.............................................EEE-HHHHHHHTT-TT-EETT CS MurB_C 7 lelrasklmvlqpadtpsaGSfFknPvvse............................................evklsaawLIeqaglkGlrlgg 58 + r+++ v p +t aGS F+ +++ +aa+L ++a ++G r ++ T182998_1 1257 HRPRRQRVYVRAPESTHLAGSAFTSE-LPSpptsqaarlressrvhtprrqrvyirapestdlagsafrserpsPRTSQAARLRQSARVHGPRRQR 1351 55566666666666666666666664.222122223333333333333333333333333333333333333332234566666666666666555 PP == domain 5 score: 1.9 bits; conditional E-value: 0.026 HHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT-T CS MurB_C 8 elrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqaglk 52 r+++ v p +t aGS F+ +++ +aa+L e++ ++ T182998_1 1346 GPRRQRVYVRAPESTHLAGSAFTSE-LPSPPTSQAARLRESSRVH 1389 5677777777787778888888875.3332234555555544444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 8640.77 // Query: T182998_2 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 23.8 1.4 8.2 6.5 0.0 6.4 5 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-te 8.4e-05 22.7 0.2 1.3e+02 2.7 0.0 6.5 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.0 1.5 1.2e+04 18 32 .. 1077 1091 .. 1068 1103 .. 0.70 2 ! 4.1 0.1 0.0055 45 24 24 .. 1171 1171 .. 1105 1279 .. 0.65 3 ? 3.2 0.0 0.011 87 5 55 .. 1284 1333 .. 1281 1367 .. 0.75 4 ! 6.5 0.0 0.001 8.2 5 62 .. 1372 1428 .. 1369 1443 .. 0.84 5 ? 1.6 0.0 0.032 2.6e+02 5 32 .. 1416 1443 .. 1412 1463 .. 0.78 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1.5 S--STEEECESB--- CS MurB_C 18 qpadtpsaGSfFknP 32 p +t aGS F+ T182998_2 1077 VPESTHPAGSAFTSE 1091 4667899*****985 PP == domain 2 score: 4.1 bits; conditional E-value: 0.0055 E CS MurB_C 24 s 24 T182998_2 1171 L 1171 2 PP == domain 3 score: 3.2 bits; conditional E-value: 0.011 HHHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT-TT-E CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqaglkGlr 55 +v + r+++ v p +t aGS F+ +++ +aa+L ++a ++ r T182998_2 1284 RVHRPRRQRVYVRAPESTHLAGSAFTSE-LPSPRTSQAARLGQSARVHAPR 1333 6777889999999998999999999986.4443356677776666665544 PP == domain 4 score: 6.5 bits; conditional E-value: 0.001 HHHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT-TT-EETTEEE- CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqaglkGlrlggaavs 62 +v + r+++ v p +t aGS F+ +++ +aa+L ++a ++G r +++ v T182998_2 1372 RVHRPRRQRVYVRAPESTHLAGSAFTSE-LPSPRTSQAARLRQSARVHGPRRQRVYVR 1428 67888999999999*999*********8.555457899*********99998888775 PP == domain 5 score: 1.6 bits; conditional E-value: 0.032 HHHHHHHHHSHHHS--STEEECESB--- CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknP 32 +v r+++ v p +t aGS+F+ T182998_2 1416 RVHGPRRQRVYVRAPESTHLAGSTFTSE 1443 56777999999999*999*******985 PP >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.043 3.5e+02 93 121 .. 1105 1133 .. 1078 1138 .. 0.84 2 ? 2.7 0.0 0.016 1.3e+02 89 121 .. 1145 1177 .. 1141 1180 .. 0.88 3 ? 1.6 0.0 0.036 2.9e+02 90 121 .. 1190 1221 .. 1183 1226 .. 0.83 4 ? 1.6 0.0 0.034 2.8e+02 89 121 .. 1233 1265 .. 1229 1269 .. 0.86 5 ? 1.0 0.0 0.053 4.3e+02 94 121 .. 1282 1309 .. 1272 1312 .. 0.81 6 ? 0.4 0.0 0.082 6.7e+02 92 121 .. 1324 1353 .. 1303 1366 .. 0.83 7 ? 1.4 0.0 0.041 3.3e+02 91 121 .. 1367 1397 .. 1342 1402 .. 0.83 8 ? -2.2 0.0 0.53 4.3e+03 92 120 .. 1412 1440 .. 1401 1442 .. 0.78 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.043 CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 93 eggelayelelrvhlslPegekwGGaAfe 121 ++++++ + rv+++ Pe+ ++ G Af T182998_2 1105 QSSRVHRPRRQRVYVRAPESTHLAGSAFT 1133 46677777888****************96 PP == domain 2 score: 2.7 bits; conditional E-value: 0.016 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182998_2 1145 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 1177 677888999999999****************96 PP == domain 3 score: 1.6 bits; conditional E-value: 0.036 EE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 90 eveeggelayelelrvhlslPegekwGGaAfe 121 + ++++++ + rv+++ Pe+ ++ G Af T182998_2 1190 RLPQSSRVHAPRRQRVYVRAPESTHLAGSAFT 1221 55557778888889****************96 PP == domain 4 score: 1.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+l+ Pe+ ++ G Af T182998_2 1233 ARLRQSSRVHAPRRQRVYLRAPESTDLAGSAFT 1265 566678889999999****************96 PP == domain 5 score: 1.0 bits; conditional E-value: 0.053 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182998_2 1282 SSRVHRPRRQRVYVRAPESTHLAGSAFT 1309 66677777889***************96 PP == domain 6 score: 0.4 bits; conditional E-value: 0.082 -CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 92 eeggelayelelrvhlslPegekwGGaAfe 121 ++++++ + rv+++ Pe+ ++ G Af T182998_2 1324 GQSARVHAPRRQRVYVRAPESTDLAGSAFM 1353 4456677777889***************94 PP == domain 7 score: 1.4 bits; conditional E-value: 0.041 E-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 91 veeggelayelelrvhlslPegekwGGaAfe 121 ++++++ + rv+++ Pe+ ++ G Af T182998_2 1367 LPQSSRVHRPRRQRVYVRAPESTHLAGSAFT 1397 4456777778889****************96 PP == domain 8 score: -2.2 bits; conditional E-value: 0.53 -CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 92 eeggelayelelrvhlslPegekwGGaAf 120 +++++++ + rv+++ Pe+ ++ G f T182998_2 1412 RQSARVHGPRRQRVYVRAPESTHLAGSTF 1440 55566666677899*********999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 6762.34 // Query: T182998_3 [L=1630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00048 20.3 0.3 1.5e+02 2.5 0.0 6.6 8 DUF3809 Protein of unknown function (DUF3809) ------ inclusion threshold ------ 0.046 13.7 0.3 1.8e+02 2.2 0.0 5.3 5 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-te Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.045 3.7e+02 90 121 .. 1087 1118 .. 1084 1121 .. 0.85 2 ? 0.6 0.0 0.073 6e+02 94 120 .. 1135 1161 .. 1125 1162 .. 0.81 3 ? 2.5 0.0 0.018 1.5e+02 89 120 .. 1174 1205 .. 1170 1206 .. 0.86 4 ? 1.1 0.0 0.048 3.9e+02 90 121 .. 1219 1250 .. 1214 1254 .. 0.82 5 ? 0.5 0.0 0.077 6.3e+02 89 120 .. 1262 1293 .. 1257 1294 .. 0.83 6 ? 0.4 0.0 0.083 6.8e+02 89 120 .. 1350 1381 .. 1325 1382 .. 0.75 7 ? 1.1 0.0 0.05 4.1e+02 89 121 .. 1394 1426 .. 1390 1429 .. 0.85 8 ? -3.5 0.0 1.3 1e+04 102 120 .. 1451 1469 .. 1440 1471 .. 0.79 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.045 EE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 90 eveeggelayelelrvhlslPegekwGGaAfe 121 + +++++++ + rv+l+ Pe+ ++ G Af T182998_3 1087 RLRQSSRVHAPRRQRVYLRAPESTDLAGSAFT 1118 55667888888899****************96 PP == domain 2 score: 0.6 bits; conditional E-value: 0.073 CCEEEEEEEEEEE-------HHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAf 120 +++++ + rv+++ Pe+ ++ G Af T182998_3 1135 SSRVHRPRRQRVYVRAPESTHLAGSAF 1161 66677777889***************9 PP == domain 3 score: 2.5 bits; conditional E-value: 0.018 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + + rv+l+ Pe+ ++ G Af T182998_3 1174 ARLRQSARVHASRRQRVYLRAPESTHLAGSAF 1205 566667889999999****************9 PP == domain 4 score: 1.1 bits; conditional E-value: 0.048 EE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 90 eveeggelayelelrvhlslPegekwGGaAfe 121 + +++++++ + rv+++ Pe+ ++ G Af T182998_3 1219 RLHQSSRVHGPRRQRVYVRAPESTHLAGSAFT 1250 55556777777788****************96 PP == domain 5 score: 0.5 bits; conditional E-value: 0.077 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182998_3 1262 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 1293 555666778888889****************9 PP == domain 6 score: 0.4 bits; conditional E-value: 0.083 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ ++++++ + rv+l+ Pe+ ++ G Af T182998_3 1350 ARLCQSARVHAPRRQRVYLRAPESTDLAGSAF 1381 5555566777778889***************9 PP == domain 7 score: 1.1 bits; conditional E-value: 0.05 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182998_3 1394 ARLHQSSRVHAPRRQRVYVRAPESTDLAGSAFT 1426 555667888888899****************96 PP == domain 8 score: -3.5 bits; conditional E-value: 1.3 EEEEE-------HHHHHHH CS DUF3809 102 elrvhlslPegekwGGaAf 120 + rv+++ Pe+ ++ G f T182998_3 1451 RQRVYVRAPESTHLAGSVF 1469 679999*****99999877 PP >> MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.0 0.083 6.8e+02 7 32 .. 1095 1120 .. 1091 1162 .. 0.51 2 ? -0.4 0.0 0.14 1.1e+03 4 30 .. 1180 1206 .. 1175 1237 .. 0.75 3 ? 1.7 0.0 0.031 2.5e+02 6 51 .. 1226 1270 .. 1223 1322 .. 0.73 4 ? -1.4 0.0 0.28 2.3e+03 23 54 .. 1331 1361 .. 1324 1382 .. 0.51 5 ? 2.2 0.0 0.022 1.8e+02 4 29 .. 1444 1469 .. 1399 1477 .. 0.55 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.083 HHHHHHHSHHHS--STEEECESB--- CS MurB_C 7 lelrasklmvlqpadtpsaGSfFknP 32 + r+++ p +t aGS F+ T182998_3 1095 HAPRRQRVYLRAPESTDLAGSAFTSE 1120 55566666666666666667766653 PP == domain 2 score: -0.4 bits; conditional E-value: 0.14 HHHHHHHHHHSHHHS--STEEECESB- CS MurB_C 4 eavlelrasklmvlqpadtpsaGSfFk 30 ++v + r+++ p +t aGS F+ T182998_3 1180 ARVHASRRQRVYLRAPESTHLAGSAFT 1206 6789999999999999999*******7 PP == domain 3 score: 1.7 bits; conditional E-value: 0.031 HHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT- CS MurB_C 6 vlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqagl 51 v r+++ v p +t aGS F+ +++ +aa+L ++a + T182998_3 1226 VHGPRRQRVYVRAPESTHLAGSAFTSE-LPSPPTSQAARLRQSARV 1270 666688999999999999999999985.333223455555555544 PP == domain 4 score: -1.4 bits; conditional E-value: 0.28 EEECESB---EE.T.EEE-HHHHHHHTT-TT- CS MurB_C 23 psaGSfFknPvvseevklsaawLIeqaglkGl 54 aGS F+ + +aa+L ++a ++ T182998_3 1331 HLAGSAFTSERP-SPRTSQAARLCQSARVHAP 1361 556666665311.2223455666555555433 PP == domain 5 score: 2.2 bits; conditional E-value: 0.022 HHHHHHHHHHSHHHS--STEEECESB CS MurB_C 4 eavlelrasklmvlqpadtpsaGSfF 29 ++v + r+++ v p +t aGS+F T182998_3 1444 SRVHRPRRQRVYVRAPESTHLAGSVF 1469 33444455555555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.70 # Mc/sec: 6661.65 // Query: T256298_1 [L=1782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-21 76.7 6.7 3.3e-21 75.9 6.7 1.3 1 GP41 Retroviral envelope protein 1e-05 25.6 0.0 1.9e-05 24.7 0.0 1.4 1 rve Integrase core domain 1.6e-05 24.6 0.4 4.3e-05 23.2 0.4 1.8 1 Integrase_Zn Integrase Zinc binding domain ------ inclusion threshold ------ 0.086 12.9 0.0 0.18 11.9 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.9 6.7 8.1e-25 3.3e-21 1 173 [. 1044 1210 .. 1044 1223 .. 0.84 Alignments for each domain: == domain 1 score: 75.9 bits; conditional E-value: 8.1e-25 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH...........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvla.lGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 +aavsla ++++a +vn + +nv++ ++Q +idk + r++ale + lG+ ++ t+++l+C +y+ iC+ ++pyn+ + +Wervk+hl+g T256298_1 1044 TAAVSLAESIHTASVVNHMVYNVTHEFQEQVNIDKTILSRLKALEAS-VM*LGNLQQAFITRQNLHCDWQYNSICIIPLPYNSFQyNWERVKAHLQGA 1140 589******************************************99.457799899999************************************** PP HHXH...HHHHHHHHHHHHHHHHHH.HCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 97 Wnnt...evsldlsklhneiediqn.qqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 +++ ++s + +l++ +e+ ++ q tlq+l+ +++++ W+s+ l + i ++ ++l +l +++ll T256298_1 1141 YHDHlssQISTLECELKKRLEEWSQ*LQTSTLQQLQ-------EGFQWLNPNTWLSG--LNIRIWMMAAVL--ILFCICLL 1210 *998899***************99887877877333.......34457777779997..555554444443..44455555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 4.7e-09 1.9e-05 4 60 .. 352 406 .. 350 414 .. 0.90 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 4.7e-09 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastviallerava 60 p+ +wq+D+t ++ + g++++l+v +d++++li+a ++e+++++v++l++ ++a T256298_1 352 PNAIWQTDATQYPPF--GRFKFLHVTVDTYTGLIHATLQTREKTKDAVAHLFKSIIA 406 89********99956..557**********************999999998887765 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.4 1.1e-08 4.3e-05 11 37 .. 307 333 .. 307 334 .. 0.98 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.1e-08 Integrase_Zn 11 NakaLrkkFkitreqAreIVqsCptCq 37 Na++L+++F++t q r I+++Cp+Cq T256298_1 307 NARSLKQQFHLTFIQTRLIIKTCPDCQ 333 9*************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 4.3e-05 0.18 3 64 .. 150 209 .. 149 213 .. 0.64 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4.3e-05 SEEEEEEEEEECTTTEEEEEE.EECTT....EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEE CS RNase_H 3 avvvYtDGsclgnsgeggaga.vlykeg..arnisapleeaqtnnraELsAvieaLkalksdekv 64 a++v+tDGs ++++ + + + + ++s+++ +t ++aEL A+i aL++ ++++ T256298_1 150 ATTVFTDGSKKKKKWKK--QL*CGKMPCrtGSTKSRSIL--KTTQQAELGALILALQTF-PHQDI 209 689******66554333..33333322111346666665..9***************83.44555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 8357.38 // Query: T256298_2 [L=1782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 8357.38 // Query: T256298_3 [L=1782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.60 # Mc/sec: 8496.67 // Query: T236092_1 [L=962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 831 (0.0509628); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 4745.03 // Query: T236092_2 [L=962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1071 (0.0656813); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 4511.67 // Query: T236092_3 [L=962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1002 (0.0614498); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 4586.86 // Query: T316515_1 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.67 # Mc/sec: 7181.96 // Query: T316515_2 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.79 # Mc/sec: 6091.03 // Query: T316515_3 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 8155.79 // Query: T189457_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.64 # Mc/sec: 8680.83 // Query: T189457_2 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-86 290.1 4.1 1.8e-86 290.1 4.1 2.0 2 Transposase_22 L1 transposable element 8e-07 29.2 0.0 2.2e-06 27.8 0.0 1.8 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.2e-05 24.1 1.8 6.4e-05 22.7 1.8 1.8 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 290.1 4.1 3.4e-90 1.8e-86 190 367 .. 546 725 .. 539 726 .. 0.99 2 ? -5.7 4.2 2.7 1.5e+04 71 116 .. 1052 1100 .. 1014 1163 .. 0.56 Alignments for each domain: == domain 1 score: 290.1 bits; conditional E-value: 3.4e-90 TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEE CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirlt 284 Pnl liGv+es+ e+++klen+l++ii+ nfPnl+ +an++iqei+r P+ ++ +ra++rhii+r+tkv++k+k+l+a+rekG+ t kGkPirlt T189457_2 546 PNLHLIGVPESDRENGTKLENTLQDIIQKNFPNLASQANIQIQEIQRMPQTYSLRRATPRHIIIRLTKVEMKEKMLRAAREKGHFTHKGKPIRLT 640 9********************************************************************************************** PP E---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 285 adlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +l aetl+arrew+++++ilkek+fqPr++yPakls+i++Geik f k++lr + +t Pa+++llke ++er+++yq+l+++ T189457_2 641 RNLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTYKQMLRYFATTTPAFQELLKEalHMERNNQYQPLQKH 725 *********************************************************************999***********98 PP == domain 2 score: -5.7 bits; conditional E-value: 2.7 XXXXXXXXX.....XXXXXXX..................XXXXXXXXXXXX CS Transposase_22 71 lealkekee.....ntekqlkiikekqentskqvmemnkellelktkvdel 116 l+a k k+e ql+ ekqe+t+ + + + +++k++el T189457_2 1052 LNAHKRKQErskidTLPPQLE-ELEKQEQTNSKTS-RRQIITKIRAKMKEL 1100 445555555444422223444.3334443332221.122222333333333 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.0 4e-10 2.2e-06 1 113 [] 761 980 .. 761 980 .. 0.73 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 4e-10 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...............................EEEEEEESSSTTSSE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...............................dadaskfgtgkgqgg 65 lt Nvng ++ + +++ la+++k++d+ v ++qE++ ++ +l+ + T189457_2 761 LTLNVNG----LNAPIKRQTLANWIKSQDPLVCCIQETHLTCKDTHRLKIkgwrniqkqiqkakksrgcdpsl**nrl*tnK-------------- 838 699****....7778999*******************999998887777788877776666666666666666666666431.............. PP E.............EEEECSEEEEE...........................EEEEEE-SS................................... CS x.............xxxxxxxxxxx...........................xxxxxxxxx................................... RF Exo_endo_phos 66 v.............avlsrfpltsl...........................vivlGDfNa................................... 86 + r+ + i++GDfN+ T189457_2 839 DqkrqrrplhngkgINATRRANY-Pkyictq*rstqivkqvlrdl*rdldshTIITGDFNTslstldrstrqkinkdiqdlnstldqvdlidiyrt 933 02222222222222223333332.1345777777777888888889999999*********99999999999999999999998888888888888 PP ...................-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ...................xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ...................rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + ++ SDH T189457_2 934 lhpkstgytffsaphcpysKIDHIIGSKTLLSKCKRTEIITDSlSDH 980 888888888888888888888******96655555555555557999 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 1.8 1.2e-08 6.4e-05 33 118 .. 889 983 .. 884 984 .. 0.85 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 1.2e-08 Exo_endo_phos_2 33 kiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ssiiDltltsdnlaks..leleeedlgSDHrp 117 ++ii+GDfN + +++++ ++ ++L ++l++ +l + ++k++ tf s + s iD ++ s++l+ + ++ +d++SDH++ T189457_2 889 HTIITGDFNTSLSTLDRSTRQKiNKDIQDLNSTLDQVDLIDIyrtLHPKSTgYTFFSAPHcpYSKIDHIIGSKTLLSKckRTEIITDSLSDHSA 982 89*************99888879***************9965666444555599988888889***************98667779******99 PP Exo_endo_phos_2 118 i 118 i T189457_2 983 I 983 8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 839 (0.0514535); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:00.79 # Mc/sec: 7028.95 // Query: T189457_3 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-19 70.8 0.0 2.1e-19 69.8 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.8 0.0 1.3e-23 2.1e-19 100 209 .. 1373 1493 .. 1370 1524 .. 0.91 Alignments for each domain: == domain 1 score: 69.8 bits; conditional E-value: 1.3e-23 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHH CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleav 187 ++++i++++ ++++++ +n+++ e ++ k+g++ G++lSPllfn++++ l r +r++ ++v+l+++aD +l++ ++ ++ +ll+ + T189457_3 1373 CILKIIRAIYDKPTANIILNWQKLEAFPLKTGTRHGCPLSPLLFNIVLEVLVRAIRQEKeikgiqlgkEEVKLSLFADGMLVHLENpIVSALNLLKLI 1470 6789******************99*********************************99***************************6677******** PP HHHHHHTT--BEGGG-EEE.... CS RVT_1 188 eewlkesglkinpeKtklvlf.s 209 +++ k sg+kin +K++++l+ + T189457_3 1471 SNFSKVSGYKINVQKSQAFLYtN 1493 *******************8742 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.80 # Mc/sec: 6941.09 // Query: T291137_1 [L=4392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-45 155.2 2.5 2.4e-45 154.6 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0029 17.4 1.0 0.0029 17.4 1.0 2.0 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 154.6 2.5 3e-49 2.4e-45 1 222 [] 3812 4068 .. 3812 4068 .. 0.92 Alignments for each domain: == domain 1 score: 154.6 bits; conditional E-value: 3e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291137_1 3812 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 3909 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291137_1 3910 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 4007 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291137_1 4008 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 4068 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.33 2.7e+03 16 28 .. 180 192 .. 179 192 .. 0.92 2 ! 17.4 1.0 3.5e-07 0.0029 25 48 .. 2891 2914 .. 2888 2917 .. 0.90 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.33 HSBP1 16 dkFqtmsdqilsr 28 kFq+ s++il+r T291137_1 180 AKFQKTSHEILQR 192 59*********97 PP == domain 2 score: 17.4 bits; conditional E-value: 3.5e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291137_1 2891 LEKRLDKMLTRITSLEKNINDLMQ 2914 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.52u 0.41s 00:00:01.93 Elapsed: 00:00:00.78 # Mc/sec: 16108.67 // Query: T291137_2 [L=4392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.75 # Mc/sec: 16753.02 // Query: T291137_3 [L=4392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.71 # Mc/sec: 17696.85 // Query: T236372_1 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4046.03 // Query: T236372_2 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 3596.47 // Query: T236372_3 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 435 (0.0266773); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 4275.05 // Query: T346922_1 [L=641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-14 51.8 0.1 1.3e-13 50.5 0.1 1.7 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.03 14.1 0.0 0.08 12.7 0.0 1.8 1 HTH_5 Bacterial regulatory protein, arsR family 0.17 11.7 0.0 0.43 10.4 0.0 1.6 1 MarR_2 MarR family Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 0.1 2.4e-17 1.3e-13 39 79 .. 437 477 .. 407 478 .. 0.92 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 2.4e-17 Transposase_1 39 akgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +++li+y++ ++getitse+Yaqq+d+++qklq+++palvn T346922_1 437 TASLIHYSLPNSGETITSEKYAQQIDEMHQKLQCLQPALVN 477 689************************************98 PP >> HTH_5 Bacterial regulatory protein, arsR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 1.5e-05 0.08 10 39 .. 311 341 .. 309 344 .. 0.83 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.5e-05 HHTT.SSEEHHHHHHHHTS-HHHHHHHHHHH CS HTH_5 10 lLae.gelcvcelaeelglsqstvShHLkkL 39 + e + + e +eel++ stv +HLk+ T346922_1 311 AIIEgDPPTTQEVVEELNVDHSTVIRHLKQI 341 55565678999******************96 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 7.9e-05 0.43 11 43 .. 309 339 .. 308 341 .. 0.90 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 7.9e-05 HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdltvselarrlglsksavsrilk 43 L a+ + ++ t +e+ ++l++++s+v r lk T346922_1 309 LRAIIEGDP--PTTQEVVEELNVDHSTVIRHLK 339 678888998..6******************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 575 (0.0352631); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 2910.78 // Query: T346922_2 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 2953.11 // Query: T346922_3 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-08 32.8 3.6 8.5e-08 31.8 3.6 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 3.6 5.2e-12 8.5e-08 11 40 .. 399 435 .. 399 443 .. 0.96 Alignments for each domain: == domain 1 score: 31.8 bits; conditional E-value: 5.2e-12 Transposase_1 11 Wldkgetpkkvpkpelhq.......kkvmltVwWsak 40 Wld++e pk++pkp+l+q kkvm+tVwWs++ T346922_3 399 WLDQEEVPKHFPKPNLSQkkkkkkkKKVMVTVWWSTA 435 ***********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3736.59 // Query: T089818_1 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 4281.87 // Query: T089818_2 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-43 148.5 0.2 2.7e-43 147.9 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.9 0.2 1.7e-47 2.7e-43 1 177 [. 510 704 .. 510 713 .. 0.96 Alignments for each domain: == domain 1 score: 147.9 bits; conditional E-value: 1.7e-47 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpis++++d k+lnk++a+r+++++++l++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l++ T089818_2 510 IPKPGrdttkKENFRPISVMNIDAKILNKILANRIQQHIKELIHHDQVGFIPGMQGWFNIrksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFMLKT 609 899999999999***************************************************999999999999************************* PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsksk 177 l++++++ k +++i+++++++++++ +ng++ e ++ k+g+ qG++lSP+lfn++++ l r +r++ ++v+l ++aDD++++ +++ T089818_2 610 LNKLGIDGKYLKIIRAIYNKPTANIILNGQKLEAFPLKTGTGQGCPLSPFLFNIVLEVLARAIRQEKeikgiqlgkEEVKLPLFADDMIVYLENP 704 ******************************99*********************************99************************9984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 4013.96 // Query: T089818_3 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.2 0.1 0.035 13.6 0.1 1.2 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 2.1e-06 0.035 66 111 .. 857 902 .. 848 905 .. 0.90 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.1e-06 DUF4417 66 qlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 + +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T089818_3 857 KAGGIMLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 902 4579*****************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 4743.78 // Query: T221663_1 [L=2845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 11969.21 // Query: T221663_2 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 11145.48 // Query: T221663_3 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11791.59 // Query: T277486_1 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.70 # Mc/sec: 11770.27 // Query: T277486_2 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 11604.49 // Query: T277486_3 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 11604.49 // Query: T031622_1 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 8578.16 // Query: T031622_2 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 8450.12 // Query: T031622_3 [L=1978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 8705.73 // Query: T223839_1 [L=1079] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 10.7 44.6 0.2 10.2 44.6 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 0.84 8.2 16.4 1.2 7.6 16.4 1.1 1 Presenilin Presenilin 2.8 7.6 16.7 0.57 9.8 4.4 2.4 2 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 44.6 3.7e-05 0.2 100 185 .. 680 811 .. 674 846 .. 0.44 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 3.7e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX............. CS MIP-T3 100 eeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekere..rekaserekkekkk............. 184 ++k+k+++ +e++ke kke+kk+ +++ +++ +++ +ke +ke+ +++e++ke+ kk+k++k+++ke+++e +e+++er+k++kk+ T223839_1 680 STKKKEEERKERKKERKKERKKEGRKEGRKEGRKEGRKEGKKEEGKKEERKKERRKKEKERKKEKKERKKErkKERKKERKKERKKEy*lgmvaqacsps 779 3333333334444444444444444444444444444444444433333333333333333333333333200333333333333336666666666666 PP ................................ CS MIP-T3 185 ...............................k 185 + T223839_1 780 ytgg*grrllelgssrlq*ativlprsslgyR 811 66666666666666666666666665555441 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 16.4 0.00023 1.2 230 314 .. 686 761 .. 675 809 .. 0.42 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00023 Presenilin 230 ekaevakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeee 314 e+++++k+e+++e++k+ +++ ++++++e ++e ++ee ++e++++e++++e++++ke++e+++++++e+++e+++ T223839_1 686 EERKERKKERKKERKKEGRKEGRKEGRKEGRKEG---------KKEEGKKEERKKERRKKEKERKKEKKERKKERKKERKKERKK 761 1111111111111111111111111111111111.........111111122222222222222111111111111111111111 PP >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 4.4 0.00011 0.57 3 22 .. 701 720 .. 700 722 .. 0.59 2 ? 3.3 4.4 0.012 63 3 22 .. 819 838 .. 818 840 .. 0.67 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00011 Yae1_N 3 reGlaeGkeqglqeGfdeGy 22 +eG +eG+++g eG+ eG T223839_1 701 KEGRKEGRKEGRKEGRKEGK 720 46666666666666666665 PP == domain 2 score: 3.3 bits; conditional E-value: 0.012 Yae1_N 3 reGlaeGkeqglqeGfdeGy 22 +eG +eG+++g + G++ G+ T223839_1 819 KEGRKEGRKEGREGGREGGR 838 57777777777777777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1079 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1896 (0.116276); expected 326.1 (0.02) Passed bias filter: 745 (0.0456887); expected 326.1 (0.02) Passed Vit filter: 346 (0.0212192); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.02u 0.46s 00:00:02.48 Elapsed: 00:00:00.91 # Mc/sec: 3392.13 // Query: T223839_2 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 17.3 43.2 0.002 16.8 43.2 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 ------ inclusion threshold ------ 0.023 13.5 23.0 0.031 13.1 23.0 1.1 1 Mtc1 Maintenance of telomere capping protein 1 1.1 8.6 27.6 1.6 8.0 27.6 1.1 1 DUF1510 Protein of unknown function (DUF1510) 1.5 7.4 6.0 2 6.9 6.0 1.1 1 SAPS SIT4 phosphatase-associated protein 4.7 6.9 16.5 2.9 7.5 2.1 2.3 2 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 43.2 6.3e-07 0.002 87 175 .. 676 766 .. 668 836 .. 0.58 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 6.3e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 87 eskgkaaktkrkkeeknksgkeeesrkekkkeekkkkeekekes..ekerkqkeelkekrrpkekekekekkkkkekdrekekererekas 175 +++++++k+k++++ k+++++e+rke++ke +k+ +++ +++ +kerk+ke +ke+r++k+++k+++k++kke+++e++ker++e+++ T223839_2 676 RPPSPQKRKKKKEKKERKNERKKERRKEGRKEGRKEGRKEGRKErkKKERKKKERKKEERKKKKERKKRKKERKKERKKERKKERKKERKN 766 4455666666666666666666666666666666655555444200222233333333333333333333333333333333333333333 PP >> Mtc1 Maintenance of telomere capping protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 23.0 9.6e-06 0.031 38 144 .. 666 776 .. 664 809 .. 0.54 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 9.6e-06 Mtc1 38 aeLeeLakkesrpaTPrvksnkskkaspkkkksaeepakeekkkeeessedk....rksvestrsleasetpseees..eeqeaekkeeeeeeaeeeead 131 ++L L+k rp P+ +++k++k++ k+++++e+ ++ +k+ ++e + + rk +e +++ +++e+ +++++ ++++++kke+++e+++e++++ T223839_2 666 EFLTSLGK-MARPPSPQKRKKKKEKKERKNERKKERRKEGRKEGRKEGRK-EgrkeRKKKERKKKERKKEERKKKKErkKRKKERKKERKKERKKERKKE 763 57777877.48999998888844444444433333322222222222111.1234566666666555533333333322333334444555555556666 PP Mtc1 132 piasgsgWWgsil 144 ++ WW + T223839_2 764 RKNISWAWWHRPV 776 6666689**8855 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 27.6 0.00048 1.6 40 130 .. 679 769 .. 668 784 .. 0.77 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00048 DUF1510 40 sdeeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenvekavtnpdW 130 s+++ k++++++e ++e++k++ ke +e +e +e +e+++++ +++e +++e +++ke+++ ++e +++ +++ +++ +k+ +n +W T223839_2 679 SPQKRKKKKEKKERKNERKKERRKEGRKEGRKEGRKEGRKERKKKERKKKERKKEERKKKKERKKRKKERKKERKKERKKERKKERKNISW 769 4557777788888888888888787777777777777777777777788888878888888888888888888888888888888888888 PP >> SAPS SIT4 phosphatase-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 6.0 0.00062 2 248 343 .. 690 760 .. 601 780 .. 0.47 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00062 SAPS 248 kerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakd.................enkesdesesdtaeesseededdasse 330 ker ++r++ ++ + + ++ke++++e++++e ++++++++ ++e T223839_2 690 KERKNERKKERR--------------------------------------K----EgrkegrkegrkegrkerKKKERKKKERKKEERKKKKERKKRKKE 747 111111111111......................................1....011112222333333333222222222222222222222222222 PP SAPS 331 esalaeeteeklr 343 ++ + +++ +k r T223839_2 748 RKKERKKERKKER 760 2222222222222 PP >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 2.1 0.00089 2.9 4 18 .. 703 717 .. 701 719 .. 0.49 2 ? 4.8 6.8 0.0064 21 3 23 .. 816 836 .. 815 839 .. 0.73 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00089 Yae1_N 4 eGlaeGkeqglqeGf 18 eG +eG+++g eG+ T223839_2 703 EGRKEGRKEGRKEGR 717 555555555555554 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0064 Yae1_N 3 reGlaeGkeqglqeGfdeGyq 23 +eG + G+++g eG++eG++ T223839_2 816 EEGRKGGRKEGRKEGREEGRE 836 477777888888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2260 (0.138599); expected 326.1 (0.02) Passed bias filter: 808 (0.0495523); expected 326.1 (0.02) Passed Vit filter: 425 (0.026064); expected 16.3 (0.001) Passed Fwd filter: 88 (0.00539679); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.26u 0.48s 00:00:02.74 Elapsed: 00:00:00.88 # Mc/sec: 3504.52 // Query: T223839_3 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.24 10.0 42.1 0.33 9.5 42.1 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 3.1 6.3 17.3 4.3 5.8 17.3 1.1 1 Presenilin Presenilin 4.9 6.8 16.3 0.33 10.6 4.3 2.3 2 Yae1_N Essential protein Yae1, N terminal 6.1 6.4 14.2 8.9 5.8 14.2 1.1 1 AAA_11 AAA domain Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 42.1 8.1e-05 0.33 131 213 .. 681 762 .. 674 852 .. 0.50 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 8.1e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS MIP-T3 131 ekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdk.ekekkkekssksesgkeee 213 +ker++k+ +ke++++++ke ke +k+ +k+ ke ++er +++ r+k++kkk+ +++kk++ e++k+++k++k+e +ke++ T223839_3 681 KKERRRKKRKKERTKERKKEGRKEGRKEGRKEGRKEGRKERRRKERRKKERKKKE--RKRKKERkERKKERKKERKKERKKERK 762 2222222222222222222222222222222222222222222222222222211..111111101111111111111111111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 17.3 0.0011 4.3 239 316 .. 683 761 .. 670 803 .. 0.43 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0011 Presenilin 239 eeeeaekkeeeaseeskeeesee.esseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeee 316 e++++++k+e+++e++ke ++e ++ +k+++++ ++e++++e++++e++++e++++ke++e+++++++e+++e+++e+ T223839_3 683 ERRRKKRKKERTKERKKEGRKEGrKEGRKEGRKEGRKERRRKERRKKERKKKERKRKKERKERKKERKKERKKERKKER 761 1111111222222222222222101112222222222222222222222222222222222222222222222222221 PP >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 4.3 8e-05 0.33 3 23 .. 699 719 .. 698 720 .. 0.80 2 ? 2.0 4.1 0.039 1.6e+02 4 18 .. 818 832 .. 816 837 .. 0.51 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 8e-05 Yae1_N 3 reGlaeGkeqglqeGfdeGyq 23 +eG +eG+++g eG+ eG++ T223839_3 699 KEGRKEGRKEGRKEGRKEGRK 719 688888888888888888886 PP == domain 2 score: 2.0 bits; conditional E-value: 0.039 Yae1_N 4 eGlaeGkeqglqeGf 18 eG +eG+++g G+ T223839_3 818 EGREEGRKEGRKGGR 832 455555555554444 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 14.2 0.0022 8.9 127 187 .. 680 761 .. 630 770 .. 0.54 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0022 AAA_11 127 akeirkeleklakelrafeeeeek.....................ekllkskekskskleqerrklkkerkelskeleqaee 187 +k+ r+++++ +++++++++e +k e+++k+++k+++k+++er++ kkerk+ +k+ +++e+ T223839_3 680 HKKERRRKKRKKERTKERKKEGRKegrkegrkegrkegrkerrrkERRKKERKKKERKRKKERKERKKERKKERKKERKKER 761 3333333333333333333333334444444455555544433323333333333333333333333333333333333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1873 (0.114866); expected 326.1 (0.02) Passed bias filter: 685 (0.0420091); expected 326.1 (0.02) Passed Vit filter: 322 (0.0197473); expected 16.3 (0.001) Passed Fwd filter: 52 (0.00318901); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.85u 0.48s 00:00:02.33 Elapsed: 00:00:00.85 # Mc/sec: 3628.21 // Query: T001703_1 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.75 # Mc/sec: 5618.67 // Query: T001703_2 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.068 13.1 0.0 0.22 11.4 0.0 1.7 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 1.3e-05 0.22 37 82 .. 632 678 .. 616 688 .. 0.79 2 ? -2.5 0.0 0.28 4.5e+03 4 23 .. 840 859 .. 839 867 .. 0.84 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 1.3e-05 HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 37 kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 k+ gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001703_2 632 KRAGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 678 689********************853788888888877777777765 PP == domain 2 score: -2.5 bits; conditional E-value: 0.28 HHTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 4 IengklGevvsvdvwtldtr 23 ++ g++G++ +++ w+ + + T001703_2 840 LRRGSIGKPCMFHFWFNQAF 859 6789*********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 6107.25 // Query: T001703_3 [L=1472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 5768.69 // Query: T248721_1 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 7963.93 // Query: T248721_2 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.67 # Mc/sec: 8791.71 // Query: T248721_3 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 7960.07 // Query: T353819_1 [L=1686] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1686 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 6699.11 // Query: T353819_2 [L=1686] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1686 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 7907.15 // Query: T353819_3 [L=1685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.71 # Mc/sec: 6789.43 // Query: T051376_1 [L=3561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:00.78 # Mc/sec: 13060.79 // Query: T051376_2 [L=3561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.35s 00:00:01.72 Elapsed: 00:00:00.75 # Mc/sec: 13583.22 // Query: T051376_3 [L=3561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:00.85 # Mc/sec: 11985.19 // Query: T236042_1 [L=3646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.42s 00:00:01.76 Elapsed: 00:00:00.80 # Mc/sec: 13038.23 // Query: T236042_2 [L=3646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.77 # Mc/sec: 13546.22 // Query: T236042_3 [L=3646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.65 # Mc/sec: 16047.06 // Query: T324658_1 [L=1780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-16 59.6 36.4 1.5e-14 53.8 9.4 21.5 21 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.3 6.8 1 1.6e+04 6 41 .. 34 77 .. 32 86 .. 0.54 2 ! 20.1 8.9 3.1e-08 0.0005 18 50 .] 195 227 .. 180 227 .. 0.90 3 ! 15.6 2.7 7.8e-07 0.013 17 50 .] 227 260 .. 227 260 .. 0.96 4 ! 53.8 9.4 9.3e-19 1.5e-14 1 50 [] 265 312 .. 265 312 .. 0.99 5 ? -0.3 1.9 0.071 1.2e+03 5 26 .. 313 346 .. 313 348 .. 0.75 6 ! 5.0 11.9 0.0015 25 2 40 .. 343 380 .. 342 403 .. 0.68 7 ? -1.6 0.8 0.18 3e+03 14 42 .. 429 452 .. 424 455 .. 0.55 8 ? -1.4 0.4 0.15 2.5e+03 6 23 .. 548 578 .. 546 589 .. 0.83 9 ? -2.0 1.0 0.25 4.1e+03 6 23 .. 672 702 .. 670 722 .. 0.80 10 ? -7.4 9.8 1 1.6e+04 5 43 .. 731 772 .. 727 776 .. 0.84 11 ? -2.0 2.6 0.24 4e+03 6 24 .. 791 822 .. 789 850 .. 0.75 12 ? -2.6 0.4 0.36 5.9e+03 6 24 .. 893 915 .. 891 919 .. 0.64 13 ? -1.0 1.1 0.12 1.9e+03 6 23 .. 925 955 .. 923 972 .. 0.82 14 ? -0.0 0.7 0.058 9.5e+02 18 46 .. 1059 1091 .. 1044 1092 .. 0.81 15 ? 1.8 3.0 0.016 2.6e+02 7 27 .. 1153 1172 .. 1147 1195 .. 0.89 16 ! 8.3 13.4 0.00014 2.3 14 48 .. 1213 1259 .. 1174 1260 .. 0.77 17 ? -2.7 11.2 0.4 6.6e+03 9 45 .. 1263 1309 .. 1262 1315 .. 0.68 18 ? -0.5 9.2 0.081 1.3e+03 7 26 .. 1314 1333 .. 1312 1368 .. 0.80 19 ? -0.6 1.4 0.089 1.4e+03 21 34 .. 1385 1398 .. 1363 1404 .. 0.58 20 ! 17.3 2.5 2.4e-07 0.0038 3 36 .. 1411 1443 .. 1410 1450 .. 0.91 21 ? -2.7 0.4 0.4 6.5e+03 29 40 .. 1583 1594 .. 1562 1599 .. 0.74 Alignments for each domain: == domain 1 score: -6.3 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............paslqasglsrpsaqLpvAsaGpklppa 41 as+rpL p++ + + + s +L++A+ p+++++ T324658_1 34 ASHRPLSRrersa*apcltpaPPTPREV---SVSPCLTPAP--PTPREV 77 7888887777888855554333333333...3334555554..555444 PP == domain 2 score: 20.1 bits; conditional E-value: 3.1e-08 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsr+ Lpv+s+Gp lpp++ srP +CL T324658_1 195 PQVGLSRTTCSLPVSSPGPALPPGSVSRPDCCL 227 899*****************************9 PP == domain 3 score: 15.6 bits; conditional E-value: 7.8e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A + p+lp+a+L rP+s L T324658_1 227 LPTTSLDSAPAHLLAALVRPQLPQAKLPRPRSGL 260 6889****************************87 PP == domain 4 score: 53.8 bits; conditional E-value: 9.3e-19 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++L ++saGp++p+++ srP CL T324658_1 265 PGSAPALRWRLQAPNGLWSVGSSTPSLGLLATSAGPSRPEVSFSRP--CL 312 9*********************************************..97 PP == domain 5 score: -0.3 bits; conditional E-value: 0.071 DUF4705 5 PasrrpLqa............paslqasglsrps 26 Pas++ L a p+ l++s+++ p T324658_1 313 PASKQALLAqllpssqppl*aPNFLKPSSSGPPT 346 8889988877777777777778888888877775 PP == domain 6 score: 5.0 bits; conditional E-value: 0.0015 DUF4705 2 gpAPasrrpLqapaslqa.sglsrpsaqLpvAsaGpklpp 40 gp asr+p q a l+ ++l r++++Lp As+Gp+l p T324658_1 343 GPPTASRWPVQ--AQLWL*NSLCRTRSCLPGASPGPSLTP 380 77789******..677777777777777777777777733 PP == domain 7 score: -1.6 bits; conditional E-value: 0.18 DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 p++l s ++ + +++a+p+l+++g T324658_1 429 PPTL-----SEVGMSPCLTPAPPTLREVG 452 3444.....44444455555667777776 PP == domain 8 score: -1.4 bits; conditional E-value: 0.15 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ g s T324658_1 548 ASHWPLPC*ersa*apcltlaPPTLREEGVS 578 8999997788888888888889999888877 PP == domain 9 score: -2.0 bits; conditional E-value: 0.25 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l +g s T324658_1 672 ASHRPLSR*erpa*apcltlaPPTLTEVGVS 702 8999998788888888888888888888776 PP == domain 10 score: -7.4 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa......paslqasglsrpsaqLpvAsaGpklppagL 43 as++pL ++ l + p + + +++a+p +++++ T324658_1 731 FASHWPLPR*qrlv*APCLTPA---PPTLTPCLTPAPPRPREVSV 772 5999***889999999999999...88888888888898888875 PP == domain 11 score: -2.0 bits; conditional E-value: 0.24 DUF4705 6 asrrpLqa.............paslqasglsr 24 as++pL p+sl +g s T324658_1 791 ASHWPLPC*ersa*apcltlaPPSLTEVGVSP 822 89999987889999999999999999888874 PP == domain 12 score: -2.6 bits; conditional E-value: 0.36 DUF4705 6 asrrpLqa....paslqasglsr 24 as++pL l+++g+s T324658_1 893 ASHWPLPRrevsVSPLPHTGPSH 915 89999955555544466666665 PP == domain 13 score: -1.0 bits; conditional E-value: 0.12 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ +g s T324658_1 925 ASHWPLPR*ersasapcltlaPPTLREVGVS 955 8999998788888888888888998888877 PP == domain 14 score: -0.0 bits; conditional E-value: 0.058 DUF4705 18 qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 ++ g s++ ++ A+aG p++gL rP T324658_1 1059 PQWGESWAWICPWEATAGLADalllPELGLYRP 1091 66678999999999***9986677899999999 PP == domain 15 score: 1.8 bits; conditional E-value: 0.016 DUF4705 7 srrpLqapaslqasglsrpsa 27 s rpLq + ++++ ls ps+ T324658_1 1153 SSRPLQ-THLQPPGILSGPSS 1172 679***.99999999998886 PP == domain 16 score: 8.3 bits; conditional E-value: 0.00014 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ glsr s+++p As+Gp++ pp+gL rP+s T324658_1 1213 AQVRPHGGLSRLSSCPPTASPGPQRppvggfl*ahlaPPGGLCRPKS 1259 56669********************6666666666666666666665 PP == domain 17 score: -2.7 bits; conditional E-value: 0.4 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl...ppagLsr 45 rpLq ++++++ gl s p+++++ +As++p p +gLsr T324658_1 1263 RPLQ-AQLQPPGGLcmpksysSHPGSGPGrAASWPPRAqlrPLGGLSR 1309 9***.8888888863333333667777765677777777777777777 PP == domain 18 score: -0.5 bits; conditional E-value: 0.081 DUF4705 7 srrpLqapaslqasglsrps 26 s +pLqa ++l++sgl rps T324658_1 1314 SSQPLQAQPLLPPSGLFRPS 1333 679***************98 PP == domain 19 score: -0.6 bits; conditional E-value: 0.089 DUF4705 21 glsrpsaqLpvAsa 34 ++ +s++L+vAs+ T324658_1 1385 SPRPASSRLTVASP 1398 34455666666654 PP == domain 20 score: 17.3 bits; conditional E-value: 2.4e-07 DUF4705 3 pAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 pAPa+++pL q + +++glsrp++ L +As++ T324658_1 1411 PAPACQWPL*aQ---LIPHNGLSRPRFSLLAASWPL 1443 9*******9966...******************986 PP == domain 21 score: -2.7 bits; conditional E-value: 0.4 DUF4705 29 LpvAsaGpklpp 40 LpvA ++p p T324658_1 1583 LPVAQGPPHTPS 1594 788888887764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9608.07 // Query: T324658_2 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-23 82.7 53.6 4.6e-18 65.0 10.4 20.8 22 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.5 0.6 9.8e+03 4 11 .. 64 71 .. 64 83 .. 0.84 2 ? -2.7 8.1 0.41 6.6e+03 18 37 .. 205 224 .. 179 225 .. 0.77 3 ! 3.0 5.3 0.0067 1.1e+02 1 36 [. 221 256 .. 221 256 .. 0.91 4 ! 16.4 2.2 4.4e-07 0.0072 1 26 [. 254 278 .. 254 280 .. 0.95 5 ! 9.2 13.6 8e-05 1.3 1 36 [. 287 365 .. 287 367 .. 0.67 6 ? 1.4 11.3 0.021 3.5e+02 2 27 .. 364 403 .. 363 410 .. 0.68 7 ? -6.4 8.5 1 1.6e+04 4 44 .. 438 481 .. 438 508 .. 0.64 8 ? -3.8 2.1 0.91 1.5e+04 6 18 .. 564 582 .. 562 605 .. 0.59 9 ? -0.6 0.5 0.089 1.4e+03 13 41 .. 659 688 .. 625 691 .. 0.81 10 ? -3.6 4.0 0.75 1.2e+04 5 42 .. 687 727 .. 683 731 .. 0.77 11 ? -2.0 0.3 0.24 3.8e+03 4 22 .. 773 795 .. 773 801 .. 0.63 12 ? -4.1 1.5 1 1.6e+04 6 13 .. 807 814 .. 805 844 .. 0.67 13 ? -5.0 1.3 1 1.6e+04 27 42 .. 873 888 .. 868 891 .. 0.55 14 ? -2.8 0.1 0.44 7.2e+03 13 36 .. 912 936 .. 909 943 .. 0.62 15 ? -2.5 1.2 0.36 5.8e+03 6 14 .. 941 962 .. 937 992 .. 0.58 16 ! 9.0 10.9 9e-05 1.5 18 50 .] 1152 1184 .. 1137 1184 .. 0.86 17 ! 27.5 4.0 1.5e-10 2.5e-06 16 50 .] 1183 1217 .. 1182 1217 .. 0.95 18 ! 65.0 10.4 2.8e-22 4.6e-18 1 50 [] 1222 1271 .. 1222 1271 .. 0.99 19 ! 14.4 6.5 1.8e-06 0.03 20 50 .] 1294 1325 .. 1292 1325 .. 0.90 20 ! 3.0 1.2 0.0065 1.1e+02 27 46 .. 1323 1344 .. 1322 1346 .. 0.75 21 ! 2.6 0.7 0.0089 1.4e+02 29 50 .] 1348 1370 .. 1348 1370 .. 0.86 22 ! 21.1 13.5 1.5e-08 0.00024 3 39 .. 1400 1435 .. 1375 1442 .. 0.78 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.6 DUF4705 4 APasrrpL 11 A as+rpL T324658_2 64 ALASHRPL 71 89*****9 PP == domain 2 score: -2.7 bits; conditional E-value: 0.41 DUF4705 18 qasglsrpsaqLpvAsaGpk 37 +++++ r+ ++Lp+ s+Gp+ T324658_2 205 ASRCPRRAQLFLPAPSPGPT 224 57888889999999888886 PP == domain 3 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp as++pL +++l+ s ++ ++ ++L ++s+Gp T324658_2 221 PGPTAASQQPLW-TQRLPISwRPWSAHSFLKPSSPGP 256 9***********.999995548999**********99 PP == domain 4 score: 16.4 bits; conditional E-value: 4.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324658_2 254 PGPGQASRWPLQ-DQLLPSDGVSRPQ 278 9***********.9***********7 PP == domain 5 score: 9.2 bits; conditional E-value: 8e-05 DUF4705 1 PgpAPasrrpLqa...........................................paslqasglsrpsaqLpvAsaGp 36 P pA+as+rpLqa + +l+ gl rps++ AsaGp T324658_2 287 PLPAWASWRPLQAqvvlksaspgpasqqvsklfwlnscpapsrlcrprtfssqalrAHLLPLGGLYRPSSGCRTASAGP 365 56*********************66666666666666666666666666665555555555556666666555555555 PP == domain 6 score: 1.4 bits; conditional E-value: 0.021 DUF4705 2 gpAPasrrpLqa..............paslqasglsrpsa 27 gpA as+ pLqa pas q+ + p++ T324658_2 364 GPALASQGPLQAhlspprrppgakslPASRQPACGPLPPS 403 9**********88887777666666655544444444444 PP == domain 7 score: -6.4 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa......paslqasglsrpsaqLpvAsaGpklppagLs 44 A as+rpL ++ l p + + +++a+p+++++++s T324658_2 438 ALASHRPLPH*ersa*APCLTLA---PPTLIPCLTPAPPTPREVSMS 481 67888888778888884444433...555555555555555555543 PP == domain 8 score: -3.8 bits; conditional E-value: 0.91 DUF4705 6 asrrpLqa......paslq 18 as++pL ++sl T324658_2 564 ASHWPLPP*erkv*APSLT 582 8999996566666644444 PP == domain 9 score: -0.6 bits; conditional E-value: 0.089 DUF4705 13 apaslqasglsr.psaqLpvAsaGpklppa 41 apa+l+ +g s p ++ A +Gp p a T324658_2 659 APATLRDVGVSPlPHTGPSHAERGPHEPLA 688 399999999884488899999999987765 PP == domain 10 score: -3.6 bits; conditional E-value: 0.75 DUF4705 5 PasrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as++pL ++ l + p + + +++ +p+l+++ T324658_2 687 LASHWPLPP*qrlv*APCLTPA---PPMLTPCLTPDPPTLREVR 727 5999999778888888888887...7778888888888887775 PP == domain 11 score: -2.0 bits; conditional E-value: 0.24 DUF4705 4 APasrrpLqa....paslqasgl 22 A as+rpL l+++g+ T324658_2 773 ALASHRPLPRrevsVSPLPHTGP 795 889****9544554333555555 PP == domain 12 score: -4.1 bits; conditional E-value: 1 DUF4705 6 asrrpLqa 13 as++pL T324658_2 807 ASHWPLPP 814 89999953 PP == domain 13 score: -5.0 bits; conditional E-value: 1 DUF4705 27 aqLpvAsaGpklppag 42 + + +++a+p+ ++++ T324658_2 873 LTPCLTPAPPTQREVS 888 5555555555555554 PP == domain 14 score: -2.8 bits; conditional E-value: 0.44 DUF4705 13 apaslqasglsr.psaqLpvAsaGp 36 ap++l+ +g+s p ++ A +G T324658_2 912 APPTLRNVGMSPlPHTGPSHAERGR 936 3888888887743555666565555 PP == domain 15 score: -2.5 bits; conditional E-value: 0.36 DUF4705 6 asrrpLqa.............p 14 as++pL p T324658_2 941 ASHWPLPP*ersv*apcltlaP 962 8888886566666655555552 PP == domain 16 score: 9.0 bits; conditional E-value: 9e-05 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp s P s L T324658_2 1152 PQVGLSRPTCSLPASSPGPALPPSCVSTPDSGL 1184 899**************************9987 PP == domain 17 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T324658_2 1183 GLPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1217 5899*****************************87 PP == domain 18 score: 65.0 bits; conditional E-value: 2.8e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+rr+Lqap+ l+++g+srp+++Lp+AsaGp++p++gLsrPss+L T324658_2 1222 PGSAPALRRRLQAPNGLRSVGSSRPILRLPAASAGPNRPEVGLSRPSSSL 1271 9***********************************************98 PP == domain 19 score: 14.4 bits; conditional E-value: 1.8e-06 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324658_2 1294 VGLPGPSSVLSAASPGAKLPRVSLSRPSlSCL 1325 67888**********************96776 PP == domain 20 score: 3.0 bits; conditional E-value: 0.0065 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324658_2 1323 SCLPVASFGPAQlmALSGLPRP 1344 7*********865555566665 PP == domain 21 score: 2.6 bits; conditional E-value: 0.0089 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T324658_2 1348 LLVASSGPELdLQSAFAGPASCL 1370 789*******8677888999998 PP == domain 22 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklp 39 APa+r+ q +++l+asgl rps++L++A++Gp++p T324658_2 1400 KAPAFRWLWQ-SQLLPASGLFRPSSFLTMAFPGPVFP 1435 4666666444.************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 9979.25 // Query: T324658_3 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-16 59.6 173.8 1.8e-09 37.5 1.6 19.7 14 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 24.1 0.14 2.3e+03 10 49 .. 219 302 .. 191 302 .. 0.76 2 ! 37.5 1.6 1.1e-13 1.8e-09 19 50 .] 316 347 .. 316 347 .. 0.97 3 ! 16.1 15.0 5.4e-07 0.0088 1 50 [] 352 413 .. 352 413 .. 0.88 4 ? -2.5 0.6 0.36 5.9e+03 4 11 .. 481 488 .. 481 489 .. 0.91 5 ? -2.6 2.4 0.37 6.1e+03 20 20 .. 519 519 .. 497 572 .. 0.57 6 ? -3.8 3.5 0.88 1.4e+04 4 14 .. 653 676 .. 653 715 .. 0.63 7 ? -0.1 0.3 0.06 9.8e+02 6 23 .. 908 938 .. 905 959 .. 0.81 8 ? -6.7 11.4 1 1.6e+04 19 38 .. 1163 1182 .. 1139 1200 .. 0.69 9 ! 17.7 6.2 1.7e-07 0.0028 1 26 [. 1211 1235 .. 1211 1237 .. 0.96 10 ! 3.7 0.1 0.0041 67 2 15 .. 1245 1257 .. 1245 1264 .. 0.79 11 ! 13.2 0.7 4.4e-06 0.072 1 13 [. 1265 1277 .. 1265 1291 .. 0.92 12 ! 18.6 9.1 8.7e-08 0.0014 1 37 [. 1297 1345 .. 1297 1348 .. 0.97 13 ! 20.1 12.8 3.1e-08 0.00051 2 38 .. 1343 1423 .. 1343 1432 .. 0.95 14 ! 3.7 0.4 0.004 65 2 22 .. 1420 1439 .. 1420 1444 .. 0.85 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.14 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpkl............ppagLsrPssC 49 +Lqa ++ ++ glsr s+++p+As+Gpk pp+ L rP+s+ T324658_3 219 RLQArllppnnlfglsacpspgglgpptasssqapqAQVRPHGGLSRISSCPPMASPGPKWslvggllhsqlgPPGDLCRPKSS 302 55556666666666666666666666666666665577779*******************977888888888888888888775 PP == domain 2 score: 37.5 bits; conditional E-value: 1.1e-13 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l++a+L+ P++CL T324658_3 316 ASSFGSTPAQLPAAFVGPELSQAKLFGPTYCL 347 689****************************9 PP == domain 3 score: 16.1 bits; conditional E-value: 5.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq ++l+++glsrp++ + Gp++ p +gL+ P sCL T324658_3 352 TGPALAVEQPLQ-DPLLPPRGLSRPISHPHGGLLGPNPclppgspraghflPHGGLLMPNSCL 413 8***********.7889999999999988888888888888888888888899*********8 PP == domain 4 score: -2.5 bits; conditional E-value: 0.36 DUF4705 4 APasrrpL 11 A as++pL T324658_3 481 ALASQWPL 488 89*****9 PP == domain 5 score: -2.6 bits; conditional E-value: 0.37 DUF4705 20 s 20 T324658_3 519 A 519 1 PP == domain 6 score: -3.8 bits; conditional E-value: 0.88 DUF4705 4 APasrrpLqa.............p 14 A as++pL p T324658_3 653 ALASHWPLPR*etsa*apcltpaP 676 789999996566666655555441 PP == domain 7 score: -0.1 bits; conditional E-value: 0.06 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ +g s T324658_3 908 ASHWPLPR*emsa*apcltlaPPTLREVGVS 938 8999998888888888888888888888876 PP == domain 8 score: -6.7 bits; conditional E-value: 1 DUF4705 19 asglsrpsaqLpvAsaGpkl 38 ++ + r+ ++Lp+As+ p++ T324658_3 1163 SRHPLRAQLFLPAASPRPTP 1182 34456666666666666665 PP == domain 9 score: 17.7 bits; conditional E-value: 1.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +++l++ g srp+ T324658_3 1211 PGPGQASRWPLQ-AQLLPSDGVSRPP 1235 9***********.************9 PP == domain 10 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 2 gpAPasrrpLqapa 15 gp asrrpLqa + T324658_3 1245 GPSCASRRPLQA-Q 1257 8999*******4.4 PP == domain 11 score: 13.2 bits; conditional E-value: 4.4e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpL+a T324658_3 1265 PGPAPASRRPLHA 1277 9***********6 PP == domain 12 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpLq pas+++ + +ps+ L +A+ Gp T324658_3 1297 PGPAPSSRRPLQVqnflesaspgpasPASQWPL-SAQPSSWLSAAFLGPA 1345 9********************************.89*************7 PP == domain 13 score: 20.1 bits; conditional E-value: 3.1e-08 DUF4705 2 gpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpkl 38 gpA +++pLqa p +l+ g+++ps++LpvAs Gp T324658_3 1343 GPAFDFWWPLQAqnltssrplqarlpas*rpararprlhsglstps*lsphcslpsPKLLPFGGFGSPSSCLPVASLGPAH 1423 89999999999999999999999********************************************************87 PP == domain 14 score: 3.7 bits; conditional E-value: 0.004 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s++p q ++ ++ +l T324658_3 1420 GPAHSSQWPFQ-APFFPSGSL 1439 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 95 (0.00582608); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.48 # Mc/sec: 10602.95 // Query: T264513_1 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00072 19.5 1.4 32 4.6 0.1 5.9 6 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 0.047 7.6e+02 33 58 .. 2 27 .. 1 29 [. 0.76 2 ? 2.2 0.0 0.011 1.7e+02 20 74 .. 84 139 .. 80 144 .. 0.45 3 ? -1.3 0.0 0.14 2.2e+03 3 22 .. 167 186 .. 159 189 .. 0.59 4 ? 1.1 0.0 0.024 3.9e+02 23 46 .. 282 305 .. 237 310 .. 0.51 5 ! 2.6 0.1 0.0084 1.4e+02 13 39 .. 332 358 .. 322 380 .. 0.60 6 ! 4.6 0.1 0.002 32 8 57 .. 387 449 .. 387 452 .. 0.66 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.047 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlkrasF 58 +++ +F+++ +++ f+ + + +++F T264513_1 2 MHSLSFNSTRIQSIPFYSIPFCSTPF 27 56677888888888888888877777 PP == domain 2 score: 2.2 bits; conditional E-value: 0.011 Pentapeptide_4 20 earlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkd 74 ++rl++ + ++++++ F++ ++ + + + +++F+ + ++ f s+ + + T264513_1 84 SFRLHSIPLHSIPFHSIPFHSIRVDAIPIHTIPFHSIPFHSFRVDSIPFhSTPFQS 139 44444444455555555555555555555555555555555544444442223333 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 Pentapeptide_4 3 FtncsfnncklsnvnFsear 22 F++ f + l+ + F+++ T264513_1 167 FHSIPFRSVPLHSIAFYTIP 186 44445555555555555544 PP == domain 4 score: 1.1 bits; conditional E-value: 0.024 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdv 46 +++ F+ +++++ F+++ +++ T264513_1 282 FRSIPFVLIPFHSIPFHSTPFQSI 305 222222222223333333333322 PP == domain 5 score: 2.6 bits; conditional E-value: 0.0084 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFd 39 ++ + F+++ +++ F ++++++ F+ T264513_1 332 FHSIPFRSVPFHSIPFHSIPFHSIAFH 358 333334444444444444444333333 PP == domain 6 score: 4.6 bits; conditional E-value: 0.002 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl.............snvnFdkcllsdvdfaeadlkras 57 fn + ++ + F+++ l+ F ++++ ++ F++ ++++++f+ + +++ T264513_1 387 FNSVPFHSIPFYSFPLRVIPFHSIPMhsipvdtialhcfHSIPFHSIQFHSTRFDSFPFHSIP 449 677788888888888888888888887777555555555444566666666666665555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 60 (0.00367963); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 2848.91 // Query: T264513_2 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-09 37.8 1.4 1.7 8.7 0.0 6.3 7 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.6 0.0 0.0081 1.3e+02 12 56 .. 14 73 .. 10 78 .. 0.65 2 ! 5.0 0.0 0.0015 25 8 75 .. 50 123 .. 46 125 .. 0.89 3 ! 7.4 0.0 0.00027 4.4 3 53 .. 150 200 .. 149 206 .. 0.73 4 ! 8.7 0.0 0.0001 1.7 2 68 .. 194 260 .. 193 268 .. 0.87 5 ! 8.1 0.2 0.00016 2.6 13 75 .. 315 378 .. 290 380 .. 0.84 6 ! 6.0 0.0 0.0007 11 18 68 .. 340 390 .. 335 402 .. 0.47 7 ? 0.5 0.0 0.038 6.3e+02 16 43 .. 441 468 .. 424 476 .. 0.44 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.0081 Pentapeptide_4 12 klsnvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkra 56 +++ + F+++ l++ F +++ ++ F++ +++++++ + ++ T264513_2 14 QFHSIPFRSVPLHSIAFHTIPFhsg*fh*ipshsipfHSIAFHSIPFHSTRVDSLPFHSI 73 688888888888888888888888888888874444444445555555555444444444 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0015 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 f+ +++ + F + r + F ++++ ++v Fd ++ f + +++++F + ++++ f+ ++++ T264513_2 50 FHSIAFHSIPFHSTRVDSLPFHSIPFhlc*fHSVPFDCIPFHCIPFHSIPFRSIPFVLMPFQSIPFHSiPFRSI 123 78889999999999999999999999****99999**********************99999999987567776 PP == domain 3 score: 7.4 bits; conditional E-value: 0.00027 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadl 53 F++ f +++ + +++ +++ F +++l++ F+++ +++ +f ++ + T264513_2 150 FHSNAFPSIQFHSDSINSILFHSVLFHSIPLHSIPFHSTRVDSIEFHPIPF 200 566667777777777778888888888888888888888888888877665 PP == domain 4 score: 8.7 bits; conditional E-value: 0.0001 Pentapeptide_4 2 dFtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 +F+ f+ l+ + F + r + F ++++++ F+++ +++ f + + +++F+ + ++ f T264513_2 194 EFHPIPFHSILLHSIPFHSTRVDSLPFHSIPFHSIPFHSTWVDSIPFLSIAFHSIAFHSIPFHSIPF 260 5666678888899999*****************************************9887777666 PP == domain 5 score: 8.1 bits; conditional E-value: 0.00016 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 ++ F +++++ +++++++++v F++ +++ f + l ++F+ + ++ f+ ++++ T264513_2 315 FHSNAFHFFQFHSDSINSIPFHSVLFHSIPFHSIPFHSILLHFIPFHSTQVDSIPFHSiPFHSI 378 6777778888999999999999999999999999999999999999999988888876557666 PP == domain 6 score: 6.0 bits; conditional E-value: 0.0007 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 F ++ +++ F ++ l+ F+++++++ f + + +++F+ ++ f T264513_2 340 FHSIPFHSIPFHSILLHFIPFHSTQVDSIPFHSIPFHSIPFHSTRVDSIPF 390 444444444444444455555555555555555555555555544444433 PP == domain 7 score: 0.5 bits; conditional E-value: 0.038 Pentapeptide_4 16 vnFsearlkdcnFteanlsnvnFdkcll 43 ++F ++ +++++ ++++++ F++ + T264513_2 441 IHFHSIPFHSSRVDSIPFHALLFHSIPF 468 3333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 2848.91 // Query: T264513_3 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-06 26.1 0.1 28 4.8 0.0 5.7 5 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.8 0.0 0.0017 28 12 55 .. 7 50 .. 2 63 .. 0.66 2 ! 3.8 0.1 0.0036 59 3 41 .. 68 106 .. 66 106 .. 0.82 3 ? 1.4 0.0 0.02 3.3e+02 28 59 .. 148 179 .. 146 181 .. 0.87 4 ! 3.1 0.0 0.0056 91 42 75 .. 247 281 .. 216 303 .. 0.54 5 ! 4.7 0.0 0.0018 29 13 73 .. 333 394 .. 313 398 .. 0.75 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0017 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkr 55 +++ + +++ +++ F +++l++ F+++ +++ +f ++ + + T264513_3 7 QFHSDSINSILFHSVLFHSIPLHSIPFHSTRVDSIEFHPIPFHS 50 45555556666666667777777777777777777776665554 PP == domain 2 score: 3.8 bits; conditional E-value: 0.0036 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkc 41 F++ f+ ++ + + F ++ +++ F ++++++v F++c T264513_3 68 FHSIPFHSTCVDSIPFLSIAFHSIAFHSIPFHSVPFHSC 106 677778888888888888899999999999999999888 PP == domain 3 score: 1.4 bits; conditional E-value: 0.02 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFs 59 F ++++++ F+++ +++ f+ + + +++F+ T264513_3 148 FHSIPMHSLPFNSTRIQSIPFYSIPFCSTPFH 179 77888999999*********999999888885 PP == domain 4 score: 3.1 bits; conditional E-value: 0.0056 Pentapeptide_4 42 llsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 l++ f + +++++F + ++++ f+ ++++ T264513_3 247 PLHSIPFHSIPFRSIPFVLMPFQSIPFHSiPFHSI 281 44444444444444444444444444433233333 PP == domain 5 score: 4.7 bits; conditional E-value: 0.0018 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klk 73 ++ + F+++ +++ F ++++ +F++ ll+ f + + +++F+ l ++f+ ++ T264513_3 333 FHSIPFCSIPFHSIPFHSIPFYCISFHSILLRLIPFHSIPFHSIPFHSIPLGLIQFRSfPFH 394 77777888888888888888888888888888888888888888888877777777654555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 2972.78 // Query: T356797_1 [L=1068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-10 40.1 0.1 6.7e-10 39.4 0.1 1.2 1 EloA-BP1 ElonginA binding-protein 1 Domain annotation for each model (and alignments): >> EloA-BP1 ElonginA binding-protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.1 4.1e-14 6.7e-10 125 161 .. 317 353 .. 312 357 .. 0.91 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 4.1e-14 EloA-BP1 125 gaalYekLkeylLteeqLkenGyPrphpekpGkavll 161 g lY++Lk+ylLteeqL++n+yPrp p+kpG+++l T356797_1 317 GVILYRHLKNYLLTEEQLHKNNYPRPYPNKPGSILLN 353 678******************************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 435 (0.0266773); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 5267.87 // Query: T356797_2 [L=1068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 6235.44 // Query: T356797_3 [L=1067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 6229.60 // Query: T099922_1 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.55 # Mc/sec: 12728.09 // Query: T099922_2 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.57 # Mc/sec: 12069.74 // Query: T099922_3 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.62 # Mc/sec: 11291.05 // Query: T104949_1 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 6646.66 // Query: T104949_2 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 6996.49 // Query: T104949_3 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 6875.86 // Query: T089375_1 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.60 # Mc/sec: 11691.26 // Query: T089375_2 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.62 # Mc/sec: 11314.12 // Query: T089375_3 [L=2451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.61 # Mc/sec: 11494.91 // Query: T315888_1 [L=3804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 17004.06 // Query: T315888_2 [L=3804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.63 # Mc/sec: 17273.96 // Query: T315888_3 [L=3804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.77 # Mc/sec: 14133.24 // Query: T367343_1 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 4015.57 // Query: T367343_2 [L=771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3615.90 // Query: T367343_3 [L=771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 3802.93 // Query: T243226_1 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 5341.64 // Query: T243226_2 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 18.3 9.2 0.0019 17.5 5.7 2.9 3 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.076 1.2e+03 21 34 .. 492 505 .. 484 507 .. 0.50 2 ? -0.3 0.0 0.045 7.4e+02 2 14 .. 521 533 .. 520 535 .. 0.54 3 ! 17.5 5.7 1.2e-07 0.0019 3 35 .. 720 752 .. 719 753 .. 0.93 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.076 PT 21 qPTdqPtaqPtdaP 34 PT P+ P+ P T243226_2 492 HPTLYPSIHPSIHP 505 55555555555444 PP == domain 2 score: -0.3 bits; conditional E-value: 0.045 PT 2 ptaqPtaqPTvqP 14 pt +P+ +P+ P T243226_2 521 PTLYPSVHPSIHP 533 5555666665444 PP == domain 3 score: 17.5 bits; conditional E-value: 1.2e-07 PT 3 taqPtaqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 t q t+qP qP+ qP+ qP+ qP+ q + +P+ T243226_2 720 TQQLTSQPFMQPSTQPPIQPSIQPSIQLSIQPS 752 77889************************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.76 # Mc/sec: 4709.08 // Query: T243226_3 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-06 26.4 6.0 0.00021 20.6 0.4 2.9 3 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 0.1 0.00012 2 6 27 .. 482 503 .. 480 507 .. 0.75 2 ? -3.4 0.1 0.41 6.7e+03 6 11 .. 546 551 .. 545 551 .. 0.41 3 ! 20.6 0.4 1.3e-08 0.00021 3 28 .. 737 762 .. 734 766 .. 0.70 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00012 PT 6 PtaqPTvqPTgqPtaqPTdqPt 27 P+ +PT +P+ qP+ P+ P+ T243226_3 482 PSIHPTISPSIQPSIHPSIHPS 503 7778888888888888887777 PP == domain 2 score: -3.4 bits; conditional E-value: 0.41 PT 6 PtaqPT 11 P+ qPT T243226_3 546 PSIQPT 551 444444 PP == domain 3 score: 20.6 bits; conditional E-value: 1.3e-08 PT 3 taqPtaqPTvqPTgqPtaqPTdqPta 28 ++ P+++P++ P++ P++ P++ P+ T243226_3 737 SNHPSNHPSNCPSNHPSNHPSNNPSV 762 56677777777777777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 5186.81 // Query: T051402_1 [L=5938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.44s 00:00:02.29 Elapsed: 00:00:00.83 # Mc/sec: 20467.00 // Query: T051402_2 [L=5938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.45s 00:00:02.32 Elapsed: 00:00:00.80 # Mc/sec: 21234.51 // Query: T051402_3 [L=5938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.41s 00:00:02.19 Elapsed: 00:00:00.78 # Mc/sec: 21778.99 // Query: T214543_1 [L=2053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.76 # Mc/sec: 7728.01 // Query: T214543_2 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 8153.37 // Query: T214543_3 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 8041.68 // Query: T351451_1 [L=358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.08 12.9 0.0 0.11 12.4 0.0 1.2 1 Fumarate_red_C Fumarate reductase subunit C 0.13 10.9 15.6 0.16 10.6 15.6 1.0 1 NPR3 Nitrogen Permease regulator of amino acid tra 0.22 10.8 18.1 0.32 10.3 18.1 1.1 1 DUF1510 Protein of unknown function (DUF1510) 1.1 8.0 5.2 1.4 7.7 5.2 1.1 1 DUF913 Domain of Unknown Function (DUF913) 1.6 7.4 26.6 2.2 7.0 26.6 1.1 1 NARP1 NMDA receptor-regulated protein 1 4.1 6.6 14.7 5.7 6.2 14.7 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 6.7 5.2 14.6 9 4.8 14.6 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Fumarate_red_C Fumarate reductase subunit C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 4.9e-05 0.11 48 86 .. 124 162 .. 122 163 .. 0.93 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 4.9e-05 Fumarate_red_C 48 LaqgeaaweafleflqnPlvlllniiaLaaallhavTwf 86 L q ++++ + +++++P ++++n ++L l h++T++ T351451_1 124 LGQRMRNYSPWAKCHSDPSIVFVNKVLLEYSLIHSFTYY 162 677788999*****************************8 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 15.6 7.1e-05 0.16 55 141 .. 206 288 .. 191 310 .. 0.42 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 7.1e-05 NPR3 55 krkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededdeesekeeeekekedkkksltmFhlvfvln 141 +++r + ++ ke +++++++++++++++k+ +ke +++++k+++++ ++++++++e ++++++e++k++++ + +++ +l T351451_1 206 RKER---EGKEGRKEGEERKKGRKERKKERKKERKKERKKERRKKERKK-ERKKERKKERKKERKKERKKDKDNGQPLIYNVFAILS 288 2222...222222222223333333333333322222222222222222.2222222222233344555555555555666666655 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 18.1 0.00014 0.32 29 106 .. 187 271 .. 178 280 .. 0.37 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00014 DUF1510 29 ivaaslfigsksde......eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedksee.eeeedkeedeekekeeda 106 i ++s+fi+++ ++ +e++ ++ +e ee++k +k+ ++e+++e +ke ++++++++ ++e ++e++ke ++e++ke+++ T351451_1 187 IFTISVFIKKEGKKe*kkgrKEREGKEGRKEGEERKKGRKERKKERKKERKKERKKERRKKERKKErKKERKKERKKERKKERKK 271 5677888888777778666533333333333333333322222222222222222222221111110111111111111111111 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 5.2 0.00059 1.4 267 333 .. 222 288 .. 175 290 .. 0.53 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00059 DUF913 267 sskseasssssssetkeeekssededvemedaeaetesesdeeeeseeekeknslldyilnvakFLe 333 ++ +++++++ ++e+k+e k++ +++ +++ ++e+++e ++e ++e++k+k + + i+nv+ L+ T351451_1 222 KKGRKERKKERKKERKKERKKERRKKERKKERKKERKKERKKERKKERKKDKDNGQPLIYNVFAILS 288 1222222222222222222222222222333344555555555566666677778888888887775 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 26.6 0.00093 2.2 397 458 .. 215 274 .. 181 284 .. 0.52 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00093 -HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S CS NARP1 397 keeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakkedeeakkeded 458 ++e+++ + +erkk rkk +k+e+k+e+ ++e++k++k k+++k++kke ++++k+d+d T351451_1 215 RKEGEERKKGRKERKKERKKERKKERKKERRKKERKKERK--KERKKERKKERKKERKKDKD 274 2233333444445555555544444444444433333222..23444455555555555554 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 14.7 0.0024 5.7 19 82 .. 218 281 .. 185 284 .. 0.56 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0024 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeeekldkskpevlIY 82 ee+++ ++e +++ k+e+++e+k+e ++e kke+k+e k+++++++++e k+dk++ + lIY T351451_1 218 GEERKKGRKERKKERKKERKKERKKERRKKERKKERKKERKKERKKERKKERKKDKDNGQPLIY 281 3444444444444444444444444444444444444444444443444444666666666776 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 14.6 0.0039 9 250 306 .. 213 269 .. 183 284 .. 0.34 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0039 Presenilin 250 aseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessessee 306 + ++++ee+++ ++++k+++++e+++e+++e++++e+++e+++e+k+e+++++++e+ T351451_1 213 EGRKEGEERKKGRKERKKERKKERKKERKKERRKKERKKERKKERKKERKKERKKER 269 111111111111111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2077 (0.127376); expected 326.1 (0.02) Passed bias filter: 691 (0.042377); expected 326.1 (0.02) Passed Vit filter: 323 (0.0198087); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.09u 0.47s 00:00:01.56 Elapsed: 00:00:00.78 # Mc/sec: 1313.05 // Query: T351451_2 [L=357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0057 16.3 5.8 0.0078 15.8 5.8 1.2 1 AAA_11 AAA domain ------ inclusion threshold ------ 0.1 12.6 3.5 0.13 12.3 3.5 1.2 1 DDHD DDHD domain 0.17 10.5 12.1 0.25 9.9 12.1 1.2 1 Presenilin Presenilin 0.39 10.9 21.2 0.58 10.3 21.2 1.2 1 Vfa1 AAA-ATPase Vps4-associated protein 1 1.2 7.9 4.0 1.6 7.5 4.0 1.1 1 DUF913 Domain of Unknown Function (DUF913) 4.8 6.2 7.9 6.9 5.7 7.9 1.1 1 Zip ZIP Zinc transporter 10 5.4 24.8 14 4.9 24.8 1.1 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 5.8 3.4e-06 0.0078 115 190 .. 199 273 .. 188 354 .. 0.51 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 3.4e-06 AAA_11 115 krlekek.ekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesle 190 ++ e ++ +k + ++ ++ +k++ke +++ ++e ++k++k+++k+++++++++++ kkerk+ +k+ +++e++++ T351451_2 199 RKNERKEgRKG-KGRKEGRKGKKERKEGKKERKKE-RKKERKKERKKEERKRERKKERKKERKKERKKERKKEKKIK 273 22222221111.11222222222222222222221.12333333333333333334444444444444444444443 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 3.5 5.5e-05 0.13 128 185 .. 214 263 .. 152 318 .. 0.53 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.5e-05 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.e 185 e+++ k+++++ ++er++e++ke+++++++e++++++++++++++ ++ e + T351451_2 214 EGRKGKKERKEGKKERKKERKKERKKERKKEERKRERKKERKKER-----KK----ErK 263 111111111111222222222222221111111111111111111.....11....111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 12.1 0.00011 0.25 243 314 .. 197 268 .. 189 297 .. 0.36 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00011 Presenilin 243 aekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeee 314 +e+k+e+++ ++++ ++e ++ +k++++ ++e+++e+++++++++++e++++++++e+++++++e+++e+++ T351451_2 197 KERKNERKEGRKGKGRKEGRKGKKERKEGKKERKKERKKERKKERKKEERKRERKKERKKERKKERKKERKK 268 122222222222222222222222222222222222111111111111111111111111111111111111 PP >> Vfa1 AAA-ATPase Vps4-associated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 21.2 0.00025 0.58 60 139 .. 201 271 .. 190 316 .. 0.43 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00025 Vfa1 60 eaakkkke..leeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekkkelkkaeeeleekeepr 139 +++k+ ++ +e +k kke +e +k++k+++kk+++k++k+++ k e+ ++e kke kk+ +++ +k+e++ T351451_2 201 NERKEGRKgkGRKEGRKGKKERKEGKKERKKERKKERKKERKKEERKRER----------KKERKKERKKERKKE-RKKEKK 271 11111111112222222222222222222211111111111111111111..........111111111111111.112222 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 4.0 0.00068 1.6 269 317 .. 219 268 .. 186 298 .. 0.40 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00068 DUF913 269 kseasssssssetkeeek.ssededvemedaeaetesesdeeeeseeeke 317 k+e ++++++++++ +++ ++e +++e ++++++++++++++e ++e+k+ T351451_2 219 KKERKEGKKERKKERKKErKKERKKEERKRERKKERKKERKKERKKERKK 268 11111111111111111111111112222221111111111111111122 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 7.9 0.003 6.9 110 186 .. 202 276 .. 186 287 .. 0.39 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.003 Zip 110 tpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvra 186 + k+ ++ + +++ k ++ k ++e+k++ ++e +++++++e +r++k+e ++++k++ +++++k +++k++a T351451_2 202 ERKEGRKGKGRKEGRKGKKERKEGKKERKKERKKERKKERKKEERKRERKKERKKERKKE--RKKERKKEKKIKTMA 276 222222222222222222222222222222223333333333444444433333333333..334555555555554 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 24.8 0.0061 14 36 116 .. 190 270 .. 186 277 .. 0.63 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0061 DUF1510 36 igsksdeeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevtees 116 + s s+++e++++++e + + k+ k ++e++e +++++++ ++e++k+ ++ee+++e ++e++ke+++e ++e ++e+ T351451_2 190 FLSLSKKKERKNERKEGRKGKGRKEGRKGKKERKEGKKERKKERKKERKKERKKEERKRERKKERKKERKKERKKERKKEK 270 445556677778888888888888888888888888887777777777777777777777666666644444433333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2262 (0.138722); expected 326.1 (0.02) Passed bias filter: 746 (0.04575); expected 326.1 (0.02) Passed Vit filter: 348 (0.0213418); expected 16.3 (0.001) Passed Fwd filter: 66 (0.00404759); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.27u 0.46s 00:00:01.73 Elapsed: 00:00:00.82 # Mc/sec: 1245.51 // Query: T351451_3 [L=357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.8 11.6 0.018 14.4 11.6 1.2 1 DUF1510 Protein of unknown function (DUF1510) 0.37 10.8 5.3 0.48 10.4 5.3 1.1 1 DDHD DDHD domain 3.3 7.1 9.2 4.1 6.8 9.2 1.1 1 DUF2201_N Putative metallopeptidase domain 4.9 7.5 13.3 9.7 6.5 13.3 1.5 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle traf 6.5 5.2 18.0 9.4 4.7 18.0 1.1 1 Presenilin Presenilin 9.8 5.2 6.5 14 4.6 6.5 1.2 1 Zip ZIP Zinc transporter Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 11.6 6.6e-06 0.018 43 110 .. 198 265 .. 150 271 .. 0.43 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 6.6e-06 DUF1510 43 eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeena 110 +e+ ++++e + +e k+ ++e++e++++++++ ++e++k+ +++e++ke ++e++ke+++e ++ T351451_3 198 KERMKERKEGKGREGRKEGRGRKKERKERKKERKKERKKERKKERKKKEREKERKKERKKERKKERKK 265 44444444444444444433333333333333333222222222222222222222222211111111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.3 0.00018 0.48 134 186 .. 217 261 .. 155 309 .. 0.44 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00018 DDHD 134 laesqksherssesskesqeskaaesssasssaksssaeekveledkelee.ea 186 ++++ +er++e++ke+++ +++++++++e+++e ++++ +e ++ T351451_3 217 RGRKKERKERKKERKKERKK---------ERKKERKKKEREKERKKERKKErKK 261 11111111111111111111.........1111111111111111111111111 PP >> DUF2201_N Putative metallopeptidase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 9.2 0.0015 4.1 127 193 .. 198 264 .. 154 271 .. 0.75 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0015 DUF2201_N 127 aerlytalggadrdgekkgdgekaakkkrsdspesarvgalatgfeadleesekgksseeeeseear 193 er+ ++ +g +r+g k+g+g+k++ k+r+++ ++ r++++ ++ ++ e+e++k+++ e ++e + T351451_3 198 KERMKERKEGKGREGRKEGRGRKKERKERKKERKKERKKERKKERKKKEREKERKKERKKERKKERK 264 45555555888999*****************999999999988888777776666665554443332 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 13.3 0.0036 9.7 43 111 .. 182 259 .. 176 271 .. 0.50 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0036 Afi1 43 krkqDitvFfLykdtsteeeeleeeek............knklekrkkkksededdvdeedeeeeddnedlde.lskdeeek 111 + +++i F Ly+++ +e ++ +e k k +rk++k+e++++ ++e ++e +++e ++e +++ ++e+ T351451_3 182 SKDENIYYFCLYQKRRKERMKERKEGKgregrkegrgrkK----ERKERKKERKKERKKERKKERKKKEREKErKKERKKER 259 45668899*****999999888777779988888865541....22222222222222222222222222222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 18.0 0.0035 9.4 204 290 .. 181 267 .. 177 271 .. 0.41 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0035 Presenilin 204 qerneeifpaLiYsaevvvlaaeeeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaee 290 ++++e+i+ + +Y+ + + ++e+++ k +++ +e + ++++++e+++e++ke+++e+++++k++++++++++e+++++++e+++e+ T351451_3 181 SSKDENIYYFCLYQKRRKERMKERKEGKGREGRKEGRGRKKERKERKKERKKERKKERKKERKKKEREKERKKERKKERKKERKKER 267 567888888888888888876666553333333333333333333333333333333323333222222222222222222222222 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 6.5 0.0053 14 120 167 .. 214 261 .. 156 275 .. 0.38 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0053 Zip 120 esaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesek 167 +++++++ + ++ +++++ke++++ ++++++++ e+ ++k+ k+e +k T351451_3 214 KEGRGRKKERKERKKERKKERKKERKKERKKKEREKERKKERKKERKK 261 111111111111122222222222222222211111112222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2139 (0.131179); expected 326.1 (0.02) Passed bias filter: 751 (0.0460567); expected 326.1 (0.02) Passed Vit filter: 353 (0.0216485); expected 16.3 (0.001) Passed Fwd filter: 59 (0.0036183); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.21u 0.42s 00:00:01.63 Elapsed: 00:00:00.79 # Mc/sec: 1292.81 // Query: T004146_1 [L=1237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.76 # Mc/sec: 4656.38 // Query: T004146_2 [L=1237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 873 (0.0535386); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 5801.39 // Query: T004146_3 [L=1236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1305 (0.0800319); expected 326.1 (0.02) Passed bias filter: 395 (0.0242242); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.44s 00:00:01.72 Elapsed: 00:00:00.72 # Mc/sec: 4911.09 // Query: T316398_1 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1469 (0.0900895); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.52s 00:00:02.73 Elapsed: 00:00:00.88 # Mc/sec: 7743.75 // Query: T316398_2 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 974 (0.0597326); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.45s 00:00:02.33 Elapsed: 00:00:00.82 # Mc/sec: 8310.36 // Query: T316398_3 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 672 (0.0412118); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.37s 00:00:01.66 Elapsed: 00:00:00.75 # Mc/sec: 9082.18 // Query: T138461_1 [L=2905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-05 21.9 0.8 0.34 10.5 0.1 4.9 5 Pentapeptide Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.1 2.1e-05 0.34 2 25 .. 906 929 .. 906 934 .. 0.86 2 ? 1.3 0.0 0.015 2.5e+02 28 39 .. 990 1001 .. 981 1011 .. 0.59 3 ? 1.6 0.0 0.013 2.1e+02 3 24 .. 1039 1060 .. 1039 1061 .. 0.77 4 ? 1.8 0.0 0.011 1.8e+02 3 24 .. 1127 1148 .. 1125 1149 .. 0.79 5 ? -2.5 0.0 0.23 3.8e+03 19 28 .. 1211 1220 .. 1200 1221 .. 0.41 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 2.1e-05 B-TT-B-CCCCCCCCCCESEEECT CS Pentapeptide 2 nLsgAnLsganLsganlsgAnLtg 25 +Ls+++Ls +Ls+ +ls+ +L++ T138461_1 906 DLSRVDLSRVDLSREDLSRVDLSR 929 799999999999999999999986 PP == domain 2 score: 1.3 bits; conditional E-value: 0.015 -TT-EECCEEEC CS Pentapeptide 28 lsgAdLsganLs 39 ls+ dLs+++Ls T138461_1 990 LSRVDLSRVDLS 1001 444444444443 PP == domain 3 score: 1.6 bits; conditional E-value: 0.013 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138461_1 1039 LSRVDLSYMHQSRVDLSRVNLS 1060 6788888888888888888886 PP == domain 4 score: 1.8 bits; conditional E-value: 0.011 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138461_1 1127 LSRVDLSYMHQSRVDLSRVNLS 1148 7888888888888888888886 PP == domain 5 score: -2.5 bits; conditional E-value: 0.23 ESEEECT-B- CS Pentapeptide 19 sgAnLtgAnl 28 s+ +L+++nl T138461_1 1211 SRVDLSRVNL 1220 3333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 10793.13 // Query: T138461_2 [L=2905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.39s 00:00:01.67 Elapsed: 00:00:00.79 # Mc/sec: 10519.89 // Query: T138461_3 [L=2905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.60 # Mc/sec: 13851.19 // Query: T346745_1 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.73 # Mc/sec: 8033.84 // Query: T346745_2 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-64 216.3 8.9 1.9e-57 194.6 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.6 5.4 1.2e-61 1.9e-57 179 299 .. 1027 1147 .. 1018 1155 .. 0.94 2 ! 23.0 0.1 1.7e-09 2.8e-05 340 367 .. 1190 1219 .. 1188 1220 .. 0.96 Alignments for each domain: == domain 1 score: 194.6 bits; conditional E-value: 1.2e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346745_2 1027 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1119 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346745_2 1120 GKVNHKWKPIRLTADLSAETLQARREWG 1147 ***************************8 PP == domain 2 score: 23.0 bits; conditional E-value: 1.7e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346745_2 1190 FVTTRPALQELLKEapNMERKNRYQPLQKH 1219 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.71 # Mc/sec: 8260.14 // Query: T346745_3 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-35 121.3 1.9 6.5e-35 120.5 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 4.8e-14 51.9 14.6 2.6e-07 29.7 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.025 14.4 0.1 0.058 13.2 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.5 1.9 1.2e-38 6.5e-35 31 210 .. 1631 1823 .. 1622 1841 .. 0.93 Alignments for each domain: == domain 1 score: 120.5 bits; conditional E-value: 1.2e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346745_3 1631 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1728 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346745_3 1729 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 1823 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 2.9 4.7e-11 2.6e-07 6 83 .. 882 967 .. 877 979 .. 0.79 2 ! 27.6 3.9 2e-10 1.1e-06 145 182 .. 993 1030 .. 993 1034 .. 0.96 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 4.7e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346745_3 882 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 967 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.6 bits; conditional E-value: 2e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346745_3 993 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1030 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 1.1e-05 0.058 24 48 .. 950 974 .. 948 977 .. 0.91 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.1e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346745_3 950 KLYQRLQELLSRIASLEKNVNDLME 974 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1121 (0.0687477); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.20u 0.41s 00:00:01.61 Elapsed: 00:00:00.77 # Mc/sec: 7616.50 // Query: T139692_1 [L=305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 1677.99 // Query: T139692_2 [L=305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 1478.90 // Query: T139692_3 [L=304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.57 # Mc/sec: 1499.47 // Query: T222361_1 [L=2041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 504 (0.0309089); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.42s 00:00:01.53 Elapsed: 00:00:00.77 # Mc/sec: 7583.06 // Query: T222361_2 [L=2040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 7679.07 // Query: T222361_3 [L=2040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 8582.49 // Query: T070833_1 [L=2914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 10687.77 // Query: T070833_2 [L=2914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.73 # Mc/sec: 11419.81 // Query: T070833_3 [L=2913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 10822.85 // Query: T184583_1 [L=6175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.35s 00:00:02.27 Elapsed: 00:00:00.95 # Mc/sec: 18595.40 // Query: T184583_2 [L=6175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-33 113.5 3.7 1.7e-32 112.6 3.7 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 2.7e-17 62.6 0.3 4.6e-17 61.8 0.3 1.2 1 Transposase_22 L1 transposable element 0.0026 17.5 0.1 0.0045 16.7 0.1 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.6 3.7 3.1e-36 1.7e-32 1 209 [. 3010 3242 .. 3010 3268 .. 0.93 Alignments for each domain: == domain 1 score: 112.6 bits; conditional E-value: 3.1e-36 EE-TT......S-EEE......-THHHHCTB--..........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvl.ekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleel 88 ipK+g ++yRpisl+++d k+ nk++a+++++++ ++ ++++q+gf g + + ++ ++++++++ k+k+++++++D + a+d++++ + T184583_2 3010 IPKPGkditkRENYRPISLMNTDAKIPNKILANQIQQHIkRMMIHHDQVGFTLGMQGWFNIcrpiNVIHHINRIKNKNHMIISIDGETAYDKIQHLFM 3107 899999999999***************************99***********************99999999999999******************** PP GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS. CS RVT_1 89 lrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks. 176 +++l+++ ++ + +++ik+ + ++++++ +nge+ + ++ +g+ G++l llfn++++ l r +r++ ++v+l++ Di+i+ ++ T184583_2 3108 IKTLNKLDIEGTYLKIIKAAYDKTTANIILNGEKLKAFPLRTGTTKGCPLLSLLFNIVLEVLARAIRQEKeikgiqigkEEVKLSLLTNDIIIHLENl 3205 *********************************99*********************************99***************************6 PP HHHHHHHHHHHHHHHHHTT--BEGGG-EEE....... CS RVT_1 177 keelqelleaveewlkesglkinpeKtklvlf....s 209 k++ ++ll+ + + k sg+kin+ K ++l+ + T184583_2 3206 KDSSKRLLNLITKISKASGYKINAYKLVALLYtnndQ 3242 666***********************99998754440 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.8 0.3 8.5e-21 4.6e-17 261 320 .. 2358 2417 .. 2346 2428 .. 0.93 Alignments for each domain: == domain 1 score: 61.8 bits; conditional E-value: 8.5e-21 HHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT--.-EEETTTEE CS Transposase_22 261 kdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfq.PrllyPakl 320 ++ilkavr+k +vt kG irltad+++etl+arr w +++ +lk+ + Pr+lyPakl T184583_2 2358 LERILKAVRQKHQVTHKGILIRLTADFAPETLQARRVWDPIFSLLKQ-NTC*PRILYPAKL 2417 59*****************************************9985.78899*******9 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.1 8.4e-07 0.0045 3 118 .. 2602 2726 .. 2600 2727 .. 0.71 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 8.4e-07 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtdskergeeLidfleehs.lsll......nllkegptfeseng 87 i + Y p+ +l+ +++ l +l++e++s ++ii+GDfN ++ + + ++ + ++e++df +++ ++l+ + + tf s+ + T184583_2 2602 ILNSYPPNAG-ALRFIKHLLLDLRNETDS-NTIIVGDFNTLLIALKRSLRQ--KVNKEIMDFNYTLEqMHLAdiyrtfYPRTAEYTFFSSAH 2689 5566665555.9999999999******98.7**************997777..888888887655431333344555433333455555555 PP Exo_endo_phos_2 88 ..ssiiDltltsdnlaks....leleeedlgSDHrpi 118 s iD ++t ++ + + ++ ++ SDH i T184583_2 2690 giFSKIDYMITPQTSPNTfkniEIISSINIFSDHGGI 2726 5669******954444444469999999******876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.99u 0.43s 00:00:02.42 Elapsed: 00:00:00.79 # Mc/sec: 22361.55 // Query: T184583_3 [L=6174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:00.87 # Mc/sec: 20302.03 // Query: T358371_1 [L=432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-08 31.2 1.7 1.1e-07 30.8 1.7 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.8 1.7 6.6e-12 1.1e-07 104 139 .. 71 107 .. 68 115 .. 0.91 Alignments for each domain: == domain 1 score: 30.8 bits; conditional E-value: 6.6e-12 RBP_receptor 104 kllallyvpllyypllaClstefr.vgavlGlllSlv 139 +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358371_1 71 LLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 107 79********************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 2094.71 // Query: T358371_2 [L=432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 1961.71 // Query: T358371_3 [L=432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.65 # Mc/sec: 1901.35 // Query: T222987_1 [L=481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-16 59.4 0.0 4.4e-16 58.8 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 4.7e-12 46.1 0.0 7e-12 45.6 0.0 1.2 1 GATase_6 Glutamine amidotransferase domain ------ inclusion threshold ------ 0.13 11.5 0.0 0.19 11.0 0.0 1.1 1 DUF3700 Aluminium induced protein Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.8 0.0 8.1e-20 4.4e-16 24 122 .. 263 357 .. 257 357 .. 0.94 Alignments for each domain: == domain 1 score: 58.8 bits; conditional E-value: 8.1e-20 GATase_7 24 lvivfnGeiyNykelreeLeakghrfrtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkal 122 +++++nGeiyN+k++++++e ++ +tk D e++l+l+++ ++e+++ l G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se k l T222987_1 263 MWLCYNGEIYNHKKVQHQFE---FEYQTKVDGEIILHLYDK-GGIEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVRSEAKEL 357 799***************97...5689*************9.8******************************.************97799999*99875 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 0.0 1.3e-15 7e-12 42 130 .. 263 348 .. 257 353 .. 0.86 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 1.3e-15 GATase_6 42 lllvhNGeiynykelreelpalkglafrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgla 130 ++l +NGeiyn+k+++ +++ + ++++D e++l+l+++ G e+++ +l+G+faf++ d++++++ l rd + gv+pl+ av+e+g++ T222987_1 263 MWLCYNGEIYNHKKVQHQFEF----EYQTKVDGEIILHLYDKGGiEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFL 348 799**********99999998....33468**********9999**************************955.67788888888766665 PP >> DUF3700 Aluminium induced protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 3.5e-05 0.19 81 171 .. 267 352 .. 261 357 .. 0.70 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 3.5e-05 DUF3700 81 fqGslenlasLkkqyGLskta.nevllvieayrtLrDrgPypadqvvkdleGkfafvlyDskaktvfvaldad..gsvplyWGiaadgsvvisd 171 ++G++ n ++++q+ ++ ++ + +++ L D+g +q + l G fafvl Ds +k+v +ld+d g pl+ ++ dg +++ T222987_1 267 YNGEIYNHKKVQHQFEFEYQTkVDGEIILH----LYDKGG--IEQTICTLVGVFAFVLLDSANKKV--SLDRDt*GVRPLFKAVTEDGFLAVRS 352 566666666777776664333034444444....447775..589999***************997..67888677889999999999887754 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 2053.82 // Query: T222987_2 [L=481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 2023.62 // Query: T222987_3 [L=480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 2112.61 // Query: T091446_1 [L=4250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-14 54.4 0.0 1.6e-14 53.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.8 0.0 9.9e-19 1.6e-14 85 206 .. 1592 1713 .. 1578 1718 .. 0.89 Alignments for each domain: == domain 1 score: 53.8 bits; conditional E-value: 9.9e-19 Gag_p30 85 eafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaafle.rlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 +a+p p+wd ++ + s k +l glr ++p n + + +++qgkee+p+afle ea r+ytp pe+ e + + fi+qsa+dir T091446_1 1592 QAIPSMDPHWDLDSDHEDWSCKHLLTCVLEGLRRIIKKPMNYSMMSTITQGKEENPSAFLE*L-WEALRKYTPLSPESLEGQLILKDKFITQSATDIR 1688 6899999********9999999999**********************************9665.69******************************** PP Gag_p30 182 kklqrleglqeatlkdlvkeaekvy 206 +k+q+ e++l+ l++ v T091446_1 1689 RKFQKQALGPEKNLEALLNLVTLVL 1713 ****987777778877776665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.62u 0.42s 00:00:02.04 Elapsed: 00:00:00.80 # Mc/sec: 15198.16 // Query: T091446_2 [L=4250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-12 46.8 0.0 5.4e-12 46.0 0.0 1.3 1 RNase_H RNase H 2.8e-08 33.8 0.0 5.3e-08 32.9 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.011 15.1 0.0 0.018 14.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.17 11.2 0.6 0.3 10.4 0.0 1.6 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.0 0.0 1.3e-15 5.4e-12 3 92 .. 2429 2517 .. 2427 2521 .. 0.88 Alignments for each domain: == domain 1 score: 46.0 bits; conditional E-value: 1.3e-15 SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSE CS RNase_H 3 avvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawktt 92 ++++Yt Gs++ ++g ++ag+++ ++++ s+pl++ ++++ aEL A++ aL +++++n+ytDSkY++ ++ + wk+++ +t+ T091446_2 2429 DLNLYTNGSSFVKNGIRRAGYTIVSDVTVLESKPLPPGTSAQLAELVALTRALVlG--KGKRINVYTDSKYAYVILHAHAAIWKEREFPTS 2517 5789*****************7777867788999*******************955..99**************88888888888777664 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 0.0 1.3e-11 5.3e-08 4 100 .. 1835 1926 .. 1833 1927 .. 0.94 Alignments for each domain: == domain 1 score: 32.9 bits; conditional E-value: 1.3e-11 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P + + i+g+ i +llDtG +v+ + + +++++++Gi+g+ + + + ++ + f++ +l++pe+p +llGrd+L k g+ + T091446_2 1835 EPQVCLTIEGQEIDFLLDTGVAFSVLISCSGRLS----SRSVTIRGILGQPvTRDFFHLLSCNWETLLFSH--AFLVMPESPTPLLGRDILAKAGAII 1926 699999*********************9999999....************9899999**************..*******************998765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 4.4e-06 0.018 1 143 [. 2018 2112 .. 2018 2114 .. 0.84 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.4e-06 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 ++K++ g++R++ d++++n++++ L + p+ + s + +a +++ lDlk+a + pl+ +++ l+af p T091446_2 2018 VQKPN-GQWRLV----QDLRLINEAVIP-LYP--------VVPNPYTLLS------------QIPEEAGWFTVLDLKDAAFCLPLHSDSQFLFAFEDP 2089 57999.*****7....7***********.444........4444444411............1356789***************************** PP .........................TEEEEESB--ST-TTHHHHH CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllf 143 t + + ++ lpqG+ SP lf T091446_2 2090 TD----------------------HTSQLTWMILPQGFRDSPHLF 2112 65......................4899***************99 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.1 0.84 3.4e+03 90 105 .. 899 914 .. 895 916 .. 0.86 2 ? 10.4 0.0 7.4e-05 0.3 3 54 .. 1501 1552 .. 1499 1559 .. 0.90 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.84 Gag_p30 90 trpdwdyetaegresl 105 rp wdy ++ re++ T091446_2 899 WRPRWDYRLSPSRETI 914 59**********9975 PP == domain 2 score: 10.4 bits; conditional E-value: 7.4e-05 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtllt 54 pfs sdl + k++ fs+dp + +++ + t + +w d ll+ l+ T091446_2 1501 VPFSLSDLKQIKADLAKFSDDPDRYLDVLQGLGQTFDLAWRDVMLLLDQTLA 1552 69*****************************************999977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 598 (0.0366736); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.98u 0.37s 00:00:02.35 Elapsed: 00:00:00.80 # Mc/sec: 15198.16 // Query: T091446_3 [L=4249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-39 135.5 3.4 3.6e-39 134.8 3.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 2.5 7.4 14.7 4 6.7 14.7 1.2 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.8 3.4 4.4e-43 3.6e-39 335 524 .. 2640 2825 .. 2626 2841 .. 0.87 Alignments for each domain: == domain 1 score: 134.8 bits; conditional E-value: 4.4e-43 XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHH CS TLV_coat 335 vapngtvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqfkkLq 430 ++++g +f+c+ +t + l++++++ C l+ l P+i++++g+ + +++ + R a++l++lL+GLgi +++gtG++ l s+ ++ L+ T091446_3 2640 LPSQGIFFLCG-MWT---YICLPTNWIGTCTLVFLSPNINIAPGNqSLSVPLKTQVCQCR---AIQLIPLLTGLGIVTATGTGIASLsTSLSYYQTLS 2730 57888999998.589...99*************************655556666666777...************************99********* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHH.HHHHHHHHHHHHH.HHHHHH-XXXX.XXXXXX CS TLV_coat 431 aalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgiv.rdsiakLqerleq.rqrllednqlwfegllgl 524 + +q++++sI l+ +++sl v lQN RGLDlL++e+GGlC+ L E CCFy ++s iv + Lqe+ ++ rqrl+++ + +++ l T091446_3 2731 KDFSDSLQEITKSILTLQSQIDSLTAVTLQNHRGLDLLTAEKGGLCTFLGEDCCFYTNQSWIV*D-ATRCLQEKASEiRQRLSNSYTNLWSWATWL 2825 ************************************************************99774.347899987543888888888887776544 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 14.7 0.0005 4 42 124 .. 2540 2627 .. 2527 2631 .. 0.70 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0005 DUF1510 42 e.....eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenveka 124 +++++ +e+ e+++++ e +e ++++ +e eee +++ e++++ ++++ ++ +ee ++ +++e ++ev++ + +++ +++ T091446_3 2540 VavlhcQSHQKGKEKGEQQHKHMAEAEEMKDRKRQEVREEEIERQREKEKDRKSKRRRQREEETDRGSQKERDEEVKDRDRSSKEKTV 2627 1455545666777777777777778888888888888888888888888888888888888888886666666666666666665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1329 (0.0815037); expected 326.1 (0.02) Passed bias filter: 570 (0.0349565); expected 326.1 (0.02) Passed Vit filter: 154 (0.00944438); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.31u 0.51s 00:00:03.82 Elapsed: 00:00:01.00 # Mc/sec: 12155.67 // Query: T273044_1 [L=466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 2019.92 // Query: T273044_2 [L=466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 961 (0.0589354); expected 326.1 (0.02) Passed bias filter: 487 (0.0298663); expected 326.1 (0.02) Passed Vit filter: 119 (0.00729793); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.69 # Mc/sec: 1932.10 // Query: T273044_3 [L=465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1451 (0.0889856); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 1847.62 // Query: T381513_1 [L=4570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.71 # Mc/sec: 18414.07 // Query: T381513_2 [L=4569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 20109.43 // Query: T381513_3 [L=4569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.43s 00:00:01.55 Elapsed: 00:00:00.66 # Mc/sec: 19804.75 // Query: T052975_1 [L=7512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.42s 00:00:01.97 Elapsed: 00:00:00.69 # Mc/sec: 31145.73 // Query: T052975_2 [L=7512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.46s 00:00:01.99 Elapsed: 00:00:00.71 # Mc/sec: 30268.39 // Query: T052975_3 [L=7512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.45s 00:00:01.99 Elapsed: 00:00:00.70 # Mc/sec: 30700.79 // Query: T275907_1 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.8 0.0 0.013 14.8 0.0 2.3 2 DUF1510 Protein of unknown function (DUF1510) 0.014 15.2 0.2 0.038 13.8 0.2 1.7 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.055 13.6 0.2 0.055 13.6 0.2 2.6 2 DUF912 Nucleopolyhedrovirus protein of unknown function 0.071 12.9 4.9 0.12 12.1 4.9 1.2 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 0.09 13.5 0.2 0.09 13.5 0.2 7.7 2 EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.16 11.8 0.0 0.24 11.1 0.0 1.2 1 TMEM154 TMEM154 protein family 0.26 11.5 7.3 1.1 9.5 7.3 2.0 1 DUF3446 Domain of unknown function (DUF3446) Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 1.9 1.2 2.9e+03 78 78 .. 441 441 .. 369 523 .. 0.55 2 ? 14.8 0.0 5.6e-06 0.013 5 58 .. 610 663 .. 604 668 .. 0.65 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 1.2 DUF1510 78 s 78 + T275907_1 441 H 441 0 PP == domain 2 score: 14.8 bits; conditional E-value: 5.6e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275907_1 610 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 663 334444555566667777777777788888888888887777777766666554 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.2 1.6e-05 0.038 85 139 .. 590 642 .. 566 650 .. 0.52 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.6e-05 LRRC37AB_C 85 inesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275907_1 590 HRHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 642 2333333344444455556666667777777777666666555555554444..4 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 2.2 3.1 7.3e+03 44 44 .. 433 433 .. 348 531 .. 0.70 2 ? 13.6 0.2 2.4e-05 0.055 39 87 .. 593 639 .. 545 655 .. 0.57 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 3.1 DUF912 44 a 44 + T275907_1 433 H 433 0 PP == domain 2 score: 13.6 bits; conditional E-value: 2.4e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275907_1 593 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 639 111222222222222223344444444444444444444433222..11 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 4.9 5.2e-05 0.12 26 59 .. 623 656 .. 615 664 .. 0.69 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.2e-05 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssnan 59 +++ti+++++iii+ ++++ s s+ s sss+++ T275907_1 623 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSSP 656 6789999999998888888765544443333333 PP >> EphA2_TM Ephrin type-A receptor 2 transmembrane domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -86.2 91.6 7 1.6e+04 44 44 .. 461 461 .. 320 621 .. 0.71 2 ? 13.5 0.2 3.9e-05 0.09 4 49 .. 622 667 .. 619 674 .. 0.58 Alignments for each domain: == domain 1 score: -86.2 bits; conditional E-value: 7 EphA2_TM 44 e 44 + T275907_1 461 H 461 0 PP == domain 2 score: 13.5 bits; conditional E-value: 3.9e-05 EphA2_TM 4 aaiaglvllvilviivlvlvrrrsknrkqksdlsseekkeeensgk 49 ++i+ +++++i++i++++++++ s++++ +s++s++++ +++++++ T275907_1 622 IIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHHHHHH 667 4555666666666666666656666655555555555555555544 PP >> TMEM154 TMEM154 protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.0001 0.24 55 82 .. 616 643 .. 594 667 .. 0.66 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.0001 TMEM154 55 qlelvlmiiiPlvllillllvviiliqk 82 + + ++iii + +i++++v ii+i T275907_1 616 HHHHTIIIIITIITIIIIIIVTIIIISS 643 3444677777777777777777777754 PP >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 7.3 0.00045 1.1 22 51 .. 634 661 .. 623 671 .. 0.47 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00045 DUF3446 22 slvsglvgvanppsspssssssssssssss 51 +v ++ + ++pss+ss+sssss ssss T275907_1 634 IIV-TIIII-SSPSSSSSPSSSSSPSSSSH 661 222.24444.34444444444443333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1564 (0.0959156); expected 326.1 (0.02) Passed bias filter: 558 (0.0342205); expected 326.1 (0.02) Passed Vit filter: 225 (0.0137986); expected 16.3 (0.001) Passed Fwd filter: 69 (0.00423157); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 2.14u 0.54s 00:00:02.68 Elapsed: 00:00:00.81 # Mc/sec: 3514.23 // Query: T275907_2 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.03 14.5 11.6 0.077 13.2 11.6 1.6 1 DUF3446 Domain of unknown function (DUF3446) 1.4 8.4 12.4 2.1 7.8 12.4 1.2 1 SR-25 Nuclear RNA-splicing-associated protein 3.1 7.0 17.9 4.9 6.4 17.9 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 11.6 1.4e-05 0.077 20 69 .. 608 655 .. 599 662 .. 0.50 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.4e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssele 69 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ + T275907_2 608 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHRH 655 233444..233335666666666666666666555554444333333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.4 0.00039 2.1 65 98 .. 621 653 .. 618 660 .. 0.31 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00039 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275907_2 621 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 653 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 17.9 0.00089 4.9 177 204 .. 632 659 .. 615 663 .. 0.52 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00089 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275907_2 632 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 659 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1742 (0.106832); expected 326.1 (0.02) Passed bias filter: 720 (0.0441555); expected 326.1 (0.02) Passed Vit filter: 505 (0.0309702); expected 16.3 (0.001) Passed Fwd filter: 84 (0.00515148); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.77u 0.56s 00:00:03.33 Elapsed: 00:00:00.90 # Mc/sec: 3162.81 // Query: T275907_3 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 8.8 0.0 1.7 8.8 0.0 2.4 2 DUF912 Nucleopolyhedrovirus protein of unknown function (D Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 4.3 1 1.6e+04 38 38 .. 478 478 .. 424 519 .. 0.61 2 ? 8.8 0.0 0.00011 1.7 40 83 .. 615 657 .. 597 661 .. 0.45 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 DUF912 38 k 38 + T275907_3 478 S 478 0 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00011 DUF912 40 kksaaeknditekesnaaekaqalnillisllavvcvlvllyvi 83 +s++++++ ++++++ ++++ + li+++ ++++++++ +i T275907_3 615 PSSSYHHHHHHHHHHH-HHHHRHHHHHLITIIIIITIIIIVTII 657 2223333333332322.333444444555555555555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1623 (0.0995339); expected 326.1 (0.02) Passed bias filter: 768 (0.0470992); expected 326.1 (0.02) Passed Vit filter: 459 (0.0281491); expected 16.3 (0.001) Passed Fwd filter: 143 (0.00876978); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.00u 0.59s 00:00:04.59 Elapsed: 00:00:01.12 # Mc/sec: 2516.52 // Query: T257777_1 [L=2966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.3 8.6 4.7 3.8 7.0 4.7 1.8 1 Baculo_11_kDa Baculovirus 11 kDa family Domain annotation for each model (and alignments): >> Baculo_11_kDa Baculovirus 11 kDa family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 4.7 0.00023 3.8 36 82 .. 2187 2233 .. 2181 2235 .. 0.81 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00023 Baculo_11_kDa 36 FvLvicglvvfvvivlfilLlvvilknaeaeeaekekrektllaNld 82 v+v+ ++v++vv+++ ++++ ++ a ++++++ ++++ ll+ l+ T257777_1 2187 TVVVVVTVVMVVVVMMVVVVVAAMMVVAATSSIHHGQYRRCLLSSLG 2233 57888888888888888888889999999999999999999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 592 (0.0363057); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 13054.19 // Query: T257777_2 [L=2966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 12856.40 // Query: T257777_3 [L=2966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:00.67 # Mc/sec: 12664.51 // Query: T188441_1 [L=4837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 921 (0.0564823); expected 326.1 (0.02) Passed bias filter: 379 (0.023243); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.45s 00:00:02.23 Elapsed: 00:00:00.78 # Mc/sec: 17740.81 // Query: T188441_2 [L=4837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.40s 00:00:02.12 Elapsed: 00:00:00.80 # Mc/sec: 17297.29 // Query: T188441_3 [L=4837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 7.0 5.6 9.5 6.2 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 5.6 0.00058 9.5 66 103 .. 1637 1674 .. 1634 1695 .. 0.62 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00058 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188441_3 1637 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 1674 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 947 (0.0580768); expected 326.1 (0.02) Passed bias filter: 493 (0.0302343); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.14u 0.41s 00:00:02.55 Elapsed: 00:00:00.73 # Mc/sec: 18955.94 // Query: T052681_1 [L=288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 1525.78 // Query: T052681_2 [L=288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.59 # Mc/sec: 1396.47 // Query: T052681_3 [L=287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.62 # Mc/sec: 1324.29 // Query: T138206_1 [L=8884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.59u 0.50s 00:00:03.09 Elapsed: 00:00:00.79 # Mc/sec: 32171.66 // Query: T138206_2 [L=8883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.21u 0.43s 00:00:03.64 Elapsed: 00:00:01.00 # Mc/sec: 25412.75 // Query: T138206_3 [L=8883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.60u 0.44s 00:00:03.04 Elapsed: 00:00:00.94 # Mc/sec: 27034.84 // Query: T188425_1 [L=5335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.8 6.9 5.6 11 6.0 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 5.6 0.00065 11 66 103 .. 2135 2172 .. 2132 2193 .. 0.62 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00065 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188425_1 2135 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2172 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1005 (0.0616338); expected 326.1 (0.02) Passed bias filter: 549 (0.0336686); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.84u 0.51s 00:00:03.34 Elapsed: 00:00:00.87 # Mc/sec: 17543.14 // Query: T188425_2 [L=5334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 973 (0.0596713); expected 326.1 (0.02) Passed bias filter: 436 (0.0267386); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.66u 0.43s 00:00:03.09 Elapsed: 00:00:00.85 # Mc/sec: 17952.55 // Query: T188425_3 [L=5334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.41s 00:00:02.39 Elapsed: 00:00:00.85 # Mc/sec: 17952.55 // Query: T106529_1 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 3309.17 // Query: T106529_2 [L=775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 3260.50 // Query: T106529_3 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.71 # Mc/sec: 3118.71 // Query: T112890_1 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.53 # Mc/sec: 3087.54 // Query: T112890_2 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.052 13.0 7.2 18 5.0 0.0 4.8 5 MAP1B_neuraxin Neuraxin and MAP1B repeat Domain annotation for each model (and alignments): >> MAP1B_neuraxin Neuraxin and MAP1B repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.1 0.1 1.7e+03 1 9 [. 307 315 .. 307 315 .. 0.77 2 ? 1.0 0.1 0.019 3.1e+02 1 7 [. 346 352 .. 346 354 .. 0.91 3 ? 2.3 0.0 0.0077 1.3e+02 1 9 [. 356 364 .. 356 365 .. 0.90 4 ? 5.0 0.0 0.0011 18 1 9 [. 396 404 .. 396 405 .. 0.95 5 ? 4.7 0.1 0.0013 21 1 9 [. 416 424 .. 416 424 .. 0.95 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.1 MAP1B_neuraxin 1 TTrtPddSg 9 ++rtP+ +g T112890_2 307 IIRTPGPGG 315 58***9665 PP == domain 2 score: 1.0 bits; conditional E-value: 0.019 MAP1B_neuraxin 1 TTrtPdd 7 T+rtP++ T112890_2 346 TIRTPGV 352 9****97 PP == domain 3 score: 2.3 bits; conditional E-value: 0.0077 MAP1B_neuraxin 1 TTrtPddSg 9 ++rtP+++g T112890_2 356 AIRTPGAGG 364 58*****98 PP == domain 4 score: 5.0 bits; conditional E-value: 0.0011 MAP1B_neuraxin 1 TTrtPddSg 9 T+rtP+++g T112890_2 396 TIRTPGVGG 404 9******98 PP == domain 5 score: 4.7 bits; conditional E-value: 0.0013 MAP1B_neuraxin 1 TTrtPddSg 9 T+rtP+++g T112890_2 416 TIRTPGVGG 424 9******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 2592.91 // Query: T112890_3 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 2592.91 // Query: T059878_1 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 2674.25 // Query: T059878_2 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 3020.29 // Query: T059878_3 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3289.95 // Query: T300737_1 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 4572.56 // Query: T300737_2 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 14.8 6.0 0.046 13.7 6.0 1.6 1 Mucin-like Mucin-like 6.1 5.8 8.3 9.3 5.2 8.3 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 6.0 5.6e-06 0.046 7 87 .. 216 296 .. 206 300 .. 0.85 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 5.6e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300737_2 216 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 296 455566678899999999999999999999999999999999999999999999999999999988999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 8.3 0.0011 9.3 242 305 .. 238 296 .. 211 311 .. 0.62 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300737_2 238 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 296 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 4220.82 // Query: T300737_3 [L=958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-09 36.5 0.7 6.7e-09 35.6 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.2e-06 27.5 4.4 4.6e-06 26.5 4.4 1.4 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.6 0.7 8.2e-13 6.7e-09 2 62 .. 393 454 .. 392 457 .. 0.86 Alignments for each domain: == domain 1 score: 35.6 bits; conditional E-value: 8.2e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300737_3 393 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 454 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 4.4 5.6e-10 4.6e-06 10 82 .. 308 380 .. 295 387 .. 0.54 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 5.6e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300737_3 308 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 380 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4894.06 // Query: T232593_1 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.74 # Mc/sec: 7855.68 // Query: T232593_2 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 9529.85 // Query: T232593_3 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 8548.83 // Query: T369099_1 [L=1869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 7863.08 // Query: T369099_2 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 8221.59 // Query: T369099_3 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.76 # Mc/sec: 7031.62 // Query: T368803_1 [L=708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 3492.19 // Query: T368803_2 [L=707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.75 # Mc/sec: 2696.81 // Query: T368803_3 [L=707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.69 # Mc/sec: 2931.31 // Query: T316020_1 [L=1244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 551 (0.0337912); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.43s 00:00:01.55 Elapsed: 00:00:00.70 # Mc/sec: 5084.10 // Query: T316020_2 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 5080.02 // Query: T316020_3 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.4 8.0 5.5 6.4 7.1 3.3 2.7 2 COX17 Cytochrome C oxidase copper chaperone (COX17) Domain annotation for each model (and alignments): >> COX17 Cytochrome C oxidase copper chaperone (COX17) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 3.3 0.00039 6.4 3 40 .. 990 1030 .. 988 1039 .. 0.84 2 ? -1.3 0.0 0.16 2.7e+03 34 46 .. 1039 1051 .. 1034 1052 .. 0.82 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00039 COX17 3 lKpCCaCpetKkaRDeCilesgaeee....kCkelieahkaC 40 + p C+C +t ++ +C+ ++++++ +C i+ah++C T316020_3 990 PTPSCVCTHTHSNTHQCLPLHTSSHThttsHCP-HIHAHTQC 1030 5689**************999866667787886.699****9 PP == domain 2 score: -1.3 bits; conditional E-value: 0.16 COX17 34 ieahkaCmrslGF 46 + h+aC+ + F T316020_3 1039 THTHNACLSAHSF 1051 578*****99988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 627 (0.0384521); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.42s 00:00:01.60 Elapsed: 00:00:00.85 # Mc/sec: 4183.54 // Query: T000135_1 [L=2640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.40s 00:00:01.59 Elapsed: 00:00:00.81 # Mc/sec: 9324.19 // Query: T000135_2 [L=2640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 10206.20 // Query: T000135_3 [L=2639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.73 # Mc/sec: 10342.10 // Query: T172324_1 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-05 24.4 0.0 4.1e-05 23.7 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 2.5e-09 4.1e-05 5 56 .. 401 453 .. 398 476 .. 0.85 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 2.5e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + T172324_1 401 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASE 453 68*******99999******766766.557778999**************9965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 7411.34 // Query: T172324_2 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.62 # Mc/sec: 7645.80 // Query: T172324_3 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 7900.66 // Query: T004097_1 [L=1777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.70 # Mc/sec: 7262.42 // Query: T004097_2 [L=1777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.78 # Mc/sec: 6517.56 // Query: T004097_3 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 7363.53 // Query: T275605_1 [L=2418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.30s 00:00:01.39 Elapsed: 00:00:00.89 # Mc/sec: 7772.46 // Query: T275605_2 [L=2418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.74 # Mc/sec: 9347.96 // Query: T275605_3 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 9344.09 // Query: T258990_1 [L=2811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.41s 00:00:01.59 Elapsed: 00:00:00.79 # Mc/sec: 10179.48 // Query: T258990_2 [L=2811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 12002.68 // Query: T258990_3 [L=2811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 6.7 6.6 10 5.7 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00062 10 6 41 .. 1870 1905 .. 1856 1916 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00062 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258990_3 1870 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1905 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.28s 00:00:01.40 Elapsed: 00:00:00.67 # Mc/sec: 12002.68 // Query: T077414_1 [L=1532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 6351.87 // Query: T077414_2 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.61 # Mc/sec: 7180.21 // Query: T077414_3 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 7684.09 // Query: T097222_1 [L=1903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 7.9 56.5 2.5 7.3 56.5 1.1 1 Nop53 Nop53 (60S ribosomal biogenesis) 9.8 4.7 25.1 15 4.0 25.1 1.2 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Nop53 Nop53 (60S ribosomal biogenesis) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 56.5 0.00031 2.5 200 302 .. 1274 1381 .. 1268 1411 .. 0.63 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00031 Nop53 200 kaveaEkkrekeeeklerqlekiaekaataeareeelseeddeeeeeeeeeeeeeeeeeee.......knvkkkpkrKTkaqRnkekrrkeeekeeke 290 k+ ++E+k+e+++e+ +r++++ +++++ ++++e+e e+++ +ee + +e+e++e+e++ k++++k+krK k+qR+k++r+++++k++ke T097222_1 1274 KERKKERKKERKRERRKRERKEGRKERKRKKKKEKERKERKE--KEERKVKEKERKEREGKggrergrKRKRRKKKRKRKKQRKKRERERKRKKKKKE 1369 555666666666666666666665555555555554444444..333334444444444446688888777888899999999999888888777777 PP Nop53 291 ekkekkkekqle 302 ++k+kk+ek+ e T097222_1 1370 KEKKKKREKERE 1381 777776666533 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 25.1 0.0019 15 229 315 .. 1280 1377 .. 1266 1404 .. 0.31 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.0019 Presenilin 229 aekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse................seeeeeeesaeaeseaeesseekeeeessesseeeee 309 ++k+++++++++e++e ++e++++++ke+e++e++++++++ +e + +++++++++ +++++++e+e++++++++e+e T097222_1 1280 RKKERKRERRKRERKEGRKERKRKKKKEKERKERKEKEERKVKEkerkeregkggrergrK-----RKRRKKKRKRKKQRKKRERERKRKKKKKEKE 1371 2222222222222222222222222222222222222222222222233445554333221.....1111111111111111111111111111111 PP Presenilin 310 eeeeee 315 +++++e T097222_1 1372 KKKKRE 1377 111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1968 (0.120692); expected 326.1 (0.02) Passed bias filter: 579 (0.0355084); expected 326.1 (0.02) Passed Vit filter: 358 (0.0219551); expected 16.3 (0.001) Passed Fwd filter: 78 (0.00478352); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.67u 0.44s 00:00:03.11 Elapsed: 00:00:00.90 # Mc/sec: 6049.07 // Query: T097222_2 [L=1903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1478 (0.0906415); expected 326.1 (0.02) Passed bias filter: 386 (0.0236723); expected 326.1 (0.02) Passed Vit filter: 201 (0.0123268); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.35s 00:00:02.23 Elapsed: 00:00:00.82 # Mc/sec: 6639.22 // Query: T097222_3 [L=1902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 17.4 15.5 0.0023 16.6 15.5 1.3 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 15.5 1.4e-07 0.0023 215 316 .. 1266 1372 .. 1262 1426 .. 0.41 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1.4e-07 Presenilin 215 iYsaevvvlaaeeeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse...........seeeeeeesaeaeseaeesseekeeees 300 i++++ ++e+++e+++++k++e+++ +k+ ++++e+++e+++++e +++++s+++ + e++++++++e+++++e+k+ee++ T097222_3 1266 IFDSTFLERKKERKKEREKERKKKERKKGRKEGKKEKEKERERKKRKERKRRKESKRKreegkgregrkR----ERKKEKEKKEKKKKKETKKEERK 1358 5666666665555443333222222222222222222222222222222222222222344544432211....11111111111111111111111 PP Presenilin 301 sesseeeeeeeeeeee 316 +++++ e++e+e++e T097222_3 1359 RKKEK--EKKERERKE 1372 11111..111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1995 (0.122348); expected 326.1 (0.02) Passed bias filter: 682 (0.0418251); expected 326.1 (0.02) Passed Vit filter: 416 (0.0255121); expected 16.3 (0.001) Passed Fwd filter: 98 (0.00601006); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.20u 0.51s 00:00:03.71 Elapsed: 00:00:01.14 # Mc/sec: 4731.56 // Query: T227172_1 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 7272.53 // Query: T227172_2 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 7536.99 // Query: T227172_3 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 7147.14 // Query: T175028_1 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 7083.02 // Query: T175028_2 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 6962.97 // Query: T175028_3 [L=1435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6516.34 // Query: T195971_1 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.67 # Mc/sec: 12886.54 // Query: T195971_2 [L=3017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 12882.27 // Query: T195971_3 [L=3017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.64 # Mc/sec: 13486.13 // Query: T372538_1 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 5815.46 // Query: T372538_2 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-19 68.2 0.1 7.7e-19 67.6 0.1 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.6 0.1 4.7e-23 7.7e-19 308 367 .. 1103 1164 .. 1098 1165 .. 0.97 Alignments for each domain: == domain 1 score: 67.6 bits; conditional E-value: 4.7e-23 TT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 k+ qPr++yPakls++++ eik f k++lrd+++trPa ++llke + er++ yq+l+++ T372538_2 1103 KNSQPRVSYPAKLSFLSEEEIKSFTVKQMLRDFVTTRPASQELLKEalNVERNNWYQPLQKH 1164 689*********************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 5912.38 // Query: T372538_3 [L=1239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-70 237.7 24.8 1.5e-69 234.5 24.8 2.0 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.1 13.0 12.2 0.019 15.4 8.1 1.8 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.21 10.8 6.3 0.3 10.2 6.3 1.2 1 CorA CorA-like Mg2+ transporter protein 0.35 10.7 2.9 0.66 9.8 2.9 1.4 1 DUF1664 Protein of unknown function (DUF1664) 0.81 9.9 8.0 2 8.6 8.0 1.6 1 ABC_tran_CTD ABC transporter C-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 234.5 24.8 4.7e-73 1.5e-69 2 297 .. 832 1093 .. 829 1113 .. 0.88 Alignments for each domain: == domain 1 score: 234.5 bits; conditional E-value: 4.7e-73 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiik. 89 Gk + +k +nsk ++ s+P ++ s a e+++++k+f+e+ + d+++ + ++lke + +++ke + k ++e + i T372538_3 832 GKNR---RKKAENSKNQNVSSPKDQN-SLAAR--EQNWMEKEFDEFTEVDFRRwviTNSSKLKEHVLTQCKEAKnLGKRLDELLTR---ITS* 915 5555...67889*******9997655.44444..9*****************966668899***********87555666653222...1123 PP ...............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 90 ekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqv 182 ek+ + ++++elk+ ++el++ s++s+i+++eer+s +ed+++ei++e rek k +qslq+ T372538_3 916 EKN------I----NDMMELKSTARELREAYT------------------SINSQINQVEERISEIEDQLNEIKQEDNIREKSEK--KQSLQE 978 333......2....378************998..................*******************************9987..69**** PP HHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EE CS Transposase_22 183 iqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvt 275 i+d+vk Pnl liGv+es+ e+++klen+l++ii+en Pnl +++n++iqei rtP r++ +ra++rhii+r+tkv+ k+k+l+a+rekGrvt T372538_3 979 IRDYVKNPNLHLIGVPESDGENGTKLENTLQDIIQENIPNLTRQINIQIQEILRTPLRHSLRRATPRHIIIRFTKVEIKEKMLRAAREKGRVT 1071 ********************************************************************************************* PP ETTEEEEEEE---HHHHHHHHH CS Transposase_22 276 lkGkPirltadlsaetlkarre 297 kG Pirlta ls etl arre T372538_3 1072 HKGGPIRLTAHLSVETLLARRE 1093 ********************96 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 8.1 5.8e-06 0.019 6 96 .. 887 984 .. 885 986 .. 0.86 2 ? -2.3 0.1 1.9 6.3e+03 43 67 .. 1001 1026 .. 995 1065 .. 0.66 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 5.8e-06 Syntaxin-6_N 6 vkeeVqkslnkleslyrrweelledtss.s....tseeldetrteLrkalrsiewdledLeetvriveknpskfkide..kelsrrrafveevreev 95 ke V + +++++l +r+ ell+ +s + el++t +eLr+a+ si+ +++++ee ++ +e + ++ k ++ +e s++++ ++e+r+ v T372538_3 887 LKEHVLTQCKEAKNLGKRLDELLTRITS*EkninDMMELKSTARELREAYTSINSQINQVEERISEIEDQLNEIKQEDniREKSEKKQSLQEIRDYV 983 689999999**********999999877735777999******************************9977775554424799999********999 PP Syntaxin-6_N 96 k 96 k T372538_3 984 K 984 7 PP == domain 2 score: -2.3 bits; conditional E-value: 1.9 Syntaxin-6_N 43 rteLrkalrsi.ewdledLeetvriv 67 t+L+++l++i ++++ +L + ++i T372538_3 1001 GTKLENTLQDIiQENIPNLTRQINIQ 1026 57788888886245577777777654 PP >> CorA CorA-like Mg2+ transporter protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 6.3 9.1e-05 0.3 113 211 .. 929 1026 .. 888 1033 .. 0.79 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 9.1e-05 CorA 113 yrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrrala.pnrevlkrllakaddkllddedkeylrdlldelerllemle 209 +r l+e +++ ++ ++ee++ e+ed+l++ ++++ +re ++ +++l ++r++++ pn ++ + + +d+++ ++ ++ + + +++++ +l ++++ T372538_3 929 ARELREAYTSINSQINQVEERISEIEDQLNEIKQEDNIREKSEKKQSLQEIRDYVKnPNLHLI-GVPE-SDGENGTKLENTLQDIIQENIPNLTRQIN 1024 5567888889999*****************************************972566666.7777.77777776666666666666666777777 PP CorA 210 al 211 ++ T372538_3 1025 IQ 1026 65 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 2.9 0.0002 0.66 30 122 .. 921 962 .. 880 988 .. 0.56 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0002 DUF1664 30 dlm..fvTrrslsdavasvskqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeiee 122 d+m T r+l++a +s+ +q++qv e +++ ++L +ei++ T372538_3 921 DMMelKSTARELREAYTSINSQINQVEERISEIEDQL-----------------------------------------------------NEIKQ 962 3331123445555555555555555555555554444.....................................................44433 PP >> ABC_tran_CTD ABC transporter C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 8.0 0.00061 2 4 55 .. 929 978 .. 926 981 .. 0.83 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00061 ABC_tran_CTD 4 ykeqre.leeleaeIeaLEaeiaeleaeladpelysdpeklaelsaeleelea 55 +e re + + ++I++ E++i+e+e++l++ ++++ + e s++++ l++ T372538_3 929 ARELREaYTSINSQINQVEERISEIEDQLNEI---KQEDNIREKSEKKQSLQE 978 5566665778********************66...577889999999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1555 (0.0953637); expected 326.1 (0.02) Passed bias filter: 446 (0.0273519); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 5370.56 // Query: T140970_1 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 6022.05 // Query: T140970_2 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 753 (0.0461793); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.44s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 5392.88 // Query: T140970_3 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0056 16.1 0.0 0.011 15.2 0.0 1.4 1 Spem1 Spermatid maturation protein 1 Domain annotation for each model (and alignments): >> Spem1 Spermatid maturation protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 6.7e-07 0.011 6 47 .. 35 76 .. 30 79 .. 0.82 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 6.7e-07 Spem1 6 wtdtlgccsqyqespqdaedllllLlgLiiLvniginvvtvm 47 ++ c + qd d +llLlg iL+n+ invvt++ T140970_3 35 YHGAQVCSGTNPRKCQDLGDSILLLLGSFILLNVWINVVTLV 76 5555566667778899************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 5018.37 // Query: T335612_1 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-74 248.7 87.5 9.2e-14 51.6 5.5 10.9 10 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 3.6 1.4e-12 2.2e-08 48 95 .. 56 103 .. 54 111 .. 0.85 2 ! 4.4 4.6 0.0023 37 5 63 .. 93 152 .. 91 155 .. 0.78 3 ! 37.1 1.8 1.8e-13 2.9e-09 44 99 .. 182 237 .. 173 238 .. 0.89 4 ! 51.6 5.5 5.6e-18 9.2e-14 56 121 .. 221 286 .. 220 289 .. 0.95 5 ! 15.2 0.4 1.1e-06 0.017 94 117 .. 285 308 .. 285 312 .. 0.86 6 ! 28.4 3.9 8.8e-11 1.4e-06 10 36 .. 308 334 .. 306 340 .. 0.94 7 ! 47.6 6.9 9.9e-17 1.6e-12 33 93 .. 380 440 .. 374 447 .. 0.89 8 ! 6.0 0.1 0.00075 12 79 99 .. 452 472 .. 450 474 .. 0.88 9 ! 41.4 1.5 8.4e-15 1.4e-10 51 97 .. 477 522 .. 476 529 .. 0.90 10 ! 37.2 2.9 1.6e-13 2.7e-09 80 117 .. 728 765 .. 719 773 .. 0.88 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 1.4e-12 DUF4575 48 rlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrg 95 r g +p geegl lsprlag asp cdg pksq ++g p g T335612_1 56 RWGGPKPGGEEGLALSPRLAGGASPLCDGGPKSQWGNQGLALSPCLAG 103 789999****************************99998766665554 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0023 DUF4575 5 eglalspllpgvppppamgv..prdrggrgagsqstprggcllpprlgsqqpa.geeglvls 63 +glalsp l g p g p g + ggcl r gs +p geegl ls T335612_1 93 QGLALSPCLAGGASPLRWGY*qPGVEEGIALSPH--SCGGCLPLLRSGSSEPGgGEEGLALS 152 6999999999999999999554877666555544..469**9999***999963699*9998 PP == domain 3 score: 37.1 bits; conditional E-value: 1.8e-13 DUF4575 44 llpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppp 99 +l +g +p geegl lsprlag as cdg pksq ++g gvppp T335612_1 182 ILGSTIGGPKPVGEEGLALSPRLAGGASHLCDGGPKSQWGNQGLALNLCLGGVPPP 237 567789999********************************998777788899998 PP == domain 4 score: 51.6 bits; conditional E-value: 5.6e-18 DUF4575 56 geeglvlsprlagdaspccdgspksqgvkrg.wlsvptsrgvppppaigvliarggrgagsqslprg 121 g++gl l+ l g p cdg +sqg krg svpt g+ppppa+gvl +rggrg+gsqslprg T335612_1 221 GNQGLALNLCLGGVPPPSCDGGTNSQGRKRG*L-SVPTLVGLPPPPAMGVLRTRGGRGTGSQSLPRG 286 789*************************99777.9*******************************9 PP == domain 5 score: 15.2 bits; conditional E-value: 1.1e-06 DUF4575 94 rgvppppaigvliarggrgagsqs 117 rg ppa+gvl arggrg sqs T335612_1 285 RGGASPPAMGVLTARGGRGDSSQS 308 6778999************99998 PP == domain 6 score: 28.4 bits; conditional E-value: 8.8e-11 DUF4575 10 spllpgvppppamgvprdrggrgagsq 36 spl gvppppamgvpr rggrg+gsq T335612_1 308 SPLSWGVPPPPAMGVPRARGGRGTGSQ 334 89************************8 PP == domain 7 score: 47.6 bits; conditional E-value: 9.9e-17 DUF4575 33 agsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvpts 93 prggcl r gs +p geegl lsp lag as dg pks+g krg lsvp s T335612_1 380 LALSPHPRGGCLPLLRWGSPEPGGEEGLALSPCLAGGASAPSDGGPKSKGGKRGSLSVPVS 440 455568*****************************************************85 PP == domain 8 score: 6.0 bits; conditional E-value: 0.00075 DUF4575 79 ksqgvkrgwlsvptsrgvppp 99 k g +rg ++vp+srg+ppp T335612_1 452 KEPGEERGRFAVPASRGLPPP 472 567889**************9 PP == domain 9 score: 41.4 bits; conditional E-value: 8.4e-15 DUF4575 51 sqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvp 97 sq+p geegl lsprlag asp cdgspksqg rg s p+ g p T335612_1 477 SQEPGGEEGLALSPRLAGGASPHCDGSPKSQGG-RGDGSQPSQNGGP 522 89*****************************95.7888888877766 PP == domain 10 score: 37.2 bits; conditional E-value: 1.6e-13 DUF4575 80 sqgvkrgwlsvptsrgvppppaigvliarggrgagsqs 117 sq krgwlsvp+ rgv p p +gv arggrgagsq T335612_1 728 SQWGKRGWLSVPALRGVSPHPVMGVTRARGGRGAGSQP 765 8899********************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 6193.92 // Query: T335612_2 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-70 234.5 88.8 1.1e-20 74.1 10.3 9.5 9 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.6 0.9 4.5e-12 7.3e-08 74 110 .. 55 91 .. 49 93 .. 0.93 2 ! 15.9 1.8 6.2e-07 0.01 82 102 .. 90 110 .. 88 120 .. 0.84 3 ! 11.8 0.2 1.1e-05 0.19 64 96 .. 125 157 .. 122 164 .. 0.82 4 ! 24.2 1.1 1.7e-09 2.7e-05 82 110 .. 193 221 .. 187 223 .. 0.90 5 ! 30.1 5.9 2.6e-11 4.3e-07 81 129 .] 219 267 .. 217 267 .. 0.86 6 ! 29.6 5.6 3.7e-11 6e-07 3 63 .. 274 334 .. 272 337 .. 0.94 7 ! 74.1 10.3 6.5e-25 1.1e-20 44 118 .. 364 438 .. 355 440 .. 0.93 8 ! 69.9 16.3 1.3e-23 2.2e-19 15 113 .. 415 512 .. 415 523 .. 0.92 9 ! 24.4 0.6 1.4e-09 2.4e-05 29 66 .. 730 767 .. 728 782 .. 0.84 Alignments for each domain: == domain 1 score: 32.6 bits; conditional E-value: 4.5e-12 DUF4575 74 cdgspksqgvkrgwlsvptsrgvppppaigvliargg 110 dg sq kr wlsvp+srgvppp a+gvl a gg T335612_2 55 NDGGVLSQEGKRVWLSVPASRGVPPPSAMGVLRASGG 91 589999****************************999 PP == domain 2 score: 15.9 bits; conditional E-value: 6.2e-07 DUF4575 82 gvkrgwlsvptsrgvppppai 102 g rgwlsvp+srgvppp T335612_2 90 GGTRGWLSVPASRGVPPPCDG 110 678**************9765 PP == domain 3 score: 11.8 bits; conditional E-value: 1.1e-05 DUF4575 64 prlagdaspccdgspksqgv.krgwlsvptsrgv 96 p l asp cd p+s+g kr wlsv r v T335612_2 125 PTLVVGASPSCDRGPQSRGAgKRVWLSVI-PRKV 157 788999************9769*****95.3445 PP == domain 4 score: 24.2 bits; conditional E-value: 1.7e-09 DUF4575 82 gvkrgwlsvptsrgvppppaigvliargg 110 kr wlsvp+srgvpp a+gvl a gg T335612_2 193 WGKRVWLSVPASRGVPPTSAMGVLRASGG 221 569***********************999 PP == domain 5 score: 30.1 bits; conditional E-value: 2.6e-11 DUF4575 81 qgvkrgwlsvptsrgvppppaigvliarggrgagsqslprgwsftp.lrw 129 g rgwls+ +s g pppa+gv arggrg sqs p w p lrw T335612_2 219 SGGTRGWLSISASGGCLPPPAMGVPTARGGRGDSSQSPP-SWGCLPlLRW 267 5788********************************977.5666662577 PP == domain 6 score: 29.6 bits; conditional E-value: 3.7e-11 DUF4575 3 rgeglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglvls 63 eglalsp l gvppp g + g rggcl r gs +p geegl ls T335612_2 274 GEEGLALSPCLAGVPPPLRWGYSQPGAEEGIALSPHSRGGCLPLLRWGSPEPGGEEGLALS 334 579*********************99999*99999************************98 PP == domain 7 score: 74.1 bits; conditional E-value: 6.5e-25 DUF4575 44 llpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppppaigvliarggrgagsqsl 118 +l +g +p g+ + p lag asp cdg p+sqg kr wlsvp+srgvppppa+gvl a+ggrga sqs T335612_2 364 ILGSTMGGPKPGGKRVWLSVPTLAGGASPSCDGGPQSQGGKRDWLSVPASRGVPPPPAMGVLRAKGGRGARSQSP 438 5677889999****999999*****************************************************95 PP == domain 8 score: 69.9 bits; conditional E-value: 1.3e-23 DUF4575 15 gvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwl.svptsrgvppppaigvliarggrga 113 gvppppamgv r +ggrga sqs r gcllp g++ + g sp gd+ p cd pksq krgwl p+srgvppp a+gv arg g T335612_2 415 GVPPPPAMGVLRAKGGRGARSQSPCREGCLLPCDEGAKSQGRKGGGSQSPP-RGDCLPHCDSGPKSQAGKRGWL*V-PASRGVPPPTAMGVPRARGEEGM 512 8***********************************998888888888875.6********************555.9******************9886 PP == domain 9 score: 24.4 bits; conditional E-value: 1.4e-09 DUF4575 29 ggrgagsqstprggcllpprl..gsqqpageeglvlsprl 66 ggrgagsqs p ggcl p l gsq+p geegl l+ + T335612_2 730 GGRGAGSQSPPCGGCL--PTL*wGSQEPEGEEGLALNHHE 767 9**************7..56555***********998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.64 # Mc/sec: 6097.14 // Query: T335612_3 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-75 252.1 96.5 8e-17 61.5 10.1 11.3 11 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 2.8 1.7e-06 0.028 28 51 .. 62 85 .. 61 85 .. 0.90 2 ! 8.8 0.5 0.0001 1.6 29 46 .. 90 107 .. 88 107 .. 0.85 3 ! 12.5 0.1 7.2e-06 0.12 99 117 .. 106 124 .. 105 129 .. 0.84 4 ! 14.5 2.0 1.7e-06 0.027 10 36 .. 124 151 .. 122 156 .. 0.74 5 ! 17.1 1.3 2.8e-07 0.0045 29 51 .. 193 215 .. 170 215 .. 0.90 6 ! 61.5 10.1 4.9e-21 8e-17 29 103 .. 220 294 .. 218 303 .. 0.92 7 ! 25.8 0.2 5.6e-10 9.2e-06 64 97 .. 308 340 .. 305 347 .. 0.86 8 ! 3.6 0.5 0.0041 66 106 119 .. 372 385 .. 368 387 .. 0.66 9 ! 57.4 16.0 9.1e-20 1.5e-15 2 73 .. 376 446 .. 374 457 .. 0.86 10 ! 41.4 5.6 8.4e-15 1.4e-10 4 61 .. 456 513 .. 452 520 .. 0.92 11 ! 43.6 0.1 1.7e-15 2.8e-11 50 93 .. 724 767 .. 715 792 .. 0.92 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4575 28 rggrgagsqstprggcllpprlgs 51 r grg+gsqs prggcl p r gs T335612_3 62 RRGRGSGSQSPPRGGCLPPLRWGS 85 789*************99999987 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0001 DUF4575 29 ggrgagsqstprggcllp 46 g gagsqs prggcl p T335612_3 90 GEPGAGSQSLPRGGCLPP 107 5679***********854 PP == domain 3 score: 12.5 bits; conditional E-value: 7.2e-06 DUF4575 99 ppaigvliarggrgagsqs 117 ppa+gvl arggrg sqs T335612_3 106 PPAMGVLTARGGRGDSSQS 124 8999999999999999998 PP == domain 4 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4575 10 spllpgvppppamgvprdrg.grgagsq 36 spll vppppa+gv r g grg+gsq T335612_3 124 SPLLWWVPPPPAIGVLRAGGrGRGSGSQ 151 8899999999999998864445555554 PP == domain 5 score: 17.1 bits; conditional E-value: 2.8e-07 DUF4575 29 ggrgagsqstprggcllpprlgs 51 ggrg+gsqs prggcl p r gs T335612_3 193 GGRGSGSQSPPRGGCLPPLRWGS 215 89**************9999987 PP == domain 6 score: 61.5 bits; conditional E-value: 4.9e-21 DUF4575 29 ggrgagsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppppaig 103 g gagsqs prgg+ r g qqp eeg+ lsp+ g asp cdg pk+ g kr wlsvp+srg pp g T335612_3 220 GEPGAGSQSLPRGGASPLLRWGYQQPGAEEGIALSPHPRGVASPSCDGGPKNPGGKRDWLSVPASRGCLPPCDGG 294 6679***********9999*************************************************9997655 PP == domain 7 score: 25.8 bits; conditional E-value: 5.6e-10 DUF4575 64 prlagdaspccdgspksqgvkrgwlsvptsrgvp 97 p l g asp cdg p+sqg kr wlsv r vp T335612_3 308 PTLVGGASPSCDGGPQSQGGKRDWLSVI-PRKVP 340 89************************95.34554 PP == domain 8 score: 3.6 bits; conditional E-value: 0.0041 DUF4575 106 iarggrgagsqslp 119 ++rggrg+gsqs p T335612_3 372 LSRGGRGSGSQSPP 385 46777777777655 PP == domain 9 score: 57.4 bits; conditional E-value: 9.1e-20 DUF4575 2 grgeglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgs.qqpageeglvlsprlagdaspc 73 grg g + sp gvppppamgvpr rggrg+gsqs prggcl p r gs +q geegl lspr+ as T335612_3 376 GRGSG-SQSPPSRGVPPPPAMGVPRARGGRGTGSQSLPRGGCLRPQRWGS*EQ-RGEEGLALSPRVVRGASSP 446 67777.4688899************************************9987.49*********98666543 PP == domain 10 score: 41.4 bits; conditional E-value: 8.4e-15 DUF4575 4 geglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglv 61 g+g sp l g+ p a+ vpr r grg gs+s prggcl p r sq+p g+ g + T335612_3 456 GKGEVRSPRLAGIASPTAIVVPRARRGRGVGSESPPRGGCLPPLRWESQEPGGKRGWI 513 678899************************************************9976 PP == domain 11 score: 43.6 bits; conditional E-value: 1.7e-15 DUF4575 50 gsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvpts 93 g +p geegl lsprlag sp cdg ksq krgwls t T335612_3 724 GRPKPVGEEGLALSPRLAGGVSPPCDGGHKSQRGKRGWLSTTTK 767 5678************************************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 6727.88 // Query: T342177_1 [L=3062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.73 # Mc/sec: 11999.81 // Query: T342177_2 [L=3062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.79 # Mc/sec: 11088.43 // Query: T342177_3 [L=3062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.74 # Mc/sec: 11837.65 // Query: T340137_1 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 6020.75 // Query: T340137_2 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.67 # Mc/sec: 5930.88 // Query: T340137_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.80 # Mc/sec: 4967.12 // Query: T139655_1 [L=115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.50 # Mc/sec: 657.99 // Query: T139655_2 [L=115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 577.18 // Query: T139655_3 [L=115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 89 (0.00545811); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 506.15 // Query: T212074_1 [L=6914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.35s 00:00:02.55 Elapsed: 00:00:00.91 # Mc/sec: 21736.02 // Query: T212074_2 [L=6913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.37s 00:00:02.43 Elapsed: 00:00:00.85 # Mc/sec: 23266.96 // Query: T212074_3 [L=6913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.78 # Mc/sec: 25355.02 // Query: T383186_1 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-08 32.7 0.3 0.013 15.5 0.0 5.8 8 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.4 0.0 0.0046 76 29 59 .. 108 138 .. 39 156 .. 0.74 2 ! 3.3 0.0 0.0049 80 3 31 .. 112 140 .. 105 170 .. 0.53 3 ? -2.4 0.0 0.29 4.8e+03 38 68 .. 233 263 .. 226 272 .. 0.48 4 ! 15.5 0.0 7.9e-07 0.013 3 69 .. 297 363 .. 294 372 .. 0.88 5 ! 9.7 0.0 5.2e-05 0.85 2 58 .. 331 392 .. 330 395 .. 0.80 6 ? -2.4 0.0 0.31 5e+03 38 61 .. 501 524 .. 465 539 .. 0.51 7 ! 5.1 0.0 0.0014 23 28 77 .] 603 653 .. 592 659 .. 0.74 8 ? -2.6 0.3 0.34 5.6e+03 12 21 .. 686 695 .. 668 703 .. 0.51 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.0046 Pentapeptide_4 29 teanlsnvnFdkcllsdvdfaeadlkrasFs 59 ++++++ F++ ++++ f+ + + +++F+ T383186_1 108 HSIPFHSIPFHSIPFHSTPFYSILFHSTPFH 138 4444444445555555555555555544444 PP == domain 2 score: 3.3 bits; conditional E-value: 0.0049 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFtea 31 F++ f+ ++ + F+++ ++++ F ++ T383186_1 112 FHSIPFHSIPFHSTPFYSILFHSTPFHSI 140 33333333344444444444444444443 PP == domain 3 score: -2.4 bits; conditional E-value: 0.29 Pentapeptide_4 38 FdkcllsdvdfaeadlkrasFsgcdlknvnf 68 F+++ l+++ + ++ +++F+ + ++ f T383186_1 233 FHSTPLHSTPLHPIPSHSIPFHSIPFHSIPF 263 5555555555555555555444444443333 PP == domain 4 score: 15.5 bits; conditional E-value: 7.9e-07 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 F++ f+ l+ + F+++ +++ + ++ ++ +F++c+l+++ + + + +++F+ + ++ f+ T383186_1 297 FHSIAFHSIPLHSIAFNSIAFHSIAMHSILFHPISFHSCELHSTPLHSIPFHSIPFHSIPFHSIPFH 363 88899999999999****************************************9998877777665 PP == domain 5 score: 9.7 bits; conditional E-value: 5.2e-05 Pentapeptide_4 2 dFtncsfnncklsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasF 58 +F++c ++ + l+ + F ++ +++ F ++++ + F+ + l+++++ + + ++F T383186_1 331 SFHSCELHSTPLHSIPFHSIPFHSIPFHSIPFhsipyHTIPFHYTPLHSTSLHSIPFHPIPF 392 7999***************9999999999999888765555777777777777776666665 PP == domain 6 score: -2.4 bits; conditional E-value: 0.31 Pentapeptide_4 38 FdkcllsdvdfaeadlkrasFsgc 61 +++ +++ +f ++ + ++++ T383186_1 501 LHSPPFHSIRFHPIPFHSTPLPST 524 444444455555555555444444 PP == domain 7 score: 5.1 bits; conditional E-value: 0.0014 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkdadF 77 F +++++++ F++ l+++ + + + ++F+ l ++ + s+ +++++F T383186_1 603 FHSIPFHSTPFHSLPLHSTALHSITVHPIPFHSTPLHSTPLhSNPFHSISF 653 667777777777777777777777777777777777777773346777765 PP == domain 8 score: -2.6 bits; conditional E-value: 0.34 Pentapeptide_4 12 klsnvnFsea 21 +++ + F ++ T383186_1 686 AFHSFAFHSI 695 2222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 3014.55 // Query: T383186_2 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00015 21.7 0.0 5.1 7.2 0.0 5.3 6 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.29 4.7e+03 23 41 .. 41 59 .. 21 64 .. 0.50 2 ? -2.8 0.0 0.4 6.6e+03 28 58 .. 110 140 .. 96 144 .. 0.65 3 ? -2.4 0.0 0.3 4.9e+03 28 58 .. 226 256 .. 220 270 .. 0.45 4 ! 7.2 0.0 0.00031 5.1 4 75 .. 331 413 .. 329 428 .. 0.76 5 ! 5.3 0.0 0.0012 19 11 59 .. 447 500 .. 441 522 .. 0.52 6 ? 0.4 0.0 0.041 6.7e+02 26 58 .. 527 559 .. 504 566 .. 0.61 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.29 Pentapeptide_4 23 lkdcnFteanlsnvnFdkc 41 ++++ +++++l+++ ++++ T383186_2 41 FHSTPLNSIPLHSTQLHST 59 2222333333333333333 PP == domain 2 score: -2.8 bits; conditional E-value: 0.4 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasF 58 F ++++++ F++ + ++ f+ + + +++F T383186_2 110 FHSIPFHSIPFHSIQPHSIPFYSIPPHSIPF 140 5666666666666666666666666666665 PP == domain 3 score: -2.4 bits; conditional E-value: 0.3 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasF 58 F ++++ ++ ++++ l+++ ++ + +++F T383186_2 226 FHSIPFYSTPLHSTPLHSTPSHPILFHSIPF 256 3333344444444444444444444444444 PP == domain 4 score: 7.2 bits; conditional E-value: 0.00031 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanl..........snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 ++ n ++l+ + F ++ +++ F ++++ + +++++ l+++ + + +++F+ + l ++ f+ ++++ T383186_2 331 HSTPANSTQLHSTPFHSILFHSIPFHSIPFhsipfltipyRSITLHSTPLHSTPSHSIPFHSTPFQYNALHSAPFHSiPFHTC 413 55556778888888888888888888888877777888887778888888888888888888888888888888866456666 PP == domain 5 score: 5.3 bits; conditional E-value: 0.0012 Pentapeptide_4 11 cklsnvnFsearlkdcnFteanlsnvn.....FdkcllsdvdfaeadlkrasFs 59 l+ + F+++ ++ F +++l +++ F+++ll+++ + +++ ++++ T383186_2 447 IPLHSFPFYSFPFHYIPFHSTPLGSTSfnfipFHSTLLHSSPLHYIQFHPIPYH 500 555555666666666666666664444334445555555555544444444333 PP == domain 6 score: 0.4 bits; conditional E-value: 0.041 Pentapeptide_4 26 cnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 + F +++l++ F+ + ++++ f+ + l +++F T383186_2 527 TPFHSIPLHSIPFHFTPIHSTTFQSIPLQSIPF 559 445555555555555555555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3107.30 // Query: T383186_3 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00039 20.4 0.0 0.014 15.4 0.0 3.5 5 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.35 5.8e+03 34 58 .. 109 133 .. 105 139 .. 0.56 2 ? -2.1 0.0 0.24 3.8e+03 10 33 .. 340 363 .. 334 378 .. 0.58 3 ! 15.4 0.0 8.4e-07 0.014 3 59 .. 452 508 .. 450 524 .. 0.84 4 ? -1.1 0.0 0.12 2e+03 38 61 .. 560 583 .. 529 596 .. 0.63 5 ? -3.6 0.0 0.73 1.2e+04 32 44 .. 613 625 .. 602 647 .. 0.56 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.35 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasF 58 ++ F++ +++ f+++ + +++F T383186_3 109 HSIPFHSIPFHSIPFNPILFHSIPF 133 4444555555555555555555555 PP == domain 2 score: -2.1 bits; conditional E-value: 0.24 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanl 33 + l+ + F+++ +++ F ++++ T383186_3 340 STPLHSIPFYSIPFHSIPFHSIPF 363 444555555555555555555555 PP == domain 3 score: 15.4 bits; conditional E-value: 8.4e-07 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 F++ +f+ ++++ + + a l++ +F++++l ++ ++++++++ +f + l ++sF+ T383186_3 452 FHSIHFHSTIFHSTPLHLAPLHSISFRSTPLYSTPLHSTTFNSIQFHTTPLPSISFH 508 9999***************************77777777777777777766666665 PP == domain 4 score: -1.1 bits; conditional E-value: 0.12 Pentapeptide_4 38 FdkcllsdvdfaeadlkrasFsgc 61 ++++l ++v +++++ ++s++ T383186_3 560 LHSTLCHSVTHSGIQWHNLSLHFI 583 566666777777777777777655 PP == domain 5 score: -3.6 bits; conditional E-value: 0.73 Pentapeptide_4 32 nlsnvnFdkclls 44 +ls++ F+++ ++ T383186_3 613 PLSATPFHSTPFH 625 3344444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 2927.17 // Query: T369034_1 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 5552.82 // Query: T369034_2 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.60 # Mc/sec: 5645.37 // Query: T369034_3 [L=1184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 5376.54 // Query: T039039_1 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 785 (0.0481418); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 3255.90 // Query: T039039_2 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 2930.31 // Query: T039039_3 [L=716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0035 17.2 2.0 0.78 9.6 0.1 2.3 2 DUF1664 Protein of unknown function (DUF1664) ------ inclusion threshold ------ 0.16 11.9 0.0 3.9 7.3 0.0 2.3 2 Laminin_II Laminin Domain II 0.63 9.2 7.9 0.98 8.6 7.9 1.2 1 APG6 Autophagy protein Apg6 1.4 7.6 6.8 1.9 7.2 2.9 1.9 2 Spc7 Spc7 kinetochore protein 2.4 8.2 27.9 4.2 7.5 10.0 2.4 2 FliJ Flagellar FliJ protein 3.4 7.9 10.5 36 4.6 0.3 3.8 4 Retrotrans_gag Retrotransposon gag protein 3.7 7.4 7.0 22 5.0 3.7 2.2 2 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein 3.8 7.3 18.1 13 5.6 4.9 2.5 2 Serine_rich Serine rich protein interaction domain 7 7.0 18.5 5.1 7.5 4.0 2.4 2 Snapin_Pallidin Snapin/Pallidin 8.4 4.3 7.1 12 3.8 7.1 1.1 1 EzrA Septation ring formation regulator, EzrA Domain annotation for each model (and alignments): >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.6 0.1 0.00048 0.78 49 121 .. 233 305 .. 226 308 .. 0.84 2 ! 7.2 0.5 0.0027 4.4 49 120 .. 310 381 .. 302 382 .. 0.79 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00048 DUF1664 49 qleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +l q ++l++ +hL q + ++ ++l + + + +++ +++++l ++++ ++++++ + +L ++l+++ T039039_3 233 RLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLH 305 4556666777777899999999999999999999999999999999999999999999999999999998875 PP == domain 2 score: 7.2 bits; conditional E-value: 0.0027 DUF1664 49 qleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 +l q ++l++ hL q++ ++ + l + + ++++ +++++++l ++++ + ++++ ++ L ++l+++ T039039_3 310 HLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHL 381 667777777777788888888888888888888888888888888888888888888888888888888776 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 0.0 0.0024 3.9 17 92 .. 229 301 .. 220 307 .. 0.84 2 ? 5.3 0.0 0.011 17 16 75 .. 284 343 .. 270 382 .. 0.54 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0024 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX CS Laminin_II 17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdni 92 + l+ l+q l+++++ l+++++ +++ +++++ + + + + +L + + L + l++l q+ + l + + T039039_3 229 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLH---LHQHL 301 56788999999999999999999999999999999999999999999999999999999999999888...55554 PP == domain 2 score: 5.3 bits; conditional E-value: 0.011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 16 leqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldkl 75 + l+ l+q l ++ + l+++++ ++ +++++ + + + + +L + + Ll+ l T039039_3 284 HQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYL 343 344444444444444444444444444444444444444444444444444444444444 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 7.9 0.0006 0.98 11 133 .. 231 365 .. 222 377 .. 0.57 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0006 APG6 11 leeldkeleelekerdayeeflkklekekkseek............eeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeee 98 l++l+++l++l+++ +++++l++l+ + ++ + ++ l +l++ l +l++ +l ++l +l++ ++l+++l++l+++l +l+++ + T039039_3 231 LHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQylhypyqdllhlHQHLYHLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLH 330 5667777777777777777777777777555555999995555555445555555555555555555555555555555555555555555555555544 PP APG6 99 eywrernalklelaeleeerdslkaqlehaqkqle 133 + + +l + l +l++ ++ l+++l h q++l T039039_3 331 HLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLL 365 44444444444444555555555555555555554 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.8 0.0045 7.3 153 233 .. 229 305 .. 223 307 .. 0.66 2 ? 7.2 2.9 0.0011 1.9 143 237 .. 282 379 .. 272 382 .. 0.66 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0045 Spc7 153 edkelLekqeeeldellpeleeekaelekeleklqeaaeelesidkeeLeelreelaelkeeieekkkelaelqeeleele 233 + +L+++ + l++ l+ l++++ l++ l++l + ++ ++L l++ l l++ ++++ + l l + l +l T039039_3 229 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQ----YLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLH 305 344456666666666666666666666666666666....33477888888888888888888888888888888777665 PP == domain 2 score: 7.2 bits; conditional E-value: 0.0011 Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaelekeleklqeaaeeles..id.keeLeelreelaelkeeieekkkelaelqeeleeleekie 237 l+++l l + +L+++ + l+e+ + l++++ l++ l +l + + l + + ++L l++ l l++ + ++++ l l + l +l + + T039039_3 282 HLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQylLHlLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLH 379 46677777888888888888888888888888888888888888887777666442235566666666666666666666666666666666666554 PP >> FliJ Flagellar FliJ protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 10.0 0.0026 4.2 5 80 .. 229 306 .. 226 315 .. 0.82 2 ? 5.5 11.3 0.01 17 4 79 .. 312 382 .. 309 382 .. 0.92 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0026 FliJ 5 reLaeaqrelqqaeekleeleqyrqeyqqqlsgea.q.glsaaelrnyqafisaldeaieqqqqelaqaekqvekare 80 ++L + +++l+ +++l l+qy+++++ l + + ++l ++++ + +l + + +q l ++++++++ e T039039_3 229 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYqYlHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLHE 306 678888999999999999999999999999988885578888999999999999999999999999999998888766 PP == domain 2 score: 5.5 bits; conditional E-value: 0.01 FliJ 4 areLaeaqrelqqaeekleeleqyrqeyqqqlsgeaqglsaaelrnyqafisaldeaieqqqqelaqaekqvekar 79 ++L + +++l ++l l qy+ ++ q l + + l+++++ + +l++ + +q l+++++++++ + T039039_3 312 HQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLH-----QPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHLQ 382 58899999********************99999999.....****************************9998865 PP >> Retrotrans_gag Retrotransposon gag protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.2 0.05 81 47 72 .. 232 257 .. 225 272 .. 0.78 2 ? 3.9 0.7 0.038 62 44 83 .. 285 324 .. 267 336 .. 0.77 3 ? 1.3 0.1 0.24 3.9e+02 45 75 .. 314 344 .. 309 351 .. 0.77 4 ? 4.6 0.3 0.022 36 47 75 .. 351 379 .. 343 382 .. 0.86 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.05 Retrotrans_gag 47 dqleeelrslrQgtesvreYverfkt 72 ++l+++l +l+Q+ ++r+Y++ +++ T039039_3 232 HRLHQHLDHLNQHLHHLRQYLHHLHH 257 57888999999999999999887765 PP == domain 2 score: 3.9 bits; conditional E-value: 0.038 Retrotrans_gag 44 erkdqleeelrslrQgtesvreYverfktladqldeevlt 83 ++ ++l+++l +l Q+ +++eY + +++ ++ l+++ l+ T039039_3 285 QHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLH 324 6778899999999999999999999998887777766555 PP == domain 3 score: 1.3 bits; conditional E-value: 0.24 Retrotrans_gag 45 rkdqleeelrslrQgtesvreYverfktlad 75 + ++l+++l +l Q+ ++++Y+ + +++ T039039_3 314 NLHHLHQHLLHLHQHLHHLHQYLLHLLQYLL 344 5568899999999999999999887766655 PP == domain 4 score: 4.6 bits; conditional E-value: 0.022 Retrotrans_gag 47 dqleeelrslrQgtesvreYverfktlad 75 ++l+++l +l+Q+ ++++Y++r+++ ++ T039039_3 351 HHLHQHLLHLQQHLLHLHQYLHRLHQHLH 379 57899******************988665 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.1 0.053 86 59 88 .. 229 258 .. 224 267 .. 0.49 2 ? 5.0 3.7 0.013 22 6 109 .. 274 377 .. 270 382 .. 0.81 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.053 CENP-F_leu_zip 59 eeieelaeelreleldLvalrsekeeLeke 88 +++++l ++l +l++ L +lr+ +L+ + T039039_3 229 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHH 258 444444444444444444444444444333 PP == domain 2 score: 5.0 bits; conditional E-value: 0.013 CENP-F_leu_zip 6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe 100 lh+ + L ++ +L+++ + L + l + e ++ + + + l++++++l + l +l + L +l + +L+++l + q+ L T039039_3 274 LHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLH 368 67778888888888899999999999999999999999999999999999999999999999999999999999999999998888888887777 PP CENP-F_leu_zip 101 slnsslenl 109 + l++ T039039_3 369 QYLHRLHQH 377 766665555 PP >> Serine_rich Serine rich protein interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 4.9 0.0082 13 33 103 .. 236 301 .. 224 306 .. 0.51 2 ? 5.1 12.1 0.012 19 11 103 .. 281 378 .. 272 382 .. 0.59 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0082 Serine_rich 33 RsrenleanlqeirlavdrlraslrefleFargalanaaklsdknlqtkLrkqlqkledseqilqetsqaL 103 ++ ++l+++l+++r+ +++l+ l+++ ++ + + +l+++L ++ q l+ +q l + +q+L T039039_3 236 QHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLL-----HLHQHLYHLHQHLHHLHQHLLHLHQHL 301 334455555555555555555555555555555555555.....555555555555555555555555544 PP == domain 2 score: 5.1 bits; conditional E-value: 0.012 Serine_rich 11 arlqqevesavs...kLlsfvsskWRsrenleanlqeirlavdrlraslrefleFargalanaaklsd..knlqtkLrkqlqkledseqilqetsqaL 103 ++l q++++ + +L++++++ +++l++nl+++++++ +l++ l+++ ++ l +l++ ++l+++L ++ q l +q l++ +q+L T039039_3 281 YHLHQHLHHLHQhllHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQplHHLHQHLLHLQQHLLHLHQYLHRLHQHL 378 33333333333300033333343344466677777777777777777777777777777777777777666777777777777777777777777666 PP >> Snapin_Pallidin Snapin/Pallidin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 4.0 0.0031 5.1 9 89 .] 225 305 .. 222 306 .. 0.85 2 ? 5.1 6.7 0.018 29 18 89 .] 311 382 .. 308 382 .. 0.92 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0031 Snapin_Pallidin 9 ellepkldeldeklkelrqsQeeLleqidrlneeLkelseaqeevlpdlkeyakKLvnikkrmsslnerlqklqkRaekLq 89 +l+ l++l+++l l q+ +L++ ++ l++ L++l + + +dl + ++ L + ++++ l++ l +l++ + +L+ T039039_3 225 LVLHQNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLH 305 578888999999999999999999999999999999999988856778889999999999999999999999999888875 PP == domain 2 score: 5.1 bits; conditional E-value: 0.018 Snapin_Pallidin 18 ldeklkelrqsQeeLleqidrlneeLkelseaqeevlpdlkeyakKLvnikkrmsslnerlqklqkRaekLq 89 l+++l+ l q+ +L+++++ l++ L +l + + + l++ ++ L +++++ l++ l++l++ + +Lq T039039_3 311 LHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHLQ 382 6789999999999*************9999988889999***************************999986 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 7.1 0.0074 12 192 324 .. 234 373 .. 225 411 .. 0.39 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0074 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHSTTS--SGGGS.....SSSSHHHHHHHHHHHHHHHHTT-..-HHHHHHHHHHHH CS EzrA 192 akeilkkleeeideleevieeiPelleelkkelpkqleelkegykkmkeegYaleel.....niekeieelekkieeilerlkel..eledaeeelktie 284 +++l+ l++++++l+++++++ l+ l + l ++l + ++ + + +l +l ++ + +++l++ +++ ++l+ l +l + ++ l++++ T039039_3 234 LHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLhqhllHLHQHLHHLHEYPHHLHQNLHHLhqHLLHLHQHLHHLH 333 2333333333333333333333333333333333333333333333333333333321111122333333333333333333333212333333333333 PP HHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHT CS EzrA 285 eeidsLyddlekEveAkkeveknlkelkeklehlekqnke 324 +++ +L + l + + ++ +++l l+++l hl + ++ T039039_3 334 QYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHR 373 3333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 812 (0.0497976); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 89 (0.00545811); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.63 # Mc/sec: 3251.36 // Query: T051361_1 [L=4371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.38s 00:00:01.81 Elapsed: 00:00:00.68 # Mc/sec: 18389.25 // Query: T051361_2 [L=4370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.43s 00:00:01.88 Elapsed: 00:00:00.81 # Mc/sec: 15434.35 // Query: T051361_3 [L=4370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.45s 00:00:01.99 Elapsed: 00:00:00.80 # Mc/sec: 15627.28 // Query: T112512_1 [L=2510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.77 # Mc/sec: 9325.56 // Query: T112512_2 [L=2510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.66 # Mc/sec: 10879.82 // Query: T112512_3 [L=2510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-08 34.1 0.0 4.1e-08 33.3 0.0 1.3 1 rve Integrase core domain 5.5e-08 32.4 0.0 9.3e-08 31.7 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 0.0 5e-12 4.1e-08 17 117 .. 866 959 .. 860 961 .. 0.82 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 5e-12 rve 17 ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 +p+++g+ ++l+ id++ r++ +++ t+++++e+ + p + sD+g+ +t+k++ +++ +gi++s++ p++p+ G++E n++ k T112512_3 866 LPSWKGQRFVLTEIDTYCRYACN-----ASAKTTICGVMECLIHCHSI--PYSIASDQGTPFTAKEVWQWAHAHGIHLSYHVPHHPEAAGLIEEWNGLSK 958 45666667777777777665543.....33456699999988888888..9*********************************************9987 PP rve 117 d 117 T112512_3 959 S 959 6 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.0 1.1e-11 9.3e-08 8 110 .. 1030 1132 .. 1024 1151 .. 0.89 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 1.1e-11 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBE CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifaril 105 + + s+g+++ + ++++ get+++p++ ++ p g+ + +lp+S a+kg++v++g+id y+ +++ l n +k++ ++gd + +L+ ++ T112512_3 1030 PMTLHSVGLEVLIPVGIMLPSGETTTIPLNWKLRFPPGHFGPLLPSSPQAKKGVTVLTGLIDLNYQDAISLLLHNGGKEEYVWNTGDPLGHLLTLPCP 1127 566678999999999******************************************************************************99997 PP CGEEE CS dUTPase 106 taele 110 ++++ T112512_3 1128 VIKVN 1132 76655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.76 # Mc/sec: 9448.27 // Query: T276196_1 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.74 # Mc/sec: 5551.56 // Query: T276196_2 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 6041.40 // Query: T276196_3 [L=1435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 5623.69 // Query: T185654_1 [L=605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 3036.49 // Query: T185654_2 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 2658.37 // Query: T185654_3 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3085.61 // Query: T032083_1 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.69 # Mc/sec: 3354.22 // Query: T032083_2 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.68 # Mc/sec: 3403.55 // Query: T032083_3 [L=808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 3255.71 // Query: T018765_1 [L=5971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-16 60.1 7.5 4.1e-16 59.2 7.5 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 7.5 2.5e-20 4.1e-16 3 69 .. 180 245 .. 179 247 .. 0.93 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 2.5e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018765_1 180 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 245 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.16u 0.45s 00:00:02.61 Elapsed: 00:00:00.93 # Mc/sec: 18367.76 // Query: T018765_2 [L=5970] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0001 21.7 0.0 0.00015 21.1 0.0 1.1 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 9.5e-09 0.00015 133 175 .. 1413 1455 .. 1410 1464 .. 0.89 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 9.5e-09 BAR_3_WASP_bdg 133 letleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018765_2 1413 MDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 1455 7889999******************************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5970 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.90u 0.40s 00:00:02.29 Elapsed: 00:00:00.77 # Mc/sec: 22180.72 // Query: T018765_3 [L=5970] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-09 35.2 0.3 1.4e-08 34.4 0.3 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 7.7e-09 35.8 0.0 1.3e-08 35.1 0.0 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.4 0.3 1.7e-12 1.4e-08 185 228 .. 1464 1507 .. 1449 1513 .. 0.93 Alignments for each domain: == domain 1 score: 34.4 bits; conditional E-value: 1.7e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018765_3 1464 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 1507 679**************************************998 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.1 0.0 1.5e-12 1.3e-08 64 107 .. 239 281 .. 235 283 .. 0.95 Alignments for each domain: == domain 1 score: 35.1 bits; conditional E-value: 1.5e-12 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018765_3 239 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 281 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5970 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.87u 0.37s 00:00:02.24 Elapsed: 00:00:00.93 # Mc/sec: 18364.68 // Query: T035300_1 [L=705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.73 # Mc/sec: 2762.86 // Query: T035300_2 [L=705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.18 11.8 0.0 0.3 11.1 0.0 1.3 1 Acetone_carb_G Acetone carboxylase gamma subunit Domain annotation for each model (and alignments): >> Acetone_carb_G Acetone carboxylase gamma subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 1.9e-05 0.3 10 61 .. 361 409 .. 353 423 .. 0.76 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.9e-05 Acetone_carb_G 10 plgeklyivqkkeeerwvvkvecghefgdarenyKlkalvyvRdteekleei 61 pl + + +k++ ++w +++ c ++++r+ + l +++ ++ l+++ T035300_2 361 PLIS---LWKKRKPNKWFCRCYCSPGLIQWRRGWSLLQSITHSASTCFLKKL 409 5544...56788889*******************999999877776666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.77 # Mc/sec: 2619.33 // Query: T035300_3 [L=704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 3248.43 // Query: T051857_1 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-42 143.1 253.2 5.3e-12 45.6 5.6 26.1 24 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.5 0.00023 3.8 4 24 .. 146 166 .. 145 173 .. 0.88 2 ? 0.5 2.0 0.041 6.7e+02 1 25 [. 196 219 .. 196 226 .. 0.80 3 ? -1.0 0.1 0.12 1.9e+03 38 47 .. 308 317 .. 307 319 .. 0.74 4 ! 5.4 0.0 0.0012 19 7 34 .. 320 346 .. 315 349 .. 0.91 5 ! 36.4 6.3 2.5e-13 4e-09 1 49 [. 346 393 .. 346 394 .. 0.97 6 ! 20.8 6.2 1.9e-08 0.0003 1 34 [. 399 431 .. 399 441 .. 0.86 7 ! 15.2 2.7 1e-06 0.017 1 37 [. 442 477 .. 442 484 .. 0.90 8 ! 45.6 5.6 3.3e-16 5.3e-12 1 50 [] 486 534 .. 486 534 .. 0.99 9 ! 24.4 0.2 1.4e-09 2.3e-05 28 50 .] 533 555 .. 531 555 .. 0.96 10 ? -1.4 0.3 0.16 2.6e+03 26 36 .. 559 569 .. 556 594 .. 0.60 11 ! 14.5 3.9 1.7e-06 0.027 1 36 [. 614 659 .. 614 661 .. 0.97 12 ! 2.5 1.9 0.0097 1.6e+02 23 39 .. 658 674 .. 657 678 .. 0.83 13 ! 15.8 7.4 6.8e-07 0.011 2 46 .. 732 778 .. 722 780 .. 0.90 14 ! 4.0 6.7 0.0032 53 5 26 .. 795 815 .. 792 815 .. 0.95 15 ! 16.0 1.9 5.8e-07 0.0095 14 36 .. 826 848 .. 818 853 .. 0.88 16 ! 2.9 0.3 0.0071 1.2e+02 27 39 .. 851 863 .. 849 868 .. 0.85 17 ? 1.2 1.8 0.024 4e+02 1 22 [. 858 879 .. 858 893 .. 0.70 18 ! 4.7 5.4 0.002 33 1 36 [. 900 935 .. 900 935 .. 0.90 19 ! 16.3 0.9 4.7e-07 0.0076 1 26 [. 933 957 .. 933 959 .. 0.95 20 ? -5.7 14.6 1 1.6e+04 1 47 [. 966 1041 .. 966 1042 .. 0.80 21 ! 6.4 0.8 0.00057 9.3 2 16 .. 1062 1075 .. 1062 1081 .. 0.76 22 ! 10.6 0.7 2.9e-05 0.48 1 15 [. 1082 1095 .. 1082 1114 .. 0.78 23 ! 15.4 11.3 9.2e-07 0.015 2 38 .. 1115 1163 .. 1115 1165 .. 0.96 24 ! 6.4 20.5 0.00058 9.4 1 39 [. 1159 1243 .. 1159 1258 .. 0.95 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T051857_1 146 APTSRQPLQAQNFLQSASTDQ 166 9********999999987655 PP == domain 2 score: 0.5 bits; conditional E-value: 0.041 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051857_1 196 TGTAPSLQWPL*tQ---LLPPSLLSRP 219 799*******9744...7777766666 PP == domain 3 score: -1.0 bits; conditional E-value: 0.12 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051857_1 308 LPPGSLSRPR 317 5788888884 PP == domain 4 score: 5.4 bits; conditional E-value: 0.0012 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +pLq + + ++gl rp+ ++As T051857_1 320 SSQPLQ-TKIMTHNGLFRPIPYVTAAST 346 789***.*************99999996 PP == domain 5 score: 36.4 bits; conditional E-value: 2.5e-13 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 ++ A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T051857_1 346 TDEATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 393 67899*******.************************************ PP == domain 6 score: 20.8 bits; conditional E-value: 1.9e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpA asr+pLq +++l++s++ +ps L+v ++ T051857_1 399 PGPASASRQPLQ-SQRLPHSRFFTPSIYLTVDPP 431 9***********.*****************9554 PP == domain 7 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpk 37 + pAPa ++pL ++ + glsrp ++L ++++G+ T051857_1 442 THPAPATQWPL*A--KLMLHKGLSRPNFCLMATFPGQI 477 57*******9996..6********************85 PP == domain 8 score: 45.6 bits; conditional E-value: 3.3e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++pL+ +++++ gls+p +++ +s+Gpkl ++ Ls+P +CL T051857_1 486 TGPGLASHWPLY-IQLMPHGGLSTPNSCPRTSSPGPKLTQVRLSSPNYCL 534 8***********.************************************9 PP == domain 9 score: 24.4 bits; conditional E-value: 1.4e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T051857_1 533 CLLVAYEGPKSPQVDLSRPSSCL 555 9*********************9 PP == domain 10 score: -1.4 bits; conditional E-value: 0.16 DUF4705 26 saqLpvAsaGp 36 s +++ As+G T051857_1 559 STGPTSASWGL 569 55555555553 PP == domain 11 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGp 36 Pgp asr++ qa p s + +srps++L +A +G+ T051857_1 614 PGPPSASRWHQQAql*lenslcrPCSCLPGAFSRPSSCLMAAAPGQ 659 9999****************************************98 PP == domain 12 score: 2.5 bits; conditional E-value: 0.0097 DUF4705 23 srpsaqLpvAsaGpklp 39 ++ sa+Lp+As G +p T051857_1 658 GQISACLPAASTGTAPP 674 5669*********8876 PP == domain 13 score: 15.8 bits; conditional E-value: 6.8e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrps.aqLpvAsaGpkl..ppagLsrP 46 +p +s ++ q + +l+ +lsrps ++LpvAs Gp pp+gL +P T051857_1 732 DPDGVSLWHPQ-AKLLPFGSLSRPSsSCLPVASFGPAQlmPPGGLPKP 778 5666889999*.************737*********9889*****999 PP == domain 14 score: 4.0 bits; conditional E-value: 0.0032 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp q ++ l++sgls+ps T051857_1 795 PASRRPAQ-AQPLPHSGLSTPS 815 9*******.************7 PP == domain 15 score: 16.0 bits; conditional E-value: 5.8e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T051857_1 826 PKLLPLGRFGRPSSRLPVASSGP 848 999*******************9 PP == domain 16 score: 2.9 bits; conditional E-value: 0.0071 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T051857_1 851 SFLTTAFPGPVFP 863 79*********97 PP == domain 17 score: 1.2 bits; conditional E-value: 0.024 DUF4705 1 PgpAPasrrpLqapaslqasgl 22 Pgp +rrpL+a ++l++ ++ T051857_1 858 PGPVFPFRRPLRAQNLLKSASP 879 7888889*****8555555543 PP == domain 18 score: 4.7 bits; conditional E-value: 0.002 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp Pas++pL ++ l+ s ++ ++ ++L ++s+Gp T051857_1 900 PGPIPASQQPLW-TQCLPISwRPWSAHSFLKPSSPGP 935 9***********.9999855488999********999 PP == domain 19 score: 16.3 bits; conditional E-value: 4.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +l++ g srp T051857_1 933 PGPGQASRWPLQ-DELLPSDGISRPQ 957 9***********.9**********97 PP == domain 20 score: -5.7 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqa.............................paslqasglsrpsaqLpvAsaGpklppagLsrPs 47 P++++asrr qa + ++sg++rp L A++ + +p +gLsr s T051857_1 966 PRQGWASRRLPQAqvvlksgspgcisrpdsgptpgpnnvfglSSCPAPSGPGRPTTSLSQAPQAQLRPRGGLSRLS 1041 7888999885576888888888888888888888888877776666799999999999999999999999999865 PP == domain 21 score: 6.4 bits; conditional E-value: 0.00057 DUF4705 2 gpAPasrrpLqapas 16 gpA+asrrp q ++ T051857_1 1062 GPAWASRRPPQ-AQI 1075 9********99.443 PP == domain 22 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 1 PgpAPasrrpLqapa 15 Pg APasrrpLqa + T051857_1 1082 PGLAPASRRPLQA-Q 1095 899*********5.3 PP == domain 23 score: 15.4 bits; conditional E-value: 9.2e-07 DUF4705 2 gpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpkl 38 gpAP srrpLq pas+++ + +ps+ L +A++Gp + T051857_1 1115 GPAPSSRRPLQVqnflesaspgpapPASQWPL-SAQPSSWLSAAFPGPAF 1163 9*******************************.89*************75 PP == domain 24 score: 6.4 bits; conditional E-value: 0.00058 DUF4705 1 PgpAPasrrpLqa..............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++r s++LpvAs Gp + T051857_1 1159 PGPAFEFWQPLQAqnlissrplqarppasrrpararprprphsglstps*lsphcglpsPKLLPFGHFGRSSSCLPVASLGPAHS 1243 99********************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.74 # Mc/sec: 5984.55 // Query: T051857_2 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-40 134.5 289.6 1.3e-06 28.3 9.1 27.7 27 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.1 0.12 1.9e+03 38 47 .. 147 156 .. 146 159 .. 0.75 2 ! 8.2 0.1 0.00015 2.5 7 35 .. 159 186 .. 155 189 .. 0.93 3 ! 21.5 5.5 1.1e-08 0.00018 3 46 .. 187 229 .. 185 231 .. 0.94 4 ! 18.9 0.6 7.4e-08 0.0012 27 48 .. 307 328 .. 292 328 .. 0.92 5 ! 7.7 4.7 0.00022 3.6 2 42 .. 336 376 .. 336 381 .. 0.90 6 ? 2.3 0.3 0.011 1.8e+02 2 20 .. 368 386 .. 368 387 .. 0.84 7 ! 28.3 9.1 8.3e-11 1.3e-06 1 42 [. 388 433 .. 388 436 .. 0.82 8 ! 19.6 6.5 4.5e-08 0.00074 5 43 .. 435 476 .. 429 479 .. 0.87 9 ! 18.4 6.7 1.1e-07 0.0017 5 40 .. 479 513 .. 478 521 .. 0.90 10 ? 2.2 1.0 0.012 1.9e+02 1 30 [. 507 531 .. 507 545 .. 0.73 11 ! 19.7 12.6 4.1e-08 0.00067 1 49 [. 549 596 .. 549 596 .. 0.99 12 ! 6.3 2.4 0.00063 10 11 32 .. 580 598 .. 575 610 .. 0.83 13 ! 13.4 1.3 3.7e-06 0.06 7 43 .. 609 644 .. 604 645 .. 0.89 14 ? 0.4 9.5 0.044 7.1e+02 1 26 [. 646 682 .. 646 683 .. 0.75 15 ! 18.4 11.4 1e-07 0.0017 3 50 .] 722 771 .. 721 771 .. 0.94 16 ! 5.6 6.8 0.001 16 14 37 .. 757 779 .. 755 781 .. 0.86 17 ! 20.5 8.9 2.4e-08 0.00039 1 36 [. 776 814 .. 776 830 .. 0.86 18 ! 11.9 10.3 1.1e-05 0.18 2 49 .. 836 894 .. 835 895 .. 0.85 19 ! 9.5 13.8 6.3e-05 1 13 42 .. 931 962 .. 869 967 .. 0.74 20 ? 1.6 0.3 0.019 3.1e+02 28 50 .] 985 1005 .. 983 1005 .. 0.84 21 ! 10.2 7.4 3.7e-05 0.6 17 50 .] 1000 1033 .. 991 1033 .. 0.87 22 ! 3.1 7.0 0.0063 1e+02 21 49 .. 1037 1076 .. 1032 1077 .. 0.81 23 ? -2.7 5.0 0.4 6.4e+03 18 36 .. 1094 1113 .. 1078 1129 .. 0.57 24 ? -2.2 7.9 0.27 4.5e+03 7 26 .. 1130 1149 .. 1129 1184 .. 0.61 25 ? -1.6 7.4 0.19 3.1e+03 1 39 [. 1148 1209 .. 1148 1226 .. 0.77 26 ! 17.1 6.4 2.7e-07 0.0043 2 36 .. 1228 1261 .. 1227 1267 .. 0.91 27 ? -2.5 0.4 0.35 5.8e+03 5 22 .. 1402 1418 .. 1400 1423 .. 0.67 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.12 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051857_2 147 LPPGSLSRPR 156 5788888884 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00015 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaG 35 s +pLq + ++ ++gl rp+ ++Asa+ T051857_2 159 SSQPLQ-TKLMTHNGLFRPIPYVTAASAD 186 689***.********************97 PP == domain 3 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 A as++p q +++ + +gl rps++Lp+ s+Gp+ ++++L P T051857_2 187 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPEHSQVSLCCP 229 689*******.******************************887 PP == domain 4 score: 18.9 bits; conditional E-value: 7.4e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rP+s T051857_2 307 SYLPAASPGPELSPVSLYRPRS 328 67******************98 PP == domain 5 score: 7.7 bits; conditional E-value: 0.00022 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051857_2 336 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 376 788********.***********************9976555 PP == domain 6 score: 2.3 bits; conditional E-value: 0.011 DUF4705 2 gpAPasrrpLqapaslqas 20 +pAPas+ Lqa + l+++ T051857_2 368 DPAPASQPSLQALNFLKST 386 6**********98887776 PP == domain 7 score: 28.3 bits; conditional E-value: 8.3e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppag 42 PgpAPas++pLq ++ l++++l +p ++L++ s p p+a+ T051857_2 388 PGPAPASWWPLQ-AQPLPPVSLYSPNVCLTADSSRPAStslwtPQAK 433 9***********.*****************97665554455556665 PP == domain 8 score: 19.6 bits; conditional E-value: 4.5e-08 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagL 43 P++++ L+ +++l++sgl rps++ + A++Gp++ p +++ T051857_2 435 PTFQQLLH-TQLLPPSGLFRPSSCFTRAFPGPTFvswqPSLAR 476 899*****.***********************99766655555 PP == domain 9 score: 18.4 bits; conditional E-value: 1.1e-07 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 P+s++p q ++ l+++gls+ s++L+vAs+ p++ p T051857_2 479 PVSQQPRQ-AQVLPHTGLSTSSLCLTVASPRPTPVP 513 9*******.*********************999854 PP == domain 10 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 P+p P+ r+L+a ++l++ + + ++ T051857_2 507 PRPTPVPGRHLRAQNLLKSDS-----LVPT 531 899*********866666663.....3333 PP == domain 11 score: 19.7 bits; conditional E-value: 4.1e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srp + + + + lp +L+ PssC T051857_2 549 PGPAPASCQRLQ-AQPLPHGGFSRPTSSSWLGLQAQLLPHNSLFWPSSC 596 9***********.************************************ PP == domain 12 score: 6.3 bits; conditional E-value: 0.00063 DUF4705 11 LqapaslqasglsrpsaqLpvA 32 Lq +++l++++l +ps+++ A T051857_2 580 LQ-AQLLPHNSLFWPSSCP--A 598 99.***************8..4 PP == domain 13 score: 13.4 bits; conditional E-value: 3.7e-06 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 s + Lq + +l + g rps+ L AsaGp l gL T051857_2 609 SSQTLQ-AHLLLPGGINRPSFDLRTASAGPALASQGL 644 5688**.***********************9955555 PP == domain 14 score: 0.4 bits; conditional E-value: 0.044 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrps 26 PgpA as++ qa +++l++sg+ rp T051857_2 646 PGPALASWQLPQAkflpacqqpqqAQLLPHSGPFRPN 682 7888888885566788777777779999999999986 PP == domain 15 score: 18.4 bits; conditional E-value: 1e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLs.rPssCL 50 +A as++ Lq ++ ++ g r s++L +As+Gp + ++ Ls +PssCL T051857_2 722 SASASQWTLQ-TQMVSHCGILRRSSCLLAASPGPAPpaSQWPLSaQPSSCL 771 689*******.*************************8889999857****8 PP == domain 16 score: 5.6 bits; conditional E-value: 0.001 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 pas+++ + +ps++Lp+A++ p T051857_2 757 PASQWPL-SAQPSSCLPAAFPSPA 779 7888888.789*********9986 PP == domain 17 score: 20.5 bits; conditional E-value: 2.4e-08 DUF4705 1 PgpAPasrrpLqa...paslqasglsrpsaqLpvAsaGp 36 P pA +r+pLqa p +l++ gl+rps++L++ s+ p T051857_2 776 PSPAFDFRWPLQAstrPSLLPPEGLHRPSLCLTADSPRP 814 789999***************************977655 PP == domain 18 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gls p+ + +s++ + pp Ls Pss+ T051857_2 836 GPAPACQWPLQAhgahs*qrpfqAQFFPSGGLSGPR---TSSSRPLQThlhPPCILSGPSSS 894 9**********************9999999999998...45666666667788888888876 PP == domain 19 score: 9.5 bits; conditional E-value: 6.3e-05 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+As+Gpk +p+g T051857_2 931 ApqAQVRPHGGLSRMSSCPPMASPGPKWSPVG 962 24466679********************9986 PP == domain 20 score: 1.6 bits; conditional E-value: 0.019 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 Lp+As+G +l a L P+ +L T051857_2 985 ALPAASPGRTL--ARLQVPTTSL 1005 59*******99..7888888776 PP == domain 21 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 17 lqasglsrpsaqLpvAsaGpklpp.agLsrPssCL 50 + ++l +++aqLp+A +Gp+l p a+L rPss L T051857_2 1000 VPTTSLDSAPAQLPAALVGPQL-P*AKLPRPSSGL 1033 57899*****************.8889*****987 PP == domain 22 score: 3.1 bits; conditional E-value: 0.0063 DUF4705 21 glsrpsaqLpvAsaGpkl............ppagLsrPssC 49 ++++++ ++p++saGpk pp+gL+rP+s+ T051857_2 1037 SPGSAP-GPPMTSAGPKWppvggll*aqlgPPGGLRRPKSS 1076 555555.79*********88888888888888999999886 PP == domain 23 score: -2.7 bits; conditional E-value: 0.4 DUF4705 18 qasglsrpsaqLp.vAsaGp 36 + s++srp+++++ +As++p T051857_2 1094 PKSSSSRPGSGPGrAASRPP 1113 45666666666653344444 PP == domain 24 score: -2.2 bits; conditional E-value: 0.27 DUF4705 7 srrpLqapaslqasglsrps 26 s +pLqa +l++sgl rps T051857_2 1130 SSQPLQAQLLLPPSGLFRPS 1149 67999974455666666665 PP == domain 25 score: -1.6 bits; conditional E-value: 0.19 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpkl..p 39 P pA srrp qa p +l+ gl+ p+++L+++ p + + T051857_2 1148 PSPAHGSRRPSQApllsfgslfrrrt*spvglcrPGLLPLEGLHGPGLGLGLTADSPRPasS 1209 67888899999999999999999999999999999999999999999988888777776333 PP == domain 26 score: 17.1 bits; conditional E-value: 2.7e-07 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++g srp++ Lp+As++ T051857_2 1228 GPAPACQWPL*aQ---LIPHVGHSRPRFSLPAASWPL 1261 9********9966...******************986 PP == domain 27 score: -2.5 bits; conditional E-value: 0.35 DUF4705 5 PasrrpLqapaslqasgl 22 P+ + pL+ ++s ++s++ T051857_2 1402 PVAQGPLH-TPSCSPSRS 1418 67777888.666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.74 # Mc/sec: 5980.68 // Query: T051857_3 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-67 222.3 273.7 1.1e-13 51.0 13.7 28.5 24 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.9 2.6e-08 0.00042 27 48 .. 146 167 .. 131 167 .. 0.92 2 ! 7.2 5.2 0.00033 5.4 2 42 .. 175 215 .. 175 220 .. 0.90 3 ! 2.8 0.9 0.0075 1.2e+02 2 32 .. 207 242 .. 207 252 .. 0.66 4 ! 8.2 0.5 0.00016 2.6 4 21 .. 306 323 .. 305 346 .. 0.81 5 ? -0.3 2.7 0.07 1.1e+03 1 25 [. 356 379 .. 356 379 .. 0.75 6 ! 9.9 4.9 4.5e-05 0.74 7 36 .. 383 411 .. 381 413 .. 0.90 7 ! 15.9 2.0 6.3e-07 0.01 3 36 .. 411 454 .. 409 456 .. 0.93 8 ! 6.6 6.3 0.00049 7.9 2 33 .. 453 495 .. 452 496 .. 0.73 9 ! 25.4 2.8 6.8e-10 1.1e-05 3 50 .] 498 586 .. 497 586 .. 0.98 10 ! 24.0 0.3 1.8e-09 2.9e-05 22 49 .. 591 618 .. 587 619 .. 0.93 11 ! 7.2 0.2 0.00032 5.2 22 38 .. 612 628 .. 612 629 .. 0.92 12 ! 8.2 9.8 0.00016 2.6 8 50 .] 631 695 .. 622 695 .. 0.82 13 ! 13.5 0.5 3.6e-06 0.059 16 35 .. 723 742 .. 716 743 .. 0.92 14 ? 2.1 16.7 0.013 2.1e+02 2 26 .. 742 766 .. 741 796 .. 0.55 15 ! 22.4 25.5 6e-09 9.8e-05 1 50 [] 801 884 .. 801 884 .. 0.94 16 ! 4.0 0.6 0.0033 53 33 50 .] 888 905 .. 883 905 .. 0.90 17 ! 12.3 7.7 8.1e-06 0.13 14 50 .] 901 938 .. 889 938 .. 0.79 18 ! 48.4 5.1 4.3e-17 7e-13 4 45 .. 946 987 .. 946 990 .. 0.98 19 ! 51.0 13.7 6.8e-18 1.1e-13 1 50 [] 1027 1087 .. 1027 1087 .. 0.99 20 ! 15.4 1.8 8.7e-07 0.014 21 44 .. 1079 1102 .. 1079 1103 .. 0.93 21 ! 16.1 6.6 5.4e-07 0.0088 18 49 .. 1108 1139 .. 1107 1140 .. 0.95 22 ! 4.6 2.1 0.002 33 26 46 .. 1138 1160 .. 1138 1162 .. 0.84 23 ? -2.9 5.0 0.48 7.9e+03 1 13 [. 1193 1205 .. 1172 1217 .. 0.59 24 ! 9.7 14.0 5.4e-05 0.87 8 39 .. 1200 1253 .. 1191 1260 .. 0.72 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 2.6e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rPss T051857_3 146 SYLPAASPGPELSPVSLYRPSS 167 67******************98 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00033 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051857_3 175 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 215 788********.***********************9976555 PP == domain 3 score: 2.8 bits; conditional E-value: 0.0075 DUF4705 2 gpAPasrrpLqa.....paslqasglsrpsaqLpvA 32 +pAPas+ Lqa ++s + + +qL++A T051857_3 207 DPAPASQPSLQAlnilrSPSVVQGWSVVVLSQLTAA 242 6**********9666664444333333444555555 PP == domain 4 score: 8.2 bits; conditional E-value: 0.00016 DUF4705 4 APasrrpLqapaslqasg 21 AP+sr+pLqa + lq+ + T051857_3 306 APTSRQPLQAQNFLQSAS 323 9********977777765 PP == domain 5 score: -0.3 bits; conditional E-value: 0.07 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051857_3 356 TGTAPSLQWPL*tQ---LLPPSLLSRP 379 799*******9744...6776666665 PP == domain 6 score: 9.9 bits; conditional E-value: 4.5e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q +++l g+srps++Lp As p T051857_3 383 SSRPHQ-AQLLHLGGPSRPSLCLPSASTVP 411 679999.*******************9755 PP == domain 7 score: 15.9 bits; conditional E-value: 6.3e-07 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGp 36 p as++ L+a p s++ s++ +ps++ pvAs G+ T051857_3 411 PTSASQQILHAqhlphcgppkPSSQPFSSFYTPSSCHPVASLGQ 454 55699************************************998 PP == domain 8 score: 6.6 bits; conditional E-value: 0.00049 DUF4705 2 gpAPasrrpLqa..........pas.lqasglsrpsaqLpvAs 33 g+A as+ p qa p+s l++s+l rp+++L++As T051857_3 453 GQAHASQGPFQAqllshgnlpwPDScLSPSSLDRPRSCLTLAS 495 8999*******77777777777554467777777777777776 PP == domain 9 score: 25.4 bits; conditional E-value: 6.8e-10 DUF4705 3 pAPasrrpLqa.........................................paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 pA asr+pL+a +++l++++ rp ++L As++p lp + r +CL T051857_3 498 PAYASRWPLHAqllsqdvisgpktyssqtl*sqllppggl*rpkisss*pvqAQLLPPVSVYRPNLCLMGASPDPPLPLGWVYRHNCCL 586 9*****************************************************************************99999999997 PP == domain 10 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssC 49 ++ ++qL +A +Gpklp+++LsrP+ C T051857_3 591 FGPVPVQLMAANVGPKLPQVKLSRPTFC 618 67789*********************99 PP == domain 11 score: 7.2 bits; conditional E-value: 0.00032 DUF4705 22 lsrpsaqLpvAsaGpkl 38 lsrp ++ pvAs Gp l T051857_3 612 LSRPTFCFPVASTGPAL 628 69*************76 PP == domain 12 score: 8.2 bits; conditional E-value: 0.00016 DUF4705 8 rrpLqa.....................pas.lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++pLqa p+ l+as+l r s+ L+vA Gp+ ++srPs CL T051857_3 631 EQPLQAlllpprgffqaqllphgscprPNFcLPASSLNRHSSSLTVAHLGPTHDCEAISRPSACL 695 69999999999999998888888888866448899999999999999999999888899999998 PP == domain 13 score: 13.5 bits; conditional E-value: 3.6e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T051857_3 723 PLPHSGPSRPRWCLTVASSG 742 69****************98 PP == domain 14 score: 2.1 bits; conditional E-value: 0.013 DUF4705 2 gpAPasrrpLqapaslqasglsrps 26 g APa+++pLqa +l++sgl rps T051857_3 742 GEAPAFWQPLQAQLLLPPSGLFRPS 766 89*********84455666666655 PP == domain 15 score: 22.4 bits; conditional E-value: 6e-09 DUF4705 1 PgpAPasrrpLqa.................................pasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p l + +glsrps+ Lp+As+Gp++p++gLsrP++ L T051857_3 801 TGPASASQRTLHAqlavaslrppeskapasrplrqaqlppasglfrPMGLiPDNGLSRPSFSLPAASPGPEPPQVGLSRPTCTL 884 8*********************************************76553789**************************9976 PP == domain 16 score: 4.0 bits; conditional E-value: 0.0033 DUF4705 33 saGpklppagLsrPssCL 50 s+Gp l p+ srP sCL T051857_3 888 SPGPALLPGWVSRPDSCL 905 89****99*********9 PP == domain 17 score: 12.3 bits; conditional E-value: 8.1e-06 DUF4705 14 pas.lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 p+s l+ ++l + + L +A +Gp+lp+a+L rP+s L T051857_3 901 PDScLSTTSLDSVPTHLLAALVGPQLPQAKLPRPRSGL 938 5543788999999***********************87 PP == domain 18 score: 48.4 bits; conditional E-value: 4.3e-17 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 APa+r++Lqap+ l+++g+s+p+++Lp++ aGp++p++gLsr T051857_3 946 APALRWHLQAPNGLRSVGSSTPRLGLPATAAGPSCPEVGLSR 987 9****************************************8 PP == domain 19 score: 51.0 bits; conditional E-value: 6.8e-18 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA asr+pLqa p+ l+++g+srps++Lp+AsaGp++p+++Lsr ss+L T051857_3 1027 PGPAQASRWPLQAqllalr*hlqaPNGLRSVGSSRPSLGLPAASAGPNRPEVSLSRLSSSL 1087 9**********************************************************98 PP == domain 20 score: 15.4 bits; conditional E-value: 8.7e-07 DUF4705 21 glsrpsaqLpvAsaGpklppagLs 44 +lsr s+ Lp+AsaGp++p++gL+ T051857_3 1079 SLSRLSSSLPAASAGPSRPQVGLE 1102 58999*****************96 PP == domain 21 score: 16.1 bits; conditional E-value: 5.4e-07 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssC 49 q++gl ps+ L As+G klp ++LsrPss+ T051857_3 1108 QQVGLPGPSSVLSTASPGAKLPRVSLSRPSSS 1139 6889999***********************97 PP == domain 22 score: 4.6 bits; conditional E-value: 0.002 DUF4705 26 saqLpvAsaGpkl..ppagLsrP 46 s++LpvAs Gp +gL rP T051857_3 1138 SSCLPVASFGPAQlmALGGLPRP 1160 79*********877778888888 PP == domain 23 score: -2.9 bits; conditional E-value: 0.48 DUF4705 1 PgpAPasrrpLqa 13 P +A as+r L+a T051857_3 1193 PASASASQRTLHA 1205 3345556666663 PP == domain 24 score: 9.7 bits; conditional E-value: 5.4e-05 DUF4705 8 rrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +r L+a ++l+asgl rps++L+ A +Gp++p T051857_3 1200 QRTLHAqlalaslrppqskapafrplrqVQLLPASGLFRPSSFLTSAIPGPVFP 1253 5555555555555555555555555555************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.68 # Mc/sec: 6508.39 // Query: T110815_1 [L=1088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 4788.59 // Query: T110815_2 [L=1088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 4383.92 // Query: T110815_3 [L=1088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 4716.03 // Query: T275349_1 [L=910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2262 (0.138722); expected 326.1 (0.02) Passed bias filter: 706 (0.0432969); expected 326.1 (0.02) Passed Vit filter: 495 (0.0303569); expected 16.3 (0.001) Passed Fwd filter: 135 (0.00827916); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.29u 0.51s 00:00:03.80 Elapsed: 00:00:01.00 # Mc/sec: 2603.36 // Query: T275349_2 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1963 (0.120385); expected 326.1 (0.02) Passed bias filter: 585 (0.0358764); expected 326.1 (0.02) Passed Vit filter: 347 (0.0212805); expected 16.3 (0.001) Passed Fwd filter: 92 (0.00564209); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.24u 0.51s 00:00:02.75 Elapsed: 00:00:00.98 # Mc/sec: 2653.57 // Query: T275349_3 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2040 (0.125107); expected 326.1 (0.02) Passed bias filter: 627 (0.0384521); expected 326.1 (0.02) Passed Vit filter: 400 (0.0245308); expected 16.3 (0.001) Passed Fwd filter: 82 (0.00502882); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.49s 00:00:02.65 Elapsed: 00:00:00.74 # Mc/sec: 3514.18 // Query: T316834_1 [L=7654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.44s 00:00:02.73 Elapsed: 00:00:00.86 # Mc/sec: 25461.39 // Query: T316834_2 [L=7654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 506 (0.0310315); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.45s 00:00:02.86 Elapsed: 00:00:00.98 # Mc/sec: 22343.67 // Query: T316834_3 [L=7653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.49s 00:00:02.92 Elapsed: 00:00:01.00 # Mc/sec: 21893.93 // Query: T138132_1 [L=8307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1416 (0.0868392); expected 326.1 (0.02) Passed bias filter: 383 (0.0234883); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.59u 0.50s 00:00:05.09 Elapsed: 00:00:01.17 # Mc/sec: 20311.89 // Query: T138132_2 [L=8307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1304 (0.0799706); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 122 (0.00748191); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.33u 0.45s 00:00:03.78 Elapsed: 00:00:00.80 # Mc/sec: 29706.14 // Query: T138132_3 [L=8307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1187 (0.0727953); expected 326.1 (0.02) Passed bias filter: 283 (0.0173556); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.75u 0.47s 00:00:03.22 Elapsed: 00:00:00.79 # Mc/sec: 30082.17 // Query: T047522_1 [L=2010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.57 # Mc/sec: 9914.26 // Query: T047522_2 [L=2010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.59 # Mc/sec: 9746.22 // Query: T047522_3 [L=2010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 9914.26 // Query: T316324_1 [L=3037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 15514.89 // Query: T316324_2 [L=3037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 14013.45 // Query: T316324_3 [L=3037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.64 # Mc/sec: 13575.53 // Query: T131257_1 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.81 # Mc/sec: 8434.15 // Query: T131257_2 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 9622.06 // Query: T131257_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 8872.29 // Query: T141526_1 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.75 # Mc/sec: 6358.67 // Query: T141526_2 [L=1666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 566 (0.0347111); expected 326.1 (0.02) Passed bias filter: 303 (0.0185821); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.74 # Mc/sec: 6440.73 // Query: T141526_3 [L=1666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.68 # Mc/sec: 7009.03 // Query: T173647_1 [L=2501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.048 13.3 1.5 0.096 12.3 1.5 1.4 1 Gly-zipper_YMGG YMGG-like Gly-zipper Domain annotation for each model (and alignments): >> Gly-zipper_YMGG YMGG-like Gly-zipper # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 1.5 5.9e-06 0.096 5 27 .. 960 982 .. 959 995 .. 0.85 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.9e-06 XXXXXXXXXXXXXXXXXXXXXXX CS Gly-zipper_YMGG 5 rGAaiGAaaGAvvGaliGsgggk 27 r A+ GAaaGAv+Gal +gg+ T173647_1 960 RAAGRGAAAGAVLGALLHPHGGH 982 56999999999999999876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.65 # Mc/sec: 11007.59 // Query: T173647_2 [L=2500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.74 # Mc/sec: 9664.97 // Query: T173647_3 [L=2500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.71 # Mc/sec: 10073.35 // Query: T294831_1 [L=2003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-22 78.3 0.0 9e-22 77.7 0.0 1.2 1 RNase_H RNase H 1.3e-07 31.6 0.1 3e-07 30.5 0.1 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.0002 21.4 0.0 0.00037 20.5 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.7 0.0 1.7e-25 9e-22 5 142 .. 541 682 .. 538 683 .. 0.84 Alignments for each domain: == domain 1 score: 77.7 bits; conditional E-value: 1.7e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk 99 +Y+DGs++ n +ge++ag+ v+ + + +pl++ +++++aEL+A++ aL+ ++++vniy DS+Y++ +++ vh++ k++a +s +k++k T294831_1 541 ELYVDGSSFINpQGERCAGCaVVTLD-DVIEDKPLPHGTSAQKAELIALTRALElR--EGKTVNIYPDSRYAFLTLQ--VHGAlyKEKAL-LNSGGKDIK 634 68*********99999****777766.3466699*******************955..9**************9555..56662144444.5888899*9 PP T.HHHHHHHHHCHCSSEEEEEE-SCC..SSS...CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgH..aGd...pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv ++h++gH a ++gN + D A++aa T294831_1 635 YqQEILQLLEAVWKPQKVAVMHCRGHlqA-StsvSQGNSRTDTEAQKAA 682 889***********************752.246789**********997 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.1 5.5e-11 3e-07 1 36 [. 748 783 .. 748 784 .. 0.98 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 5.5e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCk 36 H++tHlG++ l++ll+r++++ ++ +++++V+++C+ T294831_1 748 HETTHLGQESLEKLLSRYFYISHLPALAKTVARRCT 783 9**********************************7 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 6.9e-08 0.00037 26 84 .. 821 877 .. 819 885 .. 0.89 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 6.9e-08 rve 26 llvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafr 84 ++v + ++s++i +++++e +a +v+++l r + ++g p+r+ sDng++ ++ ++ T294831_1 821 FTVLVCTYSGWIESYPTRTE-KACEVTRVLLRDLIPRFGL-PLRIGSDNGPASVADLVQ 877 67999***************.*******************.**********98876554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.78 # Mc/sec: 7346.46 // Query: T294831_2 [L=2002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-19 70.8 0.0 2.6e-19 69.5 0.0 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.5 0.0 1.6e-23 2.6e-19 1 222 [] 44 216 .. 44 216 .. 0.87 Alignments for each domain: == domain 1 score: 69.5 bits; conditional E-value: 1.6e-23 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T294831_2 44 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTAPNPYTLLGL------------LLAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 118 69*********7....7***********.........99999999999666............56899******************************66 PP .......................TEE..EEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHH...HHHHTT CS RVT_1 101 linliksflstrsfsvrvngeesegr..yekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleavee...wlkesg 195 s+ y++++lpqG+++SP++f ++ + l+++ + g+ ll+Y+DD+l+ + + + + + + +l+++g T294831_2 119 ---------------------GSGVTt*YTWTRLPQGFKNSPTIFGEALARDLQKFPAKDLGCILLQYVDDLLLGDSMADG---CAKGTDAll*HLEDCG 194 .....................34555688*********************9999999999************997666444...444444422558**** PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ +++v+yLG+t+ T294831_2 195 YKVSKKKAQIC-----RQQVRYLGFTI 216 ***********.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 9237.71 // Query: T294831_3 [L=2002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 8066.73 // Query: T221539_1 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0057 16.6 5.3 0.0057 16.6 5.3 4.7 5 CD20 CD20-like family Domain annotation for each model (and alignments): >> CD20 CD20-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.4 0.054 8.8e+02 107 152 .. 563 607 .. 560 612 .. 0.64 2 ! 16.6 5.3 3.5e-07 0.0057 60 154 .. 593 692 .. 582 694 .. 0.72 3 ? -8.0 11.3 1 1.6e+04 88 115 .. 725 759 .. 721 765 .. 0.50 4 ? -1.8 6.4 0.16 2.7e+03 91 138 .. 763 811 .. 753 820 .. 0.40 5 ? -3.1 3.9 0.41 6.6e+03 53 124 .. 868 948 .. 845 961 .. 0.47 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.054 CD20 107 rcsskesseeeesraycsslrslltgilavlliltilellvsllsa 152 c +++ + +++++ c+ + ++++ + +i+ti +++++++ T221539_1 563 HCHHHHHYHHCHHCHHCYHI-TVFITPTTPITIMTITITIITIITI 607 67788888888888888888.6666555555555555555555544 PP == domain 2 score: 16.6 bits; conditional E-value: 3.5e-07 CD20 60 vklslllnlvslvlalaGiillilslalltsaeelkesesdl..........tsstsrcsskesseeeesraycsslrslltgilavlliltilellvsl 149 +++ ++++++ +++ ++ + + +++ +++++ + + +++++c++++ +++++++ +++ +s+ t+i+++ + +t + + vs T221539_1 593 TIMTITITIITIITIITTTNTTTVTSHYHYHYDYP-N----HyhhhhyhhlhYHHHHQCQHCHHHRDHHHTISTTTTTSVSTAITITTMTITTMTTSVST 687 45555555555555444444444444444444333.1....12345678888999********************************************* PP CD20 150 lsail 154 +++i+ T221539_1 688 VITIM 692 ***98 PP == domain 3 score: -8.0 bits; conditional E-value: 1 CD20 88 ltsaeelkesesdl.......tsstsrcsskesse 115 ++++++++ + +++ +++++ c ++++++ T221539_1 725 HHHHHHHQHQHCHQhhdhnhhCHHHQHCHQHHDHN 759 34444444455555556655555555555555444 PP == domain 4 score: -1.8 bits; conditional E-value: 0.16 CD20 91 aeelkesesdl........tsstsrcsskesseeeesraycsslrslltgilavll 138 +++++ + + ++++ c ++++++ + + +++ + ++v + T221539_1 763 HHQHQHCH--QhhdhnhhhHHHHQHCHQHHDHHHDMTTTTTTT-----AATTSVST 811 33333333..233545333333333333333333333333333.....33333333 PP == domain 5 score: -3.1 bits; conditional E-value: 0.41 CD20 53 krstkllvklslllnlvslvlalaGiillilslalltsaeelkesesdl.........tsstsrcsskesseeeesraycs 124 +t+++ ++ +++++ ++ + +++ i+ + ++ s l +++++++ +++ ++++ + +s T221539_1 868 ITTTTSVNTVVTIMTITITATTSISTVINIMAITMIRLPPPPPPPVSALpsps*pspsQHHHQCQHCHHHDHDHLTITTTS 948 444444445555555555555555555555555555444444333333366666655333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1794 (0.110021); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.45s 00:00:01.66 Elapsed: 00:00:00.77 # Mc/sec: 4291.24 // Query: T221539_2 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1166 (0.0715074); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 4649.86 // Query: T221539_3 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 989 (0.0606525); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.66 # Mc/sec: 5002.12 // Query: T005641_1 [L=713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.69 # Mc/sec: 2956.19 // Query: T005641_2 [L=712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 2868.89 // Query: T005641_3 [L=712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 594 (0.0364283); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.72 # Mc/sec: 2829.04 // Query: T035601_1 [L=2813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.4 8.0 6.3 19 5.1 0.1 3.2 3 F-box-like F-box-like Domain annotation for each model (and alignments): >> F-box-like F-box-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.1 0.0011 19 11 29 .. 224 244 .. 221 245 .. 0.91 2 ? 4.8 0.3 0.0014 23 17 46 .. 1096 1125 .. 1091 1127 .. 0.87 3 ? -3.7 0.1 0.65 1.1e+04 25 32 .. 2565 2572 .. 2557 2573 .. 0.74 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0011 F-box-like 11 qIFsyLppsdLlr.l.alVCr 29 IFsyL+++ ++r l + VC+ T035601_1 224 SIFSYLNTRAWTR*LhSSVCS 244 7*************999***6 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0014 F-box-like 17 ppsdLlrlalVCrrWrrvaldtplLWrrlv 46 +ps+++r +l++r r + ++p+LW+r T035601_1 1096 HPSSWSRTRLTSRTKRGFLPRHPSLWSRTR 1125 589***********************9965 PP == domain 3 score: -3.7 bits; conditional E-value: 0.65 F-box-like 25 alVCrrWr 32 a+VC +W+ T035601_1 2565 AAVCDSWA 2572 68888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.41s 00:00:01.45 Elapsed: 00:00:00.79 # Mc/sec: 10186.73 // Query: T035601_2 [L=2812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 11658.92 // Query: T035601_3 [L=2812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.76 # Mc/sec: 10585.07 // Query: T159477_1 [L=2373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 9173.99 // Query: T159477_2 [L=2373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.78 # Mc/sec: 8703.53 // Query: T159477_3 [L=2372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.70 # Mc/sec: 9694.13 // Query: T260048_1 [L=1582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 7183.86 // Query: T260048_2 [L=1582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.57 # Mc/sec: 7803.16 // Query: T260048_3 [L=1581] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1581 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 7179.32 // Query: T148343_1 [L=507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-22 78.7 62.5 3e-14 53.1 11.7 6.9 7 LRRC37 Leucine-rich repeat-containing protein 37 family Domain annotation for each model (and alignments): >> LRRC37 Leucine-rich repeat-containing protein 37 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.1 4.7 9.7e-05 1.6 6 27 .. 1 21 [. 1 23 [. 0.85 2 ! 9.2 1.7 9e-05 1.5 1 19 [. 36 54 .. 25 61 .. 0.74 3 ! 15.1 0.2 1.2e-06 0.02 56 72 .. 234 250 .. 219 251 .. 0.86 4 ! 53.1 11.7 1.8e-18 3e-14 25 73 .] 258 306 .. 252 306 .. 0.93 5 ! 13.8 2.6 3.2e-06 0.052 45 73 .] 306 334 .. 304 334 .. 0.89 6 ! 8.0 3.5 0.00021 3.4 32 61 .. 339 368 .. 336 380 .. 0.89 7 ? -1.8 0.1 0.23 3.8e+03 26 51 .. 385 433 .. 368 439 .. 0.54 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 9.7e-05 LRRC37 6 ptqqeaptqppeppkevvaqpp 27 p qqe p+qp+epp++ v+ +p T148343_1 1 PLQQEIPAQPSEPPEK-VEPSP 21 679***********99.76666 PP == domain 2 score: 9.2 bits; conditional E-value: 9e-05 LRRC37 1 evepsptqqeaptqppepp 19 eve+sp+qq p+q +epp T148343_1 36 EVESSPVQQAVPAQSSEPP 54 5777777777777777776 PP == domain 3 score: 15.1 bits; conditional E-value: 1.2e-06 LRRC37 56 Dleltitpeptkeaehs 72 l+ltitpept+e+ hs T148343_1 234 GLGLTITPEPTTEVGHS 250 589*************9 PP == domain 4 score: 53.1 bits; conditional E-value: 1.8e-18 LRRC37 25 qppehqevtvptPgqdqaqhptlpnvtvqPlDleltitpeptkeaehsp 73 pp+h +vt+p P+q q+qh++l++vtv PlDleltit+ept+e++ sp T148343_1 258 VPPKHPKVTLPHPDQVQTQHSNLTQVTVEPLDLELTITTEPTTEVKLSP 306 39*******************************************9997 PP == domain 5 score: 13.8 bits; conditional E-value: 3.2e-06 LRRC37 45 ptlpnvtvqPlDleltitpeptkeaehsp 73 pt + qP D +l itpept+e hs+ T148343_1 306 PTTEETSTQPPDPGLAITPEPTTEIGHST 334 66667889*******************97 PP == domain 6 score: 8.0 bits; conditional E-value: 0.00021 LRRC37 32 vtvptPgqdqaqhptlpnvtvqPlDlelti 61 +t+p P+q q+ h +l+ vt P le t T148343_1 339 TTAPHPDQLQTLHRKLTEVTGPPTELEPTQ 368 799************************996 PP == domain 7 score: -1.8 bits; conditional E-value: 0.23 LRRC37 26 ppehqevtvptP.......................gqdqaqhptlpnvt 51 pe+q++ ++t q ++ p+ +n t T148343_1 385 APEEQKASTSTNicelctcgdemlscidlnpeqrlRQVPVPEPNTHNGT 433 4566666655544444444444444444444444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 2197.64 // Query: T148343_2 [L=507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-57 191.3 69.4 8.6e-30 102.8 17.4 4.7 4 LRRC37 Leucine-rich repeat-containing protein 37 family 0.0008 18.9 1.2 0.0016 17.9 1.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> LRRC37 Leucine-rich repeat-containing protein 37 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.8 2.9 5.7e-05 0.46 2 22 .. 57 77 .. 56 78 .. 0.93 2 ! 28.2 15.4 2.1e-10 1.7e-06 1 38 [. 76 112 .. 76 115 .. 0.96 3 ! 102.8 17.4 1.1e-33 8.6e-30 1 73 [] 116 187 .. 115 187 .. 0.98 4 ! 75.1 13.0 4.7e-25 3.8e-21 1 57 [. 182 235 .. 182 239 .. 0.95 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 5.7e-05 LRRC37 2 vepsptqqeaptqppeppkev 22 +eps+tqq+ap+ ppe p+ev T148343_2 57 IEPSLTQQMAPSLPPEFPQEV 77 59*****************95 PP == domain 2 score: 28.2 bits; conditional E-value: 2.1e-10 LRRC37 1 evepsptqqeaptqppeppkevvaqppehqevtvptPg 38 eveps+tqqe p+q+pepp+e ++ +p++qe+tv+tP T148343_2 76 EVEPSLTQQEIPAQIPEPPME-AEPSPTQQEATVQTPE 112 89*******************.99************95 PP == domain 3 score: 102.8 bits; conditional E-value: 1.1e-33 LRRC37 1 evepsptqqeaptqppeppkevvaqppehqevtvptPgqdqaqhptlpnvtvqPlDleltitpeptkeaehsp 73 eveps +qq+ p+qppeppkev+aqpp+h+evtvpt gqdqaqh+ lp++tvqPlDl+ltitpe+t+e+e sp T148343_2 116 EVEPS-SQQMVPSQPPEPPKEVAAQPPAHYEVTVPTQGQDQAQHSILPSITVQPLDLGLTITPESTTEVELSP 187 79988.79**************************************************************998 PP == domain 4 score: 75.1 bits; conditional E-value: 4.7e-25 LRRC37 1 evepsptqqeaptqppeppkevvaqppehqevtvptPgqdqaqhptlpnvtvqPlDl 57 eve+sp+ qe+ptqp pk+vvaq+p++qevtvptPgqdqaqhp++p++tvqPlD T148343_2 182 EVELSPVVQETPTQP---PKKVVAQLPVYQEVTVPTPGQDQAQHPMSPSITVQPLDW 235 89************5...7*************************************6 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 1.2 1.9e-07 0.0016 5 15 .. 438 448 .. 438 448 .. 0.98 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 1.9e-07 DUF1725 5 KWMELEnIILS 15 +WMELE IILS T148343_2 438 TWMELEAIILS 448 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 2164.84 // Query: T148343_3 [L=507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2960.08 // Query: T268417_1 [L=4177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-30 102.5 0.1 1.4e-29 101.5 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 1.5e-11 44.6 0.0 2.9e-11 43.6 0.0 1.4 1 RNase_H RNase H 0.0002 21.2 1.0 0.00035 20.4 1.0 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.5 0.1 2.5e-33 1.4e-29 2 66 .] 2694 2758 .. 2693 2758 .. 0.98 Alignments for each domain: == domain 1 score: 101.5 bits; conditional E-value: 2.5e-33 S-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 2 qklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 k++++rd+lktLNDfQkLlgdINWi+p lgi+t+ L++LF+iLrGd++lt prqLT+eAe++L+ T268417_1 2694 RKVTIHRDQLKTLNDFQKLLGDINWIQPALGIPTYALSNLFSILRGDPSLTGPRQLTKEAEAELQ 2758 689************************************************************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.6 0.0 5.3e-15 2.9e-11 36 141 .. 2928 3029 .. 2908 3030 .. 0.79 Alignments for each domain: == domain 1 score: 43.6 bits; conditional E-value: 5.3e-15 EECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHH...HHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS... CS RNase_H 36 pleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrw...kknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd... 127 +++ ++++++aEL Avie+L a d +n+++DS+Yvv+ tq ++++ + +++ + + ++ + ++ + + ++++h+++H+ T268417_1 2928 QTP-CTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIENAql*FHTDEQLMTLF-----TQFQTAV--RSRMHPFYITHIRAHTPFpgp 3014 455.99****************..8999************.8888998755523333333223.....2344444..456899*********999888 PP .CHHHHHHHHHHHHH CS RNase_H 128 .pkgNemaDrlAkea 141 +++N+maD+l+ +a T268417_1 3015 lTEENQMADHLVANA 3029 889********9875 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 1.0 6.5e-08 0.00035 28 87 .] 3336 3395 .. 3335 3395 .. 0.90 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 6.5e-08 HERV-K_REC 28 epptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 +pptw q+kkl+q++ l + t +++a + ++++ + + ++ +++y+a T268417_1 3336 QPPTWGQIKKLSQMSEENLRKAGQPVTMSNLMVAMIAVITIAMSIPSTRADTENNYTYWA 3395 7***************99999998889888899988999999999999999999*****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.60u 0.42s 00:00:02.02 Elapsed: 00:00:00.71 # Mc/sec: 16830.54 // Query: T268417_2 [L=4176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-21 76.6 0.1 2.6e-21 75.6 0.1 1.6 1 RVP Retroviral aspartyl protease 6.8e-16 58.0 0.0 1.2e-15 57.2 0.0 1.2 1 dUTPase dUTPase 8.5e-09 35.1 0.4 1.5e-08 34.3 0.4 1.4 1 G-patch G-patch domain ------ inclusion threshold ------ 0.033 14.6 0.0 0.058 13.8 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.6 0.1 6.5e-25 2.6e-21 2 100 .. 2446 2543 .. 2445 2544 .. 0.97 Alignments for each domain: == domain 1 score: 75.6 bits; conditional E-value: 6.5e-25 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +++P +++ i+gk++++l+DtGAd+++is +++P +w ++ a+ ++ G+g+ e++qs++i+++ + + g+++p+i++ +p+nl+ rdlLq++g++ T268417_2 2446 DKHPTCEITIQGKKFKGLVDTGADISIISLQHWPSTWSIHPAQFNIVGVGKPPEVYQSSYILHCEGPGGQPGTIQPIITS-VPINLWRRDLLQQWGAQ 2542 578*****************************************************************************.***************98 PP E CS RVP 100 L 100 + T268417_2 2543 V 2543 5 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.2 0.0 2.8e-19 1.2e-15 7 106 .. 2318 2416 .. 2313 2434 .. 0.87 Alignments for each domain: == domain 1 score: 57.2 bits; conditional E-value: 2.8e-19 BESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 +++sA Dl+ +k + + p + + +pt+++ ++p+g l+l+RS+l++k + v +gvids y+Ge+++v+ +t+ + k + g+RiAqL++++ T268417_2 2318 SATTAGSAAVDLCCTKAVSLLPgEPPQKIPTGVCGPMPAGRIRLLLGRSSLNMKDVQVQTGVIDSYYNGEIQIVI--STSVPWKAEPGERIAQLLIVP 2413 567899****************7789*******************************************888887..68899**************99 PP BEC CS dUTPase 104 ilt 106 +++ T268417_2 2414 YVE 2416 988 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.3 0.4 3.6e-12 1.5e-08 4 44 .. 2553 2593 .. 2550 2594 .. 0.94 Alignments for each domain: == domain 1 score: 34.3 bits; conditional E-value: 3.6e-12 G-patch 4 iGvkmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 + m+ mG+ +G+GLGk+ q +eP++ +++ r GlG+ T268417_2 2553 RSQHMMHEMGYVPGMGLGKHLQVLKEPLQLERQSSRQGLGY 2593 5678************************************8 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 1.4e-05 0.058 2 25 .. 2452 2475 .. 2451 2481 .. 0.92 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.4e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +iis T268417_2 2452 EITIQGKKFKGLVDTGADISIISL 2475 689*******************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.70u 0.43s 00:00:02.13 Elapsed: 00:00:00.83 # Mc/sec: 14393.77 // Query: T268417_3 [L=4176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-18 64.4 0.0 1.7e-17 63.6 0.0 1.4 1 rve Integrase core domain 1.6e-10 40.9 0.1 2.7e-10 40.1 0.1 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 4.4e-10 39.2 0.6 1.1e-09 37.9 0.6 1.7 1 Integrase_Zn Integrase Zinc binding domain 3.9e-05 22.7 0.5 9.4e-05 21.5 0.5 1.7 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.6 0.0 4.2e-21 1.7e-17 3 118 .. 3085 3195 .. 3084 3196 .. 0.94 Alignments for each domain: == domain 1 score: 63.6 bits; conditional E-value: 4.2e-21 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p +lwq+Dvt+++ + g+ ay++v + fs++++ + s e ++ v + l + +a g p ++ Dn++ yts+a+++f + +++++ + p+ T268417_3 3085 EPKSLWQMDVTHVP--SFGRLAYVHVCVGPFSHFVWYTCQSGE-SSACVKHHLLQCFAMMGI--PAYIKKDNAPGYTSQALATFFSVWDTKHIISIPY 3177 699***********..56777**********************.888888888889****99..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 ++q +++vEr+n l+++ T268417_3 3178 NSQGQAIVERMNLSLEQQ 3195 ************999886 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.1 6.6e-14 2.7e-10 117 165 .. 3444 3492 .. 3437 3495 .. 0.91 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 6.6e-14 HERV-K_env_2 117 ipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 i k+ +vlvwe+c+a+ a +l+n+ +g iidw+p+g f nc+ q+ T268417_3 3444 IEPGQKKMNVLVWEDCIAEQAEMLHNDSYGIIIDWSPKGMFSLNCASQS 3492 55567999**************************************996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.9 0.6 2.7e-13 1.1e-09 1 37 [. 3032 3068 .. 3032 3069 .. 0.94 Alignments for each domain: == domain 1 score: 37.9 bits; conditional E-value: 2.7e-13 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqs.CptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+ + CptCq T268417_3 3032 ARHFHNLTHVNASGLKRRYSITWKEAKAII-Q*CPTCQ 3068 899***************************.8888887 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.5 2.3e-08 9.4e-05 4 49 .. 3250 3294 .. 3247 3295 .. 0.91 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.3e-08 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+dl ++ W +++++grG++c P +++++w+P R +++ T268417_3 3250 LVCWRDLITKIWEI-GNIITWGRGYACGSPGLNQQPIWIPSRHLKP 3294 689*********84.69*************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.57u 0.41s 00:00:01.98 Elapsed: 00:00:00.78 # Mc/sec: 15316.44 // Query: T138163_1 [L=549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.69 # Mc/sec: 2276.23 // Query: T138163_2 [L=549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.68 # Mc/sec: 2309.70 // Query: T138163_3 [L=548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 2375.36 // Query: T001678_1 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 6117.77 // Query: T001678_2 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 5930.88 // Query: T001678_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.73 # Mc/sec: 5443.41 // Query: T070679_1 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 4836.59 // Query: T070679_2 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.70 # Mc/sec: 4422.03 // Query: T070679_3 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 4620.03 // Query: T325804_1 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.65 # Mc/sec: 9493.55 // Query: T325804_2 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 8691.28 // Query: T325804_3 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.79 # Mc/sec: 7811.15 // Query: T094824_1 [L=5437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:00.91 # Mc/sec: 17092.67 // Query: T094824_2 [L=5437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.36s 00:00:02.12 Elapsed: 00:00:00.96 # Mc/sec: 16202.43 // Query: T094824_3 [L=5436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.72 # Mc/sec: 21599.27 // Query: T293087_1 [L=733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 4111.74 // Query: T293087_2 [L=733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3678.93 // Query: T293087_3 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3739.51 // Query: T194253_1 [L=4996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.40s 00:00:01.63 Elapsed: 00:00:00.66 # Mc/sec: 21655.62 // Query: T194253_2 [L=4996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.65 # Mc/sec: 21988.78 // Query: T194253_3 [L=4996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.18 11.8 22.7 48 4.1 0.1 8.5 9 RS4NT RS4NT (NUC023) domain Domain annotation for each model (and alignments): >> RS4NT RS4NT (NUC023) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 0.032 5.2e+02 8 16 .. 2540 2548 .. 2538 2549 .. 0.91 2 ? 4.0 0.1 0.003 48 7 16 .. 2607 2616 .. 2606 2617 .. 0.93 3 ? 4.1 0.1 0.0029 48 8 17 .. 2783 2792 .. 2781 2792 .. 0.91 4 ? 4.0 0.1 0.003 48 7 16 .. 2848 2857 .. 2847 2858 .. 0.93 5 ? -2.2 0.1 0.27 4.4e+03 10 16 .. 2884 2890 .. 2883 2891 .. 0.85 6 ? 2.1 0.0 0.012 2e+02 8 17 .. 3090 3099 .. 3088 3099 .. 0.91 7 ? 1.8 0.0 0.015 2.4e+02 8 16 .. 3162 3170 .. 3160 3171 .. 0.91 8 ? 1.8 0.0 0.015 2.4e+02 8 16 .. 3301 3309 .. 3299 3310 .. 0.91 9 ? 1.5 0.0 0.018 2.9e+02 8 17 .. 3404 3413 .. 3402 3413 .. 0.90 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.032 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194253_3 2540 KSLKAPGHW 2548 9******** PP == domain 2 score: 4.0 bits; conditional E-value: 0.003 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194253_3 2607 LKSLSAPEHW 2616 9********* PP == domain 3 score: 4.1 bits; conditional E-value: 0.0029 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+APkhW+ T194253_3 2783 KSLSAPKHWQ 2792 9********5 PP == domain 4 score: 4.0 bits; conditional E-value: 0.003 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194253_3 2848 LKSLSAPEHW 2857 9********* PP == domain 5 score: -2.2 bits; conditional E-value: 0.27 TTS-GGG CS RS4NT 10 laAPkhW 16 ++AP hW T194253_3 2884 ISAPEHW 2890 79***** PP == domain 6 score: 2.1 bits; conditional E-value: 0.012 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+AP hW+ T194253_3 3090 KSLSAPEHWQ 3099 9********5 PP == domain 7 score: 1.8 bits; conditional E-value: 0.015 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194253_3 3162 KSLSAPEHW 3170 9******** PP == domain 8 score: 1.8 bits; conditional E-value: 0.015 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194253_3 3301 KSLSAPEHW 3309 9******** PP == domain 9 score: 1.5 bits; conditional E-value: 0.018 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K l+AP hW+ T194253_3 3404 KTLSAPEHWQ 3413 99*******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.68 # Mc/sec: 21018.69 // Query: T278617_1 [L=4106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.66 # Mc/sec: 17797.83 // Query: T278617_2 [L=4106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 18071.64 // Query: T278617_3 [L=4106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.35s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 17797.83 // Query: T278164_1 [L=2026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.37 9.9 10.2 1.5 7.9 0.3 3.5 4 DUF1943 Domain of unknown function (DUF1943) Domain annotation for each model (and alignments): >> DUF1943 Domain of unknown function (DUF1943) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.025 4e+02 242 261 .. 722 741 .. 688 752 .. 0.53 2 ? 6.1 0.3 0.00033 5.3 239 279 .. 803 843 .. 801 847 .. 0.92 3 ? -1.8 0.1 0.084 1.4e+03 242 261 .. 859 878 .. 857 887 .. 0.60 4 ? 7.9 0.3 9e-05 1.5 240 291 .. 1001 1053 .. 999 1067 .. 0.85 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.025 DUF1943 242 egdvkpsvsvevvatmgvdp 261 e+dv sv v+v+ +gvd T278164_1 722 ELDVDVSVDVDVDVSVGVDV 741 44444444444444444443 PP == domain 2 score: 6.1 bits; conditional E-value: 0.00033 DUF1943 239 iklegdvkpsvsvevvatmgvdpelvqsgvkvksnlhsstp 279 ++++g v vsv+v+ t+gv + v++gv ++ ++++s++ T278164_1 803 VDVNGIVDLDVSVDVDVTVGVKCVDVSVGVAMDVSVNMSVE 843 789999***************998************99975 PP == domain 3 score: -1.8 bits; conditional E-value: 0.084 DUF1943 242 egdvkpsvsvevvatmgvdp 261 e+dv sv v+v+ +gvd T278164_1 859 ELDVDVSVDVDVDVSVGVDV 878 56666666666666666665 PP == domain 4 score: 7.9 bits; conditional E-value: 9e-05 DUF1943 240 klegdvkpsvsvevvatmgvdp.elvqsgvkvksnlhsstplkakvkldlgkk 291 ++ dv v v+++ +gvd v + v+v n+++++ ++++v++d+g++ T278164_1 1001 DVGMDVDVGVDVDMDVDVGVDVdVDVDVSVGVSVNVNVEVYVDVDVSVDVGGG 1053 67778889999999999999998899999999999999999999999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 9348.45 // Query: T278164_2 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.42 9.7 9.5 1.9 7.6 9.5 1.8 1 DUF1943 Domain of unknown function (DUF1943) Domain annotation for each model (and alignments): >> DUF1943 Domain of unknown function (DUF1943) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 9.5 0.00011 1.9 220 284 .. 909 969 .. 886 999 .. 0.52 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00011 DUF1943 220 lkvsgkadlep.....lsqllpkkiklegdvkpsvsvevvatmgvdpelvqsgvkvksnlhsstplkakv 284 ++ + + +++l+++v svs +v+ +gvd v++ v+v+ ++ +s++++++v T278164_2 909 VS--------VevsvdVDVSVGVNVSLDVSVDVSVSGDVSVDVGVDV-DVSVDVGVDVSVDVSVGVDVDV 969 11........1111122233444555555555555556666666655.4444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.61 # Mc/sec: 9497.02 // Query: T278164_3 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0004 19.6 20.6 0.016 14.3 7.6 3.3 3 DUF1943 Domain of unknown function (DUF1943) ------ inclusion threshold ------ 0.11 12.2 21.8 2.5 7.8 12.7 3.4 2 MspA MspA Domain annotation for each model (and alignments): >> DUF1943 Domain of unknown function (DUF1943) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 7.6 2e-06 0.016 217 289 .. 541 629 .. 530 638 .. 0.66 2 ! 7.7 4.3 0.00021 1.7 218 287 .. 612 679 .. 610 689 .. 0.54 3 ! 6.8 0.2 0.0004 3.3 226 270 .. 755 797 .. 750 806 .. 0.53 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2e-06 DUF1943 217 vvklkvsgkadlep...............lsqllpkkiklegdvkpsvsvevvatmgvdp.elvqsgvkvksnlhsstplkakvkldlg 289 +v+++v++++d++ +s + ++++++dv svsv+v+ ++gvd v + v v + +s++++++v +d++ T278164_3 541 SVNVDVNVNVDVSVdvdlrvdvdvgvdmdDSVDVDVSVDVTVDVDVSVSVDVDVNVGVDVsVDVDVSVDVSVDVDVSVSVDVDVDVDVN 629 55555555555554445555666677777667788899999999999999999999999956666666666666666666666666633 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00021 DUF1943 218 vklkvsgkadleplsqllpkkiklegdvkpsvsvevvatmgvdpelvqsgvkvksnlhsstplkakvkld 287 v+++vs+++d++ + + +++++dv sv v+v+ + v p v++ v v ++ + l+++v +d T278164_3 612 VDVDVSVSVDVD-VDVDVNVGVDVSVDVDVSVDVDVSVGVDVSP-DVSVSVDVSVDVNGIVDLDVSVDVD 679 555555555555.3333445666666666666666666666666.5555555554444444444444444 PP == domain 3 score: 6.8 bits; conditional E-value: 0.0004 DUF1943 226 adleplsqllpkkiklegdvkpsvsvevvatmgvdp.elvqsgvkv 270 +d++ + + ++++++dv vsv+v+ +gvd v++ v v T278164_3 755 VDVN---GSVDLDVSVDVDVSVEVSVDVDVSVGVDVsPDVSVSVSV 797 3333...223344555666666666666666666554555555444 PP >> MspA MspA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.7 0.00031 2.5 26 122 .. 571 666 .. 519 692 .. 0.73 2 ? 5.5 1.5 0.0015 12 59 118 .. 723 795 .. 722 805 .. 0.36 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00031 MspA 26 sreafvsgkatvkvtgpgaakvtggtlevGYqvGCqvdvsgaagvelggsagvtpsvgagagvgsglsgslggklgvsgslsvklkP..Gtitevplgk 122 s ++ vs ++tv v+ + + + + vG v vdvs + v++ +s++v+ +v++ +vg+++s+++ +++ v+ s++v++ P ++v+++ T278164_3 571 SVDVDVSVDVTVDVDVSVS---VDVDVNVGVDVSVDVDVSVDVSVDVDVSVSVDVDVDVDVNVGVDVSVDVDVSVDVDVSVGVDVSPdvSVSVDVSVDV 666 5556677777777773333...34458888888888888776666666666666666667778888888888888888888888888433334444444 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0015 MspA 59 GCqvdvsgaagvelgg...............sagvtpsvga......gagvgsglsgslggklgvsgslsvklkPGtitev 118 GC+ + + + g e g s++v+ sv+ +v+++++ v+ s++v++ P ++v T278164_3 723 GCGCKCGRGCGCECGCgcepgcecececvdmSVDVNGSVDLdvsvdvDVSVEVSVD--------VDVSVGVDVSPDVSVSV 795 66666655555555553333333333333332222222222111111222222333........33333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 9195.52 // Query: T052008_1 [L=2705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 11905.45 // Query: T052008_2 [L=2705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.43s 00:00:01.68 Elapsed: 00:00:00.86 # Mc/sec: 8998.31 // Query: T052008_3 [L=2705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.70 # Mc/sec: 11055.06 // Query: T316342_1 [L=2864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.42s 00:00:01.87 Elapsed: 00:00:00.74 # Mc/sec: 11072.19 // Query: T316342_2 [L=2864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.75 # Mc/sec: 10924.56 // Query: T316342_3 [L=2864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.68 # Mc/sec: 12049.14 // Query: T316821_1 [L=2207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.41s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 8649.11 // Query: T316821_2 [L=2207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.63 # Mc/sec: 10021.99 // Query: T316821_3 [L=2207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.63 # Mc/sec: 10021.99 // Query: T053055_1 [L=2278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 8574.96 // Query: T053055_2 [L=2278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 8463.60 // Query: T053055_3 [L=2278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 8689.29 // Query: T222932_1 [L=3059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-19 68.4 18.8 4.1e-09 35.2 0.2 3.1 3 Fibrinogen_BP Fibrinogen binding protein ------ inclusion threshold ------ 0.099 12.9 3.0 16 5.8 0.1 4.9 5 DUF3221 Protein of unknown function (DUF3221) 0.1 12.2 15.7 4.3 6.8 0.2 6.3 9 BRCA-2_helical BRCA2, helical 0.15 12.5 0.1 21 5.6 0.0 4.7 5 DUF3579 Protein of unknown function (DUF3579) Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 5.8 3e-09 1.2e-05 29 223 .. 1425 1619 .. 1383 1681 .. 0.39 2 ! 17.2 1.0 2.9e-07 0.0012 68 244 .. 1991 2167 .. 1977 2172 .. 0.25 3 ! 35.2 0.2 1e-12 4.1e-09 29 208 .. 2494 2673 .. 2491 2727 .. 0.34 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 3e-09 Fibrinogen_BP 29 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenks 122 vle rd vle r + vle rd + vle + n e rd vle rd + T222932_1 1425 SVLESYVRDRRSDPSSSVLESYVRYKHSDTSRSVLESYVRDKHSDPRSTVLESYVNGKNSDHGNNAQESYVRDKHSDPPSSVLESYVRDKYSNH 1518 2233333333322233333333333333333333333333333333333333222222222222222222333333333333333333332222 PP Fibrinogen_BP 123 qgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdae.nrsqgnvlerrqrdae 215 vle +d vle rd vl+ +d + vl+ ++ + nvle rd ++s+ +le rd T222932_1 1519 SSSVLESYVKDKLSDHSRRVLESYVRDKLSDKSRSVLKSYMKDKYSDPRNTVLKSYDKGKHSDPNMNVLESYVRDKH*DHSR-SILESYVRDKH 1611 2333333333333222233333333332222222233333333333333333333333333333333333333332222222.12222222222 PP Fibrinogen_BP 216 nrsqgnvl 223 vl T222932_1 1612 SDPCSSVL 1619 22222222 PP == domain 2 score: 17.2 bits; conditional E-value: 2.9e-07 Fibrinogen_BP 68 rdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvler 161 d vle d vl+ rd v e rd + + vl+ rd vle + vle T222932_1 1991 TDKHSDHSRSVLESYVTDKRSDHSSSVLQSNVRDKHSEPSSSVQESYVRDQQSDPRSSVLKSYVRDKHSEPSRSVLESYVTEKHSDHSSSVLES 2084 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP Fibrinogen_BP 162 rqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvler..rqrdaenrsqgnvlerrqrdaenrsqgnvlerrqr 244 r vle rd + vl+ + + nvle r++ ++ vle r+ + vle r T222932_1 2085 YVRYKLSDHSRRVLESYVRDKLSDPRSSVLKSYVKGKHLHPSVNVLES*vRDKHSD--HSRSVLESYVRNKHSDHRRSVLEYYVR 2167 22222222222222222222222222222222222222222222222111111111..111122222222222222222222222 PP == domain 3 score: 35.2 bits; conditional E-value: 1e-12 Fibrinogen_BP 29 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenks 122 nvle rd +le r+ vle rd + vle r+ le rd + v e rd + T222932_1 2494 NVLESYVRDKHSDHGRSILESYVRNKHSDHSRSVLESYMRDKHSDPRSSVLESYVREKHSEHSRSALESYVRDKHSEPRNIVRESCVRDRHLDT 2587 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP Fibrinogen_BP 123 qgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvle 208 + vle r vle d s vl +d +s+ vl+ + nvle rd + vle T222932_1 2588 RSSVLESHVRVKHSDPHSSVLEFYVSDNHSDSSSSVLYSYVKDKHSESRSSVLKSYVKGKHTDPSINVLESYVRDRHSDPRSSVLE 2673 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP >> DUF3221 Protein of unknown function (DUF3221) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 0.13 5.2e+02 14 56 .. 1453 1495 .. 1439 1517 .. 0.79 2 ? 5.8 0.1 0.0038 16 11 56 .. 1993 2038 .. 1985 2044 .. 0.82 3 ? -0.3 0.0 0.31 1.2e+03 16 47 .. 2062 2093 .. 2041 2106 .. 0.76 4 ? -0.6 0.0 0.38 1.6e+03 15 50 .. 2507 2542 .. 2495 2566 .. 0.73 5 ? -2.4 0.0 1.4 5.8e+03 15 47 .. 2555 2587 .. 2543 2601 .. 0.63 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.13 XS--EEEEEEEEEE-SSEEEEE-SSS---CCGGGS-HHHHHHH CS DUF3221 14 vskkvvleGYViekknettllivdekvetktslqnyieqelne 56 ++ vle YV k+++ + ++ v++k+s++ +qe + T222932_1 1453 DTSRSVLESYVRDKHSDPRSTVLESYVNGKNSDHGNNAQESYV 1495 3667788999999999999999999999999988777776654 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0038 XXSXS--EEEEEEEEEE-SSEEEEE-SSS---CCGGGS-HHHHHHH CS DUF3221 11 nekvskkvvleGYViekknettllivdekvetktslqnyieqelne 56 ++ + vle YV+ k++++ + +++v +k+s+ + +qe + T222932_1 1993 KHSDHSRSVLESYVTDKRSDHSSSVLQSNVRDKHSEPSSSVQESYV 2038 4444677899*************************99888887765 PP == domain 3 score: -0.3 bits; conditional E-value: 0.31 --EEEEEEEEEE-SSEEEEE-SSS---CCGGG CS DUF3221 16 kkvvleGYViekknettllivdekvetktslq 47 vle YV+ek++++ + ++ v k s++ T222932_1 2062 SRSVLESYVTEKHSDHSSSVLESYVRYKLSDH 2093 45678889999999999888888877777766 PP == domain 4 score: -0.6 bits; conditional E-value: 0.38 S--EEEEEEEEEE-SSEEEEE-SSS---CCGGGS-H CS DUF3221 15 skkvvleGYViekknettllivdekvetktslqnyi 50 +le YV +k++++ + ++ + +k+s+ + T222932_1 2507 HGRSILESYVRNKHSDHSRSVLESYMRDKHSDPRSS 2542 455677888888888888888888888888876544 PP == domain 5 score: -2.4 bits; conditional E-value: 1.4 S--EEEEEEEEEE-SSEEEEE-SSS---CCGGG CS DUF3221 15 skkvvleGYViekknettllivdekvetktslq 47 +le YV k++e ++ ++ v + + ++ T222932_1 2555 HSRSALESYVRDKHSEPRNIVRESCVRDRHLDT 2587 445566677777777777777777666666655 PP >> BRCA-2_helical BRCA2, helical # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.097 3.9e+02 12 57 .. 1444 1489 .. 1434 1510 .. 0.77 2 ? 2.1 0.1 0.029 1.2e+02 8 56 .. 1488 1535 .. 1482 1554 .. 0.66 3 ? 1.9 0.1 0.034 1.4e+02 10 52 .. 1522 1564 .. 1512 1579 .. 0.82 4 ? -3.6 0.0 1.7 6.9e+03 26 50 .. 1634 1658 .. 1630 1662 .. 0.83 5 ? -0.3 0.0 0.16 6.4e+02 27 56 .. 1986 2015 .. 1978 2032 .. 0.56 6 ? 6.8 0.2 0.0011 4.3 7 56 .. 2030 2079 .. 2025 2104 .. 0.82 7 ? -2.4 0.0 0.69 2.8e+03 16 47 .. 2135 2166 .. 2134 2170 .. 0.66 8 ? 6.4 0.2 0.0015 5.9 5 53 .. 2522 2570 .. 2518 2600 .. 0.81 9 ? -2.9 0.0 1 4.1e+03 20 52 .. 2617 2649 .. 2598 2654 .. 0.81 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.097 HHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S---STT CS BRCA-2_helical 12 emriekkkrqeirpqpgslllkKtstvkRisLkaavegklpskyse 57 e++++ k+ ++ r + s ++ K+s + L+++v+gk+ + + T222932_1 1444 ESYVRYKHSDTSRSVLESYVRDKHSDPRSTVLESYVNGKNSDHGNN 1489 6677888888888888999999988888888999999988775544 PP == domain 2 score: 2.1 bits; conditional E-value: 0.029 HHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S---ST CS BRCA-2_helical 8 rdlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklpskys 56 + qe+++++k+ + + + s ++ K s+++ + L+++v++kl +s T222932_1 1488 NNAQESYVRDKHSDPPSSVLESYVRDKYSNHSSSVLESYVKDKLSD-HS 1535 5677777777777777777777777777777777777777776654.33 PP == domain 3 score: 1.9 bits; conditional E-value: 0.034 HHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S- CS BRCA-2_helical 10 lqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklp 52 + e+++++k ++ r + s ++ K s ++R+ Lk+++++k T222932_1 1522 VLESYVKDKLSDHSRRVLESYVRDKLSDKSRSVLKSYMKDKYS 1564 5578899999999999999999999999999999999988764 PP == domain 4 score: -3.6 bits; conditional E-value: 1.7 ---HHHHHHCSSS--EETTGGGTS- CS BRCA-2_helical 26 qpgslllkKtstvkRisLkaavegk 50 + s ++ K+s R+ L+++v+++ T222932_1 1634 ALESYVRDKHSDARRSVLESYVKDR 1658 56788999999*********99987 PP == domain 5 score: -0.3 bits; conditional E-value: 0.16 --HHHHHHCSSS--EETTGGGTS-S---ST CS BRCA-2_helical 27 pgslllkKtstvkRisLkaavegklpskys 56 + s ++ K+s ++R+ L+++v +k+ + s T222932_1 1986 LESYVTDKHSDHSRSVLESYVTDKRSDHSS 2015 455566666666777777766666554322 PP == domain 6 score: 6.8 bits; conditional E-value: 0.0011 HHHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S---ST CS BRCA-2_helical 7 ardlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklpskys 56 + +qe+++++++ + ++ + s ++ K+s+ +R+ L+++v +k + s T222932_1 2030 SSSVQESYVRDQQSDPRSSVLKSYVRDKHSEPSRSVLESYVTEKHSDHSS 2079 6679*************************************999876443 PP == domain 7 score: -2.4 bits; conditional E-value: 0.69 HHHHTS-------HHHHHHCSSS--EETTGGG CS BRCA-2_helical 16 ekkkrqeirpqpgslllkKtstvkRisLkaav 47 ++k+ ++ r + s +++K+s + R+ L+ +v T222932_1 2135 RDKHSDHSRSVLESYVRNKHSDHRRSVLEYYV 2166 55666666777777777777777777777666 PP == domain 8 score: 6.4 bits; conditional E-value: 0.0015 HHHHHHHHHHHHHHHTS-------HHHHHHCSSS--EETTGGGTS-S-- CS BRCA-2_helical 5 qlardlqemriekkkrqeirpqpgslllkKtstvkRisLkaavegklps 53 + +r + e+++++k+ + ++ + s +++K+s+++R+ L+++v +k + T222932_1 2522 DHSRSVLESYMRDKHSDPRSSVLESYVREKHSEHSRSALESYVRDKHSE 2570 567888999**********************************998765 PP == domain 9 score: -2.9 bits; conditional E-value: 1 TS-------HHHHHHCSSS--EETTGGGTS-S- CS BRCA-2_helical 20 rqeirpqpgslllkKtstvkRisLkaavegklp 52 ++ + ++s ++ K+s++ + Lk++v+gk T222932_1 2617 SDSSSSVLYSYVKDKHSESRSSVLKSYVKGKHT 2649 55566778899999999999999*****99865 PP >> DUF3579 Protein of unknown function (DUF3579) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.0052 21 9 37 .. 1381 1409 .. 1379 1423 .. 0.88 2 ? -3.4 0.0 3.3 1.3e+04 9 20 .. 1796 1807 .. 1794 1809 .. 0.86 3 ? -2.6 0.0 1.8 7.5e+03 6 20 .. 1905 1919 .. 1901 1919 .. 0.87 4 ? -0.4 0.0 0.38 1.6e+03 8 21 .. 2256 2269 .. 2245 2284 .. 0.85 5 ? -3.3 0.0 3.1 1.2e+04 9 25 .. 2305 2321 .. 2303 2323 .. 0.78 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0052 EEETTS-B-S-TTHHHHHHHTT-EE-... CS DUF3579 9 GvtkegkkFrpsdWaeRLagvlasfrpeg 37 G+ +g++Frps R++++ +fr+++ T222932_1 1381 GMLCQGQTFRPSQQCSRISSAGQTFRHSQ 1409 77889****************99999765 PP == domain 2 score: -3.4 bits; conditional E-value: 3.3 EEETTS-B-S-T CS DUF3579 9 GvtkegkkFrps 20 G+ eg+ Frps T222932_1 1796 GILCEGQIFRPS 1807 88889******9 PP == domain 3 score: -2.6 bits; conditional E-value: 1.8 EEEEEETTS-B-S-T CS DUF3579 6 liqGvtkegkkFrps 20 + +G+ eg+ Frps T222932_1 1905 VCSGILCEGQIFRPS 1919 6789999*******9 PP == domain 4 score: -0.4 bits; conditional E-value: 0.38 EEEETTS-B-S-TT CS DUF3579 8 qGvtkegkkFrpsd 21 +G+ eg++Frps T222932_1 2256 SGIPCEGQTFRPSQ 2269 58888999999985 PP == domain 5 score: -3.3 bits; conditional E-value: 3.1 EEETTS-B-S-TTHHHH CS DUF3579 9 GvtkegkkFrpsdWaeR 25 G+ eg++Frp + R T222932_1 2305 GMLCEGQTFRPREQCSR 2321 78889******876655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.32u 0.41s 00:00:01.73 Elapsed: 00:00:00.78 # Mc/sec: 11219.59 // Query: T222932_2 [L=3059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-19 67.6 0.0 1.7e-11 43.1 0.0 3.2 3 Fibrinogen_BP Fibrinogen binding protein Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1.3 0.0 0.0052 85 158 196 .. 1379 1417 .. 1371 1424 .. 0.22 2 ! 43.1 0.0 1e-15 1.7e-11 46 278 .. 1746 1978 .. 1727 1984 .. 0.45 3 ! 18.5 0.0 3e-08 0.00048 28 229 .. 2221 2422 .. 2213 2434 .. 0.26 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.0052 Fibrinogen_BP 158 vlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqr 196 vle rd + vle +d ++ vle r T222932_2 1379 VLECYVRDRHLDPRSSVLESHLQDKHSDTRSSVLEFYVR 1417 111111111111111111111111111111111111111 PP == domain 2 score: 43.1 bits; conditional E-value: 1e-15 Fibrinogen_BP 46 vlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvl..errqrdaenr 137 vle r vle rd vle rd vle rd g vle rd + vl rd T222932_2 1746 VLESYVRHKHSYHSRSVLESYVRDNHSDHSRSVLESYVRDNHSDHSRSVLESYVRDKYSDPHGSVLESFVRDKHSHPSNTVL*sYV--RDKHSD 1837 44444444444444444444444444444444444444444444444444444444444444444444444444444444444222..222233 PP Fibrinogen_BP 138 sqgnvlerrqrda..enrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrd 229 vle r + rs vle r v e rd vle rd vle rd vle rd T222932_2 1838 PSSSVLESYVRGKh*DPRS--SVLESYVRHKHSYHSRSVPESYVRDNHSDHSRSVLESFVRDNHSDHSRCVLESYVRDKYSDPHSSVLESFVRD 1929 3334444444443222222..3444444444444444444444444444444444444444444444444444444444444444444444444 PP Fibrinogen_BP 230 aenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrda 278 vle rd + vle +d nvle rd+ T222932_2 1930 KHSDPSWRVLESCVRDQHSDPRSSVLECYVKDNHSDPHSNVLESYVRDI 1978 4444444444444444444444444444444444444444444444444 PP == domain 3 score: 18.5 bits; conditional E-value: 3e-08 Fibrinogen_BP 28 gnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenk 121 g vle rd + vl+ r+ + vl rd vle r+ + le r vle +d T222932_2 2221 GSVLESYVRDKHSEPRSSVLKSYVRERHLDPRNSVLVSHVRDKHSDPPSRVLEFYVRERHSNPSSSALESDLRGRHSDPSSSVLECYVKDKHSD 2314 2233332222222222223322222222222222222222332222222333322222222222222222222222222222333333333322 PP Fibrinogen_BP 122 sqgnvlerrqrdae.nrsqgnvlerrqrdaenrsqgnvler..rqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqr 212 vle +d + s vle r+ + vle ++ +e s vle rd+ vle +d v e r T222932_2 2315 HGSSVLESYVKDKH*D-SHSSVLESYVRNNHSDTSRSVLES*vWEKHSEPSS--SVLESYVRDIHSDHGSSVLEWYVKDKHSDPCSSVPEFYVR 2405 2223333222222111.22223333333222222222333221222222221..2233333333333333333333333333222333333333 PP Fibrinogen_BP 213 daenrsqgnvlerrqrd 229 d vle d T222932_2 2406 DKHSDHSSSVLESYMTD 2422 32222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.32u 0.39s 00:00:01.71 Elapsed: 00:00:00.78 # Mc/sec: 11219.59 // Query: T222932_3 [L=3059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.74 # Mc/sec: 11826.05 // Query: T372719_1 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.66 # Mc/sec: 4954.44 // Query: T372719_2 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-15 56.3 0.0 4.2e-15 55.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 0.00016 21.5 7.1 0.00027 20.8 1.5 2.5 2 zf-CCHC Zinc knuckle 0.0014 18.2 12.1 0.049 13.2 2.3 2.8 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger ------ inclusion threshold ------ 6.1 7.1 6.2 4.4 7.6 1.4 2.1 2 eIF3g Eukaryotic translation initiation factor 3 subunit Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.7 0.0 1e-18 4.2e-15 1 220 [. 709 876 .. 709 878 .. 0.90 Alignments for each domain: == domain 1 score: 55.7 bits; conditional E-value: 1e-18 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkvpt 99 ++K++ +syR++ d++++n+ + +++ +p++ + l++ +++ ++++ lDlk+aF+++pl+ +++l+af+ + T372719_2 709 VQKPD-KSYRLV----QDLRLINQTVLP---------IHPVMPNLYTL-------------LSSIPSStTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTD 781 58***.*****7....7***********.........99999999999.............44445555****************************994 PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 + ++ +++ ++++lpq + SP f+ ++++ l +++ +l++Y+D +l+ s s e+ q++ v ++l g++++ T372719_2 782 L------------------DTHQ-SQQLTWAVLPQDFRDSPHYFSQALSNDLLSFHPS--ASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRVS 860 4..................4444.999*****************99998777777775..69************************************** PP GGG-EEE.....ESSEEETTE CS RVT_1 200 peKtklvlfsgkseevkyLGv 220 p+K ++ s +++ LG+ T372719_2 861 PSKAQIS-----SPSITHLGI 876 *******.....899999997 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 1.5 6.5e-08 0.00027 2 16 .. 529 543 .. 528 544 .. 0.95 2 ? 3.4 0.4 0.021 85 11 17 .. 560 566 .. 560 567 .. 0.95 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 6.5e-08 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 C++C + GH+a++C T372719_2 529 SCFKCRKSGHWAKEC 543 6************** PP == domain 2 score: 3.4 bits; conditional E-value: 0.021 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T372719_2 560 HWKSDCP 566 ******9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 2.3 1.2e-05 0.049 2 18 .. 527 543 .. 526 545 .. 0.93 2 ! 9.3 2.5 0.0002 0.83 1 20 [. 549 567 .. 549 569 .. 0.85 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.2e-05 --B-TTT-SSBS-TTT- CS zf-CCHC_5 2 pglCpRCkkgkHwardC 18 +g C +C k Hwa++C T372719_2 527 SGSCFKCRKSGHWAKEC 543 688************** PP == domain 2 score: 9.3 bits; conditional E-value: 0.0002 ---B-TTT-SSBS-TTT--- CS zf-CCHC_5 1 ppglCpRCkkgkHwardChs 20 pp Cp C g+Hw++dC + T372719_2 549 PPKPCPICA-GTHWKSDCPA 567 67779***6.********65 PP >> eIF3g Eukaryotic translation initiation factor 3 subunit G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.2 0.072 2.9e+02 103 120 .. 526 544 .. 482 548 .. 0.69 2 ? 7.6 1.4 0.0011 4.4 107 121 .. 553 567 .. 550 570 .. 0.92 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.072 eIF3g 103 klvkCriC.kgdHfTskCP 120 + +C C k H+ +C T372719_2 526 LSGSCFKCrKSGHWAKECL 544 34689999669*******5 PP == domain 2 score: 7.6 bits; conditional E-value: 0.0011 eIF3g 107 CriCkgdHfTskCPy 121 C iC g H+ s CP T372719_2 553 CPICAGTHWKSDCPA 567 99************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 5026.26 // Query: T372719_3 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 4876.22 // Query: T018826_1 [L=7325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-29 101.0 16.4 6.2e-29 101.0 16.4 1.9 2 CCDC144C CCDC144C protein coiled-coil region 0.00011 21.7 0.0 0.00019 20.8 0.0 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.1 5.9 2 1.6e+04 191 237 .. 157 203 .. 145 254 .. 0.59 2 ! 101.0 16.4 7.6e-33 6.2e-29 1 96 [. 703 798 .. 703 799 .. 0.99 Alignments for each domain: == domain 1 score: -6.1 bits; conditional E-value: 2 CCDC144C 191 aqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 + + l ++++e+e+ +++ +kq ++e +se + L + + T018826_1 157 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 44444444555555555555555555555555555555544444433 PP == domain 2 score: 101.0 bits; conditional E-value: 7.6e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018826_1 703 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 798 9*********************************************************************************************95 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.0 2.3e-08 0.00019 133 175 .. 2006 2048 .. 2003 2057 .. 0.89 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 2.3e-08 BAR_3_WASP_bdg 133 letleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018826_1 2006 MDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 2048 7889999******************************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.28u 0.45s 00:00:02.73 Elapsed: 00:00:00.80 # Mc/sec: 26194.47 // Query: T018826_2 [L=7324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-29 102.1 13.6 2.7e-29 102.1 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region 1.9e-08 34.0 0.4 1.9e-08 34.0 0.4 1.9 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein ------ inclusion threshold ------ 1.9 8.3 15.1 0.025 14.5 1.1 2.3 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 1.2 4.9e-05 0.27 96 143 .. 797 842 .. 784 843 .. 0.87 2 ! 102.1 13.6 4.9e-33 2.7e-29 184 304 .. 881 992 .. 870 993 .. 0.94 3 ? -6.7 13.9 3 1.6e+04 123 210 .. 1042 1132 .. 1013 1139 .. 0.53 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 4.9e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018826_2 797 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 842 689**********************9554.57..89*********9976 PP == domain 2 score: 102.1 bits; conditional E-value: 4.9e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018826_2 881 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 971 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018826_2 972 MNECD-H*KESLFRYEREKAER 992 ****7.55589**********8 PP == domain 3 score: -6.7 bits; conditional E-value: 3 CCDC144C 123 rerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvn 210 + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek++ T018826_2 1042 SQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLE 1132 3334455555555555555555566665554222345555555555555555444444445555555555555555555554444444443 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.8 0.23 1.2e+03 32 65 .. 1072 1105 .. 1049 1118 .. 0.84 2 ! 34.0 0.4 3.4e-12 1.9e-08 185 228 .. 2057 2100 .. 2052 2106 .. 0.92 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.23 BAR_3_WASP_bdg 32 elDlqeveqkveafkkftkkmdesvkellevine 65 l +++v+q +e++++ k ++e++ +l++ +++ T018826_2 1072 LLSMKKVQQECEKLEEDKKMLEEEILNLKTHMEN 1105 467899*********************9998865 PP == domain 2 score: 34.0 bits; conditional E-value: 3.4e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018826_2 2057 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2100 679**************************************998 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 1.1 4.6e-06 0.025 24 94 .. 883 952 .. 879 953 .. 0.95 2 ? -1.7 7.0 0.44 2.4e+03 14 89 .. 1039 1111 .. 1033 1137 .. 0.68 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 4.6e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018826_2 883 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 952 68999********************************************************76.9999986 PP == domain 2 score: -1.7 bits; conditional E-value: 0.44 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX CS Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss.ls 89 +v++q +l ++ e +++k +++++ n++ ++ ++ ++++ kLe+ L++ + +lk++ e+s ls T018826_2 1039 QVESQFDDLMAEKEAVSSKCVNLAKE----NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVeLS 1111 67777777777777777777777777....77777777777777777777777777777777777777777543444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.33u 0.42s 00:00:02.75 Elapsed: 00:00:00.83 # Mc/sec: 25244.24 // Query: T018826_3 [L=7324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-07 28.8 3.0 8.6e-07 28.2 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 3.0 5.3e-11 8.6e-07 145 185 .. 842 882 .. 842 884 .. 0.97 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 5.3e-11 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018826_3 842 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 882 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.16u 0.46s 00:00:02.62 Elapsed: 00:00:00.86 # Mc/sec: 24363.63 // Query: T368418_1 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 3362.65 // Query: T368418_2 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3536.58 // Query: T368418_3 [L=716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 3413.92 // Query: T183031_1 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.44s 00:00:02.36 Elapsed: 00:00:00.87 # Mc/sec: 22028.39 // Query: T183031_2 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.50s 00:00:02.58 Elapsed: 00:00:00.84 # Mc/sec: 22815.12 // Query: T183031_3 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.40s 00:00:02.52 Elapsed: 00:00:00.84 # Mc/sec: 22815.12 // Query: T211428_1 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 1966.25 // Query: T211428_2 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 2135.76 // Query: T211428_3 [L=432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.72 # Mc/sec: 1716.50 // Query: T090175_1 [L=4480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.43s 00:00:02.05 Elapsed: 00:00:00.80 # Mc/sec: 16020.65 // Query: T090175_2 [L=4479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.62 # Mc/sec: 20667.19 // Query: T090175_3 [L=4479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.33s 00:00:01.83 Elapsed: 00:00:00.66 # Mc/sec: 19414.63 // Query: T381573_1 [L=1447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 8116.90 // Query: T381573_2 [L=1446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 6364.25 // Query: T381573_3 [L=1446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 7660.67 // Query: T149445_1 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 2294.27 // Query: T149445_2 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 1887.22 // Query: T149445_3 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 1772.85 // Query: T354543_1 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-41 138.7 5.7 4.6e-41 138.7 5.7 1.7 2 HERV-K_REC Rec (regulator of expression encoded by corf) of 7.1e-06 25.1 1.1 1.3e-05 24.3 1.1 1.3 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 0.77 6.3e+03 9 24 .. 1155 1170 .. 1151 1173 .. 0.84 2 ! 138.7 5.7 5.6e-45 4.6e-41 4 87 .] 1179 1262 .. 1178 1262 .. 0.97 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.77 HERV-K_REC 9 mnkmvtseeqmklpst 24 nk + se q+k+p T354543_1 1155 YNKPIPSEMQIKVPPQ 1170 59999********965 PP == domain 2 score: 138.7 bits; conditional E-value: 5.6e-45 HERV-K_REC 4 plthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 th++nkmv seeqmklpstkkaepptwaqlkkltqla k l+nt+vtqtpe mllaalmivsmv+++v ++s e+a+ e+g+ T354543_1 1179 SSTHQVNKMVISEEQMKLPSTKKAEPPTWAQLKKLTQLAEKSLKNTRVTQTPENMLLAALMIVSMVSTGVSSSSGETAASENGP 1262 569****************************************************************************99986 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 1.1 1.5e-09 1.3e-05 7 48 .. 1113 1153 .. 1109 1155 .. 0.92 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 1.5e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd s+ W +v+++grG cv P +++ ++w+P R ++ T354543_1 1113 WKDNKSKTWET-GKVITWGRGFSCVSPGENQLPVWIPTRHLK 1153 99999****95.79*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 6786.06 // Query: T354543_2 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-26 92.1 0.0 4.2e-26 91.4 0.0 1.3 1 rve Integrase core domain 6.3e-17 61.1 2.7 1.4e-16 60.0 2.7 1.6 1 Integrase_Zn Integrase Zinc binding domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.4 0.0 5.1e-30 4.2e-26 4 118 .. 944 1053 .. 942 1054 .. 0.92 Alignments for each domain: == domain 1 score: 91.4 bits; conditional E-value: 5.1e-30 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dvt+++++++ +++ v +d++s++i+a + + e ++s+v l +a g pe++ +Dng+ y+skaf++fl++++i++++ p++ T354543_2 944 PNALWQMDVTHVPSFGKL--SFVRVTVDTYSHFIWATCQTGE-STSHVKIHLLSYFAVMGV--PEKIKTDNGPGYCSKAFQKFLNQWKITHTTGIPYN 1036 9************66555..**********************.666666666668888887..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q ++++Er+nrtlk++ T354543_2 1037 SQGQAIIERTNRTLKAQ 1053 ***************86 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.0 2.7 1.7e-20 1.4e-16 1 38 [] 890 927 .. 890 927 .. 0.98 Alignments for each domain: == domain 1 score: 60.0 bits; conditional E-value: 1.7e-20 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCqq 38 A+e+H l+H+Na++L++kF it++qA++IVq+C++Cq+ T354543_2 890 AQELHVLTHVNATGLKNKFDITWKQAKNIVQHCAQCQV 927 9***********************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 8384.83 // Query: T354543_3 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-29 99.0 0.1 1.8e-28 97.9 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 2e-25 89.8 0.1 3.2e-25 89.1 0.1 1.3 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 1.8e-22 78.8 0.2 4.8e-22 77.5 0.2 1.7 1 Gag_p10 Retroviral GAG p10 protein 1.3e-07 31.3 0.0 2.1e-07 30.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 3.2e-07 30.5 0.6 5.4e-07 29.8 0.1 1.7 2 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.9 0.1 5.4e-32 1.8e-28 1 65 [. 551 615 .. 551 616 .. 0.98 Alignments for each domain: == domain 1 score: 97.9 bits; conditional E-value: 5.4e-32 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 pqk+++r+d+l+tLNDfQkLlgdINWi p+lgi+t+ +++LF+iLrGd+dl+ +r++T+eA++++ T354543_3 551 PQKIEIRKDTLRTLNDFQKLLGDINWIGPTLGIPTYAMSNLFSILRGDPDLNGKRTITPEATKEI 615 6*************************************************************997 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.1 0.1 9.7e-29 3.2e-25 1 119 [. 358 481 .. 358 482 .. 0.95 Alignments for each domain: == domain 1 score: 89.1 bits; conditional E-value: 9.7e-29 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++ +qygp+sp++++l+d++a++ +p+d+e+l ++ ++s+ l+ +++w+++++e+ +r n+a + ++i++d+llgt + ++++q+ T354543_3 358 MKMLKDIKEGAKQYGPNSPYMRTLLDSIAHGNrlIPYDWEILPKSslSPSQYLQfKTWWIDGVQEQ--VRKNQATyPVVNIDADQLLGTRPnwSTINQQS 455 8******************************999*********9988999****9***********..8888888799*************99999**** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgs 119 +mqn e++eq+ +++l+a+eki+++g+ T354543_3 456 VMQN-EAIEQLGAICLRAWEKIQDPGT 481 ****.*******************986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.5 0.2 1.5e-25 4.8e-22 3 84 .] 46 126 .. 44 126 .. 0.94 Alignments for each domain: == domain 1 score: 77.5 bits; conditional E-value: 1.5e-25 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgke.lkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G+k s+++l++++qt e++cPWFpe+Gtldl++W+k+g + lk qa ++g+ ipl+v++ w++i++ L+ T354543_3 46 ASYLSFIKILLRRGGVKASTENLITLFQTTEQFCPWFPEQGTLDLKDWEKIG-K*LK-QASREGKIIPLTVWNDWAIIKATLE 126 679************************************************9.5656.899*******************985 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.0 6.6e-11 2.1e-07 158 222 .] 486 544 .. 457 544 .. 0.90 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 6.6e-11 ....TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 158 akgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 ++++++++Y+DDil++++++++l + +++ +++ gl+i+ +K++ ++++yLG+++ T354543_3 486 FSDCYIIHYVDDILCAAETRDKLIDFYMFLQTEVANTGLTIASDKIQTS------TPFNYLGMQV 544 389**********************************************......8******985 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.1 0.0 4.5 1.5e+04 70 107 .. 407 442 .. 406 452 .. 0.69 2 ! 29.8 0.1 1.6e-10 5.4e-07 2 79 .. 761 825 .. 760 829 .. 0.86 Alignments for each domain: == domain 1 score: -4.1 bits; conditional E-value: 4.5 -HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHH CS RNase_H 70 SkYvvkgitqwvhrwkknawkttseqkpvknkelaell 107 S+Y+ t w+ + +++ +k++++ pv+n + +ll T354543_3 407 SQYLQF-KTWWIDGVQEQVRKNQATY-PVVNIDADQLL 442 556555.4667777777777777776.89886666665 PP == domain 2 score: 29.8 bits; conditional E-value: 1.6e-10 .SEEEEEEEEEECTTTEEEEEEEECTT..E.EEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHC CS RNase_H 2 kavvvYtDGsclgnsgeggagavlykegar.nisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitq 79 +a++v+tDG ++ g+++++ + ++ i+++++ +++raEL Av+ +L++ ++ +ni++DS Y+v+ +t+ T354543_3 761 NALTVFTDGFSN-----GKVAYTGP---KE*VIETQYH---SAQRAELVAVTSVLQD--FNQPINIVSDSAYIVQ-ATK 825 678999999987.....77777666...3799999997...****************..999************9.554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 7816.37 // Query: T353223_1 [L=1507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 6340.10 // Query: T353223_2 [L=1507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 6340.10 // Query: T353223_3 [L=1506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-06 27.2 6.1 8.3e-06 26.3 6.1 1.5 1 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.3 6.1 5.1e-10 8.3e-06 1 77 [] 301 377 .. 301 377 .. 0.88 Alignments for each domain: == domain 1 score: 26.3 bits; conditional E-value: 5.1e-10 EEEEEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTT..EEEEEEEEEEESCCGGCCCCCCSTSECEEEEEEEESSTTTT CS UPAR_LY6 1 CysClge.ssesClpeveCpeadsvCvsatlklqagn..lettlvvkgCaresscrlladfinigsikvsesccqsdlcn 77 Cy Cl + + sC+ +Cp+ d+vCvs+++++ ++ e++l +C ++ +ll + ++ +++ ++scc++dlcn T353223_3 301 CYRCLAVlEGASCSVV-SCPFLDGVCVSQKVSVFGSKvrGENKLSLLSCQKDVGFPLL--KLTSAVVDSQISCCKGDLCN 377 ****************.***************99988444567788899976666666..69999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 7062.97 // Query: T235977_1 [L=4595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 747 (0.0458114); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.35s 00:00:02.00 Elapsed: 00:00:00.67 # Mc/sec: 19620.17 // Query: T235977_2 [L=4594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.7 6.6 12.8 1.5 9.0 3.8 2.4 2 Bactofilin Polymer-forming cytoskeletal Domain annotation for each model (and alignments): >> Bactofilin Polymer-forming cytoskeletal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 3.8 9.3e-05 1.5 15 90 .. 954 1023 .. 937 1033 .. 0.91 2 ? 2.3 1.6 0.012 1.9e+02 11 62 .. 1070 1118 .. 1059 1120 .. 0.71 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 9.3e-05 Bactofilin 15 vegdlridGkveGdieakgklvvgeggkveGnikaeevvvaGtvkGnveaeekvelkktakveGdikaksleieeg 90 + g++ ++G v G+++ + +v+++g v G ++ ++v+++G v G+v+ ++++++ v G+++ +++++e g T235977_2 954 TPGQVSLEGGVGGSVTPE---QVSPEGDVGGPVTPGQVSLEGGVGGSVTPG---QVSPEGGVGGTVTPGQVSLEGG 1023 4589999********888...8***************************99...9999*********999999886 PP == domain 2 score: 2.3 bits; conditional E-value: 0.012 Bactofilin 11 GelevegdlridGkveGdieakgklvvgeggkveGnikaeevvvaGtvkGnv 62 G+ + g++ ++G v G+++ + +v+ +g+v G ++ ++v+ +G v G+v T235977_2 1070 GDSVTPGQVSLEGGVGGSVTPG---QVSLEGSVGGPVTPGQVSPEGGVGGSV 1118 5555667777777777777555...455577778888777777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.34s 00:00:01.75 Elapsed: 00:00:00.67 # Mc/sec: 19615.90 // Query: T235977_3 [L=4594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 992 (0.0608365); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.44s 00:00:02.34 Elapsed: 00:00:00.76 # Mc/sec: 17292.96 // Query: T257609_1 [L=2163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.75 # Mc/sec: 8250.63 // Query: T257609_2 [L=2162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 8963.93 // Query: T257609_3 [L=2162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 453 (0.0277812); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.59 # Mc/sec: 10483.24 // Query: T173654_1 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3883.22 // Query: T173654_2 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 4644.64 // Query: T173654_3 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 3878.54 // Query: T089137_1 [L=2780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-14 53.8 0.0 2.3e-14 53.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 4.4e-06 26.4 1.0 1.2e-05 25.0 1.0 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.029 13.9 2.7 0.065 12.8 2.7 1.6 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.1 12.3 1.1 0.33 10.7 1.1 1.9 1 zf-CCHC_2 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.3 0.0 5.7e-18 2.3e-14 133 210 .. 2506 2583 .. 2505 2584 .. 0.98 Alignments for each domain: == domain 1 score: 53.3 bits; conditional E-value: 5.7e-18 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089137_1 2506 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 2583 79*************************************************************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 1.0 2.9e-09 1.2e-05 2 17 .. 2633 2648 .. 2632 2649 .. 0.94 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 2.9e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089137_1 2633 SCFKCQKSGHWAKECP 2648 6**************9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 2.7 1.6e-05 0.065 1 18 [. 2630 2647 .. 2630 2648 .. 0.96 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.6e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089137_1 2630 PSGSCFKCQKSGHWAKEC 2647 7999************** PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 1.1 8.1e-05 0.33 6 20 .. 2634 2648 .. 2633 2649 .. 0.94 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 8.1e-05 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C C+k GH+ ++CP T089137_1 2634 CFKCQKSGHWAKECP 2648 888************ PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.68 # Mc/sec: 11695.75 // Query: T089137_2 [L=2779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.34s 00:00:01.52 Elapsed: 00:00:00.81 # Mc/sec: 9815.12 // Query: T089137_3 [L=2779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.77 # Mc/sec: 10325.00 // Query: T277151_1 [L=2485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 12257.18 // Query: T277151_2 [L=2485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.65 # Mc/sec: 10937.17 // Query: T277151_3 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 12467.20 // Query: T195978_1 [L=2876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 11118.58 // Query: T195978_2 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:00.70 # Mc/sec: 11749.84 // Query: T195978_3 [L=2875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 13708.14 // Query: T236384_1 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 983 (0.0602846); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.39s 00:00:02.41 Elapsed: 00:00:00.69 # Mc/sec: 3565.67 // Query: T236384_2 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 923 (0.0566049); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.43s 00:00:01.93 Elapsed: 00:00:00.70 # Mc/sec: 3514.73 // Query: T236384_3 [L=859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1245 (0.0763523); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.44s 00:00:02.17 Elapsed: 00:00:00.72 # Mc/sec: 3413.13 // Query: T261640_1 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5780.04 // Query: T261640_2 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 5900.46 // Query: T261640_3 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.70 # Mc/sec: 4046.03 // Query: T139348_1 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 800 (0.0490617); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 1829.20 // Query: T139348_2 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 755 (0.046302); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 1886.36 // Query: T139348_3 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 537 (0.0329327); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 1942.60 // Query: T368438_1 [L=594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 2880.23 // Query: T368438_2 [L=594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 2655.21 // Query: T368438_3 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 2609.96 // Query: T125887_1 [L=1077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 5135.19 // Query: T125887_2 [L=1077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 4531.05 // Query: T125887_3 [L=1076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.038 12.8 0.4 0.053 12.3 0.4 1.1 1 MdoG Periplasmic glucan biosynthesis protein, MdoG Domain annotation for each model (and alignments): >> MdoG Periplasmic glucan biosynthesis protein, MdoG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.4 3.3e-06 0.053 301 324 .. 97 120 .. 91 136 .. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 3.3e-06 --TTT-GGG--EEEEEESS---EE CS MdoG 301 qDlearYekRPslwvepkgdwgkG 324 qD+e+ +e+RPs w ep++dwg+ T125887_3 97 QDMETGWEQRPSQWPEPSQDWGAE 120 8*********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4809.77 // Query: T166953_1 [L=2728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.40s 00:00:01.74 Elapsed: 00:00:00.78 # Mc/sec: 10005.57 // Query: T166953_2 [L=2727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.43s 00:00:01.65 Elapsed: 00:00:00.79 # Mc/sec: 9875.30 // Query: T166953_3 [L=2727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 12002.28 // Query: T322579_1 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 5145.35 // Query: T322579_2 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 5141.20 // Query: T322579_3 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 5542.86 // Query: T052749_1 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 3996.36 // Query: T052749_2 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 3607.82 // Query: T052749_3 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 3931.47 // Query: T094002_1 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 4651.96 // Query: T094002_2 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.083 13.2 8.7 0.18 12.1 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 8.7 1.1e-05 0.18 8 50 .. 588 630 .. 587 637 .. 0.88 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.1e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094002_2 588 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 630 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 703 (0.043113); expected 326.1 (0.02) Passed bias filter: 328 (0.0201153); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.73 # Mc/sec: 4397.06 // Query: T094002_3 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 4863.41 // Query: T156689_1 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 8591.03 // Query: T156689_2 [L=2011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.81 # Mc/sec: 7102.63 // Query: T156689_3 [L=2011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.76 # Mc/sec: 7569.91 // Query: T056139_1 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-07 29.0 0.1 1e-06 28.3 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.3 0.1 6.3e-11 1e-06 6 56 .. 1640 1691 .. 1632 1702 .. 0.83 Alignments for each domain: == domain 1 score: 28.3 bits; conditional E-value: 6.3e-11 .S-EEE......-THHHHCTB--.........-------HHHH......... CS RVT_1 6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav.e 56 ++++Rp+sl+++ k+lnk++ak+++++++kl +++q+gf pg + + + + T056139_1 1640 KKNFRPMSLMNIGTKILNKILAKQIQQHIKKLNHHDQVGFIPGMQGWFPIcK 1691 589***************************************9766555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.81 # Mc/sec: 9769.20 // Query: T056139_2 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-73 246.6 11.7 1.6e-71 241.0 11.7 2.4 1 Transposase_22 L1 transposable element 4e-09 36.2 0.0 6.5e-09 35.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.004 17.2 1.5 0.004 17.2 1.5 1.9 2 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.008 15.9 4.5 0.027 14.3 0.9 2.6 2 HSBP1 Heat shock factor binding protein 1 ------ inclusion threshold ------ 0.1 13.0 0.7 0.27 11.6 0.7 1.7 1 NPV_P10 Nucleopolyhedrovirus P10 protein 0.31 11.1 2.6 5.1 7.1 0.4 2.4 2 COG5 Golgi transport complex subunit 5 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.0 11.7 5.8e-75 1.6e-71 16 299 .. 762 1017 .. 754 1024 .. 0.92 Alignments for each domain: == domain 1 score: 241.0 bits; conditional E-value: 5.8e-75 XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.................. CS Transposase_22 16 ksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnk 104 k +++ +P+k+++s Pa e+++ +++f++l + ++++ + ++lk + s++ke + k ++e + ek+ + T056139_2 762 KNQNAFSPPKDHNSLPAR--EQNWTENEFDKLTEIGFRRwliTNSSKLKGHVLSQCKEAKnLDKRLDELLTRLTS--LEKN----------IN 840 6789999**********9..******************9555688899999999999987566666665544444..1222..........24 PP XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES- CS Transposase_22 105 ellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGv 197 +l+elk + el + s++srid+ ee++s +ed+++ei+ e k rekr+k +e+slq+i+d++k Pnl liGv T056139_2 841 DLMELKNTAWELGEAYT------------------SINSRIDQPEEKISEIEDQLNEINCEDKIREKRMKGNEKSLQEIWDYMKTPNLYLIGV 915 79******999998887..................********************************************************** PP ---TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HH CS Transposase_22 198 desedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsae 290 es+ e+++klen+l+ +i+enfPnl+ +a ++iqe+ rtP+r++ k a++rhii+r+tk ++k+k+l+a+ ekG v kGkPi lt d+sae T056139_2 916 CESDRENGTKLENTLQGVIQENFPNLAIQAIIQIQELERTPQRYSLKIATPRHIIIRFTKSEMKEKMLRAATEKGWVIHKGKPITLTVDISAE 1008 ********************************************************************************************* PP HHHHHHHHH CS Transposase_22 291 tlkarrewt 299 tl+arrew T056139_2 1009 TLQARREWE 1017 ********5 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 2.4e-12 6.5e-09 154 222 .] 1796 1879 .. 1776 1879 .. 0.86 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 2.4e-12 -T......TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 154 lrkrakgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +r+ ++v+l+++aDD++++ +++ q+ll+ ++++ k sg+kin +K++++l+ s+ ++++kyLG++l T056139_2 1796 IRR--EEVKLSLFADDMILYLENPIIsTQKLLKLLSRFSKVSGYKINVQKSQAFLYtnnrqieiqimSElpltiATKKIKYLGIQL 1879 344..69****************5555***************************99999888877661156778*********986 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 1.5 1.5e-06 0.004 29 100 .. 809 880 .. 789 883 .. 0.93 2 ? -3.5 0.3 4 1.1e+04 61 88 .. 1495 1522 .. 1491 1529 .. 0.60 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.5e-06 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 29 delleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++l+ ++ ++l ++l+el ++ +l k+I +++ k+ a el + +++ ++++ e++ +e+e++l+++ T056139_2 809 GHVLSQCKEAKNLDKRLDELLTRLTSLEKNINDLMELKNTAWELGEAYTSINSRIDQPEEKISEIEDQLNEI 880 578888999************************************************************998 PP == domain 2 score: -3.5 bits; conditional E-value: 4 CCCCTTS-TCCCCCCCHHHHHHHHHHHH CS Seryl_tRNA_N 61 kakkkkedaeeliaevkelkeelkalea 88 k+k++k++++ ++++ e+ ++ ++++ T056139_2 1495 KKKREKNQIDTIKKDKGEITTDPTETQT 1522 4555556666666666666666555555 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.9 9.9e-06 0.027 26 48 .. 822 844 .. 818 847 .. 0.90 2 ? 2.2 0.1 0.06 1.6e+02 24 46 .. 858 880 .. 855 883 .. 0.82 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 9.9e-06 HSBP1 26 lsriDdMssriDdLEksiadlmt 48 +r+D++ +r+ +LEk+i+dlm+ T056139_2 822 DKRLDELLTRLTSLEKNINDLME 844 58********************7 PP == domain 2 score: 2.2 bits; conditional E-value: 0.06 HSBP1 24 qilsriDdMssriDdLEksiadl 46 +i sriD+ +++i ++E +++++ T056139_2 858 SINSRIDQPEEKISEIEDQLNEI 880 78899999999999999888775 PP >> NPV_P10 Nucleopolyhedrovirus P10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.7 0.0001 0.27 13 66 .. 818 878 .. 810 888 .. 0.86 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.0001 NPV_P10 13 ikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaelet.......kvenIqdiLn 66 k++d+++d l ++++++++n++d+ el++ ++ ++ +++++ k+++I+d Ln T056139_2 818 AKNLDKRLDELLTRLTSLEKNINDLMELKNTAWELGEAYTSINSridqpeeKISEIEDQLN 878 4899*********************99999999999999999988888998*******999 PP >> COG5 Golgi transport complex subunit 5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 0.4 0.0019 5.1 52 112 .. 820 880 .. 811 885 .. 0.92 2 ? 3.4 0.1 0.028 75 28 69 .. 1862 1903 .. 1844 1908 .. 0.86 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0019 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHH CS COG5 52 litsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrl 112 ++ ++ +eLl++l++ ++ + l elk +L ++y ++s + +p e++++ + +l+ + T056139_2 820 NLDKRLDELLTRLTSLEKNINDLMELKNTAWELGEAYTSINSRIDQPEEKISEIEDQLNEI 880 56678899**********************************************9999877 PP == domain 2 score: 3.4 bits; conditional E-value: 0.028 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS COG5 28 eldlstplkrlnydiqeldkrlrqlitsnhleLlehlsksks 69 el l ++ k+++y +l++ +++l ++n+++Ll+++++ ++ T056139_2 1862 ELPLTIATKKIKYLGIQLTRDVKDLFKENYKPLLKEIREDTN 1903 667788999****9999*******************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.46u 0.41s 00:00:01.87 Elapsed: 00:00:00.88 # Mc/sec: 8992.11 // Query: T056139_3 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-22 78.2 0.0 1.1e-21 77.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 2.6e-06 27.5 0.0 4.7e-06 26.7 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.015 15.0 0.2 0.038 13.7 0.2 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.3 0.0 1.9e-25 1.1e-21 63 156 .. 1700 1793 .. 1682 1800 .. 0.92 Alignments for each domain: == domain 1 score: 77.3 bits; conditional E-value: 1.9e-25 CCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS RVT_1 63 kkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrk 156 ++++k+++++++D +kaFd++++++ l++l++++++ +++++i++++ ++++++r+ng++ e + k+g++qG++lSPllfn++++ l r +++ T056139_3 1700 ESMTKNHMIISIDAEKAFDKIQHPFMLKTLNKLGIDGTFHKIIRDIYDKPTANIRLNGQKLEAFHLKTGTRQGCPLSPLLFNIVLEVLARAIKQ 1793 467899*****************************************************99*****************************9998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.0 8.7e-10 4.7e-06 1 87 [. 1126 1288 .. 1126 1380 .. 0.74 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 8.7e-10 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH........................EEEEEEESSSTTSSEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla........................dadaskfgtgkgqggvavls 70 lt N+n+ ++++ ++ +la+++k++d+ v ++qE++ ++ +l+ ++d+++++++k+++g +++ T056139_3 1126 LTLNINE----LNDPIKRHRLANWIKNQDPSVCCIQETHLMCKDTHKLKIkgwrktyqangkhrkavvaildsdKTDFKSTKHKKDKEGHYIMV 1215 6899999....8889999*******************999998888777798888888888888888888887767777777777778888888 PP CSEEEEE...............................EEEEEE-SS.........................- CS xxxxxxx...............................xxxxxxxxx.........................x RF Exo_endo_phos 71 rfpltsl...............................vivlGDfNa.........................r 87 + + ++ i++GDfN+ T056139_3 1216 KDQCNRKs*ls*iymhpiqeqpds*skfletckktdshTIIVGDFNTplsildrstrqkinkdiqdlnsaleQ 1288 88887779***************************************66644444444444433333333330 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.2 6.9e-06 0.038 23 118 .. 1244 1347 .. 1241 1348 .. 0.74 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 6.9e-06 Exo_endo_phos_2 23 ekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll.nllkeg.ptfeseng....ssiiDltltsdnlaks..le 105 +++++++s ++ii+GDfN + + +++++ ++ ++L + le+ +l + +l+ + +++ ++ s i +l s+ l+ + T056139_3 1244 LETCKKTDS-HTIIVGDFNTPLSILDRSTRQKiNKDIQDLNSALEQVGLIDIsRTLHPK*TEYAFFSAphssYSKIGSILGSKILLSKckIM 1334 344555554.9**************99888879***************99773334444555532222223479999999999999998755 PP Exo_endo_phos_2 106 leeedlgSDHrpi 118 + +++SDH++i T056139_3 1335 EIIANSLSDHSAI 1347 5567999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 10276.70 // Query: T352940_1 [L=4364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.76 # Mc/sec: 16427.19 // Query: T352940_2 [L=4363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.41s 00:00:02.06 Elapsed: 00:00:00.81 # Mc/sec: 15409.63 // Query: T352940_3 [L=4363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.42s 00:00:01.95 Elapsed: 00:00:00.88 # Mc/sec: 14183.87 // Query: T040398_1 [L=91] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (91 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.59 # Mc/sec: 441.25 // Query: T040398_2 [L=90] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (90 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.56 # Mc/sec: 459.78 // Query: T040398_3 [L=90] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (90 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 17 (0.00104256); expected 326.1 (0.02) Passed bias filter: 14 (0.00085858); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.56 # Mc/sec: 451.71 // Query: T090236_1 [L=5062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.44s 00:00:02.58 Elapsed: 00:00:00.87 # Mc/sec: 16645.43 // Query: T090236_2 [L=5061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.44s 00:00:02.43 Elapsed: 00:00:00.86 # Mc/sec: 16835.65 // Query: T090236_3 [L=5061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 787 (0.0482644); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.61u 0.46s 00:00:03.07 Elapsed: 00:00:00.80 # Mc/sec: 18098.33 // Query: T302103_1 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1280 (0.0784987); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.43s 00:00:02.28 Elapsed: 00:00:00.82 # Mc/sec: 6119.39 // Query: T302103_2 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 748 (0.0458727); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.33s 00:00:01.76 Elapsed: 00:00:00.78 # Mc/sec: 6433.20 // Query: T302103_3 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1131 (0.069361); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.49s 00:00:02.65 Elapsed: 00:00:00.89 # Mc/sec: 5638.09 // Query: T275912_1 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 918 (0.0562983); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 84 (0.00515148); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.49s 00:00:01.79 Elapsed: 00:00:00.87 # Mc/sec: 2643.80 // Query: T275912_2 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1366 (0.0837728); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 263 (0.016129); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.43s 00:00:02.03 Elapsed: 00:00:00.81 # Mc/sec: 2839.64 // Query: T275912_3 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1016 (0.0623084); expected 326.1 (0.02) Passed bias filter: 421 (0.0258187); expected 326.1 (0.02) Passed Vit filter: 221 (0.0135533); expected 16.3 (0.001) Passed Fwd filter: 60 (0.00367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.35s 00:00:02.13 Elapsed: 00:00:00.89 # Mc/sec: 2581.18 // Query: T373350_1 [L=3658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.75 # Mc/sec: 13953.22 // Query: T373350_2 [L=3658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.78 # Mc/sec: 13416.56 // Query: T373350_3 [L=3658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.42s 00:00:01.80 Elapsed: 00:00:00.75 # Mc/sec: 13953.22 // Query: T112513_1 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 8539.96 // Query: T112513_2 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.42s 00:00:01.51 Elapsed: 00:00:00.82 # Mc/sec: 7706.80 // Query: T112513_3 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-08 34.3 0.0 3.5e-08 33.5 0.0 1.3 1 rve Integrase core domain 4.6e-08 32.7 0.0 8e-08 31.9 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.0 4.3e-12 3.5e-08 17 117 .. 565 658 .. 559 660 .. 0.82 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 4.3e-12 rve 17 ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 +p+++g+ ++l+ id++ r++ +++ t+++++e+ + p + sD+g+ +t+k++ +++ +gi++s++ p++p+ G++E n++ k T112513_3 565 LPSWKGQRFVLTEIDTYCRYACN-----ASAKTTICGVMECLIHCHSI--PYSIASDQGTPFTAKEVWQWAHAHGIHLSYHVPHHPEAAGLIEEWNGLSK 657 45666667777777777665543.....33456699999988888888..9*********************************************9987 PP rve 117 d 117 T112513_3 658 S 658 6 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.0 9.8e-12 8e-08 8 110 .. 729 831 .. 723 850 .. 0.89 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 9.8e-12 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECG CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilta 107 + + s+g+++ + ++++ get+++p++ ++ p g+ + +lp+S a+kg++v++g+id y+ +++ l n +k++ ++gd + +L+ ++ + T112513_3 729 PMTLHSVGLEVLIPVGIMLPSGETTTIPLNWKLRFPPGHFGPLLPSSPQAKKGVTVLTGLIDLNYQDAISLLLHNGGKEEYVWNTGDPLGHLLTLPCPVI 828 566678999999999******************************************************************************9999776 PP EEE CS dUTPase 108 ele 110 +++ T112513_3 829 KVN 831 655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.80 # Mc/sec: 7899.47 // Query: T368565_1 [L=1559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 504 (0.0309089); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.41s 00:00:01.51 Elapsed: 00:00:00.74 # Mc/sec: 6027.07 // Query: T368565_2 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 565 (0.0346498); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.68 # Mc/sec: 6554.67 // Query: T368565_3 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-13 49.0 44.2 1.6e-08 34.7 15.5 4.6 4 Cornifin Cornifin (SPRR) family Domain annotation for each model (and alignments): >> Cornifin Cornifin (SPRR) family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.7 15.5 9.7e-13 1.6e-08 23 121 .. 17 115 .. 3 118 .. 0.65 2 ! 30.0 20.7 2.8e-11 4.5e-07 25 124 .. 107 206 .. 105 219 .. 0.55 3 ? -2.0 0.6 0.21 3.5e+03 8 27 .. 340 359 .. 337 379 .. 0.78 4 ? -4.9 6.3 1 1.6e+04 7 62 .. 503 563 .. 495 583 .. 0.55 Alignments for each domain: == domain 1 score: 34.7 bits; conditional E-value: 9.7e-13 Cornifin 23 epchskvpepcntkvpepcqtkvpepcqtkvpepcqtkvpepcqtkvpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvpepc 121 c+ vp c+ vp c vp c + p c + p c + p c + p c+i vp c +p c +++p +c ++ p c +v+p c T368565_3 17 GRCDIVVPGRCDIVVPGRCDIVVPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDIVVPGRCDLVLPGRCDPVLPGRCDPVLPGRCDPVLPGRC 115 346666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777666 PP == domain 2 score: 30.0 bits; conditional E-value: 2.8e-11 Cornifin 25 chskvpepcntkvpepcqtkvpepcqtkvpepcqtkvpepcqtkvpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvpepcpst 124 c++ +p c+ vp c + p c + p c + p c + p c + p c++ p c + +p c +++p +c ++ p c +v+p c + T368565_3 107 CDPVLPGRCDIVVPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPMLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPVLPGRCDPV 206 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555442 PP == domain 3 score: -2.0 bits; conditional E-value: 0.21 Cornifin 8 psqpppqeifvpktkepchs 27 p ppp ++ ++ p h T368565_3 340 PGMPPPSSTCMDRVSSPRHL 359 77899999999999999875 PP == domain 4 score: -4.9 bits; conditional E-value: 1 Cornifin 7 qpsqpppqeifvpktke..pchskvpepcntkvpepcqtkvpe....pcqtkvpepcqtkvp 62 +p qppp + p+ pc s + + + p++ p p++ p p++t p T368565_3 503 RPHQPPPTSPSSPHSLWplPCCS-LSCKALPARWAPGRENLPSgpghPGEHFNPHPTHTTHP 563 57888888888877654114554.33333334444555444422111333334444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 6105.72 // Query: T222369_1 [L=2422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 10341.69 // Query: T222369_2 [L=2422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.81 # Mc/sec: 8554.23 // Query: T222369_3 [L=2422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.63 # Mc/sec: 10998.30 // Query: T188412_1 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1238 (0.075923); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.38u 0.38s 00:00:02.76 Elapsed: 00:00:00.87 # Mc/sec: 14096.99 // Query: T188412_2 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 752 (0.046118); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.30s 00:00:01.84 Elapsed: 00:00:00.61 # Mc/sec: 20105.54 // Query: T188412_3 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1168 (0.0716301); expected 326.1 (0.02) Passed bias filter: 509 (0.0312155); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.32s 00:00:02.11 Elapsed: 00:00:00.61 # Mc/sec: 20105.54 // Query: T277490_1 [L=2905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.53 # Mc/sec: 15680.59 // Query: T277490_2 [L=2904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.53 # Mc/sec: 15675.19 // Query: T277490_3 [L=2904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.53 # Mc/sec: 15675.19 // Query: T138086_1 [L=1264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 7232.18 // Query: T138086_2 [L=1264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 7232.18 // Query: T138086_3 [L=1264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 7232.18 // Query: T094036_1 [L=1179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.084 13.1 8.7 0.19 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.19 8 50 .. 645 687 .. 644 694 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094036_1 645 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 687 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 747 (0.0458114); expected 326.1 (0.02) Passed bias filter: 346 (0.0212192); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 6745.84 // Query: T094036_2 [L=1179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.47 # Mc/sec: 7176.42 // Query: T094036_3 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 5435.58 // Query: T227237_1 [L=2371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0018 18.7 1.6 0.0033 17.8 1.6 1.4 1 DUF1117 Protein of unknown function (DUF1117) Domain annotation for each model (and alignments): >> DUF1117 Protein of unknown function (DUF1117) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 1.6 2e-07 0.0033 2 29 .. 1642 1669 .. 1641 1744 .. 0.80 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 2e-07 DUF1117 2 GltiWRLPGGGfAvGRfsggrregerel 29 Glt+WR+PGGG vG g+r + r l T227237_1 1642 GLTVWRVPGGGAGVGQRDGARGKTSRSL 1669 9********************9999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.55 # Mc/sec: 12332.78 // Query: T227237_2 [L=2371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 683 (0.0418864); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 9420.87 // Query: T227237_3 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 9040.22 // Query: T172358_1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 2737.52 // Query: T172358_2 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.66 # Mc/sec: 2405.70 // Query: T172358_3 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 2480.88 // Query: T173105_1 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 1003.43 // Query: T173105_2 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1139.48 // Query: T173105_3 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.62 # Mc/sec: 1084.35 // Query: T148451_1 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6778.32 // Query: T148451_2 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.70 # Mc/sec: 6003.66 // Query: T148451_3 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 6889.44 // Query: T172462_1 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 6325.18 // Query: T172462_2 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:00.69 # Mc/sec: 6691.85 // Query: T172462_3 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 6592.17 // Query: T164246_1 [L=1720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.67 # Mc/sec: 7344.22 // Query: T164246_2 [L=1720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 7236.22 // Query: T164246_3 [L=1720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 7810.52 // Query: T200706_1 [L=1617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-13 51.2 0.0 2.1e-13 50.6 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.6 0.0 1.3e-17 2.1e-13 6 139 .. 399 527 .. 396 530 .. 0.87 Alignments for each domain: == domain 1 score: 50.6 bits; conditional E-value: 1.3e-17 EEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHH CS RNase_H 6 vYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelae 105 +YtDGs++g +a av ++ ++i ++++ q+ + aEL Av +++ + + + ++i S v++g+t w+ +wk ++ +q p+ + +++ T200706_1 399 WYTDGSSRGAITAWTAVAVQPST--DTIWFETRCGQSSQWAELRAVWMVITK--EVTLMVICINSWVVYQGLTLWLTTWKIQKL-LVGHQ-PIWGQATWQ 492 8*****99765555555555544..7999999999****************9..889999*******************99888.55566.9******** PP HHHHCHCSSEEEEEE-SCCSSS..CHHHHHHHHHHH CS RNase_H 106 llkelakkkkvqlkhvkgHaGd..pkgNemaDrlAk 139 l e+ ++k+v++ hv gH p gN +aD lAk T200706_1 493 DLWEMGHQKQVTVYHVSGHMPLatP-GNDEADALAK 527 *******************766546.*********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 6424.95 // Query: T200706_2 [L=1617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 7116.86 // Query: T200706_3 [L=1616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 14.1 0.0 0.066 13.3 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 4e-06 0.066 4 79 .. 603 674 .. 602 675 .. 0.89 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 4e-06 rve 4 pgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseyt 79 p +wq+D+ +++ + +g++++l+ +d++++l++++ ++ d++++i++l+ + +g+ p++v + + + +t T200706_3 603 PLTRWQIDYIgPLP--KSQGYTHVLTDVDTATGLLFTYTCRVA-DQQNTIQALKYLCPLYGH--PLAVETERRTHFT 674 7789******6666..8888***********************.**********99999998..8998888777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.75 # Mc/sec: 6164.14 // Query: T051157_1 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1011 (0.0620017); expected 326.1 (0.02) Passed bias filter: 370 (0.022691); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 3503.42 // Query: T051157_2 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 3300.32 // Query: T051157_3 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 652 (0.0399853); expected 326.1 (0.02) Passed bias filter: 230 (0.0141052); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.74 # Mc/sec: 3077.33 // Query: T103725_1 [L=3418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:00.76 # Mc/sec: 12866.21 // Query: T103725_2 [L=3418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.057 13.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.35 11.3 5.0 0.7 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 9.8 12.3 0.75 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.3 9.1 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3.1 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.4e-145 2.9e-142 1 368 [] 2973 3308 .. 2973 3308 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103725_2 2973 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3058 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103725_2 3059 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3115 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103725_2 3116 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3208 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103725_2 3209 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3301 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103725_2 3302 QLLQNHA 3308 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.8e-05 0.057 1 72 [. 3343 3412 .. 3343 3417 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103725_2 3343 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3412 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2997 3120 .. 2963 3127 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103725_2 2997 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3090 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103725_2 3091 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3120 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.4e-05 0.11 3 94 .. 3038 3127 .. 3036 3129 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.4e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103725_2 3038 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3127 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.7 3 95 .. 3024 3125 .. 3023 3127 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103725_2 3024 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3118 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103725_2 3119 QEIWDYV 3125 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00037 0.75 30 124 .. 3026 3120 .. 3022 3127 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00037 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103725_2 3026 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3120 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.6e+03 77 96 .. 1048 1062 .. 1034 1065 .. 0.43 2 ? 15.4 2.1 7.1e-06 0.014 44 96 .. 3031 3083 .. 3024 3089 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103725_2 1048 SKKKKRKKERKKR-----KK 1062 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7.1e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103725_2 3031 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3083 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3056 3115 .. 3036 3123 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103725_2 3056 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3115 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 919 (0.0563596); expected 326.1 (0.02) Passed bias filter: 365 (0.0223844); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.80u 0.46s 00:00:02.26 Elapsed: 00:00:00.81 # Mc/sec: 12072.00 // Query: T103725_3 [L=3417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 14590.23 // Query: T138215_1 [L=13629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.98u 0.52s 00:00:04.50 Elapsed: 00:00:01.04 # Mc/sec: 37490.63 // Query: T138215_2 [L=13628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.86u 0.57s 00:00:05.43 Elapsed: 00:00:01.41 # Mc/sec: 27650.63 // Query: T138215_3 [L=13628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.98u 0.53s 00:00:04.51 Elapsed: 00:00:01.11 # Mc/sec: 35123.78 // Query: T073197_1 [L=1329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 5849.30 // Query: T073197_2 [L=1329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.74 # Mc/sec: 5137.90 // Query: T073197_3 [L=1328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.73 # Mc/sec: 5204.36 // Query: T143022_1 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 3887.91 // Query: T143022_2 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1348 (0.082669); expected 326.1 (0.02) Passed bias filter: 339 (0.0207899); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 3248.81 // Query: T143022_3 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1718 (0.10536); expected 326.1 (0.02) Passed bias filter: 410 (0.0251441); expected 326.1 (0.02) Passed Vit filter: 275 (0.016865); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.40s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 3204.90 // Query: T052045_1 [L=766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 847 (0.0519441); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.77 # Mc/sec: 2845.97 // Query: T052045_2 [L=766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1180 (0.072366); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 3270.74 // Query: T052045_3 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1307 (0.0801545); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 3126.48 // Query: T069602_1 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 3096.43 // Query: T069602_2 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-18 65.0 0.2 3.9e-18 65.0 0.2 2.3 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.5 0.045 7.4e+02 7 35 .. 232 259 .. 229 260 .. 0.73 2 ! 65.0 0.2 2.4e-22 3.9e-18 9 60 .. 361 409 .. 360 411 .. 0.97 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.045 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltV 35 +q +k+ +++ + k el++ k+m +V T069602_2 232 TPSQFKKKERKKESFAK-ELRALKMMSIV 259 45677777888888887.59999999887 PP == domain 2 score: 65.0 bits; conditional E-value: 2.4e-22 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa 60 aqWl +e+p+++pk hqk vm+tVwWsa++li+y f +p+etitse+Ya T069602_2 361 AQWLGPEEAPQHFPK---HQKQVMVTVWWSAASLIHYGFPNPSETITSEKYA 409 7*************7...8********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 2467.47 // Query: T069602_3 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 2676.57 // Query: T198755_1 [L=1408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 6197.00 // Query: T198755_2 [L=1407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 6492.24 // Query: T198755_3 [L=1407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.70 # Mc/sec: 5750.27 // Query: T353462_1 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 313 (0.0191954); expected 326.1 (0.02) Passed Vit filter: 149 (0.00913774); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.43s 00:00:02.28 Elapsed: 00:00:00.96 # Mc/sec: 5635.24 // Query: T353462_2 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1218 (0.0746964); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.78 # Mc/sec: 6935.68 // Query: T353462_3 [L=1890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1260 (0.0772722); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.65 # Mc/sec: 8318.41 // Query: T259178_1 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.50 # Mc/sec: 9658.16 // Query: T259178_2 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.47 # Mc/sec: 10274.64 // Query: T259178_3 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.49 # Mc/sec: 9855.27 // Query: T051594_1 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 9743.99 // Query: T051594_2 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.47 # Mc/sec: 10365.94 // Query: T051594_3 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.50 # Mc/sec: 9743.99 // Query: T007016_1 [L=7980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.32s 00:00:01.91 Elapsed: 00:00:00.56 # Mc/sec: 40051.62 // Query: T007016_2 [L=7979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-12 45.6 0.0 7.6e-12 45.1 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.1 0.0 4.7e-16 7.6e-12 170 241 .. 96 166 .. 92 167 .. 0.97 Alignments for each domain: == domain 1 score: 45.1 bits; conditional E-value: 4.7e-16 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS-HHHHHHHHHHHHHHHHHHCTS--EEEE--C CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeedeefeeiaevinaaleelfeegdkevtiiaEpG 241 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + +fee a+vi+aal + +e + v++iaEpG T007016_2 96 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGPKFEELARVISAALAQDLPE-ERGVKVIAEPG 166 789***********************************9********************8.9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.63u 0.34s 00:00:01.97 Elapsed: 00:00:00.57 # Mc/sec: 39356.14 // Query: T007016_3 [L=7979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-11 42.0 0.0 1.2e-10 41.3 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 7.5e-15 1.2e-10 60 106 .. 654 700 .. 642 704 .. 0.90 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 7.5e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007016_3 654 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 700 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.72u 0.35s 00:00:02.06 Elapsed: 00:00:00.60 # Mc/sec: 38044.27 // Query: T172068_1 [L=1944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.25s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 10695.10 // Query: T172068_2 [L=1944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.54 # Mc/sec: 10298.99 // Query: T172068_3 [L=1943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.51 # Mc/sec: 10899.20 // Query: T051646_1 [L=281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 63 (0.00386361); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.47 # Mc/sec: 1710.41 // Query: T051646_2 [L=280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 1704.32 // Query: T051646_3 [L=280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 34 (0.00208512); expected 326.1 (0.02) Passed bias filter: 20 (0.00122654); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.46 # Mc/sec: 1741.37 // Query: T376363_1 [L=6061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.57 # Mc/sec: 29895.67 // Query: T376363_2 [L=6061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.56 # Mc/sec: 30420.16 // Query: T376363_3 [L=6061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.37s 00:00:02.25 Elapsed: 00:00:00.83 # Mc/sec: 20890.95 // Query: T221720_1 [L=2236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 9270.75 // Query: T221720_2 [L=2236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 9009.60 // Query: T221720_3 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.72 # Mc/sec: 8880.49 // Query: T214542_1 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.75 # Mc/sec: 7750.94 // Query: T214542_2 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.82 # Mc/sec: 7089.28 // Query: T214542_3 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 8304.58 // Query: T222342_1 [L=2557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2557 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.78 # Mc/sec: 9378.39 // Query: T222342_2 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.70 # Mc/sec: 10446.12 // Query: T222342_3 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.80 # Mc/sec: 9140.35 // Query: T229512_1 [L=853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 6.4 10.6 2.6 6.7 9.3 1.4 1 DMP1 Dentin matrix protein 1 (DMP1) Domain annotation for each model (and alignments): >> DMP1 Dentin matrix protein 1 (DMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 9.3 0.00016 2.6 111 218 .. 123 232 .. 85 250 .. 0.79 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00016 DMP1 111 DDtfgdedngpgpeerqggnsrlkseeDsadttqssEdsasq..gedsaqdttseSrdldeedevssrpesgdstkdseSeEhwvgggsegdsshgdgse 208 +Dt + n+ ++++ +++++ ++ ++ ad +++Ed a+ ed+a+ ++se +ev + + ++++++ +E+ v+g +++d hg ++e T229512_1 123 EDTVHNITNEDASHDITNEDAVHGIANEAADKGNANEDAAQGiaNEDAAHGIASEDAAQGIANEVAAQGIANEDAAQGIANEDAVQGIANEDAAHGIANE 222 6899999999999999988888899999999999999987541146677777766666666666777777789999999999999999999999999999 PP DMP1 209 fddegmqsdD 218 + +g ++D T229512_1 223 DAAHGIANED 232 9999999999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 419 (0.0256961); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 4000.47 // Query: T229512_2 [L=853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 4357.66 // Query: T229512_3 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.74 # Mc/sec: 3293.82 // Query: T275305_1 [L=1056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 4795.30 // Query: T275305_2 [L=1056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 5035.06 // Query: T275305_3 [L=1056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 5394.71 // Query: T306186_1 [L=1396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 7006.52 // Query: T306186_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 6046.75 // Query: T306186_3 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 5868.91 // Query: T138459_1 [L=1459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1760 (0.107936); expected 326.1 (0.02) Passed bias filter: 972 (0.05961); expected 326.1 (0.02) Passed Vit filter: 878 (0.0538452); expected 16.3 (0.001) Passed Fwd filter: 88 (0.00539679); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.58u 0.51s 00:00:05.09 Elapsed: 00:00:01.26 # Mc/sec: 3312.66 // Query: T138459_2 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 5958.70 // Query: T138459_3 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.41s 00:00:02.04 Elapsed: 00:00:00.77 # Mc/sec: 5417.00 // Query: T062842_1 [L=1625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1918 (0.117625); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 126 (0.00772722); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.43s 00:00:02.16 Elapsed: 00:00:00.84 # Mc/sec: 5534.34 // Query: T062842_2 [L=1625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2446 (0.150006); expected 326.1 (0.02) Passed bias filter: 345 (0.0211579); expected 326.1 (0.02) Passed Vit filter: 191 (0.0117135); expected 16.3 (0.001) Passed Fwd filter: 61 (0.00374095); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.38u 0.56s 00:00:03.94 Elapsed: 00:00:01.08 # Mc/sec: 4304.49 // Query: T062842_3 [L=1624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3978 (0.243959); expected 326.1 (0.02) Passed bias filter: 377 (0.0231203); expected 326.1 (0.02) Passed Vit filter: 286 (0.0175396); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.98u 0.44s 00:00:03.42 Elapsed: 00:00:01.17 # Mc/sec: 3970.93 // Query: T227642_1 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.082 12.7 3.0 1.1 9.1 1.0 2.9 2 Gemini_C4 Geminivirus C4 protein Domain annotation for each model (and alignments): >> Gemini_C4 Geminivirus C4 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 0.014 2.2e+02 30 41 .. 133 144 .. 124 153 .. 0.71 2 ? 9.1 1.0 6.8e-05 1.1 30 68 .. 157 194 .. 154 212 .. 0.67 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.014 Gemini_C4 30 PGqhisirtfre 41 Gqh s+rt + T227642_1 133 AGQHSSLRTLQK 144 578888887654 PP == domain 2 score: 9.1 bits; conditional E-value: 6.8e-05 Gemini_C4 30 PGqhisirtfrelnpaPtskptstrtetqsnGensrstv 68 Gqh s+rt r l ++ s+p+ ++t+ e sr v T227642_1 157 AGQHASLRTSRRLVNTQVSEPSRRLVNTRVS-EPSRRLV 194 7****************99997766666654.4444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.70 # Mc/sec: 1336.42 // Query: T227642_2 [L=326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 1554.38 // Query: T227642_3 [L=326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.63 # Mc/sec: 1480.37 // Query: T353283_1 [L=2818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.56 # Mc/sec: 14396.11 // Query: T353283_2 [L=2818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.60 # Mc/sec: 13436.36 // Query: T353283_3 [L=2818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.32s 00:00:01.82 Elapsed: 00:00:01.03 # Mc/sec: 7827.01 // Query: T293099_1 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 8662.42 // Query: T293099_2 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 8414.93 // Query: T293099_3 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 8069.11 // Query: T226432_1 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 4000.55 // Query: T226432_2 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 3647.56 // Query: T226432_3 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0037 16.7 0.4 0.0068 15.9 0.4 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.4 4.2e-07 0.0068 3 18 .. 227 242 .. 225 242 .. 0.90 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.2e-07 DUF1725 3 agKWMELEnIILSEis 18 a++WM LE+I+ SE s T226432_3 227 ATTWMNLEDIMSSETS 242 89*********99965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 4066.13 // Query: T091605_1 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.61 # Mc/sec: 1603.94 // Query: T091605_2 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 1846.05 // Query: T091605_3 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 1876.04 // Query: T123304_1 [L=4211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.35s 00:00:01.79 Elapsed: 00:00:00.71 # Mc/sec: 16967.54 // Query: T123304_2 [L=4211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:00.69 # Mc/sec: 17459.36 // Query: T123304_3 [L=4211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.68 # Mc/sec: 17716.11 // Query: T336036_1 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 546 (0.0334846); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 1862.05 // Query: T336036_2 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 684 (0.0419477); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 1768.95 // Query: T336036_3 [L=370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 1794.08 // Query: T211123_1 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 7259.94 // Query: T211123_2 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.84 9.5 4.1 0.96 9.3 0.8 2.2 2 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.8 5.9e-05 0.96 33 69 .. 1205 1241 .. 1186 1244 .. 0.67 2 ? 0.6 0.1 0.029 4.7e+02 42 63 .. 1257 1278 .. 1256 1279 .. 0.63 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 5.9e-05 Lamprin 33 tgflghpvgglgygglgygglgvaglgvaglgygglg 69 + g + glg+ lg+ gl + g+agl + gl T211123_2 1205 SHGPGAGLAGLGWAELGWAGLNWVEPGLAGLTWAGLA 1241 4444556667777777777777777777777777764 PP == domain 2 score: 0.6 bits; conditional E-value: 0.029 Lamprin 42 glgygglgygglgvaglgvagl 63 glg+ lg+ +g+ lg agl T211123_2 1257 GLGWAVLGWTEVGWDELGWAGL 1278 5666666666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 6705.61 // Query: T211123_3 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 6414.06 // Query: T202685_1 [L=1743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-10 40.1 0.3 5.5e-10 39.3 0.3 1.4 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.3 0.3 3.4e-14 5.5e-10 33 96 .. 1273 1337 .. 1268 1343 .. 0.95 Alignments for each domain: == domain 1 score: 39.3 bits; conditional E-value: 3.4e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202685_1 1273 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1337 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 7226.71 // Query: T202685_2 [L=1743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-37 127.9 0.2 4.6e-37 127.3 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.3 0.2 2.8e-41 4.6e-37 1 168 [. 874 1038 .. 874 1039 .. 0.87 Alignments for each domain: == domain 1 score: 127.3 bits; conditional E-value: 2.8e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202685_2 874 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 967 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202685_2 968 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1038 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 8174.47 // Query: T202685_3 [L=1742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9771.70 // Query: T110959_1 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3234.49 // Query: T110959_2 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 3102.04 // Query: T110959_3 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 2876.43 // Query: T146786_1 [L=532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.8 0.1 0.02 14.9 0.1 1.4 1 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like Domain annotation for each model (and alignments): >> NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.1 1.2e-06 0.02 8 44 .. 49 86 .. 46 99 .. 0.88 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 1.2e-06 NOB1_Zn_bind 8 vlrChaCfkvtkdmtkkFCpkCGn.ktLkrvavsvden 44 v C + f+ t+ + +FC++C + + L r++ v++ T146786_1 49 VQLCVGSFQHTTSPHHHFCSSCSEpHPLLRTSWAVSHP 86 788********************9899****9999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2818.45 // Query: T146786_2 [L=531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 483 (0.029621); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2712.68 // Query: T146786_3 [L=531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 2712.68 // Query: T071904_1 [L=2179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.60 # Mc/sec: 10389.58 // Query: T071904_2 [L=2179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 86 (0.00527413); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 10747.84 // Query: T071904_3 [L=2178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 10214.57 // Query: T194236_1 [L=2900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 716 (0.0439102); expected 326.1 (0.02) Passed bias filter: 304 (0.0186434); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.64 # Mc/sec: 12963.14 // Query: T194236_2 [L=2900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.63 # Mc/sec: 13168.90 // Query: T194236_3 [L=2899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 13164.36 // Query: T221769_1 [L=203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.63 # Mc/sec: 921.82 // Query: T221769_2 [L=203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 1037.05 // Query: T221769_3 [L=203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.52 # Mc/sec: 1116.82 // Query: T138315_1 [L=3460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.77 # Mc/sec: 12855.16 // Query: T138315_2 [L=3459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.63 # Mc/sec: 15707.32 // Query: T138315_3 [L=3459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 14136.59 // Query: T156838_1 [L=4685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.41s 00:00:02.00 Elapsed: 00:00:00.74 # Mc/sec: 18112.15 // Query: T156838_2 [L=4685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.68 # Mc/sec: 19710.28 // Query: T156838_3 [L=4684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.80 # Mc/sec: 16750.16 // Query: T028854_1 [L=7601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.45s 00:00:02.66 Elapsed: 00:00:00.95 # Mc/sec: 22889.65 // Query: T028854_2 [L=7601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.46s 00:00:02.76 Elapsed: 00:00:00.83 # Mc/sec: 26199.00 // Query: T028854_3 [L=7600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.41s 00:00:02.55 Elapsed: 00:00:00.96 # Mc/sec: 22648.24 // Query: T270939_1 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.66 # Mc/sec: 2358.02 // Query: T270939_2 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-30 105.1 4.2 4.7e-29 101.4 4.2 2.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.026 13.5 0.1 0.046 12.7 0.1 1.3 1 MCD Malonyl-CoA decarboxylase (MCD) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.4 4.2 5.8e-33 4.7e-29 1 218 [. 138 390 .. 138 394 .. 0.87 Alignments for each domain: == domain 1 score: 101.4 bits; conditional E-value: 5.8e-33 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK g ++++Rpisl+++d k+l k++a+r++++++kl++++ f pg +++ ++ +++++ ++ k k+++++++D +kaFd+++ ++ l++ T270939_2 138 IPKSGrditkKENFRPISLMNIDAKILIKILANRIQQHIKKLIHHDKLSFIPGMQVWFNIhksiNVIQHMNRTKDKNHTIISIDAEKAFDKIQQPFMLKT 237 677777777788***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...................TEEECTTEEEEEESSHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.............kgvtllrYaDDililskske 178 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++ P+l + + +++ + + + + ++ DD++++ +++ T270939_2 238 LNKLGIDGTYLKIIIAIYDKPTANIILNGQKLEAFPLKTGTR----WVPSLTTPIQHSVGSSGQGNQagernkgysirkrGSQIVPVFTDDMIVYLENPI 333 *****************************9889998888777....56666666666666665554456778*******8778888************55 PP H.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEET CS RVT_1 179 e.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyL 218 +q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyL T270939_2 334 IsAQNLLNLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSKlpftiASKRIKYL 390 55***************************9988777666655114455677888877 PP >> MCD Malonyl-CoA decarboxylase (MCD) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 5.7e-06 0.046 201 254 .. 163 216 .. 151 248 .. 0.72 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 5.7e-06 HHHHHHHHHHHHH-TT--EEEEEE--TTSHHHHHHHCCGCC-TT--HHHHCCHG CS MCD 201 fLiKrVveelkrelpklktfatLSPiPgfrkwlkrelkkeeealleeeeaeala 254 +LiK +++++ ++kl ++ LS iPg++ w++ +++ + + +++++ ++ + T270939_2 163 ILIKILANRIQQHIKKLIHHDKLSFIPGMQVWFNIHKSINVIQHMNRTKDKNHT 216 79********************************77544444444433333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 498 (0.0305409); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 2505.53 // Query: T270939_3 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.9 0.0 0.023 14.1 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 1.4e-06 0.023 135 158 .. 280 303 .. 276 318 .. 0.86 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.4e-06 T-TTHHHHHHHHHHHHHTT-T... CS RVT_1 135 GsvlSPllfnlfmnellrelrkra 158 G++lSPllfn++++ l r +r++ T270939_3 280 GCPLSPLLFNIVLEVLARAIRQEK 303 9********************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 2678.33 // Query: T167926_1 [L=3357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-28 98.2 0.0 1.4e-23 83.7 0.0 2.4 2 Gag_p24 gag gene protein p24 (core nucleocapsid protei 9.9e-22 77.3 0.0 2.7e-21 75.8 0.0 1.7 2 rve Integrase core domain 3.4e-13 49.2 0.7 9.4e-13 47.7 0.7 1.8 1 Integrase_Zn Integrase Zinc binding domain 1.2e-10 41.2 0.1 7.8e-10 38.5 0.0 2.1 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 6.5e-07 28.4 0.8 1.5e-06 27.3 0.8 1.6 1 IN_DBD_C Integrase DNA binding domain 1.3e-05 24.8 0.1 3e-05 23.6 0.1 1.6 1 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 0.018 15.1 0.0 0.034 14.3 0.0 1.4 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.0 0.0 5.3e-05 0.12 1 39 [. 1456 1496 .. 1456 1506 .. 0.83 2 ! 83.7 0.0 6.1e-27 1.4e-23 112 205 .] 1571 1664 .. 1562 1664 .. 0.93 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 5.3e-05 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalae..qalpkdlek 39 +k L+++k+a++qygp sp+v+ l +++a+ q++p d T167926_1 1456 FKLLNEFKQAINQYGPRSPFVMGLSKNVATssQMIPIDGTL 1496 689**********************9997522668888655 PP == domain 2 score: 83.7 bits; conditional E-value: 6.1e-27 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCqgvggavhkarvl 205 +ki + g++ + ++ ++QGpkEpy df+a l+++l+k++ad +a+d++++ La++NANp+Cq++l ++ ++ l d+++aC+ +gg hka +l T167926_1 1571 KKISSGGEQYPYFSAVKQGPKEPYADFIAWLQESLKKVIADSTAQDIVLQLLAFDNANPKCQAAL*PVRG-KAHLVDYIKACDSIGGNLHKATLL 1664 78999999999***************************************************99776544.689******************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 3 6.9e+03 101 117 .. 1793 1809 .. 1792 1810 .. 0.90 2 ! 75.8 0.0 1.2e-24 2.7e-21 3 118 .. 2673 2783 .. 2672 2784 .. 0.92 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 3 rve 101 rpqdnGkvErfnrtlkd 117 +p +++ +E +nr l++ T167926_1 1793 SPAWKATAEGTNRSLRT 1809 799**********9986 PP == domain 2 score: 75.8 bits; conditional E-value: 1.2e-24 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + g+ ay++v +d+fs++++a + s e ++ v + l + + g p + +Dn++ yts+a+++f + ++i+ + p+ T167926_1 2673 EPNSLWQMDVTHVP--SFGRLAYVHVCVDTFSHFVWATCQSGE-SSACVKHHLLQCFVVMGI--PASIKTDNAPSYTSQALATFFSIWNIEDITGIPY 2765 69************..56777**********************.666667777777778888..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 ++q +++vEr+n lk++ T167926_1 2766 NSQGQAIVERMNLSLKQQ 2783 ***************997 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.7 0.7 4e-16 9.4e-13 1 37 [. 2630 2666 .. 2630 2667 .. 0.98 Alignments for each domain: == domain 1 score: 47.7 bits; conditional E-value: 4e-16 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+++H+l+H+N +Lr++++it+++A++I q CptCq T167926_1 2630 ARQFHNLTHVNVSGLRHRYSITWKEAKAINQRCPTCQ 2666 89**********************************8 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.22 5.1e+02 3 26 .. 2116 2135 .. 2114 2135 .. 0.82 2 ! 38.5 0.0 3.4e-13 7.8e-10 132 219 .. 2200 2281 .. 2198 2284 .. 0.94 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.22 -TT.S-EEE......-THHHHCTB CS RVT_1 3 KkgpgsyRpisllsvdykalnkli 26 K++pg++R++ +d++a+n++i T167926_1 2116 KTKPGKWRML----TDLRAINSAI 2135 44469****7....7******986 PP == domain 2 score: 38.5 bits; conditional E-value: 3.4e-13 --ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 132 lpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + qG+ +SP++++ ++ +++++ +kr++++++++ +DDil++s ++e l +++ ++e+ ++ + l i+p+ ++ + +++ yLG T167926_1 2200 VAQGMLNSPTICQTYVGQAIEPTHKRFSQCYIIHHMDDILCASPTPEILLQCYGHLENSISHASLIIAPDAIQTT------TPYVYLG 2281 67*******************************************************************988888......6777776 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.8 6.2e-10 1.5e-06 19 49 .. 3071 3101 .. 3055 3102 .. 0.81 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 6.2e-10 EEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 19 dpvLikgrGavcvFPqdasdikwvPeRlvrk 49 +++++grG++cv P ++++++wvP R +++ T167926_1 3071 GKIITWGRGYACVSPGQNQQPIWVPSRYLKP 3101 589*************************996 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.1 1.3e-08 3e-05 43 83 .. 1285 1325 .. 1285 1326 .. 0.88 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 1.3e-08 Gag_p10 43 GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevL 83 G +d+e+W+ vg+ lk +a + g e ip++v+s+w+li++ L T167926_1 1285 GNMDVEVWEEVGSALK-KAYKDGaEDIPITVWSVWALIHSTL 1325 789*************.5555666**************9988 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 1.4e-05 0.034 2 115 .. 2676 2789 .. 2675 2798 .. 0.83 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.4e-05 DDE_Tnp_IS240 2 kswrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasaya.salkelkregelfdevshvqvk. 93 + w++D T v G+ aY+ vD + + + + + +k l +++ + p++i tD a++y +al++++ + +++ + T167926_1 2676 SLWQMDVTHVPSFGRLAYVHVCVDTFSHFVWATCQSGESSACVKHHLLQCFVVM-GIPASIKTDNAPSYTsQALATFFSIWN-IEDITGIPYNs 2767 57**************************9999999999999999*********9.**************7358999998434.34444443331 PP DDE_Tnp_IS240 94 ylnnriEsdhrtlKkrlrptrg 115 + ++E+ + lK++l++++g T167926_1 2768 QGQAIVERMNLSLKQQLQKQKG 2789 446689**********999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.59 # Mc/sec: 16277.64 // Query: T167926_2 [L=3357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-17 60.4 0.0 2.2e-16 59.2 0.0 1.6 1 RVT_thumb Reverse transcriptase thumb domain 5e-15 55.5 0.1 1e-14 54.5 0.1 1.5 1 RVP Retroviral aspartyl protease 6.5e-14 51.6 0.0 1.1e-13 50.8 0.0 1.3 1 dUTPase dUTPase 9.4e-07 29.0 0.0 1.5e-06 28.3 0.0 1.3 1 RNase_H RNase H 0.0001 21.4 0.2 0.00022 20.3 0.2 1.5 1 IN_DBD_C Integrase DNA binding domain 0.0002 21.0 0.0 0.00048 19.8 0.0 1.6 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 7.9e-20 2.2e-16 16 66 .] 2306 2356 .. 2302 2356 .. 0.98 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 7.9e-20 HHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 16 DfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 DfQ Llg INWi p lgi t+ ++ LF+i rGd++ tsp qLT+eAe++L+ T167926_2 2306 DFQNLLGYINWIPPALGILTYAMSTLFSIFRGDPSVTSPWQLTKEAEAELQ 2356 9************************************************97 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.5 0.1 3.7e-18 1e-14 2 90 .. 1902 1989 .. 1901 1999 .. 0.96 Alignments for each domain: == domain 1 score: 54.5 bits; conditional E-value: 3.7e-18 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-H CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGr 90 +++P ++ i+ k++++l+DtG d+++is +++P wp++ a+ ++ G+ +a e++qs++ +++ + + + g+++p+i++ +p+nl+G T167926_2 1902 DNHPTCEKTIQRKKFKGLVDTGVDISIISLHHWPSAWPIQPAQFNIVGVDKAPEVYQSSYTLHCKGPDGQPGTIQPIITS-IPINLWGL 1989 57899**************************************************************************9.*******5 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.8 0.0 4.2e-17 1.1e-13 7 106 .. 1774 1872 .. 1772 1892 .. 0.84 Alignments for each domain: == domain 1 score: 50.8 bits; conditional E-value: 4.2e-17 BESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-E..EE-TT-EEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdv..kikkgdRiAqLif 101 +++++sA Dl+ ++ + + p + + vpt+++ +lp+g+ +l+l+RS+l++kg+ v++gvid d +Ge+++v+ + v k + g+Ri qL++ T167926_2 1774 SPATAGSASVDLCCTRAVSLLPgKPLQKVPTGVCGPLPAGMVGLLLGRSSLNLKGVQVHTGVIDLDCNGEIQIVISTS----Vp*KAEPGERIGQLLI 1867 6899******************777799*****************************************999999654....4444678888888888 PP EEBEC CS dUTPase 102 arilt 106 +++ T167926_2 1868 LPYVG 1872 87776 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.3 0.0 5.5e-10 1.5e-06 5 74 .. 2504 2561 .. 2500 2564 .. 0.85 Alignments for each domain: == domain 1 score: 28.3 bits; conditional E-value: 5.5e-10 EEEEEEEEECTTTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHH CS RNase_H 5 vvYtDGsclgnsgeggaga.vlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvv 74 +v++DGs++ g+a + +l+++ +++p+ +++++aEL+AvieaL a + +n+++DS+Yvv T167926_2 2504 NVFADGSSN-----GKASYsGLKGK---VFQTPY---TSAQKAELEAVIEALTA--FNMPINMISDSSYVV 2561 79*****88.....88888666644...666666...6****************..8999*********97 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.2 8.2e-08 0.00022 19 49 .. 2852 2882 .. 2840 2883 .. 0.82 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 8.2e-08 EEEEEEETTEEEE..E-.SS-EEEEEGGGEEE CS IN_DBD_C 19 dpvLikgrGavcvFPqd.asdikwvPeRlvrk 49 +++++grG++cv +++ +++++wvP R +++ T167926_2 2852 GKIITWGRGYACV-SKGlNQQPIWVPLRHLKP 2882 589**********.7764889*******9985 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 1.8e-07 0.00048 2 42 .. 1244 1284 .. 1243 1286 .. 0.88 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 1.8e-07 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee 42 ++ +l++ ++Ll++ G+kvs+ + l +++++ve++cPWFp e T167926_2 1244 HKAYLSLPRQLLRKGGVKVST-S*LMQLFSMVEKYCPWFPTE 1284 577999999**********96.6667899***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.28u 0.30s 00:00:01.58 Elapsed: 00:00:00.69 # Mc/sec: 13918.56 // Query: T167926_3 [L=3357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-16 57.6 1.3 1.6e-15 56.4 1.3 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 7.4e-06 25.7 0.4 1.6e-05 24.6 0.4 1.6 1 G-patch G-patch domain 0.00083 19.1 0.0 0.0014 18.4 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) ------ inclusion threshold ------ 0.073 13.0 0.1 0.15 12.0 0.1 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.4 1.3 3.9e-19 1.6e-15 2 34 .. 1715 1747 .. 1714 1749 .. 0.92 Alignments for each domain: == domain 1 score: 56.4 bits; conditional E-value: 3.9e-19 --B-TTT-SSBS-TTT---SEEGGGEE---XXX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsaneg 34 pgl ++CkkgkHwa++Chskfdk+Gnp s n T167926_3 1715 PGLYLKCKKGKHWANQCHSKFDKDGNPISRNAM 1747 8999************************98765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 0.4 4e-09 1.6e-05 7 44 .. 2015 2052 .. 2010 2053 .. 0.94 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 4e-09 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ G+ LGk+ qG +e+++a+++ r lG+ T167926_3 2015 HMMHEMGYVHGMELGKNLQGLKESLQAERQSSRQDLGY 2052 6********************************99997 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 3.4e-07 0.0014 43 113 .. 1499 1571 .. 1489 1575 .. 0.83 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 3.4e-07 Gag_p24 43 r..vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalek 113 ++ ++l+ +++w +e + + ++++pi+++ d+ll g a + q+ ++ +v+ q+r ++++a+ek T167926_3 1499 AclAPAQFLQfKTWWPDEASIQ-AACSAQIQPPINVTTDQLLRVGGWAALDAQVVMQDDVIDQLRGVCIRAWEK 1571 2236677778889999998888.677778889**************999888888888**************98 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 3.7e-05 0.15 23 47 .. 3137 3161 .. 3134 3171 .. 0.83 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.7e-05 HERV-K_REC 23 stkkaepptwaqlkkltqlatkyle 47 t + +pptw q+kkl+q+ l T167926_3 3137 NTHRKQPPTWGQIKKLSQMVEENLR 3161 588899************9877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.72 # Mc/sec: 13338.62 // Query: T103701_1 [L=3491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 16927.39 // Query: T103701_2 [L=3491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.40s 00:00:01.75 Elapsed: 00:00:00.83 # Mc/sec: 12032.72 // Query: T103701_3 [L=3491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-142 474.1 20.5 3e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.031 14.4 0.0 0.058 13.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.062 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.063 13.6 2.8 0.11 12.8 2.8 1.4 1 Spectrin Spectrin repeat 0.36 11.3 5.0 0.72 10.3 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.44 9.7 12.3 0.77 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.3 9.1 11.3 0.015 15.3 2.1 2.3 2 Med2 Mediator complex subunit 2 3.4 7.8 7.6 5.8 7.1 6.8 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.5e-145 3e-142 1 368 [] 3046 3381 .. 3046 3381 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.5e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103701_3 3046 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3131 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103701_3 3132 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3188 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103701_3 3189 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3281 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103701_3 3282 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3374 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103701_3 3375 QLLQNHA 3381 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.9e-05 0.058 1 72 [. 3416 3485 .. 3416 3490 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.9e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103701_3 3416 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3485 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.5e-05 0.11 76 175 .. 3070 3193 .. 3036 3200 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.5e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103701_3 3070 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3163 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103701_3 3164 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3193 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 2.8 5.5e-05 0.11 3 94 .. 3111 3200 .. 3109 3202 .. 0.92 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.5e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103701_3 3111 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3200 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 5.0 0.00035 0.72 3 95 .. 3097 3198 .. 3096 3200 .. 0.70 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00035 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103701_3 3097 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3191 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103701_3 3192 QEIWDYV 3198 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00038 0.77 30 124 .. 3099 3193 .. 3095 3200 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00038 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103701_3 3099 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3193 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.8 5.7e+03 77 96 .. 1121 1135 .. 1107 1138 .. 0.43 2 ? 15.3 2.1 7.5e-06 0.015 44 96 .. 3104 3156 .. 3097 3161 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.8 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103701_3 1121 SKKKKRKKERKKR-----KK 1135 2333332222222.....22 PP == domain 2 score: 15.3 bits; conditional E-value: 7.5e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103701_3 3104 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3156 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 6.8 0.0029 5.8 28 89 .. 3129 3188 .. 3109 3196 .. 0.71 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0029 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103701_3 3129 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3188 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 718 (0.0440329); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.74u 0.43s 00:00:02.17 Elapsed: 00:00:00.82 # Mc/sec: 12179.46 // Query: T118411_1 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.67 # Mc/sec: 3304.90 // Query: T118411_2 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 3748.17 // Query: T118411_3 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 4422.84 // Query: T227457_1 [L=2535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 13430.01 // Query: T227457_2 [L=2535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 10824.19 // Query: T227457_3 [L=2535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.69 # Mc/sec: 10510.44 // Query: T381763_1 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 4625.74 // Query: T381763_2 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 4487.66 // Query: T381763_3 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-05 24.1 0.3 6.2e-05 23.5 0.3 1.1 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.3 3.8e-09 6.2e-05 35 99 .. 932 995 .. 924 1003 .. 0.91 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 3.8e-09 VCX_VCY 35 ttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 ++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381763_3 932 IPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 995 699**********************************************99987.7777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4698.02 // Query: T272755_1 [L=678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 3078.80 // Query: T272755_2 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 3586.63 // Query: T272755_3 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.3 1.2 0.0054 16.3 0.1 2.5 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.1 0.087 1.4e+03 11 21 .] 303 313 .. 302 313 .. 0.87 2 ! 16.3 0.1 3.3e-07 0.0054 4 20 .. 402 418 .. 402 419 .. 0.91 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.087 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272755_3 303 WRGFVLTRSFR 313 9***9988886 PP == domain 2 score: 16.3 bits; conditional E-value: 3.3e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272755_3 402 VTVMQAHVRGWLERKRL 418 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 607 (0.0372256); expected 326.1 (0.02) Passed bias filter: 362 (0.0222004); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 3227.97 // Query: T099908_1 [L=4808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.35s 00:00:01.95 Elapsed: 00:00:00.70 # Mc/sec: 19649.82 // Query: T099908_2 [L=4808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:00.78 # Mc/sec: 17634.45 // Query: T099908_3 [L=4808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.74 # Mc/sec: 18587.66 // Query: T040258_1 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.72 # Mc/sec: 4720.37 // Query: T040258_2 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 5228.72 // Query: T040258_3 [L=1187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 5566.89 // Query: T306121_1 [L=1092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6007.74 // Query: T306121_2 [L=1092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.2 4.6 1.6 8.8 0.0 3.2 3 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.1 0.41 6.7e+03 14 17 .. 697 700 .. 696 700 .. 0.88 2 ? 8.8 0.0 0.0001 1.6 8 16 .. 747 755 .. 747 756 .. 0.94 3 ? 4.0 0.3 0.0033 55 11 17 .. 772 778 .. 772 779 .. 0.93 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.41 TTST CS zf-CCHC 14 rdCp 17 rdCp T306121_2 697 RDCP 700 9**9 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0001 SSSSTTTTS CS zf-CCHC 8 epGHiardC 16 +pGH+a++C T306121_2 747 KPGHWAKEC 755 69******* PP == domain 3 score: 4.0 bits; conditional E-value: 0.0033 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T306121_2 772 HWKSDCP 778 ******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 5680.05 // Query: T306121_3 [L=1092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-12 47.3 0.1 2.6e-12 46.6 0.1 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.6 0.1 1.6e-16 2.6e-12 127 210 .. 613 696 .. 610 697 .. 0.97 Alignments for each domain: == domain 1 score: 46.6 bits; conditional E-value: 1.6e-16 Gag_p30 127 akvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +k k+ +q k+++pa f+ l + rryt dpe e + + + fi+qs sd rkklq+le + ++l++ a kv+n re T306121_3 613 TKTKKTTQNKDKNPAQFMACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNRE 696 588999***************************************************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 4662.73 // Query: T155141_1 [L=8237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 705 (0.0432356); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.86u 0.47s 00:00:03.33 Elapsed: 00:00:00.82 # Mc/sec: 28737.39 // Query: T155141_2 [L=8237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 600 (0.0367963); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.14u 0.46s 00:00:03.60 Elapsed: 00:00:01.01 # Mc/sec: 23331.34 // Query: T155141_3 [L=8237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 953 (0.0584447); expected 326.1 (0.02) Passed bias filter: 413 (0.0253281); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.76u 0.59s 00:00:05.35 Elapsed: 00:00:01.44 # Mc/sec: 16364.34 // Query: T383228_1 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.71 # Mc/sec: 9593.85 // Query: T383228_2 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-28 96.8 8.0 3.5e-26 91.7 3.3 2.1 2 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.7 3.3 2.1e-30 3.5e-26 1 123 [. 1451 1575 .. 1451 1579 .. 0.97 2 ! 7.5 0.2 8.3e-05 1.4 121 147 .. 2044 2070 .. 2042 2075 .. 0.92 Alignments for each domain: == domain 1 score: 91.7 bits; conditional E-value: 2.1e-30 Tektin 1 Wkanneelykeaeaereeserlrn..esrrlideteektkktqedsnkrLeeRiediefwkeeLekeleelkeeieaLeeekrrlekalealeeplhi 96 W++n +++y++a a+ ++ser + +s++l e+++ ++ tq+ds+ r +eR++d++ w +eL+ e+e+l++e+++L ++k+rle+al+a+e p++i T383228_2 1451 WFQNCYARYHQAFADCNQSERELQghKSQQLAAEIQALAQPTQQDSKCRVGERLQDMHSWNSELQGEVEALAAETDLLLAQKQRLEHALDAMEVPFSI 1548 ********************9764449*********************************************************************** PP Tektin 97 aqeclelRekRqgidlvhDevekeLlk 123 a++++++ ++ q+ +lv+D+ve+eLlk T383228_2 1549 ATDNMQCNQRHQHANLVRDHVETELLK 1575 *************************98 PP == domain 2 score: 7.5 bits; conditional E-value: 8.3e-05 Tektin 121 LlkEveliegvqellkrtleqaeeqlr 147 L +E+eli+++qellkr + qa q+r T383228_2 2044 LPQEAELIRNIQELLKRVIVQAVSQIR 2070 679**********************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 12163.64 // Query: T383228_3 [L=2380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-05 21.7 0.0 0.0001 21.1 0.0 1.1 1 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 6.3e-09 0.0001 147 194 .. 2191 2238 .. 2181 2264 .. 0.91 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 6.3e-09 Tektin 147 rllraakyeLekdlsdKeealeiDeeclslkntsanisykpgaerlde 194 rl+r+ + +e+d+sdK ea+++De+c + +++s++++ +p l+ T383228_3 2191 RLNREHMEICEMDWSDKVEAYNLDETCGRHRSQSTEVQAHPALHHLPR 2238 789*************************************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.59 # Mc/sec: 11540.30 // Query: T052203_1 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 7003.92 // Query: T052203_2 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6876.03 // Query: T052203_3 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7126.07 // Query: T182465_1 [L=2252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.3 0.5 0.09 12.3 0.5 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.5 5.5e-06 0.09 6 15 .. 710 719 .. 707 719 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.5e-06 DUF1725 6 WMELEnIILS 15 WM LEnI+LS T182465_1 710 WMNLENIMLS 719 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.59 # Mc/sec: 10919.64 // Query: T182465_2 [L=2251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 10914.79 // Query: T182465_3 [L=2251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 11297.77 // Query: T344412_1 [L=3862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-33 114.0 0.3 1.1e-32 113.1 0.3 1.4 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.1 0.3 7e-37 1.1e-32 287 367 .. 2138 2220 .. 2136 2221 .. 0.98 Alignments for each domain: == domain 1 score: 113.1 bits; conditional E-value: 7e-37 --HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 287 lsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +saetl+arrew ++++ilke+kfqPr++yPak+s+i+dGeik f dk++lrd ++ rP l+++l+e ++e ++ yq+l+++ T344412_1 2138 ISAETLQARREWRPIFNILKENKFQPRISYPAKVSFISDGEIKSFTDKQMLRDVVTNRPDLQEFLEEalNMENNNLYQPLQKH 2220 8********************************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 17820.20 // Query: T344412_2 [L=3862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-32 110.7 0.3 1.1e-31 109.9 0.3 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.9 0.3 6.9e-36 1.1e-31 65 222 .] 2832 3015 .. 2806 3015 .. 0.93 Alignments for each domain: == domain 1 score: 109.9 bits; conditional E-value: 6.9e-36 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T....... CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.... 158 k+++++++D +k F+++++++ l++l++++v+ + +++i++++ + ++++ +n ++ e ++ k+g++qG++lSPllfn++++ l r +r++ T344412_2 2832 DDKNHMIISIDAEKSFNKIQHPFMLKTLNKLGVDGMYLKIIRAIYDKSTTNIILNRQKLEALPLKTGIRQGCPLSPLLFNMVLEVLARAIRQEKeikg 2929 46899****************************************************99*********************************99**** PP ........TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 .....kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin K +++l+ ++ ++++kyLG++l T344412_2 2930 iqigkEEVKLSLFADDMIVYLENsIVSAQNLLKLISNFSKVSGYKINVLKLQAFLYtnnrqteieittKFpfiiATKRIKYLGIPL 3015 ***********************7888***************************99999988887765226789*********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.62 # Mc/sec: 17820.20 // Query: T344412_3 [L=3861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-34 118.9 13.4 2e-33 115.6 4.7 2.5 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 1.4 7e-05 1.1 30 83 .. 1943 2008 .. 1932 2021 .. 0.74 2 ! 115.6 4.7 1.3e-37 2e-33 202 295 .. 2051 2146 .. 2030 2154 .. 0.93 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 7e-05 XXXX..XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.XXXXXXX..........XXXX CS Transposase_22 30 sPatteeldpdlkdflelriedikkdfyke...lkelieskakele.alkekee..........ntek 83 Pa e+++++++f+el + +++ + lke + +++ke + k ee nt+ T344412_3 1943 TPAR--EQNWMENEFNELTEVSFRRWVITNss*LKEHVLTQCKEAKnLDKRSEElltritslekNTND 2008 4555..9******************887655799**********985556555544444433333333 PP == domain 2 score: 115.6 bits; conditional E-value: 1.3e-37 T--HHHHHHHHHHHHHHH-HHHHHHT---EE..EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH CS Transposase_22 202 deqlkklenilnkiieenfPnlkkeanviiq..eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl 292 +e+++klen+l++ii+enfPnl+++an++iq ei+ P+ ++ +ra++rhii+r+tkv+ k+k l +rek +vt kGkPirltadl + T344412_3 2051 VENGTKLENTLQEIIQENFPNLARQANIQIQihEIQGIPQTHSLRRATPRHIIIRFTKVEVKEKRLSVAREKSQVTHKGKPIRLTADLCRNPA 2143 689************************988766*******************************************************87655 PP HHH CS Transposase_22 293 kar 295 + T344412_3 2144 SQK 2146 554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.26s 00:00:01.40 Elapsed: 00:00:00.61 # Mc/sec: 18107.65 // Query: T314344_1 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.051 13.1 1.2 0.14 11.8 1.2 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 1.2 8.4e-06 0.14 3 16 .. 3657 3670 .. 3657 3671 .. 0.90 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 8.4e-06 DUF1725 3 agKWMELEnIILSE 16 +++WM LE+I+L E T314344_1 3657 IATWMNLEDIMLQE 3670 68**********77 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.30u 0.31s 00:00:01.61 Elapsed: 00:00:00.61 # Mc/sec: 23909.03 // Query: T314344_2 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.80 # Mc/sec: 18230.64 // Query: T314344_3 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.45s 00:00:02.30 Elapsed: 00:00:00.80 # Mc/sec: 18230.64 // Query: T249676_1 [L=3652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.34s 00:00:01.73 Elapsed: 00:00:00.62 # Mc/sec: 16851.21 // Query: T249676_2 [L=3651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.72 # Mc/sec: 14506.79 // Query: T249676_3 [L=3651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.42s 00:00:02.03 Elapsed: 00:00:00.90 # Mc/sec: 11605.43 // Query: T314164_1 [L=4622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.37s 00:00:02.02 Elapsed: 00:00:00.75 # Mc/sec: 17630.34 // Query: T314164_2 [L=4622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.35s 00:00:01.77 Elapsed: 00:00:00.81 # Mc/sec: 16324.39 // Query: T314164_3 [L=4621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.46s 00:00:01.97 Elapsed: 00:00:00.77 # Mc/sec: 17168.70 // Query: T227976_1 [L=2067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 8328.64 // Query: T227976_2 [L=2067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.75 # Mc/sec: 7884.45 // Query: T227976_3 [L=2067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 7990.99 // Query: T222040_1 [L=3126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:00.76 # Mc/sec: 11767.05 // Query: T222040_2 [L=3126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.44s 00:00:01.80 Elapsed: 00:00:00.76 # Mc/sec: 11767.05 // Query: T222040_3 [L=3125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.81 # Mc/sec: 11037.15 // Query: T378369_1 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.43s 00:00:01.56 Elapsed: 00:00:00.83 # Mc/sec: 8630.74 // Query: T378369_2 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 10381.91 // Query: T378369_3 [L=2503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.62 # Mc/sec: 11549.45 // Query: T316434_1 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.74 # Mc/sec: 9970.38 // Query: T316434_2 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.83 # Mc/sec: 8889.25 // Query: T316434_3 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.87 # Mc/sec: 8480.55 // Query: T276597_1 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 64 (0.00392494); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.64 # Mc/sec: 3155.85 // Query: T276597_2 [L=705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 71 (0.00435423); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 3418.45 // Query: T276597_3 [L=705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 9.1 33.1 43 4.1 0.2 10.8 12 SspN Small acid-soluble spore protein N family Domain annotation for each model (and alignments): >> SspN Small acid-soluble spore protein N family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.13 2.1e+03 23 37 .. 422 436 .. 420 446 .. 0.69 2 ? 0.3 0.0 0.04 6.5e+02 22 37 .. 445 460 .. 443 464 .. 0.85 3 ? 2.9 0.2 0.0059 95 21 36 .. 468 483 .. 466 493 .. 0.89 4 ? 2.6 0.2 0.0076 1.2e+02 22 36 .. 493 507 .. 480 511 .. 0.60 5 ? 2.8 0.6 0.0063 1e+02 21 36 .. 516 531 .. 504 541 .. 0.86 6 ? 1.3 0.1 0.019 3.1e+02 22 37 .. 529 544 .. 528 553 .. 0.86 7 ? 1.7 0.1 0.014 2.4e+02 22 38 .. 553 569 .. 550 577 .. 0.78 8 ? 1.3 0.1 0.019 3.1e+02 22 36 .. 577 591 .. 571 593 .. 0.85 9 ? 3.4 0.1 0.004 66 21 36 .. 600 615 .. 595 618 .. 0.92 10 ? 2.8 0.1 0.0062 1e+02 21 36 .. 636 651 .. 635 653 .. 0.92 11 ? 4.1 0.2 0.0026 43 21 37 .. 660 676 .. 657 686 .. 0.91 12 ? -1.4 0.0 0.13 2.1e+03 21 36 .. 684 699 .. 679 701 .. 0.83 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.13 SspN 23 aggNkGkkMqdksge 37 ag +G++M k g T276597_3 422 AGTWRGEQMLRKAGA 436 666678888877775 PP == domain 2 score: 0.3 bits; conditional E-value: 0.04 SspN 22 kaggNkGkkMqdksge 37 kag +G++M +k g T276597_3 445 KAGTWRGEQMLTKAGA 460 677789*******996 PP == domain 3 score: 2.9 bits; conditional E-value: 0.0059 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276597_3 468 RKAGARRGEQMITKAG 483 89999******99988 PP == domain 4 score: 2.6 bits; conditional E-value: 0.0076 SspN 22 kaggNkGkkMqdksg 36 kag+ +G++M +k g T276597_3 493 KAGARRGEQMLTKAG 507 455556666666655 PP == domain 5 score: 2.8 bits; conditional E-value: 0.0063 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276597_3 516 RKAGARRGEQMLTKAG 531 7889999999999887 PP == domain 6 score: 1.3 bits; conditional E-value: 0.019 SspN 22 kaggNkGkkMqdksge 37 kag+ +G++M +k g T276597_3 529 KAGAWRGEQMLTKAGA 544 788999******9996 PP == domain 7 score: 1.7 bits; conditional E-value: 0.014 SspN 22 kaggNkGkkMqdksgeh 38 kag+ +G++M +k g + T276597_3 553 KAGAWRGEQMLTKAGAR 569 67888999999998864 PP == domain 8 score: 1.3 bits; conditional E-value: 0.019 SspN 22 kaggNkGkkMqdksg 36 kag+ +G++M +k g T276597_3 577 KAGARRGEQMLTKAG 591 788999999999988 PP == domain 9 score: 3.4 bits; conditional E-value: 0.004 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276597_3 600 RKAGAQRGEQMLTKAG 615 89***********998 PP == domain 10 score: 2.8 bits; conditional E-value: 0.0062 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276597_3 636 RKAGARRGEQMLTKAG 651 899**********998 PP == domain 11 score: 4.1 bits; conditional E-value: 0.0026 SspN 21 rkaggNkGkkMqdksge 37 rkag+ +G++M +k g T276597_3 660 RKAGAQRGEQMLTKAGA 676 899***********996 PP == domain 12 score: -1.4 bits; conditional E-value: 0.13 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G+ M k g T276597_3 684 RKAGARRGEEMLRKAG 699 7899999999988877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 3010.28 // Query: T247036_1 [L=1815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 9109.49 // Query: T247036_2 [L=1814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-44 149.1 3.5 5e-44 148.4 3.5 1.4 1 DUF4567 Domain of unknown function (DUF4567) Domain annotation for each model (and alignments): >> DUF4567 Domain of unknown function (DUF4567) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.4 3.5 3.1e-48 5e-44 1 75 [] 604 678 .. 604 678 .. 0.99 Alignments for each domain: == domain 1 score: 148.4 bits; conditional E-value: 3.1e-48 DUF4567 1 rldevPaslrlqhhlelrkalavalPPlvvesPaahhvaGGrladlaldvalGarrvrlalvrqvakdGPvalla 75 rldevPaslrlqhhl+lr++lav+lPPlv++sPaahhvaGG+++d++ld+alGarr+rlalvrqv++dGPva+la T247036_2 604 RLDEVPASLRLQHHLQLREGLAVPLPPLVIQSPAAHHVAGGSFSDFTLDIALGARRIRLALVRQVTQDGPVAFLA 678 9*************************************************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.76 # Mc/sec: 6828.35 // Query: T247036_3 [L=1814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 7413.64 // Query: T259964_1 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 5153.83 // Query: T259964_2 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 5576.27 // Query: T259964_3 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 5571.58 // Query: T331403_1 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.44s 00:00:01.63 Elapsed: 00:00:00.80 # Mc/sec: 9916.35 // Query: T331403_2 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.65 # Mc/sec: 12204.74 // Query: T331403_3 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 79 (0.00484484); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.75 # Mc/sec: 10577.44 // Query: T277460_1 [L=4945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.39s 00:00:02.16 Elapsed: 00:00:00.86 # Mc/sec: 16449.77 // Query: T277460_2 [L=4945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.84 # Mc/sec: 16841.43 // Query: T277460_3 [L=4944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.36s 00:00:02.04 Elapsed: 00:00:00.88 # Mc/sec: 16072.66 // Query: T211088_1 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.71 # Mc/sec: 8425.35 // Query: T211088_2 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.70 # Mc/sec: 8545.71 // Query: T211088_3 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 9203.07 // Query: T226680_1 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.74 # Mc/sec: 4233.26 // Query: T226680_2 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 4746.38 // Query: T226680_3 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 4972.40 // Query: T012472_1 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-07 28.5 0.2 1.5e-06 27.5 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.2 9.2e-11 1.5e-06 1 19 [] 850 868 .. 850 868 .. 0.98 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 9.2e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012472_1 850 PFAGSWMKLEAIILSKLSQ 868 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 5487.59 // Query: T012472_2 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-07 28.9 3.0 1.9e-06 27.4 0.0 2.4 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.2 0.012 1.9e+02 8 61 .. 130 192 .. 125 201 .. 0.77 2 ! 27.4 0.0 1.2e-10 1.9e-06 158 222 .] 296 382 .. 271 382 .. 0.82 3 ? -3.5 0.0 0.33 5.4e+03 10 27 .. 1026 1043 .. 1025 1044 .. 0.89 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.012 -EEE......-THHHHCTB-..-.........-------HHHH.................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellka 61 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k+ T012472_2 130 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINKH 192 7799999999988888888555********************999988887555444444444 PP == domain 2 score: 27.4 bits; conditional E-value: 1.2e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012472_2 296 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 382 256666789***************5555***************************99999988877762256678*********986 PP == domain 3 score: -3.5 bits; conditional E-value: 0.33 EE......-THHHHCTB- CS RVT_1 10 Rpisllsvdykalnklia 27 R++ ll++ +++lnkl++ T012472_2 1026 RTLTLLCTSFRILNKLLH 1043 89999**********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6467.52 // Query: T012472_3 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-07 29.8 0.1 5.7e-07 29.1 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.1 3.5e-11 5.7e-07 31 90 .. 162 225 .. 150 227 .. 0.85 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 3.5e-11 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012472_3 162 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 225 3577889***********888888899989999999999999*****************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 6467.52 // Query: T057643_1 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 6293.83 // Query: T057643_2 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 8433.73 // Query: T057643_3 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 7270.45 // Query: T331939_1 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 4655.35 // Query: T331939_2 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 4655.35 // Query: T331939_3 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4655.35 // Query: T373349_1 [L=2527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 11851.34 // Query: T373349_2 [L=2527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 12464.34 // Query: T373349_3 [L=2526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.60 # Mc/sec: 12044.09 // Query: T138226_1 [L=14077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.08u 0.50s 00:00:03.58 Elapsed: 00:00:00.84 # Mc/sec: 47942.74 // Query: T138226_2 [L=14077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.82u 0.45s 00:00:03.27 Elapsed: 00:00:00.82 # Mc/sec: 49112.08 // Query: T138226_3 [L=14077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.64u 0.39s 00:00:03.03 Elapsed: 00:00:00.71 # Mc/sec: 56720.99 // Query: T093936_1 [L=335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1916.76 // Query: T093936_2 [L=334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 2033.02 // Query: T093936_3 [L=334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 1990.66 // Query: T006395_1 [L=3003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.60 # Mc/sec: 14318.45 // Query: T006395_2 [L=3002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.85 # Mc/sec: 10103.78 // Query: T006395_3 [L=3002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.83 # Mc/sec: 10347.24 // Query: T040789_1 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.34 11.2 9.7 0.58 10.4 9.7 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain 0.47 10.4 12.1 0.63 10.0 12.1 1.2 1 DDHD DDHD domain 4.5 6.4 42.1 7.8 5.6 42.1 1.3 1 BUD22 BUD22 Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 9.7 0.00011 0.58 12 38 .. 57 82 .. 47 108 .. 0.51 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00011 CENP-B_dimeris 12 sesesdeeeeeeeedeededeeddedd 38 e e +eeeeeeee+ee+e+ee++e+d T040789_1 57 EE-EEEEEEEEEEEEEEEEEEEEEEED 82 22.222222222222222222222222 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 12.1 0.00012 0.63 133 192 .. 9 78 .. 1 140 [. 0.49 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00012 DDHD 133 klaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeekka..........k 192 k++e++k+ +r+++++ e++++k++++ ++++++k++ +++k++ +++e+ee e+ee+ + + T040789_1 9 KKKEKEKKGRRKKKKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEeEEEEE-EeeeeeeeeeeE 78 3333333333333333333333333333322222222222211111111111111111.011111122222 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 42.1 0.0014 7.8 143 213 .. 8 80 .. 1 98 [. 0.31 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0014 BUD22 143 kkeeekkkkkkkkkkkkkkeeee...eeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaee 213 kk++ek+kk+++kkkkk++e+++ ++ ++k++e+e++++++k+++e++eeeeee+e++e++ee ee+ee+ee T040789_1 8 KKKKEKEKKGRRKKKKKREEKKKkmkKKGKKKKKEKEKRKKKKKKKKEEEEEEEEEEEEEEEEEE-EEEEEEEE 80 22223333222222222222222112222222222222222111111111111111111111111.11111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3106 (0.190482); expected 326.1 (0.02) Passed bias filter: 1261 (0.0773335); expected 326.1 (0.02) Passed Vit filter: 726 (0.0445235); expected 16.3 (0.001) Passed Fwd filter: 197 (0.0120814); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.09u 0.44s 00:00:02.52 Elapsed: 00:00:00.85 # Mc/sec: 1682.84 // Query: T040789_2 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 14.3 1.3 0.036 13.7 1.3 1.2 1 Connexin Connexin 0.5 10.3 5.4 0.91 9.5 5.4 1.4 1 Eapp_C E2F-associated phosphoprotein 1.7 8.3 7.8 2.2 7.9 7.8 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 1.3 6.6e-06 0.036 106 139 .. 49 82 .. 35 164 .. 0.55 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 6.6e-06 Connexin 106 ekekkkekkekkeeekkkkkekkkkekeeskkrr 139 +++++++kk+kk+++kkkkk+kkkk+k+++kk++ T040789_2 49 RRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKT 82 1111111111112222222222222222222222 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 5.4 0.00017 0.91 82 110 .. 53 81 .. 37 120 .. 0.51 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00017 Eapp_C 82 ekkkkkkkkkkkkeekeeeaeaeeaeeee 110 ++kkkkkkkkkkk++k+++++++++++++ T040789_2 53 RRKKKKKKKKKKKKKKKKKKKKKKKKKKK 81 11111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 7.8 0.00041 2.2 117 152 .. 52 84 .. 11 108 .. 0.46 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00041 RR_TM4-6 117 engekeekekekeeakkeseeeeeekkkkkkakskk 152 +++ k++ k+k+++kk++++++++kkkkkk+k+ + T040789_2 52 RRR-KKK--KKKKKKKKKKKKKKKKKKKKKKKKTGE 84 111.111..111111111222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2191 (0.134368); expected 326.1 (0.02) Passed bias filter: 832 (0.0510242); expected 326.1 (0.02) Passed Vit filter: 282 (0.0172942); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 2134.95 // Query: T040789_3 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 10.3 31.8 0.24 9.9 31.8 1.1 1 TT_ORF1 TT viral orf 1 0.38 8.9 34.1 0.47 8.6 34.1 1.0 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> TT_ORF1 TT viral orf 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 31.8 2.9e-05 0.24 25 62 .. 55 91 .. 26 94 .. 0.62 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 2.9e-05 TT_ORF1 25 rrrrrrrrvRRRrrgrrrrrrrrrrrrrrrrkrkklil 62 rrrrrrrr RRRrr+rrrrrrrrrrrrr r + +l++ T040789_3 55 RRRRRRRR-RRRRRRRRRRRRRRRRRRRQARGKTQLSI 91 22222222.22222333333455555555666666666 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 34.1 5.8e-05 0.47 135 210 .. 5 80 .. 1 100 [. 0.36 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 5.8e-05 CDC45 135 ddeeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrky 210 ++eeee + +e eeeeeee+++eeeedeee +++++ + +eeeeee+ee r+r+rrr+++++++ rrr++++rr+ T040789_3 5 EEEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRR 80 2222333333333333333333333333333333332222222223333333333333311222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1345 (0.082485); expected 326.1 (0.02) Passed bias filter: 641 (0.0393107); expected 326.1 (0.02) Passed Vit filter: 292 (0.0179075); expected 16.3 (0.001) Passed Fwd filter: 64 (0.00392494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 1932.99 // Query: T021762_1 [L=3735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.77 # Mc/sec: 13876.88 // Query: T021762_2 [L=3734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.77 # Mc/sec: 13873.17 // Query: T021762_3 [L=3734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.79 # Mc/sec: 13521.95 // Query: T215853_1 [L=725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-36 123.8 24.5 2.7e-36 123.8 24.5 1.8 2 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.9 0.69 1.1e+04 29 44 .. 261 276 .. 245 288 .. 0.50 2 ! 123.8 24.5 1.7e-40 2.7e-36 1 91 [] 351 441 .. 351 441 .. 0.98 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.69 FAM27 29 qkrqaamreialwatG 44 q+ q++ + +++G T215853_1 261 QEVQRKCDTTCRGRQG 276 2233333333444444 PP == domain 2 score: 123.8 bits; conditional E-value: 1.7e-40 FAM27 1 shtPkadpr.rkrLttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartkt 91 +h kadpr rkrLttglmtqaet+ke + +rqaam+e+alw tG+i+Pkth htgthtqt+Re+eRn+qrlRdrerRengrht+t ++ +t T215853_1 351 FHAAKADPRgRKRLTTGLMTQAETQKEVQ-QRQAAMQETALWFTGHIQPKTHKHTGTHTQTHREWERNTQRLRDRERRENGRHTHTQTKGHT 441 6899************************9.**********************************************************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 510 (0.0312768); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 3345.33 // Query: T215853_2 [L=724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 3340.71 // Query: T215853_3 [L=724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 3236.31 // Query: T376194_1 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 5550.86 // Query: T376194_2 [L=1299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5898.76 // Query: T376194_3 [L=1299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.71 # Mc/sec: 5234.11 // Query: T171328_1 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 15.0 0.0 0.03 14.4 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 1.9e-06 0.03 8 73 .. 1229 1295 .. 1227 1303 .. 0.84 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.9e-06 EEEEEECTTTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHH CS RNase_H 8 tDGsclgnsgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYv 73 DGs+ +g++ g+ v++ke+ + +l++ ++++ EL A +aLk l ++e+ +iyt Sk + T171328_1 1229 IDGSSWVIEGKRHNGYsVTDKETlVEAELGKLPNNWSAQTWELFASSQALKYL-QNEEGVIYTNSKLI 1295 59****9*********7778886433555778899****************86.667889****9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.76 # Mc/sec: 7731.77 // Query: T171328_2 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-99 331.9 3.5 9.3e-99 331.5 3.5 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 331.5 3.5 5.7e-103 9.3e-99 37 561 .] 390 924 .. 358 924 .. 0.84 Alignments for each domain: == domain 1 score: 331.5 bits; conditional E-value: 5.7e-103 ....XXXXXX.XXX.XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX. CS TLV_coat 37 qpdlCdlaggsqsswslpdqetksvksvaedlsakltaqslkpeCkkkpkr.tasaneklyvcPgearkraerrhcGglsslYeaewqCettgktywtaa 135 +dlC l + + + ++++ + + dl a ++ + C ++ + +n ++y+cPg++ + +c + ++++ w C t+ + + ++ T171328_2 390 AVDLCVLFPEPART-HEEQHNLPVIGAGSVDLAAGFGHSGSQTGCGSSKGAeKGLQNVDFYLCPGNHPDA----SCRDTYQFFCPDWTCVTLATYSGGST 484 56777777754444.444455555555677777777777789999877766588999**********886....455569***********987666665 PP ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXX.XXXX CS TLV_coat 136 sswdlitlkknktssktqevtqegscnkLilaftkkGkka..ktllwglrlyvsGydPlltfsirlkvkkl..............eevlkdqkpp.sqph 218 s l++ + + + ++cn+L++++ + ++ wglrly+ G d +++f+i+ k+ +++++++ + + T171328_2 485 RSSTLSISRVPH-----PKLCTRKNCNPLTITVHDPNAAQwyYGMSWGLRLYIPGFDVGTMFTIQKKILVSwsspkpigpltdlgDPIFQKHPDKvDLTV 579 555544444444.....46677889******999887766779********************9866665599*****9999999999887744404444 PP XXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX CS TLV_coat 219 plalplaretspekegtddrlldllqgayltLnatnpsltedCwlClesgppyyeaiavngsvsnktsapacslspqlkltlsevtgqgllig.....kv 313 pl +r +++++++++ l+++l g++ +Ln+t+p+l++dCwlCl+++ppyy+++ v+ ++ +c + p +lt+ +v+g+ ++ T171328_2 580 PLPFLVPR-PQLQQQHLQPSLMSILGGVHHLLNLTQPKLAQDCWLCLKAKPPYYVGLGVEATLKRGPL--SCHTRP-RALTIGDVSGNASCLIstgynLS 675 55444444.7799*********************************************8887766554..376666.57889999998766554777544 PP XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXX...XX.XXXXXXXXXX CS TLV_coat 314 Pkthqalcnkte.ktskgseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge...yiyaidepatRvkRepval.tlallLgGLg 408 + qa cn+ ++ + s + apn t+ ac+ glt c++ + + lCvl+++lP+++++sg+ + a e ++R a+ l++lL+GL+ T171328_2 676 ASPFQATCNQSLlTSISTSVSYQAPNNTWLACTSGLTRCINGTEPGP--LLCVLVHVLPQVYVYSGPegrQLIAPPELHPRLHQ---AVpLLVPLLAGLS 770 6677899**99977778888999*****************9987765..58**************9978888888888888888...5524799****** PP XXXXXXXXXXXXXX.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHH CS TLV_coat 409 iaagvgtGttglvs.tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqr 507 ia+ + Gt++lv+ + + +L++++++D ++l+++I l+ ++ slaevvlQN R LDlLfl +GGlCaAL E CCFya++sg+ + ++k +e+l++ T171328_2 771 IAGSAAIGTAALVQgETGLISLSQQVDADFSNLQSAIDILHSQVESLAEVVLQNCRCLDLLFLSQGGLCAALGESCCFYANQSGVIKGTVKKVRENLDRH 870 ************99678899******************************************************************************** PP HHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 508 qrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 q++ e+n w++++++ pwlttl+ + gpLl+lLL L++GPciln +++ik T171328_2 871 QQERENNIPWYQSMFNWNPWLTTLITGLAGPLLILLLSLIFGPCILNSFLNFIK 924 ****************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 8394.49 // Query: T171328_3 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.81 # Mc/sec: 7254.50 // Query: T008665_1 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.74 # Mc/sec: 1229.38 // Query: T008665_2 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.67 # Mc/sec: 1357.83 // Query: T008665_3 [L=317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.77 # Mc/sec: 1177.77 // Query: T171284_1 [L=3938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.75 # Mc/sec: 15021.26 // Query: T171284_2 [L=3938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.75 # Mc/sec: 15021.26 // Query: T171284_3 [L=3937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-116 388.9 16.5 2.7e-116 388.3 16.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 1.1 9.3 5.1 1.9 8.5 5.1 1.3 1 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 388.3 16.5 3.3e-120 2.7e-116 58 368 .] 569 851 .. 555 851 .. 0.89 Alignments for each domain: == domain 1 score: 388.3 bits; conditional E-value: 3.3e-120 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHH CS Transposase_22 58 kelkelieskakelealkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleerv 152 ++lke k+ +++k l e t +d + k+ + +e++t++++ sls ++d+ ee+v T171284_3 569 SKLKE----------------------------DVRIHHKEAGNLEKRLDEWLTIIDSVEKTLN-DLIELKTMAQKLRDECRSLSIQCDQQEEKV 634 44444............................4444445555555666666666666666655.45566666666665566************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS CS Transposase_22 153 saaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskras 247 s + +++e+++e k+r+k +k++eqslq+i+d+vkrPnlrliGv+es+ e+ +klen+l++ii+enfPnl+++a+++iqei+rtP+r++s+ra+ T171284_3 635 SVIV-KMNEMKQEEKFRDKIIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENRTKLENTLQDIIQENFPNLARQADIQIQEIQRTPQRYSSRRAT 728 *885.8***************************************************************************************** PP --EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHT CS Transposase_22 248 srhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdyls 342 +rhiivr+tkv++k+k+l+a+rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPa ls+i++Geik f dk+ lrd+++ T171284_3 729 PRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPANLSFISEGEIKSFTDKQILRDFVT 823 *********************************************************************************************** PP T-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 343 trPalkrllke..knerkdryqaleqar 368 trPal++llke ++er++ yq+l++++ T171284_3 824 TRPALQELLKEalNMERNNWYQSLQKHA 851 *************************996 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.1 0.00023 1.9 113 178 .. 570 635 .. 560 648 .. 0.64 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00023 ATG16 113 elqkleeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +l+++ + +++ +l++ +e + + +++ + l e++++ q l+DE +L +q+ q+Eek T171284_3 570 KLKEDVRIHHKEAGNLEKRLDEWLTIIDSVEKTLNDLIELKTMAQKLRDECRSLSIQCDQQEEKVS 635 33444444444444444444444444455555556689999**********************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.79u 0.44s 00:00:02.23 Elapsed: 00:00:00.88 # Mc/sec: 12798.96 // Query: T188376_1 [L=2380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 9201.05 // Query: T188376_2 [L=2380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 10475.04 // Query: T188376_3 [L=2380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 10316.33 // Query: T102653_1 [L=12761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 482 (0.0295597); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.94u 0.52s 00:00:04.46 Elapsed: 00:00:00.95 # Mc/sec: 38428.48 // Query: T102653_2 [L=12761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 465 (0.0285171); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.18u 0.53s 00:00:04.71 Elapsed: 00:00:01.12 # Mc/sec: 32307.13 // Query: T102653_3 [L=12761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 12.0 0.1 0.35 11.1 0.1 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.1 2.2e-05 0.35 24 59 .. 3201 3236 .. 3196 3254 .. 0.74 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2.2e-05 CENP-B_dimeris 24 eedeededeeddedddevpvpsfgeamayfamvkry 59 ++d+e+ed+++d ddd vp ++ + m+kr+ T102653_3 3201 DKDDENEDDDNDHDDDGRCVPVGYHMICTLLMMKRH 3236 567777777777777777777666677778888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.05u 0.51s 00:00:04.55 Elapsed: 00:00:01.06 # Mc/sec: 34440.61 // Query: T361772_1 [L=3160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.40s 00:00:01.63 Elapsed: 00:00:00.76 # Mc/sec: 11895.03 // Query: T361772_2 [L=3160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-24 85.6 5.8 1.2e-23 84.0 5.8 1.7 1 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.0 5.8 7.1e-28 1.2e-23 2 210 .. 420 627 .. 419 637 .. 0.86 Alignments for each domain: == domain 1 score: 84.0 bits; conditional E-value: 7.1e-28 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361772_2 420 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 512 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkrsgpsssplsspassrsqtperpakkvreeegqsssssaslksdkesqeekaaetptgkkqnsrsssptsgssrprKRK....ipLlp.... 192 +g+ l +++p + l+ p ++s pe++a kv + + +ss+ l+ +k++q++ a +++ + r ++ s r rKRK + p T361772_2 513 GGI-LLFGKPDPVPTVLPAPVPGCSLWPEKAALKVLGKD-HLPSSPGLLMVGKDMQPKDPAALGSSRSSPPR--ATGYRSHRSRKRKllgpL---Pqlqp 605 ***.7799***************************7777.89***************999988666666454..556667777777754442...12445 PP POM121 193 .......srrgeqltLPpppqlGys 210 ++r+e Ppp++l++ T361772_2 606 tpplqlrWDRDE---PPPPAKLPCL 627 9999999*****...6999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.39u 0.43s 00:00:01.81 Elapsed: 00:00:00.79 # Mc/sec: 11443.32 // Query: T361772_3 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.75 # Mc/sec: 12049.82 // Query: T316835_1 [L=7821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.44s 00:00:02.88 Elapsed: 00:00:00.84 # Mc/sec: 26636.37 // Query: T316835_2 [L=7821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.74u 0.52s 00:00:03.26 Elapsed: 00:00:00.90 # Mc/sec: 24860.61 // Query: T316835_3 [L=7820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 483 (0.029621); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.63u 0.45s 00:00:03.08 Elapsed: 00:00:00.86 # Mc/sec: 26013.59 // Query: T216197_1 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 733 (0.0449528); expected 326.1 (0.02) Passed bias filter: 483 (0.029621); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 4713.56 // Query: T216197_2 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.68 # Mc/sec: 4362.77 // Query: T216197_3 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.73 # Mc/sec: 4063.95 // Query: T277880_1 [L=2637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 597 (0.0366123); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:00.83 # Mc/sec: 9089.17 // Query: T277880_2 [L=2637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 10334.26 // Query: T277880_3 [L=2636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 642 (0.039372); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.71 # Mc/sec: 10621.34 // Query: T334069_1 [L=605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 2791.62 // Query: T334069_2 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 570 (0.0349565); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 2879.90 // Query: T334069_3 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 3141.71 // Query: T051320_1 [L=4974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.44s 00:00:02.64 Elapsed: 00:00:00.73 # Mc/sec: 19492.83 // Query: T051320_2 [L=4974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.41s 00:00:02.41 Elapsed: 00:00:00.82 # Mc/sec: 17353.38 // Query: T051320_3 [L=4974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.41s 00:00:02.16 Elapsed: 00:00:00.72 # Mc/sec: 19763.57 // Query: T265032_1 [L=239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.52 # Mc/sec: 1314.88 // Query: T265032_2 [L=239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1367.48 // Query: T265032_3 [L=238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-18 64.7 0.3 8.7e-18 64.1 0.3 1.2 1 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP Domain annotation for each model (and alignments): >> Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.1 0.3 5.3e-22 8.7e-18 11 89 .. 15 93 .. 9 94 .. 0.90 Alignments for each domain: == domain 1 score: 64.1 bits; conditional E-value: 5.3e-22 Sec3-PIP2_bind 11 vtksgrkevrlhkvKenengs..sfsigktWkLkeLklvegkdpdkddpeFdltfdkpykweaesskeknaFirsLvklyr 89 tk+ +ev++ vK+ + g +++++k+W+L++L++++gk++d+d+p Fdl+f+k+y +ea s++ k+aF+r++ kl + T265032_3 15 LTKK--EEVKIVMVKHYRIGLdeKYEVTKKWSLNDLQMIDGKEADTDNPFFDLHFKKVYSLEAYSCASKYAFARTVNKLNH 93 5677..57*******999554568****************************************************99975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 1418.49 // Query: T018735_1 [L=2869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-61 205.9 37.8 5.4e-36 124.1 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 0.0091 15.9 1.1 0.0091 15.9 1.1 2.9 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 15.7 4.7e-32 3.8e-28 3 96 .. 1786 1879 .. 1786 1880 .. 0.98 2 ! 124.1 14.1 6.6e-40 5.4e-36 184 304 .. 1964 2075 .. 1953 2076 .. 0.96 3 ? -7.2 18.9 2 1.6e+04 123 229 .. 2125 2235 .. 2096 2240 .. 0.67 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 4.7e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018735_1 1786 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1879 599*****************************************************************************************95 PP == domain 2 score: 124.1 bits; conditional E-value: 6.6e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018735_1 1964 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2052 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018735_1 2053 KLMNECDHLKESLFQYEREKAER 2075 **********************9 PP == domain 3 score: -7.2 bits; conditional E-value: 2 CCDC144C 123 rerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigkq 216 + d+++ ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++q T018735_1 2125 SQFDDFMAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQEQ 2222 44566777788888888888888888888763334677788888887777777666666677777888888888888886665555555554145566 PP CCDC144C 217 esleerlsqlqse 229 + +l ql+++ T018735_1 2223 AEHKKQLEQLNKD 2235 6666777777665 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 1.1 1.1e-06 0.0091 24 94 .. 1966 2035 .. 1962 2036 .. 0.95 2 ? -2.6 0.2 0.55 4.5e+03 59 80 .. 2077 2098 .. 2047 2106 .. 0.52 3 ? -1.0 10.8 0.18 1.5e+03 13 95 .. 2153 2232 .. 2141 2239 .. 0.82 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018735_1 1966 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2035 68999********************************************************76.9999986 PP == domain 2 score: -2.6 bits; conditional E-value: 0.55 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018735_1 2077 VVVRQLQQEAADSLKKLTMLES 2098 3456666666666666655554 PP == domain 3 score: -1.0 bits; conditional E-value: 0.18 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a++ +++++++ T018735_1 2153 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAEH--KKQLEQL 2232 4444.46789********************************************************99998866..5666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1148 (0.0704035); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.30u 0.29s 00:00:01.59 Elapsed: 00:00:00.64 # Mc/sec: 12824.56 // Query: T018735_2 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-17 61.1 9.6 8.6e-17 61.1 9.6 1.5 2 CCDC144C CCDC144C protein coiled-coil region 5.7e-09 36.2 0.0 5.7e-09 36.2 0.0 2.6 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 2.4 1.2 9.9e+03 28 107 .. 1347 1375 .. 1334 1384 .. 0.40 2 ! 61.1 9.6 1.1e-20 8.6e-17 96 185 .. 1878 1965 .. 1865 1967 .. 0.93 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 1.2 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018735_2 1347 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1375 22222221...................................................133333444444444444433 PP == domain 2 score: 61.1 bits; conditional E-value: 1.1e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018735_2 1878 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 1965 689**********************9554.57..89*****************************************************99 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 2.1 0.13 1.1e+03 25 45 .. 1336 1356 .. 1333 1384 .. 0.69 2 ? -4.5 0.9 2 1.6e+04 44 70 .. 1926 1952 .. 1922 1964 .. 0.73 3 ! 36.2 0.0 7e-13 5.7e-09 64 107 .. 2302 2344 .. 2298 2346 .. 0.95 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.13 DUF3496 25 snkteLekykqlyleelkvrk 45 n+ eLe+ +++y +e+++++ T018735_2 1336 KNREELERKEKQYKKEVEAKQ 1356 4789************99875 PP == domain 2 score: -4.5 bits; conditional E-value: 2 DUF3496 44 rksLsnklnktnerLaevstkllveke 70 ++ L ++l+kt+ + + ++ k+ ++ T018735_2 1926 NEFLTEQLSKTQIKFNTLKDKFRKKRD 1952 678888999999888888888766665 PP == domain 3 score: 36.2 bits; conditional E-value: 7e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018735_2 2302 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 2344 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.03u 0.28s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 13674.77 // Query: T018735_3 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-17 61.4 7.5 1.8e-16 60.3 7.5 1.4 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.3 7.5 1.1e-20 1.8e-16 3 69 .. 2242 2307 .. 2241 2309 .. 0.93 Alignments for each domain: == domain 1 score: 60.3 bits; conditional E-value: 1.1e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018735_3 2242 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 2307 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 561 (0.0344045); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.64 # Mc/sec: 12820.09 // Query: T212037_1 [L=3517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 13.4 0.1 0.031 13.0 0.1 1.1 1 NPR2 Nitrogen permease regulator 2 Domain annotation for each model (and alignments): >> NPR2 Nitrogen permease regulator 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.1 1.9e-06 0.031 238 274 .. 2143 2179 .. 2137 2185 .. 0.88 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.9e-06 NPR2 238 LtkqciqhLlyYkcielldiFqfsniYaptneigdFl 274 L+ + + hL++ +ci+ll i f +i +pt++i F+ T212037_1 2143 LISEKMWHLVFRSCISLLRIMAFGSIHVPTKDIISFF 2179 6777789**************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.63 # Mc/sec: 15970.70 // Query: T212037_2 [L=3517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.62 # Mc/sec: 16228.29 // Query: T212037_3 [L=3516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.64 # Mc/sec: 15716.68 // Query: T325381_1 [L=2892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-128 427.9 28.4 8.1e-128 426.2 28.4 1.7 1 Transposase_22 L1 transposable element 1.6e-17 63.6 0.6 3.2e-17 62.6 0.6 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 3.2e-08 32.9 0.7 7.3e-08 31.7 0.7 1.7 1 DUF1725 Protein of unknown function (DUF1725) 2.2e-07 31.0 0.0 4.2e-07 30.1 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 3e-07 30.2 0.9 8.3e-07 28.8 0.9 1.8 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.037 14.1 5.2 0.083 13.0 5.2 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 7.3 6.7 9.0 0.72 9.9 2.9 2.3 2 XhlA Haemolysin XhlA Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 426.2 28.4 3.5e-131 8.1e-128 2 368 .] 1123 1456 .. 1122 1456 .. 0.95 Alignments for each domain: == domain 1 score: 426.2 bits; conditional E-value: 3.5e-131 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX....... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekeentekqlkiikekqe 93 Gkk+ rk+++sk +++s+P+ke sssPa e++++++df+elr e++++++y+elke++++++ke+e +k+ +e + + T325381_1 1123 GKKQ---SRKTGHSKNQSNSPPPKECSSSPAK--EQSWMENDFDELR-EGFRRSNYSELKEEVQTHGKEVEnLEKKIDEWLTRITN------- 1202 8999...9***********************9..************8.8*********************9788888885444433....... PP ...........XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 94 ntskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid.revkerekrkkileqslqviqd 185 + k k+l+elkt ++e +e+ slssr d+leervs +ed+i+e++ e k+rekr+k++eqslq+i+d T325381_1 1203 -AEKS----LKDLMELKTMAREQCDECT------------------SLSSRRDQLEERVSVIEDQINEMK*EE-KFREKRIKRNEQSLQEIWD 1271 .2222....369********99999888..................***********************7776.9****************** PP HHTTTEEEEES----TT--HHHHHHHHHHHH.HHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEET CS Transposase_22 186 tvkrPnlrliGvdesedeqlkklenilnkii.eenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlk 277 ++krPnl l Gv+es+ e+++klen+l++ii e nfPnl+++a+++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvt k T325381_1 1272 YMKRPNLHLTGVPESDRENGTKLENTLQDII*E-NFPNLARQADIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHK 1363 *****************************9888.9********************************************************** PP TEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 278 GkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 k rltadlsaetl+arrew+ +++ilkek+fqPr++yPakls+i++Geik+f dk+ lrd+++trPalk+llke ++er+++yq+l++++ T325381_1 1364 RKVNRLTADLSAETLQARREWGTIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQILRDFVTTRPALKELLKEavNMERNNQYQSLQKHA 1456 ******************************************************************************************996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.6 0.6 1.4e-20 3.2e-17 1 83 [. 2002 2093 .. 2002 2095 .. 0.95 Alignments for each domain: == domain 1 score: 62.6 bits; conditional E-value: 1.4e-20 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCS CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsv 83 ipK g +g++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+ T325381_1 2002 IPKSGrdttkKGNFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGWLNI*ksiNVIQHINRTKDKNHMIVSIDAEKAFDKF 2093 788888888899***************************************************99999999999999*************97 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.7 3.1e-11 7.3e-08 1 19 [] 2723 2741 .. 2723 2741 .. 0.98 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 3.1e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS+ sQ T325381_1 2723 SFVGTWMKLETIILSKLSQ 2741 7*****************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.0 1.8e-10 4.2e-07 2 113 .] 1497 1715 .. 1493 1715 .. 0.77 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 1.8e-10 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................ 77 + Nvng ++ + + +l +++k++d+ v ++qE++ ++ +l+ + ++ + ++++ va+l++ + + + T325381_1 1497 SLNVNG----LNAPINRHRLPNWIKSQDPSVCCIQETHLTCRDAHRLKIkgWRKIYQANGKQKKAWVAILVSDKTDFKpakikrdkeghytmvk 1586 689999....67778899******************9999888877777883344455555555666666666665555666777777777777 PP ......................................EEEEEE-SS............................................... CS ......................................xxxxxxxxx............................................... RF Exo_endo_phos 78 ......................................vivlGDfNa............................................... 86 i++GDfN+ T325381_1 1587 gsiqqeeltilnvhapntgaprfmkqvlsdlqrdldshTIIMGDFNTplstldrstrqkvnkniqelnsalhqadlidiyrtlhpksaeytffs 1680 77777788888888888888888898889999999999*********99999999999999999999999999999999998888888888888 PP .......-BEEEEEEHHHHTTEEEEEEECCH...SSB CS .......xxxxxxxxxxxxxxxxxxxxxxxx...xxx RF Exo_endo_phos 87 .......rlDrilaskelatersgvldepla...SDH 113 +D+i+ sk+l + ++ a SDH T325381_1 1681 vphhtysKIDHIVGSKALLSKCKRIEIT--AnclSDH 1715 8888888889999998444443333333..2457888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 0.9 3.6e-10 8.3e-07 3 118 .. 1596 1718 .. 1594 1719 .. 0.77 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 3.6e-10 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng.. 87 i +v p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ +++ +eL + l++ +l + ++k+ tf s + T325381_1 1596 ILNVHAPNTG-APRFMKQVLSDLQRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKNIQELNSALHQADLIDIyrtLHPKSAeYTFFSVPHht 1685 5566665555.556667777777777776.89**************9888879***************996566634444446665444445 PP Exo_endo_phos_2 88 ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + + + +++SDH++i T325381_1 1686 YSKIDHIVGSKALLSKckRIEITANCLSDHSAI 1718 8***************986677789*****998 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 5.2 3.5e-05 0.083 6 99 .. 1155 1247 .. 1153 1249 .. 0.96 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 3.5e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e + R +++++ +e+ ++ ++l+++++e ++ ++ k+ + +++ k a e +e +l+ + ++le++++ +e+++++ T325381_1 1155 WMENDFDELREGFR-RSNYSELKEEVQTHGKEVENLEKKIDEWLTRITNAEKSLKDLMELKTMAREQCDECTSLSSRRDQLEERVSVIEDQINE 1247 6789*********6.779*************************************************************************997 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 2.9 0.00031 0.72 8 46 .. 1174 1212 .. 1173 1215 .. 0.90 2 ? -1.1 0.4 0.86 2e+03 12 30 .. 1230 1248 .. 1224 1274 .. 0.66 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00031 XhlA 8 rietkldnleervdkleekaaeaeekiknleedlkkies 46 ++++ + +++++v+ le+k +e +++i n+e+ lk++ + T325381_1 1174 ELKEEVQTHGKEVENLEKKIDEWLTRITNAEKSLKDLME 1212 578899999**************************9865 PP == domain 2 score: -1.1 bits; conditional E-value: 0.86 XhlA 12 kldnleervdkleekaaea 30 + d leerv+ +e+ +e+ T325381_1 1230 RRDQLEERVSVIEDQINEM 1248 5577777777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 638 (0.0391267); expected 326.1 (0.02) Passed bias filter: 239 (0.0146572); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.19u 0.32s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 12728.49 // Query: T325381_2 [L=2892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-11 44.2 0.1 3.3e-11 43.0 0.1 1.6 1 Gag_p30 Gag P30 core shell protein 0.0017 18.2 0.7 0.0049 16.8 0.7 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 1.9 8.2 6.4 0.46 10.2 1.9 2.4 2 zf-CCHC_2 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 0.1 6.1e-15 3.3e-11 3 163 .. 401 564 .. 399 572 .. 0.84 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 6.1e-15 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllq.tlltteerqrvllearknvpgedgrptqlp.nevdeafpltrpdwdyeta. 99 pfs s+l + k++ sfs +p + + ++ + +++ tw d +l tl+ +++++ a +v + ++ + rp w+y+ + T325381_2 401 IPFSLSNLSQIKKRLRSFSSNPDTYIKKLKYLTPSYKFTWLDLHIILSsTLFPGKKNKTKQSVACSSVACQRSSSARPY*APRGRCSSPRRPSWEYQPT* 500 69*****************************************99886266666655554555666666666555553343344555669********** PP Gag_p30 100 egreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpe 163 +g+ s + l++gl+ aa++ + k+ke+ q +e+pa fl rl+ea ++yt dp++ e T325381_2 501 PGQASHNHVITCLITGLNKAAHKAIIFEKLKEISQRANENPAEFLSRLTEALQKYTLVDPTSRE 564 ****999999**************************************************9875 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.7 8.9e-07 0.0049 3 17 .. 775 789 .. 774 790 .. 0.90 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 8.9e-07 TSSSSSSSSTTTTST CS zf-CCHC 3 CynCGepGHiardCp 17 C C+++GH+++dCp T325381_2 775 CPACQQTGHWKSDCP 789 667***********9 PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 1.9 8.5e-05 0.46 6 20 .. 775 789 .. 775 790 .. 0.93 2 ? -2.4 0.2 0.72 3.9e+03 10 17 .. 2168 2175 .. 2168 2175 .. 0.88 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 8.5e-05 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C +C++ GH+ +dCP T325381_2 775 CPACQQTGHWKSDCP 789 778************ PP == domain 2 score: -2.4 bits; conditional E-value: 0.72 zf-CCHC_2 10 gkkGHyIq 17 g+kGH I+ T325381_2 2168 GNKGHSIR 2175 78***997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.63 # Mc/sec: 13132.57 // Query: T325381_3 [L=2891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-24 85.7 0.1 5.4e-24 84.8 0.1 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.8 0.1 3.3e-28 5.4e-24 82 221 .. 2091 2255 .. 2091 2256 .. 0.93 Alignments for each domain: == domain 1 score: 84.8 bits; conditional E-value: 3.3e-28 CSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEE CS RVT_1 82 svpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDi 170 +++ ++ l++l++ +++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn +++ l r ++++ ++v+l+++aDD+ T325381_3 2091 QIQRHFMLKTLNKSSIDGTYLKIIRAMYDKPTANIILNGQKLEALPLKTGTRQGCPLSPLLFNTVLEVLARAIQQEKeikgiqlgkEEVKLSLFADDM 2188 68999***********************************99*********************************99********************* PP EEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEE CS RVT_1 171 lilskskeelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvt 221 +++ +++ + l+ ++++ k sg+ki+ +K++++l+ ++ s++++y G++ T325381_3 2189 IVYLENPIVSAQNLKLIRNFSKVSGYKIHVQKSQAFLYtnnrqtesqimsEFpftiASKRIQYPGIQ 2255 ************************************9988877776666511556788888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 13339.77 // Query: T027893_1 [L=950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 4685.84 // Query: T027893_2 [L=949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 313 (0.0191954); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.68 # Mc/sec: 3992.54 // Query: T027893_3 [L=949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 4113.53 // Query: T062585_1 [L=2605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.75 # Mc/sec: 9936.62 // Query: T062585_2 [L=2605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.73 # Mc/sec: 10208.85 // Query: T062585_3 [L=2604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.75 # Mc/sec: 9932.80 // Query: T374804_1 [L=440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 2247.80 // Query: T374804_2 [L=439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 2128.65 // Query: T374804_3 [L=439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-05 22.2 0.5 9.8e-05 21.6 0.5 1.2 1 NPIP Nuclear pore complex interacting protein (NPIP) Domain annotation for each model (and alignments): >> NPIP Nuclear pore complex interacting protein (NPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.5 6e-09 9.8e-05 147 194 .. 72 119 .. 59 121 .. 0.88 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 6e-09 NPIP 147 eenGkldmkeirtykkmfqraqelrrraedsyrckitpsarkalcnrv 194 +n ++ + + + +km+++++e ++ ed+yrc+i+ s rka +n++ T374804_3 72 RNNTRFSLMKCLSIRKMMEDTEEQQNWVEDYYRCQIATSERKAYDNWL 119 67888888899999********************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 2025.65 // Query: T291133_1 [L=2677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.72 # Mc/sec: 10636.72 // Query: T291133_2 [L=2676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-46 156.2 2.5 1.3e-45 155.5 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0008 19.2 1.0 0.0017 18.1 1.0 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.5 2.5 1.6e-49 1.3e-45 1 222 [] 2096 2352 .. 2096 2352 .. 0.92 Alignments for each domain: == domain 1 score: 155.5 bits; conditional E-value: 1.6e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291133_2 2096 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 2193 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291133_2 2194 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 2291 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291133_2 2292 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2352 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 1.0 2.1e-07 0.0017 25 48 .. 1175 1198 .. 1172 1201 .. 0.90 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 2.1e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291133_2 1175 LEKRLDKMLTRITSLEKNINDLMQ 1198 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 655 (0.0401693); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.29u 0.42s 00:00:01.71 Elapsed: 00:00:00.82 # Mc/sec: 9336.07 // Query: T291133_3 [L=2676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.79 # Mc/sec: 9690.61 // Query: T277135_1 [L=2496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.83 # Mc/sec: 8603.17 // Query: T277135_2 [L=2496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 9395.57 // Query: T277135_3 [L=2496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:00.79 # Mc/sec: 9038.77 // Query: T138095_1 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 8811.36 // Query: T138095_2 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:00.75 # Mc/sec: 8223.93 // Query: T138095_3 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.63 # Mc/sec: 9790.40 // Query: T316804_1 [L=356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1006 (0.0616951); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 1818.67 // Query: T316804_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1024 (0.062799); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 1880.73 // Query: T316804_3 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 828 (0.0507789); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 1813.56 // Query: T344061_1 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.73 # Mc/sec: 14409.96 // Query: T344061_2 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.83 # Mc/sec: 12673.82 // Query: T344061_3 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.87 # Mc/sec: 12091.12 // Query: T056000_1 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.63 # Mc/sec: 1839.11 // Query: T056000_2 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 2228.15 // Query: T056000_3 [L=404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.54 # Mc/sec: 2140.32 // Query: T052012_1 [L=2944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 11537.37 // Query: T052012_2 [L=2944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.82 # Mc/sec: 10271.08 // Query: T052012_3 [L=2944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.75 # Mc/sec: 11229.71 // Query: T103720_1 [L=3378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.39s 00:00:01.70 Elapsed: 00:00:00.76 # Mc/sec: 12715.64 // Query: T103720_2 [L=3378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.5 0.0 0.056 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.059 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.06 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.3 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2933 3268 .. 2933 3268 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103720_2 2933 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3018 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103720_2 3019 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3075 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103720_2 3076 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3168 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103720_2 3169 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3261 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103720_2 3262 QLLQNHA 3268 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.056 1 72 [. 3303 3372 .. 3303 3377 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103720_2 3303 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3372 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2957 3080 .. 2923 3087 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103720_2 2957 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3050 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103720_2 3051 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3080 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 2998 3087 .. 2996 3089 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103720_2 2998 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3087 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 2984 3085 .. 2983 3087 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103720_2 2984 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3078 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103720_2 3079 QEIWDYV 3085 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 2986 3080 .. 2982 3087 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103720_2 2986 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3080 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1008 1022 .. 994 1025 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 2991 3043 .. 2984 3049 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103720_2 1008 SKKKKRKKERKKR-----KK 1022 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103720_2 2991 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3043 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3016 3075 .. 2996 3083 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103720_2 3016 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3075 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 909 (0.0557464); expected 326.1 (0.02) Passed bias filter: 358 (0.0219551); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.86u 0.38s 00:00:02.24 Elapsed: 00:00:00.82 # Mc/sec: 11785.22 // Query: T103720_3 [L=3377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.78 # Mc/sec: 12385.93 // Query: T051635_1 [L=3426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.71 # Mc/sec: 13804.51 // Query: T051635_2 [L=3425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.79 # Mc/sec: 12402.97 // Query: T051635_3 [L=3425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.42s 00:00:01.72 Elapsed: 00:00:00.81 # Mc/sec: 12096.72 // Query: T266522_1 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-55 188.3 0.4 2.2e-55 187.9 0.4 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 187.9 0.4 1.3e-59 2.2e-55 262 368 .] 225 333 .. 223 333 .. 0.98 Alignments for each domain: == domain 1 score: 187.9 bits; conditional E-value: 1.3e-59 HHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 262 dkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..k 354 k+l+a+r kGrvt+kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yP kls+i++Geik+f dk+ lrd+++trPalk+llke + T266522_1 225 GKMLRAARKKGRVTYKGKPIRLTVDLSAETLRARREWGPIFNILKEKNFQPRISYPVKLSFISEGEIKYFTDKQVLRDFVTTRPALKELLKEalN 319 69********************************************************************************************* PP -SSXSSXXXXXXXX CS Transposase_22 355 nerkdryqaleqar 368 +er++ryq l++++ T266522_1 320 MERHNRYQLLQNHA 333 ************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 3719.08 // Query: T266522_2 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-13 49.9 0.7 2.7e-13 49.4 0.7 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.4 0.7 1.7e-17 2.7e-13 225 263 .. 188 226 .. 182 227 .. 0.94 Alignments for each domain: == domain 1 score: 49.4 bits; conditional E-value: 1.7e-17 HHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 225 keanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 k n++iqei+rtP+r++s+ra++rhiiv +tkv++k+k T266522_2 188 KAGNIQIQEIHRTPQRYSSRRATPRHIIVIFTKVEMKEK 226 6779**********************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3187.78 // Query: T266522_3 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-30 106.6 1.7 1.9e-30 105.9 1.7 1.3 1 Transposase_22 L1 transposable element 1.1e-10 41.7 0.0 2.3e-10 40.6 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 5e-10 39.1 2.4 6.8e-10 38.7 1.4 1.8 2 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.9 1.7 3.5e-34 1.9e-30 159 231 .. 122 194 .. 117 210 .. 0.92 Alignments for each domain: == domain 1 score: 105.9 bits; conditional E-value: 3.5e-34 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---E CS Transposase_22 159 ieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanvii 231 ie+ ++e+k+rekr+k++eqslq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++a T266522_3 122 IENPKQEGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQATFRF 194 7999****************************************************************98765 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.6 0.0 4.3e-14 2.3e-10 1 113 [] 367 586 .. 367 586 .. 0.84 Alignments for each domain: == domain 1 score: 40.6 bits; conditional E-value: 4.3e-14 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + + + ++++ gva+l++ + + + T266522_3 367 LTLNVNG----LNAPTKRHRLANWIKSQDPSVCCIQETHFMCRDTHRLKIkgWRKIFQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimvkg 458 699****....67778899******************98877766666667755566677788889999999999966667889999999999999 PP .....................................EEEEEE-SS.................................................. CS .....................................xxxxxxxxx.................................................. RF Exo_endo_phos 78 .....................................vivlGDfNa.................................................. 86 +++GDfN+ T266522_3 459 siqqeeltilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplltldrstrqkvnkdtqelnsalhqadlihiyrtlhpksteytffsaph 554 99999***************99999999999999999999******99999999999999999999999999999999999999999999999999 PP ....-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ....xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ....rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T266522_3 555 htysKIDHILGSKALLSKCKRTEIITNClSDH 586 988888******95555444444443337888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 0.96 5.2e+03 12 28 .. 164 181 .. 138 184 .. 0.71 2 ! 38.7 1.4 1.3e-13 6.8e-10 2 118 .. 466 589 .. 465 590 .. 0.84 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.96 Exo_endo_phos_2 12 s.eelenllstlekllse 28 + e+ ++l++tl+++++e T266522_3 164 DgENGTKLENTLQDIIQE 181 345566677777777765 PP == domain 2 score: 38.7 bits; conditional E-value: 1.3e-13 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T266522_3 466 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLLTLDRSTRQKvNKDTQELNSALHQADLIHIyrtLHPKSTeYTFFSAPHhtY 557 7999***9999.777777778888888876.89***************888889****************988777444544577766666568 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH++i T266522_3 558 SKIDHILGSKALLSKckRTEIITNCLSDHSAI 589 ***************98666779******998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 561 (0.0344045); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 2700.45 // Query: T176636_1 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 2600.75 // Query: T176636_2 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.67 # Mc/sec: 2557.67 // Query: T176636_3 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.65 # Mc/sec: 2636.36 // Query: T138153_1 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 7510.69 // Query: T138153_2 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.34 11.0 1.9 89 3.2 0.0 3.8 4 Flu_C_NS2 Influenza C non-structural protein (NS2) Domain annotation for each model (and alignments): >> Flu_C_NS2 Influenza C non-structural protein (NS2) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 0.0055 89 43 52 .. 363 372 .. 354 374 .. 0.85 2 ? 1.8 0.0 0.015 2.5e+02 43 52 .. 412 421 .. 406 424 .. 0.84 3 ? 1.7 0.0 0.016 2.6e+02 43 52 .. 461 470 .. 455 472 .. 0.84 4 ? -1.8 0.0 0.2 3.3e+03 43 52 .. 510 519 .. 506 521 .. 0.83 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.0055 Flu_C_NS2 43 essfaPrtWe 52 ss+aPrtW+ T138153_2 363 MSSLAPRTWQ 372 59*******7 PP == domain 2 score: 1.8 bits; conditional E-value: 0.015 Flu_C_NS2 43 essfaPrtWe 52 ss aPrtW+ T138153_2 412 TSSRAPRTWQ 421 5999*****7 PP == domain 3 score: 1.7 bits; conditional E-value: 0.016 Flu_C_NS2 43 essfaPrtWe 52 ss aPrtW+ T138153_2 461 TSSRAPRTWQ 470 5999*****7 PP == domain 4 score: -1.8 bits; conditional E-value: 0.2 Flu_C_NS2 43 essfaPrtWe 52 ss aPr W+ T138153_2 510 TSSRAPRMWQ 519 5999*****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.67 # Mc/sec: 7959.09 // Query: T138153_3 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 7842.04 // Query: T366712_1 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 11.8 0.0 0.33 10.9 0.0 1.4 1 DUF2784 Protein of Unknown function (DUF2784) 1.6 8.4 6.9 5.2 6.8 0.9 2.8 2 zf-C3H1 Putative zinc-finger domain Domain annotation for each model (and alignments): >> DUF2784 Protein of Unknown function (DUF2784) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 4.1e-05 0.33 33 61 .. 171 200 .. 170 210 .. 0.85 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 4.1e-05 DUF2784 33 w.lHlaaialvaasellglaCplTdlenql 61 w Hl+ +++a+ gl CplT+le+ T366712_1 171 WiCHLFFRLWMALGDTPGLRCPLTQLEEGW 200 448***********************9855 PP >> zf-C3H1 Putative zinc-finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.9 0.00064 5.2 8 21 .. 986 999 .. 985 1000 .. 0.86 2 ? 4.1 0.6 0.0044 36 1 12 [. 1137 1148 .. 1137 1151 .. 0.90 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.00064 zf-C3H1 8 GGvCnD.dsCefQHF 21 G +C ++C+ QHF T366712_1 986 G-ACSAvENCQHQHF 999 5.899999******* PP == domain 2 score: 4.1 bits; conditional E-value: 0.0044 zf-C3H1 1 LCpyElaGGvCn 12 LCpyE +G +C+ T366712_1 1137 LCPYENRGWICP 1148 8*******9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 5141.32 // Query: T366712_2 [L=1257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 5895.19 // Query: T366712_3 [L=1257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 6785.03 // Query: T220592_1 [L=2256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 11734.60 // Query: T220592_2 [L=2256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1356 (0.0831596); expected 326.1 (0.02) Passed bias filter: 386 (0.0236723); expected 326.1 (0.02) Passed Vit filter: 187 (0.0114682); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.38s 00:00:02.21 Elapsed: 00:00:00.69 # Mc/sec: 9353.67 // Query: T220592_3 [L=2255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.57 # Mc/sec: 11122.71 // Query: T052974_1 [L=7651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.38s 00:00:02.02 Elapsed: 00:00:00.69 # Mc/sec: 31722.04 // Query: T052974_2 [L=7651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.36s 00:00:01.98 Elapsed: 00:00:00.68 # Mc/sec: 32188.54 // Query: T052974_3 [L=7651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:00.68 # Mc/sec: 32188.54 // Query: T278160_1 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.62 10.0 23.1 0.48 10.3 7.7 2.4 2 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 14.0 0.00086 14 73 120 .. 470 517 .. 451 527 .. 0.47 2 ? 10.3 7.7 3e-05 0.48 62 126 .. 511 577 .. 509 584 .. 0.60 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.00086 Trypan_PARP 73 eeegeeetepeeegeeetepeeeeepepepetepepepepepepepep 120 + ++++ ++p +++++ ++p +++p+ +p + p p p+ +p+p+p+p T278160_1 470 DSHPHPHSHPHPHSHPHSHPHLHPHPHSHPHSHPHPHPHSHPHPHPHP 517 333333333333333333333333333333333333333333333333 PP == domain 2 score: 10.3 bits; conditional E-value: 3e-05 Trypan_PARP 62 depeeeeetepeeegeeetepeeegeeetepeeeeepe..pepetepepepepepepepepGaatlk 126 ++p +++ ++p ++++ ++p+ ++++ ++p ++ p+ p+p + p+p+ + +p+ p + tl T278160_1 511 PHPHPHPHSHPHSHSHPHSHPDSHSHPHSHPHPHLLPHshPHPHPHSHPNPHSHSHPHSYPHTLTLT 577 5677777777777777777787777777777775444400444444444444455555556666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 607 (0.0372256); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.57 # Mc/sec: 5958.42 // Query: T278160_2 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.46 8.8 1.3 0.85 7.9 1.3 1.3 1 Neisseria_TspB Neisseria meningitidis TspB protein 3.4 7.5 18.5 0.04 13.8 7.9 2.4 3 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Neisseria_TspB Neisseria meningitidis TspB protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 1.3 0.0001 0.85 321 386 .. 403 470 .. 396 479 .. 0.80 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0001 Neisseria_TspB 321 dvqviprpdltpasaeapna..qplpevspaenpannpdpdenpgtrpnpepdpdlnpdanpdtdgqp 386 d+ + prp p p++ p p + p p+p+ p +p p p p p + td q T278160_2 403 DLYLHPRPHSHPHPHTLPHShsHSHPHSHPHQHPHPHPHPHPYPHPHPHPHPYPHPHPHTHIHTDIQT 470 77788999999988888876115678899999999999999999999999999999999888888775 PP >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 7.9 4.9e-06 0.04 71 120 .. 409 460 .. 404 469 .. 0.42 2 ? 0.9 0.1 0.048 3.9e+02 96 116 .. 578 598 .. 567 603 .. 0.47 3 ? -3.2 0.3 0.86 7e+03 102 116 .. 637 651 .. 628 653 .. 0.47 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 4.9e-06 Trypan_PARP 71 epeeegeeetepeeegeeetepee..eeepepepetepepepepepepepep 120 p ++++ t p +++ ++ + +++p+p+p + p p p+p+p p+p+p T278160_2 409 RPHSHPHPHTLPHSHSHSHPHSHPhqHPHPHPHPHPYPHPHPHPHPYPHPHP 460 4444445555454444433333330033333333333333333333333333 PP == domain 2 score: 0.9 bits; conditional E-value: 0.048 Trypan_PARP 96 eepepepetepepepepepep 116 + +p+p + p p p+ +p+p T278160_2 578 PGSHPHPHSHPHPRPHLHPHP 598 223333333333333333333 PP == domain 3 score: -3.2 bits; conditional E-value: 0.86 Trypan_PARP 102 petepepepepepep 116 p++ p p p+ +p+p T278160_2 637 PQSHPHPRPHLHPHP 651 333333333333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 933 (0.0572182); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 5958.42 // Query: T278160_3 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 854 (0.0523734); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.59 # Mc/sec: 5857.43 // Query: T211012_1 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 2738.98 // Query: T211012_2 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2900.10 // Query: T211012_3 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 2733.68 // Query: T052042_1 [L=868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1065 (0.0653134); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 4281.38 // Query: T052042_2 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1018 (0.062431); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 4203.97 // Query: T052042_3 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1005 (0.0616338); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.60 # Mc/sec: 4133.90 // Query: T128045_1 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 1763.31 // Query: T128045_2 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 1731.82 // Query: T128045_3 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 1763.31 // Query: T035457_1 [L=2833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 11102.37 // Query: T035457_2 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.87 9.7 41.4 1.2 9.2 28.7 2.7 2 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 4.8 0.001 17 13 47 .. 1251 1285 .. 1164 1305 .. 0.57 2 ? 9.2 28.7 7.6e-05 1.2 14 108 .. 1409 1501 .. 1395 1550 .. 0.53 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.001 DUF1777 13 drrrdrrdrdr.rdrdrdrdrsrdrrsrerersrsr 47 d+rr++r++++ + r++ ++r+++rr+ r++ r++ T035457_2 1251 DERRKKRKKEKkEGRKK-KERKEERREGGRKEGRKE 1285 11111111111001111.111111111122222222 PP == domain 2 score: 9.2 bits; conditional E-value: 7.6e-05 DUF1777 14 rrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr......kesekrsesksskeskersrekekkeskkeeeee 105 r+r+r+ +++rdrdr+ +r +r+r+r+++ +r+r+ ++r+rd++r+r+s+r+++ + ++e + + e+++ ++++ ++e+e+e T035457_2 1409 RERHRETETERDRDRETER---KRDRDRHTETDRERQG-YKERDRDKERDRESERDRDi*gegqR----EREAETEAERETVTKREGGGGGETESERE 1498 2222222222344443333...3334444444444443.55666666665555555556654321....22222222222222222222222222222 PP DUF1777 106 ded 108 +++ T035457_2 1499 RQR 1501 222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 721 (0.0442169); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.58u 0.43s 00:00:02.01 Elapsed: 00:00:00.78 # Mc/sec: 10387.01 // Query: T035457_3 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.64 10.2 26.8 0.72 10.0 4.8 2.8 2 Bactofilin Polymer-forming cytoskeletal Domain annotation for each model (and alignments): >> Bactofilin Polymer-forming cytoskeletal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 4.8 4.4e-05 0.72 13 62 .. 2279 2327 .. 2273 2336 .. 0.66 2 ? 6.7 11.9 0.00048 7.8 7 80 .. 2408 2482 .. 2402 2499 .. 0.76 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 4.4e-05 Bactofilin 13 levegdlridGkveGdieakgklvvgeggkveGnika.eevvvaGtvkGnv 62 ++v+++ +++ +v+G+++ + + v+ +g+v+G++++ +v+v+G+v+ +v T035457_3 2279 VRVQASRQVSMQVSGQVSVQ--VSVQVSGQVSGQVSVlVSVQVNGQVSVQV 2327 55666667777777777554..77777788888888777788888776333 PP == domain 2 score: 6.7 bits; conditional E-value: 0.00048 Bactofilin 7 tkikGelevegdlridGkveGdieakgklvvgeggkveGnika.eevvvaGtvkGnveaee..kvelkktakveGdi 80 + ++G+++ + +++++G +G+++ +g++ v + +v+G+++ +v+v+G+v+ +v +++ +v++ + +v+ ++ T035457_3 2408 VLLSGKVSRQVSVQVSG--QGSVQVSGQVSVLVSVQVSGQVSRqVSVQVSGQVSVQVSVQAsrQVSVLVSVQVSVQV 2482 66789999999999999..999*9999*************999556*****97765555442277766666665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1125 (0.068993); expected 326.1 (0.02) Passed bias filter: 251 (0.0153931); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.80u 0.38s 00:00:02.18 Elapsed: 00:00:00.76 # Mc/sec: 10660.36 // Query: T171285_1 [L=3477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.67 # Mc/sec: 14846.43 // Query: T171285_2 [L=3476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.68 # Mc/sec: 14623.89 // Query: T171285_3 [L=3476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-116 389.1 16.5 2.3e-116 388.5 16.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.91 9.5 5.1 1.6 8.7 5.1 1.3 1 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 388.5 16.5 2.8e-120 2.3e-116 58 368 .] 569 851 .. 555 851 .. 0.89 Alignments for each domain: == domain 1 score: 388.5 bits; conditional E-value: 2.8e-120 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHH CS Transposase_22 58 kelkelieskakelealkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleerv 152 ++lke k+ +++k l e t +d + k+ + +e++t++++ sls ++d+ ee+v T171285_3 569 SKLKE----------------------------DVRIHHKEAGNLEKRLDEWLTIIDSVEKTLN-DLIELKTMAQKLRDECRSLSIQCDQQEEKV 634 44444............................4444445555555666666666666666655.45566666666665566************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS CS Transposase_22 153 saaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskras 247 s + +++e+++e k+r+k +k++eqslq+i+d+vkrPnlrliGv+es+ e+ +klen+l++ii+enfPnl+++a+++iqei+rtP+r++s+ra+ T171285_3 635 SVIV-KMNEMKQEEKFRDKIIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENRTKLENTLQDIIQENFPNLARQADIQIQEIQRTPQRYSSRRAT 728 *885.8***************************************************************************************** PP --EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHT CS Transposase_22 248 srhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdyls 342 +rhiivr+tkv++k+k+l+a+rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPa ls+i++Geik f dk+ lrd+++ T171285_3 729 PRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPANLSFISEGEIKSFTDKQILRDFVT 823 *********************************************************************************************** PP T-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 343 trPalkrllke..knerkdryqaleqar 368 trPal++llke ++er++ yq+l++++ T171285_3 824 TRPALQELLKEalNMERNNWYQSLQKHA 851 *************************996 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 5.1 0.0002 1.6 113 178 .. 570 635 .. 560 648 .. 0.64 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0002 ATG16 113 elqkleeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +l+++ + +++ +l++ +e + + +++ + l e++++ q l+DE +L +q+ q+Eek T171285_3 570 KLKEDVRIHHKEAGNLEKRLDEWLTIIDSVEKTLNDLIELKTMAQKLRDECRSLSIQCDQQEEKVS 635 33444444444444444444444444455555556689999**********************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.55u 0.41s 00:00:01.96 Elapsed: 00:00:00.78 # Mc/sec: 12749.03 // Query: T336887_1 [L=1773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.74 # Mc/sec: 6854.39 // Query: T336887_2 [L=1773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 7246.07 // Query: T336887_3 [L=1773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 7044.79 // Query: T073913_1 [L=283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00032 20.9 11.7 0.0027 17.9 11.7 2.2 1 WAP WAP-type (Whey Acidic Protein) 'four-disulfide core Domain annotation for each model (and alignments): >> WAP WAP-type (Whey Acidic Protein) 'four-disulfide core' # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 11.7 1.7e-07 0.0027 15 46 .] 184 225 .. 149 225 .. 0.66 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 1.7e-07 WAP 15 a.........stcsdeCssDsdCpgnqKCC.ssgcgrvCveP 46 a C +D+dC++ +KCC + cg +C++P T073913_1 184 AskqqskistYCSGIPCINDYDCRDLRKCCgTFRCGLRCIHP 225 044553444344556788************8778**88**98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1445.74 // Query: T073913_2 [L=283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.60 # Mc/sec: 1349.36 // Query: T073913_3 [L=283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 1305.83 // Query: T236685_1 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.35 9.5 21.4 0.096 11.4 0.8 4.8 5 DUF2600 Protein of unknown function (DUF2600) Domain annotation for each model (and alignments): >> DUF2600 Protein of unknown function (DUF2600) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.3 0.0021 35 29 129 .. 354 453 .. 340 520 .. 0.74 2 ? 2.1 0.5 0.0041 66 71 127 .. 863 919 .. 856 930 .. 0.81 3 ? -0.1 0.5 0.019 3.1e+02 32 162 .. 913 1051 .. 908 1065 .. 0.66 4 ? 5.5 0.1 0.00037 6 29 127 .. 1144 1241 .. 1134 1258 .. 0.87 5 ? 11.4 0.8 5.9e-06 0.096 28 125 .. 1261 1356 .. 1247 1360 .. 0.88 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.0021 DUF2600 29 sleekkfhceggsvyallagekkeelirlivayqtisdYLdnlcdrstsldekdfrqLhqa.lldaltpeaelsdYYkyreeqdDggYLaaLvetCqevl 127 sl + hc+g+ v++ + + ++ i+ + ++ s Y +c ++++++++ + +h+ +++a+t++ +l + +++++ + + Y ++Lv++C +++ T236685_1 354 SLVHACNHCTGSPVCTHTCTPPEQASISTLPGARMQSLY-RVICVQTHVYTPRTGKYIHTPwCTHAITVQDHLCAHTRVHPQ-NRQVYPHSLVHACNHCT 451 677777899999999998888888888887776655555.68999**************974689*********99999986.5689*********9886 PP DUF2600 128 kk 129 + T236685_1 452 GS 453 54 PP == domain 2 score: 2.1 bits; conditional E-value: 0.0041 DUF2600 71 lcdrstsldekdfrqLhqal.ldaltpeaelsdYYkyreeqdDggYLaaLvetCqevl 127 +c ++++++++ + +h+ + ++ +t+e+++ +++ ++q+ + Y ++Lv++C +++ T236685_1 863 ICVQTHVYTPRTGKYIHTTCcTHTITVESSVC-THTHVQHQNRQVYPHSLVHACNQCT 919 68888999999999999876155566666555.578999***************9986 PP == domain 3 score: -0.1 bits; conditional E-value: 0.019 DUF2600 32 ekkfhceggsvyallagekkeelirlivayqtisdYLdnlcdrstsldekdfrqLhqa.lldaltpeaelsdYYkyreeqdDggYLaaLvet...... 122 + +c+g+sv++ + + ++ + i+ +i+ lc ++++++++ + +h+ +++a+t++++l + ++ + q+ + Y ++Lv+ T236685_1 913 HACNQCTGSSVCTHMYTPRTGKYIHTPWCTHAIT-VQGHLCAHTHVYTPRTDKYIHTTwCTHAITVQSHLCAH-THVQPQNRQVYPHSLVHVynhctg 1008 5556788888888888888888887766655554.34689999999999999999987357888888887775.566667788898888874222222 PP DUF2600 123 ...CqevlkklpsyelvreellelaelysdLqvykhvkkeere 162 C+++++ ++ ++ +++ +ly + v+ hv++++r+ T236685_1 1009 spvCKHTCTPPEQASISTLPGARMQSLYRVICVHTHVHPQNRQ 1051 2224444444444444444456666777777777777777765 PP == domain 4 score: 5.5 bits; conditional E-value: 0.00037 DUF2600 29 sleekkfhceggsvyallagekkeelirlivayqtisdYLdnlcdrstsldekdfrqLhqa.lldaltpeaelsdYYkyreeqdDggYLaaLvetCqe 125 sl + hc+g+sv+ + + +++ i+ + ++ s Y +c ++++++++ + +h+ +++a+t++ +l + +++++ + + Y ++Lv++C + T236685_1 1144 SLVHACNHCTGSSVCKHTCTPPEQTSISTLPGARMQSLY-KVICVQTHVYTPRTGKYIHTTwCTHAITVQGHLCAHTRVHPQ-NRQVYPHSLVHACNH 1239 7778888***********999999999998877665555.89*****************984689**********9999986.5689*********98 PP DUF2600 126 vl 127 ++ T236685_1 1240 CT 1241 75 PP == domain 5 score: 11.4 bits; conditional E-value: 5.9e-06 DUF2600 28 asleekkfhceggsvyallagekkeelirlivayqtisdYLdnlcdrstsldekdfrqLhqalldaltpeaelsdYYkyreeqdDggYLaaLvetCqe 125 +sl + hc+g+sv++ + + ++ + i+ +i+ lc ++++++++ + +h+ +++a+t++ +l + ++++++ + Y ++Lv++C T236685_1 1261 HSLVHAYNHCTGSSVCTHMYNPRTGKYIHTPWCTHAIT-VQGHLCAHKHTYTPRTGKYIHTRCTHAITVQGHLCAHTHIHPQKR-QVYAHSLVQACAG 1356 57888889******************999887777665.4689*******************************9988888765.79*********75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 5388.55 // Query: T236685_2 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 5175.84 // Query: T236685_3 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.70 # Mc/sec: 5615.40 // Query: T337163_1 [L=5872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.12u 0.52s 00:00:03.64 Elapsed: 00:00:01.00 # Mc/sec: 16798.79 // Query: T337163_2 [L=5872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.44s 00:00:02.26 Elapsed: 00:00:00.79 # Mc/sec: 21264.30 // Query: T337163_3 [L=5871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.44s 00:00:02.30 Elapsed: 00:00:00.93 # Mc/sec: 18060.14 // Query: T035019_1 [L=484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0078 16.8 0.1 13 6.4 0.0 3.7 5 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.011 1.8e+02 15 34 .. 212 231 .. 212 237 .. 0.86 2 ? 0.6 0.0 0.053 8.6e+02 14 34 .. 228 248 .. 225 254 .. 0.84 3 ? 1.7 0.0 0.023 3.8e+02 13 34 .. 261 282 .. 255 288 .. 0.84 4 ? -0.3 0.0 0.1 1.6e+03 13 32 .. 278 297 .. 270 301 .. 0.85 5 ! 6.4 0.0 0.0008 13 11 35 .. 329 353 .. 327 354 .. 0.87 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.011 TPR_16 15 dAaaaleaalkrdpssPdaa 34 +Aa++l+++ +++ssP+ + T035019_1 212 AAAPVLRRLQSSGGSSPQGV 231 69***************976 PP == domain 2 score: 0.6 bits; conditional E-value: 0.053 TPR_16 14 ddAaaaleaalkrdpssPdaa 34 ++ +++l+++ +++ssP+ a T035019_1 228 PQGVPVLRRLQSSGGSSPQGA 248 67889*************987 PP == domain 3 score: 1.7 bits; conditional E-value: 0.023 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++ a++l+++ +++ssP+ + T035019_1 261 SPQGAPVLRRLQSSGGSSPQGV 282 67899**************976 PP == domain 4 score: -0.3 bits; conditional E-value: 0.1 TPR_16 13 yddAaaaleaalkrdpssPd 32 ++ +++l+++ +++ssP+ T035019_1 278 SPQGVPVLRRLQSSGGSSPQ 297 6788999***********98 PP == domain 5 score: 6.4 bits; conditional E-value: 0.0008 TPR_16 11 gdyddAaaaleaalkrdpssPdaad 35 g ++ a++l+++l +++ssP+aa T035019_1 329 GSSPQGAPVLRRLLSSGGSSPQAAP 353 556899****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.68 # Mc/sec: 2036.24 // Query: T035019_2 [L=483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 14.1 0.4 22 5.7 0.0 3.1 3 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.0 0.0014 22 11 39 .. 219 247 .. 210 249 .. 0.87 2 ? 4.6 0.0 0.0029 48 12 34 .. 254 276 .. 251 281 .. 0.86 3 ? -2.8 0.0 0.6 9.8e+03 13 23 .. 319 329 .. 316 337 .. 0.77 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0014 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAlll 39 g ++Aa++l+ + +++ssP+aa l + T035019_2 219 GSSPQAAPVLRGFQSSGGSSPQAAPVLRG 247 45789*****************9977766 PP == domain 2 score: 4.6 bits; conditional E-value: 0.0029 TPR_16 12 dyddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ a T035019_2 254 SSPQAAPVLRELQSSGGSSPQGA 276 5689****************987 PP == domain 3 score: -2.8 bits; conditional E-value: 0.6 TPR_16 13 yddAaaaleaa 23 ++Aa++l+aa T035019_2 319 SPQAAPVLRAA 329 56788888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 2607.13 // Query: T035019_3 [L=483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0069 16.9 2.1 4.2 8.0 0.1 3.7 4 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.1 0.00025 4.2 11 37 .. 213 239 .. 211 242 .. 0.85 2 ! 5.3 0.0 0.0018 29 13 34 .. 232 253 .. 230 259 .. 0.85 3 ! 5.1 0.3 0.0022 35 14 39 .. 267 292 .. 257 318 .. 0.83 4 ? -2.0 0.0 0.34 5.6e+03 11 28 .. 334 351 .. 327 355 .. 0.68 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00025 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAl 37 g ++Aa++l+++ +++ssP+aa l T035019_3 213 GSSPQAAPVLRRLQSSGGSSPQAAPVL 239 5678******************98665 PP == domain 2 score: 5.3 bits; conditional E-value: 0.0018 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ + T035019_3 232 SPQAAPVLRRLQSSGGSSPQGV 253 689****************976 PP == domain 3 score: 5.1 bits; conditional E-value: 0.0022 TPR_16 14 ddAaaaleaalkrdpssPdaadAlll 39 ++Aa++l+ + +++ssP+aa l T035019_3 267 PQAAPVLRGLQSSGGSSPQAAPVLRR 292 79*****************9976665 PP == domain 4 score: -2.0 bits; conditional E-value: 0.34 TPR_16 11 gdyddAaaaleaalkrdp 28 g ++Aa++l+ + +++ T035019_3 334 GSSPQAAPVLRGFQSSGG 351 456788888887777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.63 # Mc/sec: 2193.30 // Query: T097219_1 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.0 56.5 2.5 7.3 56.5 1.1 1 Nop53 Nop53 (60S ribosomal biogenesis) 9.3 4.7 25.1 15 4.1 25.1 1.2 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Nop53 Nop53 (60S ribosomal biogenesis) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 56.5 0.0003 2.5 200 302 .. 1239 1346 .. 1233 1376 .. 0.63 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0003 Nop53 200 kaveaEkkrekeeeklerqlekiaekaataeareeelseeddeeeeeeeeeeeeeeeeeee.......knvkkkpkrKTkaqRnkekrrkeeekeeke 290 k+ ++E+k+e+++e+ +r++++ +++++ ++++e+e e+++ +ee + +e+e++e+e++ k++++k+krK k+qR+k++r+++++k++ke T097219_1 1239 KERKKERKKERKRERRKRERKEGRKERKRKKKKEKERKERKE--KEERKVKEKERKEREGKggrergrKRKRRKKKRKRKKQRKKRERERKRKKKKKE 1334 555666666666666666666665555555555554444444..333334444444444446688888777888899999999999888888777777 PP Nop53 291 ekkekkkekqle 302 ++k+kk+ek+ e T097219_1 1335 KEKKKKREKERE 1346 777776666533 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 25.1 0.0018 15 229 315 .. 1245 1342 .. 1231 1369 .. 0.31 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0018 Presenilin 229 aekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse................seeeeeeesaeaeseaeesseekeeeessesseeeee 309 ++k+++++++++e++e ++e++++++ke+e++e++++++++ +e + +++++++++ +++++++e+e++++++++e+e T097219_1 1245 RKKERKRERRKRERKEGRKERKRKKKKEKERKERKEKEERKVKEkerkeregkggrergrK-----RKRRKKKRKRKKQRKKRERERKRKKKKKEKE 1336 2222222222222222222222222222222222222222222222233445554333221.....1111111111111111111111111111111 PP Presenilin 310 eeeeee 315 +++++e T097219_1 1337 KKKKRE 1342 111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1957 (0.120017); expected 326.1 (0.02) Passed bias filter: 561 (0.0344045); expected 326.1 (0.02) Passed Vit filter: 356 (0.0218325); expected 16.3 (0.001) Passed Fwd filter: 76 (0.00466086); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.84u 0.48s 00:00:03.32 Elapsed: 00:00:00.98 # Mc/sec: 5453.09 // Query: T097219_2 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1470 (0.0901509); expected 326.1 (0.02) Passed bias filter: 373 (0.022875); expected 326.1 (0.02) Passed Vit filter: 196 (0.0120201); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.44s 00:00:02.27 Elapsed: 00:00:00.78 # Mc/sec: 6851.32 // Query: T097219_3 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 17.4 15.5 0.0023 16.6 15.5 1.3 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 15.5 1.4e-07 0.0023 215 316 .. 1231 1337 .. 1227 1391 .. 0.41 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1.4e-07 Presenilin 215 iYsaevvvlaaeeeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse...........seeeeeeesaeaeseaeesseekeeees 300 i++++ ++e+++e+++++k++e+++ +k+ ++++e+++e+++++e +++++s+++ + e++++++++e+++++e+k+ee++ T097219_3 1231 IFDSTFLERKKERKKEREKERKKKERKKGRKEGKKEKEKERERKKRKERKRRKESKRKreegkgregrkR----ERKKEKEKKEKKKKKETKKEERK 1323 5666666665555443333222222222222222222222222222222222222222344544432211....11111111111111111111111 PP Presenilin 301 sesseeeeeeeeeeee 316 +++++ e++e+e++e T097219_3 1324 RKKEK--EKKERERKE 1337 11111..111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1982 (0.12155); expected 326.1 (0.02) Passed bias filter: 678 (0.0415798); expected 326.1 (0.02) Passed Vit filter: 415 (0.0254508); expected 16.3 (0.001) Passed Fwd filter: 99 (0.00607138); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.19u 0.59s 00:00:03.78 Elapsed: 00:00:01.01 # Mc/sec: 5288.29 // Query: T141809_1 [L=949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.73 # Mc/sec: 3719.08 // Query: T141809_2 [L=948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.70 # Mc/sec: 3874.38 // Query: T141809_3 [L=948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-25 87.6 6.7 6.5e-25 86.9 6.7 1.3 1 TMEM238 TMEM238 protein family ------ inclusion threshold ------ 1 9.3 5.7 1.7 8.6 5.7 1.2 1 Phage_holin_3_6 Putative Actinobacterial Holin-X, holin supe Domain annotation for each model (and alignments): >> TMEM238 TMEM238 protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.9 6.7 8e-29 6.5e-25 1 64 [] 480 543 .. 480 543 .. 0.99 Alignments for each domain: == domain 1 score: 86.9 bits; conditional E-value: 8e-29 TMEM238 1 grCkvalalavvfdvvGlvlLlvGifaeldfgDlLvYtGaliiflSLlwwvlWYtgnievslee 64 grC+++l+la+++d+vGlvlLl+Gi+a+l+ +D+++YtGali++lSLl+w++WY++nievs+e+ T141809_3 480 GRCALFLILALLLDAVGLVLLLLGILAPLSSWDFFIYTGALILALSLLLWIIWYSLNIEVSPEK 543 8************************************************************996 PP >> Phage_holin_3_6 Putative Actinobacterial Holin-X, holin superfamily III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 5.7 0.00021 1.7 34 88 .. 480 532 .. 478 543 .. 0.76 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00021 Phage_holin_3_6 34 gsgagllgaalvlallalllllvalalalaalwlaalivaavllvlagvlalvgl 88 g+ a++l++al+l +++l+lll+++++ l + + ++i +++l+++ +l+++ + T141809_3 480 GRCALFLILALLLDAVGLVLLLLGILAPL--SSWDFFIYTGALILALSLLLWIIW 532 56789999*****************9999..888888865555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 4172.41 // Query: T280754_1 [L=6406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.40s 00:00:02.37 Elapsed: 00:00:00.85 # Mc/sec: 21560.56 // Query: T280754_2 [L=6406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.41s 00:00:02.28 Elapsed: 00:00:00.81 # Mc/sec: 22625.28 // Query: T280754_3 [L=6406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:00.91 # Mc/sec: 20138.99 // Query: T103054_1 [L=3662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.74 # Mc/sec: 14157.24 // Query: T103054_2 [L=3662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.76 # Mc/sec: 13784.68 // Query: T103054_3 [L=3661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.34s 00:00:01.65 Elapsed: 00:00:00.70 # Mc/sec: 14962.14 // Query: T083617_1 [L=395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 1883.38 // Query: T083617_2 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 1847.81 // Query: T083617_3 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 1818.01 // Query: T251552_1 [L=4366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.45s 00:00:02.01 Elapsed: 00:00:00.87 # Mc/sec: 14356.76 // Query: T251552_2 [L=4366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.79 # Mc/sec: 15810.61 // Query: T251552_3 [L=4365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.86 # Mc/sec: 14520.38 // Query: T278718_1 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 634 (0.0388814); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 4475.44 // Query: T278718_2 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 757 (0.0464246); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.41s 00:00:01.69 Elapsed: 00:00:00.79 # Mc/sec: 4135.53 // Query: T278718_3 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:00.75 # Mc/sec: 4356.09 // Query: T345418_1 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.75 # Mc/sec: 3036.29 // Query: T345418_2 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 3503.42 // Query: T345418_3 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 4140.40 // Query: T155843_1 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.3 7.2 13.7 23 5.5 2.3 4.2 2 RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat Domain annotation for each model (and alignments): >> RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 3.8 0.0039 63 5 13 .. 897 905 .. 891 905 .. 0.92 2 ? 5.5 2.3 0.0014 23 5 13 .. 970 978 .. 967 978 .. 0.92 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0039 RNA_pol_Rpb1_R 5 PaYSPtSPt 13 P++SPtSP+ T155843_1 897 PWHSPTSPS 905 9*******6 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0014 RNA_pol_Rpb1_R 5 PaYSPtSPt 13 P++SPtSP+ T155843_1 970 PWHSPTSPS 978 9*******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.59 # Mc/sec: 12282.17 // Query: T155843_2 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.61 # Mc/sec: 11879.48 // Query: T155843_3 [L=2532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.60 # Mc/sec: 12072.70 // Query: T090995_1 [L=1566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 997 (0.0611431); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.43s 00:00:01.74 Elapsed: 00:00:00.71 # Mc/sec: 6309.94 // Query: T090995_2 [L=1566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1327 (0.0813811); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.41s 00:00:01.82 Elapsed: 00:00:00.68 # Mc/sec: 6588.32 // Query: T090995_3 [L=1566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.47s 00:00:01.92 Elapsed: 00:00:00.73 # Mc/sec: 6137.07 // Query: T294828_1 [L=1535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-07 30.2 0.0 7.2e-07 29.4 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 0.0 4.4e-11 7.2e-07 5 57 .. 288 342 .. 285 353 .. 0.84 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 4.4e-11 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.T CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.a 57 +Y+DGs++ n +ge++ag+ v+ + + +pl++ +++++aEL+A++ aL+ T294828_1 288 ELYVDGSSFINpQGERCAGCaVVTLD-DVIEDKPLPHGTSAQKAELIALTRALElR 342 68*********99999****777766.3466699*******************944 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 7571.33 // Query: T294828_2 [L=1534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 7566.40 // Query: T294828_3 [L=1534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 7438.16 // Query: T318967_1 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-42 144.0 2.3 6.5e-42 143.4 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.4 2.3 4e-46 6.5e-42 4 222 .] 334 581 .. 330 581 .. 0.93 Alignments for each domain: == domain 1 score: 143.4 bits; conditional E-value: 4e-46 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 k+ +++Rp+sl+++d k+l+k++a++++++++k ++++q+ pg + + ++ ++ +++++ + k+++++++D +kaF++++l++ l++l+++ +++ T318967_1 334 KK-ENFRPVSLMNMDAKILSKILANQIQQHFKKRIHHSQVSCIPGMQGWFNIhksiNVNHHINRTNDKNHMIISIDAEKAFNKIQLHFMLKTLNKVDIDE 432 33.79************************************************9977777777888899******************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHH CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleavee 189 + +++i++++ ++++++ +ng++ e + k+g +qG++lSPll n++++ l r +r++ ++++l++ aDD++++ +++ + +ll+ + T318967_1 433 TYLKIIRAVYDKPTANIILNGQNLEAFSLKTGARQGCPLSPLLVNIVLEALARAIRQEEeikgiqigrEEIKLSLAADDMIVYLENPIIsAPNLLKLKNN 532 **********************99*********************************99***************************55559999*9999* PP HHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 190 wlkesglkinpeKtklvlf..............sg..kseevkyLGvtl 222 + k sg+kin +K++++l+ + ++ +kyLG++l T318967_1 533 FSKVSGYKINVQKSQAFLYtnnrqtesqims*lPFtiATKGIKYLGIQL 581 *****************99998888776655551168*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.61 # Mc/sec: 15017.01 // Query: T318967_2 [L=3201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 952 (0.0583834); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.63 # Mc/sec: 14535.74 // Query: T318967_3 [L=3201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.64 # Mc/sec: 14308.62 // Query: T289267_1 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3213.33 // Query: T289267_2 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 3213.33 // Query: T289267_3 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 3332.34 // Query: T166225_1 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 3480.68 // Query: T166225_2 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.1 6.9 14.7 25 5.4 3.5 5.1 5 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 0.13 2.2e+03 12 41 .. 83 112 .. 78 122 .. 0.71 2 ? 0.5 0.1 0.049 8e+02 22 50 .. 173 201 .. 165 209 .. 0.87 3 ? 1.4 1.0 0.027 4.4e+02 26 49 .. 242 265 .. 218 280 .. 0.54 4 ? 1.0 0.3 0.035 5.7e+02 25 49 .. 267 291 .. 244 297 .. 0.61 5 ? 5.4 3.5 0.0015 25 26 69 .. 307 352 .. 284 359 .. 0.83 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.13 FAM27 12 rLttglmtqaetkkeaeqkrqaamreialw 41 L+++ + et++e ++ ++ +e +l+ T166225_2 83 WLPSSCPRKPETRREPRSRQSRRGNESPLG 112 567777778889999887777777777766 PP == domain 2 score: 0.5 bits; conditional E-value: 0.049 FAM27 22 etkkeaeqkrqaamreialwatGtirPkt 50 et +a qk + + re+ ++G++rP++ T166225_2 173 ETGPDALQKGKLRPREPDALQKGKLRPRE 201 67778998889999*************97 PP == domain 3 score: 1.4 bits; conditional E-value: 0.027 FAM27 26 eaeqkrqaamreialwatGtirPk 49 ea qk + + re+ ++G++rP+ T166225_2 242 EALQKGKLRPREPDALQKGKLRPR 265 344444444444444444444444 PP == domain 4 score: 1.0 bits; conditional E-value: 0.035 FAM27 25 keaeqkrqaamreialwatGtirPk 49 ea qk + + re+ ++G++rP+ T166225_2 267 PEALQKGKLRPREPDALQKGKLRPR 291 3555555556666666666666666 PP == domain 5 score: 5.4 bits; conditional E-value: 0.0015 FAM27 26 eaeqkrqaamreialwatGtirPktht..htgthtqtdRereRnrq 69 +a qk + + re+ ++G++rP + + +h +t+R reR+ q T166225_2 307 DALQKGKLRPREPDALQKGKLRPTKAA*gQLSAHGRTHRSRERDPQ 352 67778888999************99856589************977 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.55 # Mc/sec: 3417.39 // Query: T166225_3 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3546.35 // Query: T212562_1 [L=1576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 7773.57 // Query: T212562_2 [L=1576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 8051.19 // Query: T212562_3 [L=1576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 8349.39 // Query: T337176_1 [L=6752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1923 (0.117932); expected 326.1 (0.02) Passed bias filter: 417 (0.0255734); expected 326.1 (0.02) Passed Vit filter: 335 (0.0205446); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.09u 0.49s 00:00:05.58 Elapsed: 00:00:01.02 # Mc/sec: 18937.57 // Query: T337176_2 [L=6752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1541 (0.0945051); expected 326.1 (0.02) Passed bias filter: 486 (0.029805); expected 326.1 (0.02) Passed Vit filter: 417 (0.0255734); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.82u 0.53s 00:00:05.35 Elapsed: 00:00:00.98 # Mc/sec: 19710.53 // Query: T337176_3 [L=6751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1497 (0.0918067); expected 326.1 (0.02) Passed bias filter: 305 (0.0187048); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.57u 0.50s 00:00:04.07 Elapsed: 00:00:00.83 # Mc/sec: 23269.23 // Query: T381588_1 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 8611.58 // Query: T381588_2 [L=1775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 8908.73 // Query: T381588_3 [L=1775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 8755.13 // Query: T253053_1 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-08 33.2 0.3 2.6e-08 33.2 0.3 1.8 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.2 0.3 1.6e-12 2.6e-08 1 19 [] 252 270 .. 252 270 .. 0.98 2 ? -3.7 0.2 0.61 9.9e+03 12 16 .. 416 420 .. 415 420 .. 0.87 Alignments for each domain: == domain 1 score: 33.2 bits; conditional E-value: 1.6e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+II+S+ sQ T253053_1 252 SFAGTWMKLETIIPSKLSQ 270 7*****************9 PP == domain 2 score: -3.7 bits; conditional E-value: 0.61 DUF1725 12 IILSE 16 II+S+ T253053_1 416 IIPSN 420 ****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 600 (0.0367963); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 4612.54 // Query: T253053_2 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 531 (0.0325647); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4474.85 // Query: T253053_3 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.75 # Mc/sec: 3997.53 // Query: T198022_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 4362.77 // Query: T198022_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 3961.82 // Query: T198022_3 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 4431.86 // Query: T194081_1 [L=4036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.62 # Mc/sec: 18623.08 // Query: T194081_2 [L=4036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 20256.68 // Query: T194081_3 [L=4035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-75 246.9 71.7 1.6e-08 34.5 0.5 12.0 12 zf-H2C2_2 Zinc-finger double domain 5.5e-55 180.7 68.6 1.5e-06 28.2 2.1 11.3 10 zf-C2H2 Zinc finger, C2H2 type 2.4e-24 83.8 66.4 0.0028 18.2 1.2 11.6 10 zf-C2H2_4 C2H2-type zinc finger 1e-12 47.5 60.1 0.0038 17.0 1.5 11.0 10 zf-C2H2_6 C2H2-type zinc finger 5.7e-07 29.4 48.3 0.045 13.8 2.7 6.9 8 Zn-ribbon_8 Zinc ribbon domain 1.5e-05 24.7 41.8 1.2 9.0 0.2 10.6 10 XPA_N XPA protein N-terminal ------ inclusion threshold ------ 0.28 10.9 42.4 0.61 9.8 0.7 9.2 9 zf-C2H2_11 zinc-finger C2H2-type 0.45 11.2 41.7 0.32 11.6 3.6 5.6 5 zinc_ribbon_15 zinc-ribbon family Domain annotation for each model (and alignments): >> zf-H2C2_2 Zinc-finger double domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.6 0.6 0.00013 0.27 4 26 .] 609 631 .. 607 631 .. 0.80 2 ! 31.1 0.2 9.2e-11 1.9e-07 2 25 .. 635 658 .. 634 659 .. 0.92 3 ! 29.8 3.9 2.3e-10 4.8e-07 1 26 [] 662 687 .. 662 687 .. 0.95 4 ! 29.0 0.2 4.1e-10 8.4e-07 1 25 [. 690 714 .. 690 715 .. 0.94 5 ! 33.3 0.3 1.8e-11 3.7e-08 2 25 .. 719 742 .. 718 743 .. 0.94 6 ! 26.4 0.2 2.9e-09 5.9e-06 2 25 .. 747 770 .. 747 771 .. 0.95 7 ! 31.0 0.1 1e-10 2e-07 2 25 .. 775 798 .. 774 799 .. 0.92 8 ! 32.2 0.3 4.2e-11 8.5e-08 1 25 [. 802 826 .. 802 827 .. 0.96 9 ! 34.5 0.5 7.8e-12 1.6e-08 1 25 [. 830 854 .. 830 855 .. 0.94 10 ! 33.5 2.4 1.6e-11 3.2e-08 1 25 [. 858 882 .. 858 883 .. 0.95 11 ? -0.4 0.1 0.83 1.7e+03 1 13 [. 886 898 .. 886 903 .. 0.83 12 ? -3.4 0.7 7.7 1.6e+04 5 11 .. 915 921 .. 914 921 .. 0.90 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00013 zf-H2C2_2 4 rHlrkHtgekpyeCplCdkaFkt 26 rH r g+kp++C +C kaF++ T194081_3 609 RHERICAGKKPWKCNECEKAFSY 631 45555559*************85 PP == domain 2 score: 31.1 bits; conditional E-value: 9.2e-11 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 ++ H r HtgekpyeC +C+kaF+ T194081_3 635 FVLHQRIHTGEKPYECNECGKAFS 658 677********************8 PP == domain 3 score: 29.8 bits; conditional E-value: 2.3e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +L+ H r HtgekpyeC +C+kaF++ T194081_3 662 HLTLHQRIHTGEKPYECHECGKAFSH 687 6899********************97 PP == domain 4 score: 29.0 bits; conditional E-value: 4.1e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L rH HtgekpyeC +C+kaF+ T194081_3 690 ALIRHHIIHTGEKPYECNECGKAFN 714 588*********************7 PP == domain 5 score: 33.3 bits; conditional E-value: 1.8e-11 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L++H r HtgekpyeC +C+kaF+ T194081_3 719 LTQHQRIHTGEKPYECNECGKAFS 742 89*********************8 PP == domain 6 score: 26.4 bits; conditional E-value: 2.9e-09 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L++H Htgekpy+C +C+kaF+ T194081_3 747 LTQHQVIHTGEKPYKCNECGKAFS 770 789********************6 PP == domain 7 score: 31.0 bits; conditional E-value: 1e-10 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L +H r+Htge+pyeC +C+kaF T194081_3 775 LIQHQRTHTGERPYECNECGKAFG 798 678********************7 PP == domain 8 score: 32.2 bits; conditional E-value: 4.2e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H r+Htgekpy+C C+kaF+ T194081_3 802 ALTQHQRTHTGEKPYKCNDCAKAFS 826 699*********************6 PP == domain 9 score: 34.5 bits; conditional E-value: 7.8e-12 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L rH r+Htgekpy+C+ C+kaF+ T194081_3 830 ALIRHQRTHTGEKPYKCKDCGKAFS 854 688*********************8 PP == domain 10 score: 33.5 bits; conditional E-value: 1.6e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H ++Htgekpy+C++C+kaF+ T194081_3 858 SLTKHQKTHTGEKPYKCKECGKAFS 882 599*********************8 PP == domain 11 score: -0.4 bits; conditional E-value: 0.83 zf-H2C2_2 1 nLrrHlrkHtgek 13 +L++H ++H g k T194081_3 886 SLSQHQKTHAGVK 898 599******9876 PP == domain 12 score: -3.4 bits; conditional E-value: 7.7 zf-H2C2_2 5 HlrkHtg 11 H r Htg T194081_3 915 HKRIHTG 921 ******8 PP >> zf-C2H2 Zinc finger, C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.3 1.1e-05 0.022 2 23 .] 621 642 .. 620 642 .. 0.97 2 ! 22.3 0.7 5.3e-08 0.00011 1 23 [] 648 670 .. 648 670 .. 0.98 3 ! 20.4 3.0 2.3e-07 0.00046 1 23 [] 676 698 .. 676 698 .. 0.97 4 ! 24.6 0.5 1e-08 2.1e-05 1 23 [] 704 726 .. 704 726 .. 0.98 5 ! 17.6 0.3 1.7e-06 0.0035 1 23 [] 732 754 .. 732 754 .. 0.96 6 ! 25.7 0.4 4.5e-09 9.1e-06 1 23 [] 760 782 .. 760 782 .. 0.99 7 ! 20.8 1.2 1.7e-07 0.00034 1 23 [] 788 810 .. 788 810 .. 0.99 8 ! 24.4 0.6 1.2e-08 2.4e-05 1 23 [] 816 838 .. 816 838 .. 0.99 9 ! 28.2 2.1 7.3e-10 1.5e-06 1 23 [] 844 866 .. 844 866 .. 0.99 10 ! 24.5 1.5 1.1e-08 2.2e-05 1 23 [] 872 894 .. 872 894 .. 0.99 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.1e-05 zf-C2H2 2 kCpdCgksFkrksnLkrHirtH 23 kC++C k F+ s ++ H+r+H T194081_3 621 KCNECEKAFSYYSAFVLHQRIH 642 8********************9 PP == domain 2 score: 22.3 bits; conditional E-value: 5.3e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ +L+ H+r+H T194081_3 648 YECNECGKAFSQSIHLTLHQRIH 670 99********************9 PP == domain 3 score: 20.4 bits; conditional E-value: 2.3e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++s L rH +H T194081_3 676 YECHECGKAFSHRSALIRHHIIH 698 99*****************9998 PP == domain 4 score: 24.6 bits; conditional E-value: 1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++s L++H+r+H T194081_3 704 YECNECGKAFNQSSYLTQHQRIH 726 99********************9 PP == domain 5 score: 17.6 bits; conditional E-value: 1.7e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ L++H+ +H T194081_3 732 YECNECGKAFSQSTFLTQHQVIH 754 99*****************9888 PP == domain 6 score: 25.7 bits; conditional E-value: 4.5e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC++Cgk F+++s L +H+rtH T194081_3 760 YKCNECGKAFSDRSGLIQHQRTH 782 9*********************9 PP == domain 7 score: 20.8 bits; conditional E-value: 1.7e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F s L++H+rtH T194081_3 788 YECNECGKAFGYCSALTQHQRTH 810 99********************9 PP == domain 8 score: 24.4 bits; conditional E-value: 1.2e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC+dC k F+++s L rH+rtH T194081_3 816 YKCNDCAKAFSDRSALIRHQRTH 838 9*********************9 PP == domain 9 score: 28.2 bits; conditional E-value: 7.3e-10 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC+dCgk F+++s+L++H++tH T194081_3 844 YKCKDCGKAFSQSSSLTKHQKTH 866 9*********************9 PP == domain 10 score: 24.5 bits; conditional E-value: 1.1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC++Cgk F+++s+L +H++tH T194081_3 872 YKCKECGKAFSQSSSLSQHQKTH 894 9*********************9 PP >> zf-C2H2_4 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.6 0.006 12 2 23 .. 621 642 .. 620 643 .. 0.91 2 ! 7.5 0.6 0.0039 7.9 1 23 [. 648 670 .. 648 671 .. 0.92 3 ! 10.0 2.3 0.00061 1.2 1 23 [. 676 698 .. 676 699 .. 0.87 4 ! 11.3 0.4 0.00023 0.47 1 23 [. 704 726 .. 704 727 .. 0.92 5 ! 9.4 0.4 0.00092 1.9 1 23 [. 732 754 .. 732 755 .. 0.86 6 ! 17.3 0.3 2.7e-06 0.0055 1 23 [. 760 782 .. 760 783 .. 0.97 7 ! 13.0 1.1 6.7e-05 0.14 1 23 [. 788 810 .. 788 811 .. 0.96 8 ! 15.3 0.4 1.2e-05 0.024 1 23 [. 816 838 .. 816 839 .. 0.97 9 ! 16.7 1.6 4.3e-06 0.0087 1 23 [. 844 866 .. 844 867 .. 0.97 10 ! 18.2 1.2 1.4e-06 0.0028 1 23 [. 872 894 .. 872 895 .. 0.97 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.006 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 kC C k Fs ++a+ H + h T194081_3 621 KCNECEKAFSYYSAFVLHQRIH 642 8********99999999*9988 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0039 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs + +L H + h T194081_3 648 YECNECGKAFSQSIHLTLHQRIH 670 89********9999999999988 PP == domain 3 score: 10.0 bits; conditional E-value: 0.00061 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cgk Fs ++aL rH h T194081_3 676 YECHECGKAFSHRSALIRHHIIH 698 89********9999998887666 PP == domain 4 score: 11.3 bits; conditional E-value: 0.00023 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F+ ++ L +H + h T194081_3 704 YECNECGKAFNQSSYLTQHQRIH 726 89********888889****998 PP == domain 5 score: 9.4 bits; conditional E-value: 0.00092 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs ++ L +H h T194081_3 732 YECNECGKAFSQSTFLTQHQVIH 754 89********77777899*8877 PP == domain 6 score: 17.3 bits; conditional E-value: 2.7e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC Cgk Fs++++L +H +th T194081_3 760 YKCNECGKAFSDRSGLIQHQRTH 782 89********************9 PP == domain 7 score: 13.0 bits; conditional E-value: 6.7e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F ++aL +H +th T194081_3 788 YECNECGKAFGYCSALTQHQRTH 810 89********************9 PP == domain 8 score: 15.3 bits; conditional E-value: 1.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC C k Fs+++aL rH +th T194081_3 816 YKCNDCAKAFSDRSALIRHQRTH 838 89********************9 PP == domain 9 score: 16.7 bits; conditional E-value: 4.3e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC+ Cgk Fs +++L +H kth T194081_3 844 YKCKDCGKAFSQSSSLTKHQKTH 866 89********************9 PP == domain 10 score: 18.2 bits; conditional E-value: 1.4e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC+ Cgk Fs +++L++H kth T194081_3 872 YKCKECGKAFSQSSSLSQHQKTH 894 89********************9 PP >> zf-C2H2_6 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.5 0.3 0.0074 15 3 16 .. 621 634 .. 620 640 .. 0.91 2 ! 7.1 0.3 0.0023 4.8 2 12 .. 648 658 .. 647 659 .. 0.91 3 ! 7.8 0.9 0.0014 2.9 2 18 .. 676 692 .. 675 698 .. 0.79 4 ! 7.2 0.2 0.0022 4.4 2 12 .. 704 714 .. 703 716 .. 0.92 5 ! 7.1 0.3 0.0023 4.8 2 12 .. 732 742 .. 731 743 .. 0.91 6 ! 9.1 0.3 0.00057 1.2 2 24 .. 760 782 .. 759 785 .. 0.88 7 ! 17.0 1.5 1.8e-06 0.0038 2 24 .. 788 810 .. 787 813 .. 0.93 8 ? 4.0 0.1 0.023 47 2 24 .. 816 838 .. 815 841 .. 0.92 9 ! 9.9 2.0 0.00031 0.63 2 24 .. 844 866 .. 843 869 .. 0.93 10 ! 9.6 1.7 0.0004 0.82 2 24 .. 872 894 .. 871 897 .. 0.91 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0074 zf-C2H2_6 3 eCdeCsksFpSlqa 16 +C+eC k F+++ a T194081_3 621 KCNECEKAFSYYSA 634 7**********965 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0023 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194081_3 648 YECNECGKAFS 658 9********96 PP == domain 3 score: 7.8 bits; conditional E-value: 0.0014 zf-C2H2_6 2 heCdeCsksFpSlqaLg 18 +eC+eC+k F+ aL+ T194081_3 676 YECHECGKAFSHRSALI 692 9*********8655555 PP == domain 4 score: 7.2 bits; conditional E-value: 0.0022 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194081_3 704 YECNECGKAFN 714 9********96 PP == domain 5 score: 7.1 bits; conditional E-value: 0.0023 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194081_3 732 YECNECGKAFS 742 9********96 PP == domain 6 score: 9.1 bits; conditional E-value: 0.00057 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+k F+ L+ H ++H T194081_3 760 YKCNECGKAFSDRSGLIQHQRTH 782 9*********9999999999988 PP == domain 7 score: 17.0 bits; conditional E-value: 1.8e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+eC+k F + aL+ H ++H T194081_3 788 YECNECGKAFGYCSALTQHQRTH 810 9********************** PP == domain 8 score: 4.0 bits; conditional E-value: 0.023 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C k F+ aL+ H ++H T194081_3 816 YKCNDCAKAFSDRSALIRHQRTH 838 9*********************9 PP == domain 9 score: 9.9 bits; conditional E-value: 0.00031 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C+k F+ +L++H k+H T194081_3 844 YKCKDCGKAFSQSSSLTKHQKTH 866 9********************** PP == domain 10 score: 9.6 bits; conditional E-value: 0.0004 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+k F+ +L H k+H T194081_3 872 YKCKECGKAFSQSSSLSQHQKTH 894 9**********999999999999 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 2.0 0.0014 2.9 7 36 .. 621 657 .. 620 661 .. 0.86 2 ! 10.9 4.8 0.00017 0.34 6 35 .. 648 684 .. 647 690 .. 0.90 3 ? 4.8 0.7 0.014 28 6 18 .. 676 688 .. 674 697 .. 0.85 4 ! 13.8 2.7 2.2e-05 0.045 6 35 .. 704 740 .. 702 745 .. 0.92 5 ! 10.2 3.6 0.00029 0.59 6 34 .. 760 795 .. 759 798 .. 0.90 6 ! 10.1 2.6 0.0003 0.61 6 35 .. 816 852 .. 815 856 .. 0.89 7 ! 13.5 4.1 2.7e-05 0.054 6 35 .. 844 880 .. 842 884 .. 0.91 8 ! 7.0 0.4 0.0029 5.8 6 23 .. 872 889 .. 871 894 .. 0.79 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0014 Zn-ribbon_8 7 rCeaCghefe......vlqsisdaplta.CPeCgsev 36 +C++C + f q+i+ +++ C eCg++ T194081_3 621 KCNECEKAFSyysafvLHQRIHTGEKPYeCNECGKAF 657 7**************87788888889999****9865 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00017 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f q+i+ +++ C eCg++ T194081_3 648 YECNECGKAFSqsihltLHQRIHTGEKPYeCHECGKA 684 9***************99999998889999*****84 PP == domain 3 score: 4.8 bits; conditional E-value: 0.014 Zn-ribbon_8 6 YrCeaCghefevl 18 Y+C++Cg+ f ++ T194081_3 676 YECHECGKAFSHR 688 9*********865 PP == domain 4 score: 13.8 bits; conditional E-value: 2.2e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f+ + q+i+ +++ C eCg++ T194081_3 704 YECNECGKAFNqssyltQHQRIHTGEKPYeCNECGKA 740 9****************99****8889999*****85 PP == domain 5 score: 10.2 bits; conditional E-value: 0.00029 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++Cg+ f + q+ + + + C eCg+ T194081_3 760 YKCNECGKAFSdrsgliQHQRTHTGERPYeCNECGK 795 9**************998888888888899****97 PP == domain 6 score: 10.1 bits; conditional E-value: 0.0003 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++C + f + q+ + +++ C++Cg++ T194081_3 816 YKCNDCAKAFSdrsaliRHQRTHTGEKPYkCKDCGKA 852 9*************9988888888888999****985 PP == domain 7 score: 13.5 bits; conditional E-value: 2.7e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f + q+ + +++ C+eCg++ T194081_3 844 YKCKDCGKAFSqsssltKHQKTHTGEKPYkCKECGKA 880 9**********9999999999998889999*****85 PP == domain 8 score: 7.0 bits; conditional E-value: 0.0029 Zn-ribbon_8 6 YrCeaCghefevlqsisd 23 Y+C++Cg+ f + s s+ T194081_3 872 YKCKECGKAFSQSSSLSQ 889 9*********97776664 PP >> XPA_N XPA protein N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.2 0.092 1.9e+02 3 11 .. 621 629 .. 619 633 .. 0.88 2 ! 6.2 0.1 0.0048 9.9 3 14 .. 649 660 .. 647 664 .. 0.88 3 ? 3.2 0.0 0.042 86 3 12 .. 677 686 .. 675 694 .. 0.86 4 ! 9.0 0.2 0.00061 1.2 3 18 .. 705 720 .. 703 723 .. 0.85 5 ! 7.6 0.1 0.0017 3.5 3 18 .. 733 748 .. 731 752 .. 0.85 6 ? 5.0 0.1 0.012 24 3 13 .. 761 771 .. 759 776 .. 0.92 7 ? 2.1 0.9 0.09 1.8e+02 3 11 .. 789 797 .. 787 800 .. 0.89 8 ? 1.8 0.0 0.11 2.3e+02 3 13 .. 817 827 .. 815 834 .. 0.88 9 ? 4.7 0.4 0.014 28 3 14 .. 845 856 .. 843 861 .. 0.90 10 ! 6.2 0.5 0.0046 9.4 3 14 .. 873 884 .. 871 889 .. 0.91 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.092 XPA_N 3 kCeeCgkef 11 kC eC+k+f T194081_3 621 KCNECEKAF 629 8*******9 PP == domain 2 score: 6.2 bits; conditional E-value: 0.0048 XPA_N 3 kCeeCgkefldS 14 +C eCgk+f +S T194081_3 649 ECNECGKAFSQS 660 8********999 PP == domain 3 score: 3.2 bits; conditional E-value: 0.042 XPA_N 3 kCeeCgkefl 12 +C eCgk+f T194081_3 677 ECHECGKAFS 686 7*******95 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00061 XPA_N 3 kCeeCgkefldSyLld 18 +C eCgk+f +S +l+ T194081_3 705 ECNECGKAFNQSSYLT 720 8********9998776 PP == domain 5 score: 7.6 bits; conditional E-value: 0.0017 XPA_N 3 kCeeCgkefldSyLld 18 +C eCgk+f +S l+ T194081_3 733 ECNECGKAFSQSTFLT 748 8**********97665 PP == domain 6 score: 5.0 bits; conditional E-value: 0.012 XPA_N 3 kCeeCgkefld 13 kC eCgk+f d T194081_3 761 KCNECGKAFSD 771 8********98 PP == domain 7 score: 2.1 bits; conditional E-value: 0.09 XPA_N 3 kCeeCgkef 11 +C eCgk+f T194081_3 789 ECNECGKAF 797 8*******9 PP == domain 8 score: 1.8 bits; conditional E-value: 0.11 XPA_N 3 kCeeCgkefld 13 kC +C k+f d T194081_3 817 KCNDCAKAFSD 827 8********98 PP == domain 9 score: 4.7 bits; conditional E-value: 0.014 XPA_N 3 kCeeCgkefldS 14 kC++Cgk+f +S T194081_3 845 KCKDCGKAFSQS 856 8********998 PP == domain 10 score: 6.2 bits; conditional E-value: 0.0046 XPA_N 3 kCeeCgkefldS 14 kC+eCgk+f +S T194081_3 873 KCKECGKAFSQS 884 8********998 PP >> zf-C2H2_11 zinc-finger C2H2-type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.3 0.017 36 6 26 .. 649 669 .. 646 670 .. 0.91 2 ? 5.9 1.6 0.0049 9.9 6 26 .. 677 697 .. 674 698 .. 0.91 3 ? 0.4 0.1 0.25 5.2e+02 6 26 .. 705 725 .. 703 726 .. 0.88 4 ? 3.2 0.1 0.033 68 6 26 .. 733 753 .. 730 754 .. 0.89 5 ? 1.8 0.1 0.094 1.9e+02 5 20 .. 760 775 .. 757 780 .. 0.78 6 ? -2.5 0.9 2 4e+03 7 23 .. 790 806 .. 788 808 .. 0.75 7 ? 0.9 0.0 0.17 3.5e+02 5 24 .. 816 835 .. 813 837 .. 0.91 8 ? 8.6 0.3 0.00068 1.4 5 23 .. 844 862 .. 841 864 .. 0.93 9 ? 9.8 0.7 0.0003 0.61 5 23 .. 872 890 .. 869 892 .. 0.93 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.017 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ ++ L H +I T194081_3 649 ECNECGKAFSQSIHLTLHQRI 669 5**************999988 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0049 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ +L RH +I T194081_3 677 ECHECGKAFSHRSALIRHHII 697 5*****************877 PP == domain 3 score: 0.4 bits; conditional E-value: 0.25 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f + L H +I T194081_3 705 ECNECGKAFNQSSYLTQHQRI 725 5********999999999887 PP == domain 4 score: 3.2 bits; conditional E-value: 0.033 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ + L H I T194081_3 733 ECNECGKAFSQSTFLTQHQVI 753 5************99999766 PP == domain 5 score: 1.8 bits; conditional E-value: 0.094 zf-C2H2_11 5 cqCleCGlcftSqlsL 20 ++C eCG f+ L T194081_3 760 YKCNECGKAFSDRSGL 775 69*******9966555 PP == domain 6 score: -2.5 bits; conditional E-value: 2 zf-C2H2_11 7 CleCGlcftSqlsLsRH 23 C eCG f +L H T194081_3 790 CNECGKAFGYCSALTQH 806 *****999766666666 PP == domain 7 score: 0.9 bits; conditional E-value: 0.17 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHl 24 ++C +C f+ +L RH T194081_3 816 YKCNDCAKAFSDRSALIRHQ 835 69*****************5 PP == domain 8 score: 8.6 bits; conditional E-value: 0.00068 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 ++C +CG f+ + sL +H T194081_3 844 YKCKDCGKAFSQSSSLTKH 862 69***************** PP == domain 9 score: 9.8 bits; conditional E-value: 0.0003 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 ++C eCG f+ + sLs H T194081_3 872 YKCKECGKAFSQSSSLSQH 890 69***************** PP >> zinc_ribbon_15 zinc-ribbon family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 3.7 0.0041 8.3 18 77 .. 626 687 .. 612 694 .. 0.73 2 ? 7.7 2.2 0.0027 5.4 34 78 .. 700 744 .. 690 750 .. 0.84 3 ? 3.4 5.9 0.057 1.2e+02 35 74 .. 757 796 .. 744 830 .. 0.79 4 ? 8.8 1.6 0.0012 2.4 34 78 .. 812 856 .. 804 859 .. 0.87 5 ? 11.6 3.6 0.00016 0.32 32 78 .. 838 884 .. 830 890 .. 0.87 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0041 zinc_ribbon_15 18 kkvlklf..fipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 +k+++ + f+ ++++ ++ + c++C++ +++s +l+ + + ++ ++ +eC++Cgk+ ++ T194081_3 626 EKAFSYYsaFVLHQRIHTGEKPYECNECGKAFSQSIHLTLHQRIHTGEKPYECHECGKAFSH 687 33333332255566788888889***********9988877777788889*******98776 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0027 zinc_ribbon_15 34 kkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ + c++C++ +++s+ l+++ + ++ ++ +eC++Cgk+ +++ T194081_3 700 GEKPYECNECGKAFNQSSYLTQHQRIHTGEKPYECNECGKAFSQS 744 455679***********98888888888899********988765 PP == domain 3 score: 3.4 bits; conditional E-value: 0.057 zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkessekkeCknCgke 74 ++ ++c++C++ +++++ l ++ ++++ ++ +eC++Cgk+ T194081_3 757 EKPYKCNECGKAFSDRSGLIQHQRTHTGERPYECNECGKA 796 4556899999999999888888888888888999999875 PP == domain 4 score: 8.8 bits; conditional E-value: 0.0012 zinc_ribbon_15 34 kkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ ++c++C + +++++ l ++ ++++ ++ ++Ck+Cgk+ +++ T194081_3 812 GEKPYKCNDCAKAFSDRSALIRHQRTHTGEKPYKCKDCGKAFSQS 856 556679************9999999999999********998876 PP == domain 5 score: 11.6 bits; conditional E-value: 0.00016 zinc_ribbon_15 32 kkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ ++ ++c++C++ +++s++l+k+ ++++ ++ ++Ck+Cgk+ +++ T194081_3 838 HTGEKPYKCKDCGKAFSQSSSLTKHQKTHTGEKPYKCKECGKAFSQS 884 56667789****************999999999********998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.48u 0.37s 00:00:01.85 Elapsed: 00:00:00.75 # Mc/sec: 15391.27 // Query: T071912_1 [L=2324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.74 # Mc/sec: 8984.55 // Query: T071912_2 [L=2324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 10228.57 // Query: T071912_3 [L=2323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.72 # Mc/sec: 9230.15 // Query: T227452_1 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 7963.93 // Query: T227452_2 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 10155.95 // Query: T227452_3 [L=2059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.42s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 7960.07 // Query: T032255_1 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 3526.71 // Query: T032255_2 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3588.59 // Query: T032255_3 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 3588.59 // Query: T170631_1 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 2502.01 // Query: T170631_2 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 2733.68 // Query: T170631_3 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 2455.55 // Query: T058842_1 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 2944.45 // Query: T058842_2 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.66 # Mc/sec: 2899.84 // Query: T058842_3 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-12 47.6 0.0 2.4e-12 46.7 0.0 1.5 1 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain Domain annotation for each model (and alignments): >> Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.7 0.0 1.5e-16 2.4e-12 17 74 .] 165 222 .. 149 222 .. 0.88 Alignments for each domain: == domain 1 score: 46.7 bits; conditional E-value: 1.5e-16 EETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGCHHHH.HHHHHGGEEEEEC CS Cyt-b5 17 airgkVYDvskflsehpGgesvilkyaGkDateafksvvhsekda.ekllkkylvGkla 74 +i+ kVY+vs+++++hpGg++v+++ aG+Da + f ++ h e d+ + +lk +l+G+la T058842_3 165 VINCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAM-HPELDIvQLYLKPLLIGELA 222 69************************************.7777662666888****985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3822.07 // Query: T103991_1 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 2787.00 // Query: T103991_2 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 2699.91 // Query: T103991_3 [L=603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 2974.28 // Query: T128891_1 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 2135.76 // Query: T128891_2 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 2135.76 // Query: T128891_3 [L=432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 12.9 0.1 0.12 12.1 0.1 1.3 1 PQ-loop PQ loop repeat Domain annotation for each model (and alignments): >> PQ-loop PQ loop repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 7.2e-06 0.12 26 44 .. 271 289 .. 269 299 .. 0.91 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 7.2e-06 PQ-loop 26 krkSteGlSilflllwllG 44 kS +GlS+lf++lw +G T128891_3 271 GLKSSTGLSPLFCVLWASG 289 57**************988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 1931.06 // Query: T082825_1 [L=5995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-15 54.7 0.0 1.5e-14 54.1 0.0 1.3 1 rve Integrase core domain 0.0054 16.6 3.0 0.021 14.8 3.0 2.1 1 zf-CCHC Zinc knuckle 0.0068 16.5 0.0 0.011 15.8 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.1 0.0 2.7e-18 1.5e-14 6 118 .. 1715 1823 .. 1713 1824 .. 0.93 Alignments for each domain: == domain 1 score: 54.1 bits; conditional E-value: 2.7e-18 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 + +q+D t+++ ++ +yllv++d f++++ a++ s+ +as+v+++l + + ++g +e + sD+g+ +t++ ++ +++ l++++++++p++p T082825_1 1715 SSVQIDDTEMPPIGHL--KYLLVIVDHFTHWVEAIPFSSA-TASNVVKALVENIIPRFGL-IENIDSDKGTHFTAQVIKMLAQVLDMKWEYHNPWHPS 1808 5689*******77555..**********************.9999999999888888888.9************************************ PP rve 104 dnGkvErfnrtlkde 118 + ++Er+n tlk + T082825_1 1809 SSERIERMNETLKSH 1823 ************976 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 3.0 3.8e-06 0.021 2 16 .. 808 822 .. 807 822 .. 0.95 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 3.8e-06 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 C++C ++GH++r+C T082825_1 808 RCFKCRRIGHFKREC 822 7************** PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 2e-06 0.011 94 142 .. 1541 1594 .. 1530 1595 .. 0.76 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 2e-06 TSSBHTTHHHH.HHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 94 eqkpvknkela.ellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++++++ kel+ + l++l ++++ + hv+gH+ + gN+ aD++Ak+aa T082825_1 1541 KGQDLVHKELItQVLNSLQLPEEIAILHVPGHQKSlsfeSWGNNHADQVAKQAA 1594 44567776665155566666************766699977***********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.92u 0.34s 00:00:02.25 Elapsed: 00:00:00.90 # Mc/sec: 19056.31 // Query: T082825_2 [L=5995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-07 29.8 0.0 8.2e-07 29.2 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.2 0.0 5e-11 8.2e-07 5 79 .. 1455 1530 .. 1451 1534 .. 0.85 Alignments for each domain: == domain 1 score: 29.2 bits; conditional E-value: 5e-11 EEEEEEEEECTTTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHC CS RNase_H 5 vvYtDGsclgnsgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitq 79 ++ DGs++ +g++ + ++++++ ++ s +l++ ++++ EL A+ +aLk l ++++ +iytDSkY++ +++ T082825_2 1455 HLFIDGSSQVVKGKRYNRYlTIDGDTlKEIESGRLPNNWSAQTCELFALSQALKYL-QNQEGTIYTDSKYAFGVAHT 1530 589******99**99999945588874446779999******************86.67899*********997765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.87u 0.38s 00:00:02.25 Elapsed: 00:00:00.81 # Mc/sec: 21173.67 // Query: T082825_3 [L=5995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-07 28.7 0.0 1.3e-06 27.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0021 18.1 0.7 0.0058 16.8 0.7 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.0 1.6e-10 1.3e-06 108 175 .. 629 696 .. 614 711 .. 0.89 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 1.6e-10 Gag_p30 108 yrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaq 175 r+++++g+r++ + nl+k ++ qgk+e p fl+rlke +r+y+ + edp + + + f+++ T082825_3 629 LREMIITGIRESVPQTQNLSKAFDIQQGKDEGPLEFLNRLKEQMRKYAGLNLEDPLGQGMLKFHFVMK 696 6999***************************************************9999888888876 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.7 7.1e-07 0.0058 4 39 .] 1657 1692 .. 1656 1692 .. 0.98 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 7.1e-07 zf-H2C2 4 tHlGinkltallarkyhwlgiketvseVissCkaCq 39 tH G + + + + r y gi++++++ + sC+ C+ T082825_3 1657 THWGPQAMCDTVLRVYGCTGIYTLAKQLTDSCSICK 1692 9**********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.77 # Mc/sec: 22273.60 // Query: T043504_1 [L=1087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 6616.43 // Query: T043504_2 [L=1087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.59 # Mc/sec: 5270.72 // Query: T043504_3 [L=1086] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1086 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 5178.10 // Query: T257613_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 8742.04 // Query: T257613_2 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7332.03 // Query: T257613_3 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.71 # Mc/sec: 6398.59 // Query: T058257_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 2304.27 // Query: T058257_2 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.078 13.5 0.3 0.28 11.8 0.3 1.9 1 TPR_4 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_4 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.3 1.7e-05 0.28 6 22 .. 372 388 .. 371 388 .. 0.94 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 1.7e-05 TPR_4 6 aLArallalGdldeAra 22 aLA l+++G+++eA++ T058257_2 372 ALAASLWDTGEPEEAER 388 8**************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.67 # Mc/sec: 1891.56 // Query: T058257_3 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.59 # Mc/sec: 2143.20 // Query: T338695_1 [L=2599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 10047.70 // Query: T338695_2 [L=2599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-23 81.2 0.0 1.2e-22 80.2 0.0 1.5 1 rve Integrase core domain 3.6e-09 36.8 0.0 6.3e-09 36.0 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.012 15.7 0.0 0.018 15.1 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 0.0 2.2e-26 1.2e-22 3 118 .. 942 1052 .. 940 1053 .. 0.94 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 2.2e-26 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + ++ +y++v id+ s+li ++a++ e +++ vi+ l a+ + p ++ +Dng +y+s+ f++f+ ++i++ + p+ T338695_2 942 EPNQLWQTDVTHVPEF--EKLKYVHVSIDTNSHLISTHALPGE-STQYVIKHLPLTSAFMRQ--PTKIKTDNGLAYASSLFQQFCHMWNIQHFTGIPY 1034 7*************55..556**********************.**********77777777..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 +pq +++vE + tlk++ T338695_2 1035 NPQRQAIVEHVHSTLKNR 1052 ****************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 1.2e-12 6.3e-09 3 85 .. 185 273 .. 183 314 .. 0.74 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 1.2e-12 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.........H CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.........k 85 +++++ DGs+ + +++++ag+ ++++ s++l++++t ++a L+A ++aL a ++ +vni tDSkY+++ +++ w T338695_2 185 DHTWFIDGSSTRPncHSPAKAGYaIVSS-----TSTALPHPTTSQQAKLIASTQALTlA--KGLRVNIHTDSKYAFHILHHRAIIWaerfphyvrV 273 579******9876578888****55553.....58999999***************977..99**************5554444445555555550 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 3.4e-06 0.018 3 115 .. 946 1058 .. 944 1070 .. 0.82 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 3.4e-06 DDE_Tnp_IS240 3 swrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasayasalkelkregelfdevshvq....v 92 w+ D T v +k +Y+ +D ++ ++ + t+ +++ l + ++p +i tD ayas l ++++ +++++h + T338695_2 946 LWQTDVTHVPEFEKLKYVHVSIDTNSHLISTHALPGESTQYVIKHLPLTSAFM-RQPTKIKTDNGLAYASSL---FQQFCHMWNIQHFTgipyN 1035 5999999999999*********************9999999999987776666.99************9864...5555557777777622224 PP DDE_Tnp_IS240 93 kylnnriEsdhrtlKkrlrptrg 115 + ++ ++E+ h+tlK+rl+ ++g T338695_2 1036 PQRQAIVEHVHSTLKNRLENKKG 1058 5677889**********988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.22u 0.34s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 10621.85 // Query: T338695_3 [L=2598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-07 28.6 0.4 5.6e-07 28.6 0.4 1.7 2 IN_DBD_C Integrase DNA binding domain 0.00039 20.2 0.2 0.00039 20.2 0.2 2.2 3 GP41 Retroviral envelope protein 0.00066 19.7 0.0 0.0016 18.5 0.0 1.6 1 rve Integrase core domain ------ inclusion threshold ------ 0.012 15.5 0.6 0.03 14.2 0.6 1.6 1 Borrelia_orfX Orf-X protein Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.1 1.7 6.9e+03 27 42 .. 472 487 .. 471 487 .. 0.85 2 ! 28.6 0.4 1.4e-10 5.6e-07 4 43 .. 1102 1139 .. 1100 1140 .. 0.95 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1.7 TEEEE..E-SS-EEEE CS IN_DBD_C 27 GavcvFPqdasdikwv 42 G v vFP + +++ +v T338695_3 472 GWVQVFPTESEKATVV 487 8899*****9998876 PP == domain 2 score: 28.6 bits; conditional E-value: 1.4e-10 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvP 43 v wkd++s+ +GP+ +L++grG++c s + w+P T338695_3 1102 AVLWKDVNSNVCCGPNDLLMWGRGYACA--HTPSGPLWIP 1139 699*************************..999******9 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 2.3 9.5e+03 135 180 .. 540 589 .. 537 606 .. 0.49 2 ? -1.7 0.9 0.48 1.9e+03 145 191 .. 690 726 .. 677 732 .. 0.75 3 ! 20.2 0.2 9.6e-08 0.00039 1 76 [. 1596 1671 .. 1596 1675 .. 0.87 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 2.3 .HHHHHGCHHHHHHHHHHHH...HHHHHHCHHHHHHHHHHH.XXXXX... CS GP41 135 qslannfkslnWvsyikltv...liiavgvalrvvlivlll.lPvlfksl 180 +sl ++++ l+W s l +++ + ++l+ lll +P l++sl T338695_3 540 RSLLKWIEDLHWQSSPILQKvysNTFTLMNSYSLLLYSLLLsFPFLYHSL 589 47888999999987532221000222222333344444433146666665 PP == domain 2 score: -1.7 bits; conditional E-value: 0.48 HHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX... CS GP41 145 nWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraev 191 +W+s ++ + + + + +lll P++f +l+ ++ q + + T338695_3 690 DWIS-------LVLSILSPSIPVFLLLLGPCVF-CLVCQFIQSH--I 726 4544.......788888888999999999****.9999888877..3 PP == domain 3 score: 20.2 bits; conditional E-value: 9.6e-08 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHH..HHE..CCSHHHCX CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlk..lrChanykliCvT 76 va +s++ +vq+at+v++l knv + l Q+ id k a + l+ + +G+ +l ++++ ++k iCvT T338695_3 1596 VAVASITESVQTATFVDNLAKNVSNQLLLQQGIDEKTLACLRTLDAASEYVGEWQDALAFRQQ*nWDW--EHKHICVT 1671 5789****************************************999999999999999888543555..67777776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 3.9e-07 0.0016 4 92 .. 443 527 .. 440 527 .. 0.82 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 3.9e-07 rve 4 pgelwqvDvtvgr.ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgi 92 p + wq+ +t+++ + + +yllv++ +f++++ ++++ +e +a +vi l + ++g p + sDn +++++ ++++ + lgi T338695_3 443 PAQDWQINFTHMP*VRKL---KYLLVWVGTFTGWVQVFPTESE-KATVVISSLLSDIIPQFGL-PTSIQSDNRLAFINQVTQAVSQALGI 527 677788888877666544...5*********************.7777777777777777777.***************99999998887 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.6 7.4e-06 0.03 56 80 .. 943 967 .. 939 991 .. 0.89 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 7.4e-06 Borrelia_orfX 56 litsgkqmlltflnldvlnmfmfll 80 li gkqml t lnl+ lnm+m+ l T338695_3 943 LISYGKQMLHTSLNLKNLNMYMYPL 967 899*******************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.71 # Mc/sec: 10468.22 // Query: T036617_1 [L=1277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.73 # Mc/sec: 5004.49 // Query: T036617_2 [L=1277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.5 8.1 6.5 2.6 7.3 6.5 1.3 1 CAP_N Adenylate cyclase associated (CAP) N terminal Domain annotation for each model (and alignments): >> CAP_N Adenylate cyclase associated (CAP) N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 6.5 0.00016 2.6 220 261 .. 1012 1056 .. 1007 1074 .. 0.50 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00016 ---TTSBE.......SSC--XXXXXXX........XXXXXXXX... CS CAP_N 220 tWnkkGkdaeealkaaaaaasaaaagg.ppp...PpPpPppasvfe 261 +W+++ +++++ k++++++ + a + pp PpPpPpp+++f T036617_2 1012 AWETERESVSKKRKKKKKKQ-SLAFPCpHPPhrcPPPPPPPPAPFI 1056 68777666666655333332.2222331233566555555555552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 5372.47 // Query: T036617_3 [L=1277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 5798.86 // Query: T112510_1 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 9372.42 // Query: T112510_2 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.66 # Mc/sec: 9514.43 // Query: T112510_3 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-08 34.3 0.0 3.5e-08 33.5 0.0 1.3 1 rve Integrase core domain 4.6e-08 32.7 0.0 8e-08 31.9 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.0 4.3e-12 3.5e-08 17 117 .. 551 644 .. 545 646 .. 0.82 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 4.3e-12 rve 17 ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 +p+++g+ ++l+ id++ r++ +++ t+++++e+ + p + sD+g+ +t+k++ +++ +gi++s++ p++p+ G++E n++ k T112510_3 551 LPSWKGQRFVLTEIDTYCRYACN-----ASAKTTICGVMECLIHCHSI--PYSIASDQGTPFTAKEVWQWAHAHGIHLSYHVPHHPEAAGLIEEWNGLSK 643 45666667777777777665543.....33456699999988888888..9*********************************************9987 PP rve 117 d 117 T112510_3 644 S 644 6 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.0 9.8e-12 8e-08 8 110 .. 715 817 .. 709 836 .. 0.89 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 9.8e-12 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECG CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilta 107 + + s+g+++ + ++++ get+++p++ ++ p g+ + +lp+S a+kg++v++g+id y+ +++ l n +k++ ++gd + +L+ ++ + T112510_3 715 PMTLHSVGLEVLIPVGIMLPSGETTTIPLNWKLRFPPGHFGPLLPSSPQAKKGVTVLTGLIDLNYQDAISLLLHNGGKEEYVWNTGDPLGHLLTLPCPVI 814 566678999999999******************************************************************************9999776 PP EEE CS dUTPase 108 ele 110 +++ T112510_3 815 KVN 817 655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.64 # Mc/sec: 9811.75 // Query: T074394_1 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-13 47.8 13.7 1.7e-08 33.7 0.8 2.9 3 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.7 0.56 9.1e+03 5 8 .. 525 528 .. 525 528 .. 0.90 2 ! 33.7 0.8 1e-12 1.7e-08 1 19 [] 1192 1210 .. 1192 1210 .. 0.98 3 ! 23.4 0.5 1.9e-09 3e-05 1 14 [. 1300 1313 .. 1300 1314 .] 0.96 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 0.56 DUF1725 5 KWME 8 +WM+ T074394_1 525 TWMD 528 9**7 PP == domain 2 score: 33.7 bits; conditional E-value: 1e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T074394_1 1192 SFAGTWMKLETIILSKLSQ 1210 7*****************9 PP == domain 3 score: 23.4 bits; conditional E-value: 1.9e-09 DUF1725 1 kFagKWMELEnIIL 14 +F+g+WM+LE+IIL T074394_1 1300 SFVGTWMKLETIIL 1313 7************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 5695.65 // Query: T074394_2 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.069 12.7 0.0 0.1 12.2 0.0 1.2 1 Terpene_synth Terpene synthase, N-terminal domain Domain annotation for each model (and alignments): >> Terpene_synth Terpene synthase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 6.2e-06 0.1 138 174 .. 503 538 .. 494 545 .. 0.80 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 6.2e-06 HHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTT- CS Terpene_synth 138 gllsLYeAshlstegeeiLeealsftrkhLkeslsee 174 + +sLY As++ + g+++L e + +t ++L +++s++ T074394_2 503 QSISLYYASQFLFYGDYTLSETHGWTYAML-QYSSHT 538 5689**************************.644433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 5966.87 // Query: T074394_3 [L=1313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 439 (0.0269226); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 5691.32 // Query: T316465_1 [L=3809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.72 # Mc/sec: 15134.59 // Query: T316465_2 [L=3809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.70 # Mc/sec: 15567.00 // Query: T316465_3 [L=3809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.33s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 13970.39 // Query: T222209_1 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 531 (0.0325647); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.50 # Mc/sec: 12089.87 // Query: T222209_2 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11189.02 // Query: T222209_3 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.55 # Mc/sec: 10985.59 // Query: T138068_1 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 4071.18 // Query: T138068_2 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3994.37 // Query: T138068_3 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4234.03 // Query: T322050_1 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-46 155.9 253.2 2.5e-18 65.9 10.8 21.1 20 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.5 0.42 6.9e+03 7 16 .. 128 136 .. 118 154 .. 0.63 2 ? -2.3 0.2 0.3 4.8e+03 16 46 .. 433 463 .. 425 465 .. 0.82 3 ! 21.4 0.9 1.2e-08 0.00019 27 48 .. 860 881 .. 848 881 .. 0.94 4 ! 4.5 3.1 0.0023 38 2 39 .. 889 926 .. 889 930 .. 0.86 5 ! 37.3 19.1 1.3e-13 2.1e-09 1 50 [] 941 999 .. 941 999 .. 0.96 6 ! 10.8 3.3 2.4e-05 0.39 29 49 .. 999 1019 .. 998 1021 .. 0.90 7 ! 6.0 0.9 0.00078 13 24 38 .. 1028 1042 .. 1024 1048 .. 0.86 8 ? -9.9 28.8 1 1.6e+04 1 39 [. 1063 1124 .. 1038 1125 .. 0.75 9 ! 4.1 12.8 0.003 50 7 39 .. 1125 1167 .. 1123 1176 .. 0.87 10 ! 6.3 1.6 0.00064 10 1 18 [. 1161 1177 .. 1161 1193 .. 0.75 11 ! 16.3 2.3 4.6e-07 0.0075 1 26 [. 1194 1218 .. 1194 1220 .. 0.95 12 ! 17.4 5.8 2.1e-07 0.0035 1 30 [. 1227 1266 .. 1227 1268 .. 0.93 13 ! 14.3 10.8 1.9e-06 0.032 18 50 .] 1321 1353 .. 1306 1353 .. 0.87 14 ! 23.1 5.9 3.6e-09 5.8e-05 17 50 .] 1353 1386 .. 1352 1386 .. 0.96 15 ! 65.9 10.8 1.6e-22 2.5e-18 1 50 [] 1391 1440 .. 1391 1440 .. 0.99 16 ! 12.0 1.2 1.1e-05 0.17 25 44 .. 1436 1455 .. 1436 1456 .. 0.95 17 ! 16.2 7.3 5e-07 0.0082 20 49 .. 1463 1492 .. 1461 1494 .. 0.90 18 ? 0.1 1.7 0.052 8.5e+02 19 46 .. 1503 1534 .. 1501 1536 .. 0.87 19 ? 0.9 3.3 0.03 4.9e+02 4 29 .. 1555 1579 .. 1553 1579 .. 0.88 20 ! 18.5 6.9 1e-07 0.0016 2 35 .. 1578 1610 .. 1577 1617 .. 0.92 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.42 DUF4705 7 srrpLqapas 16 ++r+L+ p T322050_1 128 GQRRLH-PEN 136 577777.554 PP == domain 2 score: -2.3 bits; conditional E-value: 0.3 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322050_1 433 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 463 5677788888888889999898888999888 PP == domain 3 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322050_1 860 SYLPAASPGPELSPVGLHRPSS 881 67******************98 PP == domain 4 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322050_1 889 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 926 67788999888.899********************9854 PP == domain 5 score: 37.3 bits; conditional E-value: 1.3e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322050_1 941 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 999 9*****************99997888999****************************98 PP == domain 6 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 29 LpvAsaGpklppagLsrPssC 49 L +As+G k p ++LsrPss+ T322050_1 999 LSAASPGAKVPRVSLSRPSSS 1019 789***************975 PP == domain 7 score: 6.0 bits; conditional E-value: 0.00078 DUF4705 24 rpsaqLpvAsaGpkl 38 +ps++L +A++Gp + T322050_1 1028 QPSSCLWAAFPGPAF 1042 8************76 PP == domain 8 score: -9.9 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322050_1 1063 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1124 56666666666669999999999889888888887777777777775447899999999987 PP == domain 9 score: 4.1 bits; conditional E-value: 0.003 DUF4705 7 srrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322050_1 1125 FRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1167 69*************8888776549**************9854 PP == domain 10 score: 6.3 bits; conditional E-value: 0.00064 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322050_1 1161 PGPTPASQQPLW-TQCLP 1177 9**********9.77766 PP == domain 11 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322050_1 1194 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1218 9***********.9***********7 PP == domain 12 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLp 30 P+pA+asrrpLqa pas+q s l + s+++ T322050_1 1227 PRPAWASRRPLQAqvvlksaspgPASQQVSKLFWLSSCPA 1266 99**************************999999999985 PP == domain 13 score: 14.3 bits; conditional E-value: 1.9e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322050_1 1321 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1353 899***************************987 PP == domain 14 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322050_1 1353 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1386 899*****************************87 PP == domain 15 score: 65.9 bits; conditional E-value: 1.6e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322050_1 1391 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1440 9***********************************************98 PP == domain 16 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322050_1 1436 PSSSLPAASAGLSRPQVGLE 1455 99****************96 PP == domain 17 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322050_1 1463 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1492 67888**********************975 PP == domain 18 score: 0.1 bits; conditional E-value: 0.052 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322050_1 1503 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1534 67888999999999***99999999******9 PP == domain 19 score: 0.9 bits; conditional E-value: 0.03 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322050_1 1555 RPASSR-LTAPSPVQSSCLSATSAGP 1579 599999.*99999*******999976 PP == domain 20 score: 18.5 bits; conditional E-value: 1e-07 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322050_1 1578 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1610 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.24s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 9738.04 // Query: T322050_2 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-08 33.0 213.5 0.0031 17.6 6.0 20.4 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 1.0 0.00018 3 4 24 .. 859 879 .. 858 887 .. 0.88 2 ? -0.4 2.7 0.079 1.3e+03 1 25 [. 909 932 .. 909 932 .. 0.75 3 ? -1.1 0.2 0.13 2.1e+03 41 49 .. 948 956 .. 942 957 .. 0.85 4 ? -1.7 1.1 0.19 3.2e+03 7 15 .. 957 964 .. 951 970 .. 0.76 5 ! 14.7 1.3 1.5e-06 0.025 1 14 [. 972 984 .. 972 991 .. 0.90 6 ! 2.8 18.8 0.0077 1.3e+02 1 50 [] 993 1058 .. 993 1058 .. 0.88 7 ? -8.5 19.0 1 1.6e+04 3 31 .. 1029 1104 .. 1027 1107 .. 0.62 8 ? 2.4 10.0 0.011 1.7e+02 6 49 .. 1113 1155 .. 1110 1156 .. 0.91 9 ? -5.2 23.4 1 1.6e+04 13 42 .. 1162 1223 .. 1135 1242 .. 0.66 10 ? 2.0 1.1 0.013 2.2e+02 21 35 .. 1258 1272 .. 1245 1279 .. 0.84 11 ! 5.7 7.8 0.00099 16 16 43 .. 1329 1357 .. 1309 1364 .. 0.74 12 ! 17.6 6.0 1.9e-07 0.0031 1 26 [. 1380 1404 .. 1380 1406 .. 0.96 13 ! 12.1 0.5 9.7e-06 0.16 2 15 .. 1414 1426 .. 1414 1433 .. 0.82 14 ! 14.7 0.7 1.4e-06 0.024 1 13 [. 1434 1446 .. 1434 1464 .. 0.87 15 ! 6.6 12.2 0.00049 8 1 46 [. 1466 1512 .. 1466 1514 .. 0.79 16 ! 2.6 0.7 0.0086 1.4e+02 29 50 .] 1516 1538 .. 1516 1538 .. 0.86 17 ! 16.5 16.9 4.2e-07 0.0068 2 39 .. 1544 1603 .. 1543 1610 .. 0.90 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322050_2 859 APTSRQPLQAQNFLQSASTDQ 879 9********999999987655 PP == domain 2 score: -0.4 bits; conditional E-value: 0.079 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322050_2 909 TGTAPSLQWPL*tQ---LLPPSLLSRP 932 799*******9744...6676666665 PP == domain 3 score: -1.1 bits; conditional E-value: 0.13 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322050_2 948 GSLSRPSSS 956 689999997 PP == domain 4 score: -1.7 bits; conditional E-value: 0.19 DUF4705 7 srrpLqapa 15 srrpLq ++ T322050_2 957 SRRPLQ-AQ 964 89****.65 PP == domain 5 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322050_2 972 PGPAPASRRPLQ-A 984 9***********.5 PP == domain 6 score: 2.8 bits; conditional E-value: 0.0077 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322050_2 993 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 1058 9***********999**********97777666666778889************9999...88899998 PP == domain 7 score: -8.5 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322050_2 1029 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1104 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 8 score: 2.4 bits; conditional E-value: 0.011 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322050_2 1113 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1155 59*****.************9...679999998899*********97 PP == domain 9 score: -5.2 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322050_2 1162 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1223 36666666666666666666666666666665567779********************5543 PP == domain 10 score: 2.0 bits; conditional E-value: 0.013 DUF4705 21 glsrpsaqLpvAsaG 35 ++ ++aqLp A+a T322050_2 1258 FFGLAPAQLPTAFAA 1272 599**********85 PP == domain 11 score: 5.7 bits; conditional E-value: 0.00099 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322050_2 1329 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1357 3356889***************9887776 PP == domain 12 score: 17.6 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322050_2 1380 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1404 9***********.***********96 PP == domain 13 score: 12.1 bits; conditional E-value: 9.7e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322050_2 1414 GPAWASRQPLQA-Q 1426 9**********4.4 PP == domain 14 score: 14.7 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322050_2 1434 PGPAPASRRPLQA 1446 9***********7 PP == domain 15 score: 6.6 bits; conditional E-value: 0.00049 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322050_2 1466 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1512 9***********999*****99888765.4566666544777778777 PP == domain 16 score: 2.6 bits; conditional E-value: 0.0086 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322050_2 1516 LLVASSGPELdLQSAFAGPASCL 1538 789*******8677888999998 PP == domain 17 score: 16.5 bits; conditional E-value: 4.2e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322050_2 1544 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1603 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 9738.04 // Query: T322050_3 [L=1735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-28 98.4 218.0 2e-14 53.4 12.6 19.6 16 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.2 0.13 2.1e+03 38 47 .. 860 869 .. 859 873 .. 0.76 2 ? 0.4 0.0 0.042 6.8e+02 7 34 .. 872 898 .. 870 900 .. 0.88 3 ! 31.1 5.2 1.1e-11 1.9e-07 3 49 .. 900 945 .. 898 946 .. 0.96 4 ! 12.5 6.6 7.5e-06 0.12 24 47 .. 941 964 .. 941 968 .. 0.94 5 ? -1.4 4.1 0.16 2.5e+03 34 49 .. 972 987 .. 965 1008 .. 0.85 6 ? -14.2 23.7 1 1.6e+04 8 31 .. 1010 1070 .. 988 1091 .. 0.57 7 ? 1.5 7.4 0.019 3.1e+02 5 46 .. 1075 1108 .. 1072 1112 .. 0.54 8 ! 33.6 11.5 1.8e-12 3e-08 2 50 .] 1097 1145 .. 1096 1145 .. 0.89 9 ! 8.8 4.8 0.00011 1.7 29 50 .] 1145 1166 .. 1143 1166 .. 0.93 10 ! 18.3 2.4 1.1e-07 0.0019 17 50 .] 1166 1199 .. 1166 1199 .. 0.95 11 ! 53.4 12.6 1.2e-18 2e-14 1 50 [] 1204 1251 .. 1204 1251 .. 0.99 12 ? 1.4 9.0 0.021 3.4e+02 2 27 .. 1315 1340 .. 1314 1365 .. 0.70 13 ! 6.1 18.1 0.0007 11 13 46 .. 1378 1425 .. 1341 1428 .. 0.67 14 ? -1.5 10.9 0.17 2.8e+03 9 27 .. 1431 1448 .. 1430 1481 .. 0.69 15 ? -2.1 2.5 0.27 4.4e+03 7 22 .. 1482 1496 .. 1480 1509 .. 0.59 16 ! 16.9 15.9 3e-07 0.0049 1 39 [. 1510 1592 .. 1510 1607 .. 0.96 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322050_3 860 LPPGSLSRPR 869 5788888884 PP == domain 2 score: 0.4 bits; conditional E-value: 0.042 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322050_3 872 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 898 568889.99***********99999877 PP == domain 3 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322050_3 900 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 945 689*******.************************************ PP == domain 4 score: 12.5 bits; conditional E-value: 7.5e-06 DUF4705 24 rpsaqLpvAsaGpklppagLsrPs 47 rps++ +As+Gp lpp+gL rP+ T322050_3 941 RPSSCFLAASPGPALPPGGLCRPR 964 7**********************6 PP == domain 5 score: -1.4 bits; conditional E-value: 0.16 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322050_3 972 QGQLLPPGALCRPKSS 987 6788888888888886 PP == domain 6 score: -14.2 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322050_3 1010 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 1070 5777766666666666653333333333333333333223222111134555555555555 PP == domain 7 score: 1.5 bits; conditional E-value: 0.019 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 Pas r L a+ q+s +L +AsaGp + L+rP T322050_3 1075 PASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 1108 55555.5555555555.......5555555555544445554 PP == domain 8 score: 33.6 bits; conditional E-value: 1.8e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322050_3 1097 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1145 9******9555.7765499***************************9976 PP == domain 9 score: 8.8 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322050_3 1145 LRASSPGPALPPGCVSRPDSCL 1166 7799*****************9 PP == domain 10 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322050_3 1166 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1199 68899999************************87 PP == domain 11 score: 53.4 bits; conditional E-value: 1.2e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322050_3 1204 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1251 9*********************************************..97 PP == domain 12 score: 1.4 bits; conditional E-value: 0.021 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322050_3 1315 GRGWASsSWPLQ-THLQPPGVLSGPSS 1340 78999637****.88888888888876 PP == domain 13 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322050_3 1378 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1425 25578889********************55555555555555555555 PP == domain 14 score: -1.5 bits; conditional E-value: 0.17 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322050_3 1431 RPLQ-AQLQPPGGLCRPKS 1448 9***.99999999888865 PP == domain 15 score: -2.1 bits; conditional E-value: 0.27 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322050_3 1482 SSQPLQ-AQLLLPQWP 1496 679***.666555433 PP == domain 16 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322050_3 1510 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1592 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 9927.08 // Query: T156437_1 [L=4322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.27s 00:00:01.39 Elapsed: 00:00:00.54 # Mc/sec: 22897.24 // Query: T156437_2 [L=4322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.50 # Mc/sec: 24729.01 // Query: T156437_3 [L=4321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.55 # Mc/sec: 22475.72 // Query: T188688_1 [L=1651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.47 # Mc/sec: 10049.43 // Query: T188688_2 [L=1650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 557 (0.0341592); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 8741.42 // Query: T188688_3 [L=1650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 8281.35 // Query: T065986_1 [L=2217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-16 58.5 0.0 9e-16 57.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.085 13.0 0.0 0.82 9.9 0.0 2.2 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.9 0.0 1.1e-19 9e-16 3 155 .. 389 540 .. 387 543 .. 0.85 Alignments for each domain: == domain 1 score: 57.9 bits; conditional E-value: 1.1e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065986_1 389 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 484 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065986_1 485 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 540 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.09 7.4e+02 3 28 .. 724 749 .. 722 759 .. 0.82 2 ? 9.9 0.0 0.0001 0.82 65 98 .. 780 813 .. 766 816 .. 0.80 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.09 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065986_1 724 EEPWVTLDIMATQIQFLCDTKVNYSV 749 689*****************766665 PP == domain 2 score: 9.9 bits; conditional E-value: 0.0001 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065986_1 780 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 813 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11531.75 // Query: T065986_2 [L=2216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-17 62.7 0.0 6.5e-17 61.9 0.0 1.3 1 RNase_H RNase H 1.5e-05 25.1 0.0 2.5e-05 24.3 0.0 1.4 1 rve Integrase core domain ------ inclusion threshold ------ 0.024 14.0 0.1 0.069 12.5 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.9 0.0 1.2e-20 6.5e-17 8 135 .. 1336 1466 .. 1332 1472 .. 0.87 Alignments for each domain: == domain 1 score: 61.9 bits; conditional E-value: 1.2e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065986_2 1336 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1427 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065986_2 1428 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1466 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 4.6e-09 2.5e-05 55 116 .. 1641 1701 .. 1638 1701 .. 0.89 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 4.6e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065986_2 1641 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 1701 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.3e-05 0.069 126 221 .. 989 1076 .. 954 1077 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.3e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065986_2 989 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1075 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065986_2 1076 V 1076 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 10930.34 // Query: T065986_3 [L=2216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00026 20.5 0.0 0.00041 19.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 2.5e-08 0.00041 152 210 .. 537 595 .. 520 596 .. 0.91 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.5e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065986_3 537 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 595 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11526.54 // Query: T259114_1 [L=7118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.37s 00:00:02.09 Elapsed: 00:00:00.66 # Mc/sec: 30853.62 // Query: T259114_2 [L=7117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.37s 00:00:02.15 Elapsed: 00:00:00.69 # Mc/sec: 29508.01 // Query: T259114_3 [L=7117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.36s 00:00:02.11 Elapsed: 00:00:00.69 # Mc/sec: 29508.01 // Query: T307844_1 [L=1826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-14 51.9 0.0 1.2e-13 51.0 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.013 16.0 0.0 0.023 15.3 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.016 15.6 0.0 0.025 15.0 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.41 10.3 5.4 0.068 12.8 0.8 2.2 2 zf-C2H2_10 C2H2 zinc-finger 0.78 9.8 9.8 0.022 14.7 3.0 2.1 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.0 0.0 3.7e-17 1.2e-13 3 97 .. 254 343 .. 252 346 .. 0.92 Alignments for each domain: == domain 1 score: 51.0 bits; conditional E-value: 3.7e-17 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklg 97 ++P++++ +ggk i++l+ tGA+++v++ P + k+ + G++g ++++ ++ ++ +++ + ++l +p++p++llGrdlL+kl T307844_1 254 KEPMVRMTVGGKDIKFLVNTGAEHSVVTTPVAPLS----KKAIDIIGATGVLtKQAFCLPRTCSVGGHEVIH--QFLYIPDCPLPLLGRDLLSKLR 343 68*********************************....77777777777776999999*************..*******************997 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.0 6.9e-06 0.023 1 77 [. 258 327 .. 258 338 .. 0.72 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 6.9e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispelaeklglkvrksevtvrvsgaggevkarlvrld.slklggltlknvpalvld 77 v+ t++Gk+++fl+ TGa ++++++ +a + +k+ + ++ga g +++ + l+ + ++gg+++ +++l+++ T307844_1 258 VRMTVGGKDIKFLVNTGAEHSVVTTPVA-----PLSKK--AIDIIGATGVLTKQAFCLPrTCSVGGHEVI-HQFLYIP 327 6789*********************999.....44443..367788888877666666657888888874.4555555 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.0 0.0 7.8e-06 0.025 1 29 [. 258 286 .. 258 341 .. 0.65 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 7.8e-06 EEEEETTEEEEEEEETT-SS-EEEHHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseelae 29 v +t+ gk++kflv TGA+++++++ +a T307844_1 258 VRMTVGGKDIKFLVNTGAEHSVVTTPVAP 286 5789********************99983 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.8 2.1e-05 0.068 5 19 .. 199 213 .. 197 215 .. 0.86 2 ? -3.0 0.3 1.8 5.8e+03 4 8 .. 982 986 .. 982 986 .. 0.92 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 2.1e-05 zf-C2H2_10 5 tCSYChetGHtRAkC 19 +C YC+etGH kC T307844_1 199 QCAYCKETGHWKDKC 213 7*********87777 PP == domain 2 score: -3.0 bits; conditional E-value: 1.8 zf-C2H2_10 4 itCSY 8 i CSY T307844_1 982 IECSY 986 89**9 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 3.0 6.6e-06 0.022 2 18 .] 199 215 .. 198 215 .. 0.94 2 ? -3.2 0.6 3.1 1e+04 3 7 .. 1108 1112 .. 1107 1114 .. 0.79 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 6.6e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C +C e+GH++ Cp+ T307844_1 199 QCAYCKETGHWKDKCPQ 215 8***************7 PP == domain 2 score: -3.2 bits; conditional E-value: 3.1 TSSSS CS zf-CCHC 3 CynCG 7 Cy C T307844_1 1108 CYVCR 1112 ****6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 9328.35 // Query: T307844_2 [L=1826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-24 86.4 0.4 5.4e-11 42.3 0.0 2.2 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.0 3.3e-15 5.4e-11 1 140 [. 465 560 .. 465 563 .. 0.93 2 ! 42.1 0.2 3.7e-15 6e-11 136 209 .. 1689 1775 .. 1689 1793 .. 0.88 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 3.3e-15 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ +++ p+ + ++ +k +++ lDlk+aF+s++l+ +++kl+af+ +++ T307844_2 465 VPKPGTKDYRPV----QDLRLVNQATVT---------FHPTVPNPYTLLGL------------LPAKDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 539 69*********7....7***********.........*********99555............56899******************************98 PP .......................TEEEEESB--ST-TTHH CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 g+ +++y++++lpqG+++ P T307844_2 540 -------------------GSGVTTHYTWTRLPQGFKNFP 560 ...................7888*************9866 PP == domain 2 score: 42.1 bits; conditional E-value: 3.7e-15 -TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE...... CS RVT_1 136 svlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...s 209 ++lSPllf +m+ l r +r+ ++v+l+++aDD++++ +++++ ++ll+ + e+ k sg+k n +K+ ++l+ + T307844_2 1689 CPLSPLLFITVMEVLARAIRHGK*ikgiqiskEEVKLSLFADDMIVYLENPKDlSKKLLDLINEFSKVSGYKTNVHKSVALLYtnsD 1775 89*******************99***************************999678899999999999***********99875431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 9497.96 // Query: T307844_3 [L=1826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-06 25.6 0.0 1.1e-05 25.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.0 6.6e-10 1.1e-05 115 207 .. 535 627 .. 528 641 .. 0.88 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 6.6e-10 .........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS RVT_1 115 svrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvl 207 s+r++g+ s ++ g p Gs +SP++f ++ + l+++ r g++l +Y+D +l+ + + +a+ ++l+++g+k++++K +++ T307844_3 535 SGRIRGQVSPLITLGPGFPRGSRTSPTIFGEALARDLQKFPARDLGCVLFQYIDNLLLGRPMAVGCVKGTDALLQHLEDYGYKVSKKKAQICR 627 556666655666777799************************99***********************************************93 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9856.37 // Query: T376197_1 [L=238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1448.68 // Query: T376197_2 [L=238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-40 138.0 3.1 5.9e-40 137.6 3.1 1.1 1 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.6 3.1 3.6e-44 5.9e-40 345 443 .] 27 124 .. 11 124 .. 0.95 Alignments for each domain: == domain 1 score: 137.6 bits; conditional E-value: 3.6e-44 DUF4641 345 lpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlPRgpapSgdqeppvrpprpeeqqqppqGaqgCprcvvLqkeiddLkeqLaamqs 443 lpthrpg+p lsv++gEf+sGd+ +R pq+ g+s+p+a s gg++PR++apSgdq ppv+pprpe+qqqp GaqgCp c+ Lq+eiddL++qLaamqs T376197_2 27 LPTHRPGLPRLSVRHGEFNSGDPIIRTPQILGSSEPSACSPGGLVPRRHAPSGDQLPPVHPPRPERQQQPL-GAQGCPWCIQLQREIDDLTQQLAAMQS 124 8***************************************************************7777766.*************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 457 (0.0280265); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.63 # Mc/sec: 1080.76 // Query: T376197_3 [L=237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.55 # Mc/sec: 1232.76 // Query: T338637_1 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.4 17.1 0.024 13.9 17.1 1.1 1 DUF1510 Protein of unknown function (DUF1510) 0.21 10.2 21.4 0.29 9.7 21.4 1.1 1 NPR3 Nitrogen Permease regulator of amino acid transpo Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 17.1 3e-06 0.024 28 117 .. 790 887 .. 776 896 .] 0.36 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 3e-06 DUF1510 28 vivaaslfigsksde.......eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekek.eedaeenaevteess 117 ++v++ + + s++ +e+++++e e ++e++ ++++e + + e+e+++e + e+e++k+ e e k e+e++++ e++ + ++e ++e + T338637_1 790 IVVGYDVSVSSNETPnwtvykrRERKRERERERKREKERERERERKRKREKEKEREREREQEREKKRARERERKREQEREKErERERKREKERERERK 887 34555555555543357666552222222222222222233333333333333333333333333333332222222222221222222222222222 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 21.4 3.6e-05 0.29 30 123 .. 790 887 .. 773 895 .. 0.47 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 3.6e-05 NPR3 30 aFlGlPvhvdedg..kwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededdeeseke..eeeke 123 + +G+ v v++++ +w k++++k +r+r++++++++++e+++k+++++++e ++e+++++e+++++e e+++e+++e++++ e ++++ e+e++ T338637_1 790 IVVGYDVSVSSNEtpNWTVYKRRERKRERERERKREKERERERERKRKREKEKEREREREQEREKKRARERERKREQEREKERERERKREKerERERK 887 56888899988886667666555544444444444444444433333333333333333333333333333333333333333333222221111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1575 (0.0965902); expected 326.1 (0.02) Passed bias filter: 471 (0.0288851); expected 326.1 (0.02) Passed Vit filter: 279 (0.0171103); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.59u 0.46s 00:00:02.05 Elapsed: 00:00:00.80 # Mc/sec: 3204.13 // Query: T338637_2 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 14.0 17.6 0.036 13.4 17.6 1.1 1 DUF1510 Protein of unknown function (DUF1510) 4.4 5.8 21.3 5.9 5.4 21.3 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 17.6 4.4e-06 0.036 35 115 .. 808 888 .. 789 895 .. 0.31 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 4.4e-06 DUF1510 35 figsksdeeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevtee 115 fi++++++e +++ + e++ e+e+++e + e +++ e+eke++ +++ e++ e e e+++e + eke+e++ + ++e ++e T338637_2 808 FIKGEREREREKERERERKREKEKERERERERKRKREKEKESKRERKREQERERERESKRERKREKERERERKREKERERE 888 444443322222222222222222222222222222222222222222233333333333333333333333332222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 21.3 0.00073 5.9 234 310 .. 814 889 .. 790 896 .] 0.27 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.00073 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeee 310 ++++e+e+e+e+k+e+++e+++e+e+++ + ek+++s++++++e+e+++e es+ e+++e+++e+e+++++e+e+e+ T338637_2 814 EREREKERERERKREKEKERERERERKR-KREKEKESKRERKREQERERERESKRERKREKERERERKREKERERER 889 2222222222222111111111111111.111111111122222222222222222222222211111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1579 (0.0968355); expected 326.1 (0.02) Passed bias filter: 575 (0.0352631); expected 326.1 (0.02) Passed Vit filter: 292 (0.0179075); expected 16.3 (0.001) Passed Fwd filter: 59 (0.0036183); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.60u 0.43s 00:00:02.03 Elapsed: 00:00:00.78 # Mc/sec: 3286.29 // Query: T338637_3 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1495 (0.091684); expected 326.1 (0.02) Passed bias filter: 449 (0.0275359); expected 326.1 (0.02) Passed Vit filter: 244 (0.0149638); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.43s 00:00:01.81 Elapsed: 00:00:00.78 # Mc/sec: 3282.62 // Query: T001578_1 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 7952.21 // Query: T001578_2 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 613 (0.0375935); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 7375.97 // Query: T001578_3 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 671 (0.0411505); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 7270.60 // Query: T316903_1 [L=2322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.63 # Mc/sec: 10544.20 // Query: T316903_2 [L=2322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 8740.59 // Query: T316903_3 [L=2322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 9768.89 // Query: T372539_1 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 5131.61 // Query: T372539_2 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-19 68.3 0.1 7.1e-19 67.8 0.1 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.8 0.1 4.3e-23 7.1e-19 308 367 .. 1011 1072 .. 1006 1073 .. 0.97 Alignments for each domain: == domain 1 score: 67.8 bits; conditional E-value: 4.3e-23 TT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 k+ qPr++yPakls++++ eik f k++lrd+++trPa ++llke + er++ yq+l+++ T372539_2 1011 KNSQPRVSYPAKLSFLSEEEIKSFTVKQMLRDFVTTRPASQELLKEalNVERNNWYQPLQKH 1072 689*********************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 5213.07 // Query: T372539_3 [L=1147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-70 238.0 24.8 1.3e-69 234.7 24.8 2.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.12 12.8 12.6 0.017 15.5 8.1 1.9 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.19 10.9 6.3 0.27 10.4 6.3 1.2 1 CorA CorA-like Mg2+ transporter protein 0.32 10.9 2.9 0.6 10.0 2.9 1.4 1 DUF1664 Protein of unknown function (DUF1664) 0.72 10.0 8.0 1.8 8.7 8.0 1.6 1 ABC_tran_CTD ABC transporter C-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 234.7 24.8 4e-73 1.3e-69 2 297 .. 740 1001 .. 737 1021 .. 0.88 Alignments for each domain: == domain 1 score: 234.7 bits; conditional E-value: 4e-73 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiik. 89 Gk + +k +nsk ++ s+P ++ s a e+++++k+f+e+ + d+++ + ++lke + +++ke + k ++e + i T372539_3 740 GKNR---RKKAENSKNQNVSSPKDQN-SLAAR--EQNWMEKEFDEFTEVDFRRwviTNSSKLKEHVLTQCKEAKnLGKRLDELLTR---ITS* 823 5555...67889*******9997655.44444..9*****************966668899***********87555666653222...1123 PP ...............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 90 ekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqv 182 ek+ + ++++elk+ ++el++ s++s+i+++eer+s +ed+++ei++e rek k +qslq+ T372539_3 824 EKN------I----NDMMELKSTARELREAYT------------------SINSQINQVEERISEIEDQLNEIKQEDNIREKSEK--KQSLQE 886 333......2....378************998..................*******************************9987..69**** PP HHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EE CS Transposase_22 183 iqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvt 275 i+d+vk Pnl liGv+es+ e+++klen+l++ii+en Pnl +++n++iqei rtP r++ +ra++rhii+r+tkv+ k+k+l+a+rekGrvt T372539_3 887 IRDYVKNPNLHLIGVPESDGENGTKLENTLQDIIQENIPNLTRQINIQIQEILRTPLRHSLRRATPRHIIIRFTKVEIKEKMLRAAREKGRVT 979 ********************************************************************************************* PP ETTEEEEEEE---HHHHHHHHH CS Transposase_22 276 lkGkPirltadlsaetlkarre 297 kG Pirlta ls etl arre T372539_3 980 HKGGPIRLTAHLSVETLLARRE 1001 ********************96 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.5 8.1 5.3e-06 0.017 6 96 .. 795 892 .. 793 894 .. 0.86 2 ? -2.1 0.1 1.7 5.4e+03 43 67 .. 909 934 .. 903 974 .. 0.64 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 5.3e-06 Syntaxin-6_N 6 vkeeVqkslnkleslyrrweelledtss.s....tseeldetrteLrkalrsiewdledLeetvriveknpskfkide..kelsrrrafveevreev 95 ke V + +++++l +r+ ell+ +s + el++t +eLr+a+ si+ +++++ee ++ +e + ++ k ++ +e s++++ ++e+r+ v T372539_3 795 LKEHVLTQCKEAKNLGKRLDELLTRITS*EkninDMMELKSTARELREAYTSINSQINQVEERISEIEDQLNEIKQEDniREKSEKKQSLQEIRDYV 891 689999999**********999999877735777999******************************9977775554424799999********999 PP Syntaxin-6_N 96 k 96 k T372539_3 892 K 892 7 PP == domain 2 score: -2.1 bits; conditional E-value: 1.7 Syntaxin-6_N 43 rteLrkalrsi.ewdledLeetvriv 67 t+L+++l++i ++++ +L + ++i T372539_3 909 GTKLENTLQDIiQENIPNLTRQINIQ 934 57888888886245677888777654 PP >> CorA CorA-like Mg2+ transporter protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 6.3 8.3e-05 0.27 113 211 .. 837 934 .. 796 941 .. 0.79 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 8.3e-05 CorA 113 yrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrrala.pnrevlkrllakaddkllddedkeylrdlldelerllemleal 211 +r l+e +++ ++ ++ee++ e+ed+l++ ++++ +re ++ +++l ++r++++ pn ++ + + +d+++ ++ ++ + + +++++ +l ++++++ T372539_3 837 ARELREAYTSINSQINQVEERISEIEDQLNEIKQEDNIREKSEKKQSLQEIRDYVKnPNLHLI-GVPE-SDGENGTKLENTLQDIIQENIPNLTRQINIQ 934 5567888889999*****************************************972566666.7777.7777777666666666666666677777765 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 2.9 0.00018 0.6 30 122 .. 829 870 .. 788 896 .. 0.56 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00018 DUF1664 30 dlm..fvTrrslsdavasvskqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeiee 122 d+m T r+l++a +s+ +q++qv e +++ ++L +ei++ T372539_3 829 DMMelKSTARELREAYTSINSQINQVEERISEIEDQL-----------------------------------------------------NEIKQ 870 3331123445555555555555555555555554444.....................................................44433 PP >> ABC_tran_CTD ABC transporter C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 8.0 0.00055 1.8 4 55 .. 837 886 .. 834 889 .. 0.83 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00055 ABC_tran_CTD 4 ykeqre.leeleaeIeaLEaeiaeleaeladpelysdpeklaelsaeleelea 55 +e re + + ++I++ E++i+e+e++l++ ++++ + e s++++ l++ T372539_3 837 ARELREaYTSINSQINQVEERISEIEDQLNEI---KQEDNIREKSEKKQSLQE 886 5566665778********************66...577889999999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 5756.79 // Query: T051662_1 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.71 # Mc/sec: 5560.49 // Query: T051662_2 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 6367.65 // Query: T051662_3 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 6164.19 // Query: T354626_1 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 4610.16 // Query: T354626_2 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 5306.03 // Query: T354626_3 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 5624.39 // Query: T316425_1 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.74 # Mc/sec: 11632.75 // Query: T316425_2 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.74 # Mc/sec: 11632.75 // Query: T316425_3 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 11036.20 // Query: T221660_1 [L=2554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 13047.43 // Query: T221660_2 [L=2553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.64 # Mc/sec: 11412.03 // Query: T221660_3 [L=2553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 13042.32 // Query: T336594_1 [L=4688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-39 136.4 0.0 1.4e-39 136.0 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 4.9e-14 51.9 2.3 1.4e-13 50.4 2.3 1.9 1 Integrase_Zn Integrase Zinc binding domain 1.7e-12 47.6 0.0 2.8e-12 46.9 0.0 1.3 1 RNase_H RNase H 3e-07 30.1 0.0 4.8e-07 29.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00019 21.5 0.0 0.00035 20.6 0.0 1.3 1 rve Integrase core domain 0.00095 19.0 6.2 0.0048 16.8 6.2 2.4 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.1 12.2 2.5 0.24 11.0 2.5 1.6 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.0 0.0 5.9e-43 1.4e-39 1 205 [] 3289 3497 .. 3289 3497 .. 0.92 Alignments for each domain: == domain 1 score: 136.0 bits; conditional E-value: 5.9e-43 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqs.q 92 +k Lk++k+a++qygp+sp v+ ++++a +p d l+ a+ + ++l+ ++ w +e + ++ +a++ i+i +d+llg g + T336594_1 3289 FKLLKEFKQAINQYGPGSPLVMGQLKNVAVSNrmIPTDEDALT*AClTPAHFLQfKTSWADEASIQ-AAHNAQAQPRINIAADQLLGVGGWAGFDA*L 3385 689***********************98755445******99897757899999889999998888.555555669****************999999 PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledml 189 +mq +++e++r ++++a eki + g++ +s++ i+QGp py df+aRl+++l+k +ad +a+d++++ La++NANp+Cq++l +r+++ l d++ T336594_1 3386 VMQD-DAIEHLRGVCIRAGEKITSGGKQYPSFSAIKQGPRKPYVDFIARLQESLEKMIADSAAQDIVLQLLAFDNANPDCQAAL*P-IREKAHLVDYI 3481 9*99.****************************************************************************98554.67999****** PP Gag_p24 190 raCqgvggavhkarvl 205 +aC+g+gg hka ++ T336594_1 3482 KACDGIGGNLHKATLM 3497 *************998 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.4 2.3 5.8e-17 1.4e-13 1 37 [. 4156 4192 .. 4156 4193 .. 0.98 Alignments for each domain: == domain 1 score: 50.4 bits; conditional E-value: 5.8e-17 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+q CptCq T336594_1 4156 ARHFHNLTHVNASGLKRRCSITWKEAKAIIQRCPTCQ 4192 899*********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.9 0.0 1.2e-15 2.8e-12 4 142 .. 4028 4153 .. 4025 4154 .. 0.76 Alignments for each domain: == domain 1 score: 46.9 bits; conditional E-value: 1.2e-15 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +tDGs++ g+a + +k + ++++ +++++aEL Avie+L a d +n+++DS+Yvv+ tq ++ ++ + t+eq ++ T336594_1 4028 FHCFTDGSSN-----GKASYSGSKS----KVFQMP-YTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIESAQLRFH--TDEQ--LMTl 4108 5689****88.....8888854433....445555.67****************..8999************.8888888655333..4444..4442 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++l ++ + + ++++h++ + ++gN+maDrl +a+ T336594_1 4109 fTQLPRAV--RSRMHPFYITHIRSRTPFpgplAEGNQMADRLIANAI 4153 23555555..345899********9988888889********98875 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.4 0.0 2.1e-10 4.8e-07 2 111 .. 3949 4025 .. 3948 4045 .. 0.83 Alignments for each domain: == domain 1 score: 29.4 bits; conditional E-value: 2.1e-10 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +Kk+ g++R++ +d++a+n++++ + qpg++++ + +k++ l+ +Dlk+ F++++l+e++ + +af++p T336594_1 3949 KKKS-GKWRML----TDLRAINSVTQP---------MGALQPGLPSPTII--------------PKNWPLIVIDLKDSFFTISLAEQDCEGFAFTIP- 4017 6888.*****7....7***********.........***********555..............9********************************. PP ............ CS RVT_1 100 klinliksflst 111 ++++ T336594_1 4018 ----AVNNLQPA 4025 ....44544444 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.0 1.5e-07 0.00035 3 36 .. 4209 4240 .. 4208 4245 .. 0.90 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 1.5e-07 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrl 36 +p+++wq+Dvt+++ + g+ ay++v +d+fs++ T336594_1 4209 EPNSVWQMDVTHLP--SFGRLAYVHVCVDTFSHF 4240 69************..56777***********97 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 6.2 2.1e-06 0.0048 2 18 .] 3516 3532 .. 3515 3532 .. 0.93 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 2.1e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T336594_1 3516 ACFNCGKHGHTKKECRK 3532 7**************86 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 2.5 0.0001 0.24 31 48 .. 3514 3531 .. 3513 3532 .. 0.91 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.0001 zf-CCHC_4 31 prfCfiCgllGHsdkeCp 48 p Cf+Cg GH++keC T336594_1 3514 PGACFNCGKHGHTKKECR 3531 678**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.55u 0.37s 00:00:01.92 Elapsed: 00:00:00.74 # Mc/sec: 18123.74 // Query: T336594_2 [L=4687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-24 85.7 0.1 3.7e-24 84.8 0.1 1.5 1 RVP Retroviral aspartyl protease 1e-19 70.3 0.0 1.7e-19 69.6 0.0 1.3 1 dUTPase dUTPase 1.7e-07 30.9 1.1 3.6e-07 29.9 1.1 1.5 1 G-patch G-patch domain ------ inclusion threshold ------ 0.096 13.1 0.0 0.18 12.3 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.8 0.1 9.1e-28 3.7e-24 2 99 .. 3735 3831 .. 3734 3833 .. 0.98 Alignments for each domain: == domain 1 score: 84.8 bits; conditional E-value: 9.1e-28 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 ++rP +++ i+gk++++l+DtGAd++++s +++P wp+ ++ ++ G+g+a e++qs++ +++ + + ++g+++p+i++ +p+nl+GrdlLq++g + T336594_2 3735 DKRPTCEITIQGKKFKGLVDTGADISILSLQHWPSAWPIPPTQFNIVGVGKAPEVYQSSYVLHCEGPDGQSGTIQPIITS-VPINLWGRDLLQQWGTQ 3831 68******************************************************************************.**************987 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.6 0.0 4.3e-23 1.7e-19 4 112 .. 3604 3714 .. 3601 3726 .. 0.86 Alignments for each domain: == domain 1 score: 69.6 bits; conditional E-value: 4.3e-23 TBEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 4 eiptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + + +++++sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l+R +l++kg+ +++gvidsdy+Ge+++v+ +t+ + k k g+RiAqL+ T336594_2 3604 QCLSPATAGSAAVDLCCTKAVSLLPgEPLQKVPTGVCGPLPAGTIGLVLGRPSLSLKGVQIHTGVIDSDYNGEIQIVI--STSVPWKAKPGERIAQLL 3699 567899*******************555689*****************************************888887..68899************* PP EEEBEC...GEEEEE CS dUTPase 101 farilt...aeleev 112 + ++++ +e++++ T336594_2 3700 ILPYVKmgkSEIKQT 3714 **9999443344333 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.9 1.1 8.8e-11 3.6e-07 7 44 .. 3845 3882 .. 3840 3883 .. 0.94 Alignments for each domain: == domain 1 score: 29.9 bits; conditional E-value: 8.8e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+G Gk+ qG +eP++++++ r lG+ T336594_2 3845 HMMHEMGYVPGMGTGKNLQGLKEPLQVEKQSSRQRLGY 3882 6********************************99987 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 4.3e-05 0.18 2 25 .. 3741 3764 .. 3740 3774 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.3e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +i+s T336594_2 3741 EITIQGKKFKGLVDTGADISILSL 3764 689******************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.56u 0.38s 00:00:01.94 Elapsed: 00:00:00.71 # Mc/sec: 18885.51 // Query: T336594_3 [L=4687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-14 52.9 1.0 6e-14 51.3 1.0 1.9 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 5.6e-08 32.9 0.0 9.7e-08 32.1 0.0 1.3 1 rve Integrase core domain 9.8e-08 31.0 2.6 2e-07 30.1 2.6 1.5 1 IN_DBD_C Integrase DNA binding domain 0.0045 16.9 0.2 0.0081 16.1 0.2 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.3 1.0 1.5e-17 6e-14 5 35 .. 3551 3581 .. 3547 3582 .. 0.90 Alignments for each domain: == domain 1 score: 51.3 bits; conditional E-value: 1.5e-17 -TTT-SSBS-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 5 CpRCkkgkHwardChskfdknGnpLsanegr 35 p+CkkgkHwa++Chskfdk+Gn s+n r T336594_3 3551 GPKCKKGKHWANECHSKFDKEGNSISGNAMR 3581 59*************************9866 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.1 0.0 2.4e-11 9.7e-08 45 118 .. 4247 4317 .. 4223 4318 .. 0.80 Alignments for each domain: == domain 1 score: 32.1 bits; conditional E-value: 2.4e-11 rve 45 emdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 e + v + l + +a g p + +Dn++ y s+++++f + ++i++ + p+++q +++vEr+ lk++ T336594_3 4247 E-PSACVKCHLLQCFAVMGI--PASIKTDNAPGYPSQTLATFFSLWNIKHITGIPYNSQGQAIVERMYLSLKQQ 4317 3.333334444456777777..**********************************************999986 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 2.6 4.9e-11 2e-07 4 49 .. 4372 4416 .. 4369 4417 .. 0.92 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 4.9e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+d +++W +++++grG++cv P ++++++w+P R +++ T336594_3 4372 LVWWRDPITKRWEI-GKIITWGRGYACVSPGQNQQPIWIPSRHLKP 4416 689*********84.69*************************9996 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.2 2e-06 0.0081 23 76 .. 4452 4505 .. 4431 4509 .. 0.85 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 2e-06 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmna 76 t +++pptw q +kl+q+a l + t + +++a + +++ +a v + T336594_3 4452 NTHRTQPPTWGQNRKLSQMAEENLRKAGQPVTMNNLMIALIAVITTASADVDPD 4505 6899******************99999999999999999888888888877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.58u 0.34s 00:00:01.92 Elapsed: 00:00:00.71 # Mc/sec: 18885.51 // Query: T172461_1 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 10390.75 // Query: T172461_2 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.55 # Mc/sec: 10007.70 // Query: T172461_3 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 8094.47 // Query: T021185_1 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2108.71 // Query: T021185_2 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 23.5 0.0 6e-05 22.7 0.0 1.3 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.0 3.7e-09 6e-05 7 31 .. 179 203 .. 179 211 .. 0.94 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 3.7e-09 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkv 31 +saqWl ge+pk++pkp+lhqkk+ T021185_2 179 QSAQWLGLGEAPKHFPKPNLHQKKC 203 799*********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.54 # Mc/sec: 2421.11 // Query: T021185_3 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-23 81.4 1.6 5.3e-23 80.6 1.6 1.4 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.07 12.8 0.3 0.11 12.1 0.3 1.3 1 Pox_Ag35 Pox virus Ag35 surface protein Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.6 1.6 6.4e-27 5.3e-23 23 79 .. 191 251 .. 187 252 .. 0.87 Alignments for each domain: == domain 1 score: 80.6 bits; conditional E-value: 6.4e-27 Transposase_1 23 kpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +++++q k+vm+tVwWsa++li+y+fl+ +et+tse+Yaqq+ +++qklq+++pa vn T021185_3 191 STSQSQtctkKNVMVTVWWSAASLIHYSFLNLSETVTSEKYAQQIHEMHQKLQCLQPAFVN 251 4444444444************************************************998 PP >> Pox_Ag35 Pox virus Ag35 surface protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.3 1.4e-05 0.11 135 178 .. 36 80 .. 9 89 .. 0.87 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.4e-05 Pox_Ag35 135 IikdlkkltarvsAvs.tvLedvQAasisRqftslvkaieelkal 178 +ik+ ++lt+ + ++ +L+d+Q +s sR+f+ ++a++ + + T021185_3 36 VIKQCRQLTTSIASLAqKLLTDIQYSSGSRSFAKETRALKMRSVV 80 89***********9973599**************99999765544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.53 # Mc/sec: 2466.79 // Query: T302102_1 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1210 (0.0742058); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.42s 00:00:01.94 Elapsed: 00:00:00.75 # Mc/sec: 6286.20 // Query: T302102_2 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 961 (0.0589354); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.42s 00:00:01.88 Elapsed: 00:00:00.79 # Mc/sec: 5967.91 // Query: T302102_3 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1268 (0.0777628); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.47s 00:00:02.08 Elapsed: 00:00:00.81 # Mc/sec: 5820.55 // Query: T281912_1 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 2717.79 // Query: T281912_2 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 2851.45 // Query: T281912_3 [L=607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 2713.32 // Query: T315358_1 [L=7854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.39u 0.43s 00:00:02.82 Elapsed: 00:00:00.79 # Mc/sec: 28441.72 // Query: T315358_2 [L=7854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.46s 00:00:02.59 Elapsed: 00:00:00.85 # Mc/sec: 26434.07 // Query: T315358_3 [L=7854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.43s 00:00:02.72 Elapsed: 00:00:01.03 # Mc/sec: 21814.52 // Query: T060421_1 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2074 (0.127192); expected 326.1 (0.02) Passed bias filter: 585 (0.0358764); expected 326.1 (0.02) Passed Vit filter: 348 (0.0213418); expected 16.3 (0.001) Passed Fwd filter: 106 (0.00650067); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.43s 00:00:02.22 Elapsed: 00:00:00.73 # Mc/sec: 1700.82 // Query: T060421_2 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1685 (0.103336); expected 326.1 (0.02) Passed bias filter: 453 (0.0277812); expected 326.1 (0.02) Passed Vit filter: 200 (0.0122654); expected 16.3 (0.001) Passed Fwd filter: 56 (0.00343432); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 1905.75 // Query: T060421_3 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1926 (0.118116); expected 326.1 (0.02) Passed bias filter: 521 (0.0319514); expected 326.1 (0.02) Passed Vit filter: 280 (0.0171716); expected 16.3 (0.001) Passed Fwd filter: 61 (0.00374095); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.44s 00:00:01.87 Elapsed: 00:00:00.83 # Mc/sec: 1492.46 // Query: T221673_1 [L=595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 2790.48 // Query: T221673_2 [L=595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.69 # Mc/sec: 2466.95 // Query: T221673_3 [L=594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 2574.75 // Query: T156480_1 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:00.80 # Mc/sec: 10127.34 // Query: T156480_2 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.80 # Mc/sec: 10127.34 // Query: T156480_3 [L=2831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 11570.01 // Query: T261600_1 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.23s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 9352.71 // Query: T261600_2 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-08 32.7 0.0 8.8e-08 31.8 0.0 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 0.0 5.4e-12 8.8e-08 50 79 .. 375 404 .. 374 405 .. 0.96 Alignments for each domain: == domain 1 score: 31.8 bits; conditional E-value: 5.4e-12 Transposase_1 50 pgetitsevYaqqldklrqklqekrpalvn 79 pgetitse+Yaq +d+++qklq+++palvn T261600_2 375 PGETITSEKYAQKIDEMHQKLQCLQPALVN 404 89**************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 8684.66 // Query: T261600_3 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 47.0 0.2 4.3e-12 45.6 0.2 1.8 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 0.2 2.6e-16 4.3e-12 9 48 .. 224 263 .. 218 263 .. 0.97 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 2.6e-16 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyefl 48 aqWld++e k++pkp+lhq+kvm+tVw s+++li+y+fl T261600_3 224 AQWLDQEEVSKHFPKPNLHQEKVMITVWGSSASLIHYSFL 263 8**************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 8684.66 // Query: T316856_1 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1142 (0.0700356); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.57 # Mc/sec: 7018.90 // Query: T316856_2 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.3 6.8 8.4 21 5.1 0.1 3.7 4 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.1 0.21 3.4e+03 23 36 .. 579 592 .. 578 592 .. 0.90 2 ? 5.1 0.1 0.0013 21 15 36 .. 646 666 .. 644 666 .. 0.91 3 ? 3.4 0.2 0.0044 71 16 36 .. 693 712 .. 692 712 .. 0.90 4 ? 0.9 0.0 0.027 4.4e+02 18 36 .. 740 758 .. 737 758 .. 0.88 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.21 HTH_Mga 23 ldelakeLglselt 36 l +++++L+++++t T316856_2 579 LAHIKTQLHTTSKT 592 679********997 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0013 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++++L+++++t T316856_2 646 TQ-RPKLTLTHIKTQLHTTSKT 666 66.999**************98 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0044 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316856_2 693 Q-RPKLTLTHVKTQLHTTSKT 712 5.789**************98 PP == domain 4 score: 0.9 bits; conditional E-value: 0.027 HTH_Mga 18 eksltldelakeLglselt 36 ++ lt ++++++L+++++t T316856_2 740 RPKLTFTHIKTQLHTTSKT 758 6789999**********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1329 (0.0815037); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.63 # Mc/sec: 6461.84 // Query: T316856_3 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1433 (0.0878818); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 7137.02 // Query: T111836_1 [L=1760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.53 # Mc/sec: 9500.11 // Query: T111836_2 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 9494.72 // Query: T111836_3 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 9867.06 // Query: T288554_1 [L=659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 14.2 20.9 0.18 12.3 1.9 3.5 3 SlyX SlyX 0.69 9.3 25.4 0.033 13.6 1.3 3.1 3 PspA_IM30 PspA/IM30 family 2.1 8.6 8.8 6.5 7.0 0.2 3.1 3 HrpB7 Bacterial type III secretion protein (HrpB7) 9.3 6.3 16.8 12 5.9 9.6 2.4 2 Fib_alpha Fibrinogen alpha/beta chain family Domain annotation for each model (and alignments): >> SlyX SlyX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 1.5 6.2e-05 0.25 4 56 .. 80 132 .. 78 139 .. 0.91 2 ? 0.7 2.7 0.19 7.6e+02 29 48 .. 143 164 .. 136 187 .. 0.53 3 ? 12.3 1.9 4.3e-05 0.18 5 53 .. 230 264 .. 228 277 .. 0.58 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 6.2e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS SlyX 4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessga 56 +le LEi l e+ ++L++++ + + ++l +q+ +l+e+l++++ ++++ T288554_1 80 QLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEAS 132 799*****************************************999888765 PP == domain 2 score: 0.7 bits; conditional E-value: 0.19 HHHHHHHHHHHHHHHHHT-..X CS SlyX 29 qqqqidrlqrqlrllaerl..k 48 +q i++lq+++++ +e+l + T288554_1 143 KDQCIQKLQAEVKASQEQLiaQ 164 4455555555555555555221 PP == domain 3 score: 12.3 bits; conditional E-value: 4.3e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS SlyX 5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 ++eL ++++ q + i +L +v+ e +++i++l++ + T288554_1 230 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEA--------------E 264 4556666666666666666666666666666654..............4 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 7.0 0.0028 11 93 134 .. 88 129 .. 66 157 .. 0.91 2 ? -1.1 4.6 0.25 1e+03 88 112 .. 160 184 .. 143 199 .. 0.56 3 ? 13.6 1.3 8.1e-06 0.033 100 135 .. 230 265 .. 223 267 .. 0.93 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0028 PspA_IM30 93 ikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134 +k++e++a+al++ql+ ++ + +l +q+++le k+e++ k T288554_1 88 LKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHK 129 5889********************************998776 PP == domain 2 score: -1.1 bits; conditional E-value: 0.25 PspA_IM30 88 ealaeikslekqaealetqlaqqrs 112 ++a++ ++ek++++l+t la +++ T288554_1 160 QLIAQKLKHEKKVKKLQTDLATANA 184 3455666666666666666665554 PP == domain 3 score: 13.6 bits; conditional E-value: 8.1e-06 PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakk 135 + +l+tq++ q + + ql++ le+ e+ki++l+a++ T288554_1 230 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEAER 265 66899****************************997 PP >> HrpB7 Bacterial type III secretion protein (HrpB7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.2 0.0016 6.5 60 116 .. 67 123 .. 52 130 .. 0.84 2 ? 2.8 0.4 0.031 1.3e+02 12 54 .. 142 184 .. 136 202 .. 0.67 3 ? 2.7 0.2 0.034 1.4e+02 8 37 .. 235 264 .. 229 272 .. 0.61 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0016 HrpB7 60 ddlttgsspfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarki 116 ++l tg+ +f++a++ ++++ ++++e++ +a++++l +++ + ++v++ ++k+ T288554_1 67 ASLDTGQMAFTLAQLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKL 123 77889******************************9998888888888887776666 PP == domain 2 score: 2.8 bits; conditional E-value: 0.031 HrpB7 12 rrarreerlraeleaaraalaaaeaalaaaqaqveaardavra 54 + + ++l+ae +a++++l a + +++++ ++++ + + ++a T288554_1 142 VKDQCIQKLQAEVKASQEQLIAQKLKHEKKVKKLQTDLATANA 184 5666667777777777777777776666666666665555444 PP == domain 3 score: 2.7 bits; conditional E-value: 0.034 HrpB7 8 tlverrarreerlraeleaaraalaaaeaa 37 t v +++ r +l++ le++ ++ +++ea+ T288554_1 235 TQVSLQTERITQLKEVLEEKERKIQQLEAE 264 445555566666666666666666666555 PP >> Fib_alpha Fibrinogen alpha/beta chain family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 6.6 0.21 8.4e+02 37 108 .. 95 176 .. 77 200 .. 0.44 2 ? 5.9 9.6 0.0031 12 27 123 .. 162 263 .. 158 267 .. 0.66 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.21 HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH CS Fib_alpha 37 lekleneleeisnstkeaeelvkeikdslrekqkskkd..........ndnvikksskeleeeilrlketidaqesnirvLq 108 + l ++l+ + ++++ e v++++++l++ ++++ +d+ i+k++ e++ +++l ++ ++e+++++Lq T288554_1 95 AKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEASggpyekmvlvKDQCIQKLQAEVKASQEQLIAQKLKHEKKVKKLQ 176 3333333333333333333333333333333332222223333333323555555555555444444444445555555555 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0031 CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH CS Fib_alpha 27 lkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn........dnvikksskeleeeilrlketidaqesnirvLqnvlesneqki 118 ++ + +k+++kl+ +l++++ t + el ++ik+ ++ k + +d+ +++ +++ i++l +++ q ++i +L++vle++e+ki T288554_1 162 IAQKLKHEKKVKKLQTDLATANAIT--VLELNEKIKTLYEGKPAPREDSllegfcggLPPVEEGDRKIS-LIMELSTQVSLQTERITQLKEVLEEKERKI 258 5566666677777777776655443..344444444445444444444222223333445667777777.8999************************** PP HHHHH CS Fib_alpha 119 qkLeq 123 q+Le T288554_1 259 QQLEA 263 ***97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1389 (0.0851834); expected 326.1 (0.02) Passed bias filter: 544 (0.033362); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 3491.27 // Query: T288554_2 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3691.03 // Query: T288554_3 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 3422.59 // Query: T352830_1 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 6722.95 // Query: T352830_2 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.73 # Mc/sec: 4969.22 // Query: T352830_3 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 5668.02 // Query: T163888_1 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 7404.22 // Query: T163888_2 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.61 # Mc/sec: 7156.76 // Query: T163888_3 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.71 # Mc/sec: 6148.77 // Query: T346320_1 [L=2747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.43s 00:00:01.52 Elapsed: 00:00:00.71 # Mc/sec: 11068.59 // Query: T346320_2 [L=2747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-07 30.6 0.0 3.2e-07 29.9 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.9 0.0 2e-11 3.2e-07 102 147 .. 4 49 .. 1 55 [. 0.93 Alignments for each domain: == domain 1 score: 29.9 bits; conditional E-value: 2e-11 ......................TEEEEESB--ST-TTHHHHHHHHH CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm 147 +++i+s++ ++++++ +ng++ e ++ k+g++qG++lSPllfn+++ T346320_2 4 LKIIRSIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIIF 49 689*****************99*********************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.68 # Mc/sec: 11556.91 // Query: T346320_3 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.72 # Mc/sec: 10910.89 // Query: T323229_1 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0096 16.0 15.5 0.0096 16.0 15.5 5.5 5 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 0.46 7.5e+03 27 45 .. 244 259 .. 241 260 .. 0.72 2 ! 10.4 3.8 3.3e-05 0.54 25 50 .] 326 351 .. 323 351 .. 0.87 3 ! 16.0 15.5 5.9e-07 0.0096 2 46 .. 377 424 .. 376 427 .. 0.94 4 ? -1.0 0.3 0.12 1.9e+03 11 30 .. 429 448 .. 423 455 .. 0.75 5 ? 0.9 0.2 0.03 4.9e+02 22 48 .. 550 574 .. 546 581 .. 0.56 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.46 DUF4705 27 aqLpvAsaGpklppagLsr 45 ++++ A +G++l+ L r T323229_1 244 LGPGDAIGGQELS---LAR 259 6677799999997...444 PP == domain 2 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323229_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 3 score: 16.0 bits; conditional E-value: 5.9e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323229_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999988 PP == domain 4 score: -1.0 bits; conditional E-value: 0.12 DUF4705 11 LqapaslqasglsrpsaqLp 30 L+a+ +l++ gl r ++ L+ T323229_1 429 LRAALLLPHGGLLRQGLTLT 448 56788889999988888776 PP == domain 5 score: 0.9 bits; conditional E-value: 0.03 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323229_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.71 # Mc/sec: 2687.57 // Query: T323229_2 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.5 7.2 32.7 0.47 10.6 5.5 4.1 4 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 9.3 0.00011 1.9 7 28 .. 330 363 .. 324 370 .. 0.92 2 ? 10.6 5.5 2.9e-05 0.47 8 44 .. 372 412 .. 369 414 .. 0.88 3 ? -2.0 1.2 0.24 3.9e+03 25 34 .. 421 430 .. 408 439 .. 0.50 4 ? -1.9 0.1 0.23 3.7e+03 28 38 .. 572 582 .. 562 597 .. 0.46 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 7 srrpLqa............paslqasglsrpsaq 28 +rpLqa pas+qas++++++a+ T323229_2 330 AWRPLQAqlflpaaspgppPASQQASSFGSAPAG 363 69*****************************985 PP == domain 2 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLs 44 + Lq + l++sgl +ps++ AsaGp+ p+a Ls T323229_2 372 SQALQ-AHILPPSGLYSPSSGRRRASAGPTVasqgrPQAQLS 412 678**.***********************9988887887776 PP == domain 3 score: -2.0 bits; conditional E-value: 0.24 DUF4705 25 psaqLpvAsa 34 + Lp+A + T323229_2 421 CPCLLPAACV 430 3444444433 PP == domain 4 score: -1.9 bits; conditional E-value: 0.23 DUF4705 28 qLpvAsaGpkl 38 ++ A Gp++ T323229_2 572 RPLSAWEGPVR 582 33444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 3123.46 // Query: T323229_3 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-06 27.8 22.1 0.00012 22.1 6.2 7.0 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.3 0.29 4.7e+03 35 48 .. 201 214 .. 186 215 .. 0.83 2 ? -1.5 0.2 0.17 2.8e+03 20 47 .. 247 274 .. 246 278 .. 0.82 3 ? 2.0 1.3 0.014 2.3e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 22.1 6.2 7.5e-09 0.00012 26 50 .] 357 381 .. 336 381 .. 0.81 5 ! 20.2 7.9 2.8e-08 0.00046 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? 0.7 2.9 0.036 5.9e+02 2 14 .. 431 446 .. 430 461 .. 0.73 7 ? -1.1 0.1 0.13 2.1e+03 24 38 .. 584 598 .. 574 613 .. 0.61 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.29 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323229_3 201 GPGRPTCSSSRPTS 214 78888888888887 PP == domain 2 score: -1.5 bits; conditional E-value: 0.17 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs 47 ++ r++a ++ A++ p l ++L + s T323229_3 247 RCHRRAGAEPGEATVRPDLGLGSLASGS 274 5778999999999999999888887764 PP == domain 3 score: 2.0 bits; conditional E-value: 0.014 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323229_3 324 PGLCLPHGGLCRPSC 338 345556677777755 PP == domain 4 score: 22.1 bits; conditional E-value: 7.5e-09 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323229_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 20.2 bits; conditional E-value: 2.8e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323229_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: 0.7 bits; conditional E-value: 0.036 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323229_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -1.1 bits; conditional E-value: 0.13 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323229_3 584 RGSRRPLSAWQGPVR 598 555556666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.66 # Mc/sec: 2886.84 // Query: T277650_1 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 2353.91 // Query: T277650_2 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2738.22 // Query: T277650_3 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.71 # Mc/sec: 1889.76 // Query: T089730_1 [L=8082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.66 9.8 4.0 1.3 8.9 4.0 1.4 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 4.0 7.9e-05 1.3 14 40 .. 2082 2108 .. 2071 2108 .. 0.79 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 7.9e-05 DUF3915 14 chrghccdrdrerererederekerek 40 c+ + +r rererere+ere+erek T089730_1 2082 CKWIGSGERPREREREREREREREREK 2108 555566789999999999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.40u 0.45s 00:00:02.85 Elapsed: 00:00:01.06 # Mc/sec: 21812.48 // Query: T089730_2 [L=8081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.7 6.3 0.039 13.8 6.3 1.3 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 6.3 2.4e-06 0.039 17 46 .. 2084 2113 .. 2077 2116 .. 0.81 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 2.4e-06 DUF3915 17 ghccdrdrerererederekerekkkerha 46 g + rdrererere+ere+ere++k++++ T089730_2 2084 GLALGRDRERERERERERERERERNKNKKE 2113 556789999999999999999999988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.46u 0.45s 00:00:02.91 Elapsed: 00:00:00.87 # Mc/sec: 26572.84 // Query: T089730_3 [L=8081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.42s 00:00:02.72 Elapsed: 00:00:00.86 # Mc/sec: 26881.82 // Query: T381522_1 [L=5760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.42s 00:00:02.50 Elapsed: 00:00:00.87 # Mc/sec: 18940.67 // Query: T381522_2 [L=5759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 551 (0.0337912); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.43s 00:00:02.80 Elapsed: 00:00:00.84 # Mc/sec: 19613.71 // Query: T381522_3 [L=5759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.36s 00:00:02.31 Elapsed: 00:00:00.88 # Mc/sec: 18722.18 // Query: T085619_1 [L=12138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.10u 0.46s 00:00:03.56 Elapsed: 00:00:00.86 # Mc/sec: 40377.62 // Query: T085619_2 [L=12138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-11 41.2 0.0 8.4e-11 40.7 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.7 0.0 5.2e-15 8.4e-11 305 348 .. 7584 7629 .. 7569 7664 .. 0.81 Alignments for each domain: == domain 1 score: 40.7 bits; conditional E-value: 5.2e-15 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085619_2 7584 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 7629 59***************************************96331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 424 (0.0260027); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.55u 0.59s 00:00:04.13 Elapsed: 00:00:00.95 # Mc/sec: 36552.37 // Query: T085619_3 [L=12137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00018 20.9 0.5 0.00038 19.9 0.5 1.6 1 DUF1725 Protein of unknown function (DUF1725) 0.0044 16.0 5.0 0.0078 15.2 5.0 1.3 1 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.5 4.6e-08 0.00038 1 19 [] 4299 4317 .. 4299 4317 .. 0.94 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.6e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F ++WM LEnI+LS isQ T085619_3 4299 SFGTTWMNLENIMLSVISQ 4317 6889***********9999 PP >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 5.0 9.6e-07 0.0078 64 170 .. 2695 2799 .. 2689 3390 .. 0.73 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 9.6e-07 PHO4 64 mlgmlaallaaavwlllatylglPvStthslvGaliGaalaaagsavkwgglvkivlswvlsPllggllaallfllvrrlil...lkaalkllpllvl 158 +++m +a++ +vw++++ ++++ v +++v + + ++ v + + +v+ +++ ++++++++a+++++v +++ + +a+ ++ ++v+ T085619_3 2695 VVVMAVAVIEVVVWVVMMAVIEVVVVVVVAMVMVEVVVVMV-----VVMVVAMVVVVVIMIVVVMAVVATAVVMVVVVVVVMvavVAMAVVMVVVVVV 2787 46777788888888888888887776666555443333333.....2222233455555555556666666555555555443334444444444444 PP PHO4 159 ltvainaflily 170 ++va+++++ ++ T085619_3 2788 VMVAVVVMVAVM 2799 444444443333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1357 (0.0832209); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 5.58u 0.68s 00:00:06.26 Elapsed: 00:00:01.24 # Mc/sec: 28001.53 // Query: T374601_1 [L=3331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 12.0 0.0 0.27 11.3 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 1.6e-05 0.27 25 106 .. 2806 2882 .. 2789 2885 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.6e-05 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374601_1 2806 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 2882 469******977.5555555556667788888887774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.69 # Mc/sec: 13810.76 // Query: T374601_2 [L=3330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-52 176.9 0.9 4.9e-52 176.4 0.9 1.2 1 Gag_p30 Gag P30 core shell protein 5.3e-14 52.3 0.0 1e-13 51.4 0.0 1.5 1 rve Integrase core domain 2e-13 50.3 0.0 3.7e-13 49.5 0.0 1.5 1 RVP Retroviral aspartyl protease 1.6e-06 28.1 0.2 4.2e-06 26.8 0.2 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger 9.6e-05 22.5 0.0 0.00018 21.6 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.041 14.4 0.0 0.076 13.6 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.047 14.1 0.0 0.09 13.2 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 176.4 0.9 2.1e-55 4.9e-52 2 210 .. 691 900 .. 690 901 .. 0.93 Alignments for each domain: == domain 1 score: 176.4 bits; conditional E-value: 2.1e-55 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpn.evdeafpltrpdwdyetae 100 y p ++++l nwk+n ps++e+pq++ l+++i+ th+ptw dc qll l+ t+er+rvl a k ++ + + p+ v + +p t p+wd + + T374601_2 691 YQPSTSANLLNWKNNTPSYTEKPQAIIDLLQTIIQTHNPTWADCHQLLMCLFNTDERRRVLQAATKWLEEHVPADYKNPQeYVMAQLPGTDPQWDPNERQ 790 88999************************************************************9886654444444331577889************* PP Gag_p30 101 greslkly.rqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlv 199 g ++l+ + r++ll gl+ a++ tn+ k+ ev+qgkeespa f erl eay +ytp+dp++pe++ + ++++ qsa dir+kl++ g+ +++ ++l+ T374601_2 791 GMQRLN-W*REALLEGLKKGAQKATNINKISEVIQGKEESPAQFYERLCEAYCMYTPFDPNNPENQRMINMALVSQSAEDIRRKLHKQAGFAGMNTSQLL 889 *99554.699****************************************************************************************** PP Gag_p30 200 keaekvynkre 210 a++v+ r+ T374601_2 890 EIANQVFVNRD 900 *******9876 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.4 0.0 4.5e-17 1e-13 3 100 .. 2084 2177 .. 2082 2177 .. 0.96 Alignments for each domain: == domain 1 score: 51.4 bits; conditional E-value: 4.5e-17 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l r + ++g p+ + sDng+++++ +++ ++ lgi+++++ ++ T374601_2 2084 APFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTHVLLRDLIPRFGL-PLQISSDNGPAFVADLLQKTAKVLGITWKLHTTY 2177 689999********..9999***********************.******************9.*****************************99876 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.5 0.0 1.6e-16 3.7e-13 3 100 .. 1008 1100 .. 1006 1101 .. 0.95 Alignments for each domain: == domain 1 score: 49.5 bits; conditional E-value: 1.6e-16 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++P++++ +ggk ie+l+DtGA++ v++ P + kk+ ++ g ++++ + ++ +++ + ++l +p++p++llGrdlL+kl +++ T374601_2 1008 KEPMVRMTVGGKDIEFLVDTGAEHPVVTTLVAPLS---KKTIDIIRTTGVSAKQAFCLPWTCTVGGHEVIH--QFLYMPDCPLPLLGRDLLSKLRATI 1100 68*********************************...88888999999999*******************..*********************9987 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.2 1.8e-09 4.2e-06 1 37 [. 2026 2062 .. 2026 2062 .. 0.98 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 1.8e-09 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCka 37 H++tHlG++ l++ll ++++l++++++++V+++C++ T374601_2 2026 HETTHLGQESLEKLLGWYFYILHLSALAKTVAQQCVT 2062 9**********************************86 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.0 7.7e-08 0.00018 34 117 .. 1851 1933 .. 1824 1936 .. 0.79 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 7.7e-08 EEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT.HHHHHHHHHCHCSSEEE CS RNase_H 34 sapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn.kelaellkelakkkkvq 117 +++l++ +++ ++ L+A+i a + + ++++vniytDS Y++ +++ + k++a ++ k++k +e+ +ll+++ k++kv T374601_2 1851 AKSLPQGTSARKTKLIALILAFElS--EGKTVNIYTDSWYAFLTLQLRGAFYKEKAL-LNAGRKDIKYqQEILQLLEAVWKPQKVA 1933 5778899***************955..9***************66554444444444.5666778998799999999999988875 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 3.2e-05 0.076 1 28 [. 1012 1039 .. 1012 1089 .. 0.84 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 3.2e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispela 28 v+ t++Gk+++fl+DTGa + ++++ +a T374601_2 1012 VRMTVGGKDIEFLVDTGAEHPVVTTLVA 1039 6789***************999986555 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 3.9e-05 0.09 1 28 [. 1012 1039 .. 1012 1094 .. 0.85 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 3.9e-05 EEEEETTEEEEEEEETT-SS-EEEHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseela 28 v +t+ gk+++flvDTGA++ ++++ +a T374601_2 1012 VRMTVGGKDIEFLVDTGAEHPVVTTLVA 1039 5789****************99998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 252 (0.0154544); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.43u 0.43s 00:00:01.86 Elapsed: 00:00:00.81 # Mc/sec: 11761.19 // Query: T374601_3 [L=3330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-10 41.3 0.0 1.7e-10 40.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 4.8e-09 35.9 0.1 8.2e-09 35.1 0.1 1.3 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.7 0.0 2e-14 1.7e-10 67 157 .. 1257 1328 .. 1235 1336 .. 0.87 Alignments for each domain: == domain 1 score: 40.7 bits; conditional E-value: 2e-14 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.. CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkr 157 + +++ lDlk+aF+s++l+ +++kl+af+ ++ +s + +++y++++lpqG+++SP++f ++ + l+++ +r T374601_3 1257 EDSWFTCLDLKNAFFSIRLSPESQKLFAFQWEDL-----ES--------------AVTTQYTWTRLPQGFKNSPTIFREALARDLQKIPTR 1328 678*****************************44.....33..............449*******************99998888887775 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.1 0.1 1e-12 8.2e-09 43 102 .. 511 568 .. 511 583 .. 0.88 Alignments for each domain: == domain 1 score: 35.1 bits; conditional E-value: 1e-12 GGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXXX CS Gag_MA 43 ptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflps 102 p+l+vgWP eG d + ++kv +kv Gk pD pYi tW +Lv dP +w++ ++ T374601_3 511 PALEVGWPSEGGLDRSFVSKVWHKVT--GKPENPDHFPYIDTWLQLVLDPLQWLRGQAAA 568 689**********************9..8899**********************976555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.54u 0.43s 00:00:01.97 Elapsed: 00:00:00.93 # Mc/sec: 10243.62 // Query: T327803_1 [L=4310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.89 # Mc/sec: 13854.13 // Query: T327803_2 [L=4310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.36s 00:00:01.79 Elapsed: 00:00:00.79 # Mc/sec: 15607.82 // Query: T327803_3 [L=4310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.42s 00:00:02.01 Elapsed: 00:00:00.81 # Mc/sec: 15222.44 // Query: T325787_1 [L=3484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-27 95.4 434.2 4.1e-09 36.4 14.3 36.1 32 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.4 3.8 1.8e-11 2.9e-07 1 50 [] 1837 1900 .. 1837 1900 .. 0.98 2 ! 4.3 6.2 0.0026 42 26 50 .] 1897 1921 .. 1894 1921 .. 0.96 3 ! 8.1 0.4 0.00017 2.7 17 46 .. 1921 1950 .. 1921 1952 .. 0.85 4 ? -4.5 10.8 1 1.6e+04 7 36 .. 1954 1994 .. 1950 1996 .. 0.62 5 ! 36.4 14.3 2.5e-13 4.1e-09 2 50 .] 1993 2052 .. 1992 2052 .. 0.92 6 ? -1.8 34.9 0.21 3.4e+03 1 50 [] 2092 2173 .. 2069 2173 .. 0.95 7 ! 12.7 6.8 6.2e-06 0.1 12 38 .. 2157 2182 .. 2153 2190 .. 0.83 8 ! 10.9 7.1 2.4e-05 0.38 1 34 [. 2178 2222 .. 2178 2224 .. 0.96 9 ! 3.0 3.3 0.0067 1.1e+02 24 38 .. 2223 2237 .. 2221 2243 .. 0.88 10 ? 1.8 0.9 0.016 2.7e+02 22 40 .. 2254 2274 .. 2245 2284 .. 0.73 11 ! 9.9 8.8 4.7e-05 0.77 1 49 [. 2295 2354 .. 2295 2355 .. 0.85 12 ? -0.4 5.1 0.079 1.3e+03 7 36 .. 2334 2374 .. 2333 2377 .. 0.67 13 ! 3.9 1.3 0.0035 56 27 46 .. 2384 2403 .. 2381 2405 .. 0.90 14 ! 11.7 13.1 1.3e-05 0.2 14 48 .. 2460 2494 .. 2442 2495 .. 0.94 15 ? -2.4 2.6 0.32 5.3e+03 14 31 .. 2502 2519 .. 2496 2523 .. 0.83 16 ! 15.8 3.4 6.5e-07 0.011 6 36 .. 2539 2568 .. 2528 2574 .. 0.87 17 ! 6.1 13.5 0.00074 12 3 47 .. 2580 2645 .. 2578 2648 .. 0.87 18 ? 0.7 14.9 0.035 5.7e+02 7 48 .. 2648 2692 .. 2646 2693 .. 0.81 19 ? -1.4 0.4 0.16 2.6e+03 25 38 .. 2705 2718 .. 2699 2722 .. 0.67 20 ! 9.9 19.4 4.7e-05 0.76 5 46 .. 2723 2764 .. 2707 2766 .. 0.86 21 ? 1.6 5.9 0.019 3.1e+02 20 47 .. 2771 2797 .. 2766 2799 .. 0.88 22 ? -0.1 10.7 0.063 1e+03 8 43 .. 2794 2833 .. 2789 2835 .. 0.87 23 ! 4.7 1.8 0.002 32 1 23 [. 2819 2840 .. 2819 2840 .. 0.95 24 ! 21.1 3.3 1.4e-08 0.00023 1 49 [. 2841 2919 .. 2841 2920 .. 0.97 25 ! 6.8 1.2 0.00045 7.3 15 39 .. 2934 2964 .. 2929 2976 .. 0.73 26 ! 8.0 12.0 0.00019 3.1 5 50 .] 3009 3091 .. 3007 3091 .. 0.92 27 ! 8.8 7.7 0.0001 1.7 2 38 .. 3097 3132 .. 3096 3139 .. 0.86 28 ! 33.1 7.3 2.7e-12 4.4e-08 1 50 [] 3149 3197 .. 3149 3197 .. 0.99 29 ! 4.5 9.5 0.0023 38 4 49 .. 3205 3249 .. 3202 3254 .. 0.88 30 ! 8.1 10.0 0.00017 2.8 9 50 .] 3284 3330 .. 3284 3330 .. 0.98 31 ? -0.7 1.2 0.097 1.6e+03 25 39 .. 3338 3363 .. 3337 3373 .. 0.67 32 ! 3.5 2.0 0.0046 75 12 50 .] 3379 3395 .. 3377 3396 .. 0.52 Alignments for each domain: == domain 1 score: 30.4 bits; conditional E-value: 1.8e-11 DUF4705 1 PgpAPasrrpLqa..............paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 P +A a+++pLq +++ +++g rps+ L vAs+G + p++gL s+CL T325787_1 1837 PNQAAAFQQPLQQrpssas*ss*wpl*AQLISHNGHLRPSFSLLVASPGREIPQVGLPHRSCCL 1900 789************************************************************8 PP == domain 2 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 s +Lp++s+ p+l+ rPssCL T325787_1 1897 SCCLPASSPVPVLSRSCVYRPSSCL 1921 68**********************9 PP == domain 3 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrP 46 lq ++ +++ qL +A++G k p+ s P T325787_1 1921 LQRASFDSAPTQLLAAFVGLKSLPVQHSIP 1950 68889***************9877877766 PP == domain 4 score: -4.5 bits; conditional E-value: 1 DUF4705 7 srrpLqa..........paslqas.glsrpsaqLpvAsaGp 36 s+rp qa p s +++ +l +ps++L++As Gp T325787_1 1954 SQRPSQAqllphsglprPFSSRPRgSLNKPSSRLTLASLGP 1994 56666655555555544444444415678999999999998 PP == domain 5 score: 36.4 bits; conditional E-value: 2.5e-13 DUF4705 2 gpAPasrrpLqa..........paslqasglsrpsaqL.pvAsaGpklppagLsrPssCL 50 gpA as+++Lqa + ++ g+srps++L p+A +Gpk+p++gL rPssCL T325787_1 1993 GPAQASQWRLQAqlpptptasrGSRRSQDGPSRPSSCLpPMARVGPKRPEVGLARPSSCL 2052 9***************99888877788899*******8358******************9 PP == domain 6 score: -1.8 bits; conditional E-value: 0.21 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 +gpA asr pLq + l+ ++ ++aqL +A++Gp l p+gL+rPssCL T325787_1 2092 TGPALASRHPLQVqncfqpaspgpalppgcgcrpSSCLATGTFGPTPAQLMAAFVGPRLl*vrpsrpclqLPGGLERPSSCL 2173 8***********9********************667788888**********************99988867*********9 PP == domain 7 score: 12.7 bits; conditional E-value: 6.2e-06 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpkl 38 + p ++ + gl rps++L++As+Gp l T325787_1 2157 R-PCLQLPGGLERPSSCLTAASPGPAL 2182 5.88999******************98 PP == domain 8 score: 10.9 bits; conditional E-value: 2.4e-05 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsa 34 PgpA +srrp ++ +++l++ gl r +++L++As+ T325787_1 2178 PGPALVSRRPPRDtfppasrqprkTQLLPPDGLFRLISCLTAASP 2222 9******************************************98 PP == domain 9 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 24 rpsaqLpvAsaGpkl 38 rp+++L +AsaGp + T325787_1 2223 RPGSCLSAASAGPAP 2237 8************86 PP == domain 10 score: 1.8 bits; conditional E-value: 0.016 DUF4705 22 lsrpsaqLpvAsaGpkl..pp 40 + rps+ +As+Gp+ +p T325787_1 2254 FQRPSFSFVAASPGPNWqaSP 2274 789************987744 PP == domain 11 score: 9.9 bits; conditional E-value: 4.7e-05 DUF4705 1 PgpAPasrrpLqa............paslqasglsrpsaqLpvAsaGpkl....ppagLsrPssC 49 PgpAPa+r+pL + ++lq+s s+++pvAs+ p+ p +gL r sC T325787_1 2295 PGPAPACRQPLLTrfvpsswrpl*aRNLLQHS-----SSGPPVASQRPSQaqllPHGGLPRLYSC 2354 9***************9999999977888888.....9999999999998667777777776666 PP == domain 12 score: -0.4 bits; conditional E-value: 0.079 DUF4705 7 srrpLqa...........paslqasglsrpsaqLpvAsaGp 36 s+rp qa ++ gl +p+a+L++ s Gp T325787_1 2334 SQRPSQAqllphgglprlYSCQPLGGLKKPGACLTLGSLGP 2374 55555555555555433335688899999999999999999 PP == domain 13 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 27 aqLpvAsaGpklppagLsrP 46 aqLp+++ Gp l+++g sr+ T325787_1 2384 AQLPPTPTGPRLSQVGPSRA 2403 8**************98876 PP == domain 14 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 ++ l+ +l+ ps++L ++s+Gp+l pagLsrP s T325787_1 2460 APALPVGSLHGPSSCLSPSSPGPVLFPAGLSRPNS 2494 78999********************99******88 PP == domain 15 score: -2.4 bits; conditional E-value: 0.32 DUF4705 14 paslqasglsrpsaqLpv 31 +++l+ + rps+++ + T325787_1 2502 AQLLPRKSHVRPSSCPAP 2519 789999999999999976 PP == domain 16 score: 15.8 bits; conditional E-value: 6.5e-07 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGp 36 a r++ +++l+ sglsrps++L++As G T325787_1 2539 APRWHGE-AQLLPDSGLSRPSSCLTLASLGH 2568 4567776.********************985 PP == domain 17 score: 6.1 bits; conditional E-value: 0.00074 DUF4705 3 pAPasrrpL..qa........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPs 47 pAPasr++L + + +l+ gl p ++ p+As Gp + p ++LsrP+ T325787_1 2580 PAPASRWHL*aHLvphhglhqATLLPFGGLRGPDSCVPMASLGPARasprppeahlcPSGSLSRPR 2645 9******98864477778888*************************99999888888888888886 PP == domain 18 score: 0.7 bits; conditional E-value: 0.035 DUF4705 7 srrpLqapaslqasg.lsrpsaqLpvAsaGpkl....ppagLsrPss 48 s rpL pa ++ g ls ps+ L +A+aGp + pp+ ++ Pss T325787_1 2648 SSRPL--PAQWPPPGlLSGPSSLLVAAPAGPAPasehPPVTRLLPSS 2692 67999..66666666156688888899******************98 PP == domain 19 score: -1.4 bits; conditional E-value: 0.16 DUF4705 25 psaqLpvAsaGpkl 38 s +Lp+As+ p++ T325787_1 2705 SSPGLPPASWRPSP 2718 45578888888876 PP == domain 20 score: 9.9 bits; conditional E-value: 4.7e-05 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagLsrP 46 Pasr+p + + +l++ g+srps++L +As+Gp + p g s+P T325787_1 2723 PASRQPPR-ARLLPHAGPSRPSSCLAAASPGPAPaQPDGVSQP 2764 89999999.***********************99655566665 PP == domain 21 score: 1.6 bits; conditional E-value: 0.019 DUF4705 20 sglsrpsaqLp.vAsaGpklppagLsrPs 47 +g+s ps++Lp +A aGp p+a++srP+ T325787_1 2771 VGPSGPSSCLPlMACAGP--PEAARSRPR 2797 799******9967****9..889999995 PP == domain 22 score: -0.1 bits; conditional E-value: 0.063 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagL 43 rp q +++l+ +g+ +++++vA++Gp + p+a L T325787_1 2794 SRPRQ-AQLLPGVGPWGHGLCPTVAPPGPARasawpPQAQL 2833 68889.***********************998888777766 PP == domain 23 score: 4.7 bits; conditional E-value: 0.002 DUF4705 1 PgpAPasrrpLqapaslqasgls 23 PgpA as +p q +++l+ gls T325787_1 2819 PGPARASAWPPQ-AQLLPVGGLS 2840 9***********.*****99986 PP == domain 24 score: 21.1 bits; conditional E-value: 1.4e-08 DUF4705 1 PgpAPasrrpLqa..............................paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 P+pA asr pLqa + + ++gl rps++ + + Gp+l+ + rPs C T325787_1 2841 PDPALASRHPLQAqscfqlldhfcaclvaaspspafaflqfleAELHFSNGLFRPSSCVCIVPSGPELSHVIVTRPSFC 2919 99****************************************999999*****************************99 PP == domain 25 score: 6.8 bits; conditional E-value: 0.00045 DUF4705 15 aslqasglsrpsaqLpvAsaGpkl......p 39 ++l gl p ++Lpv+++Gp + T325787_1 2934 QLLFNGGLPGPTFCLPVSTPGPATalvlflS 2964 6677789999************884444450 PP == domain 26 score: 8.0 bits; conditional E-value: 0.00019 DUF4705 5 PasrrpLqa................................paslqasglsrpsaqLpvAsaGpkl..pp...agLsrPssCL 50 Pas++pL a +++l+++gl rp+ L As Gp p+ + L rP sCL T325787_1 3009 PASWQPLVAqllphsslsmha*llpl*gtyrpktfliwasqAQLLPSVGLYRPGIILSTASLGPASpgPKhp*VNLTRPGSCL 3091 9******************************************************99999999988443356889*******8 PP == domain 27 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGpkl 38 g+A a+++pL q +l+a+gls+ps++L s+G + T325787_1 3097 GRAFACQWPL*pQ---LLPANGLSSPSFCLSSVSPGLAP 3132 899*****87755...**************999988765 PP == domain 28 score: 33.1 bits; conditional E-value: 2.7e-12 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasr pLq + + + ++l +ps++L + s+G +lp + L rP+sCL T325787_1 3149 PGPAPASRPPLQ-AYLKPYNSLFTPSSFLRLVSPGLELPHVYLTRPTSCL 3197 9***********.999999******************************9 PP == domain 29 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 APas+ Lqap+ l++++++ +s + + s G+ l + L +PssC T325787_1 3205 APASHGSLQAPNFLKSTSPGPASPFHQP-SKGQLLLHVCLPSPSSC 3249 9*****************9999877666.67777779********9 PP == domain 30 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 9 rpLqa.....paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +pLqa + l++sgl r+ ++L As +l p+ L rP sCL T325787_1 3284 QPLQAqlcvlSRVLPHSGLPRATFCLMSASCALVLLPGRLCRPCSCL 3330 89*********************************99*********9 PP == domain 31 score: -0.7 bits; conditional E-value: 0.097 DUF4705 25 psaqLpvAsaGpkl...........p 39 s++L +As p++ T325787_1 3338 SSSCLLAASMSPNPa*qqpvfaqllL 3363 699******99998777654444443 PP == domain 32 score: 3.5 bits; conditional E-value: 0.0046 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q +++l+ s L+rPssCL T325787_1 3379 Q-AQLLPLST---------------------LFRPSSCL 3395 5.55555555.....................55555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.66 # Mc/sec: 15101.71 // Query: T325787_2 [L=3484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-19 69.6 394.5 2e-07 31.0 7.6 33.8 31 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.4 0.075 1.2e+03 24 45 .. 1816 1842 .. 1812 1846 .. 0.75 2 ! 7.1 0.4 0.00035 5.7 19 39 .. 1858 1878 .. 1851 1879 .. 0.91 3 ! 5.6 7.3 0.001 16 2 38 .. 1874 1926 .. 1873 1933 .. 0.79 4 ! 17.2 3.2 2.5e-07 0.0041 1 36 [. 1915 1971 .. 1915 1980 .. 0.92 5 ! 4.5 7.2 0.0023 38 1 30 [. 1981 2009 .. 1981 2016 .. 0.92 6 ! 10.0 13.0 4.5e-05 0.73 1 44 [. 2046 2102 .. 2046 2105 .. 0.82 7 ? 2.3 5.0 0.011 1.8e+02 6 33 .. 2107 2141 .. 2106 2144 .. 0.85 8 ! 5.7 4.1 0.00093 15 8 38 .. 2174 2215 .. 2168 2221 .. 0.76 9 ! 9.0 10.4 8.6e-05 1.4 1 39 [. 2222 2260 .. 2222 2287 .. 0.88 10 ! 3.4 16.1 0.0052 84 2 47 .. 2256 2360 .. 2255 2362 .. 0.88 11 ? 1.9 5.0 0.014 2.3e+02 3 30 .. 2363 2389 .. 2361 2395 .. 0.86 12 ! 13.9 3.2 2.7e-06 0.044 25 50 .] 2403 2429 .. 2396 2429 .. 0.87 13 ? -0.8 11.8 0.1 1.7e+03 1 48 [. 2446 2504 .. 2446 2504 .. 0.84 14 ! 11.2 14.5 1.9e-05 0.31 2 50 .] 2470 2550 .. 2469 2550 .. 0.94 15 ! 10.8 5.2 2.4e-05 0.39 9 38 .. 2531 2559 .. 2530 2569 .. 0.81 16 ? 0.5 12.8 0.039 6.4e+02 1 34 [. 2555 2617 .. 2555 2620 .. 0.86 17 ! 15.3 10.3 9.3e-07 0.015 5 47 .. 2614 2655 .. 2611 2658 .. 0.92 18 ? -10.2 18.9 1 1.6e+04 1 49 [. 2663 2722 .. 2663 2723 .. 0.69 19 ! 5.0 0.2 0.0016 27 19 36 .. 2725 2742 .. 2724 2742 .. 0.93 20 ! 13.2 22.6 4.4e-06 0.072 1 50 [] 2740 2803 .. 2740 2803 .. 0.68 21 ! 11.5 10.6 1.5e-05 0.24 2 47 .. 2809 2854 .. 2808 2859 .. 0.92 22 ! 8.0 1.6 0.00018 2.9 5 43 .. 2865 2901 .. 2864 2913 .. 0.91 23 ? -3.0 5.6 0.5 8.1e+03 1 32 [. 2914 2947 .. 2914 2957 .. 0.69 24 ? 0.9 0.2 0.031 5e+02 24 34 .. 3016 3026 .. 3003 3036 .. 0.86 25 ! 5.0 0.5 0.0016 26 21 36 .. 3046 3061 .. 3045 3066 .. 0.81 26 ! 23.6 8.1 2.5e-09 4e-05 1 36 [. 3085 3119 .. 3085 3143 .. 0.89 27 ! 11.3 8.6 1.7e-05 0.27 8 43 .. 3145 3180 .. 3118 3182 .. 0.79 28 ? -3.6 1.1 0.74 1.2e+04 12 46 .. 3202 3214 .. 3189 3217 .. 0.50 29 ! 12.8 6.0 5.7e-06 0.092 3 46 .. 3246 3288 .. 3245 3292 .. 0.87 30 ? 1.7 0.8 0.017 2.8e+02 26 37 .. 3295 3306 .. 3287 3319 .. 0.76 31 ! 31.0 7.6 1.2e-11 2e-07 2 50 .] 3325 3384 .. 3324 3384 .. 0.99 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.075 DUF4705 24 rpsaqLpvAsaGpkl.....ppagLsr 45 + s +Lpv+s G + ++ +L+r T325787_2 1816 WSSYCLPVTSLGSSHaspwpRQTKLLR 1842 5689******99887766667777776 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00035 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 + gl rps++L+ A+ Gp +p T325787_2 1858 PDGLFRPSSFLTTATLGPAFP 1878 78999*************987 PP == domain 3 score: 5.6 bits; conditional E-value: 0.001 DUF4705 2 gpAPasrrpLqa................paslqasglsrpsaqLpvAsaGpkl 38 gpA +++pLqa p ++++s+l s ++ +As p l T325787_2 1874 GPAFPFWWPLQAekflksasptavaasrPLLQSQSSLAAVSTGPAPASKEPLL 1926 8*******************988888877777777777778888888877755 PP == domain 4 score: 17.2 bits; conditional E-value: 2.5e-07 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGp 36 +gpAPas+ pL + + ++sgl rps++L++A++G T325787_2 1915 TGPAPASKEPLLTrllpsswqpl*a*nlfqsstpYPVSPHSGLPRPSFCLTAAFPGH 1971 8*******************************9756779****************96 PP == domain 5 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 1 PgpAPasrrpL..qapaslqasglsrpsaqLp 30 + pAPas++pL q + ++sg srps+++p T325787_2 1981 TSPAPASHWPL*aQ---LRRHSGVSRPSSRPP 2009 57********9965...99***********99 PP == domain 6 score: 10.0 bits; conditional E-value: 4.5e-05 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLs 44 PgpAPa+rr+L a +++l + g rps++L +++ p a Ls T325787_2 2046 PGPAPACRRRLEAwplpphsgppqTQLLLQHGHLRPSSCLACWQPPQAQllPLAILS 2102 9*********************99999************975444433344555555 PP == domain 7 score: 2.3 bits; conditional E-value: 0.011 DUF4705 6 asrrpLqa............paslqasglsrpsaqLpvAs 33 +s rpLqa pas+qa+ saqL ++s T325787_2 2107 VSSRPLQAqlslpavaagpaPASQQAR-----SAQLLPSS 2141 689************999999999999.....66666665 PP == domain 8 score: 5.7 bits; conditional E-value: 0.00093 DUF4705 8 rrpLqa...........paslqasglsrpsaqLpvAsaGpkl 38 +rpL+a l+ ++ rps++L +As G + T325787_2 2174 QRPLRAqllsrvglpgtHFPLPRGSPERPSSCLLMASLGSSH 2215 5777777777777755422389999************99775 PP == domain 9 score: 9.0 bits; conditional E-value: 8.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvA.saGpklp 39 Pg+APa+rr L +l++ gl rp++ L++A + Gp +p T325787_2 2222 PGQAPAFRR-LPQVRLLRPDGLFRPGSSLTMAsFKGPAFP 2260 9********.65599***************9945899986 PP == domain 10 score: 3.4 bits; conditional E-value: 0.0052 DUF4705 2 gpAPasrrpLqa.............................................................paslqasglsrpsaqLpvAsaGpkl 38 gpA s+rpLqa + + + sgl rps++L++A++G + T325787_2 2256 GPAFPSWRPLQAqigkpplswwlspgllsrpstlsrlylqaqplpadsrf*lgscpapgglcrpetssstalqAHLWPRSGLPRPSSCLTAAFPGCIP 2353 899999999999999999999999999999999999999999999999999999999999999999999888777778899************99544 PP DUF4705 39 ppagLsrPs 47 a+Ls++s T325787_2 2354 --ASLSAAS 2360 ..7777765 PP == domain 11 score: 1.9 bits; conditional E-value: 0.014 DUF4705 3 pAPasrrpLqa..paslqasglsrpsaqLp 30 pAPas++ +++ + glsrps+++p T325787_2 2363 PAPASHW---Gl*AQLTPDGGLSRPSSRPP 2389 9******...55668**************9 PP == domain 12 score: 13.9 bits; conditional E-value: 2.7e-06 DUF4705 25 psaqLp.vAsaGpklppagLsrPssCL 50 p +++p +A a+pk p++gL PssCL T325787_2 2403 PNSCPPlMACADPKYPEVGLAGPSSCL 2429 56676648******************9 PP == domain 13 score: -0.8 bits; conditional E-value: 0.1 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 P pA as +p q + l++ + ++ + +As+Gp+lp rPss T325787_2 2446 PVPAVASAWPHQPkllpcllaasmGQALASHHPLQAQYCFQPASPGPTLPLSCACRPSS 2504 56899999998888999999888888888999999999999999999999888888877 PP == domain 14 score: 11.2 bits; conditional E-value: 1.9e-05 DUF4705 2 gpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 g+A as+ pLqa + l+ ++ ++aqL +A++ p p+g++rPssCL T325787_2 2470 GQALASHHPLQAqycfqpaspgptlplscacrpSSYLAKATFGPAPAQLLAAFVNPRIl*vrpfrpclwLPGGMERPSSCL 2550 89******************************878899999****************99***999999867*********9 PP == domain 15 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpkl 38 rp + p + + g+ rps++L++As+Gp l T325787_2 2531 RPFR-PCLWLPGGMERPSSCLTAASPGPAL 2559 5666.6666799****************98 PP == domain 16 score: 0.5 bits; conditional E-value: 0.039 DUF4705 1 PgpAPasrrpLqa.............................paslqasglsrpsaqLpvAsa 34 PgpA asr+p a + + ++s+ls +sa+L++As+ T325787_2 2555 PGPALASRWPPWAtfppasrqprqsrllppdgifrlisclttACTRPHSCLSVASAGLTPASQ 2617 9*********9999**********999999999998888888788888888888888888886 PP == domain 17 score: 15.3 bits; conditional E-value: 9.3e-07 DUF4705 5 PasrrpL..qapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 Pas++pL + + + +gl rp + L +As+Gp lp++gL +Ps T325787_2 2614 PASQWPL*aR---LVPRRGLLRPTFALLAASPGPGLPQVGLCQPS 2655 9999998855...99*****************************7 PP == domain 18 score: -10.2 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqapaslqas.....glsrpsaqL..pvAsaGpkl.....ppagLsrPssC 49 PgpAP s+ + + +++l+ + g+ ++++L p As Gp l p +gL rP sC T325787_2 2663 PGPAPCSWLRPR-AQLLPLNill*lGSCPAPSGLrrPEASSGPALqacllPRGGLPRPCSC 2722 899999998888.7777754333333333444433377888888888888**********9 PP == domain 19 score: 5.0 bits; conditional E-value: 0.0016 DUF4705 19 asglsrpsaqLpvAsaGp 36 + +l+ p+++L+ A++Gp T325787_2 2725 PGSLHEPGSCLTRAPPGP 2742 6799*************9 PP == domain 20 score: 13.2 bits; conditional E-value: 4.4e-06 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAs......aGpklppagLsrPssCL 50 PgpA asrrpLqa +++l++s ++++++ +As a p +p++gL rPssCL T325787_2 2740 PGPARASRRPLQArlppsptaspSPRLPSS--TSAPLGPAPASr*wpvrAHPRRPEVGLARPSSCL 2803 9***********999888844444444444..4455555555533333335666***********9 PP == domain 21 score: 11.5 bits; conditional E-value: 1.5e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagLsrPs 47 g A a ++pL+ +++ + g rps++L +As l pp+ LsrP+ T325787_2 2809 GTASAPQWPLR-AQLVPRLGRLRPSSCLWAASLQTRLsPPGILSRPR 2854 678899*****.************************9999******5 PP == domain 22 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 Pas ++Lq +++l ++ rp + +A Gp l ++L T325787_2 2865 PASLQHLQ-AQLLLFCSFLRPNSIFRMAYLGPAL-AFAL 2901 9*******.***********************99.3555 PP == domain 23 score: -3.0 bits; conditional E-value: 0.5 DUF4705 1 PgpAPasrrpLqapaslqa...sglsrpsaqLpvA 32 Pg A as +p + +++l++ s+l +s +p A T325787_2 2914 PGLASASGQPFK-AQLLPHklsSCLMAASQVPPSA 2947 89999*******.8999872213455555555555 PP == domain 24 score: 0.9 bits; conditional E-value: 0.031 DUF4705 24 rpsaqLpvAsa 34 +ps++L++As+ T325787_2 3016 WPSFCLTAASP 3026 7999***9996 PP == domain 25 score: 5.0 bits; conditional E-value: 0.0016 DUF4705 21 glsrpsaqLpvAsaGp 36 gl rps++L +As G T325787_2 3046 GLLRPSSCLLLASTGL 3061 6788999999999886 PP == domain 26 score: 23.6 bits; conditional E-value: 2.5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpAP+s rp + +l+a+gls+ps++Lp+As p T325787_2 3085 PGPAPVSLRPPE-AELLPANGLSSPSFCLPMASLAP 3119 9**********9.*******************9877 PP == domain 27 score: 11.3 bits; conditional E-value: 1.7e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 ++Lq +++l++ +l rp++ L+ As +p + + ++L T325787_2 3145 IWHLQ-AQLLPPGRLCRPISSLTTASLPPAPfSDLSL 3180 47777.***********************98777766 PP == domain 28 score: -3.6 bits; conditional E-value: 0.74 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 q +l pp+ LsrP T325787_2 3202 Q-VWLL---------------------PPMDLSRP 3214 4.3444.....................55555555 PP == domain 29 score: 12.8 bits; conditional E-value: 5.7e-06 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 pAP++++p +++l++sgl +p ++L+ A++ lp + rP T325787_2 3246 PAPVLWQPPE-AQLLPPSGLFWPNSFLTRAFQTTFLPFSSHYRP 3288 9********9.********************9777765555555 PP == domain 30 score: 1.7 bits; conditional E-value: 0.017 DUF4705 26 saqLpvAsaGpk 37 ++L+vAs+G+ T325787_2 3295 ESCLTVASQGQL 3306 58********95 PP == domain 31 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa+r p + ++ l+ + l ps++ +As G+k+p + LsrPssCL T325787_2 3325 GPAPALRCPFYKdpvpaswlpl*AQILPNNNLFLPSSCFLAASLGQKFPSVDLSRPSSCL 3384 9**********************************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.67 # Mc/sec: 14876.32 // Query: T325787_3 [L=3484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-25 88.7 413.1 3.7e-07 30.1 0.2 35.2 30 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.4 0.089 1.5e+03 16 34 .. 1829 1847 .. 1815 1849 .. 0.88 2 ? -6.7 7.0 1 1.6e+04 14 26 .. 1895 1907 .. 1863 1925 .. 0.66 3 ! 13.5 12.2 3.6e-06 0.059 1 38 [. 1958 2006 .. 1958 2016 .. 0.92 4 ! 17.2 15.7 2.5e-07 0.0041 12 48 .. 2081 2116 .. 2018 2117 .. 0.79 5 ? -3.5 0.2 0.74 1.2e+04 14 29 .. 2124 2139 .. 2121 2144 .. 0.79 6 ! 5.5 7.9 0.0011 17 13 36 .. 2157 2190 .. 2146 2198 .. 0.78 7 ! 2.6 2.5 0.0092 1.5e+02 14 41 .. 2223 2251 .. 2220 2257 .. 0.83 8 ? -1.6 16.5 0.19 3e+03 2 50 .] 2244 2300 .. 2244 2300 .. 0.89 9 ! 23.8 3.9 2.2e-09 3.6e-05 15 50 .] 2298 2333 .. 2297 2333 .. 0.92 10 ! 16.6 10.2 3.9e-07 0.0063 1 38 [. 2338 2386 .. 2338 2396 .. 0.89 11 ! 6.4 9.0 0.0006 9.7 1 47 [. 2423 2482 .. 2423 2483 .. 0.76 12 ? -5.5 15.1 1 1.6e+04 2 36 .. 2501 2546 .. 2479 2549 .. 0.59 13 ! 3.0 10.6 0.0069 1.1e+02 8 38 .. 2551 2592 .. 2551 2598 .. 0.72 14 ! 4.7 4.4 0.0019 32 1 33 [. 2599 2630 .. 2599 2630 .. 0.87 15 ? -3.7 10.0 0.85 1.4e+04 7 50 .] 2637 2679 .. 2632 2679 .. 0.45 16 ! 27.8 6.6 1.2e-10 2e-06 21 50 .] 2683 2712 .. 2681 2712 .. 0.94 17 ? 0.1 18.1 0.052 8.6e+02 1 29 [. 2729 2756 .. 2729 2788 .. 0.96 18 ! 18.8 14.8 8e-08 0.0013 1 38 [. 2797 2833 .. 2797 2839 .. 0.94 19 ! 2.5 15.3 0.0097 1.6e+02 2 49 .. 2830 2876 .. 2830 2877 .. 0.84 20 ? -4.0 5.7 1 1.6e+04 21 50 .] 2922 2958 .. 2917 2958 .. 0.47 21 ? -0.9 0.4 0.11 1.8e+03 25 50 .] 2985 3010 .. 2967 3010 .. 0.65 22 ! 7.1 0.9 0.00035 5.6 2 17 .. 3016 3034 .. 3015 3037 .. 0.82 23 ! 30.1 0.2 2.3e-11 3.7e-07 2 36 .. 3049 3108 .. 3048 3109 .. 0.96 24 ! 28.2 7.5 8.8e-11 1.4e-06 3 50 .] 3108 3154 .. 3107 3154 .. 0.95 25 ! 11.0 5.3 2.1e-05 0.34 6 30 .. 3164 3189 .. 3160 3190 .. 0.88 26 ! 16.1 1.6 5.5e-07 0.009 12 50 .] 3191 3228 .. 3189 3228 .. 0.92 27 ! 21.7 6.3 9.6e-09 0.00016 3 50 .] 3235 3281 .. 3231 3281 .. 0.84 28 ! 9.8 8.3 5.2e-05 0.85 15 42 .. 3267 3294 .. 3267 3312 .. 0.90 29 ? -4.7 8.1 1 1.6e+04 15 31 .. 3338 3354 .. 3292 3366 .. 0.66 30 ! 3.0 1.6 0.0067 1.1e+02 1 11 [. 3378 3388 .. 3378 3388 .. 0.97 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.089 DUF4705 16 slqasglsrpsaqLpvAsa 34 ++ ++gl +ps + +Asa T325787_3 1829 LMLHRGLAKPSCCVSAASA 1847 678999999*999999997 PP == domain 2 score: -6.7 bits; conditional E-value: 1 DUF4705 14 paslqasglsrps 26 p++l++ +s+ps T325787_3 1895 PQLLPPGLFSSPS 1907 5555555555554 PP == domain 3 score: 13.5 bits; conditional E-value: 3.6e-06 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl 38 PgpA as+rp a +++ +++glsrps++ +vAs+Gp + T325787_3 1958 PGPAFASQRPSPAif*pasr*pqqAQLPPHTGLSRPSSGVTVASPGPAP 2006 9**********************99999*******************88 PP == domain 4 score: 17.2 bits; conditional E-value: 2.5e-07 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 q ++ l+ +l+rps++L ++s+Gp+l pagLsrPss T325787_3 2081 Q-APALPVGSLHRPSSCLSPSSPGPELFPAGLSRPSS 2116 4.999**********************99******98 PP == domain 5 score: -3.5 bits; conditional E-value: 0.74 DUF4705 14 paslqasglsrpsaqL 29 +++l+ ++ rp +++ T325787_3 2124 AQLLPRNRHVRPNSCP 2139 6788888888999988 PP == domain 6 score: 5.5 bits; conditional E-value: 0.0011 DUF4705 13 a..........paslqasglsrpsaqLpvAsaGp 36 a +++l+ sgls ps++L As+G T325787_3 2157 AlpsapwrpgeAQLLPDSGLSGPSSCLASASPGH 2190 45555555555*********************95 PP == domain 7 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl.ppa 41 + +l+ g+ r +++ As Gp + ++ T325787_3 2223 ARLLPFGGFRRSGSCVLTASLGPARpSQW 2251 778999*****************995555 PP == domain 8 score: -1.6 bits; conditional E-value: 0.19 DUF4705 2 gpAPasrrpLqapaslqasglsrpsa........qLpvAsaGpklppagLsrPssCL 50 gpA s++pL +++ glsrp + +Lp+ s+Gp + + srPs CL T325787_3 2244 GPARPSQWPLSKAQLFLRGGLSRPKLaslpcpggCLPAYSPGPAHSRGCTSRPSPCL 2300 89999*******99999999999866555666669*********************8 PP == domain 9 score: 23.8 bits; conditional E-value: 2.2e-09 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 + lq + + +aqL +A++Gpk+ppa L+rP++ L T325787_3 2298 PCLQTAAFDSVRAQLLAAFVGPKPPPAQLFRPTCGL 2333 568889999***********************9987 PP == domain 10 score: 16.6 bits; conditional E-value: 3.9e-07 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl 38 PgpA asrrp a + +l+++g srps++L+v s+Gp + T325787_3 2338 PGPALASRRPSPAvflpasrrpqkARRLPHTGVSRPSSRLTVVSQGPAP 2386 899999999988899999999999***********************87 PP == domain 11 score: 6.4 bits; conditional E-value: 0.0006 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPs 47 Pg APa++rpL a +++l+++g + s+++ ++p p LsrPs T325787_3 2423 PGLAPACHRPLEArplpsksgtpqSQLLPQRGHISRSSCPAC-WQPPWAkllPLTILSRPS 2482 899*********999999999988888999999999988643.333322446777777775 PP == domain 12 score: -5.5 bits; conditional E-value: 1 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGp 36 gpAP+s++p a ++ + sgls p ++ pvA +Gp T325787_3 2501 GPAPTSQKPRSAqllpsswqpl*TPGSSKSGLSGPAFGSPVAWRGP 2546 4555555554447777777777766667777777777777777776 PP == domain 13 score: 3.0 bits; conditional E-value: 0.0069 DUF4705 8 rrpLqa..........pa.slqasglsrpsaqLpvAsaGpkl 38 +rpLqa p +l+ ++ p+++Lp+As G ++ T325787_3 2551 QRPLQAqllphvglpgPRfRLPRGSPDNPGSCLPMASLGSSR 2592 79***7777777777644257777778888888888887766 PP == domain 14 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 1 PgpAPasrrpLqapa.slqasglsrpsaqLpvAs 33 Pg Pa+r+p + a +l+++gl rp+++L +As T325787_3 2599 PGHTPAFRWPPR--A*LLRPNGLFRPGSCLAAAS 2630 899999999654..477***************97 PP == domain 15 score: -3.7 bits; conditional E-value: 0.85 DUF4705 7 srrpLqa.....paslqasglsrpsaqLpvAsaGpkl....ppagLsrPssCL 50 +++pLqa + +sa + +As++p + + + PssCL T325787_3 2637 FWQPLQAqdflkS----------ASASPVAASRPPLRaqllARGCARGPSSCL 2679 6788885333331..........455555555555443222223333344444 PP == domain 16 score: 27.8 bits; conditional E-value: 1.2e-10 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPssCL 50 + +++aqLp+As++pk+pp+ LsrP+sCL T325787_3 2683 SCDSAPAQLPAASVDPKPPPVQLSRPASCL 2712 6679*************************9 PP == domain 17 score: 0.1 bits; conditional E-value: 0.052 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqL 29 + pAPasr pLq +++ + glsrp++++ T325787_3 2729 TSPAPASRGPLQ-AQLVPRGGLSRPGSRP 2756 57**********.*************987 PP == domain 18 score: 18.8 bits; conditional E-value: 8e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPa rrpL + l++sg+s ps++L++A Gp + T325787_3 2797 PGPAPAWRRPLG-ARPLPHSGPSGPSSCLGLAASGPAP 2833 9**********9.***********************86 PP == domain 19 score: 2.5 bits; conditional E-value: 0.0097 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..........ppagLsrPssC 49 gpAPa+ rpL rp+++Lp++s+Gp+l p ++s+Ps C T325787_3 2830 GPAPACGRPLS-----------RPGSRLPASSPGPELfpvarpflclPRCSISKPSFC 2876 78999999985...........9999*********99888887777788888888888 PP == domain 20 score: -4.0 bits; conditional E-value: 1 DUF4705 21 glsrpsaqLpvAsa....Gpkl...ppagLsrPssCL 50 +l rps++L + + +p p + srPs+CL T325787_3 2922 SLLRPSFCLINSAPv*wrPPRShllPSCVHSRPSYCL 2958 4445555554433212213332344666667777776 PP == domain 21 score: -0.9 bits; conditional E-value: 0.11 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 s++L+++s + +++P sCL T325787_3 2985 LSFCLTMTSLDSAHFHCYIFKPFSCL 3010 47888888888888888888888887 PP == domain 22 score: 7.1 bits; conditional E-value: 0.00035 DUF4705 2 gpAPasrrpLqa...pasl 17 gpA as++pL+a pasl T325787_3 3016 GPASASQQPLHAclaPASL 3034 9**********76666665 PP == domain 23 score: 30.1 bits; conditional E-value: 2.3e-11 DUF4705 2 gpAPasrrpLqa.........................paslqasglsrpsaqLpvAsaGp 36 gpAPa+ +pLqa + +l++ gl rps++Lp+As p T325787_3 3049 GPAPAFCWPLQAwhhpfnslfrpglsrtktslsqphqARLLSPCGLQRPSFCLPMASLAP 3108 9*******************************************************9655 PP == domain 24 score: 28.2 bits; conditional E-value: 8.8e-11 DUF4705 3 pAPasrrpL..qapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 pA a+++pL q +l+ glsr s++L AsaG klp++g+srPssCL T325787_3 3108 PAFACQWPL*pQ---LLPFIGLSRLSSFLFTASAGLKLPQFGISRPSSCL 3154 999****87755...**********************************9 PP == domain 25 score: 11.0 bits; conditional E-value: 2.1e-05 DUF4705 6 asrrpLqapaslqasglsrp..saqLp 30 a+++pL+ p++l++++lsrp s++Lp T325787_3 3164 ALQQPLY-PQLLSPTCLSRPrtSSCLP 3189 89*****.**********985568887 PP == domain 26 score: 16.1 bits; conditional E-value: 5.5e-07 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q + +l++s+ + +++Lp s+Gpkl+++ L rP +L T325787_3 3191 Q-AHLLPSSSVYKFGSCLPWISPGPKLSQVNLTRPGFSL 3228 5.889******************************7776 PP == domain 27 score: 21.7 bits; conditional E-value: 9.6e-09 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 pA as p +++l +l rps++L vAs Gp+l+ g srP+sCL T325787_3 3235 PAFASCLPSE-SQLLFYGSLLRPSSCLLVASFGPTLSSPGPSRPRSCL 3281 4444444444.8899999*****************************9 PP == domain 28 score: 9.8 bits; conditional E-value: 5.2e-05 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppag 42 ++l++ g+srp+++L +A+ Gp l+p++ T325787_3 3267 PTLSSPGPSRPRSCLLAATTGPALRPFK 3294 679999******************8875 PP == domain 29 score: -4.7 bits; conditional E-value: 1 DUF4705 15 aslqasglsrpsaqLpv 31 + l++ +l p ++L+ T325787_3 3338 QFLPPGCLYEPKSCLTT 3354 56777777777777765 PP == domain 30 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 1 PgpAPasrrpL 11 PgpAPas+ pL T325787_3 3378 PGPAPASQHPL 3388 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 13114.65 // Query: T137775_1 [L=2186] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.058 13.3 8.7 1.1e+02 2.7 0.0 6.2 6 BmKX BmKX 0.75 9.6 4.9 1.8e+02 2.0 0.0 4.5 4 DUF3903 Domain of unknown function (DUF3903) Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.069 5.6e+02 4 19 .. 1654 1669 .. 1653 1677 .. 0.83 2 ? 2.4 0.0 0.018 1.5e+02 4 19 .. 1698 1713 .. 1697 1721 .. 0.85 3 ? 2.4 0.0 0.018 1.5e+02 4 19 .. 1742 1757 .. 1741 1765 .. 0.85 4 ? 2.7 0.0 0.014 1.1e+02 4 19 .. 1814 1829 .. 1813 1838 .. 0.83 5 ? 0.5 0.0 0.069 5.6e+02 4 19 .. 1886 1901 .. 1885 1909 .. 0.83 6 ? 1.3 1.3 0.039 3.2e+02 4 18 .. 1930 1944 .. 1929 1945 .. 0.93 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.069 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ T G T137775_1 1654 GECEARPGRALLTTGV 1669 9*****9999999996 PP == domain 2 score: 2.4 bits; conditional E-value: 0.018 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_1 1698 GECEARPGRALLTAGV 1713 9*************96 PP == domain 3 score: 2.4 bits; conditional E-value: 0.018 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_1 1742 GECEARPGRALLTAGV 1757 9*************96 PP == domain 4 score: 2.7 bits; conditional E-value: 0.014 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137775_1 1814 GECEARPGRVLCATGV 1829 9***********9996 PP == domain 5 score: 0.5 bits; conditional E-value: 0.069 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ T G T137775_1 1886 GECEARPGRALLTTGV 1901 9*****9999999996 PP == domain 6 score: 1.3 bits; conditional E-value: 0.039 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + +C G T137775_1 1930 GECEARPGGVLCATG 1944 9***********988 PP >> DUF3903 Domain of unknown function (DUF3903) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.022 1.8e+02 14 26 .. 1653 1665 .. 1648 1669 .. 0.89 2 ? 1.6 0.1 0.029 2.4e+02 14 26 .. 1697 1709 .. 1693 1712 .. 0.91 3 ? 1.6 0.1 0.029 2.4e+02 14 26 .. 1741 1753 .. 1737 1756 .. 0.91 4 ? 1.9 0.0 0.024 1.9e+02 14 26 .. 1885 1897 .. 1881 1901 .. 0.90 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.022 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137775_1 1653 RGECEARPGRALL 1665 99**********8 PP == domain 2 score: 1.6 bits; conditional E-value: 0.029 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137775_1 1697 RGECEARPGRALL 1709 89**********9 PP == domain 3 score: 1.6 bits; conditional E-value: 0.029 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137775_1 1741 RGECEARPGRALL 1753 89**********9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.024 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137775_1 1885 RGECEARPGRALL 1897 89**********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2186 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:00.71 # Mc/sec: 8808.13 // Query: T137775_2 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.032 14.1 0.3 1.1e+02 2.7 0.0 4.5 4 BmKX BmKX Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.0089 1.5e+02 4 19 .. 1683 1698 .. 1682 1706 .. 0.85 2 ? 2.4 0.0 0.0089 1.5e+02 4 19 .. 1727 1742 .. 1726 1750 .. 0.85 3 ? -1.4 0.0 0.13 2.2e+03 4 18 .. 1799 1813 .. 1798 1822 .. 0.80 4 ? 2.7 0.0 0.007 1.1e+02 4 19 .. 1915 1930 .. 1914 1939 .. 0.83 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.0089 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_2 1683 GECEARPGRALLTAGV 1698 9*************96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.0089 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_2 1727 GECEARPGRALLTAGV 1742 9*************96 PP == domain 3 score: -1.4 bits; conditional E-value: 0.13 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + + T G T137775_2 1799 GECEARPGRVLLTTG 1813 9****9988888887 PP == domain 4 score: 2.7 bits; conditional E-value: 0.007 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137775_2 1915 GECEARPGRVLCATGV 1930 9***********9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 9059.30 // Query: T137775_3 [L=2185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.9 4.6 1.3e+02 2.5 0.1 5.7 6 BmKX BmKX Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.0089 1.5e+02 4 19 .. 1668 1683 .. 1667 1691 .. 0.85 2 ? 2.4 0.0 0.0089 1.5e+02 4 19 .. 1712 1727 .. 1711 1735 .. 0.85 3 ? 2.4 0.0 0.0089 1.5e+02 4 19 .. 1756 1771 .. 1755 1779 .. 0.85 4 ? -0.4 0.1 0.068 1.1e+03 5 21 .. 1785 1801 .. 1784 1808 .. 0.83 5 ? 2.5 0.1 0.0082 1.3e+02 4 19 .. 1828 1843 .. 1827 1851 .. 0.85 6 ? -1.0 0.0 0.1 1.7e+03 4 18 .. 1900 1914 .. 1899 1923 .. 0.79 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.0089 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_3 1668 GECEARPGRALLTAGV 1683 9*************96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.0089 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_3 1712 GECEARPGRALLTAGV 1727 9*************96 PP == domain 3 score: 2.4 bits; conditional E-value: 0.0089 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137775_3 1756 GECEARPGRALLTAGV 1771 9*************96 PP == domain 4 score: -0.4 bits; conditional E-value: 0.068 BmKX 5 ECkakgeAamCTaGtdd 21 EC a+ + +C G + T137775_3 1785 ECEARPGRVLCATGVSA 1801 9***********99764 PP == domain 5 score: 2.5 bits; conditional E-value: 0.0082 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137775_3 1828 GECEARPGRVLCATGV 1843 9***********9996 PP == domain 6 score: -1.0 bits; conditional E-value: 0.1 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + a T G T137775_3 1900 GECEARPGRAFLTTG 1914 9****9888887877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 9922.08 // Query: T276206_1 [L=3946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.82 # Mc/sec: 13766.87 // Query: T276206_2 [L=3946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.74 # Mc/sec: 15255.18 // Query: T276206_3 [L=3945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:00.67 # Mc/sec: 16844.74 // Query: T002447_1 [L=3556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.71 # Mc/sec: 14328.33 // Query: T002447_2 [L=3556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.75 # Mc/sec: 13564.15 // Query: T002447_3 [L=3556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.67 # Mc/sec: 15183.75 // Query: T249688_1 [L=3727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.91 # Mc/sec: 11716.83 // Query: T249688_2 [L=3727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.71 # Mc/sec: 15017.34 // Query: T249688_3 [L=3727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.60 # Mc/sec: 17770.52 // Query: T157077_1 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 4256.21 // Query: T157077_2 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 4256.21 // Query: T157077_3 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3929.59 // Query: T020238_1 [L=1985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 10325.00 // Query: T020238_2 [L=1985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 10325.00 // Query: T020238_3 [L=1984] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1984 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 10135.51 // Query: T078929_1 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-40 138.4 14.0 4.4e-40 138.1 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 1 7.7 11.7 1.4 7.3 11.7 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 1.1 8.0 9.9 1.8 7.2 9.9 1.3 1 Spc7 Spc7 kinetochore protein 1.8 8.6 10.2 1.4 8.9 3.0 2.2 2 BRE1 BRE1 E3 ubiquitin ligase 7.5 6.5 12.9 12 5.9 12.9 1.1 1 Tropomyosin_1 Tropomyosin like Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.1 14.0 1.3e-43 4.4e-40 126 312 .] 359 546 .. 356 546 .. 0.96 Alignments for each domain: == domain 1 score: 138.1 bits; conditional E-value: 1.3e-43 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078929_1 359 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 456 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078929_1 457 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 546 ***************************************************************************************975 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 11.7 0.00042 1.4 412 502 .. 439 525 .. 428 538 .. 0.86 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00042 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078929_1 439 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 525 44444444....46999*******************************9999999**********************************85 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 9.9 0.00055 1.8 198 287 .. 428 517 .. 419 541 .. 0.82 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00055 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkiv 287 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ T078929_1 428 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLK 517 567788999999999999999999999999999999999999999999999999999999988888888888888888887777666654 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 2.5 0.04 1.3e+02 7 51 .. 433 477 .. 428 486 .. 0.81 2 ? 8.9 3.0 0.00044 1.4 14 69 .. 486 541 .. 475 544 .. 0.87 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.04 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaam 51 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078929_1 433 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLE 477 567777889999999999999999999999999999999877666 PP == domain 2 score: 8.9 bits; conditional E-value: 0.00044 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078929_1 486 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 541 445667788889**************************************999986 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 12.9 0.0035 12 8 102 .. 422 518 .. 419 525 .. 0.86 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0035 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078929_1 422 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 517 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078929_1 518 Q 518 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 632 (0.0387587); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 9964.42 // Query: T078929_2 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 10136.22 // Query: T078929_3 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 10314.05 // Query: T113914_1 [L=1790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 9144.44 // Query: T113914_2 [L=1789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 8123.85 // Query: T113914_3 [L=1789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 8123.85 // Query: T221671_1 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5389.43 // Query: T221671_2 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 5966.87 // Query: T221671_3 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 6819.28 // Query: T069603_1 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 4086.13 // Query: T069603_2 [L=756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3665.74 // Query: T069603_3 [L=756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-18 64.4 0.2 5.8e-18 64.4 0.2 2.2 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.5 0.066 1.1e+03 7 35 .. 436 463 .. 433 464 .. 0.73 2 ! 64.4 0.2 3.6e-22 5.8e-18 9 60 .. 565 613 .. 564 615 .. 0.97 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.066 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltV 35 +q +k+ +++ + k el++ k+m +V T069603_3 436 TPSQFKKKERKKESFAK-ELRALKMMSIV 463 45677777888888887.59999999887 PP == domain 2 score: 64.4 bits; conditional E-value: 3.6e-22 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa 60 aqWl +e+p+++pk hqk vm+tVwWsa++li+y f +p+etitse+Ya T069603_3 565 AQWLGPEEAPQHFPK---HQKQVMVTVWWSAASLIHYGFPNPSETITSEKYA 613 7*************7...8********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 4080.73 // Query: T183090_1 [L=583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.63 # Mc/sec: 2647.40 // Query: T183090_2 [L=583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0028 17.8 2.0 13 6.0 0.0 3.3 3 AMPKBI 5'-AMP-activated protein kinase beta subunit, inter Domain annotation for each model (and alignments): >> AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.0 0.0 0.00083 13 9 61 .. 380 433 .. 376 437 .. 0.83 2 ! 5.9 0.0 0.00088 14 9 53 .. 450 493 .. 445 503 .. 0.84 3 ! 3.6 0.1 0.0044 73 9 53 .. 518 563 .. 513 573 .. 0.81 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00083 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikngvlavgctt 61 Pp L+++ l++ss+s++ + +++ + P + ++HL ++ + + l +t T183090_2 380 PPSLRRLPLQRSSTSSSRQDRETHSITAPlSSTAIQHLQQQAGQGDALHHCTTF 433 99*********999999999999999999456789***9999998887766655 PP == domain 2 score: 5.9 bits; conditional E-value: 0.00088 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikng 53 Pp L++ l++ s+s+a + d+ + p P+ ++HL ++ + + T183090_2 450 PPSLHHFPLQRFSTSTAGQGDTLHPAP-PSSTAIQHLQQQAGQGD 493 99*********8888877777777777.*********99887765 PP == domain 3 score: 3.6 bits; conditional E-value: 0.0044 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikng 53 Pp L++ l++ss+s++ + ++ + P + ++HL ++ + + T183090_2 518 PPSLHHFPLQRSSTSSSRQDRETPSITAPlSSTAIQHLQQQAGQGD 563 99*********88888888888888888845678999998877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 2527.07 // Query: T183090_3 [L=582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.69 # Mc/sec: 2413.05 // Query: T090313_1 [L=2196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 969 (0.059426); expected 326.1 (0.02) Passed bias filter: 282 (0.0172942); expected 326.1 (0.02) Passed Vit filter: 134 (0.00821783); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.46s 00:00:02.62 Elapsed: 00:00:00.92 # Mc/sec: 6828.68 // Query: T090313_2 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 955 (0.0585674); expected 326.1 (0.02) Passed bias filter: 302 (0.0185208); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.43s 00:00:02.44 Elapsed: 00:00:00.81 # Mc/sec: 7752.50 // Query: T090313_3 [L=2195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-32 110.8 11.3 4.5e-32 109.9 11.3 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.9 11.3 2.8e-36 4.5e-32 12 89 .] 1344 1420 .. 1340 1420 .. 0.97 Alignments for each domain: == domain 1 score: 109.9 bits; conditional E-value: 2.8e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090313_3 1344 QPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 1420 79*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1122 (0.068809); expected 326.1 (0.02) Passed bias filter: 368 (0.0225684); expected 326.1 (0.02) Passed Vit filter: 165 (0.010119); expected 16.3 (0.001) Passed Fwd filter: 46 (0.00282105); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.42u 0.48s 00:00:02.90 Elapsed: 00:00:00.84 # Mc/sec: 7475.62 // Query: T017433_1 [L=4205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.42s 00:00:01.92 Elapsed: 00:00:00.74 # Mc/sec: 16256.47 // Query: T017433_2 [L=4204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.76 # Mc/sec: 15824.91 // Query: T017433_3 [L=4204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.69 # Mc/sec: 17430.33 // Query: T367593_1 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 5599.81 // Query: T367593_2 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4513.28 // Query: T367593_3 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 4446.91 // Query: T226939_1 [L=9261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.72u 0.47s 00:00:03.19 Elapsed: 00:00:01.11 # Mc/sec: 23868.60 // Query: T226939_2 [L=9261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.60u 0.37s 00:00:02.97 Elapsed: 00:00:00.93 # Mc/sec: 28488.33 // Query: T226939_3 [L=9260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.54u 0.41s 00:00:02.95 Elapsed: 00:00:00.88 # Mc/sec: 30103.73 // Query: T276642_1 [L=4838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00093 17.0 3.4 4.5 4.8 0.0 5.4 7 Raffinose_syn Raffinose synthase or seed imbibition protein ------ inclusion threshold ------ 0.18 11.3 2.0 38 3.7 0.0 4.8 6 Peptidase_M41 Peptidase family M41 Domain annotation for each model (and alignments): >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.8 0.0 0.00055 4.5 89 129 .. 1386 1426 .. 1381 1431 .. 0.91 2 ? -1.6 0.0 0.047 3.9e+02 90 116 .. 1463 1489 .. 1456 1491 .. 0.85 3 ! 4.0 0.0 0.00098 8 90 147 .. 1614 1669 .. 1608 1682 .. 0.70 4 ! 1.1 0.0 0.007 57 89 120 .. 1689 1722 .. 1683 1729 .. 0.80 5 ? -2.3 0.0 0.077 6.2e+02 90 120 .. 2131 2163 .. 2126 2171 .. 0.70 6 ? -0.5 0.0 0.022 1.8e+02 90 126 .. 2354 2390 .. 2348 2400 .. 0.85 7 ? -3.4 0.0 0.17 1.4e+03 89 120 .. 2444 2477 .. 2442 2481 .. 0.71 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.00055 Raffinose_syn 89 sGrdieaetqflllesksesdgedeqkvyvvllPlleGsfr 129 s rdi++etq++ll ++ s+ + ++++ vll + Gs r T276642_1 1386 SSRDINKETQLVLLSVTKGSSRDINKETQLVLLSVTKGSSR 1426 679**************99*99*************999988 PP == domain 2 score: -1.6 bits; conditional E-value: 0.047 Raffinose_syn 90 Grdieaetqflllesksesdgedeqkv 116 di++etq++ll ++ s++++++k T276642_1 1463 SCDINKETQLVLLSVTKASSPDNNKKI 1489 469*************99999988875 PP == domain 3 score: 4.0 bits; conditional E-value: 0.00098 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPlleGsfraslqggekdeveiclesG 147 rdi++etq++ l ++ s+ + +++++ vll + Gs r + e + v++ + G T276642_1 1614 SRDINKETQLVPLSVTKASSRDINKETHLVLLSVTKGSSRDI--SKETQLVLLSVTKG 1669 578888888888888888888888888888888888887765..33444455555444 PP == domain 4 score: 1.1 bits; conditional E-value: 0.007 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 s rdi+ etq++l+ ++ s+ ++e+++y +l T276642_1 1689 SSRDINRETQLVLVSVTKASSCdiDKETQSYLLL 1722 679***********99955555348888888765 PP == domain 5 score: -2.3 bits; conditional E-value: 0.077 Raffinose_syn 90 Grdieaetqflllesksesdg..edeqkvyvvl 120 rd ++etq++ll ++ s+ ++e++++ +l T276642_1 2131 SRDFNKETQLVLLSVTKASSHdiNKETESFYLL 2163 48************9966665234455555444 PP == domain 6 score: -0.5 bits; conditional E-value: 0.022 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPlleG 126 rdi++et ++ll ++ s+ + +++++ vll + T276642_1 2354 SRDINKETHLVLLSVTKASSCDINKETHLVLLSVTKV 2390 48**************99999******9999987665 PP == domain 7 score: -3.4 bits; conditional E-value: 0.17 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 + rdi++et ++ll ++ s+ ++e++++ +l T276642_1 2444 NSRDINKETHLVLLSVTKASSRdiSKETQSFYLL 2477 679***********99966655235555555554 PP >> Peptidase_M41 Peptidase family M41 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.0 0.064 5.2e+02 98 124 .. 1396 1422 .. 1392 1432 .. 0.84 2 ? 3.7 0.0 0.0047 38 97 124 .. 1433 1460 .. 1430 1467 .. 0.88 3 ? -1.5 0.0 0.19 1.5e+03 102 124 .. 1608 1630 .. 1604 1660 .. 0.77 4 ? 1.0 0.0 0.031 2.6e+02 103 124 .. 1647 1668 .. 1636 1703 .. 0.62 5 ? -2.4 0.0 0.35 2.9e+03 99 123 .. 2122 2146 .. 2119 2148 .. 0.85 6 ? -3.6 0.0 0.78 6.4e+03 102 123 .. 2348 2369 .. 2344 2371 .. 0.85 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.064 HHHHSXBGGGHHHHHHHHHHHHHHHHT CS Peptidase_M41 98 lifgevttGasnDlekatkiarkmvte 124 l++ +vt G+s D++k t+++ vt+ T276642_1 1396 LVLLSVTKGSSRDINKETQLVLLSVTK 1422 67779**************99888876 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0047 HHHHHSXBGGGHHHHHHHHHHHHHHHHT CS Peptidase_M41 97 elifgevttGasnDlekatkiarkmvte 124 +l++ +vttG+s D++k t+++ vt+ T276642_1 1433 HLVLPSVTTGSSRDINKETNLVLLSVTK 1460 578889***************9888876 PP == domain 3 score: -1.5 bits; conditional E-value: 0.19 SXBGGGHHHHHHHHHHHHHHHHT CS Peptidase_M41 102 evttGasnDlekatkiarkmvte 124 +vt G+s D++k t+++ vt+ T276642_1 1608 SVTKGSSRDINKETQLVPLSVTK 1630 68889999999988888777765 PP == domain 4 score: 1.0 bits; conditional E-value: 0.031 XBGGGHHHHHHHHHHHHHHHHT CS Peptidase_M41 103 vttGasnDlekatkiarkmvte 124 vt G+s D++k t+++ vt+ T276642_1 1647 VTKGSSRDISKETQLVLLSVTK 1668 5555555555555555444443 PP == domain 5 score: -2.4 bits; conditional E-value: 0.35 HHHSXBGGGHHHHHHHHHHHHHHHH CS Peptidase_M41 99 ifgevttGasnDlekatkiarkmvt 123 ++ +vt G s D++k t+++ vt T276642_1 2122 VLLSVTKGGSRDFNKETQLVLLSVT 2146 6668**************9987776 PP == domain 6 score: -3.6 bits; conditional E-value: 0.78 SXBGGGHHHHHHHHHHHHHHHH CS Peptidase_M41 102 evttGasnDlekatkiarkmvt 123 +vt G s D++k t+++ vt T276642_1 2348 SVTKGGSRDINKETHLVLLSVT 2369 79*************9987776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.65u 0.38s 00:00:02.02 Elapsed: 00:00:00.75 # Mc/sec: 18454.26 // Query: T276642_2 [L=4838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 14.6 0.2 58 2.3 0.0 5.1 6 DUF759 Borrelia burgdorferi protein of unknown functi 0.089 10.4 0.5 4.5 4.8 0.0 3.8 5 Raffinose_syn Raffinose synthase or seed imbibition protein Domain annotation for each model (and alignments): >> DUF759 Borrelia burgdorferi protein of unknown function (DUF759) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 0.029 2.4e+02 203 234 .. 1343 1374 .. 1331 1387 .. 0.84 2 ? 1.3 0.0 0.014 1.1e+02 204 234 .. 1551 1581 .. 1532 1603 .. 0.63 3 ? -1.8 0.0 0.12 1e+03 201 234 .. 1790 1823 .. 1782 1836 .. 0.80 4 ? 0.8 0.0 0.02 1.6e+02 196 234 .. 2061 2099 .. 2055 2106 .. 0.89 5 ? 0.1 0.0 0.032 2.6e+02 198 232 .. 2303 2338 .. 2257 2345 .. 0.56 6 ? 2.3 0.0 0.0071 58 201 234 .. 2526 2559 .. 2518 2573 .. 0.87 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.029 DUF759 203 lldgmkgferdlekeeflnqasvfkgtlrdld 234 ll k rd++ke l sv kg+ rd+ T276642_2 1343 LLSVTKASSRDINKETHLVLLSVTKGSSRDIS 1374 566789999********************986 PP == domain 2 score: 1.3 bits; conditional E-value: 0.014 DUF759 204 ldgmkgferdlekeeflnqasvfkgtlrdld 234 l +kg rd++ke sv kg+ rd+ T276642_2 1551 LSVIKGSPRDINKETQSVLLSVTKGSSRDIS 1581 4466666666666666666666666666653 PP == domain 3 score: -1.8 bits; conditional E-value: 0.12 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l+ sv k + d++ T276642_2 1790 TVLLPVTKGGSRDINKETHLDLLSVTKASSCDIN 1823 4567789*******************99877764 PP == domain 4 score: 0.8 bits; conditional E-value: 0.02 DUF759 196 kdkekkglldgmkgferdlekeeflnqasvfkgtlrdld 234 +ke++ +l k d++ke l sv kg+ rdl T276642_2 2061 INKETHLVLSVTKASSCDINKETHLVLLSVTKGSSRDLS 2099 5789999999***************************96 PP == domain 5 score: 0.1 bits; conditional E-value: 0.032 DUF759 198 kekk.glldgmkgferdlekeeflnqasvfkgtlrd 232 ke++ ll k rd++ke l sv k + rd T276642_2 2303 KETHlDLLSVTKASSRDINKETHLVLLSVTKSSSRD 2338 221112334555555666666666555665555555 PP == domain 6 score: 2.3 bits; conditional E-value: 0.0071 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l sv kg+ rd+ T276642_2 2526 TVLLSVTKGGSRDINKETHLVLLSVTKGSSRDIS 2559 4578889************************986 PP >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.13 1e+03 89 119 .. 1350 1382 .. 1347 1384 .. 0.77 2 ? 4.8 0.0 0.00056 4.5 92 147 .. 1541 1594 .. 1531 1609 .. 0.67 3 ? -1.2 0.0 0.036 2.9e+02 91 129 .. 1930 1968 .. 1923 1976 .. 0.85 4 ? -1.3 0.0 0.039 3.2e+02 90 124 .. 2260 2294 .. 2255 2302 .. 0.87 5 ? -1.8 0.0 0.055 4.5e+02 89 123 .. 2316 2349 .. 2309 2357 .. 0.71 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.13 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvv 119 s rdi++et ++ll ++ s+ ++e+++y + T276642_2 1350 SSRDINKETHLVLLSVTKGSSRdiSKETQSYLL 1382 579***********9996555534777888866 PP == domain 2 score: 4.8 bits; conditional E-value: 0.00056 Raffinose_syn 92 dieaetqflllesksesdgedeqkvyvvllPlleGsfraslqggekdeveiclesG 147 di++etqf+ll + s + ++++ vll + Gs r q e + v++ + G T276642_2 1541 DINKETQFVLLSVIKGSPRDINKETQSVLLSVTKGSSRDISQ--ETHLVLLSVTKG 1594 777777777777777777777777777777777777776543..333444444444 PP == domain 3 score: -1.2 bits; conditional E-value: 0.036 Raffinose_syn 91 rdieaetqflllesksesdgedeqkvyvvllPlleGsfr 129 di++et ++ll ++ s+ + +++++ vll + + s r T276642_2 1930 CDINKETHLVLLSVTKASSCDINKETHLVLLSVTNASSR 1968 49*************99999*********9998887766 PP == domain 4 score: -1.3 bits; conditional E-value: 0.039 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPll 124 r i++etq++ll ++ s+ + +++++ vll + T276642_2 2260 SRGINKETQLVLLSFTKASSRDINKESHLVLLSVT 2294 5789************99999*******9999765 PP == domain 5 score: -1.8 bits; conditional E-value: 0.055 Raffinose_syn 89 sGrdieaetqflllesksesdgedeqkvyvvllPl 123 s rdi++et ++ll ++ s+ + ++++ +l l T276642_2 2316 SSRDINKETHLVLLSVTKSSSRDINKETQSFFL-L 2349 679***********9997776655554444333.3 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.56u 0.42s 00:00:01.98 Elapsed: 00:00:00.72 # Mc/sec: 19223.19 // Query: T276642_3 [L=4838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.35s 00:00:01.96 Elapsed: 00:00:00.88 # Mc/sec: 15728.06 // Query: T358912_1 [L=5175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-12 45.3 5.4 1.6e-05 24.8 2.2 3.4 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.5 0.0 0.0087 1.4e+02 19 60 .. 3157 3198 .. 3130 3223 .. 0.40 2 ! 24.8 2.2 9.9e-10 1.6e-05 4 65 .. 3227 3288 .. 3225 3290 .. 0.95 3 ! 16.4 0.5 4.1e-07 0.0067 10 64 .. 3293 3347 .. 3290 3350 .. 0.78 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.0087 Pentapeptide_4 19 searlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 s+++l + ++++ ls+ +++ +ls ++ + l+ +s T358912_1 3157 SSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSS 3198 222222222222222222222222222222222222222222 PP == domain 2 score: 24.8 bits; conditional E-value: 9.9e-10 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 +++++ +c+ls +++s++ l ++++ +++ls+v+ + c+ls+v ++ + l+r+++s+c l++ T358912_1 3227 SSVTLSACCLSSMTLSACGLSSTTLFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSS 3288 6899******************************************************9986 PP == domain 3 score: 16.4 bits; conditional E-value: 4.1e-07 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 +c ls+v++s+++l + + + + ls++++ c ls+ ++ ++l+++++s++ l+ T358912_1 3293 ACGLSRVTLSACHLSSMTVSTCGLSSMTLFACGLSSMTLSACRLSNVTLSNFPLA 3347 5778888888888888888888888888888888888888888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.76u 0.46s 00:00:02.22 Elapsed: 00:00:00.85 # Mc/sec: 17417.41 // Query: T358912_2 [L=5175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.38s 00:00:02.15 Elapsed: 00:00:00.85 # Mc/sec: 17417.41 // Query: T358912_3 [L=5174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.42s 00:00:02.11 Elapsed: 00:00:00.79 # Mc/sec: 18736.63 // Query: T367907_1 [L=3311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-20 73.2 2.1 1.3e-19 69.9 0.1 2.8 2 CD225 Interferon-induced transmembrane protein Domain annotation for each model (and alignments): >> CD225 Interferon-induced transmembrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.9 0.1 8.1e-24 1.3e-19 2 66 .. 192 256 .. 191 258 .. 0.97 2 ? 1.7 0.3 0.016 2.6e+02 4 25 .. 1828 1855 .. 1827 1856 .. 0.91 Alignments for each domain: == domain 1 score: 69.9 bits; conditional E-value: 8.1e-24 CD225 2 pkdylvwsifntlfcclplGivAivySvksrdrkavGdlegAqsasstAkilniialvlgillii 66 pkdy++ s+++tlfccl++G++AivyS+++r + +Gdl++A++as++A+ l ++l++g+++ + T367907_1 192 PKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLFGVFVST 256 99***********************************************************9875 PP == domain 2 score: 1.7 bits; conditional E-value: 0.016 CD225 4 dylvwsifntlf........cclplGivAi 25 ++lv s+f+++f cc G+ A+ T367907_1 1828 SHLVASLFTFFFffetesrsCCP--GWSAM 1855 59**********99*****9999..99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.65 # Mc/sec: 14572.63 // Query: T367907_2 [L=3311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 495 (0.0303569); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:00.68 # Mc/sec: 13929.72 // Query: T367907_3 [L=3311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.76 # Mc/sec: 12463.43 // Query: T091415_1 [L=3279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.5 0.0 0.062 13.0 0.0 1.7 1 Haemolytic Haemolytic domain Domain annotation for each model (and alignments): >> Haemolytic Haemolytic domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 3.8e-06 0.062 34 59 .. 1993 2018 .. 1990 2022 .. 0.92 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 3.8e-06 Haemolytic 34 aiekyGllkGlllalkRilrCnplsk 59 ai++ G ++G++la R+lrC+ + + T091415_1 1993 AIQRAGHWAGTFLAPTRVLRCRRWVP 2018 9*********************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 14000.99 // Query: T091415_2 [L=3279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.72 # Mc/sec: 13028.70 // Query: T091415_3 [L=3278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.77 # Mc/sec: 12178.96 // Query: T310786_1 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1002 (0.0614498); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 8249.38 // Query: T310786_2 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 8855.95 // Query: T310786_3 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-148 494.7 27.5 7e-122 406.7 12.0 2.1 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.14 10.3 4.9 0.21 9.8 4.9 1.1 1 DUF4613 Domain of unknown function (DUF4613) 0.34 10.6 11.9 0.73 9.5 11.9 1.5 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.9 7.5 1.4e-30 7.8e-27 1 90 [. 1292 1383 .. 1292 1388 .. 0.95 2 ! 406.7 12.0 1.3e-125 7e-122 140 368 .] 1397 1627 .. 1391 1627 .. 0.98 Alignments for each domain: == domain 1 score: 93.9 bits; conditional E-value: 1.4e-30 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ nrk++nsk +++s+P+ke+sssPa e++++++df++lr+e++++++y+el+e+i++k ke+e ++k++ee ntek+lk T310786_3 1292 MGKKQ---NRKTGNSKNQSASPPPKERSSSPAM--EQSWMENDFDKLREEGFRRSNYSELQEDIQTKRKEVEnFEKNLEEcitritNTEKCLK 1379 79***...*************************..*********************************************************9 PP .... CS Transposase_22 87 iike 90 + e T310786_3 1380 ELME 1383 6554 PP == domain 2 score: 406.7 bits; conditional E-value: 1.3e-125 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 140 slssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 sl+sr+d+leervsa+ede++e++re+k+rekr+k+ eqslq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++anv+iq T310786_3 1397 SLRSRCDQLEERVSAMEDEMNEMKREGKFREKRIKRSEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQ 1489 9******************************************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHHHTT---EEETTTEEEEES CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilkekkfqPrllyPaklsiii 324 ei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvtlkGkPirltadlsaetl+arre ++++ilkek+fqPr++yPakls+i+ T310786_3 1490 EIQRRPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLSAETLQARRE*G-PIFNILKEKNFQPRISYPAKLSFIS 1581 ***************************************************************9554.9************************ PP SSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 325 dGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 + eik+f dk++lrd+++trPalk+llke ++er+++yq+l++++ T310786_3 1582 EREIKYFTDKQMLRDFVTTRPALKELLKEelNMERNNQYQPLQNHA 1627 *****************************9**************96 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 4.9 3.9e-05 0.21 501 593 .. 1273 1386 .. 1261 1388 .. 0.69 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 3.9e-05 DUF4613 501 plssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkknlekekeaeqlskelerl 574 +++sv + +++ + ++++++ +++++++ +s s+++ +++++sp +e +++ +k ke+e+++k+le+ T310786_3 1273 KNPSVHHHHQRPTVDKTTKMGKKQNRKTGNSKNQ---SASPPPKERSSSPAMEqswmendfdklreegfrrsnyselQEDIQTKRKEVENFEKNLEEC 1367 4445444444445555555555555444444333...3444444444444444556777888999999999999998999999*************** PP DUF4613 575 sekltevqqsLseltdllq 593 ++++t+ +++L el++l++ T310786_3 1368 ITRITNTEKCLKELMELKT 1386 ***************9875 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 11.9 0.00014 0.73 76 160 .. 1320 1438 .. 1294 1447 .. 0.75 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00014 IncA 76 e.......................srlqeelselesrlaeleeeleqleerlaeleaelkdleedles...lqeelksvesrlesleesikelakeir 147 + s+lqe+++ ++++ e+ le+ +r+ +e++lk+l e +++ l+ee +s++sr++ lee++++++ e+ T310786_3 1320 AmeqswmendfdklreegfrrsnySELQEDIQTKRKEVENFEKNLEECITRITNTEKCLKELMELKTKa*eLHEECRSLRSRCDQLEERVSAMEDEMN 1417 2555566666666666788888889999999999999999999999999999999999999999999644367999*********************9 PP IncA 148 elr........elsdlkeevq 160 e+ ++++++ +q T310786_3 1418 EMKregkfrekRIKRSEQSLQ 1438 999544443333333333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 953 (0.0584447); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 8363.95 // Query: T125923_1 [L=1871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 7988.97 // Query: T125923_2 [L=1871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 8234.79 // Query: T125923_3 [L=1870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.62 # Mc/sec: 8628.63 // Query: T002707_1 [L=3496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.65 # Mc/sec: 15386.86 // Query: T002707_2 [L=3496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.72 # Mc/sec: 13890.92 // Query: T002707_3 [L=3496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.71 # Mc/sec: 14086.57 // Query: T088778_1 [L=489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2371.09 // Query: T088778_2 [L=488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.64 # Mc/sec: 2181.38 // Query: T088778_3 [L=488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.68 # Mc/sec: 2053.07 // Query: T381503_1 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6338.22 // Query: T381503_2 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 7208.17 // Query: T381503_3 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7069.55 // Query: T358909_1 [L=4653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.27s 00:00:01.44 Elapsed: 00:00:00.57 # Mc/sec: 22950.76 // Query: T358909_2 [L=4653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-12 45.7 5.4 1.4e-05 24.9 2.2 3.4 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.7 0.0 0.0077 1.3e+02 19 60 .. 2635 2676 .. 2608 2701 .. 0.40 2 ! 24.9 2.2 8.8e-10 1.4e-05 4 65 .. 2705 2766 .. 2703 2768 .. 0.95 3 ! 16.6 0.5 3.6e-07 0.0059 10 64 .. 2771 2825 .. 2768 2828 .. 0.78 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.0077 Pentapeptide_4 19 searlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 s+++l + ++++ ls+ +++ +ls ++ + l+ +s T358909_2 2635 SSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSS 2676 222222222222222222222222222222222222222222 PP == domain 2 score: 24.9 bits; conditional E-value: 8.8e-10 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 +++++ +c+ls +++s++ l ++++ +++ls+v+ + c+ls+v ++ + l+r+++s+c l++ T358909_2 2705 SSVTLSACCLSSMTLSACGLSSTTLFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSS 2766 6899******************************************************9986 PP == domain 3 score: 16.6 bits; conditional E-value: 3.6e-07 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 +c ls+v++s+++l + + + + ls++++ c ls+ ++ ++l+++++s++ l+ T358909_2 2771 ACGLSRVTLSACHLSSMTVSTCGLSSMTLFACGLSSMTLSACRLSNVTLSNFPLA 2825 5778888888888888888888888888888888888888888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.27s 00:00:01.45 Elapsed: 00:00:00.57 # Mc/sec: 22950.76 // Query: T358909_3 [L=4653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.30s 00:00:01.52 Elapsed: 00:00:00.62 # Mc/sec: 21470.07 // Query: T369039_1 [L=1211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6415.68 // Query: T369039_2 [L=1210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6410.38 // Query: T369039_3 [L=1210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6410.38 // Query: T052629_1 [L=1803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 8893.24 // Query: T052629_2 [L=1803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 8893.24 // Query: T052629_3 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 9205.74 // Query: T138213_1 [L=7909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.38s 00:00:02.16 Elapsed: 00:00:00.67 # Mc/sec: 33770.60 // Query: T138213_2 [L=7908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.41s 00:00:02.45 Elapsed: 00:00:00.75 # Mc/sec: 30164.59 // Query: T138213_3 [L=7908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.36s 00:00:02.15 Elapsed: 00:00:00.71 # Mc/sec: 31864.01 // Query: T263537_1 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1068 (0.0654974); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 6622.82 // Query: T263537_2 [L=1388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1712 (0.104992); expected 326.1 (0.02) Passed bias filter: 756 (0.0463633); expected 326.1 (0.02) Passed Vit filter: 673 (0.0412732); expected 16.3 (0.001) Passed Fwd filter: 78 (0.00478352); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.52u 0.61s 00:00:05.13 Elapsed: 00:00:01.33 # Mc/sec: 2985.59 // Query: T263537_3 [L=1388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 874 (0.0535999); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 5839.46 // Query: T381605_1 [L=3944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.64 # Mc/sec: 17629.86 // Query: T381605_2 [L=3944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.71 # Mc/sec: 15891.71 // Query: T381605_3 [L=3944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 16352.34 // Query: T138458_1 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 6188.65 // Query: T138458_2 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.41s 00:00:02.09 Elapsed: 00:00:00.96 # Mc/sec: 4383.63 // Query: T138458_3 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1779 (0.109101); expected 326.1 (0.02) Passed bias filter: 969 (0.059426); expected 326.1 (0.02) Passed Vit filter: 880 (0.0539679); expected 16.3 (0.001) Passed Fwd filter: 88 (0.00539679); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.64u 0.60s 00:00:05.23 Elapsed: 00:00:01.20 # Mc/sec: 3506.90 // Query: T227177_1 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.41s 00:00:01.53 Elapsed: 00:00:00.70 # Mc/sec: 9297.70 // Query: T227177_2 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.73 # Mc/sec: 8911.68 // Query: T227177_3 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.46s 00:00:01.69 Elapsed: 00:00:00.77 # Mc/sec: 8448.74 // Query: T157216_1 [L=2612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.40s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 10097.96 // Query: T157216_2 [L=2612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.68 # Mc/sec: 10988.95 // Query: T157216_3 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 10825.55 // Query: T194237_1 [L=5885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.28u 0.47s 00:00:02.75 Elapsed: 00:00:00.88 # Mc/sec: 19131.80 // Query: T194237_2 [L=5885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.40s 00:00:02.18 Elapsed: 00:00:00.76 # Mc/sec: 22152.61 // Query: T194237_3 [L=5884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.37s 00:00:02.16 Elapsed: 00:00:00.87 # Mc/sec: 19348.42 // Query: T256961_1 [L=1066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00013 21.7 2.5 0.00013 21.7 2.5 2.0 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 3.5 7.3 7.9 0.87 9.2 2.1 2.6 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 2.5 1.6e-08 0.00013 2 16 .. 857 871 .. 856 872 .. 0.95 2 ? -1.4 0.1 0.33 2.7e+03 11 17 .. 888 894 .. 888 895 .. 0.89 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 1.6e-08 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +Cy+C++ GH+a++C T256961_1 857 ACYKCQKSGHQAKEC 871 7************** PP == domain 2 score: -1.4 bits; conditional E-value: 0.33 STTTTST CS zf-CCHC 11 HiardCp 17 H++ dCp T256961_1 888 HWKLDCP 894 9999**9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 2.1 0.00011 0.87 1 18 [. 854 871 .. 854 873 .. 0.96 2 ? 0.2 0.4 0.07 5.7e+02 11 18 .. 886 893 .. 883 896 .. 0.88 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00011 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k H a++C T256961_1 854 PPGACYKCQKSGHQAKEC 871 89**************** PP == domain 2 score: 0.2 bits; conditional E-value: 0.07 SBS-TTT- CS zf-CCHC_5 11 gkHwardC 18 g Hw+ dC T256961_1 886 GPHWKLDC 893 78****** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 5754.05 // Query: T256961_2 [L=1066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 13.9 0.0 0.041 13.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 2.5e-06 0.041 138 181 .. 744 787 .. 737 787 .. 0.94 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2.5e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ l + r++t dp+ + + + + fi+qsa++i+ T256961_2 744 KNPAQFMAPLAATLRHFTALDPKRSKGRLILKIHFITQSAPNIK 787 68***************************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 6223.76 // Query: T256961_3 [L=1065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.69 # Mc/sec: 4415.63 // Query: T004820_1 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3419.15 // Query: T004820_2 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 101 (0.00619404); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 3419.15 // Query: T004820_3 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 3207.60 // Query: T196273_1 [L=4082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.80 # Mc/sec: 14597.39 // Query: T196273_2 [L=4082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.70 # Mc/sec: 16682.73 // Query: T196273_3 [L=4082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.38s 00:00:01.93 Elapsed: 00:00:00.82 # Mc/sec: 14241.35 // Query: T361770_1 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.80 # Mc/sec: 10731.69 // Query: T361770_2 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-24 85.7 5.8 1.1e-23 84.1 5.8 1.8 1 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.1 5.8 6.6e-28 1.1e-23 2 210 .. 261 468 .. 260 478 .. 0.86 Alignments for each domain: == domain 1 score: 84.1 bits; conditional E-value: 6.6e-28 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361770_2 261 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 353 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkrsgpsssplsspassrsqtperpakkvreeegqsssssaslksdkesqeekaaetptgkkqnsrsssptsgssrprKRK....ipLlp.... 192 +g+ l +++p + l+ p ++s pe++a kv + + +ss+ l+ +k++q++ a +++ + r ++ s r rKRK + p T361770_2 354 GGI-LLFGKPDPVPTVLPAPVPGCSLWPEKAALKVLGKD-HLPSSPGLLMVGKDMQPKDPAALGSSRSSPPR--ATGYRSHRSRKRKllgpL---Pqlqp 446 ***.7799***************************7777.89***************999988666666454..556667777777754442...12445 PP POM121 193 .......srrgeqltLPpppqlGys 210 ++r+e Ppp++l++ T361770_2 447 tpplqlrWDRDE---PPPPAKLPCL 468 9999999*****...6999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 11006.86 // Query: T361770_3 [L=3000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.82 # Mc/sec: 10466.45 // Query: T159812_1 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.79 # Mc/sec: 10320.72 // Query: T159812_2 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.71 # Mc/sec: 11483.61 // Query: T159812_3 [L=2849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.76 # Mc/sec: 10724.35 // Query: T126175_1 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.65 # Mc/sec: 6267.42 // Query: T126175_2 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 6172.46 // Query: T126175_3 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.78 # Mc/sec: 5219.18 // Query: T166772_1 [L=1938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.75 # Mc/sec: 7392.38 // Query: T166772_2 [L=1937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00065 19.2 0.0 0.001 18.6 0.0 1.3 1 ubiquitin Ubiquitin family Domain annotation for each model (and alignments): >> ubiquitin Ubiquitin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 6.3e-08 0.001 11 69 .. 268 325 .. 257 328 .. 0.90 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 6.3e-08 EEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBTGGHTTSTTEEEEEEE CS ubiquitin 11 itleveesdtveelKekiaekegipadqqrLiykGkvLedertleeygiqdgstihlvl 69 ++l+v + dt+++l +++ +g+ + ++y+ ++L+d++t+++ +qdgs++ lv T166772_2 268 LPLTVRPRDTLSDLRAQLV-GQGVSSWKRAFYYNARRLDDHQTVRDARLQDGSVLLLVS 325 578999***********98.789999999**************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 7488.42 // Query: T166772_3 [L=1937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.66 # Mc/sec: 8396.10 // Query: T257637_1 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.74 # Mc/sec: 12212.65 // Query: T257637_2 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.76 # Mc/sec: 11891.27 // Query: T257637_3 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.77 # Mc/sec: 11736.83 // Query: T148459_1 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 4558.87 // Query: T148459_2 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 4156.62 // Query: T148459_3 [L=987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.69 # Mc/sec: 4092.23 // Query: T258340_1 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 11.3 3.8 0.36 10.5 2.9 1.7 1 DUF4573 Domain of unknown function (DUF4573) Domain annotation for each model (and alignments): >> DUF4573 Domain of unknown function (DUF4573) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 2.9 2.2e-05 0.36 39 135 .. 583 679 .. 567 686 .. 0.83 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 2.2e-05 DUF4573 39 kdleavteveplkgnaeiePlkaeskiqPlravserdplkaveeieppqaasemkPlktaeniepleaarelqPqeavgkieqsqlvetipkeness 135 l+ + ++ l+++ + l+++ + lr++ + l+ + + ++++ +m l+t+ ++ l+++ ++ q+++ + ++ + t+p + + T258340_1 583 TMLRIRYTMPRLRTRYTMPRLRTRYTMPRLRTRYTMPRLRTRYTMPRLRTRYTMPRLRTRYTMPRLRTRYTMPRQRTRYTMPRLRTRYTMPRLRTRY 679 5566677788899999999999999999999999999999999999999999999999999999999999999999999999999999999887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 6470.52 // Query: T258340_2 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-05 23.2 24.6 0.00079 19.1 12.7 3.1 3 DUF4573 Domain of unknown function (DUF4573) Domain annotation for each model (and alignments): >> DUF4573 Domain of unknown function (DUF4573) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 1.5 2.1e-05 0.35 29 167 .. 685 819 .. 676 826 .. 0.78 2 ? -0.9 0.2 0.069 1.1e+03 119 169 .. 848 898 .. 810 904 .. 0.60 3 ! 19.1 12.7 4.9e-08 0.00079 31 173 .. 918 1062 .. 891 1063 .. 0.92 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 2.1e-05 DUF4573 29 ddpleaeekkkdleavteveplkgnaeiePlkaeskiqPlravserdplkaveeieppqaasemkPlktaeniepleaarelqPqeavgkieqsqlveti 128 d+ +ae + +a +++ + +i+ +ae++ q +a +e + +a +i+ a +++ + +i +a +++ ea +i+ + + ++i T258340_2 685 DQIHYAEAEDQIHYAEDQIHYAEAEDQIH--YAEAEDQIHYAEAEDQIHYAEDQIHYAEAEDQIHYAEAEDQI--HYAEDQIHYAEAEDQIHYAEVEDQI 780 33334444444456667777777777777..666666666888888888999999999999999999999999..5899999999999999999999999 PP DUF4573 129 pkenesseilegsqevetaeevqlieplgeveqiqplet 167 + ++ +i ++ +++ ae+ i+ + + qi+ e T258340_2 781 HYAEAEDQIHYAEDQIHYAEAEDQIHYVEVEDQIHHAEV 819 999999999999999999999999999999999987765 PP == domain 2 score: -0.9 bits; conditional E-value: 0.069 DUF4573 119 ieqsqlvetipkenesseilegsqevetaeevqlieplgeveqiqpletvp 169 ++ ++ ++i+ + +i ++ +++ ae i+ ++ qi+ e+ T258340_2 848 DQIHYAEDQIHYAEVEDQIHYAEDQIHHAEVEDQIHYAEAEDQIHHAEAED 898 444456666777777777777777777777777777777777777666544 PP == domain 3 score: 19.1 bits; conditional E-value: 4.9e-08 DUF4573 31 pleaeekkkdleavteveplkgnaeiePlkaeskiqPlravserdplkaveeieppqaasemkPlktaeniepleaarelqPqeavgkieqsqlveti 128 eae+++ ++ea +++ + +i+ ++ae +i+ a +++ a +i++ a ++ + +i+ ea +++ ea +i+ + + ++i T258340_2 918 YAEAEDQIHHAEAEDQIHHAEAEDQIHHAEAEDQIHHAEAEDQIHHAEAEDQIHHAEAEDHIHHAEAEDQIHHAEAEDQIHHAEAEDQIHHAEVEDQI 1015 45688999****************************************************************************************** PP DUF4573 129 pkenessei..legsqevetaeevqlieplgeveqiqpletvpkene 173 + + +i +e+ +++ ae+ i+ + qi++l + +ne T258340_2 1016 HHAEVEDQIhyAEAEDQIHYAEAEDQIHHAEVEDQIHLLPVFRAMNE 1062 ***************************************99988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.79 # Mc/sec: 5569.57 // Query: T258340_3 [L=1538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0053 16.5 13.4 0.03 14.0 12.1 2.4 2 DUF4573 Domain of unknown function (DUF4573) ------ inclusion threshold ------ 0.48 10.5 43.2 2.2 8.3 3.6 4.5 4 Flot Flotillin Domain annotation for each model (and alignments): >> DUF4573 Domain of unknown function (DUF4573) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 12.1 3.7e-06 0.03 2 168 .. 518 684 .. 514 690 .. 0.85 2 ? -1.1 0.0 0.16 1.3e+03 77 131 .. 912 966 .. 890 983 .. 0.61 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 3.7e-06 DUF4573 2 idpsrpteeiqPlegvkeieppqpggkddpleaeekkkdleavteveplkgnaeiePlkaeskiqPlravserdplkaveeieppqaasemkPlktaeni 101 i++ + +i+ e+ +i+ + +++ eae+++ +ea +++ + +i+ +ae +++ +a + + a +i++ a +++ + +i T258340_3 518 IHHAEAEDQIHYAEAEDQIHYAEAEDQIHYAEAEDQIHYAEAEDQIHYTEAEDQIH--HAEVEYHIHYAEDQVHHAEAEDQIHHAEAEDQIHHAEAEDQI 615 67777788888889999999999999999999999999888888888777777777..888888888999999999999999999999999999999999 PP DUF4573 102 epleaarelqPqeavgkieqsqlvetipkenessei..legsqevetaeevqlieplgeveqiqpletv 168 + ea +++ ea + + + + ++++ ++ ++ +e+ +v+ ae+ ++ ++ qi+ e++ T258340_3 616 HHAEAEDQVHHAEAEDQVHHAEAEDQVHHAEAEDQVhhAEAEDQVHHAEAEDQVHHAEAEDQIHHAEAR 684 999999999999999999999999999999999999999999999999999999999999999887776 PP == domain 2 score: -1.1 bits; conditional E-value: 0.16 DUF4573 77 lkaveeieppqaasemkPlktaeniepleaarelqPqeavgkieqsqlvetipke 131 l+ + + ++++ +m l+t+ ++ l+++ + ++++ + ++++ t+ T258340_3 912 LRTRYPMLRLRTRYTMLRLRTRYTMLRLRTRYTMLRLRTRYTMLRLRIRYTMLRL 966 4555555556666666666666666666666666666666555555555555444 PP >> Flot Flotillin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 2.1 0.003 25 7 37 .. 515 545 .. 510 547 .. 0.80 2 ? 8.3 3.6 0.00028 2.2 4 46 .. 539 581 .. 538 588 .. 0.89 3 ? 5.8 11.4 0.0017 14 4 47 .. 591 634 .. 583 639 .. 0.79 4 ? 4.4 11.9 0.0045 37 12 47 .. 635 670 .. 626 698 .. 0.54 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.003 Flot 7 daakleAeAkrakaeaeAegiralnEAenal 37 + + AeA+ ++ aeAe + +EAe+++ T258340_3 515 EDQIHHAEAEDQIHYAEAEDQIHYAEAEDQI 545 5566789999999999999999999999876 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00028 Flot 4 aeAdaakleAeAkrakaeaeAegiralnEAenalseeqialqv 46 aeA+ + AeA+ ++ aeAe + +EAe+++ ++++ ++ T258340_3 539 AEAEDQIHYAEAEDQIHYAEAEDQIHYTEAEDQIHHAEVEYHI 581 789999999************************9999887766 PP == domain 3 score: 5.8 bits; conditional E-value: 0.0017 Flot 4 aeAdaakleAeAkrakaeaeAegiralnEAenalseeqialqvk 47 aeA+ + AeA+ ++ aeAe + +EAe+++ ++ + qv T258340_3 591 AEAEDQIHHAEAEDQIHHAEAEDQIHHAEAEDQVHHAEAEDQVH 634 77888888888888888888888888888888888887777765 PP == domain 4 score: 4.4 bits; conditional E-value: 0.0045 Flot 12 eAeAkrakaeaeAegiralnEAenalseeqialqvk 47 AeA+ + aeAe + +EAe+++ ++ + qv T258340_3 635 HAEAEDQVHHAEAEDQVHHAEAEDQVHHAEAEDQVH 670 444444444444444444444444444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 714 (0.0437876); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 6027.34 // Query: T353195_1 [L=1865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 8605.56 // Query: T353195_2 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 9522.48 // Query: T353195_3 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 9038.28 // Query: T212566_1 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.60 # Mc/sec: 11414.71 // Query: T212566_2 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.26s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 11227.59 // Query: T212566_3 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 11227.59 // Query: T316859_1 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2494 (0.15295); expected 326.1 (0.02) Passed bias filter: 303 (0.0185821); expected 326.1 (0.02) Passed Vit filter: 104 (0.00637802); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.44s 00:00:01.97 Elapsed: 00:00:00.70 # Mc/sec: 4405.68 // Query: T316859_2 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.6 6.4 9.9 40 4.2 0.4 4.3 4 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.1 0.032 5.3e+02 18 36 .. 176 194 .. 174 194 .. 0.87 2 ? 0.5 0.0 0.036 5.8e+02 18 36 .. 250 268 .. 247 268 .. 0.88 3 ? 3.3 0.2 0.0046 74 19 36 .. 294 311 .. 291 311 .. 0.90 4 ? 4.2 0.4 0.0024 40 16 36 .. 396 415 .. 395 429 .. 0.82 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.032 HTH_Mga 18 eksltldelakeLglselt 36 ++ l l++++++L+++++t T316859_2 176 RPKLMLTHIKTQLRTTSKT 194 778899***********97 PP == domain 2 score: 0.5 bits; conditional E-value: 0.036 HTH_Mga 18 eksltldelakeLglselt 36 ++ lt ++++++L+++++t T316859_2 250 RPKLTFTHIKTQLRTTSKT 268 6789999**********97 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0046 HTH_Mga 19 ksltldelakeLglselt 36 + ltl++++++L+++++t T316859_2 294 PKLTLTHIKTQLHTTSKT 311 679*************98 PP == domain 4 score: 4.2 bits; conditional E-value: 0.0024 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316859_2 396 Q-RPKLTLTHIKTQLRTTSKT 415 5.789**************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2173 (0.133264); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.68 # Mc/sec: 4535.26 // Query: T316859_3 [L=1077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2476 (0.151846); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 108 (0.00662333); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.69 # Mc/sec: 4465.38 // Query: T091373_1 [L=5314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 625 (0.0383294); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.42s 00:00:02.16 Elapsed: 00:00:00.76 # Mc/sec: 20003.22 // Query: T091373_2 [L=5314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 651 (0.039924); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.70 # Mc/sec: 21717.79 // Query: T091373_3 [L=5314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 516 (0.0316448); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.40s 00:00:02.22 Elapsed: 00:00:00.95 # Mc/sec: 16002.58 // Query: T235858_1 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.74 # Mc/sec: 12502.60 // Query: T235858_2 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.81 # Mc/sec: 11422.13 // Query: T235858_3 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.77 # Mc/sec: 12015.49 // Query: T044342_1 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 9962.15 // Query: T044342_2 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 8951.50 // Query: T044342_3 [L=2158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 9078.93 // Query: T228188_1 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 3415.12 // Query: T228188_2 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.68 # Mc/sec: 3210.02 // Query: T228188_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.64 # Mc/sec: 3410.65 // Query: T099422_1 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 7609.81 // Query: T099422_2 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 6869.97 // Query: T099422_3 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 7274.08 // Query: T259413_1 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1647 (0.101006); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 102 (0.00625537); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.78 # Mc/sec: 7284.11 // Query: T259413_2 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1248 (0.0765362); expected 326.1 (0.02) Passed bias filter: 293 (0.0179688); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.77 # Mc/sec: 7378.71 // Query: T259413_3 [L=1985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1766 (0.108304); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 107 (0.006562); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.46s 00:00:02.05 Elapsed: 00:00:00.82 # Mc/sec: 6925.30 // Query: T217365_1 [L=5180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1436 (0.0880657); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.46s 00:00:03.29 Elapsed: 00:00:00.90 # Mc/sec: 16465.67 // Query: T217365_2 [L=5180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1283 (0.0786827); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.42s 00:00:02.86 Elapsed: 00:00:00.85 # Mc/sec: 17434.23 // Query: T217365_3 [L=5180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1037 (0.0635962); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.46s 00:00:02.65 Elapsed: 00:00:00.85 # Mc/sec: 17434.23 // Query: T245953_1 [L=1284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00036 20.4 0.3 0.00062 19.6 0.3 1.4 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.3 3.8e-08 0.00062 2 60 .. 169 232 .. 168 238 .. 0.81 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 3.8e-08 HHHHHHHHHHHHHHC.CT---SCHHHHHHHHHHH.....HHSSSCT-TT-S--CHHHHHHHHHT CS HTH_Tnp_Tc5 2 pelEkaLleWirqlrergapitgelirekAqela.....slaadpkepdfkaSkgWldrFkkRh 60 + +Ek+Ll Wi++++ +++p+ +++i kA+ l+ + ++ e++ a+ + rFk+R T245953_1 169 ALMEKVLLVWIEDQISHNIPLIQSQIWSKALTLFssleaEIGEKAAEEQLAANRDQFMRFKERG 232 679******************************9988776666677777777777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 5651.24 // Query: T245953_2 [L=1284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 6122.18 // Query: T245953_3 [L=1284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00089 18.7 0.4 0.0023 17.4 0.4 1.7 1 CENP-B_N CENP-B N-terminal DNA-binding domain Domain annotation for each model (and alignments): >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.4 1.4e-07 0.0023 1 52 [. 98 149 .. 98 150 .. 0.93 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 1.4e-07 SSSSSS--HHHHHHHHHHHHCTT-HHHHH.HHHT--CCHHHHHHHCHHHHCCH CS CENP-B_N 1 rkkRrsLTlreKievIqrleegeSkaela.rrfnvpestlsdilknKkkllke 52 rk+ sL l+ +e+I+ +e g+Ska+ + + ++++ + +s+++++K+kllke T245953_3 98 RKSYMSLILNKNLEMIKVSEKGMSKASTG*K-LGLLCQSVSQVVNAKEKLLKE 149 6777899999*****************9999.89*****************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 5031.93 // Query: T297827_1 [L=6203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.48s 00:00:02.46 Elapsed: 00:00:00.86 # Mc/sec: 20634.57 // Query: T297827_2 [L=6202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.43s 00:00:02.38 Elapsed: 00:00:00.93 # Mc/sec: 19078.35 // Query: T297827_3 [L=6202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00032 20.1 0.0 0.00053 19.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0094 15.3 0.0 0.017 14.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 6.5e-08 0.00053 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 6.5e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297827_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.0 2.1e-06 0.017 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 2.1e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297827_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.87u 0.44s 00:00:02.31 Elapsed: 00:00:00.83 # Mc/sec: 21376.95 // Query: T326333_1 [L=375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 2063.10 // Query: T326333_2 [L=375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 1730.34 // Query: T326333_3 [L=374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.26 10.5 5.6 0.35 10.1 5.6 1.1 1 APG6 Autophagy protein Apg6 0.31 10.7 7.3 0.44 10.2 7.3 1.2 1 IncA IncA protein 0.33 10.8 6.4 0.51 10.2 6.4 1.2 1 OmpH Outer membrane protein (OmpH-like) 0.81 10.2 3.6 1.2 9.7 3.6 1.2 1 DUF972 Protein of unknown function (DUF972) Domain annotation for each model (and alignments): >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 5.6 8.7e-05 0.35 52 124 .. 239 309 .. 215 319 .. 0.65 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 8.7e-05 APG6 52 ekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalklelaeleeerdslkaq 124 e +l+++ +e++e++++ +++e+e ++ ++ l+++e++l e+ ee+ + re +a + + ++l + ++++q T326333_3 239 EPSLDQVLQERDEAIAKKQAVEAELQRCKARLHAMEAQLLEVLEEKLRLRRELEAWEEDVQQLVWQ--QVQNQ 309 455666777777777777777777777777777777777777776666666666666555555432..23333 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 7.3 0.00011 0.44 69 123 .. 244 308 .. 214 318 .. 0.78 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00011 IncA 69 sedekiee.....srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq.....e 123 ++ ++ +e +++++el+ +++rl +e +l ++ e+ +l +el++ eed ++l T326333_3 244 QVLQERDEaiakkQAVEAELQRCKARLHAMEAQLLEVLEEKLRLRRELEAWEEDVQQLVwqqvqN 308 333333336666899999**************************************998653332 PP >> OmpH Outer membrane protein (OmpH-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 6.4 0.00013 0.51 40 105 .. 251 314 .. 213 320 .. 0.73 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00013 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS OmpH 40 qlekefkklqaeleakekelqkkqeelqkkakkl.ekeekeqelqkkeqelqakqqqkaqqelqkkq 105 + +++++ +ael++ ++ l +++++l + l ek + ++el++ e+++q++ q+ q++lq++ T326333_3 251 EAIAKKQAVEAELQRCKARLHAMEAQLL---EVLeEKLRLRRELEAWEEDVQQLVWQQVQNQLQREA 314 3335667888888888888888888887...444348899999999999999999888889999875 PP >> DUF972 Protein of unknown function (DUF972) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 3.6 0.00029 1.2 4 62 .. 250 308 .. 247 323 .. 0.72 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00029 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS DUF972 4 kelfdrleeleeqleelleeleelkeelaelleenaeLeleneklrerlekeekeekek 62 +e +++ +++e +l+++ ++l++++++l e+lee +L+ e e e +++ ++ ++ T326333_3 250 DEAIAKKQAVEAELQRCKARLHAMEAQLLEVLEEKLRLRRELEAWEEDVQQLVWQQVQN 308 5677788999*******************************776666663322222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 875 (0.0536612); expected 326.1 (0.02) Passed bias filter: 519 (0.0318288); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 1573.46 // Query: T293091_1 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 4025.24 // Query: T293091_2 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 3883.94 // Query: T293091_3 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4020.22 // Query: T258985_1 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 10474.45 // Query: T258985_2 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.73 # Mc/sec: 10761.42 // Query: T258985_3 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 6.7 6.6 9.8 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.0006 9.8 6 41 .. 1805 1840 .. 1791 1851 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0006 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258985_3 1805 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1840 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.41s 00:00:01.48 Elapsed: 00:00:00.68 # Mc/sec: 11552.70 // Query: T232524_1 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 2743.33 // Query: T232524_2 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 661 (0.0405372); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 2363.49 // Query: T232524_3 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 690 (0.0423157); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 3135.24 // Query: T352722_1 [L=2908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.055 13.2 3.1 30 4.9 0.1 6.3 3 LSPR Coagulation Factor V LSPD Repeat Domain annotation for each model (and alignments): >> LSPR Coagulation Factor V LSPD Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.1 0.0018 30 1 9 [] 2360 2368 .. 2360 2368 .. 0.93 2 ? 2.4 0.4 0.012 1.9e+02 3 9 .] 2539 2545 .. 2537 2545 .. 0.91 3 ? -0.8 0.0 0.14 2.3e+03 1 9 [] 2545 2553 .. 2545 2553 .. 0.93 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0018 LSPR 1 tLSPDLsQT 9 tLSPD +++ T352722_1 2360 TLSPDPGHV 2368 9******96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.012 LSPR 3 SPDLsQT 9 SPD +QT T352722_1 2539 SPDPGQT 2545 9*****9 PP == domain 3 score: -0.8 bits; conditional E-value: 0.14 LSPR 1 tLSPDLsQT 9 t SP L++T T352722_1 2545 TVSPNLGHT 2553 78******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.39s 00:00:01.70 Elapsed: 00:00:00.80 # Mc/sec: 10399.12 // Query: T352722_2 [L=2907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.52 10.0 5.5 4.9 6.9 0.4 4.0 3 Ephrin_rec_like Putative ephrin-receptor like Domain annotation for each model (and alignments): >> Ephrin_rec_like Putative ephrin-receptor like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.1 0.065 1.1e+03 10 16 .. 196 202 .. 191 208 .. 0.70 2 ? 6.9 0.4 0.0003 4.9 10 33 .. 250 273 .. 244 284 .. 0.87 3 ? 2.3 0.0 0.008 1.3e+02 13 34 .. 290 311 .. 289 322 .. 0.73 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.065 Ephrin_rec_like 10 tCipCpr 16 C+pCp+ T352722_2 196 ACSPCPH 202 4666665 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0003 Ephrin_rec_like 10 tCipCprgtYqneegqlsClaCPl 33 C+pCpr+ + ++ C++CP T352722_2 250 VCSPCPRHRVLTAGTRTVCSPCPH 273 5**********************5 PP == domain 3 score: 2.3 bits; conditional E-value: 0.008 Ephrin_rec_like 13 pCprgtYqneegqlsClaCPlg 34 pCpr+ + ++ C++CP+ T352722_2 290 PCPRHLVLTAGTRTVCSPCPRH 311 7777777778888889999954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:00.74 # Mc/sec: 11238.42 // Query: T352722_3 [L=2907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.65 # Mc/sec: 12794.51 // Query: T051129_1 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.66 # Mc/sec: 6337.17 // Query: T051129_2 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 6434.67 // Query: T051129_3 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 5890.89 // Query: T126465_1 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8868.57 // Query: T126465_2 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 7883.18 // Query: T126465_3 [L=1735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.72 # Mc/sec: 6893.81 // Query: T353222_1 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 10820.96 // Query: T353222_2 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-06 27.1 6.1 1.3e-05 25.7 6.1 1.8 1 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 6.1 7.7e-10 1.3e-05 1 77 [] 950 1026 .. 950 1026 .. 0.88 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 7.7e-10 EEEEEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTT..EEEEEEEEEEESCCGGCCCCCCSTSECEEEEEEEESSTTTT CS UPAR_LY6 1 CysClge.ssesClpeveCpeadsvCvsatlklqagn..lettlvvkgCaresscrlladfinigsikvsesccqsdlcn 77 Cy Cl + + sC+ +Cp+ d+vCvs+++++ ++ e++l +C ++ +ll + ++ +++ ++scc++dlcn T353222_2 950 CYRCLAVlEGASCSVV-SCPFLDGVCVSQKVSVFGSKvrGENKLSLLSCQKDVGFPLL--KLTSAVVDSQISCCKGDLCN 1026 ****************.***************99988444567788899976666666..69999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 11009.09 // Query: T353222_3 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 10815.94 // Query: T148925_1 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7549.41 // Query: T148925_2 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7406.95 // Query: T148925_3 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 7544.11 // Query: T216717_1 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6352.10 // Query: T216717_2 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6596.41 // Query: T216717_3 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 6471.95 // Query: T316680_1 [L=1441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7634.18 // Query: T316680_2 [L=1441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7361.53 // Query: T316680_3 [L=1441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 7.7 6.4 4.6 7.1 6.4 1.1 1 PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus Domain annotation for each model (and alignments): >> PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 6.4 0.00028 4.6 51 87 .. 238 274 .. 226 300 .. 0.77 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00028 PRP9_N 51 sdisknkiykskkskrsrkqillQqhEinlFledykk 87 ++ +++iyk+++ +r+++q Qq+ ++l+ ++ + T316680_3 238 AQKPSEDIYKNRRRRRQQQQQQQQQQQLDLLFHQRIQ 274 477899***********************98876543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 336 (0.0206059); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 7495.37 // Query: T089374_1 [L=2243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 11666.98 // Query: T089374_2 [L=2243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 11257.62 // Query: T089374_3 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 11877.74 // Query: T135184_1 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 1802.32 // Query: T135184_2 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 1553.73 // Query: T135184_3 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.60 # Mc/sec: 1501.94 // Query: T027832_1 [L=1252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 6070.78 // Query: T027832_2 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.67 # Mc/sec: 5341.64 // Query: T027832_3 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 5680.79 // Query: T358011_1 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.7 6.7 12.2 9.6 5.9 12.2 1.3 1 TFIIA Transcription factor IIA, alpha/beta subunit Domain annotation for each model (and alignments): >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 12.2 0.00059 9.6 146 269 .. 1311 1432 .. 1192 1481 .. 0.43 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00059 TFIIA 146 v..........qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqeq 232 + ++ ++ ++ ++q ++ q + ++++ +l+ ++qq+++ +++ + l+ ++ qq++++ +++ q ++sqq++++ + T358011_1 1311 TltthiqlthtPQHTKTHTLTTHIQLTHT-PQHKKIHTTHIQLTHTPQQTKTHTLTTHIqLT-----HTPQQTKTHTLTTHIQLTHTSQQTKTH---T 1399 11111111111111111111111111111.11111122222222222222222222221111.....111111111111111111111111111...0 PP TFIIA 233 lagsqvessqtdgaedaleeespvlegelsaeeeaga 269 l+ ++++ + t ++ + + + +l +++++++ T358011_1 1400 LT-THIQLTHTPQQTKTHTLT---THIQLTHTSQNTK 1432 11.111111111111000100...1111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 810 (0.049675); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.83 # Mc/sec: 6938.37 // Query: T358011_2 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 665 (0.0407825); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.76 # Mc/sec: 7577.44 // Query: T358011_3 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.79 # Mc/sec: 7289.68 // Query: T000081_1 [L=4066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-09 35.8 4.8 0.25 11.3 0.0 9.1 10 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.13 12.1 0.0 11 5.8 0.1 3.5 4 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 0.2 1.6e+03 64 64 .. 2408 2408 .. 2384 2452 .. 0.58 2 ! 4.9 0.0 0.0031 25 42 71 .. 2506 2536 .. 2478 2556 .. 0.54 3 ! 3.7 0.0 0.0076 62 46 74 .. 2510 2539 .. 2503 2575 .. 0.68 4 ? -0.1 0.0 0.11 9.3e+02 49 74 .. 2693 2719 .. 2667 2744 .. 0.58 5 ? -2.6 0.0 0.7 5.7e+03 52 69 .. 2826 2843 .. 2812 2854 .. 0.44 6 ! 11.3 0.0 3.1e-05 0.25 28 75 .. 2905 2955 .. 2900 2957 .. 0.90 7 ? -2.4 0.0 0.58 4.8e+03 44 73 .. 3065 3095 .. 3047 3098 .. 0.67 8 ? -1.3 0.0 0.27 2.2e+03 48 69 .. 3106 3127 .. 3104 3152 .. 0.68 9 ? 0.6 0.0 0.069 5.7e+02 46 75 .. 3241 3271 .. 3239 3273 .. 0.85 10 ! 7.7 0.0 0.00043 3.5 34 70 .. 3319 3355 .. 3304 3362 .. 0.65 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.2 Pentapeptide_4 64 k 64 + T000081_1 2408 N 2408 1 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0031 Pentapeptide_4 42 llsdvdfaeadlkrasFsgcdlknvnfsg.k 71 + + ++++++dl+ +++ g+d k+ +++g k T000081_1 2506 EWNGTEWNGMDLNGIEWNGMDSKEMKWNGfK 2536 2233444444444444444444444444444 PP == domain 3 score: 3.7 bits; conditional E-value: 0.0076 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkd 74 ++++++dl+ +++ g+d k+ +++g k+++ T000081_1 2510 TEWNGMDLNGIEWNGMDSKEMKWNGfKWNG 2539 556666666666666666666666555544 PP == domain 4 score: -0.1 bits; conditional E-value: 0.11 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.klkd 74 ++++++ +++ g+d ++ ++++ ++++ T000081_1 2693 NGMEWNGMEWNGMDSNGMEWNElQWNG 2719 444444444444444444443333332 PP == domain 5 score: -2.6 bits; conditional E-value: 0.7 Pentapeptide_4 52 dlkrasFsgcdlknvnfs 69 ++ + + g+ + + +++ T000081_1 2826 RWDGMGWDGMGWDGFEWN 2843 333333333333333332 PP == domain 6 score: 11.3 bits; conditional E-value: 3.1e-05 Pentapeptide_4 28 Fteanl..snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 ++e+++ + ++F+ + + d++++++kr+++ g+++++ +++g +l++ T000081_1 2905 MEETRMewNTMEFNGMDSNGMDLNGIEWKRLEWNGMQWNGLEWNGmELTQM 2955 678888888999*******************************98899975 PP == domain 7 score: -2.4 bits; conditional E-value: 0.58 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnfsg.klk 73 + +++++ +++ + g++l++ ++g l+ T000081_1 3065 NALEWNGLEWNGMDSNGMELNGLIWNGmALN 3095 5667777788888888888888777765565 PP == domain 8 score: -1.3 bits; conditional E-value: 0.27 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfs 69 ++e +++ +++ g+++++ +++ T000081_1 3106 WNEPEWNGMEWNGMEWNGMEWN 3127 5566666666666666666663 PP == domain 9 score: 0.6 bits; conditional E-value: 0.069 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkda 75 +++++++++r++ g+++++ ++++ +++++ T000081_1 3241 LEWNGMEWNRMESNGMTWNGFEWKDmEWTRL 3271 589999*****99999999999987688875 PP == domain 10 score: 7.7 bits; conditional E-value: 0.00043 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 + ++++ + + ++++++++r++++g+d ++++f+g T000081_1 3319 NRMEWNGMEWNGMEWNGMEWTRMEWKGMDSNGIEFNG 3355 4455555555666777777777777777777777777 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.55 4.5e+03 41 78 .. 2393 2430 .. 2387 2440 .. 0.75 2 ? -3.9 0.0 1.3 1.1e+04 37 71 .. 2684 2718 .. 2681 2720 .. 0.73 3 ? 5.8 0.1 0.0014 11 43 72 .. 2810 2839 .. 2808 2850 .. 0.63 4 ? 1.3 0.0 0.035 2.9e+02 42 77 .. 3061 3096 .. 3049 3105 .. 0.72 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.55 Lamprin 41 gglgygglgygglgvaglgvaglgygglgypgaalggv 78 g+ + g+ + g+ g+ g+ + l + g+ + g+ T000081_1 2393 NGMEWNGMEWSGMDPNGMERNGMEWNALEWNGTDMNGM 2430 57777888888888888888888888888888877664 PP == domain 2 score: -3.9 bits; conditional E-value: 1.3 Lamprin 37 ghpvgglgygglgygglgvaglgvaglgygglgyp 71 g + gl g+ + g+ + g+ g+ + l + T000081_1 2684 GTELNGLERNGMEWNGMEWNGMDSNGMEWNELQWN 2718 55667888888888888888888888877777665 PP == domain 3 score: 5.8 bits; conditional E-value: 0.0014 Lamprin 43 lgygglgygglgvaglgvaglgygglgypg 72 + + gl + g+g+ g+ g+g+ g+g+ g T000081_1 2810 MEWNGLEWNGMGWDGMRWDGMGWDGMGWDG 2839 555666666666666666666666666655 PP == domain 4 score: 1.3 bits; conditional E-value: 0.035 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaalgg 77 g+ l + gl + g+ g+ gl + g al g T000081_1 3061 GMDSNALEWNGLEWNGMDSNGMELNGLIWNGMALNG 3096 555566777777777777777777777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:00.68 # Mc/sec: 17106.08 // Query: T000081_2 [L=4066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-10 39.9 3.4 18 5.4 0.0 10.1 8 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.15 11.9 0.2 0.55 10.1 0.2 1.9 2 Lamprin Lamprin 1.3 8.8 4.7 2.9 7.7 4.7 1.5 1 Chorion_1 Chorion protein Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.011 61 48 71 .. 2390 2414 .. 2385 2421 .. 0.51 2 ? 2.2 0.0 0.034 1.9e+02 46 73 .. 2698 2726 .. 2692 2729 .. 0.79 3 ! 4.2 0.0 0.008 44 46 73 .. 2733 2761 .. 2730 2764 .. 0.87 4 ? -1.0 0.0 0.32 1.7e+03 34 62 .. 2776 2804 .. 2766 2815 .. 0.55 5 ! 3.9 0.0 0.0098 53 42 67 .. 2879 2904 .. 2831 2925 .. 0.55 6 ! 5.4 0.0 0.0034 18 46 70 .. 2973 2997 .. 2938 3032 .. 0.71 7 ? 3.0 0.0 0.019 1e+02 49 74 .. 3189 3215 .. 3185 3235 .. 0.57 8 ! 4.1 0.0 0.0088 48 46 74 .. 3319 3348 .. 3315 3350 .. 0.76 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.011 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfsg.k 71 +++++++ +++sg++++ +++g + T000081_2 2390 WNGMEWNGMEWSGVEWTRMEWNGtE 2414 4555555555555555555554433 PP == domain 2 score: 2.2 bits; conditional E-value: 0.034 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klk 73 ++++++++r+++ g++ ++ ++ + +++ T000081_2 2698 MEWNGMEWTRMEWNGMNSNGMEWTRiEWN 2726 57899999999999999999988765665 PP == domain 3 score: 4.2 bits; conditional E-value: 0.008 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klk 73 v +++++++r+ + g++++ ++++ +++ T000081_2 2733 VGWNGVEWTRMGWNGMEWTRMEWNRkEWN 2761 689********************774676 PP == domain 4 score: -1.0 bits; conditional E-value: 0.32 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcd 62 + ++++ + + ++ +++r++++g+d T000081_2 2776 NGMEWNGMQWNRMGWNVLEWTRMAWTGVD 2804 44445555555555555555555555555 PP == domain 5 score: 3.9 bits; conditional E-value: 0.0098 Pentapeptide_4 42 llsdvdfaeadlkrasFsgcdlknvn 67 + ++++++ ++++ + g+dl++++ T000081_2 2879 EWNELEWNTMEFNGMDSNGMDLNGIE 2904 22223333333333333333333333 PP == domain 6 score: 5.4 bits; conditional E-value: 0.0034 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 +++++++++r++++++++++ +++g T000081_2 2973 LEWNGMEWTRMEWTAMEWTQMEWNG 2997 4555566666666666666655554 PP == domain 7 score: 3.0 bits; conditional E-value: 0.019 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.klkd 74 ++++ +r++++++++++ +++g ++++ T000081_2 3189 NGMQCTRMEWTRMEWNELEWNGmEWTR 3215 455555555555555555554434433 PP == domain 8 score: 4.1 bits; conditional E-value: 0.0088 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkd 74 ++++++++ +++ g+++++ +++g ++++ T000081_2 3319 IEWNGMEWNGMEWNGMEWNGLEWNGkEWTQ 3348 578888888888888888888888755765 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.2 0.0001 0.55 46 78 .. 2811 2843 .. 2799 2855 .. 0.66 2 ? -4.0 0.0 2.2 1.2e+04 44 62 .. 3265 3283 .. 3259 3286 .. 0.52 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.0001 Lamprin 46 gglgygglgvaglgvaglgygglgypgaalggv 78 g+ g+g+ g+g g+g+ g+g+ g l g+ T000081_2 2811 NGMVSSGMGWDGMGCDGMGWDGMGWDGMDLNGI 2843 555566666666666666666666666666554 PP == domain 2 score: -4.0 bits; conditional E-value: 2.2 Lamprin 44 gygglgygglgvaglgvag 62 + gl + glg+ l g T000081_2 3265 TWNGLDWNGLGWNDLECNG 3283 4445555555555544444 PP >> Chorion_1 Chorion protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 4.7 0.00054 2.9 27 56 .. 2815 2844 .. 2810 2855 .. 0.77 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00054 Chorion_1 27 gglrgafdGfGydglgydGlGy.GlngrGfg 56 + + ++dG+G+dg+g+dG+G+ G++ +G+ T000081_2 2815 SS-GMGWDGMGCDGMGWDGMGWdGMDLNGIE 2844 44.557*************999898877764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.70 # Mc/sec: 16617.34 // Query: T000081_3 [L=4065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00068 18.8 0.0 0.00096 18.3 0.0 1.1 1 Septin Septin ------ inclusion threshold ------ 0.29 10.9 4.2 1.1e+02 2.5 0.0 6.1 8 Lamprin Lamprin Domain annotation for each model (and alignments): >> Septin Septin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 1.2e-07 0.00096 5 49 .. 104 146 .. 101 146 .. 0.90 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 1.2e-07 EEEEEEEBTTSSCCCCCCTTSSSS-------------------S- CS Septin 5 ftlmvvGesglGkttlintlfetdlieeeekleeaseekkktvei 49 f l++ G+sglGk tlin+lf tdl++ +++ +s+++kk v++ T000081_3 104 FPLFLLGKSGLGKLTLINSLFLTDLYSP--EYPGPSQRIKKPVQV 146 77999*********************99..589999999998875 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.31 2.5e+03 37 57 .. 2625 2645 .. 2597 2663 .. 0.49 2 ? 0.2 0.0 0.073 5.9e+02 42 76 .. 2725 2759 .. 2724 2768 .. 0.71 3 ? 0.3 0.0 0.067 5.5e+02 48 69 .. 2816 2837 .. 2804 2839 .. 0.56 4 ? -0.4 0.0 0.11 9.2e+02 44 74 .. 2847 2877 .. 2844 2887 .. 0.49 5 ? 2.5 0.0 0.014 1.1e+02 42 73 .. 2965 2996 .. 2950 3012 .. 0.65 6 ? -1.4 0.3 0.23 1.8e+03 46 67 .. 3143 3163 .. 3136 3164 .. 0.63 7 ? -3.3 0.0 0.88 7.2e+03 48 72 .. 3194 3218 .. 3185 3221 .. 0.58 8 ? -1.4 0.0 0.23 1.9e+03 41 72 .. 3305 3336 .. 3296 3347 .. 0.53 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.31 Lamprin 37 ghpvgglgygglgygglgvag 57 g g+ + g+ + g+ ++g T000081_3 2625 GMDSNGMWWDGFKWNGMELSG 2645 222223333333333333333 PP == domain 2 score: 0.2 bits; conditional E-value: 0.073 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaalg 76 g+ + gl + g+ + gl g+ + gl + g+ T000081_3 2725 GMEWKGLEWDGMEWNGLEWDGMEWNGLEWNGTERN 2759 56677777777777888777877777777776544 PP == domain 3 score: 0.3 bits; conditional E-value: 0.067 Lamprin 48 lgygglgvaglgvaglgygglg 69 + + g+g+ +g g+g+ g+g T000081_3 2816 VEWDGMGWDAMGWDGMGWDGMG 2837 4455555555555555555555 PP == domain 4 score: -0.4 bits; conditional E-value: 0.11 Lamprin 44 gygglgygglgvaglgvaglgygglgypgaa 74 + g+ + g+ gl gl + g+ g+ T000081_3 2847 EWNGMEWNGIDSKGLEWNGLEWNGMDMNGTE 2877 4444444555555555555555554444443 PP == domain 5 score: 2.5 bits; conditional E-value: 0.014 Lamprin 42 glgygglgygglgvaglgvaglgygglgypga 73 g+ y g+ g+ + gl gl + gl + g T000081_3 2965 GMEYNGMVSNGMEWNGLEWNGLQWNGLKWNGM 2996 55555666666666666666666666655554 PP == domain 6 score: -1.4 bits; conditional E-value: 0.23 Lamprin 46 gglgygglgvaglgvaglgygg 67 g+ y g+g+ g+g+ g+g+ g T000081_3 3143 NGMEYNGMGM-GMGMEGMGWDG 3163 4566666665.56666666655 PP == domain 7 score: -3.3 bits; conditional E-value: 0.88 Lamprin 48 lgygglgvaglgvaglgygglgypg 72 l + gl + g+ g+ + gl + g T000081_3 3194 LEWNGLEWNGMNSNGMEWNGLEWNG 3218 5555666666666666666665554 PP == domain 8 score: -1.4 bits; conditional E-value: 0.23 Lamprin 41 gglgygglgygglgvaglgvaglgygglgypg 72 + + gl + g+ g+ g+ + g+ + g T000081_3 3305 ARMEWNGLEWNGMESNGMEWNGMEWNGMEWNG 3336 44445555555555555555555555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.65 # Mc/sec: 17891.19 // Query: T258472_1 [L=3214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 795 (0.0487551); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.36s 00:00:01.97 Elapsed: 00:00:00.90 # Mc/sec: 10216.34 // Query: T258472_2 [L=3213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1007 (0.0617564); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.43s 00:00:02.10 Elapsed: 00:00:00.77 # Mc/sec: 11937.46 // Query: T258472_3 [L=3213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1124 (0.0689317); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.45s 00:00:02.60 Elapsed: 00:00:00.88 # Mc/sec: 10445.28 // Query: T294565_1 [L=4141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1451 (0.0889856); expected 326.1 (0.02) Passed bias filter: 695 (0.0426223); expected 326.1 (0.02) Passed Vit filter: 259 (0.0158837); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.83u 0.55s 00:00:04.38 Elapsed: 00:00:01.00 # Mc/sec: 11846.70 // Query: T294565_2 [L=4141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.46 10.6 9.4 1.2 9.3 9.4 1.6 1 DUF2956 Protein of unknown function (DUF2956) Domain annotation for each model (and alignments): >> DUF2956 Protein of unknown function (DUF2956) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 9.4 7.2e-05 1.2 40 97 .. 1460 1519 .. 1450 1521 .. 0.64 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 7.2e-05 DUF2956 40 kkqqkekaReadkarkkqlkkkek.eeeeeeeeeseeetevekak.llpwlLLvlsWlgf 97 +k+ ke++R+++k rkk+ kk++k e+++e+++e ++ ++++ + l+p++ + sW+g+ T294565_2 1460 RKEGKERERDRQKGRKKERKKERKkERKKERKKERKKGKQFSFFQiLIPLIFFLSSWIGW 1519 56778888888888888884444403444444444455555554415789999999*997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1130 (0.0692996); expected 326.1 (0.02) Passed bias filter: 528 (0.0323807); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.07u 0.46s 00:00:03.53 Elapsed: 00:00:00.88 # Mc/sec: 13462.16 // Query: T294565_3 [L=4140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.65 9.3 1.4 1 8.7 1.4 1.2 1 DUF4366 Domain of unknown function (DUF4366) Domain annotation for each model (and alignments): >> DUF4366 Domain of unknown function (DUF4366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 1.4 6.3e-05 1 127 183 .. 1443 1501 .. 1437 1533 .. 0.49 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 6.3e-05 DUF4366 127 evcsctekceagavn.....aanmsectgkete..peaeptaepksseeeekekkkekgasgll 183 +++ c++k + g++ +++ et +e +++ +++ ++e +ke kke +++++l T294565_3 1443 QEKICQKKKKKGRRRkegrkG-----KKERETDrkEERKKERKKERKKERKKERKKERKENNFL 1501 55669*******999666431.....33333331111222222223334444444433333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1210 (0.0742058); expected 326.1 (0.02) Passed bias filter: 535 (0.03281); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.31u 0.41s 00:00:03.72 Elapsed: 00:00:01.05 # Mc/sec: 11279.84 // Query: T226937_1 [L=9426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.74u 0.47s 00:00:03.21 Elapsed: 00:00:00.89 # Mc/sec: 30299.08 // Query: T226937_2 [L=9426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.46u 0.46s 00:00:02.92 Elapsed: 00:00:00.98 # Mc/sec: 27516.51 // Query: T226937_3 [L=9425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.56u 0.50s 00:00:03.06 Elapsed: 00:00:00.92 # Mc/sec: 29307.96 // Query: T324433_1 [L=1586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.64 # Mc/sec: 7089.49 // Query: T324433_2 [L=1586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 6980.43 // Query: T324433_3 [L=1586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 6672.47 // Query: T346736_1 [L=2258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.64 # Mc/sec: 10093.37 // Query: T346736_2 [L=2258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-64 216.0 8.9 2.2e-57 194.5 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.5 5.4 1.3e-61 2.2e-57 179 299 .. 1235 1355 .. 1226 1363 .. 0.94 2 ! 22.9 0.1 1.9e-09 3.1e-05 340 367 .. 1398 1427 .. 1396 1428 .. 0.96 Alignments for each domain: == domain 1 score: 194.5 bits; conditional E-value: 1.3e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346736_2 1235 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1327 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346736_2 1328 GKVNHKWKPIRLTADLSAETLQARREWG 1355 ***************************8 PP == domain 2 score: 22.9 bits; conditional E-value: 1.9e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346736_2 1398 FVTTRPALQELLKEapNMERKNRYQPLQKH 1427 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.77 # Mc/sec: 8389.29 // Query: T346736_3 [L=2258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-35 121.1 1.9 7.3e-35 120.3 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 6e-14 51.5 14.6 2.9e-07 29.6 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.028 14.2 0.1 0.064 13.0 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.3 1.9 1.3e-38 7.3e-35 31 210 .. 1839 2031 .. 1830 2049 .. 0.93 Alignments for each domain: == domain 1 score: 120.3 bits; conditional E-value: 1.3e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346736_3 1839 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1936 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346736_3 1937 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 2031 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.6 2.9 5.3e-11 2.9e-07 6 83 .. 1090 1175 .. 1085 1187 .. 0.79 2 ! 27.5 3.9 2.3e-10 1.2e-06 145 182 .. 1201 1238 .. 1201 1242 .. 0.96 Alignments for each domain: == domain 1 score: 29.6 bits; conditional E-value: 5.3e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346736_3 1090 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 1175 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.5 bits; conditional E-value: 2.3e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346736_3 1201 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1238 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.1 1.2e-05 0.064 24 48 .. 1158 1182 .. 1156 1185 .. 0.91 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.2e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346736_3 1158 KLYQRLQELLSRIASLEKNVNDLME 1182 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 882 (0.0540905); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.81 # Mc/sec: 7975.01 // Query: T374803_1 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 2068.24 // Query: T374803_2 [L=440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 2736.45 // Query: T374803_3 [L=440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-05 22.2 0.5 9.9e-05 21.5 0.5 1.2 1 NPIP Nuclear pore complex interacting protein (NPIP) Domain annotation for each model (and alignments): >> NPIP Nuclear pore complex interacting protein (NPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.5 6e-09 9.9e-05 147 194 .. 72 119 .. 59 121 .. 0.88 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 6e-09 NPIP 147 eenGkldmkeirtykkmfqraqelrrraedsyrckitpsarkalcnrv 194 +n ++ + + + +km+++++e ++ ed+yrc+i+ s rka +n++ T374803_3 72 RNNTRFSLMKCLSIRKMMEDTEEQQNWVEDYYRCQIATSERKAYDNWL 119 67888888899999********************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 2288.66 // Query: T023331_1 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.66 # Mc/sec: 11803.09 // Query: T023331_2 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.65 # Mc/sec: 11984.68 // Query: T023331_3 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.70 # Mc/sec: 11124.54 // Query: T227450_1 [L=2099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.67 # Mc/sec: 8962.51 // Query: T227450_2 [L=2099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 8225.87 // Query: T227450_3 [L=2098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 9680.68 // Query: T226523_1 [L=3127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.67 # Mc/sec: 13351.96 // Query: T226523_2 [L=3127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.75 # Mc/sec: 11927.75 // Query: T226523_3 [L=3126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:00.73 # Mc/sec: 12250.62 // Query: T300740_1 [L=1193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-09 36.1 0.7 8.8e-09 35.2 0.7 1.4 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.6e-06 27.3 4.4 6e-06 26.1 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.7 1.1e-12 8.8e-09 2 62 .. 687 748 .. 686 751 .. 0.86 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 1.1e-12 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300740_1 687 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 748 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 4.4 7.4e-10 6e-06 10 82 .. 602 674 .. 589 681 .. 0.54 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 7.4e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300740_1 602 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 674 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 5595.03 // Query: T300740_2 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 5412.87 // Query: T300740_3 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.6 5.9 0.056 13.4 5.9 1.7 1 Mucin-like Mucin-like 8.3 5.4 8.4 13 4.7 8.4 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 5.9 6.9e-06 0.056 7 87 .. 509 589 .. 501 593 .. 0.85 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 6.9e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300740_3 509 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 589 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 8.4 0.0016 13 242 305 .. 531 589 .. 505 603 .. 0.62 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0016 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300740_3 531 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 589 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 5328.30 // Query: T138136_1 [L=3721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 14385.34 // Query: T138136_2 [L=3721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:00.84 # Mc/sec: 12672.80 // Query: T138136_3 [L=3721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.41s 00:00:01.94 Elapsed: 00:00:00.82 # Mc/sec: 12981.89 // Query: T065984_1 [L=2603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00031 20.2 0.0 0.00049 19.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3e-08 0.00049 152 210 .. 924 982 .. 907 983 .. 0.91 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065984_1 924 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 982 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.43s 00:00:01.57 Elapsed: 00:00:00.82 # Mc/sec: 9081.39 // Query: T065984_2 [L=2603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-16 58.2 0.0 1.1e-15 57.6 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.11 12.7 0.0 0.98 9.6 0.0 2.2 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.6 0.0 1.3e-19 1.1e-15 3 155 .. 775 926 .. 773 929 .. 0.85 Alignments for each domain: == domain 1 score: 57.6 bits; conditional E-value: 1.3e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065984_2 775 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 870 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065984_2 871 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 926 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.11 8.7e+02 3 28 .. 1110 1135 .. 1108 1145 .. 0.82 2 ? 9.6 0.0 0.00012 0.98 65 98 .. 1166 1199 .. 1152 1202 .. 0.80 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.11 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065984_2 1110 EEPWVTLDIMATQIQFLCDTKVNYSV 1135 689*****************766665 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00012 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065984_2 1166 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 1199 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.19u 0.32s 00:00:01.51 Elapsed: 00:00:00.82 # Mc/sec: 9081.39 // Query: T065984_3 [L=2602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-17 62.4 0.0 7.9e-17 61.7 0.0 1.3 1 RNase_H RNase H 1.8e-05 24.8 0.0 3e-05 24.1 0.0 1.3 1 rve Integrase core domain ------ inclusion threshold ------ 0.031 13.7 0.1 0.081 12.3 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.7 0.0 1.5e-20 7.9e-17 8 135 .. 1722 1852 .. 1718 1858 .. 0.87 Alignments for each domain: == domain 1 score: 61.7 bits; conditional E-value: 1.5e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065984_3 1722 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1813 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065984_3 1814 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1852 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 0.0 5.5e-09 3e-05 55 116 .. 2027 2087 .. 2024 2087 .. 0.89 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 5.5e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065984_3 2027 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 2087 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 1.5e-05 0.081 126 221 .. 1375 1462 .. 1339 1463 .. 0.81 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.5e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065984_3 1375 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1461 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065984_3 1462 V 1462 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.79 # Mc/sec: 9422.63 // Query: T052991_1 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 8.0 32.2 0.25 11.2 7.7 3.6 3 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 7.4 0.2 3.3e+03 42 67 .. 870 895 .. 865 897 .. 0.43 2 ? 11.2 7.7 1.5e-05 0.25 43 74 .. 906 937 .. 903 940 .. 0.82 3 ? 10.0 1.7 3.5e-05 0.56 48 72 .. 946 970 .. 942 978 .. 0.54 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.2 Lamprin 42 glgygglg.ygglgvaglgvaglgygg 67 glg+gg g g g aglg aglg g T052991_1 870 GLGWGGQG*A-GQGRAGLGWAGLGRAG 895 4444433221.2345555555555444 PP == domain 2 score: 11.2 bits; conditional E-value: 1.5e-05 Lamprin 43 lgygglgygglgvaglgvaglgygglgypgaa 74 lg+ glg glg ag g aglg+ glg g T052991_1 906 LGWAGLGRSGLGRAGQGRAGLGWAGLGRAGQG 937 89999999999999999999999999988764 PP == domain 3 score: 10.0 bits; conditional E-value: 3.5e-05 Lamprin 48 lgygglgvaglgvaglgygglgypg 72 lg+ glg aglg +gl + glg g T052991_1 946 LGWAGLGRAGLGWTGLDWAGLGRAG 970 4445555555555555555544433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 13993.40 // Query: T052991_2 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 13993.40 // Query: T052991_3 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.6 7.4 28.4 0.072 12.9 3.6 3.6 2 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 3.6 4.4e-06 0.072 41 74 .. 865 898 .. 845 903 .. 0.70 2 ? -5.9 16.9 1 1.6e+04 42 72 .. 926 941 .. 905 977 .. 0.47 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 4.4e-06 Lamprin 41 gglgygglgygglgvaglgvaglgygglgypgaa 74 g lg+ glg+ gl +ag g aglg g g g + T052991_3 865 GMLGWAGLGWAGLSWAGQGRAGLGRAGQGRAGLS 898 5677777777777777777777777777666644 PP == domain 2 score: -5.9 bits; conditional E-value: 1 Lamprin 42 glgygglgygglgvaglgvaglgygglgypg 72 glg+ g g glg + g T052991_3 926 GLGWAGQGRTGLG---------------WVG 941 2222222222222...............222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 14238.90 // Query: T063374_1 [L=316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 1738.50 // Query: T063374_2 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 1668.82 // Query: T063374_3 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 1733.00 // Query: T258954_1 [L=2066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.5 8.2 5.7 0.81 9.7 1.5 2.3 2 DUF678 Protein of unknown function (DUF678) Domain annotation for each model (and alignments): >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 1.5 5e-05 0.81 20 65 .. 1416 1460 .. 1406 1467 .. 0.83 2 ? -2.4 0.1 0.3 4.9e+03 12 35 .. 1494 1518 .. 1491 1521 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 5e-05 DUF678 20 ededdctTCSlCqSkLvkvsdvskvslsklkvavgkgntlrCaACg 65 e + +c+ CS+C L +++ ++k + + ++ + + tl+C+ C T258954_1 1416 ETNAHCLRCSVCGILLWQLKLIQKQKQT-INKGAEAAVTLSCSKCS 1460 44589*****************998865.555569**********6 PP == domain 2 score: -2.4 bits; conditional E-value: 0.3 DUF678 12 krkpkttvededdc.tTCSlCqSkL 35 kr+ k+tv++ ++ T C+ kL T258954_1 1494 KRQEKATVQKGKASlRTRLRCDTKL 1518 8999*****9977646778888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 10554.42 // Query: T258954_2 [L=2065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00062 18.6 0.0 0.00099 17.9 0.0 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 6e-08 0.00099 314 343 .. 1831 1860 .. 1804 1883 .. 0.85 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 6e-08 EETTTEEEEESSSSEEEESSHHHHHHHHTT CS Transposase_22 314 llyPaklsiiidGeikvfidktklrdylst 343 +ly kls+ ++Geik f dk+klr+ l + T258954_2 1831 ILYTVKLSLRSEGEIKTFSDKQKLRNVLPV 1860 89***********************98865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.60 # Mc/sec: 9846.02 // Query: T258954_3 [L=2065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 10012.91 // Query: T260051_1 [L=997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 5185.90 // Query: T260051_2 [L=997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 419 (0.0256961); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 5093.30 // Query: T260051_3 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 4998.92 // Query: T368945_1 [L=1655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 8306.44 // Query: T368945_2 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 7169.41 // Query: T368945_3 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 8762.62 // Query: T234002_1 [L=9985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.06u 0.48s 00:00:03.54 Elapsed: 00:00:01.03 # Mc/sec: 27733.39 // Query: T234002_2 [L=9984] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9984 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.87u 0.53s 00:00:04.40 Elapsed: 00:00:01.07 # Mc/sec: 26693.95 // Query: T234002_3 [L=9984] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9984 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.93u 0.48s 00:00:03.41 Elapsed: 00:00:01.05 # Mc/sec: 27202.41 // Query: T376189_1 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-176 585.5 18.5 7.5e-176 585.5 18.5 1.7 2 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.5 0.23 3.7e+03 339 368 .. 333 362 .. 332 398 .. 0.80 2 ! 585.5 18.5 4.6e-180 7.5e-176 1 439 [. 792 1213 .. 792 1216 .. 0.98 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.23 DUF4641 339 pvpkaqlpthrpgppclsvhrgEfssGdln 368 p++ +q+p+ p p+++ + + ssG+l T376189_1 333 PGLTVQVPACSPPPRSKPALQTDTSSGELM 362 677899999999999999999999999975 PP == domain 2 score: 585.5 bits; conditional E-value: 4.6e-180 DUF4641 1 egrpgspvddeedaldflsqladEaaaivqqlsdldargvrrnpspescaaelsa.lwadleagpsgRgalalssveskqasaaplhlsglergrawg 97 egrpg+pvdd+ ++ d++++ladE+a+i+++ s v+ +pspe+++a+ s+ +wadle+gps+Rgal++s++e++qasa+plhls+++ g+aw+ T376189_1 792 EGRPGTPVDDQAGGGDYSFYLADEPATIMPPSS------VQGHPSPEGATAKGSTdIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWE 883 8********************************......*********************************************************** PP DUF4641 98 npkrgtksrmvvsedvqrps.eeglvglpsdsessDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvv 194 np+rg+ksr+++++d+q+ps e+++ +++ds+s+DE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vv T376189_1 884 NPERGSKSRLSFQVDPQQPSaEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVV 981 ********************66667778899******************************************************************* PP DUF4641 195 erqavgElessssKKmqsvvwgkggsrPSypgatAaaaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLl 292 er+avgEl++ s KKmqs+vwgk+g+rPS++ga a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+Ll T376189_1 982 ERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA-----AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLL 1074 *********************************.....9*********************************************************** PP DUF4641 293 GkskkvsllpsgpkqskhtgtGKksvarktresqavakeDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlP 390 Gks + pk++kh+++GKk+++rktresqa+a+eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++P T376189_1 1075 GKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVP 1165 ***99.......************************************************************************************** PP DUF4641 391 RgpapSgdqeppvrpprpeeqqqppqGaqgCprcvvLqkeiddLkeqLa 439 R +a Sgd++ppv+pprpe+qqqpp GaqgCprc++Lq+ei+dL++qLa T376189_1 1166 RCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRCILLQREIEDLRDQLA 1213 ******************7777766.**********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 7016.56 // Query: T376189_2 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 7842.04 // Query: T376189_3 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 7016.56 // Query: T044791_1 [L=1172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 882 (0.0540905); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 5407.89 // Query: T044791_2 [L=1172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.7 6.1 6.0 3.7 7.1 0.8 2.3 2 Collagen_mid Bacterial collagen, middle region Domain annotation for each model (and alignments): >> Collagen_mid Bacterial collagen, middle region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.4 0.018 3e+02 71 156 .. 572 661 .. 550 699 .. 0.72 2 ? 7.1 0.8 0.00023 3.7 86 150 .. 886 953 .. 858 958 .. 0.75 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.018 Collagen_mid 71 aLgtgplaplapvttpvggvvstvgqa...vtsagttLtta.lssgpvqqltqqlssaitPitstvtgttqtvgtatglgapvngLLgtv 156 aL + l+ l+ + + + +++ ++ ++++ + L ++ + ++++ ++l+ a+t +t + t+ t+++ + t+ +p + L+++ T044791_2 572 ALTSHMLTHLTRILAHLTHTPTHISHThphISHVHSHLSHTsHTPTHLARAPTHLTCALTHLTRAPTNLTRALTHLTHAPTPHTCTLTHL 661 555666666666655555554444443111666666776541446788999999999999999999999999999999888887777665 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00023 Collagen_mid 86 pvggvvstvgqavtsag.ttLttals..sgpvqqltqqlssaitPitstvtgttqtvgtatglgapvn 150 ++ + s++ a+t++ t + t +s +++++ + ++l++a+t++t ++t+ t t + t+l+++++ T044791_2 886 HISHTHSHLTPALTHLTpTHMCTHIShmHSHISHVHTHLTHALTNLTHALTSHTYTHISHTHLTQALT 953 4555555555555544314566666655899********************************99986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 610 (0.0374095); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 5158.30 // Query: T044791_3 [L=1171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 749 (0.045934); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 5000.05 // Query: T052971_1 [L=7433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.41s 00:00:02.61 Elapsed: 00:00:01.03 # Mc/sec: 20645.19 // Query: T052971_2 [L=7433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.47s 00:00:02.63 Elapsed: 00:00:00.85 # Mc/sec: 25017.12 // Query: T052971_3 [L=7432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.49s 00:00:02.80 Elapsed: 00:00:00.98 # Mc/sec: 21695.60 // Query: T230008_1 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-27 94.5 8.2 7.8e-27 93.7 8.2 1.4 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 3.8 6.9 7.7 0.44 10.0 0.4 2.0 2 TMCO5 TMCO5 family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.7 8.2 9.5e-31 7.8e-27 51 121 .] 154 224 .. 143 224 .. 0.95 Alignments for each domain: == domain 1 score: 93.7 bits; conditional E-value: 9.5e-31 TMEM191C 51 galrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T230008_1 154 SPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 224 5689******************************************************************7 PP >> TMCO5 TMCO5 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 1.7 0.053 4.3e+02 101 135 .. 59 92 .. 53 103 .. 0.76 2 ? 10.0 0.4 5.3e-05 0.44 208 275 .] 159 223 .. 146 223 .. 0.83 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.053 TMCO5 101 nddleketlkqkleelkvklqkaeescaeqekela 135 +++ +++l +l +l+ +l+ ae ca+qe++l+ T230008_1 59 QKST-EQQLAAQLVTLQNELELAETKCALQEEKLQ 92 3333.347888888899999999999999999886 PP == domain 2 score: 10.0 bits; conditional E-value: 5.3e-05 TMCO5 208 fwkralrflffmvlifirLlgyvlfhlqyinpdllvevLPkilsRrtlweLReflfPfLtlevedlLP 275 ++ al++l+ l+f +L+ l++ ++p + L ++ s tl +LR l+P+L l+++ lLP T230008_1 159 CVLGALQVLLTLPLLFLGLS---LLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLP 223 46778888888888888886...3444468***9999******************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.76 # Mc/sec: 3655.09 // Query: T230008_2 [L=971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-12 47.0 0.1 4.8e-12 45.9 0.1 1.4 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 0.1 2.9e-16 4.8e-12 16 53 .. 113 150 .. 111 155 .. 0.93 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 2.9e-16 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagal 53 cd+qlr vq++++slmee+arad+e+rlfgg++a a+ T230008_2 113 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAI 150 59********************************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.76 # Mc/sec: 3655.09 // Query: T230008_3 [L=970] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (970 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.76 # Mc/sec: 3651.32 // Query: T176635_1 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-06 28.2 25.8 0.00082 19.9 5.5 3.6 3 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.0 0.8 1.4e-05 0.23 16 58 .. 110 149 .. 102 171 .. 0.78 2 ! 6.7 4.8 0.00066 11 4 74 .. 190 266 .. 188 268 .. 0.73 3 ! 19.9 5.5 5e-08 0.00082 1 55 [. 287 341 .. 287 372 .. 0.90 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.4e-05 EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCCCCC CS UPAR_LY6 16 veCpeadsvCvsatlklqagnlettlvvkgCaresscrlladf 58 ++C+ +++ Cv+ + g+ + kgCa+ + c+l ++ T176635_1 110 MNCTGKQTACVTLHGTWSRGG---PQILKGCATPEVCNLHENA 149 79*************999665...99***********544433 PP == domain 2 score: 6.7 bits; conditional E-value: 0.00066 EEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTTEEE.EEEEEEEESCCGG......CCCCCCSTSECEEEEEEEESST CS UPAR_LY6 4 Clge.ssesClpeveCpeadsvCvsatlklqagnlet.tlvvkgCaressc......rlladfinigsikvsesccqsd 74 C +sC p Cpe++++C++ + g+ + + + C++++ c + l +++ + v+++ccq++ T176635_1 190 CFTC*DLHSCGPL-PCPEDNHYCLQMAGITGFGEGNPvSWRNGFCVTSKDCkfgnsiYALTYGVGF-GFCVNTTCCQGN 266 5555567899999.***********9998888885550555556*******998844334444433.467899***975 PP == domain 3 score: 19.9 bits; conditional E-value: 5e-08 EEEEEEBTTTBCCCC..EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCC CS UPAR_LY6 1 CysClgessesClpe..veCpeadsvCvsatlklqagnlettlvvkgCaresscrll 55 C++C g e C+++ ++Cp ++s Cv+ l+ ++g+ +++ v+gC c+ l T176635_1 287 CPTCPGSYLEPCNSSfyMQCPSGESECVQLDLTSEEGG--RNVNVRGCGSRDLCSAL 341 *************************************9..88999***999999544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 2648.31 // Query: T176635_2 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 2896.59 // Query: T176635_3 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 3370.58 // Query: T316854_1 [L=1452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1299 (0.0796639); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.81 # Mc/sec: 5128.30 // Query: T316854_2 [L=1451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.8 6.5 8.4 21 5.1 0.1 3.6 4 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.1 0.21 3.5e+03 23 36 .. 579 592 .. 578 592 .. 0.90 2 ? 5.1 0.1 0.0013 21 15 36 .. 646 666 .. 644 666 .. 0.91 3 ? 3.4 0.2 0.0045 73 16 36 .. 693 712 .. 692 712 .. 0.90 4 ? 0.8 0.0 0.028 4.5e+02 18 36 .. 740 758 .. 737 758 .. 0.88 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.21 HTH_Mga 23 ldelakeLglselt 36 l +++++L+++++t T316854_2 579 LAHIKTQLHTTSKT 592 679********997 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0013 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++++L+++++t T316854_2 646 TQ-RPKLTLTHIKTQLHTTSKT 666 66.999**************98 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0045 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316854_2 693 Q-RPKLTLTHVKTQLHTTSKT 712 5.789**************98 PP == domain 4 score: 0.8 bits; conditional E-value: 0.028 HTH_Mga 18 eksltldelakeLglselt 36 ++ lt ++++++L+++++t T316854_2 740 RPKLTFTHIKTQLHTTSKT 758 6789999**********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2020 (0.123881); expected 326.1 (0.02) Passed bias filter: 230 (0.0141052); expected 326.1 (0.02) Passed Vit filter: 124 (0.00760456); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.21u 0.56s 00:00:02.77 Elapsed: 00:00:00.92 # Mc/sec: 4512.03 // Query: T316854_3 [L=1451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1599 (0.0980621); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.49s 00:00:02.08 Elapsed: 00:00:00.90 # Mc/sec: 4612.29 // Query: T279965_1 [L=2046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 8361.80 // Query: T279965_2 [L=2046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.71 # Mc/sec: 8244.03 // Query: T279965_3 [L=2045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.73 # Mc/sec: 8014.24 // Query: T023335_1 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.76 # Mc/sec: 9824.69 // Query: T023335_2 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 10370.51 // Query: T023335_3 [L=2609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.76 # Mc/sec: 9820.93 // Query: T000051_1 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.80 # Mc/sec: 6283.10 // Query: T000051_2 [L=1756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 6977.25 // Query: T000051_3 [L=1756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.4 0.4 1.5e+02 2.4 0.0 4.9 6 RAMP4 Ribosome associated membrane protein RAMP4 Domain annotation for each model (and alignments): >> RAMP4 Ribosome associated membrane protein RAMP4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.15 2.5e+03 10 27 .. 5 22 .. 2 29 .. 0.78 2 ? -0.5 0.0 0.072 1.2e+03 5 27 .. 34 56 .. 31 64 .. 0.79 3 ? 0.5 0.0 0.036 5.9e+02 6 39 .. 69 102 .. 65 103 .. 0.83 4 ? 2.2 0.0 0.01 1.7e+02 6 39 .. 173 206 .. 169 207 .. 0.83 5 ? -1.1 0.0 0.11 1.8e+03 6 27 .. 277 298 .. 273 305 .. 0.78 6 ? 2.4 0.0 0.0094 1.5e+02 5 38 .. 310 343 .. 307 345 .. 0.83 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.15 RAMP4 10 nekFaknitkrGkvpksl 27 + +++ t+rG+v+++ T000051_3 5 TQHHTQGLTHRGHVNTTH 22 67788888******9986 PP == domain 2 score: -0.5 bits; conditional E-value: 0.072 RAMP4 5 emrrknekFaknitkrGkvpksl 27 e++ + + +++ t+rG+v ++ T000051_3 34 ELTPRTQHHTQGLTHRGHVDTTH 56 5666889999999******9986 PP == domain 3 score: 0.5 bits; conditional E-value: 0.036 RAMP4 6 mrrknekFaknitkrGkvpkslkkkekkspvgpw 39 ++ + + +++ +rG+v ++ + + + +pv p+ T000051_3 69 LTPRTQHHTQGLMHRGHVDTTHTFSHSTHPVTPM 102 5667888999999*******99988899999885 PP == domain 4 score: 2.2 bits; conditional E-value: 0.01 RAMP4 6 mrrknekFaknitkrGkvpkslkkkekkspvgpw 39 ++ + + +++ t+rG+v ++ + + + +pv p+ T000051_3 173 LTPRTQHHTRGLTHRGHVDTTHTFSHSTHPVTPM 206 566788899999*********9988899999885 PP == domain 5 score: -1.1 bits; conditional E-value: 0.11 RAMP4 6 mrrknekFaknitkrGkvpksl 27 ++ + + +++ t+rG+v+++ T000051_3 277 LTPRTQHHTRGLTHRGHVNTTH 298 566788899999******9986 PP == domain 6 score: 2.4 bits; conditional E-value: 0.0094 RAMP4 5 emrrknekFaknitkrGkvpkslkkkekkspvgp 38 e++ + + +++ t+rG+v ++ + + + +p+ p T000051_3 310 ELTPRTQHHTQGLTHRGHVDTTHTFSHSTHPITP 343 5666889999999********9998888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 7280.61 // Query: T373346_1 [L=3064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.76 # Mc/sec: 11533.66 // Query: T373346_2 [L=3063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.80 # Mc/sec: 10953.40 // Query: T373346_3 [L=3063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 12341.86 // Query: T023858_1 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-14 53.8 0.0 2.8e-14 53.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.2 0.0 1.7e-18 2.8e-14 2 118 .. 218 331 .. 217 332 .. 0.94 Alignments for each domain: == domain 1 score: 53.2 bits; conditional E-value: 1.7e-18 rve 2 trpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 ++p +wqvD+ +++ ++++++++l+ id++ ++ +a++ + +a+t+i+ l + + + +g p + sD+ + +ka+ ++ + +gi +s++ p+ T023858_1 218 NQPATWWQVDYIgPLP--SWKSQSFVLTGIDTYLGYGFAYPACNA-SAKTTIRGLMKCLTHHHGI-PNSIASDQRIHFMAKAVWQWSRAHGIYWSYHIPH 313 5899********7777..77778**********************.9999999999999999998.********************************** PP rve 101 rpqdnGkvErfnrtlkde 118 +p+ G++E n++lk + T023858_1 314 HPEAAGLIEWWNGLLKSQ 331 ***************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.63 # Mc/sec: 3905.26 // Query: T023858_2 [L=859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 3780.70 // Query: T023858_3 [L=859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-14 52.0 0.0 7.5e-14 51.4 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.4 0.0 4.6e-18 7.5e-14 7 106 .. 399 498 .. 394 517 .. 0.92 Alignments for each domain: == domain 1 score: 51.4 bits; conditional E-value: 4.6e-18 BESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC CS dUTPase 7 trkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt 106 + + sAg+++ ++ t++pg+t ++p+++++ lp + +l+lp S a+kg++v+ gvid dy+ e+++ l+n +k++ ++gd + +L++ ++ T023858_3 399 VPMTLHSAGLEVLVPGGGTLPPGDTRMIPLNRKLRLPPRHFGLLLPLSQQAKKGVTVLAGVIDPDYQDEISILLYNGGKEEYAWNTGDPLGHLLVLPCPM 498 5667789****************************************************************************************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 3839.77 // Query: T369076_1 [L=1607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.67 # Mc/sec: 6861.72 // Query: T369076_2 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 6961.35 // Query: T369076_3 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.76 # Mc/sec: 6045.39 // Query: T188381_1 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:00.86 # Mc/sec: 9058.19 // Query: T188381_2 [L=2723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 10250.05 // Query: T188381_3 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.59 # Mc/sec: 13198.61 // Query: T111296_1 [L=5561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:00.62 # Mc/sec: 25659.80 // Query: T111296_2 [L=5561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.67 # Mc/sec: 23744.89 // Query: T111296_3 [L=5561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.38s 00:00:01.83 Elapsed: 00:00:00.65 # Mc/sec: 24475.50 // Query: T139696_1 [L=426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 2299.46 // Query: T139696_2 [L=425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2251.58 // Query: T139696_3 [L=425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 2338.18 // Query: T353294_1 [L=3590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.59 # Mc/sec: 17407.42 // Query: T353294_2 [L=3590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.61 # Mc/sec: 16836.69 // Query: T353294_3 [L=3590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 16302.19 // Query: T277921_1 [L=1158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 5711.80 // Query: T277921_2 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5910.68 // Query: T277921_3 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 6129.59 // Query: T143993_1 [L=2498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 11526.38 // Query: T143993_2 [L=2498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.60 # Mc/sec: 11910.59 // Query: T143993_3 [L=2497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.60 # Mc/sec: 11905.82 // Query: T381500_1 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 5454.40 // Query: T381500_2 [L=1448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.78 # Mc/sec: 5310.87 // Query: T381500_3 [L=1448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 6003.60 // Query: T321207_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 7896.73 // Query: T321207_2 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.75 # Mc/sec: 7159.70 // Query: T321207_3 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.62 # Mc/sec: 8656.32 // Query: T001873_1 [L=5603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.43s 00:00:02.48 Elapsed: 00:00:00.83 # Mc/sec: 19312.33 // Query: T001873_2 [L=5603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 479 (0.0293757); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.51s 00:00:02.76 Elapsed: 00:00:00.93 # Mc/sec: 17235.73 // Query: T001873_3 [L=5602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.46s 00:00:02.44 Elapsed: 00:00:00.86 # Mc/sec: 18635.31 // Query: T280752_1 [L=5840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.37s 00:00:02.24 Elapsed: 00:00:00.81 # Mc/sec: 20626.23 // Query: T280752_2 [L=5840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:00.83 # Mc/sec: 20129.21 // Query: T280752_3 [L=5840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.41s 00:00:02.10 Elapsed: 00:00:00.77 # Mc/sec: 21697.72 // Query: T317464_1 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 3786.96 // Query: T317464_2 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3852.26 // Query: T317464_3 [L=780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 3719.08 // Query: T072048_1 [L=1216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.68 # Mc/sec: 5115.84 // Query: T072048_2 [L=1215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 5891.37 // Query: T072048_3 [L=1215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 5431.11 // Query: T027370_1 [L=313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 6.5 10.1 7.4 5.9 10.1 1.1 1 Circo_capsid Circovirus capsid protein Domain annotation for each model (and alignments): >> Circo_capsid Circovirus capsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 10.1 0.00045 7.4 4 43 .. 202 241 .. 199 268 .. 0.67 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00045 Circo_capsid 4 irrryrrprlRrrhlrrRyRrRRlrinRrrsrtnriytlr 43 +rr+ +++r+Rrr+ r +RrRR++ + ++r + t++ T027370_1 202 RRRKEEEKRRRRREKREGRRRRRKEEGEEGRRKTTTTTTK 241 4555556588888888866888888777776666455554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2306 (0.14142); expected 326.1 (0.02) Passed bias filter: 884 (0.0542132); expected 326.1 (0.02) Passed Vit filter: 547 (0.0335459); expected 16.3 (0.001) Passed Fwd filter: 243 (0.0149025); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.47u 0.51s 00:00:03.98 Elapsed: 00:00:01.02 # Mc/sec: 877.88 // Query: T027370_2 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3006 (0.184349); expected 326.1 (0.02) Passed bias filter: 821 (0.0503496); expected 326.1 (0.02) Passed Vit filter: 552 (0.0338526); expected 16.3 (0.001) Passed Fwd filter: 163 (0.00999632); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.54u 0.50s 00:00:03.04 Elapsed: 00:00:01.00 # Mc/sec: 892.58 // Query: T027370_3 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1281 (0.07856); expected 326.1 (0.02) Passed bias filter: 506 (0.0310315); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:00.76 # Mc/sec: 1174.45 // Query: T231486_1 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 5062.21 // Query: T231486_2 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.73 # Mc/sec: 4091.38 // Query: T231486_3 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 581 (0.0356311); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.78 # Mc/sec: 3825.44 // Query: T136204_1 [L=16785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0019 17.7 1.2 0.0036 16.8 1.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 1.2 2.2e-07 0.0036 6 19 .] 13411 13424 .. 13409 13424 .. 0.97 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 2.2e-07 DUF1725 6 WMELEnIILSEisQ 19 WMELE IILS+ sQ T136204_1 13411 WMELEAIILSKLSQ 13424 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.80u 0.60s 00:00:05.40 Elapsed: 00:00:01.23 # Mc/sec: 39039.86 // Query: T136204_2 [L=16785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.42u 0.57s 00:00:04.99 Elapsed: 00:00:01.20 # Mc/sec: 40015.86 // Query: T136204_3 [L=16784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.61u 0.54s 00:00:05.15 Elapsed: 00:00:01.01 # Mc/sec: 47540.76 // Query: T277926_1 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 3484.23 // Query: T277926_2 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 3587.04 // Query: T277926_3 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 3193.94 // Query: T297684_1 [L=118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.57 # Mc/sec: 582.03 // Query: T297684_2 [L=118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.64 # Mc/sec: 527.47 // Query: T297684_3 [L=117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.31s 00:00:00.74 Elapsed: 00:00:00.56 # Mc/sec: 587.22 // Query: T123946_1 [L=1195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 5027.49 // Query: T123946_2 [L=1195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 5697.82 // Query: T123946_3 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 5255.12 // Query: T229027_1 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-10 40.1 0.0 3.3e-10 39.6 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.6 0.0 2e-14 3.3e-10 112 210 .] 71 205 .. 58 205 .. 0.94 Alignments for each domain: == domain 1 score: 39.6 bits; conditional E-value: 2e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke.......................................snseg.evvvvfvlYr 171 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ ++ +g + + +++Y T229027_1 71 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYC 169 89********************.9***********************************************************75645************ PP GAIN 172 nLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229027_1 170 TPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 205 ****9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 7364.59 // Query: T229027_2 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00076 20.0 0.2 0.013 16.0 0.1 2.8 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.1 7.9e-07 0.013 10 42 .] 1041 1074 .. 1038 1074 .. 0.87 2 ? 0.2 0.0 0.069 1.1e+03 13 22 .. 1171 1180 .. 1167 1192 .. 0.80 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 7.9e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229027_2 1041 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1074 579********8544.6***************766 PP == domain 2 score: 0.2 bits; conditional E-value: 0.069 GPS 13 gsWseeGClt 22 +Ws +GC++ T229027_2 1171 QRWSVRGCRS 1180 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 7926.70 // Query: T229027_3 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 7467.18 // Query: T004111_1 [L=3260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.72 # Mc/sec: 12953.20 // Query: T004111_2 [L=3260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1121 (0.0687477); expected 326.1 (0.02) Passed bias filter: 366 (0.0224457); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.47s 00:00:02.59 Elapsed: 00:00:01.03 # Mc/sec: 9054.67 // Query: T004111_3 [L=3259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:00.87 # Mc/sec: 10716.60 // Query: T292095_1 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.74 # Mc/sec: 9019.35 // Query: T292095_2 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-43 147.0 2.3 7.9e-43 146.4 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.4 2.3 4.8e-47 7.9e-43 1 210 [. 1617 1845 .. 1617 1861 .. 0.94 Alignments for each domain: == domain 1 score: 146.4 bits; conditional E-value: 4.8e-47 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl++++ k+lnk++a + ++++kl++++q+gf p + + ++ +++++++++k k+++++++D +ka d+++ + T292095_2 1617 IPKPGrdttkKENFRPISLMNINAKILNKILAk*iQ---QHVKKLIHHDQVGFIPAMQDWFNIcksiNVIQHINRAKDKNHMIISIDAEKASDKIQQP 1711 899999999999******************964434...79999************9999999***99****************************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l++f+++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T292095_2 1712 FMLKTLNKFGIDGMYLKIVRAIYDKPTANIILNGQTLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQKKeikgiqlgkEEVKLSLFADDMIVYLE 1809 ***********************************99*********************************99************************** PP S.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 176 s.keelqelleaveewlkesglkinpeKtklvlfsg 210 + ++q+ll+ ++++ k sg+kin eK++++l+++ T292095_2 1810 NpIVSAQNLLKLISNFSKVSGYKINVEKSRAFLYTN 1845 *6677**************************98733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 9269.88 // Query: T292095_3 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.89 # Mc/sec: 7499.23 // Query: T362221_1 [L=7263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.001 18.5 9.8 0.0016 17.8 9.8 1.2 1 DUF1510 Protein of unknown function (DUF1510) ------ inclusion threshold ------ 0.65 9.8 6.8 1.2 9.0 6.8 1.3 1 Methyltransf_32 Methyltransferase domain 0.65 10.3 10.7 1.2 9.5 10.7 1.3 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle t Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 9.8 2.9e-07 0.0016 42 104 .. 1542 1623 .. 1518 1628 .. 0.39 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 2.9e-07 DUF1510 42 e......................eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekee 104 + +e+++ +++e ++e++k++kke++e+++e e e ++e+e k+e+++e++ke ++e++ke+ T362221_1 1542 SglykgqfahfplyklikkgeneKENKERKKKEMKKERKKERKKETEERKKE---EREREREKERKNEKKKERKKERKKERKKEK 1623 4555555555555554443211133333333333333333333333333222...222222222223333333333333333333 PP >> Methyltransf_32 Methyltransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 6.8 0.00022 1.2 65 128 .. 1574 1636 .. 1559 1642 .. 0.57 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00022 Methyltransf_32 65 ekaekraeklgkkfnkrlsfaelsieeatssktltkkveaeeekeeqeekesvdvligLHaCdt 128 e ++r+++ +k+ ++ +++e ++e++++ k ++kk +++e k+e+++++s+ ++++LH Cd T362221_1 1574 EMKKERKKERKKET-EERKKEEREREREKERKNEKKKERKKERKKERKKEKSPLTILALHRCDR 1636 22222333333333.333333333333333344444444888888999999***********95 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 10.7 0.00022 1.2 50 127 .. 1551 1634 .. 1540 1638 .. 0.43 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00022 Afi1 50 vFfLykdtsteee...eleeeek..knklekrkkkkse.deddvdeedeeeeddnedlde.lskdeeekagegepllyvlnvvnt 127 F Lyk ++ e+ ++e+++k k++++k++kk++e +++++ e + e+e +ne+++e +++ ++e ++++ +l +l++ + T362221_1 1551 HFPLYKLIKKGENekeNKERKKKemKKERKKERKKETEeRKKEEREREREKERKNEKKKErKKERKKE-RKKEKSPLTILALHRC 1634 56666543332220002222222333333333333333133333333333333444444433344433.5666667888888765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1588 (0.0973875); expected 326.1 (0.02) Passed bias filter: 449 (0.0275359); expected 326.1 (0.02) Passed Vit filter: 215 (0.0131853); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 5.48u 0.49s 00:00:05.97 Elapsed: 00:00:01.30 # Mc/sec: 15983.24 // Query: T362221_2 [L=7263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1061 (0.0650681); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.40u 0.52s 00:00:03.92 Elapsed: 00:00:01.04 # Mc/sec: 19979.05 // Query: T362221_3 [L=7262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1016 (0.0623084); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.48s 00:00:03.83 Elapsed: 00:00:00.92 # Mc/sec: 22581.90 // Query: T211082_1 [L=4373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.71 # Mc/sec: 17620.30 // Query: T211082_2 [L=4373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.42s 00:00:01.93 Elapsed: 00:00:00.77 # Mc/sec: 16247.29 // Query: T211082_3 [L=4373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.41s 00:00:01.94 Elapsed: 00:00:00.85 # Mc/sec: 14718.13 // Query: T368487_1 [L=391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.65 # Mc/sec: 1720.90 // Query: T368487_2 [L=391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2237.17 // Query: T368487_3 [L=391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.51 # Mc/sec: 2193.30 // Query: T278492_1 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 7281.09 // Query: T278492_2 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 6514.66 // Query: T278492_3 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6509.64 // Query: T138031_1 [L=4698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 20059.97 // Query: T138031_2 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.39s 00:00:01.76 Elapsed: 00:00:00.71 # Mc/sec: 18925.80 // Query: T138031_3 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 19760.76 // Query: T316827_1 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.63 # Mc/sec: 10298.99 // Query: T316827_2 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 10631.97 // Query: T316827_3 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 10294.45 // Query: T357978_1 [L=1023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1696 (0.104011); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 4572.86 // Query: T357978_2 [L=1023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1343 (0.0823623); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.49 # Mc/sec: 5972.71 // Query: T357978_3 [L=1023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1473 (0.0903348); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.48 # Mc/sec: 6097.14 // Query: T131393_1 [L=313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-08 34.5 0.0 0.09 12.8 0.0 3.8 4 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.5 0.0 1.4e-05 0.23 3 46 .. 67 110 .. 65 132 .. 0.83 2 ! 5.3 0.0 0.0012 19 27 64 .. 136 173 .. 118 185 .. 0.46 3 ! 12.8 0.0 5.5e-06 0.09 3 61 .. 205 263 .. 185 278 .. 0.44 4 ! 2.4 0.0 0.0095 1.6e+02 3 41 .. 250 288 .. 248 293 .. 0.72 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.4e-05 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdv 46 F++ f+ ++ + +++ l++++F +++++++ F+++ l+ + T131393_1 67 FHSIPFHSIPFHSIPLRSTPLHSTTFHYIRFHSTAFHSSPLQCT 110 77777888889999999999999999999999999999988766 PP == domain 2 score: 5.3 bits; conditional E-value: 0.0012 Pentapeptide_4 27 nFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 F ++++++ F+++ l+++ + + +++F+ + T131393_1 136 PFHSIPFHSSPFHSTPLHSTPLHSSPFHSIPFHSIPFH 173 33444443444444444444333333333333333333 PP == domain 3 score: 12.8 bits; conditional E-value: 5.5e-06 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgc 61 F++ f+ ++ + F + +++ F ++ ++++ F++ +++ f + + +++F+++ T131393_1 205 FHSIPFHSMPFHSIPFHSMPFHSIPFHSILFHAMPFHSIPFHSIPFHSMPFHSIPFHAM 263 23333333333333333333333333333334444444444444444444444444444 PP == domain 4 score: 2.4 bits; conditional E-value: 0.0095 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkc 41 F++ f+ ++ + F ++ +++ F ++++++ F++ T131393_1 250 FHSMPFHSIPFHAMPFHSIPFHAIPFHSIPCHAIAFHSF 288 666667777788888888888888888888888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.46 # Mc/sec: 1946.61 // Query: T131393_2 [L=313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.49 # Mc/sec: 1827.43 // Query: T131393_3 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.6 0.0 4.8 7.2 0.0 3.8 4 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 8 39 .. 14 25 .. 5 34 .. 0.41 2 ! 7.2 0.0 0.0003 4.8 11 49 .. 51 89 .. 49 106 .. 0.77 3 ! 4.9 0.0 0.0016 26 3 58 .. 118 173 .. 103 186 .. 0.68 4 ! 4.5 0.0 0.0021 35 3 52 .. 206 255 .. 199 268 .. 0.69 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFd 39 f ++++++ F+ T131393_3 14 F--------------------HSIPFHSIAFH 25 2....................22222222222 PP == domain 2 score: 7.2 bits; conditional E-value: 0.0003 Pentapeptide_4 11 cklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfa 49 ++++ + F+++ l+ F ++++++ F+++ ++++ + T131393_3 51 STFHCTAFYSIALHCIPFHSIPFHSIPFHSTAFHSTPLH 89 679999999999999999999998888888877777554 PP == domain 3 score: 4.9 bits; conditional E-value: 0.0016 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 F+++ fn + l+ + + ++ ++ F +++l++++++++ l++ f + + ++++ T131393_3 118 FHSAPFNCTLLHPTPLHSIPFHPIPFLSIPLHSTSLHSTPLQSIPFHSIPFHSIPL 173 55556666666666666666666666666667777777777777766666665544 PP == domain 4 score: 4.5 bits; conditional E-value: 0.0021 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaead 52 F++ f + ++ + F+++ +++ F ++++++ F++ +++ f + T131393_3 206 FHSIPFYAIPFHSIPFYAIPFHSIPFHSIPCHAIPFHSIPFHSIPFHAIP 255 55556666667777777777777777777777777777766666666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.64 # Mc/sec: 1394.65 // Query: T274833_1 [L=4248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-27 94.0 0.0 1.4e-26 93.5 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid prote 1.3e-19 70.0 0.0 3.6e-18 65.4 0.0 2.2 2 dUTPase dUTPase 2.9e-06 26.3 3.8 4.1e-06 25.8 3.8 1.1 1 Transposase_22 L1 transposable element 8.2e-05 22.1 0.0 0.00013 21.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.5 0.0 3.5e-30 1.4e-26 112 199 .. 714 801 .. 704 802 .. 0.94 Alignments for each domain: == domain 1 score: 93.5 bits; conditional E-value: 3.5e-30 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraCqgvggav 199 +ki + g++ +s + ++QGpkEpy df+a l+++l+k++ad +a++++++ La++NANpeCq+ l+p+ +++ l d+++aC+g gg T274833_1 714 KKITSGGEQYPSSSAVKQGPKEPYADFIAQLQESLKKVIADSAAQHIVLRLLAFDNANPECQATLRPITAKAHLVDYIKACDGFGGNL 801 7999999*****************************************************************************9975 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.4 0.0 8.8e-22 3.6e-18 5 127 .. 916 1030 .. 912 1035 .. 0.87 2 ? 2.2 0.0 0.031 1.3e+02 54 110 .. 3572 3628 .. 3571 3642 .. 0.89 Alignments for each domain: == domain 1 score: 65.4 bits; conditional E-value: 8.8e-22 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLif 101 + + + +sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l RS+l++kg+ v +gvidsdy+Ge+++v+ +t+ + k g+Ri qL++ T274833_1 916 CLSPTTTGSAAVDLCCTKAVSLLPgEPPQKVPTGVCGPLPAGTVGLLLSRSSLNLKGVQVQTGVIDSDYNGEIQIVI--STSVPWKAGPGERISQLLI 1011 6788999*****************7789*******************************************888887..68899************** PP EEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 102 ariltaeleevetlkatergeggfgs 127 +++++ + k++ +++ggfgs T274833_1 1012 VPYVE--M-----GKSETKQTGGFGS 1030 *9998..1.....1334445555555 PP == domain 2 score: 2.2 bits; conditional E-value: 0.031 HHHHHHHEEEEEEEEETTB.TSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEE CS dUTPase 54 Sglaakglivvpgvidsdy.rGevkvvlfnltkkdvkikkgdRiAqLifariltaele 110 S a+kg++v+ gvi dy + +++ l n +k++ k+gd + +L++ ++ ++++ T274833_1 3572 SQQAKKGVTVLAGVIYPDY*EE-ISLLLHNGGKEEYAWKTGDPLGRLLVLPCSVIKVN 3628 56799*************9998.9***************************9885554 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 3.8 1e-09 4.1e-06 164 250 .. 153 238 .. 152 241 .. 0.88 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 1e-09 HHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT--HHHHHHHH.HHHHHH.H-HHHHHHT---EEEEEEESSSS-TSSSS--E CS Transposase_22 164 revkerekrkkileqsl.qviqdtvkrPnlrliGvdesedeqlkklenil.nkiiee.nfPnlkkeanviiqeiyrtPnrqdskrassrh 250 ++ k++ekr+k++eq+l v ++vkr n ++ G++ ++e+ ++le+i+ + i nfP l+++ n +iqei+ tP + s r+s+r T274833_1 153 KTDKNKEKRMKRNEQNL*EV-CNYVKRSNQQVTGIPARDKEKVNNLEDIF*D--IIH*NFPSLARDGNNQIQEIQTTPTTFYS-RSSPRQ 238 6789************9997.58****************9999888888777..45999*******************99876.566765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.0 3.1e-08 0.00013 2 84 .. 1261 1315 .. 1259 1318 .. 0.92 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 3.1e-08 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvp 84 +Kk+ g++R++ +d++a+n++i++ + qpg++++ + +k++ l+ +Dlk++F+++p T274833_1 1261 KKKS-GKWRML----TDLRAINSVIQS---------MGALQPGLPSPAMI--------------PKNWPLIVMDLKDCFFTIP 1315 5666.*****7....7***********.........***********777..............9****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.52u 0.36s 00:00:01.88 Elapsed: 00:00:00.69 # Mc/sec: 17612.76 // Query: T274833_2 [L=4248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-06 27.2 19.2 5.3e-06 25.9 8.7 3.2 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00071 19.4 6.8 0.0043 16.9 6.2 2.9 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.045 13.8 0.0 0.072 13.1 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.4 2.7 0.0025 14 2 19 .. 824 841 .. 823 846 .. 0.93 2 ! 25.9 8.7 9.8e-10 5.3e-06 3 35 .. 860 892 .. 858 893 .. 0.90 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0025 --B-TTT-SSBS-TTT-- CS zf-CCHC_5 2 pglCpRCkkgkHwardCh 19 pg C C+k H +++C+ T274833_2 824 PGACFNCGKHGHTKKECR 841 899**************8 PP == domain 2 score: 25.9 bits; conditional E-value: 9.8e-10 -B-TTT-SSBS.-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 3 glCpRCkkgkH.wardChskfdknGnpLsanegr 35 + Cp+C kgkH ++Ch kfdk+Gnp s+n r T274833_2 860 EICPKCRKGKH*A-NQCHCKFDKDGNPISGNAMR 892 68********998.8***************9866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 6.2 8e-07 0.0043 2 18 .] 826 842 .. 825 842 .. 0.93 2 ? -2.8 0.0 1.4 7.6e+03 9 15 .. 2930 2936 .. 2929 2936 .. 0.91 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 8e-07 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T274833_2 826 ACFNCGKHGHTKKECRK 842 7**************86 PP == domain 2 score: -2.8 bits; conditional E-value: 1.4 SSSTTTT CS zf-CCHC 9 pGHiard 15 pGH+++d T274833_2 2930 PGHLSSD 2936 8****98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 1.3e-05 0.072 8 87 .. 3138 3219 .. 3137 3242 .. 0.78 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 1.3e-05 EEEEE.ECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT...SCSEEEEEES-HHHHHHHHCCCHHHHHT CS RNase_H 8 tDGsc.lgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkal..ksdekvniytDSkYvvkgitqwvhrwkkn 87 tDGs+ + ++++ a++ + +r+ ++ +e + + +EL+A++ +++++ +++++v++yt S+ v +g+ w +w+k+ T274833_2 3138 TDGSS*Y-AGITRKWTALALQTLSRTSLKHRPEGKYSQCTELQAMHLVVQSA*kEEWPDVQLYTNSRAVANGLAGWSGTWEKH 3219 6666332.244567777554444677777777899***************8776999***********************653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.52u 0.39s 00:00:01.91 Elapsed: 00:00:00.70 # Mc/sec: 17361.15 // Query: T274833_3 [L=4247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-24 87.1 0.3 3.3e-13 49.5 0.1 2.3 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 1.6e-24 85.2 0.6 4e-24 84.0 0.6 1.7 1 RVT_thumb Reverse transcriptase thumb domain 2e-20 72.8 0.0 4.3e-20 71.7 0.0 1.5 1 RVP Retroviral aspartyl protease 2.1e-18 66.5 0.0 4e-18 65.6 0.0 1.5 1 rve Integrase core domain 4.7e-14 51.9 0.2 1.1e-13 50.7 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 2.3e-12 47.1 0.2 4.6e-12 46.1 0.2 1.5 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 2.7e-12 46.8 0.5 5.1e-12 45.9 0.5 1.4 1 GP41 Retroviral envelope protein 8.2e-11 42.1 0.1 8.2e-11 42.1 0.1 1.6 1 RNase_H RNase H 9.7e-09 34.9 2.2 2.1e-08 33.8 2.2 1.5 1 G-patch G-patch domain 0.0008 19.2 1.5 0.0027 17.5 1.5 2.0 1 Integrase_Zn Integrase Zinc binding domain 0.0026 16.9 3.1 0.006 15.7 3.1 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.5 0.1 2.2e-16 3.3e-13 84 219 .. 1314 1425 .. 1302 1428 .. 0.88 2 ! 35.5 0.0 4.4e-12 6.6e-09 107 221 .. 2774 2880 .. 2761 2880 .. 0.87 Alignments for each domain: == domain 1 score: 49.5 bits; conditional E-value: 2.2e-16 BB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH.. CS RVT_1 84 pleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee.. 179 pl+e++++ +af++p vn+ +s +++ +k lpqG+ +SP++++ ++ +++++ +k++++++++rY+D il+++ ++e T274833_3 1314 PLAEQDYERFAFTIP------------------AVNNLQSDKHFHWKMLPQGMLNSPTICQTYVGQAIEPTHKKFSNCYIIRYIDNILCAAPTREIll 1393 677888888888888..................4566699****************************************************988755 PP .HHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 180 .lqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + ++++++ ++ ++l i+ +K++ + +++ yLG T274833_3 1394 *C---YDHLQNSISHANLIIALDKIQTT------TPYSYLG 1425 54...5677899999*************......8999999 PP == domain 2 score: 35.5 bits; conditional E-value: 4.4e-12 .................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 107 sflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204 s+ + ++ + ++++ + +y+ + lp G v+S +l+ ++++ l +++ +++tl++ + Di+++ s++e+ + l+ ++++l g +in +K++ T274833_3 2774 SCPKPHQKKFAFSWQ--GSQYTFTILPKGYVNSTALCHNLIQRYLDHFSL-PQDITLVHHIGDIMLIGASEQEVANTLDLLVRYLHARGWEINLTKIQ 2868 333334456667776..899****************************98.69********************************************* PP EE.....ESSEEETTEE CS RVT_1 205 lvlfsgkseevkyLGvt 221 s++vk+LGv+ T274833_3 2869 EP-----STSVKFLGVQ 2880 **.....9*******95 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.0 0.6 2.7e-27 4e-24 1 66 [] 1435 1499 .. 1435 1499 .. 0.96 Alignments for each domain: == domain 1 score: 84.0 bits; conditional E-value: 2.7e-27 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 pqk++++rd+lktLNDfQkLlgdINWi+ lgi+t+ +++LF+iL Gd++ltsp qL +eA+++L+ T274833_3 1435 PQKVTIHRDQLKTLNDFQKLLGDINWIQSALGIPTYAISNLFSILIGDPSLTSPQQL-KEAQAELQ 1499 6********************************************************.67888886 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.0 2.9e-23 4.3e-20 12 99 .. 1055 1141 .. 1053 1142 .. 0.97 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 2.9e-23 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +gk+i+al+DtGAd+++is +++P wp+ + ++ G+g+a e++qs++i+++ + + + g+++p+i++ +p+nl+GrdlLq++g++ T274833_3 1055 SGKKIKALVDTGADISIISLQHWPSMWPIPPVRFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITS-VPINLWGRDLLQQWGAQ 1141 6899******************************************************************.**************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.6 0.0 2.7e-21 4e-18 5 117 .. 1829 1935 .. 1826 1935 .. 0.90 Alignments for each domain: == domain 1 score: 65.6 bits; conditional E-value: 2.7e-21 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 ++lwq+D+t+++++++ ay+++ id+fs +++a a ++ +a + +ll+ + g p+ v +Dn+s yts+a+++f + +i++ + p+++ T274833_3 1829 NSLWQMDITYVPSFGKL--AYVHICIDTFSQFVWAPAKWES-SAYVKWHLLK-CFTVMGI--PDSVKTDNASGYTSQALATFFSVRNIKHITGIPYNS 1920 89**********66555..****************999999.6666666666.7888888..************************************ PP rve 103 qdnGkvErfnrtlkd 117 q +++vEr+n lk+ T274833_3 1921 QGQAIVERMNLSLKQ 1935 **********99986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.7 0.2 7.2e-17 1.1e-13 2 84 .] 390 472 .. 389 472 .. 0.90 Alignments for each domain: == domain 1 score: 50.7 bits; conditional E-value: 7.2e-17 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee.GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevLd 84 ++ +l++l +Ll++ G+kv + + l+++++ ve++cPWF + Gt+++e+W+ vg+ lk +a + g e ip++v+s+w+lir++L+ T274833_3 390 HKAYLSLLWKLLRKGGVKVIT-S*LTQLFSAVEKYCPWF-LD*GTMNVEVWENVGSTLK-KAYKDGaEDIPITVWSVWALIRSALE 472 678****************75.78899************.6999***************.5555666***************9985 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.1 0.2 3.1e-15 4.6e-12 8 113 .. 605 714 .. 604 721 .. 0.87 Alignments for each domain: == domain 1 score: 46.1 bits; conditional E-value: 3.1e-15 Gag_p24 8 kkaveqygpsspeviqlidala..eqalpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleq 102 k+a++qygp+sp+v+ l++++a +q++p d+ l+ a+ + ++l+ +++w ee + ++v+ a+++i+i++d+llg + q+ ++ +++eq T274833_3 605 KQAINQYGPGSPFVMRLLKNVAvfSQMTPTDWGALT*AClTPAQFLQfKTWWAEEGSTQAAHNVQ-AQPQINITADQLLGVSGWAGLDAQVVMQDDAIEQ 703 899****************98855799********99885889999999******9999555554.446************99888777777777***** PP Gag_p24 103 vrrlillalek 113 +r+++++a+ek T274833_3 704 LRAVCIRAWEK 714 *********98 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 0.5 3.4e-15 5.1e-12 27 168 .. 2418 2555 .. 2411 2557 .. 0.87 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 3.4e-15 HHHHHHHHHHHHHHHHSSC.HH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHH CS GP41 27 letQeeidkklearvnale.evvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqek 122 + Q +id kl +++n l v+ lG+ v sl+ +++l+C n C+T+ yn++e +We +k hl+g ++sld++kl++++ ++++++ T274833_3 2418 WNSQTNIDLKLANQINDLR*I-VMWLGDRVSSLEYRIQLQCDWNTSDFCITPHLYNETEhEWEIIKRHLKGH--TGNLSLDIAKLKEQVFQASQAHLT 2512 57899999***9999998555.59**********************************************94..4589******************** PP HHHHHTCHHHHH.HHHHHGCHHHHHHHHH.HHHHHHHHHCHHHHHHH CS GP41 123 tlqeldkldklaqslannfkslnWvsyik.ltvliiavgvalrvvli 168 ++ + ++ a +++ ++nW++ k l+ +i ++++l++ ++ T274833_3 2513 LMPGTEVFEGAA----DGLAAINWLKRTKtLGGSVISMMIVLLIGVV 2555 ***877777777....8999999998765377889999999988654 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.1 0.1 5.5e-14 8.2e-11 4 141 .. 1646 1770 .. 1643 1772 .. 0.73 Alignments for each domain: == domain 1 score: 42.1 bits; conditional E-value: 5.5e-14 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +v+tD s++ g+a + +k + +++++ +++++aEL Avie+L a + +v +++DS+Yvv+ tq v++++ + + t+eq ++ T274833_3 1646 ENVFTDESSN-----GKASYSGSKS--KVFQTSY---TSAQKAELVAVIEVLTA--FEMSVDVISDSSYVVH-STQLVENAQLRFY--TDEQ--LMTl 1726 5678888866.....7777744433..4555555...6****************..999*************.8999999866555..5555..4441 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++l+ +++++ ++++h+++H + + +maD l+ a T274833_3 1727 lTQLQTAVRST--MYPIYITHIRAHISLpgplTAATQMADCLVATA 1770 23555555333..458*********988676755788999887765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 2.2 1.4e-11 2.1e-08 7 44 .. 1155 1192 .. 1150 1193 .. 0.95 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 1.4e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+GLGk+ qG + P++a+ + G+G+ T274833_3 1155 HMMHEMGYVPGMGLGKNLQGLKKPLQAEGQNPHQGVGY 1192 6***********************************98 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 1.5 1.8e-06 0.0027 1 24 [. 1774 1797 .. 1774 1810 .. 0.92 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 1.8e-06 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitre 24 Ak +H+l+H+N+ +L+++++it + T274833_3 1774 AKHFHNLTHVNTSGLKHRYSITQK 1797 89*******************964 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 3.1 4e-06 0.006 5 49 .. 1992 2034 .. 1989 2035 .. 0.87 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 4e-06 EEE-SSTTS--EEEEEEEEEETTEEEE..E-SS.-EEEEEGGGEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikgrGavcvFPqdas.dikwvPeRlvrk 49 v w+d +++W +i+grG++cv + +++ +++w+P R +++ T274833_3 1992 VWWRDPITKSWE--IGKIIWGRGYACV-SPGQN*QPIWIPSRHLKP 2034 779999999998..5579*********.8888899*******9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 1.60u 0.47s 00:00:02.07 Elapsed: 00:00:00.80 # Mc/sec: 15187.43 // Query: T009716_1 [L=4600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.39s 00:00:02.06 Elapsed: 00:00:00.92 # Mc/sec: 14304.15 // Query: T009716_2 [L=4600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:00.80 # Mc/sec: 16449.77 // Query: T009716_3 [L=4599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.36s 00:00:02.04 Elapsed: 00:00:00.76 # Mc/sec: 17311.79 // Query: T222018_1 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 563 (0.0345272); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 4701.71 // Query: T222018_2 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.72 # Mc/sec: 4505.81 // Query: T222018_3 [L=1133] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1133 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 5064.56 // Query: T182958_1 [L=6613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.33u 0.41s 00:00:02.74 Elapsed: 00:00:00.86 # Mc/sec: 21998.45 // Query: T182958_2 [L=6613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.51u 0.50s 00:00:03.01 Elapsed: 00:00:00.98 # Mc/sec: 19304.76 // Query: T182958_3 [L=6612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.2 4.2e+02 1.0 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.3 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.034 5.6e+02 89 121 .. 5484 5516 .. 5480 5521 .. 0.89 4 ? 0.4 0.0 0.04 6.5e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.0 0.0 0.11 1.9e+03 94 121 .. 5577 5604 .. 5568 5610 .. 0.82 6 ? 0.7 0.0 0.034 5.5e+02 89 121 .. 5616 5648 .. 5611 5653 .. 0.90 7 ? -0.2 0.0 0.064 1e+03 86 120 .. 5657 5691 .. 5623 5696 .. 0.67 8 ? 1.0 0.0 0.026 4.2e+02 89 121 .. 5704 5736 .. 5699 5758 .. 0.90 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182958_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182958_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182958_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.04 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182958_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182958_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 56677777889***************96 PP == domain 6 score: 0.7 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182958_3 5616 ARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 67788999999999******************7 PP == domain 7 score: -0.2 bits; conditional E-value: 0.064 EEEEEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 86 sGraeveeggelayelelrvhlslPegekwGGaAf 120 s a+ +++++++ + rv+++ Pe+ ++ G Af T182958_3 5657 SQAARLRQSARVHGPRRQRVYVRAPESTHLAGSAF 5691 44455555666666677788888888888888888 PP == domain 8 score: 1.0 bits; conditional E-value: 0.026 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182958_3 5704 ARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 67788999999999*****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.12u 0.46s 00:00:02.58 Elapsed: 00:00:00.91 # Mc/sec: 20786.60 // Query: T228259_1 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 8234.22 // Query: T228259_2 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 8355.31 // Query: T228259_3 [L=1985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.70 # Mc/sec: 8112.50 // Query: T234067_1 [L=1647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 6367.28 // Query: T234067_2 [L=1646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.75 # Mc/sec: 6278.57 // Query: T234067_3 [L=1646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.66 # Mc/sec: 7134.74 // Query: T099416_1 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 424 (0.0260027); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.71 # Mc/sec: 8513.99 // Query: T099416_2 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 8395.74 // Query: T099416_3 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.79 # Mc/sec: 7648.19 // Query: T367796_1 [L=1434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 6123.03 // Query: T367796_2 [L=1434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 5697.82 // Query: T367796_3 [L=1434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.74 # Mc/sec: 5543.82 // Query: T124663_1 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.78 # Mc/sec: 5560.28 // Query: T124663_2 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 7350.88 // Query: T124663_3 [L=1515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 6667.93 // Query: T249672_1 [L=3817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 507 (0.0310928); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.38s 00:00:02.06 Elapsed: 00:00:00.80 # Mc/sec: 13649.74 // Query: T249672_2 [L=3817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.74 # Mc/sec: 14756.47 // Query: T249672_3 [L=3816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.42s 00:00:02.22 Elapsed: 00:00:00.83 # Mc/sec: 13152.92 // Query: T117919_1 [L=373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 2092.33 // Query: T117919_2 [L=372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1803.78 // Query: T117919_3 [L=372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 27 (0.00165583); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.53 # Mc/sec: 2007.98 // Query: T325803_1 [L=2383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 9212.65 // Query: T325803_2 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.73 # Mc/sec: 9334.93 // Query: T325803_3 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 10170.89 // Query: T238781_1 [L=1239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 4923.01 // Query: T238781_2 [L=1239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 5626.30 // Query: T238781_3 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-08 34.1 2.1 4.9e-08 32.0 2.1 1.9 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 2.1 3e-12 4.9e-08 333 487 .. 483 627 .. 421 676 .. 0.72 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 3e-12 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX..XXX...XXXXXXXXXXXXXXXXXXXXXXXXXXHHHH CS TLV_coat 333 ylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge....yiyaidepatR..vkRepvaltlallLgGLgiaagvgtGttglvstqqf 426 + apngt ++c+ +l + l+ + + C l + + ++ y+++ +++tR v R+ l + + vg Gt +q++ T238781_3 483 NWYAPNGTQWLCSPNLW----PWLPSGWLGCCTLGIPWAQGRWVKTMevypYLPHVVNQGTRaiVHRN-DHLPTIFMP-------SVGLGT----VIQHI 566 45578888888887777....67788888888888777776655554455677777777777332452.223333333.......223333....35667 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS------ CS TLV_coat 427 kkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFya 487 + L + + ++ +sIs ++ ++ + e +lQNR LD+L++ eGG Ca +k eCC y+ T238781_3 567 EALANFTQRALNDSLQSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIKTECCVYI 627 77777777777777899*******************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 5132.91 // Query: T222970_1 [L=5337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.1 0.4 2.7e-08 33.1 0.4 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.1 0.4 1.7e-12 2.7e-08 1 19 [] 5011 5029 .. 5011 5029 .. 0.98 Alignments for each domain: == domain 1 score: 33.1 bits; conditional E-value: 1.7e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS++sQ T222970_1 5011 SFVGTWMKLETIILSKVSQ 5029 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 557 (0.0341592); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.04u 0.42s 00:00:02.46 Elapsed: 00:00:00.84 # Mc/sec: 18176.49 // Query: T222970_2 [L=5337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-31 110.0 0.6 1.7e-31 109.4 0.6 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.4 0.6 1e-35 1.7e-31 50 222 .] 4341 4539 .. 4328 4539 .. 0.93 Alignments for each domain: == domain 1 score: 109.4 bits; conditional E-value: 1e-35 ............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHH CS RVT_1 50 stldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm 147 s++++++ +++++++k k+++++++D +kaFd+++ ++ l++l++++v+ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn+++ T222970_2 4341 SCIKSINIIQHINRSKDKNHMIISIDAEKAFDKIQQHFMLKTLNKLGVDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVL 4438 677888999999999*********************************************************99************************ PP HHHHTT-T...............TEEECTTEEEEEESSHHHHH.HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETT CS RVT_1 148 nellrelrkra.........kgvtllrYaDDililskskeelq.elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLG 219 + l r +r++ ++ + +++aDD++++ +++ +ll+ ++++ k sg+kin +K++ +l+ s+ s+++kyLG T222970_2 4439 EVLARVIRQEKeikgiqlgkEEAKSSLFADDMIVYLEKPIVSA*SLLNQISNFSKVSGYKINVQKSQPFLYtnnrqtesqimSElpftiASNRIKYLG 4536 *********99***************************99988889***********************99999888877761156678********* PP EEE CS RVT_1 220 vtl 222 ++l T222970_2 4537 IQL 4539 986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.94u 0.40s 00:00:02.34 Elapsed: 00:00:00.88 # Mc/sec: 17350.28 // Query: T222970_3 [L=5337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.44s 00:00:02.25 Elapsed: 00:00:00.77 # Mc/sec: 19828.90 // Query: T358160_1 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-28 99.6 0.0 3e-28 98.8 0.0 1.3 1 BDV_P40 Borna disease virus P40 protein Domain annotation for each model (and alignments): >> BDV_P40 Borna disease virus P40 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.8 0.0 1.9e-32 3e-28 150 331 .. 269 451 .. 235 464 .. 0.89 Alignments for each domain: == domain 1 score: 98.8 bits; conditional E-value: 1.9e-32 BDV_P40 150 gssskikagaeqikkrfktmmaalnrpshgetatllqmfnpheaidwingqp.wvgsfv...lsllttdfespgkefmdqiklvasyaq.mttyttikey 244 gss +i+a + q++k+fkt+m al++p+hg+ a ll +n i + + s+v lsl+ +fespgke++dqiklva mt+y tik + T358160_1 269 GSSDRIRASSLQVQKQFKTLMIALQQPTHGDCANLLLSYNAGPVIGLSEDHG*DHLSLV**nLSLV--EFESPGKELLDQIKLVAGR-A*MTAYYTIKMF 365 89*******************************************999888665557766668885..8***************974.6889******** PP BDV_P40 245 laecmdatltipvvayeirdflevsaklkedha.....dlfpflgairhpdaiklaprsfpnlasaafywskkenptmagyrastiqpgasv 331 l +cmd ++ +p v + v k ke +f + ga+ hp + l+p +p+la+ a yw+k+ n t +g++a i pga + T358160_1 366 LEQCMDGSIVLPSVVTD------VVFKEKEKLV*kal*KFFEYGGALYHPVMVELSPSKLPDLAAVANYWAKRLNQTYSGFKAPNIIPGANI 451 ************99764......56777888655547889*************************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.75 # Mc/sec: 5305.89 // Query: T358160_2 [L=1391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 38 (0.00233043); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 5604.81 // Query: T358160_3 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-14 52.8 0.1 4.5e-14 52.2 0.1 1.1 1 BDV_P40 Borna disease virus P40 protein Domain annotation for each model (and alignments): >> BDV_P40 Borna disease virus P40 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 0.1 2.7e-18 4.5e-14 38 149 .. 162 265 .. 154 270 .. 0.82 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 2.7e-18 BDV_P40 38 vggsdphpgighekdirqnavalldqsrrdmfhtvtpslvflcllipglhaafvhggvpresylstpvtrgeqtvvktakfyge..kttqrdlteleiss 135 + +phpg g di q l+q + fh + sl+flc+l g+h ++ gv +e+yl t v + kt +yg+ k + ++t le+ss T358160_3 162 IDADEPHPGTGEVEDIEQ-----LNQCLIQHFHLIKTSLIFLCFLFHGIHENLLTVGVSKEAYLMTSVNGKN----KTKMLYGQshKGKDPQFTFLELSS 252 56789***********99.....56666778************************************97655....56677886114455569******* PP BDV_P40 136 ifshccslligvvi 149 ++ +cc llig+ i T358160_3 253 VL-YCCDLLIGIGI 265 97.8*****98755 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6413.80 // Query: T378371_1 [L=2470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.65 # Mc/sec: 10871.15 // Query: T378371_2 [L=2469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 9948.44 // Query: T378371_3 [L=2469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.63 # Mc/sec: 11211.73 // Query: T123303_1 [L=3204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:00.72 # Mc/sec: 12730.69 // Query: T123303_2 [L=3203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.41s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 12552.38 // Query: T123303_3 [L=3203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 12382.75 // Query: T370041_1 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 8100.67 // Query: T370041_2 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 7826.07 // Query: T370041_3 [L=1614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 7961.00 // Query: T219115_1 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 2640.41 // Query: T219115_2 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3281.20 // Query: T219115_3 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2977.38 // Query: T352963_1 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 14062.46 // Query: T352963_2 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.57 # Mc/sec: 14062.46 // Query: T352963_3 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 13588.94 // Query: T172459_1 [L=1332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6804.69 // Query: T172459_2 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 7051.42 // Query: T172459_3 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6799.58 // Query: T138673_1 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 7843.88 // Query: T138673_2 [L=1507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7698.70 // Query: T138673_3 [L=1507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7698.70 // Query: T346923_1 [L=659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-14 51.7 0.1 1.3e-13 50.4 0.1 1.7 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.037 13.8 0.0 0.083 12.6 0.0 1.6 1 HTH_5 Bacterial regulatory protein, arsR family 0.18 11.6 0.0 0.44 10.3 0.0 1.6 1 MarR_2 MarR family Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.4 0.1 2.5e-17 1.3e-13 39 79 .. 455 495 .. 425 496 .. 0.92 Alignments for each domain: == domain 1 score: 50.4 bits; conditional E-value: 2.5e-17 Transposase_1 39 akgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +++li+y++ ++getitse+Yaqq+d+++qklq+++palvn T346923_1 455 TASLIHYSLPNSGETITSEKYAQQIDEMHQKLQCLQPALVN 495 689************************************98 PP >> HTH_5 Bacterial regulatory protein, arsR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 1.5e-05 0.083 10 39 .. 329 359 .. 327 362 .. 0.83 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 1.5e-05 HHTT.SSEEHHHHHHHHTS-HHHHHHHHHHH CS HTH_5 10 lLae.gelcvcelaeelglsqstvShHLkkL 39 + e + + e +eel++ stv +HLk+ T346923_1 329 AIIEgDPPTTQEVVEELNVDHSTVIRHLKQI 359 55565678999******************96 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.0 8.2e-05 0.44 11 43 .. 327 357 .. 326 359 .. 0.90 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 8.2e-05 HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdltvselarrlglsksavsrilk 43 L a+ + ++ t +e+ ++l++++s+v r lk T346923_1 327 LRAIIEGDP--PTTQEVVEELNVDHSTVIRHLK 357 678888998..6******************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 592 (0.0363057); expected 326.1 (0.02) Passed bias filter: 353 (0.0216485); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 3427.79 // Query: T346923_2 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 3245.56 // Query: T346923_3 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-08 32.8 3.6 8.8e-08 31.8 3.6 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 3.6 5.4e-12 8.8e-08 11 40 .. 417 453 .. 417 461 .. 0.96 Alignments for each domain: == domain 1 score: 31.8 bits; conditional E-value: 5.4e-12 Transposase_1 11 Wldkgetpkkvpkpelhq.......kkvmltVwWsak 40 Wld++e pk++pkp+l+q kkvm+tVwWs++ T346923_3 417 WLDQEEVPKHFPKPNLSQkkkkkkkKKVMVTVWWSTA 453 ***********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.67 # Mc/sec: 2809.59 // Query: T041845_1 [L=2163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.66 # Mc/sec: 9375.72 // Query: T041845_2 [L=2163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 10313.29 // Query: T041845_3 [L=2162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 9515.56 // Query: T188409_1 [L=3581] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3581 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.43s 00:00:02.00 Elapsed: 00:00:00.92 # Mc/sec: 11135.47 // Query: T188409_2 [L=3581] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.6 5.6 6.9 6.6 5.6 1.4 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 5.6 0.00042 6.9 66 103 .. 381 418 .. 378 439 .. 0.62 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00042 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188409_2 381 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 418 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3581 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 974 (0.0597326); expected 326.1 (0.02) Passed bias filter: 414 (0.0253894); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.92u 0.47s 00:00:02.38 Elapsed: 00:00:00.84 # Mc/sec: 12195.99 // Query: T188409_3 [L=3580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 998 (0.0612045); expected 326.1 (0.02) Passed bias filter: 325 (0.0199313); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.42s 00:00:02.22 Elapsed: 00:00:00.76 # Mc/sec: 13476.01 // Query: T316004_1 [L=3235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 724 (0.0444008); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:00.69 # Mc/sec: 13412.73 // Query: T316004_2 [L=3235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 772 (0.0473445); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.41s 00:00:01.80 Elapsed: 00:00:00.73 # Mc/sec: 12677.79 // Query: T316004_3 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 691 (0.042377); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.38s 00:00:01.93 Elapsed: 00:00:00.79 # Mc/sec: 11711.30 // Query: T312695_1 [L=1363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 6092.67 // Query: T312695_2 [L=1363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-29 99.7 0.0 1.1e-28 98.8 0.0 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.8 0.0 6.5e-33 1.1e-28 4 80 .] 1187 1262 .. 1184 1262 .. 0.94 Alignments for each domain: == domain 1 score: 98.8 bits; conditional E-value: 6.5e-33 Transposase_1 4 nkkrsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 n + aqWld++ +pk+++kp+ h k+vm++VwW a+gl++y+fl+pgetitse+Y qq+d+++ klq ++ alvnr T312695_2 1187 NGRPPAQWLDRE-APKHFRKPNSHPKRVMVSVWWFAAGLLHYSFLNPGETITSEMYVQQIDEMHLKLQYLQLALVNR 1262 666789**9875.78************************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 5651.18 // Query: T312695_3 [L=1363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6840.90 // Query: T111745_1 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4679.89 // Query: T111745_2 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 4133.90 // Query: T111745_3 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 5167.37 // Query: T284133_1 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.60 # Mc/sec: 11839.07 // Query: T284133_2 [L=2482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.77 # Mc/sec: 9221.53 // Query: T284133_3 [L=2482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.41s 00:00:01.64 Elapsed: 00:00:00.79 # Mc/sec: 8988.08 // Query: T062995_1 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 5874.57 // Query: T062995_2 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 5241.92 // Query: T062995_3 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 5678.75 // Query: T012478_1 [L=3297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.3 0.1 1.7e-06 27.6 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.1 1e-10 1.7e-06 31 90 .. 2193 2256 .. 2181 2258 .. 0.85 Alignments for each domain: == domain 1 score: 27.6 bits; conditional E-value: 1e-10 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012478_1 2193 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 2256 3577889***********888888899989999999999999*****************99877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:00.77 # Mc/sec: 12249.55 // Query: T012478_2 [L=3296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-06 27.0 0.2 4.2e-06 26.1 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 0.2 2.6e-10 4.2e-06 1 19 [] 2880 2898 .. 2880 2898 .. 0.98 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 2.6e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012478_2 2880 PFAGSWMKLEAIILSKLSQ 2898 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.65 # Mc/sec: 14506.61 // Query: T012478_3 [L=3296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 27.7 1.0 6.1e-06 25.8 0.0 2.1 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.036 5.8e+02 8 60 .. 2160 2221 .. 2155 2230 .. 0.76 2 ! 25.8 0.0 3.8e-10 6.1e-06 158 222 .] 2326 2412 .. 2302 2412 .. 0.83 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.036 -EEE......-THHHHCTB-..-.........-------HHHH................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellk 60 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k T012478_3 2160 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINK 2221 7799999999988888888555*******************999998887755443333333 PP == domain 2 score: 25.8 bits; conditional E-value: 3.8e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012478_3 2326 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 2412 256666789***************5555***************************99999988877762256678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.71 # Mc/sec: 13280.70 // Query: T261846_1 [L=6502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 930 (0.0570342); expected 326.1 (0.02) Passed bias filter: 368 (0.0225684); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.28u 0.43s 00:00:03.71 Elapsed: 00:00:00.88 # Mc/sec: 21137.63 // Query: T261846_2 [L=6502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 872 (0.0534772); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.55u 0.46s 00:00:03.01 Elapsed: 00:00:00.84 # Mc/sec: 22144.19 // Query: T261846_3 [L=6502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1311 (0.0803999); expected 326.1 (0.02) Passed bias filter: 433 (0.0265546); expected 326.1 (0.02) Passed Vit filter: 101 (0.00619404); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.84u 0.45s 00:00:04.29 Elapsed: 00:00:01.11 # Mc/sec: 16757.76 // Query: T195964_1 [L=3067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.73 # Mc/sec: 12019.40 // Query: T195964_2 [L=3067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.73 # Mc/sec: 12019.40 // Query: T195964_3 [L=3067] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3067 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:00.75 # Mc/sec: 11698.89 // Query: T143151_1 [L=412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 2104.75 // Query: T143151_2 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 1959.67 // Query: T143151_3 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 2027.24 // Query: T195974_1 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 11694.61 // Query: T195974_2 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.68 # Mc/sec: 12726.49 // Query: T195974_3 [L=3024] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3024 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.41s 00:00:01.89 Elapsed: 00:00:00.85 # Mc/sec: 10177.82 // Query: T229238_1 [L=2141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.57 # Mc/sec: 10560.41 // Query: T229238_2 [L=2141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 9007.41 // Query: T229238_3 [L=2140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 8055.49 // Query: T270478_1 [L=294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 1401.81 // Query: T270478_2 [L=293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-06 26.8 0.4 1e-05 25.3 0.2 1.9 2 RhoGAP RhoGAP domain Domain annotation for each model (and alignments): >> RhoGAP RhoGAP domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.11 1.8e+03 102 123 .. 39 60 .. 25 61 .. 0.82 2 ! 25.3 0.2 6.2e-10 1e-05 100 146 .. 68 114 .. 67 120 .. 0.82 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.11 TS-HHHHHHHHHHHHHHHHHHC CS RhoGAP 102 kLPkenratLryLlehLkrvae 123 +LP+++ ++L++L +++ r ++ T270478_2 39 HLPQTQDSCLELLPRMFVRMTS 60 79**********9999988765 PP == domain 2 score: 25.3 bits; conditional E-value: 6.2e-10 HCTS-HHHHHHHH.HHHHHHHHHHCTHHHH---HHHHHHHHHHHHCT- CS RhoGAP 100 lekLPkenratLr.yLlehLkrvaenskenkMtaknLaivfgPtLlrp 146 l++LPk+n +L +L+ +L+++ ++s+ n+Mta+nL+ +++ +++ p T270478_2 68 LDQLPKANV-VLL*CLFGVLHNIEQHSSANQMTAYNLSACIASSIFLP 114 566666665.344469****************************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 1397.04 // Query: T270478_3 [L=293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 1552.27 // Query: T229978_1 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.1 5.5 8.2 12 4.5 8.2 1.4 1 DMP1 Dentin matrix protein 1 (DMP1) Domain annotation for each model (and alignments): >> DMP1 Dentin matrix protein 1 (DMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 8.2 0.00075 12 102 215 .. 719 789 .. 707 839 .. 0.33 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.00075 DMP1 102 kddDEddSGDDtfgdedngpgpeerq.ggnsrlkseeDsadttqssEdsas..qgedsaqdttseSrdldeedevssrpesgdstkdseSeEhwvgggse 198 d d++ +Dt d n+ + + ++ ++ ++eD a+ + sEd a +ed+a+ ++se T229978_1 719 EDATHDIANEDTVHDIANEAADKGIAnEDAAHGIANEDAAHGIA-SEDAAHgiASEDAAHGIASE----------------------------------- 782 22233444444444444444444433223333333344433332.22222101122222222222................................... PP DMP1 199 gdsshgdgsefddegmq 215 + +g T229978_1 783 ----------DAAQGIA 789 ..........1111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 4005.16 // Query: T229978_2 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 4369.27 // Query: T229978_3 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 9.9 23.8 0.25 9.6 23.8 1.1 1 Glutenin_hmw High molecular weight glutenin subunit Domain annotation for each model (and alignments): >> Glutenin_hmw High molecular weight glutenin subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 23.8 1.5e-05 0.25 495 576 .. 747 834 .. 736 840 .] 0.65 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 1.5e-05 Glutenin_hmw 495 qqpaqgqqgqqlaqgqqgqqpaqvqqgqqpaqgqqgqqlgqgqqgqqpgq...gqqpaqgqqgqqpgqgqqgqqpgq...gqqpgqgq 576 ++p + q+g++ + q+g++p + q+g++p + q+g++ g+ q+g++pg+ g++p + q+g++pg+ q g++pg+ g++pg+ q T229978_3 747 RRPRHRQRGRRPRHRQRGRRPRNRQRGRRPRHRQRGRRPGHRQRGRRPGHrqgGRRPRHRQRGRRPGHRQGGRRPGHrqrGRRPGHRQ 834 4567777777777788888888888888888888888888888888887533345677778888888888888887511244455444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 4450.18 // Query: T195261_1 [L=5025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1305 (0.0800319); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.66u 0.37s 00:00:03.03 Elapsed: 00:00:01.00 # Mc/sec: 14375.67 // Query: T195261_2 [L=5025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1487 (0.0911934); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 281 (0.0172329); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.06u 0.45s 00:00:03.51 Elapsed: 00:00:00.80 # Mc/sec: 17969.59 // Query: T195261_3 [L=5025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1507 (0.09242); expected 326.1 (0.02) Passed bias filter: 351 (0.0215258); expected 326.1 (0.02) Passed Vit filter: 263 (0.016129); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.04u 0.44s 00:00:03.48 Elapsed: 00:00:00.80 # Mc/sec: 17969.59 // Query: T103726_1 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 15393.11 // Query: T103726_2 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.8e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.029 14.5 0.0 0.055 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.058 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.059 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.68 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.41 9.8 12.3 0.73 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 2.7 8.1 7.4 4.8 7.3 6.6 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.8e-142 1 368 [] 2891 3226 .. 2891 3226 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103726_2 2891 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 2976 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103726_2 2977 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3033 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103726_2 3034 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3126 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103726_2 3127 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3219 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103726_2 3220 QLLQNHA 3226 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.7e-05 0.055 1 72 [. 3261 3330 .. 3261 3335 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.7e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103726_2 3261 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3330 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2915 3038 .. 2881 3045 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103726_2 2915 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3008 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103726_2 3009 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3038 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.2e-05 0.11 3 94 .. 2956 3045 .. 2954 3047 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.2e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103726_2 2956 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3045 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00033 0.68 3 95 .. 2942 3043 .. 2941 3045 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00033 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103726_2 2942 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3036 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103726_2 3037 QEIWDYV 3043 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.73 30 124 .. 2944 3038 .. 2940 3045 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103726_2 2944 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3038 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 2.1 2.7 5.4e+03 77 96 .. 966 980 .. 952 983 .. 0.43 2 ? 15.4 2.1 6.9e-06 0.014 44 96 .. 2949 3001 .. 2942 3007 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103726_2 966 SKKKKRKKERKKR-----KK 980 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 6.9e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103726_2 2949 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3001 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 6.6 0.0024 4.8 28 89 .. 2974 3033 .. 2954 3041 .. 0.71 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0024 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103726_2 2974 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3033 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 905 (0.055501); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.65 # Mc/sec: 14682.66 // Query: T103726_3 [L=3335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.60 # Mc/sec: 15901.45 // Query: T002520_1 [L=1450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1290 (0.079112); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.59 # Mc/sec: 7030.85 // Query: T002520_2 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.63 # Mc/sec: 6579.91 // Query: T002520_3 [L=1449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 829 (0.0508402); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.43s 00:00:01.63 Elapsed: 00:00:00.63 # Mc/sec: 6579.91 // Query: T018737_1 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-61 206.4 57.3 5.2e-36 124.2 14.1 3.3 3 CCDC144C CCDC144C protein coiled-coil region 5.2e-09 36.3 0.1 5.2e-09 36.3 0.1 4.3 4 DUF3496 Domain of unknown function (DUF3496) 0.0087 15.9 1.1 0.0087 15.9 1.1 2.9 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 15.7 6.7e-32 3.6e-28 3 96 .. 1786 1879 .. 1786 1880 .. 0.98 2 ! 124.2 14.1 9.5e-40 5.2e-36 184 304 .. 1964 2075 .. 1953 2076 .. 0.96 3 ? -4.1 11.6 1.1 6.2e+03 129 204 .. 2131 2209 .. 2100 2222 .. 0.49 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 6.7e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018737_1 1786 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1879 599*****************************************************************************************95 PP == domain 2 score: 124.2 bits; conditional E-value: 9.5e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018737_1 1964 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2052 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018737_1 2053 KLMNECDHLKESLFQYEREKAER 2075 **********************9 PP == domain 3 score: -4.1 bits; conditional E-value: 1.1 CCDC144C 129 lrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqn 204 + ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ + T018737_1 2131 MAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQ 2209 4444444444444444444444443222234444444444444444433333334444444444444444444443333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 5.9 3 1.6e+04 29 94 .. 1805 1869 .. 1790 1875 .. 0.78 2 ? 1.9 0.5 0.049 2.7e+02 44 108 .. 2051 2119 .. 2037 2120 .. 0.75 3 ? -1.8 9.8 0.66 3.6e+03 8 65 .. 2148 2203 .. 2144 2221 .. 0.78 4 ! 36.3 0.1 9.5e-13 5.2e-09 64 107 .. 2231 2273 .. 2224 2275 .. 0.95 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018737_1 1805 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 1869 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 1.9 bits; conditional E-value: 0.049 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018737_1 2051 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2119 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -1.8 bits; conditional E-value: 0.66 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018737_1 2148 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2203 666789***********9..89******999984466666665.445567777777776 PP == domain 4 score: 36.3 bits; conditional E-value: 9.5e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018737_1 2231 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 2273 89*****************************.**********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 1.1 1.6e-06 0.0087 24 94 .. 1966 2035 .. 1962 2036 .. 0.95 2 ? -2.5 0.2 0.8 4.3e+03 59 80 .. 2077 2098 .. 2047 2106 .. 0.52 3 ? -0.6 5.7 0.2 1.1e+03 13 79 .. 2153 2218 .. 2118 2222 .. 0.78 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.6e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018737_1 1966 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2035 68999********************************************************76.9999986 PP == domain 2 score: -2.5 bits; conditional E-value: 0.8 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018737_1 2077 VVVRQLQQEAADSLKKLTMLES 2098 3456666666666666655554 PP == domain 3 score: -0.6 bits; conditional E-value: 0.2 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018737_1 2153 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2218 3333.45678888888888888888888888888888888888888888999999999999988885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 945 (0.0579541); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:00.63 # Mc/sec: 12560.41 // Query: T018737_2 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-17 61.1 9.6 8.3e-17 61.1 9.6 1.5 2 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 2.4 0.59 9.6e+03 28 107 .. 1347 1375 .. 1334 1384 .. 0.40 2 ! 61.1 9.6 5.1e-21 8.3e-17 96 185 .. 1878 1965 .. 1865 1967 .. 0.93 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 0.59 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018737_2 1347 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1375 22222221...................................................133333444444444444433 PP == domain 2 score: 61.1 bits; conditional E-value: 5.1e-21 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018737_2 1878 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 1965 689**********************9554.57..89*****************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 13188.43 // Query: T018737_3 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 451 (0.0276585); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 13188.43 // Query: T366973_1 [L=293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 1524.04 // Query: T366973_2 [L=292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 1518.84 // Query: T366973_3 [L=292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1465.55 // Query: T369915_1 [L=3662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 482 (0.0295597); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.62 # Mc/sec: 16897.35 // Query: T369915_2 [L=3661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.62 # Mc/sec: 16892.74 // Query: T369915_3 [L=3661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 16892.74 // Query: T095329_1 [L=293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 1524.04 // Query: T095329_2 [L=292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 1606.47 // Query: T095329_3 [L=292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 1546.97 // Query: T138438_1 [L=2562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.59 # Mc/sec: 12422.79 // Query: T138438_2 [L=2562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.60 # Mc/sec: 12215.74 // Query: T138438_3 [L=2562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 9904.66 // Query: T069657_1 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.66 # Mc/sec: 1573.46 // Query: T069657_2 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.55 # Mc/sec: 1882.95 // Query: T069657_3 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 1755.29 // Query: T283554_1 [L=2522] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-55 186.3 0.6 9.9e-55 185.7 0.6 1.2 1 Transposase_22 L1 transposable element 8.5e-09 35.1 0.0 1.6e-08 34.2 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.00028 21.0 0.0 0.00061 19.9 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 185.7 0.6 1.8e-58 9.9e-55 259 367 .. 1181 1291 .. 1177 1292 .. 0.97 Alignments for each domain: == domain 1 score: 185.7 bits; conditional E-value: 1.8e-58 HHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHH CS Transposase_22 259 lnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrll 351 + ++k+l+a+rekGrvt kGkPirlt dlsaetl+ rrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPal++ll T283554_1 1181 KSRKKMLRAAREKGRVTHKGKPIRLTVDLSAETLQPRREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALQELL 1273 5689***************************************************************************************** PP TT..T-SSXSSXXXXXXX CS Transposase_22 352 ke..knerkdryqaleqa 367 ke + er++ yq+l+++ T283554_1 1274 KEalNVERNNWYQPLQKH 1291 ****************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 0.0 3e-12 1.6e-08 134 192 .. 1895 1963 .. 1895 1968 .. 0.92 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 3e-12 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHH CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlk 192 qG++lSPllfn++++ l +r++ ++v+l+++aDD++++ ++ ++q+ll+ ++++ k T283554_1 1895 QGCPLSPLLFNIVLEVLGTAIRQEKeikrvqigkEEVKLSLFADDMIVYLENpIVSAQNLLKLISTFRK 1963 9**********************99***************************66669999998887755 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 1.1e-07 0.00061 3 95 .. 1329 1511 .. 1327 1526 .. 0.62 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 1.1e-07 EEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...................EEEEEEESSSTTSSEE........... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxx........... RF Exo_endo_phos 3 wNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...................dadaskfgtgkgqggv........... 66 N+ng ++ + ++ +la+++k++d+ v ++qE++ + ++ + + + T283554_1 1329 LNING----LNAPIKRHRLANWIKSQDPLVCCIQETHLKCKDTI--GSk*rdgriftkqmerkkkrqG--------------Lqs*slinqtln 1402 68999....7778899*******************888886665..3369999665555555555550..............455544444444 PP ..........................EEEECSEEEEEEEEEEE-SS..................................-B............ CS ..........................xxxxxxxxxxxxxxxxxxxx..................................xx............ RF Exo_endo_phos 67 ..........................avlsrfpltslvivlGDfNa..................................rl............ 88 +++ l+s +++GDfN+ +l T283554_1 1403 qqrskktkgnt*w*gnqrnkks*kqvLRDLQRDLDSNTVIMGDFNTplsildrsmrqkinkdiqdlnsaldqvnlidvyrTLhpksteymffsa 1496 4444444444577777777777775444556666888*********777666666665555555555555544444444400444443333333 PP ........EEEEEEH CS ........xxxxxxx RF Exo_endo_phos 89 ........Drilask 95 D+i+ sk T283554_1 1497 phhtysktDHIVGSK 1511 333333336666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2522 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.55 # Mc/sec: 13118.21 // Query: T283554_2 [L=2522] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-08 33.4 0.1 5.2e-08 32.6 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.6 0.1 3.2e-12 5.2e-08 62 122 .. 1823 1883 .. 1812 1887 .. 0.87 Alignments for each domain: == domain 1 score: 32.6 bits; conditional E-value: 3.2e-12 HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET........................ CS RVT_1 62 lkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngee 122 +++ ++++++++D +kaFd+++++++l++l++++++ + +++i++++ ++++++ +ng++ T283554_2 1823 KQNQSQNHMIISMDAEKAFDKIQHPFILKTLNNLGIDGMDLKIIRAIYDKPTATIILNGQS 1883 2467788**************************************************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2522 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 510 (0.0312768); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.65 # Mc/sec: 11100.02 // Query: T283554_3 [L=2521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-38 131.1 11.4 4.6e-38 130.9 6.5 2.3 2 Transposase_22 L1 transposable element 7.4e-06 25.3 0.2 1.5e-05 24.3 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) 8.3e-06 25.3 0.3 1.6e-05 24.4 0.3 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.9 6.5 8.5e-42 4.6e-38 165 268 .. 1086 1189 .. 1078 1197 .. 0.94 2 ? 2.2 0.2 0.011 59 60 146 .. 2278 2363 .. 2270 2371 .. 0.86 Alignments for each domain: == domain 1 score: 130.9 bits; conditional E-value: 8.5e-42 HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHH.T---EEEEEEESSSS-TSSSS--EEEEEES CS Transposase_22 165 evkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkke.anviiqeiyrtPnrqdskrassrhiivrtt 256 e k rekr+k+++qslq+i+d+vkr nl liGv es+ e+++klen+l++ii+enfPnl ++ an++iqei+rt r++s+ra++rhii+r+t T283554_3 1086 EDKIREKRMKRNKQSLQEIWDYVKRRNLCLIGVSESDGENGTKLENTLQNIIQENFPNL-RR*ANIQIQEIQRTALRYSSRRATPRHIIIRFT 1177 6799******************************************************9.57779**************************** PP SHHHHHHHHHHH CS Transposase_22 257 kvlnkdkilkav 268 kv+ k+k +k T283554_3 1178 KVEIKEKNVKGS 1189 *******99864 PP == domain 2 score: 2.2 bits; conditional E-value: 0.011 XXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHHH CS Transposase_22 60 lkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrid 146 k li kel+ + k+k +n k+ k+ + sk+ k+ + + +++ q ++t + + r + i s ++r+ T283554_3 2278 DKGLISRIYKELQqIYKKKTNNPIKKCA--KDMNRHFSKEDTYAAKKYMKKSSSSLVIREMQIKTTTRYHLMPVRMAIIKKSGNNRCW 2363 5667777889**9888999888877666..7999999*************999*******************************9995 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.2 2.8e-09 1.5e-05 1 19 [] 2472 2490 .. 2472 2490 .. 0.98 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 2.8e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+L +IILS+ +Q T283554_3 2472 SFAGTWMKLDTIILSKLTQ 2490 7*****************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.4 0.3 3e-09 1.6e-05 1 61 [. 1753 1822 .. 1753 1830 .. 0.79 Alignments for each domain: == domain 1 score: 24.4 bits; conditional E-value: 3e-09 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH................. CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellka 61 ipK+g ++++Rpisl+++d+k+lnk++a + ++++kl++++q+gf p + + ++ ++++++ T283554_3 1753 IPKPGrdttkKENFRPISLTNIDVKILNKILAn*iQ---QHIKKLIHHDQVGFIPEMQGWFNIhksiNVIHHI 1822 899999999999******************964434...688888***********99999998554444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 466 (0.0285784); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 10016.88 // Query: T052198_1 [L=1434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 5697.82 // Query: T052198_2 [L=1433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 5941.40 // Query: T052198_3 [L=1433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 6507.25 // Query: T369324_1 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.37s 00:00:01.75 Elapsed: 00:00:00.79 # Mc/sec: 12366.75 // Query: T369324_2 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.42s 00:00:01.78 Elapsed: 00:00:00.74 # Mc/sec: 13202.34 // Query: T369324_3 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.90 # Mc/sec: 10855.26 // Query: T122145_1 [L=6504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.09u 0.41s 00:00:02.50 Elapsed: 00:00:00.80 # Mc/sec: 23258.55 // Query: T122145_2 [L=6504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.49s 00:00:02.63 Elapsed: 00:00:00.90 # Mc/sec: 20674.26 // Query: T122145_3 [L=6503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.37s 00:00:02.66 Elapsed: 00:00:00.92 # Mc/sec: 20221.71 // Query: T381587_1 [L=1668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:00.79 # Mc/sec: 6040.33 // Query: T381587_2 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 6716.91 // Query: T381587_3 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.74 # Mc/sec: 6444.60 // Query: T157200_1 [L=1075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4590.14 // Query: T157200_2 [L=1074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5390.41 // Query: T157200_3 [L=1074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4800.83 // Query: T366583_1 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 6334.69 // Query: T366583_2 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.8 7.1 4.5 6.5 6.3 4.5 1.3 1 ASFV_J13L African swine fever virus J13L protein Domain annotation for each model (and alignments): >> ASFV_J13L African swine fever virus J13L protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 4.5 0.0004 6.5 28 48 .. 1125 1145 .. 1117 1152 .. 0.74 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0004 ASFV_J13L 28 sthmytiliaivvliiiiivl 48 h+y i+i i+++iiiii++ T366583_2 1125 KPHLYKIIIIIIIIIIIIIII 1145 579****99888877777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.68 # Mc/sec: 6521.01 // Query: T366583_3 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 7038.55 // Query: T221603_1 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 4253.10 // Query: T221603_2 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 3353.95 // Query: T221603_3 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 4111.29 // Query: T083419_1 [L=338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-21 74.0 0.1 9.9e-21 73.3 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.1 6.1e-25 9.9e-21 2 79 .. 168 245 .. 167 246 .. 0.95 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 6.1e-25 Transposase_1 2 yenkkrsaqWld.kgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 y+n++rsaqWld k + + +++ kkvm+tV sa+gli+++fl+p++titse+Y qq d++ qklq++ palv T083419_1 168 YDNQRRSAQWLD*KKLQSTSQSQT-CTGKKVMITVGLSAAGLIHCSFLNPSKTITSEKYVQQTDEMYQKLQCLLPALVI 245 89*********9999999999987.99***********************************************99985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 1559.61 // Query: T083419_2 [L=338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.039 13.6 0.1 0.075 12.7 0.1 1.4 1 IF2_N Translation initiation factor IF-2, N-terminal regi Domain annotation for each model (and alignments): >> IF2_N Translation initiation factor IF-2, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 4.6e-06 0.075 7 33 .. 97 121 .. 97 125 .. 0.89 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.6e-06 IF2_N 7 yeLAkelgvkskevikkLfkelGievk 33 +e+Akel+v+ vi +L k+ G+ k T083419_2 97 QEVAKELNVDHSTVIGHL-KQIGKV-K 121 69****************.779997.5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.59 # Mc/sec: 1638.92 // Query: T083419_3 [L=338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.65 # Mc/sec: 1487.63 // Query: T227248_1 [L=2359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1592 (0.0976328); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 163 (0.00999632); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.50s 00:00:02.69 Elapsed: 00:00:00.87 # Mc/sec: 7757.12 // Query: T227248_2 [L=2359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.40s 00:00:02.17 Elapsed: 00:00:00.73 # Mc/sec: 9244.79 // Query: T227248_3 [L=2359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00059 18.6 1.3 0.00091 17.9 1.3 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 1.3 5.6e-08 0.00091 109 285 .. 47 206 .. 6 433 .. 0.47 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 5.6e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 109 eesrkekkkeekkkkeekekesekerkqkeelkekrrpkekeke.kekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkeksskse 207 +++++++++ ++ +++ +++++++ ++++ + + + + + + + +++++ +++ + + +++ ++ + ++ ++ ++n++++++++++ ++ ++ T227248_3 47 HHHHQHQHHHHHHHHHHHQQHHHHHHHHHQHHHHHHQHHHHHHHhHHHHQHHHHHHHHHHHHDHHHHHHHHHHHHQH-HHNNHHHQHHHHHHHHHHHHHY 145 11111111111111111111111111111111111111111111011111111111111111111111111111111.1111111111111111111111 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 208 sgkeeerskdeerekeadkgkdretnrateeeeesrkssekkrrssksekkeqsegeqskkseqktektskveaeqea 285 ++ +++++++++ ++++++ + + + +++++++++++ ++++ ++++ +++++ + +q+ T227248_3 146 HHHHHHHHHHHHHHHHHHHHHHHHHH-HHQHHHHHHHHHHHQQHH----------------HHHHHHHHHHHHHHQQH 206 11111111111111111111111111.111111111111111111................11111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1013 (0.0621244); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 141 (0.00864712); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.87u 0.51s 00:00:03.38 Elapsed: 00:00:01.02 # Mc/sec: 6616.37 // Query: T365916_1 [L=3585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:00.79 # Mc/sec: 12982.37 // Query: T365916_2 [L=3585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:00.76 # Mc/sec: 13494.84 // Query: T365916_3 [L=3584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.45s 00:00:01.84 Elapsed: 00:00:00.81 # Mc/sec: 12658.29 // Query: T005248_1 [L=1235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 5608.14 // Query: T005248_2 [L=1235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 5520.51 // Query: T005248_3 [L=1235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 5520.51 // Query: T253737_1 [L=838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 3930.12 // Query: T253737_2 [L=837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 3990.86 // Query: T253737_3 [L=837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-07 31.3 0.1 1.9e-07 30.4 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.4 0.1 1.2e-11 1.9e-07 2 19 .] 583 600 .. 583 600 .. 0.99 Alignments for each domain: == domain 1 score: 30.4 bits; conditional E-value: 1.2e-11 DUF1725 2 FagKWMELEnIILSEisQ 19 Fag+WM+LE+IIL++ +Q T253737_3 583 FAGTWMKLETIILRKLTQ 600 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 3573.90 // Query: T336912_1 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.71 # Mc/sec: 2300.75 // Query: T336912_2 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.1 0.0 29 4.5 0.0 3.8 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.0017 29 3 30 .. 338 365 .. 324 368 .. 0.78 2 ? -1.0 0.0 0.091 1.5e+03 14 29 .. 418 433 .. 416 434 .. 0.71 3 ? 3.5 0.0 0.0036 59 4 32 .. 455 483 .. 452 487 .. 0.64 4 ? 1.5 0.0 0.015 2.5e+02 3 29 .. 478 504 .. 476 507 .. 0.80 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0017 EE-TTEEE-TTEEEETTEEE-TTEEEET CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIga 30 + G+ + +g a +g+ V Gd +++g T336912_2 338 RMGDEARLGDEARLGDEVRMGDEARLGD 365 5678888888888888888888887775 PP == domain 2 score: -1.0 bits; conditional E-value: 0.091 EEEETTEEE-TTEEEE CS Hexapep 14 aviggnVkIGdnvkIg 29 + +g+ V +Gd +++g T336912_2 418 CALGDEVSLGDEARLG 433 5677888888888777 PP == domain 3 score: 3.5 bits; conditional E-value: 0.0036 E-TTEEE-TTEEEETTEEE-TTEEEETTE CS Hexapep 4 IGsnvlIgpfaviggnVkIGdnvkIgagv 32 G+ +++g a +g+ + +Gd ++ g + T336912_2 455 MGDEAQLGDEARLGDEARLGDEARMGDEA 483 67777777777777777777776665544 PP == domain 4 score: 1.5 bits; conditional E-value: 0.015 EE-TTEEE-TTEEEETTEEE-TTEEEE CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIg 29 + G+ + +g a +g+ + Gd +++g T336912_2 478 RMGDEARLGDEARLGDEARMGDEARLG 504 678888889999999999999888877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.70 # Mc/sec: 2333.62 // Query: T336912_3 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 2677.92 // Query: T001524_1 [L=2783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.41s 00:00:01.64 Elapsed: 00:00:00.83 # Mc/sec: 9592.40 // Query: T001524_2 [L=2783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.72 # Mc/sec: 11057.90 // Query: T001524_3 [L=2783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 12063.17 // Query: T281917_1 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 7545.44 // Query: T281917_2 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7413.06 // Query: T281917_3 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7545.44 // Query: T051561_1 [L=5870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 31 (0.00190114); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.64 # Mc/sec: 26239.18 // Query: T051561_2 [L=5870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.31s 00:00:01.66 Elapsed: 00:00:00.62 # Mc/sec: 27085.60 // Query: T051561_3 [L=5869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0078 15.9 6.1 0.17 11.7 3.5 2.3 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 3.5 1e-05 0.17 3 39 .. 111 147 .. 106 148 .. 0.69 2 ! 7.1 0.3 0.00028 4.6 3 35 .. 141 173 .. 139 178 .. 0.76 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 tG++ +Gs+ tG++ +Gs+ tG +Gs+ tG + tG T051561_3 111 TGTVAMGSVATGSVATGSVATGTVATGSVATGTVATG 147 6677777777777777777777777777777777666 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00028 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGs 35 tG++ +Gs+ tG++ +Gs+ Gs Gs tGs T051561_3 141 TGTVATGSVATGTVATGSVARGSVARGSMATGS 173 677778888888888888888888888877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.33s 00:00:01.67 Elapsed: 00:00:00.61 # Mc/sec: 27524.94 // Query: T268136_1 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-07 30.5 0.2 6.9e-07 29.3 0.2 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.2 4.2e-11 6.9e-07 1 39 [] 567 605 .. 567 605 .. 0.98 Alignments for each domain: == domain 1 score: 29.3 bits; conditional E-value: 4.2e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++++ ++ +++++++++C++C+ T268136_1 567 HETTHLGQESLEKLFSQYFYISHLPALAKTAAQQCVTCR 605 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7937.50 // Query: T268136_2 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-12 45.3 0.0 1.1e-11 44.6 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 6.8e-11 42.4 0.0 1.5e-10 41.3 0.0 1.5 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.6 0.0 1.3e-15 1.1e-11 122 222 .] 16 111 .. 2 111 .. 0.93 Alignments for each domain: == domain 1 score: 44.6 bits; conditional E-value: 1.3e-15 ..TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 +++y++++lpqG+++ P++f ++ + l+++ + g++ll+Y+D +l+ +++ + + +a+ ++l+++++k++++K +++ +++v+yLG+t T268136_2 16 GVTTQYTWTRLPQGFKNYPTIFGEVLARDLQKFPAKDLGCVLLQYVDNLLLGHSTADGYAKGTDALLRHLEDCEYKMSKKKAQIC-----RQQVRYLGFT 110 55789********************999999999998************************************************.....9********9 PP E CS RVT_1 222 l 222 + T268136_2 111 I 111 7 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 1.8e-14 1.5e-10 5 70 .. 360 425 .. 357 431 .. 0.89 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 1.8e-14 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES- CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDS 70 +Y+DGs++ +ge++ag+ v+ + + ++pl++ +++++ EL+A++ aL+ + ++++vniytDS T268136_2 360 ELYVDGSSFISpRGERCAGYaVVTLD-DVIEAKPLPQGTSAQKEELIALTRALElS--EGKTVNIYTDS 425 68********978899****777666.34777999*******************55..9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 8237.03 // Query: T268136_3 [L=1525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 8231.63 // Query: T066053_1 [L=2970] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-51 174.6 3.6 4.9e-51 173.9 3.6 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 7.5e-25 87.3 0.0 1.4e-24 86.4 0.0 1.4 1 rve Integrase core domain 3.5e-22 79.0 0.0 5.2e-22 78.5 0.0 1.2 1 RNase_H RNase H 0.0028 17.1 0.0 0.0045 16.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 173.9 3.6 1.5e-54 4.9e-51 257 561 .] 2370 2668 .. 2364 2668 .. 0.78 Alignments for each domain: == domain 1 score: 173.9 bits; conditional E-value: 1.5e-54 XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX... CS TLV_coat 257 ltedCwlClesgppyy.eaiavngsvsnktsapacslspqlkltlsevtgqglligkvPkthqalcnktektskgse.ylvapngtvfacntgltpcl 352 ++ +C+l l + ++ +++ ++++++ +++s++++++ + ++ l+g+ + +++t ++ + + + ++g +f+c+ T066053_1 2370 RPSSCLLILSPENNSErLLVDTQRFLIHHENRTSPSTQLPHHS-PLQSLTAAALAGSLGVWVKDTPFSTPSHLFTLHlQFCLAQGLFFLCGSST---- 2462 5678888888885554044555555666666555777777777.44455555556655555555566555443344448999********9865.... PP XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX.XXX...XXXXXXXXXXXXXXX...XXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHH CS TLV_coat 353 stallnlttdlCvlaellPdislisge...yiyaidepatR.vkRepvaltlallLgGLgiaa...gvgtGttgl.vstqqfkkLqaalekDvqalee 442 ++ l++++t+ C l+ l P+i++++g +++ + + +kR + l++lL+GLg++a ++gtG++g+ s+++f +L++ + + +++ T066053_1 2463 YMCLPANWTGTCTLVFLTPKIQFANGTeelPVPLMT---PT*QKR---VIPLIPLLVGLGLSAstiALGTGIAGIsTSVTTFCSLSNDFSASITDISQ 2554 699**********************99433333322...235588...799********7766333789******9********************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHH..HHHHHHH-XXXX.XXXXXXXXXXXXXX....XX CS TLV_coat 443 sIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerle..qrqrllednqlwfegllglspwlttllstilgp 538 ++s + +++sla vvlQNRRGLDlL++e+GGlC L+EeCCFy ++sg+v d+i++ + +++ +++++ n+l g + w++++l +p T066053_1 2555 TLSVRQAQVDSLAAVVLQNRRGLDLLTAEKGGLCIFLNEECCFYLNQSGLVYDNIKNSRIEPKnlTTKQVITLNPL---GHSNWMSWVLPIL----SP 2645 ********************************************************97755541145666666666...5667777777777....** PP XXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 539 LlllLLiLllGPcilnrLvqlik 561 L+ + L+Ll+GPci++ q+i+ T066053_1 2646 LIPIFLLLLFGPCIFRLASQFIQ 2668 ****************9999985 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.0 4.4e-28 1.4e-24 3 118 .. 1734 1845 .. 1733 1846 .. 0.92 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 4.4e-28 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p + wq+D+t+++ + ++ +yllv++d+f++++ a+++ +e+++ ++ ll ++ +fg p + sDng+++ts+ ++++ + lgi+++++ p+ T066053_1 1734 APAQDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGSEKATLVISSLLSDIIPWFGL--PTSIQSDNGPAFTSQITQAVSQALGIQWKLHIPY 1827 58999*********..55556**********************7777777788888888888..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 +pq+ GkvEr+n++lk++ T066053_1 1828 HPQSSGKVERTNGLLKAH 1845 ***************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.5 0.0 1.6e-25 5.2e-22 3 142 .. 1471 1615 .. 1469 1616 .. 0.82 Alignments for each domain: == domain 1 score: 78.5 bits; conditional E-value: 1.6e-25 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 +++++ DGs+ + +++++ag+ ++++ + +++l++ +t ++aEL A+++aL a ++ +vniytDSkY+++ +++ w +++ tt+ + T066053_1 1471 DHTWFIDGSSTRPnrHSPAKAGYaIVSST-SIIEATSLPPSTTSQQAELVALTQALTlA--KGLRVNIYTDSKYAFHILHHHAVIWAERGFLTTQGS- 1564 579******9976345566****666655.445668888*****************977..99**************88888888888888666666. PP BHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 97 pvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++n++l+++l ++a +k+ + h+kgH+ + gN aD++A++aa T066053_1 1565 SIINASLIKTLLKAALlPKEAGVIHCKGHQKAsdpiALGNAYADKVARQAA 1615 7***8888877666655************555468877***********98 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 1.4e-06 0.0045 137 181 .. 797 841 .. 784 841 .. 0.93 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.4e-06 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ r + rr+t dp+ + + + + fi+qsa+di+ T066053_1 797 YKNPAQFMARSAATLRRFTALDPKRSKGRPILNIHFITQSAPDIK 841 568****************************************97 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 9e-06 0.029 2 34 .. 1818 1850 .. 1817 1858 .. 0.89 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellnee 34 gi++++ p++Pq g+vE+ ng l+ +l + + T066053_1 1818 GIQWKLHIPYHPQSSGKVERTNGLLKAHLTKLS 1850 9*************************9987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2970 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.59 # Mc/sec: 14401.13 // Query: T066053_2 [L=2969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-05 22.9 0.3 4.3e-05 22.3 0.3 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.3 2.7e-09 4.3e-05 243 280 .. 2163 2200 .. 2153 2228 .. 0.84 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 2.7e-09 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavngs 280 +++++++L a+npsl+++CwlC+ +++ y a++ +++ T066053_2 2163 INLTHSLLAASNPSLANNCWLCISLSSSAYTAVPALQT 2200 6889*****************************97654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.61 # Mc/sec: 13924.27 // Query: T066053_3 [L=2969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.057 13.6 0.0 0.1 12.7 0.0 1.3 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6.3e-06 0.1 7 89 .. 993 1070 .. 988 1070 .. 0.84 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.3e-06 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 +++ ++gk + +l+ A+++ ++ + P++ a+ ++ i g+ ++ ++ ++ +l + f+ s+l++p++pv+llG T066053_3 993 VTLTVEGKSVPFLINMEATHSTLPSFQGPAS----LASITVVDIDGQASKPLKTPQLWcQLRQYSFK--HSFLVIPTCPVPLLG 1070 78999**************************....99999****99997777666443034444455..5************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.61 # Mc/sec: 13924.27 // Query: T172829_1 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 2720.30 // Query: T172829_2 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0017 16.3 10.7 0.0074 14.2 1.7 2.0 2 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein ------ inclusion threshold ------ 0.19 11.3 0.0 4.7 6.8 0.0 2.2 2 IncA IncA protein Domain annotation for each model (and alignments): >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 1.7 9.1e-07 0.0074 501 594 .. 299 392 .. 292 398 .. 0.91 2 ! 7.1 4.4 0.00012 1 499 566 .. 388 455 .. 371 483 .. 0.76 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 9.1e-07 Herpes_BLLF1 501 skapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatspt 594 s p + sp ++ p p sp p++ p p sp l p ++ +p p p++ +p p p p + +p p sp T172829_2 299 SPLPSLQSPLPSLQHPFPSLQSPLPSLQHPFPSLQSPLLSLQRPFPSLQSPLPSLQCSVPSLQSPLPSLQFPFTSLQLPLRPLQSPLPCLQSPF 392 6679999*************************************************************99999999999999999888888875 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00012 Herpes_BLLF1 499 teskapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttpt 566 +s p + sp ++ p p sp p++ p p sp sp s + p+ sp p++ +p T172829_2 388 LQSPFPSLQSPFPSLQIPLPSLQSPFPSLQRPFPSLQSPLPSLRSPLSLPSEPSSSLQSPLPSLRSPL 455 46777888899999999999999999999999999999988889999999999999999988887775 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.0 0.00058 4.7 87 164 .. 291 362 .. 287 385 .. 0.68 2 ? 2.1 0.0 0.016 1.3e+02 76 138 .. 406 482 .. 359 501 .. 0.67 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.00058 IncA 87 esrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrs 164 +s+l + l l++ l +l+ + +l+ l slq+ + s++s l+sl++++ +l++ + l+ + v +l+s T172829_2 291 QSHLPSFQSPLPSLQSPLPSLQHPFPSLQSPLPSLQHPFPSLQSPLLSLQRPFPSLQSPLPSLQ------CSVPSLQS 362 4555555555566677777777777777777777778888888888888888888888888888......44444444 PP == domain 2 score: 2.1 bits; conditional E-value: 0.016 IncA 76 e..............srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrleslees 138 ++lq l +l+s l+ e + l++ l +l + l++ e slq++++s++s l sl + T172829_2 406 LpslqspfpslqrpfPSLQSPLPSLRSPLSLPSEPSSSLQSPLPSLRSPLSLPPEPSSSLQSLFSSLQSPLSSLWNP 482 14444444444445566666666666666666666666666666666666666666666667777776666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 2720.30 // Query: T172829_3 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 2628.08 // Query: T368555_1 [L=4101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.46s 00:00:02.23 Elapsed: 00:00:00.90 # Mc/sec: 13035.85 // Query: T368555_2 [L=4101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.38s 00:00:01.97 Elapsed: 00:00:00.82 # Mc/sec: 14307.64 // Query: T368555_3 [L=4100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.42s 00:00:01.95 Elapsed: 00:00:00.84 # Mc/sec: 13963.58 // Query: T293082_1 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.70 # Mc/sec: 9824.91 // Query: T293082_2 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.69 # Mc/sec: 9967.30 // Query: T293082_3 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.57 # Mc/sec: 11857.65 // Query: T078345_1 [L=475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (475 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 2563.95 // Query: T078345_2 [L=475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (475 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 2470.72 // Query: T078345_3 [L=474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 2118.80 // Query: T344923_1 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.70 # Mc/sec: 2108.84 // Query: T344923_2 [L=516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 2203.27 // Query: T344923_3 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.65 # Mc/sec: 2266.66 // Query: T091124_1 [L=2583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:00.77 # Mc/sec: 9596.78 // Query: T091124_2 [L=2583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 31.1 0.0 2.4e-07 30.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.4 0.0 1.5e-11 2.4e-07 134 176 .. 2525 2576 .. 2495 2578 .. 0.88 Alignments for each domain: == domain 1 score: 30.4 bits; conditional E-value: 1.5e-11 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 qG++lSPllfn++++ l r +r++ ++v+l+++aDD+ ++ ++ T091124_2 2525 QGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMNVHLEN 2576 ***********************99**********************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.60 # Mc/sec: 12315.87 // Query: T091124_3 [L=2582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 10259.25 // Query: T062625_1 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1628 (0.0998405); expected 326.1 (0.02) Passed bias filter: 517 (0.0317061); expected 326.1 (0.02) Passed Vit filter: 435 (0.0266773); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.44s 00:00:02.37 Elapsed: 00:00:00.82 # Mc/sec: 3506.26 // Query: T062625_2 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.77 # Mc/sec: 3733.94 // Query: T062625_3 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 17.9 0.2 0.0012 17.9 0.2 1.1 1 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.2 7.2e-08 0.0012 118 172 .. 213 280 .. 199 805 .. 0.71 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 7.2e-08 PHO4 118 ivlswvlsPllggllaallfllvrrlil....lkaalkllpllvlltvainaflilyk.........l 172 +v+++v+ ++ +++ ++++++v+++++ + + ++++ +++++++++++++i+++ + T062625_3 213 VVMMMVMVMMVVIMMVMVMVMMVMMVMMmmvmMVMVMTVMMMMLVMMMMMVVMMIMVRitctehaphV 280 11111111111111111111111111111111111111111111222222222222223332333320 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1582 (0.0970195); expected 326.1 (0.02) Passed bias filter: 423 (0.0259414); expected 326.1 (0.02) Passed Vit filter: 200 (0.0122654); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.64u 0.43s 00:00:02.06 Elapsed: 00:00:00.84 # Mc/sec: 3422.78 // Query: T111726_1 [L=3527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:00.81 # Mc/sec: 12456.97 // Query: T111726_2 [L=3527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.80 # Mc/sec: 12612.68 // Query: T111726_3 [L=3527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.81 # Mc/sec: 12456.97 // Query: T150286_1 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 3185.34 // Query: T150286_2 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3283.35 // Query: T150286_3 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 3387.59 // Query: T090182_1 [L=6778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.51s 00:00:02.92 Elapsed: 00:00:00.92 # Mc/sec: 21076.85 // Query: T090182_2 [L=6777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.49s 00:00:02.97 Elapsed: 00:00:01.04 # Mc/sec: 18642.16 // Query: T090182_3 [L=6777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.25u 0.39s 00:00:02.64 Elapsed: 00:00:00.88 # Mc/sec: 22031.64 // Query: T091378_1 [L=6661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.45s 00:00:02.89 Elapsed: 00:00:00.88 # Mc/sec: 21654.53 // Query: T091378_2 [L=6661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 615 (0.0377162); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.54u 0.45s 00:00:02.99 Elapsed: 00:00:00.89 # Mc/sec: 21411.22 // Query: T091378_3 [L=6661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.03u 0.41s 00:00:02.44 Elapsed: 00:00:00.74 # Mc/sec: 25751.34 // Query: T323260_1 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0072 16.4 35.3 0.025 14.7 15.5 5.7 5 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 3.8 7.9e-05 1.3 25 50 .] 326 351 .. 323 351 .. 0.87 2 ! 14.7 15.5 1.5e-06 0.025 2 46 .. 377 424 .. 376 428 .. 0.94 3 ? -2.2 0.1 0.28 4.6e+03 11 30 .. 429 448 .. 424 453 .. 0.77 4 ? -0.3 0.2 0.073 1.2e+03 22 48 .. 550 574 .. 546 581 .. 0.56 5 ? -2.5 0.0 0.36 5.8e+03 21 47 .. 1092 1118 .. 1090 1119 .. 0.77 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 7.9e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323260_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 2 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323260_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 3 score: -2.2 bits; conditional E-value: 0.28 DUF4705 11 LqapaslqasglsrpsaqLp 30 L+a+ +l++ gl r ++ L+ T323260_1 429 LRAALLLPHGGLLRQGLTLT 448 66788899999999888876 PP == domain 4 score: -0.3 bits; conditional E-value: 0.073 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323260_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP == domain 5 score: -2.5 bits; conditional E-value: 0.36 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 g++++ + A +G ++gL+rP+ T323260_1 1092 GPGQADLTTVWACRGRREEELGLERPT 1118 566666666678888888999****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 6221.24 // Query: T323260_2 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.81 # Mc/sec: 5145.96 // Query: T323260_3 [L=1456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-05 23.8 22.5 0.00032 20.7 6.3 6.6 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 0.4 0.99 1.6e+04 35 48 .. 201 214 .. 198 214 .. 0.81 2 ? -2.9 0.2 0.47 7.7e+03 21 47 .. 248 274 .. 247 276 .. 0.81 3 ? 0.9 1.2 0.031 5.1e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 20.7 6.3 2e-08 0.00032 26 50 .] 357 381 .. 336 381 .. 0.82 5 ! 18.6 8.2 8.7e-08 0.0014 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? -0.3 2.6 0.069 1.1e+03 2 14 .. 431 446 .. 430 461 .. 0.73 7 ? -2.7 0.1 0.39 6.4e+03 24 38 .. 584 598 .. 578 611 .. 0.63 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 0.99 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323260_3 201 GPGRPTCSSSRPTS 214 78888888899987 PP == domain 2 score: -2.9 bits; conditional E-value: 0.47 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 + r++a ++ A++ p l ++L + s T323260_3 248 CHRRAGAEPGEATVRPDLGLGSLASGS 274 77799999999**99999888887764 PP == domain 3 score: 0.9 bits; conditional E-value: 0.031 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323260_3 324 PGLCLPHGGLCRPSC 338 345556667777755 PP == domain 4 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323260_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323260_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: -0.3 bits; conditional E-value: 0.069 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323260_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -2.7 bits; conditional E-value: 0.39 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323260_3 584 RGSRRPLSAWQGPVR 598 666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 6828.47 // Query: T099953_1 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.6 9.1 11.0 1.9 7.4 1.4 3.3 3 Thymidylat_synt Thymidylate synthase Domain annotation for each model (and alignments): >> Thymidylat_synt Thymidylate synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 1.1 0.0012 20 59 100 .. 321 363 .. 291 389 .. 0.56 2 ? 7.4 1.4 0.00012 1.9 59 104 .. 393 439 .. 375 460 .. 0.85 3 ? 2.7 0.2 0.0031 51 73 104 .. 444 475 .. 435 545 .. 0.67 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0012 HHHHHTT--B.THHHHTTT--TTHHHHHHTTB-SSSHHHHHHH CS Thymidylat_synt 59 llWflsgetn.vkeLqekgvkiWdewadeegdlgpvYGkqwrk 100 lW+++ +++ ++ ++ +W +de ++ ++Y wr+ T099953_1 321 YLWVWRRRQDeASRVRAAYLCVWRRRQDEASRVRTAYLCVWRR 363 3455554444455555555555555555555555555555555 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00012 HHHHHTT--B.THHHHTTT--TTHHHHHHTTB-SSSHHHHHHHBTST CS Thymidylat_synt 59 llWflsgetn.vkeLqekgvkiWdewadeegdlgpvYGkqwrkfkae 104 lW+++ +++ ++ ++ +W +de ++g++Y + wr+ ++e T099953_1 393 YLWVWRRRQDeASRVRAAYLCVWRRRQDEASRVGAAYLYVWRRRQDE 439 5999999888899*****************************96655 PP == domain 3 score: 2.7 bits; conditional E-value: 0.0031 HTTT--TTHHHHHHTTB-SSSHHHHHHHBTST CS Thymidylat_synt 73 qekgvkiWdewadeegdlgpvYGkqwrkfkae 104 ++ +W +de ++g++Y wr+ ++e T099953_1 444 RAAYLCVWRRRQDEASRVGAAYLWVWRRRQDE 475 55556677777777777777777777775544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3468.21 // Query: T099953_2 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0057 16.9 11.3 0.5 10.7 1.1 2.8 2 DUF1720 Domain of unknown function (DUF1720) Domain annotation for each model (and alignments): >> DUF1720 Domain of unknown function (DUF1720) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 1.1 3e-05 0.5 3 62 .. 632 703 .. 630 716 .. 0.71 2 ! 9.4 3.8 8e-05 1.3 4 44 .. 723 765 .. 714 781 .. 0.80 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 3e-05 DUF1720 3 PqstGfqppqqqqpqqq......qplqpqpTGfmpqqqtgq.....glqpqpTGngqfap.....glqpqqTGfqe 62 P++t ++p + p+ + +p q TGf p ++q + q+TG f+p q+ +TG + T099953_2 632 PSPTALAPTHPIHPSVPa*rcpvPPHWHQHTGFIPSSLPTQ*cpvpPHWHQRTG---FIPpslpdDAQSHRTGT-N 703 677777777777777778887777778888888888888888866666668888...44445558888888887.3 PP == domain 2 score: 9.4 bits; conditional E-value: 8e-05 DUF1720 4 qstGfqppqqqqpqqq.qplqpqpTGfmpqqqtgq.glqpqpT 44 q+tGf pp+ +++ + +p q TGf+p+ + + +l+p T T099953_2 723 QRTGFIPPSLPAQRCPvPPHWHQGTGFLPPCPMMPsPLAPKHT 765 88*******9999998999999******998866589999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.70 # Mc/sec: 3220.48 // Query: T099953_3 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 3267.15 // Query: T099992_1 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-14 52.9 2.4 9.4e-14 51.9 2.4 1.5 1 KIAA1430 KIAA1430 homologue Domain annotation for each model (and alignments): >> KIAA1430 KIAA1430 homologue # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.9 2.4 5.8e-18 9.4e-14 1 69 [. 398 466 .. 398 469 .. 0.89 Alignments for each domain: == domain 1 score: 51.9 bits; conditional E-value: 5.8e-18 KIAA1430 1 HlnklknikssidnkapkkpshlskkkkklqleeerlaeiereNqiLleklseimrrkgkkknassqsq 69 H++k++++++ +d++ap +++hl++k k+l+leeerl+ ier+N++Llek +mr++g++++++++++ T099992_1 398 HRRKVQSAQPLVDTRAPLTFRHLHLKLKRLKLEEERLSVIERDNRLLLEKVASVMRTRGQTDSKNNSKH 466 9*********************************************************97444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 3198.15 // Query: T099992_2 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.69 # Mc/sec: 3105.45 // Query: T099992_3 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 3626.95 // Query: T051574_1 [L=4180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.46s 00:00:02.19 Elapsed: 00:00:00.90 # Mc/sec: 13286.97 // Query: T051574_2 [L=4180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.35s 00:00:01.91 Elapsed: 00:00:00.83 # Mc/sec: 14407.55 // Query: T051574_3 [L=4179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.81 # Mc/sec: 14759.76 // Query: T259861_1 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 11865.41 // Query: T259861_2 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:00.68 # Mc/sec: 10643.97 // Query: T259861_3 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.57 # Mc/sec: 12479.14 // Query: T052200_1 [L=1286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6813.01 // Query: T052200_2 [L=1286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 6941.56 // Query: T052200_3 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 6683.94 // Query: T381529_1 [L=5172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.60 # Mc/sec: 24660.35 // Query: T381529_2 [L=5171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.052 13.6 0.0 0.098 12.7 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6e-06 0.098 18 53 .. 1641 1676 .. 1636 1680 .. 0.89 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381529_2 1641 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1676 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.63 # Mc/sec: 23481.51 // Query: T381529_3 [L=5171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.65 # Mc/sec: 22759.00 // Query: T157178_1 [L=250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 1402.37 // Query: T157178_2 [L=250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 1430.41 // Query: T157178_3 [L=249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 1344.05 // Query: T065985_1 [L=2247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-17 62.7 0.0 6.6e-17 61.9 0.0 1.3 1 RNase_H RNase H 1.5e-05 25.1 0.0 2.6e-05 24.3 0.0 1.4 1 rve Integrase core domain ------ inclusion threshold ------ 0.024 14.0 0.1 0.07 12.5 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.9 0.0 1.2e-20 6.6e-17 8 135 .. 1367 1497 .. 1363 1503 .. 0.87 Alignments for each domain: == domain 1 score: 61.9 bits; conditional E-value: 1.2e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065985_1 1367 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1458 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065985_1 1459 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1497 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 4.7e-09 2.6e-05 55 116 .. 1672 1732 .. 1669 1732 .. 0.89 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 4.7e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065985_1 1672 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 1732 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.3e-05 0.07 126 221 .. 1020 1107 .. 985 1108 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.3e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065985_1 1020 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1106 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065985_1 1107 V 1107 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 11479.08 // Query: T065985_2 [L=2247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00026 20.4 0.0 0.00042 19.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 2.6e-08 0.00042 152 210 .. 568 626 .. 551 627 .. 0.91 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.6e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065985_2 568 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 626 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 10895.40 // Query: T065985_3 [L=2247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-16 58.5 0.0 9.1e-16 57.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.087 13.0 0.0 0.83 9.8 0.0 2.2 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.9 0.0 1.1e-19 9.1e-16 3 155 .. 419 570 .. 417 573 .. 0.85 Alignments for each domain: == domain 1 score: 57.9 bits; conditional E-value: 1.1e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065985_3 419 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 514 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065985_3 515 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 570 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.092 7.5e+02 3 28 .. 754 779 .. 752 789 .. 0.82 2 ? 9.8 0.0 0.0001 0.83 65 98 .. 810 843 .. 796 846 .. 0.80 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.092 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065985_3 754 EEPWVTLDIMATQIQFLCDTKVNYSV 779 689*****************766665 PP == domain 2 score: 9.8 bits; conditional E-value: 0.0001 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065985_3 810 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 843 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 11904.23 // Query: T090317_1 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-10 39.7 4.2 3.5e-10 39.7 4.2 2.0 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.3 0.78 1.3e+04 29 54 .. 251 275 .. 249 277 .. 0.70 2 ! 39.7 4.2 2.2e-14 3.5e-10 15 55 .. 561 601 .. 558 607 .. 0.94 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.78 Colipase-like 29 ClknseskekfCkareiflqClklrk 54 C+ ++e++ + k+r++++ +++ + T090317_1 251 CVCKRERE-REMKPRSVAQAGVQWHD 275 77766544.44589999999998875 PP == domain 2 score: 39.7 bits; conditional E-value: 2.2e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090317_1 561 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 601 567************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 7568.20 // Query: T090317_2 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-31 107.7 13.5 3.8e-31 106.9 13.5 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.9 13.5 2.3e-35 3.8e-31 13 89 .] 605 680 .. 603 680 .. 0.98 Alignments for each domain: == domain 1 score: 106.9 bits; conditional E-value: 2.3e-35 Colipase-like 13 lngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 +ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090317_2 605 PNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 680 8*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 8004.82 // Query: T090317_3 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7708.35 // Query: T239483_1 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 4340.76 // Query: T239483_2 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-52 176.8 1.8 8.6e-52 175.7 1.8 1.6 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0024 17.3 0.3 0.0057 16.1 0.3 1.5 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.11 12.8 8.4 0.35 11.2 0.0 3.4 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.7 1.8 1.6e-55 8.6e-52 1 222 [] 122 378 .. 122 378 .. 0.95 Alignments for each domain: == domain 1 score: 175.7 bits; conditional E-value: 1.6e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l++ T239483_2 122 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKT 221 899999999999***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelq 181 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ ++q T239483_2 222 LNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpMVSAQ 321 ******************************99*********************************99***************************6666** PP HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 182 elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239483_2 322 NLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 378 *************************99999988877761156678*********986 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.3 1e-06 0.0057 47 111 .. 447 516 .. 436 519 .. 0.78 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 1e-06 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239483_2 447 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 516 5678888985444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 1.3 2.6 1.4e+04 11 22 .. 491 502 .. 489 508 .. 0.72 2 ? 11.2 0.0 6.4e-05 0.35 3 30 .. 558 585 .. 556 587 .. 0.90 3 ? 5.4 0.3 0.0043 23 23 50 .. 654 681 .. 648 683 .. 0.86 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 2.6 YlbE 11 pyWYrkLnRnpe 22 +WY + nR+ + T239483_2 491 TAWYWYQNRDID 502 578888888755 PP == domain 2 score: 11.2 bits; conditional E-value: 6.4e-05 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239483_2 558 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 585 677999*******************985 PP == domain 3 score: 5.4 bits; conditional E-value: 0.0043 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239483_2 654 LISRIYNELKQIYKKKTNNHIKKWAKDM 681 5778889***************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 931 (0.0570955); expected 326.1 (0.02) Passed bias filter: 392 (0.0240402); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4258.86 // Query: T239483_3 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 4340.76 // Query: T062563_1 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 618 (0.0379002); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 12893.46 // Query: T062563_2 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-14 50.8 114.6 0.037 13.3 0.7 15.3 18 zf-ribbon_3 zinc-ribbon domain Domain annotation for each model (and alignments): >> zf-ribbon_3 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.1 1.3 5.4e-06 0.087 3 26 .] 745 767 .. 744 767 .. 0.88 2 ! 5.5 3.0 0.00064 10 4 26 .] 772 793 .. 772 793 .. 0.86 3 ! 10.6 2.9 1.7e-05 0.27 3 26 .] 784 806 .. 782 806 .. 0.88 4 ! 5.1 3.6 0.00088 14 3 26 .] 797 819 .. 795 819 .. 0.84 5 ! 6.6 2.8 0.0003 4.8 3 26 .] 810 832 .. 808 832 .. 0.87 6 ! 7.7 2.4 0.00013 2.2 4 26 .] 824 845 .. 822 845 .. 0.88 7 ! 7.4 2.7 0.00017 2.7 4 26 .] 837 858 .. 835 858 .. 0.88 8 ! 12.4 1.7 4.4e-06 0.072 3 26 .] 849 871 .. 847 871 .. 0.90 9 ! 6.8 2.7 0.00026 4.3 4 26 .] 876 897 .. 874 897 .. 0.88 10 ! 10.1 3.1 2.3e-05 0.38 4 26 .] 889 910 .. 888 910 .. 0.90 11 ! 11.0 2.4 1.2e-05 0.2 3 26 .] 901 923 .. 900 923 .. 0.90 12 ! 11.3 2.0 9.8e-06 0.16 3 26 .] 927 949 .. 926 949 .. 0.90 13 ! 11.5 2.6 8.7e-06 0.14 3 26 .] 953 975 .. 952 975 .. 0.90 14 ! 10.2 3.1 2.1e-05 0.35 3 26 .] 966 988 .. 965 988 .. 0.90 15 ! 13.3 0.7 2.3e-06 0.037 3 26 .] 992 1014 .. 991 1014 .. 0.90 16 ! 3.8 0.3 0.0022 36 4 11 .. 1019 1026 .. 1017 1030 .. 0.81 17 ! 11.6 1.5 7.9e-06 0.13 4 26 .] 1032 1053 .. 1029 1053 .. 0.90 18 ? -3.0 0.1 0.31 5.1e+03 7 13 .. 2405 2410 .. 2405 2413 .. 0.61 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 745 QSCSHCGHF-LGLRQSCSHCGHFL 767 58******6.589999*****987 PP == domain 2 score: 5.5 bits; conditional E-value: 0.00064 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C+ CG+ + C +CG++l T062563_2 772 SCSPCGHF-LGLRQSCSHCGHFL 793 6999***6.588899*****987 PP == domain 3 score: 10.6 bits; conditional E-value: 1.7e-05 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 784 QSCSHCGHF-LGLRQSCSHCGHFL 806 58******6.589999*****987 PP == domain 4 score: 5.1 bits; conditional E-value: 0.00088 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C CG +l T062563_2 797 QSCSHCGHF-LGLRQSCSQCGNFL 819 58******6.58888999999876 PP == domain 5 score: 6.6 bits; conditional E-value: 0.0003 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C CG++l T062563_2 810 QSCSQCGNF-LGLRRSCSQCGHFL 832 58******6.599999*****987 PP == domain 6 score: 7.7 bits; conditional E-value: 0.00013 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C CG++l T062563_2 824 SCSQCGHF-LGLRRSCSQCGHFL 845 8******6.599999*****987 PP == domain 7 score: 7.4 bits; conditional E-value: 0.00017 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C CG++l T062563_2 837 SCSQCGHF-LGLRRSCSQCGHFL 858 8******6.599999*****987 PP == domain 8 score: 12.4 bits; conditional E-value: 4.4e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 849 RSCSQCGHF-LGLRRSCSHCGHFL 871 58******6.5999*******987 PP == domain 9 score: 6.8 bits; conditional E-value: 0.00026 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C+ CG+ + C +CG++l T062563_2 876 SCSPCGHF-LGLRRSCSHCGHFL 897 8******6.5999*******987 PP == domain 10 score: 10.1 bits; conditional E-value: 2.3e-05 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C +CG++l T062563_2 889 SCSHCGHF-LGLRRSCSHCGHFL 910 8******6.5999*******987 PP == domain 11 score: 11.0 bits; conditional E-value: 1.2e-05 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 901 RSCSHCGHF-LGLRRSCSHCGHFL 923 58******6.5999*******987 PP == domain 12 score: 11.3 bits; conditional E-value: 9.8e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 927 RSCSHCGHF-LGLRRSCSHCGHFL 949 58******6.5999*******987 PP == domain 13 score: 11.5 bits; conditional E-value: 8.7e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 953 RSCSQCGHF-LGLRRSCSHCGHFL 975 58******6.5999*******987 PP == domain 14 score: 10.2 bits; conditional E-value: 2.1e-05 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 966 RSCSHCGHF-LGLRRSCSHCGHFL 988 58******6.5999*******987 PP == domain 15 score: 13.3 bits; conditional E-value: 2.3e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_2 992 RSCSQCGHF-LGLRRSCSHCGHFL 1014 58******6.5999*******987 PP == domain 16 score: 3.8 bits; conditional E-value: 0.0022 zf-ribbon_3 4 rCPnCGap 11 +C++CG+ T062563_2 1019 SCSQCGHF 1026 8*****95 PP == domain 17 score: 11.6 bits; conditional E-value: 7.9e-06 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 C++CG+ + C +CG++l T062563_2 1032 PCSQCGHF-LGLRRSCSHCGHFL 1053 6******6.5999*******987 PP == domain 18 score: -3.0 bits; conditional E-value: 0.31 zf-ribbon_3 7 nCGapls 13 +CG+p + T062563_2 2405 HCGHP-K 2410 58886.4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 826 (0.0506562); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.63 # Mc/sec: 11870.17 // Query: T062563_3 [L=2613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-05 24.1 81.7 0.037 13.3 0.7 10.9 14 zf-ribbon_3 zinc-ribbon domain Domain annotation for each model (and alignments): >> zf-ribbon_3 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 2.8 0.00018 2.9 4 26 .] 538 559 .. 536 559 .. 0.88 2 ! 7.9 2.3 0.00012 1.9 3 26 .] 550 572 .. 548 572 .. 0.88 3 ! 11.9 2.1 6.2e-06 0.1 3 26 .] 563 585 .. 561 585 .. 0.90 4 ! 9.9 3.3 2.7e-05 0.44 4 26 .] 577 598 .. 576 598 .. 0.90 5 ! 6.1 3.4 0.00043 7 3 26 .] 589 611 .. 587 611 .. 0.87 6 ! 7.4 2.7 0.00016 2.7 3 26 .] 602 624 .. 600 624 .. 0.88 7 ! 11.2 1.9 1e-05 0.17 3 26 .] 615 637 .. 614 637 .. 0.89 8 ! 11.9 2.1 6.4e-06 0.1 3 26 .] 641 663 .. 640 663 .. 0.90 9 ! 10.1 3.1 2.3e-05 0.37 4 26 .] 655 676 .. 654 676 .. 0.90 10 ! 6.2 3.2 0.00039 6.4 3 26 .] 667 689 .. 665 689 .. 0.86 11 ! 5.6 3.4 0.00062 10 4 26 .] 681 702 .. 679 702 .. 0.82 12 ! 13.3 0.7 2.3e-06 0.037 3 26 .] 706 728 .. 705 728 .. 0.90 13 ? -2.1 0.2 0.17 2.7e+03 16 24 .. 1548 1556 .. 1542 1557 .. 0.73 14 ? -5.7 2.0 1 1.6e+04 4 8 .. 1841 1845 .. 1841 1845 .. 0.79 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00018 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C CG++l T062563_3 538 SCSQCGHF-LGLRRSCSQCGHFL 559 8******6.599999*****987 PP == domain 2 score: 7.9 bits; conditional E-value: 0.00012 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C CG++l T062563_3 550 RSCSQCGHF-LGLRRSCSQCGHFL 572 58******6.599999*****987 PP == domain 3 score: 11.9 bits; conditional E-value: 6.2e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_3 563 RSCSQCGHF-LGLRRSCSHCGHFL 585 58******6.5999*******987 PP == domain 4 score: 9.9 bits; conditional E-value: 2.7e-05 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C +CG++l T062563_3 577 SCSHCGHF-LGLRRSCSHCGHFL 598 8******6.5999*******987 PP == domain 5 score: 6.1 bits; conditional E-value: 0.00043 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C CG++l T062563_3 589 RSCSHCGHF-LGLRRSCSQCGHFL 611 58******6.599999****9987 PP == domain 6 score: 7.4 bits; conditional E-value: 0.00016 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C CG++l T062563_3 602 RSCSQCGHF-LGLRRSCSQCGHFL 624 58******6.599999*****987 PP == domain 7 score: 11.2 bits; conditional E-value: 1e-05 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG +l T062563_3 615 RSCSQCGHF-LGLRRSCSHCGNFL 637 58******6.5999*******987 PP == domain 8 score: 11.9 bits; conditional E-value: 6.4e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_3 641 RSCSQCGHF-LGLRRSCSHCGHFL 663 58******6.5999*******987 PP == domain 9 score: 10.1 bits; conditional E-value: 2.3e-05 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 +C++CG+ + C +CG++l T062563_3 655 SCSHCGHF-LGLRRSCSHCGHFL 676 8******6.5999*******987 PP == domain 10 score: 6.2 bits; conditional E-value: 0.00039 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG +l T062563_3 667 RSCSHCGHF-LGLRRPCSHCGNFL 689 58******6.589999*****986 PP == domain 11 score: 5.6 bits; conditional E-value: 0.00062 zf-ribbon_3 4 rCPnCGaplssddnvCpyCGtkl 26 C++CG+ l ++ C +CG++l T062563_3 681 PCSHCGNFLGLRW-SCSHCGHFL 702 6******767666.6*****987 PP == domain 12 score: 13.3 bits; conditional E-value: 2.3e-06 zf-ribbon_3 3 vrCPnCGaplssddnvCpyCGtkl 26 ++C++CG+ + C +CG++l T062563_3 706 RSCSQCGHF-LGLRRSCSHCGHFL 728 58******6.5999*******987 PP == domain 13 score: -2.1 bits; conditional E-value: 0.17 zf-ribbon_3 16 dnvCpyCGt 24 ++ C +CG+ T062563_3 1548 QTGCMNCGG 1556 566999997 PP == domain 14 score: -5.7 bits; conditional E-value: 1 zf-ribbon_3 4 rCPnC 8 +CP C T062563_3 1841 SCPTC 1845 59998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 819 (0.0502269); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.63 # Mc/sec: 11865.63 // Query: T125912_1 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 9842.26 // Query: T125912_2 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.60 # Mc/sec: 9350.15 // Query: T125912_3 [L=1960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.60 # Mc/sec: 9345.38 // Query: T114671_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4644.95 // Query: T114671_2 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 4556.89 // Query: T114671_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 4556.89 // Query: T255257_1 [L=1030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 5080.44 // Query: T255257_2 [L=1030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 5357.55 // Query: T255257_3 [L=1029] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1029 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5164.55 // Query: T210934_1 [L=2616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.70 # Mc/sec: 10691.33 // Query: T210934_2 [L=2615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.87 # Mc/sec: 8598.93 // Query: T210934_3 [L=2615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 10536.72 // Query: T353221_1 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 7301.34 // Query: T353221_2 [L=1760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-06 26.0 6.1 9.9e-06 26.0 6.1 1.8 2 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.3 1 1.6e+04 6 20 .. 273 288 .. 270 292 .. 0.56 2 ! 26.0 6.1 6.1e-10 9.9e-06 1 77 [] 555 631 .. 555 631 .. 0.88 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 1 EB.TTTBCCCCEEEET CS UPAR_LY6 6 ge.ssesClpeveCpe 20 + + Cl ++ C++ T353221_2 273 DHrREPPCLASSHCYN 288 5555556666666665 PP == domain 2 score: 26.0 bits; conditional E-value: 6.1e-10 EEEEEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTT..EEEEEEEEEEESCCGGCCCCCCSTSECEEEEEEEESSTTTT CS UPAR_LY6 1 CysClge.ssesClpeveCpeadsvCvsatlklqagn..lettlvvkgCaresscrlladfinigsikvsesccqsdlcn 77 Cy Cl + + sC+ +Cp+ d+vCvs+++++ ++ e++l +C ++ +ll + ++ +++ ++scc++dlcn T353221_2 555 CYRCLAVlEGASCSVV-SCPFLDGVCVSQKVSVFGSKvrGENKLSLLSCQKDVGFPLL--KLTSAVVDSQISCCKGDLCN 631 ****************.***************99988444567788899976666666..69999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.66 # Mc/sec: 7628.88 // Query: T353221_3 [L=1760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 8681.14 // Query: T088473_1 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5035.97 // Query: T088473_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 5031.43 // Query: T088473_3 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 4952.81 // Query: T184394_1 [L=10744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 775 (0.0475285); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.82u 0.61s 00:00:05.43 Elapsed: 00:00:01.33 # Mc/sec: 23110.34 // Query: T184394_2 [L=10743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1111 (0.0681344); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.82u 0.60s 00:00:05.42 Elapsed: 00:00:01.09 # Mc/sec: 28196.24 // Query: T184394_3 [L=10743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.43u 0.47s 00:00:03.90 Elapsed: 00:00:00.96 # Mc/sec: 32014.48 // Query: T139526_1 [L=2632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.79 # Mc/sec: 9531.27 // Query: T139526_2 [L=2632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.41s 00:00:01.71 Elapsed: 00:00:00.81 # Mc/sec: 9295.93 // Query: T139526_3 [L=2632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.40s 00:00:01.52 Elapsed: 00:00:00.76 # Mc/sec: 9907.51 // Query: T004103_1 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 5258.88 // Query: T004103_2 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.76 # Mc/sec: 4705.31 // Query: T004103_3 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1648 (0.101067); expected 326.1 (0.02) Passed bias filter: 370 (0.022691); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.42s 00:00:01.82 Elapsed: 00:00:00.79 # Mc/sec: 4526.63 // Query: T137390_1 [L=2346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 8830.93 // Query: T137390_2 [L=2346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 9069.60 // Query: T137390_3 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.82 # Mc/sec: 8181.28 // Query: T222366_1 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.61 # Mc/sec: 9450.12 // Query: T222366_2 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.39s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 8734.20 // Query: T222366_3 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.76 # Mc/sec: 7584.96 // Query: T181099_1 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 4899.17 // Query: T181099_2 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 4544.16 // Query: T181099_3 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 4976.94 // Query: T082035_1 [L=4088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-08 32.2 1.2 4e-07 29.6 1.2 2.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.6 1.2 2.4e-11 4e-07 51 213 .. 176 351 .. 172 369 .. 0.76 Alignments for each domain: == domain 1 score: 29.6 bits; conditional E-value: 2.4e-11 ...........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG..-EEET............................TEEEEESB--ST-TTHHHHHHH CS RVT_1 51 tldaveellkalkkkkkaklllklDlkkaFdsvpleellrklt..afkvptklinlik...sflstrsfsvrvngeesegryekkglpqGsvlSPllfnl 145 t +v++++++ + ++k++++ ++ +k F+++++++ l+ t a+k + + k f ++++ + +g++ eg++ ++++ G++lSPllfn+ T082035_1 176 TYASVNVIHHTSRTENKNNMIFSINTEKDFHKIQHPFMLKISTn*ALKEH-----ISK*edPFTKNPQPTSYQTGKKLEGFPLRTRTRHGCPLSPLLFNV 270 55566888888888889999999999999999999999998774545555.....22222257777776666688888********************** PP HHHH...HH...TT-T.........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE........ES CS RVT_1 146 fmne...ll...relrkra...kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlfsg...kse 213 ++ ++ +e+++ + v+l+++ D ++++ ++++ +q+ll+ + ++ k s++kin +K+ +l+++ +++ T082035_1 271 VLKV*arAIr*kKEIKSTQigkETVKLSLFTDNMILYLENPKLsAQRLLDLINNFSKVSEYKINVQKSVEFLYTNnvqHES 351 **7443343222355554467799****************6666************************9998733344333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.48u 0.37s 00:00:01.85 Elapsed: 00:00:00.79 # Mc/sec: 14803.89 // Query: T082035_2 [L=4088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 13.4 2.8 0.13 11.9 2.8 1.9 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 2.8 7.8e-06 0.13 7 19 .] 848 860 .. 848 860 .. 0.99 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 7.8e-06 DUF1725 7 MELEnIILSEisQ 19 MELE IILSE +Q T082035_2 848 MELEVIILSELTQ 860 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.39u 0.39s 00:00:01.77 Elapsed: 00:00:00.91 # Mc/sec: 12851.73 // Query: T082035_3 [L=4087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:00.77 # Mc/sec: 15184.69 // Query: T318338_1 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 1929.76 // Query: T318338_2 [L=370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00017 21.2 0.0 0.00022 20.8 0.0 1.1 1 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosp Domain annotation for each model (and alignments): >> Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.0 1.4e-08 0.00022 20 54 .. 253 287 .. 236 288 .. 0.83 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 1.4e-08 TSHHHHHHHHCSEEECEEE--SS-SHHHHHHHHHH CS Phosphodiest 20 llpnlaaLakegvsapnlrpvfPtlTfpnhaslvT 54 ++pnl++La+egv+a++l p t+T p+h + +T T318338_2 253 DTPNLDHLAEEGVKAKYLMPPLVTMTSPSHFTAIT 287 79******************************888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.56 # Mc/sec: 1857.03 // Query: T318338_3 [L=370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.63 # Mc/sec: 1680.17 // Query: T174784_1 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.78 # Mc/sec: 6451.54 // Query: T174784_2 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.66 # Mc/sec: 7620.21 // Query: T174784_3 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.70 # Mc/sec: 7184.77 // Query: T272701_1 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 3936.84 // Query: T272701_2 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.71 # Mc/sec: 3715.05 // Query: T272701_3 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 4121.38 // Query: T359285_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.81 # Mc/sec: 9359.51 // Query: T359285_2 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.70 # Mc/sec: 10830.28 // Query: T359285_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-29 100.3 0.0 9.6e-29 99.9 0.0 1.1 1 FTHFS Formate--tetrahydrofolate ligase Domain annotation for each model (and alignments): >> FTHFS Formate--tetrahydrofolate ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 99.9 0.0 5.9e-33 9.6e-29 438 529 .. 1370 1461 .. 1361 1462 .. 0.96 Alignments for each domain: == domain 1 score: 99.9 bits; conditional E-value: 5.9e-33 -TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-B--B--SSSSSSSTT--SS--S-EEEEEEEEEETTTTEEEEESST-- CS FTHFS 438 dlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapkgftltvrevrlsaGagfivalageim 529 +l+l+i +ki+tia+ +Yga+++el +ea+ k++++++qg+++lp+c+aKt +Sls++p++kg+p++f l++++vr+s+Gagfi++l+g++ T359285_3 1370 NLQLPIVDKIRTIAQAVYGAKDIELCPEAQVKIDRYTQQGFGNLPICMAKTDLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTVH 1461 57889************************************************************************************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.68 # Mc/sec: 11144.62 // Query: T001153_1 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.72 # Mc/sec: 5864.70 // Query: T001153_2 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 7280.32 // Query: T001153_3 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7819.60 // Query: T368716_1 [L=1355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7178.56 // Query: T368716_2 [L=1355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 7314.01 // Query: T368716_3 [L=1354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7595.22 // Query: T004117_1 [L=1310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1359 (0.0833436); expected 326.1 (0.02) Passed bias filter: 427 (0.0261867); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 6352.01 // Query: T004117_2 [L=1310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 6813.98 // Query: T004117_3 [L=1310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 907 (0.0556237); expected 326.1 (0.02) Passed bias filter: 328 (0.0201153); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 6940.16 // Query: T036661_1 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 6932.40 // Query: T036661_2 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6810.78 // Query: T036661_3 [L=1356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 7053.25 // Query: T182469_1 [L=2070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 10210.20 // Query: T182469_2 [L=2069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.2 0.5 0.083 12.5 0.5 1.3 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.5 5.1e-06 0.083 6 15 .. 546 555 .. 543 555 .. 0.92 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5.1e-06 DUF1725 6 WMELEnIILS 15 WM LEnI+LS T182469_2 546 WMNLENIMLS 555 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.57 # Mc/sec: 10205.27 // Query: T182469_3 [L=2069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.60 # Mc/sec: 9865.10 // Query: T357418_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 2304.27 // Query: T357418_2 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 83 (0.00509015); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2346.94 // Query: T357418_3 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 2299.07 // Query: T000148_1 [L=3066] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3066 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.61 # Mc/sec: 14379.19 // Query: T000148_2 [L=3065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 14142.65 // Query: T000148_3 [L=3065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.61 # Mc/sec: 14374.50 // Query: T085853_1 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 8373.99 // Query: T085853_2 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.60 # Mc/sec: 8234.42 // Query: T085853_3 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 8234.42 // Query: T077410_1 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.62 # Mc/sec: 7715.01 // Query: T077410_2 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 7972.18 // Query: T077410_3 [L=1671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.60 # Mc/sec: 7967.41 // Query: T247580_1 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 6793.26 // Query: T247580_2 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 6565.84 // Query: T247580_3 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 6357.40 // Query: T249680_1 [L=4297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 507 (0.0310928); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.40s 00:00:02.20 Elapsed: 00:00:00.88 # Mc/sec: 13969.30 // Query: T249680_2 [L=4297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.41s 00:00:01.86 Elapsed: 00:00:00.77 # Mc/sec: 15964.92 // Query: T249680_3 [L=4296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 649 (0.0398013); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.45s 00:00:02.22 Elapsed: 00:00:00.86 # Mc/sec: 14290.84 // Query: T227004_1 [L=14336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-25 87.6 4.6 4.5e-20 71.7 2.3 2.1 2 Transposase_22 L1 transposable element 2.9e-06 26.8 0.3 2.9e-06 26.8 0.3 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 2.3 5.5e-24 4.5e-20 217 310 .. 5546 5637 .. 5539 5642 .. 0.90 2 ! 15.9 0.0 4.9e-07 0.004 204 237 .. 5722 5755 .. 5711 5766 .. 0.86 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 5.5e-24 HHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHHS-EEETTEEEE.EEE---HHHHHHHHHHHHHHHHHHH CS Transposase_22 217 eenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrekGrvtlkGkPir.ltadlsaetlkarrewtdviqilke 307 +enf nl k++n+++qe yrtP r++ k ++srh+i+++ k++il +rek ++t+ + l+ad+s etl+arrew dv++ lk T227004_1 5546 NENFLNLDKDINIQVQESYRTPSRFNPKTSTSRHLIIKL---P*DKERILEVAREKKQITYN-RATI*LAADFSVETLQARREWHDVFKGLKK 5634 7************************************75...4559***************7.5666779**********************9 PP TT- CS Transposase_22 308 kkf 310 kk T227004_1 5635 KKK 5637 985 PP == domain 2 score: 15.9 bits; conditional E-value: 4.9e-07 -HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEE CS Transposase_22 204 qlkklenilnkiieenfPnlkkeanviiqeiyrt 237 q ++ +++ki nfPnl+ke+n+++qe yrt T227004_1 5722 QRNRGRSLFKKITTKNFPNLEKEINIQVQEGYRT 5755 56666789*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.3 3.6e-10 2.9e-06 8 62 .. 6646 6705 .. 6645 6712 .. 0.85 2 ? -1.9 0.3 0.21 1.7e+03 188 213 .. 6840 6866 .. 6832 6872 .. 0.76 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 3.6e-10 -EEE......-THHHHCTB--.........-------HHHH..................H CS RVT_1 8 syRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav.....eellkal 62 +yR isl+++d k+ln ++a+r +++++k++ ++q+gf p+ + + ++ ++l+ ++ T227004_1 6646 NYRSISLMNIDAKILNTILANRVQQHIKKIIRYDQMGFIPKMQGWFNIhksiiTVLHCYQ 6705 8****************************************9999999876654455443 PP == domain 2 score: -1.9 bits; conditional E-value: 0.21 HHHHHHTT--BEGGG-EEE......ES CS RVT_1 188 eewlkesglkinpeKtklvlfsg.kse 213 ++ k +g+kin++K+ ++l+ + k++ T227004_1 6840 DKFSKVAGYKINKQKSVAFLYANsKQS 6866 5788899************97544333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 4.05u 0.47s 00:00:04.51 Elapsed: 00:00:01.26 # Mc/sec: 32549.89 // Query: T227004_2 [L=14335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-14 54.5 0.2 1.8e-14 53.7 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.7 0.2 1.1e-18 1.8e-14 63 187 .. 6706 6840 .. 6682 6849 .. 0.87 Alignments for each domain: == domain 1 score: 53.7 bits; conditional E-value: 1.1e-18 CCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--.ST-TTHHHHHHHHHHHHHTT-T.... CS RVT_1 63 kkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglp.qGsvlSPllfnlfmnellrelrkra. 158 + k k++ +++ D +k F+++++++ +++l++++++++ +n+ik++++ +++s+ +n+e+ ++++ g qG+ +SPllfn++++ l + +r++ T227004_2 6706 RMKDKNHKIISTDAEKSFEKIQFHFMIKTLKQLGIERTHLNIIKAIYNRPTASIILNEEKVKTFPLRSG-T*QGCLISPLLFNIVLEVLAKAIRQEKg 6802 456788999***********************************************9998666666666.799**********************99* PP ...........TEEECTTEEEEEESSHHH.HHHHHHHH CS RVT_1 159 ........kgvtllrYaDDililskskee.lqelleav 187 ++v+l ++ DD++++ +++++ ++ le + T227004_2 6803 iksiqigkEEVKLFLFTDDMILYLEEPKDtTKKTLELI 6840 **************************777555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 758 (0.046486); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.43u 0.62s 00:00:05.05 Elapsed: 00:00:01.10 # Mc/sec: 37281.82 // Query: T227004_3 [L=14335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 759 (0.0465473); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.49u 0.60s 00:00:05.09 Elapsed: 00:00:01.11 # Mc/sec: 36945.94 // Query: T184065_1 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 882 (0.0540905); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.41s 00:00:01.71 Elapsed: 00:00:00.71 # Mc/sec: 9404.47 // Query: T184065_2 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 683 (0.0418864); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.74 # Mc/sec: 9019.35 // Query: T184065_3 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 9961.67 // Query: T138453_1 [L=1585] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1585 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1812 (0.111125); expected 326.1 (0.02) Passed bias filter: 972 (0.05961); expected 326.1 (0.02) Passed Vit filter: 878 (0.0538452); expected 16.3 (0.001) Passed Fwd filter: 86 (0.00527413); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.51u 0.52s 00:00:05.02 Elapsed: 00:00:01.30 # Mc/sec: 3488.01 // Query: T138453_2 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.64 # Mc/sec: 7080.55 // Query: T138453_3 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.47s 00:00:02.07 Elapsed: 00:00:00.84 # Mc/sec: 5394.71 // Query: T183434_1 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-09 35.5 0.0 1e-08 34.8 0.0 1.2 1 UQ_con Ubiquitin-conjugating enzyme Domain annotation for each model (and alignments): >> UQ_con Ubiquitin-conjugating enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.8 0.0 6.1e-13 1e-08 60 96 .. 392 427 .. 390 464 .. 0.79 Alignments for each domain: == domain 1 score: 34.8 bits; conditional E-value: 6.1e-13 S--EEEESST-SCTTBETTSBB-HGGGSTTT--TTSH CS UQ_con 60 kpPkvkfvtkifHPnvdksGevcldiLkeekWspalt 96 ++Pk+ f+t+i+HP v + G++cld+Lk++ Wsp+ + T183434_1 392 SSPKICFMTRIYHPDVRHLGRICLDVLKDR-WSPSPQ 427 68**************************55.***644 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 4218.66 // Query: T183434_2 [L=987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 4706.07 // Query: T183434_3 [L=987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 4344.06 // Query: T103735_1 [L=3399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.36s 00:00:01.75 Elapsed: 00:00:00.78 # Mc/sec: 12466.62 // Query: T103735_2 [L=3399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.84 # Mc/sec: 11576.14 // Query: T103735_3 [L=3399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.057 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.35 11.3 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.4e-145 2.9e-142 1 368 [] 2954 3289 .. 2954 3289 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103735_3 2954 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3039 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103735_3 3040 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3096 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103735_3 3097 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3189 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103735_3 3190 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3282 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103735_3 3283 QLLQNHA 3289 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.057 1 72 [. 3324 3393 .. 3324 3398 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103735_3 3324 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3393 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2978 3101 .. 2944 3108 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103735_3 2978 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3071 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103735_3 3072 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3101 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 3019 3108 .. 3017 3110 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103735_3 3019 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3108 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 3005 3106 .. 3004 3108 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103735_3 3005 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3099 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103735_3 3100 QEIWDYV 3106 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 3007 3101 .. 3003 3108 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103735_3 3007 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3101 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1029 1043 .. 1015 1046 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 3012 3064 .. 3005 3070 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103735_3 1029 SKKKKRKKERKKR-----KK 1043 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103735_3 3012 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3064 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3037 3096 .. 3017 3104 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103735_3 3037 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3096 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 916 (0.0561756); expected 326.1 (0.02) Passed bias filter: 363 (0.0222617); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.82u 0.43s 00:00:02.25 Elapsed: 00:00:00.82 # Mc/sec: 11858.49 // Query: T018642_1 [L=2444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-29 102.2 0.0 4.8 7.2 0.0 23.9 26 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.75 9.6 12.8 53 3.6 0.0 8.5 10 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.4 0.0 0.0011 9.1 45 75 .. 57 88 .. 53 97 .. 0.84 2 ? 3.2 0.0 0.011 87 49 73 .. 106 131 .. 103 135 .. 0.67 3 ? 2.5 0.0 0.018 1.5e+02 46 70 .. 192 216 .. 165 222 .. 0.80 4 ? -2.3 0.0 0.57 4.6e+03 44 68 .. 332 356 .. 327 363 .. 0.77 5 ? -0.8 0.0 0.19 1.5e+03 47 65 .. 370 388 .. 367 390 .. 0.63 6 ! 5.9 0.0 0.0015 12 44 72 .. 416 445 .. 411 448 .. 0.70 7 ! 4.3 0.0 0.0049 40 46 70 .. 463 487 .. 460 492 .. 0.87 8 ? -0.9 0.0 0.2 1.6e+03 30 56 .. 571 597 .. 562 612 .. 0.70 9 ? -4.5 0.0 2 1.6e+04 47 69 .. 672 694 .. 671 697 .. 0.69 10 ? -3.7 0.0 1.6 1.3e+04 47 70 .. 740 763 .. 739 768 .. 0.67 11 ? 3.2 0.0 0.011 91 35 61 .. 797 823 .. 784 842 .. 0.61 12 ? 0.0 0.0 0.1 8.5e+02 59 68 .. 953 962 .. 927 1002 .. 0.54 13 ? -2.8 0.0 0.79 6.5e+03 48 64 .. 1007 1023 .. 1005 1033 .. 0.56 14 ? -0.1 0.0 0.12 9.4e+02 47 65 .. 1073 1091 .. 1065 1092 .. 0.59 15 ? -1.1 0.0 0.23 1.9e+03 47 73 .. 1118 1145 .. 1115 1150 .. 0.77 16 ? -2.3 0.0 0.54 4.4e+03 64 74 .. 1219 1230 .. 1203 1237 .. 0.40 17 ? -0.9 0.0 0.2 1.7e+03 47 68 .. 1437 1458 .. 1433 1461 .. 0.54 18 ! 7.2 0.0 0.00059 4.8 36 70 .. 1476 1510 .. 1463 1521 .. 0.58 19 ? 1.6 0.0 0.034 2.8e+02 46 69 .. 1594 1617 .. 1592 1619 .. 0.77 20 ! 4.5 0.0 0.0041 34 34 70 .. 1774 1810 .. 1748 1818 .. 0.68 21 ? -0.4 0.0 0.15 1.2e+03 57 74 .. 1851 1869 .. 1845 1891 .. 0.50 22 ? 2.3 0.0 0.021 1.7e+02 48 72 .. 1917 1942 .. 1915 1946 .. 0.82 23 ! 4.3 0.0 0.005 41 47 74 .. 1984 2012 .. 1978 2015 .. 0.75 24 ! 3.6 0.0 0.008 66 46 73 .. 2152 2180 .. 2132 2183 .. 0.78 25 ! 6.6 0.0 0.00091 7.5 40 69 .. 2240 2269 .. 2215 2276 .. 0.67 26 ? 3.1 0.0 0.012 95 44 67 .. 2361 2384 .. 2355 2389 .. 0.47 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0011 Pentapeptide_4 45 dvdfaeadlkrasFsgcdlknvnfsg.klkda 75 + ++++++++ ++sg+d ++v+++g ++++ T018642_1 57 KMEWNGIEWTAGEWSGMDCNGVEWNGmEWNGM 88 67899999999999999999999988788765 PP == domain 2 score: 3.2 bits; conditional E-value: 0.011 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.klk 73 + ++++ +++sg+d+++v++sg +++ T018642_1 106 NVMEWSGVEWSGFDWSGVEWSGtEWN 131 55677777777777777777764565 PP == domain 3 score: 2.5 bits; conditional E-value: 0.018 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 v+++ ++++ +++sg ++++v++++ T018642_1 192 VEWSSVEWNGVELSGKEWRGVEWNR 216 6777788888888888888888754 PP == domain 4 score: -2.3 bits; conditional E-value: 0.57 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnf 68 + v+++++++k ++ sg++ ++v + T018642_1 332 ERVEWNGMEWKGVECSGMERSGVAW 356 5688999999998888887776665 PP == domain 5 score: -0.8 bits; conditional E-value: 0.19 Pentapeptide_4 47 dfaeadlkrasFsgcdlkn 65 ++++++++ +++ g++++n T018642_1 370 EWNGVEWNGMEWNGMEWRN 388 5666666666666666665 PP == domain 6 score: 5.9 bits; conditional E-value: 0.0015 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnfsg.kl 72 + v++++++++ + ++g+++++v++sg ++ T018642_1 416 NAVEWNGMEWNGMGLTGVEWSGVKWSGvEW 445 457777777777777777777777776555 PP == domain 7 score: 4.3 bits; conditional E-value: 0.0049 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 v +++++++ +++sg+++ +v+++g T018642_1 463 VGWSGVHWNGVEWSGMEWDGVEWRG 487 67999**************999986 PP == domain 8 score: -0.9 bits; conditional E-value: 0.2 Pentapeptide_4 30 eanlsnvnFdkcllsdvdfaeadlkra 56 +++++ ++++ + s v++++++++r+ T018642_1 571 GVKCNGMEWSGVEGSGVEWTGVKWSRL 597 344466777777777777777777765 PP == domain 9 score: -4.5 bits; conditional E-value: 2 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfs 69 ++++++ + +++ g++ ++ ++s T018642_1 672 EWSGVECNGVEWNGMERNGMEWS 694 67777777777777777777775 PP == domain 10 score: -3.7 bits; conditional E-value: 1.6 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg 70 ++++++++ ++ sg ++++ +++ T018642_1 740 EWSGMEWNGMECSGKQWNGMLWNR 763 577777777777777777777654 PP == domain 11 score: 3.2 bits; conditional E-value: 0.011 Pentapeptide_4 35 nvnFdkcllsdvdfaeadlkrasFsgc 61 +n++ ++ s v +++++++ + +sg+ T018642_1 797 GMNWSGAEWSGVVWSGMEWNGMGWSGM 823 344444444445555555555555554 PP == domain 12 score: 0.0 bits; conditional E-value: 0.1 Pentapeptide_4 59 sgcdlknvnf 68 g+++ ++++ T018642_1 953 NGMEWDGIEW 962 3333322222 PP == domain 13 score: -2.8 bits; conditional E-value: 0.79 Pentapeptide_4 48 faeadlkrasFsgcdlk 64 +++++l+++++sg++ + T018642_1 1007 WNGVELSEVEWSGVECN 1023 55555555555555444 PP == domain 14 score: -0.1 bits; conditional E-value: 0.12 Pentapeptide_4 47 dfaeadlkrasFsgcdlkn 65 d++ ++++r+++sg+++++ T018642_1 1073 DWNAMEWNRVEWSGVEWSG 1091 4556666666666665554 PP == domain 15 score: -1.1 bits; conditional E-value: 0.23 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klk 73 ++++++++ +++s + ++ +++g +++ T018642_1 1118 EWNGMEWNGMQWSLVHKSGMEWDGmEWN 1145 7889999999999888888888765665 PP == domain 16 score: -2.3 bits; conditional E-value: 0.54 Pentapeptide_4 64 knvnfsg.klkd 74 ++v+++g ++++ T018642_1 1219 NGVEWNGmEWNG 1230 333333323222 PP == domain 17 score: -0.9 bits; conditional E-value: 0.2 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnf 68 +++++++ + +sg+++++ + T018642_1 1437 EWRGMEWDGVGWSGVEWRGLDL 1458 4555555555555555555544 PP == domain 18 score: 7.2 bits; conditional E-value: 0.00059 Pentapeptide_4 36 vnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 ++++ + s vd++ + ++++++sg+++++ +++g T018642_1 1476 MEWRGVVWSGVDWNSIGWNDMEWSGMEWNGMEWNG 1510 34444444445555555555555555555555544 PP == domain 19 score: 1.6 bits; conditional E-value: 0.034 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfs 69 +++ ++++r+++sg+++++ ++ T018642_1 1594 MEWSAVEWSRVEWSGVEWNGMGWN 1617 578888899999998888888775 PP == domain 20 score: 4.5 bits; conditional E-value: 0.0041 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 + ++++ + s ++++++++ +++ g+++++ ++++ T018642_1 1774 NGMEWSGVHRSAMEWDGMEWNGMEWNGMEWNTMEWNA 1810 4455566666667777777777777777777777765 PP == domain 21 score: -0.4 bits; conditional E-value: 0.15 Pentapeptide_4 57 sFsgcdlknvnfsg.klkd 74 +++g+++ +v+++g +l++ T018642_1 1851 NYTGMEWIGVEWRGmELNG 1869 4444444444444334433 PP == domain 22 score: 2.3 bits; conditional E-value: 0.021 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfs.gkl 72 ++++++ +++ g+++++v++s gk+ T018642_1 1917 CSGMKWSGMQWNGMEWRGVEWS*GKW 1942 67899999*********999986665 PP == domain 23 score: 4.3 bits; conditional E-value: 0.005 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klkd 74 +++ ++++ +++ g+++++v+++g ++++ T018642_1 1984 EWNMVEWNGVEWIGVEWSGVKWNGvEWNR 2012 67788888888888888888887766655 PP == domain 24 score: 3.6 bits; conditional E-value: 0.008 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klk 73 v++ ++++ + +sg+++++ +++g +++ T018642_1 2152 VEWIGIQWDGMVWSGVQWNGMEWNGmEWN 2180 67888888888888888888888776766 PP == domain 25 score: 6.6 bits; conditional E-value: 0.00091 Pentapeptide_4 40 kcllsdvdfaeadlkrasFsgcdlknvnfs 69 + + v++++++++ +++ g+++++v++s T018642_1 2240 GVEWNGVEWSGVEWSGMEWDGMEWSGVELS 2269 444445555555555555555555555554 PP == domain 26 score: 3.1 bits; conditional E-value: 0.012 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvn 67 s v+++++++ +++sg+++++ + T018642_1 2361 SGVEWSGVEWCGVEWSGMEWNGME 2384 234444555555555555554444 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 0.076 6.2e+02 46 73 .. 416 443 .. 410 448 .. 0.56 2 ? 0.8 0.2 0.047 3.8e+02 38 72 .. 473 507 .. 460 508 .. 0.56 3 ? 0.1 0.0 0.078 6.3e+02 46 73 .. 796 823 .. 785 835 .. 0.57 4 ? -3.2 0.1 0.86 7e+03 41 68 .. 1360 1387 .. 1360 1389 .. 0.81 5 ? -1.7 0.0 0.29 2.4e+03 45 65 .. 1438 1458 .. 1428 1461 .. 0.42 6 ? -2.6 0.0 0.56 4.6e+03 51 72 .. 1484 1505 .. 1467 1529 .. 0.47 7 ? 1.2 0.0 0.036 2.9e+02 50 78 .. 1753 1781 .. 1748 1800 .. 0.53 8 ? -0.4 0.0 0.12 9.6e+02 35 63 .. 2144 2172 .. 2130 2187 .. 0.44 9 ? 3.6 0.0 0.0066 53 42 78 .. 2235 2271 .. 2233 2277 .. 0.88 10 ? -2.2 0.0 0.41 3.3e+03 42 73 .. 2357 2388 .. 2356 2389 .. 0.63 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.076 Lamprin 46 gglgygglgvaglgvaglgygglgypga 73 + + g+ + g+g++g+ + g+ + g T018642_1 416 NAVEWNGMEWNGMGLTGVEWSGVKWSGV 443 4555556666666666666666655554 PP == domain 2 score: 0.8 bits; conditional E-value: 0.047 Lamprin 38 hpvgglgygglgygglgvaglgvaglgygglgypg 72 g+ + g+ + g+ +g +g+ + g+gy g T018642_1 473 VEWSGMEWDGVEWRGVECSGEERSGIEWNGIGYNG 507 33345555666666666666666666666666665 PP == domain 3 score: 0.1 bits; conditional E-value: 0.078 Lamprin 46 gglgygglgvaglgvaglgygglgypga 73 g+ + g ++g+ +g+ + g+g+ g T018642_1 796 NGMNWSGAEWSGVVWSGMEWNGMGWSGM 823 4555555555555555555555555543 PP == domain 4 score: -3.2 bits; conditional E-value: 0.86 Lamprin 41 gglgygglgygglgvaglgvaglgyggl 68 gg+ + g+ + g+ g+ +g+ + gl T018642_1 1360 GGMEWNGVEWNGMEGNGMECSGVDWSGL 1387 7888888999999888998888888887 PP == domain 5 score: -1.7 bits; conditional E-value: 0.29 Lamprin 45 ygglgygglgvaglgvaglgy 65 + g+ + g+g++g+ gl T018642_1 1438 WRGMEWDGVGWSGVEWRGLDL 1458 333333333333333333332 PP == domain 6 score: -2.6 bits; conditional E-value: 0.56 Lamprin 51 gglgvaglgvaglgygglgypg 72 g+ + +g + + g+ + g T018642_1 1484 SGVDWNSIGWNDMEWSGMEWNG 1505 2222222222222222222222 PP == domain 7 score: 1.2 bits; conditional E-value: 0.036 Lamprin 50 ygglgvaglgvaglgygglgypgaalggv 78 + g+ +g+g g+ + +g+ g gv T018642_1 1753 WSGVECSGVGWNGMEWNEMGWNGMEWSGV 1781 44444444444444444444444444443 PP == domain 8 score: -0.4 bits; conditional E-value: 0.12 Lamprin 35 flghpvgglgygglgygglgvaglgvagl 63 + g g+ + g+ + g+ ++g+ g+ T018642_1 2144 WNGEEWCGVEWIGIQWDGMVWSGVQWNGM 2172 22333333333333333333333333333 PP == domain 9 score: 3.6 bits; conditional E-value: 0.0066 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaalggv 78 g+g+ g+ + g+ ++g+ +g+ + g+ + g l g T018642_1 2235 GMGWDGVEWNGVEWSGVEWSGMEWDGMEWSGVELSGL 2271 8999999999999999999999999999999999885 PP == domain 10 score: -2.2 bits; conditional E-value: 0.41 Lamprin 42 glgygglgygglgvaglgvaglgygglgypga 73 g+ + g+ + g+ ++g+ +g+ + g+ + g T018642_1 2357 GMQWSGVEWSGVEWCGVEWSGMEWNGMEWNGM 2388 55566667777777777777777777666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2444 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.77 # Mc/sec: 9080.35 // Query: T018642_2 [L=2444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-34 115.6 0.0 0.29 11.2 0.0 26.4 30 Pentapeptide_4 Pentapeptide repeats (9 copies) 5.3e-05 23.1 6.6 63 3.4 0.0 9.0 9 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 1.3 1.1e+04 54 70 .. 109 125 .. 108 133 .. 0.57 2 ? 0.2 0.0 0.091 7.4e+02 46 71 .. 175 201 .. 166 203 .. 0.80 3 ! 5.1 0.0 0.0028 23 47 70 .. 310 333 .. 306 340 .. 0.88 4 ? -0.1 0.0 0.12 9.4e+02 51 72 .. 367 388 .. 365 391 .. 0.73 5 ? -2.5 0.0 0.63 5.2e+03 45 62 .. 410 427 .. 403 428 .. 0.70 6 ? 0.4 0.0 0.083 6.8e+02 46 70 .. 466 490 .. 464 509 .. 0.78 7 ? 3.2 0.0 0.011 86 34 70 .. 667 703 .. 657 710 .. 0.78 8 ! 4.4 0.0 0.0044 36 43 70 .. 724 751 .. 716 758 .. 0.83 9 ? 0.0 0.0 0.1 8.5e+02 46 69 .. 801 824 .. 800 827 .. 0.74 10 ? -0.1 0.0 0.11 9.1e+02 47 74 .. 860 888 .. 857 889 .. 0.84 11 ? -0.6 0.0 0.17 1.4e+03 45 54 .. 982 991 .. 950 1011 .. 0.54 12 ? 1.0 0.0 0.054 4.4e+02 51 73 .. 1075 1098 .. 1070 1113 .. 0.58 13 ! 4.1 0.0 0.0056 45 46 70 .. 1135 1159 .. 1132 1166 .. 0.70 14 ? 1.0 0.0 0.053 4.3e+02 34 64 .. 1202 1232 .. 1185 1235 .. 0.53 15 ? 0.2 0.0 0.096 7.9e+02 46 72 .. 1244 1271 .. 1242 1278 .. 0.63 16 ? -3.1 0.0 0.98 8e+03 48 70 .. 1307 1329 .. 1305 1332 .. 0.78 17 ? -0.3 0.0 0.13 1.1e+03 45 68 .. 1359 1382 .. 1358 1384 .. 0.84 18 ? -1.9 0.0 0.42 3.4e+03 44 70 .. 1427 1453 .. 1425 1456 .. 0.55 19 ? 2.0 0.0 0.026 2.1e+02 47 74 .. 1485 1513 .. 1464 1537 .. 0.72 20 ! 10.6 0.0 5.2e-05 0.42 42 75 .. 1588 1622 .. 1581 1623 .. 0.87 21 ? -1.1 0.0 0.24 2e+03 49 71 .. 1625 1648 .. 1618 1651 .. 0.65 22 ? 0.0 0.0 0.11 8.6e+02 46 63 .. 1657 1674 .. 1654 1677 .. 0.55 23 ! 11.2 0.0 3.6e-05 0.29 34 68 .. 1772 1806 .. 1734 1821 .. 0.59 24 ? -2.2 0.0 0.5 4.1e+03 53 70 .. 1895 1912 .. 1892 1916 .. 0.45 25 ? -2.1 0.0 0.47 3.8e+03 49 74 .. 1926 1952 .. 1923 1955 .. 0.62 26 ? -1.5 0.0 0.31 2.5e+03 48 70 .. 1988 2010 .. 1982 2017 .. 0.67 27 ? 1.8 0.0 0.03 2.4e+02 44 68 .. 2019 2043 .. 2004 2046 .. 0.71 28 ! 4.3 0.0 0.0049 40 34 71 .. 2148 2186 .. 2132 2190 .. 0.83 29 ! 8.7 0.0 0.00021 1.7 30 70 .. 2218 2258 .. 2208 2265 .. 0.77 30 ! 4.3 0.0 0.005 41 46 73 .. 2366 2393 .. 2364 2396 .. 0.88 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 1.3 Pentapeptide_4 54 krasFsgcdlknvnfsg 70 + +++sg+dl +v+++g T018642_2 109 SGVEWSGVDLIGVEWNG 125 44556666666665554 PP == domain 2 score: 0.2 bits; conditional E-value: 0.091 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.k 71 v++++ +++ + + ++++++v+++g + T018642_2 175 VEWSGKEWNGIGWNEMEWSGVVWNGmE 201 678888888888888888888887644 PP == domain 3 score: 5.1 bits; conditional E-value: 0.0028 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg 70 ++++++++ ++F g+d+++v++++ T018642_2 310 EWNGMEWNGVEFNGMDWSGVEWKE 333 799*****************9974 PP == domain 4 score: -0.1 bits; conditional E-value: 0.12 Pentapeptide_4 51 adlkrasFsgcdlknvnfsgkl 72 ++++ +++sg+++++ +++g++ T018642_2 367 MEWNGMEWSGMEWNGMEWNGEM 388 5677888888888888887654 PP == domain 5 score: -2.5 bits; conditional E-value: 0.63 Pentapeptide_4 45 dvdfaeadlkrasFsgcd 62 ++++++++ +++ g++ T018642_2 410 RKEWNGMQWNGMEWNGME 427 556778888888777765 PP == domain 6 score: 0.4 bits; conditional E-value: 0.083 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 v+f +++++ a++ g+++++ ++s+ T018642_2 466 VEFIGMEWNGAEWNGMEWNGEEWSA 490 5788888888888888887777765 PP == domain 7 score: 3.2 bits; conditional E-value: 0.011 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 s+v+++ + s +++++ +k +++sg++ ++ ++s+ T018642_2 667 SEVEWSGVESSAMEWNGMGWKGMAWSGVERSGLEWSR 703 6788888888889999999999999999988888865 PP == domain 8 score: 4.4 bits; conditional E-value: 0.0044 Pentapeptide_4 43 lsdvdfaeadlkrasFsgcdlknvnfsg 70 +++ ++++ +++r+++sg+++++ ++++ T018642_2 724 VDWMEWTGLEWSRVEWSGVEWNGMEWNA 751 5788999999999999999999999975 PP == domain 9 score: 0.0 bits; conditional E-value: 0.1 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfs 69 v+++++++ +++sg+++ +v+++ T018642_2 801 VELSGVEWCGVEWSGMEWDGVEWN 824 567778888888888888888776 PP == domain 10 score: -0.1 bits; conditional E-value: 0.11 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klkd 74 ++++++ + +++sg + ++v+++g ++++ T018642_2 860 EWNGVECNGMEWSGLECSEVEWNGmEWNG 888 79999999999999999999999778765 PP == domain 11 score: -0.6 bits; conditional E-value: 0.17 Pentapeptide_4 45 dvdfaeadlk 54 + ++++++++ T018642_2 982 WMELNGVQWS 991 3333333333 PP == domain 12 score: 1.0 bits; conditional E-value: 0.054 Pentapeptide_4 51 adlkrasFsgcdlknvnfsg.klk 73 ++++ +++sg+++++v+ sg +++ T018642_2 1075 MQWNGIEWSGVEWSGVEYSGrEWN 1098 455555555555555554443333 PP == domain 13 score: 4.1 bits; conditional E-value: 0.0056 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 +++++++++ +++ g++++ ++++ T018642_2 1135 AEWNGMEWNGMQWNGMQWNAMEWNK 1159 6778888888888888888777743 PP == domain 14 score: 1.0 bits; conditional E-value: 0.053 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlk 64 + ++++ + s v+++ ++++ + +sg++++ T018642_2 1202 DGMEWNGVEWSVVEWSVMEWNGMGWSGMEWS 1232 4444555555555555555555555555554 PP == domain 15 score: 0.2 bits; conditional E-value: 0.096 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.kl 72 vd+ e++++ +++ g++ ++ +++g ++ T018642_2 1244 VDWIEVEWSGVEWNGMEGSGGRWRGmEW 1271 5677777777777777666666655444 PP == domain 16 score: -3.1 bits; conditional E-value: 0.98 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfsg 70 + +++++r++ sg d+++v++sg T018642_2 1307 WGGMEWSRMERSGLDWSGVHWSG 1329 67788888888899999888875 PP == domain 17 score: -0.3 bits; conditional E-value: 0.13 Pentapeptide_4 45 dvdfaeadlkrasFsgcdlknvnf 68 v++++++++ + ++g+ ++ v++ T018642_2 1359 RVEWSGMEWNGMGWKGMAWSVVEW 1382 589999999999999999988877 PP == domain 18 score: -1.9 bits; conditional E-value: 0.42 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnfsg 70 ++++ +++l+ ++ g+++ +v++sg T018642_2 1427 RSCQKKGMELNGGEWNGMEWGGVEWSG 1453 455555566666666666666666654 PP == domain 19 score: 2.0 bits; conditional E-value: 0.026 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klkd 74 ++ +++l + +sg+++++ +++g ++++ T018642_2 1485 EWIGIQLDGMIWSGVEWNGMEWNGmEWNG 1513 45555555555555555555555444443 PP == domain 20 score: 10.6 bits; conditional E-value: 5.2e-05 Pentapeptide_4 42 llsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 +l+ v++++++++ a++sg+++++ +++g +++++ T018642_2 1588 ELNRVQWNGVQWSGAEWSGVEWNGMEWDGiEWYEV 1622 6899999999********99999999999888875 PP == domain 21 score: -1.1 bits; conditional E-value: 0.24 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.k 71 +++++++ ++ g++l++ +sg + T018642_2 1625 NGVEWRDEEWNGMELEGMGWSGvE 1648 566667777777777777666544 PP == domain 22 score: 0.0 bits; conditional E-value: 0.11 Pentapeptide_4 46 vdfaeadlkrasFsgcdl 63 v++++++++ +++s++d+ T018642_2 1657 VEWNGMQWNGVEWSRVDW 1674 555666666666655554 PP == domain 23 score: 11.2 bits; conditional E-value: 3.6e-05 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 + ++++ ++ v++++++++ +++ g++++++++ T018642_2 1772 DGMEWSGVEFTGVQWNGMEWNGMEWNGMEWNGIQW 1806 23333333333333444444444444444444444 PP == domain 24 score: -2.2 bits; conditional E-value: 0.5 Pentapeptide_4 53 lkrasFsgcdlknvnfsg 70 + +++sg+++++ ++sg T018642_2 1895 WDGLEWSGVEWSELEWSG 1912 444444444444444433 PP == domain 25 score: -2.1 bits; conditional E-value: 0.47 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.klkd 74 ++++++ ++sg++ ++v+++g ++++ T018642_2 1926 NGMEWNGGEWSGVEGNGVEWNGvEWNG 1952 566677777777777777776655554 PP == domain 26 score: -1.5 bits; conditional E-value: 0.31 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfsg 70 +++++++ +++sg++ ++++++g T018642_2 1988 WNGMEWSGLEWSGVESSGTEWNG 2010 56677777777777777777665 PP == domain 27 score: 1.8 bits; conditional E-value: 0.03 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnf 68 s v ++e+++ r+++sg+++ + ++ T018642_2 2019 SGVGWSECQWIRVEWSGMEWDGREW 2043 4467788888888888887776655 PP == domain 28 score: 4.3 bits; conditional E-value: 0.0049 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.k 71 s v+++ +++ ++++++ + +++ g+++++ +++g + T018642_2 2148 SGVEWSGLEFNGMEWYGVECSGMEWNGMEWNGMEWRGeE 2186 567788888899999999999999999999999998745 PP == domain 29 score: 8.7 bits; conditional E-value: 0.00021 Pentapeptide_4 30 eanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 ++ +s v+++ + + ++++++++ +++sg+++++v+++g T018642_2 2218 GVEFSGVEWSGVECNVMEWDGMEWNGMEWSGVEWNGVEWNG 2258 56678888888888888888888888888888888888876 PP == domain 30 score: 4.3 bits; conditional E-value: 0.005 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsgklk 73 v++++++++ +++ g+++++ +++g++k T018642_2 2366 VEWSGVEWSGVEWNGMEWNGMEWHGEMK 2393 7899999999999999999999998875 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.4 0.0 0.0078 63 43 81 .. 679 717 .. 668 732 .. 0.73 2 ? 2.3 0.1 0.016 1.3e+02 42 58 .. 1089 1105 .. 1068 1130 .. 0.45 3 ? -3.4 0.0 0.94 7.7e+03 42 74 .. 1198 1230 .. 1196 1234 .. 0.63 4 ? -4.0 0.0 1.5 1.2e+04 47 72 .. 1304 1329 .. 1303 1331 .. 0.47 5 ? -0.9 0.1 0.17 1.4e+03 36 52 .. 1487 1503 .. 1462 1522 .. 0.42 6 ? 2.7 0.0 0.012 1e+02 35 76 .. 1761 1802 .. 1747 1812 .. 0.62 7 ! 3.4 0.0 0.0077 63 39 80 .. 1982 2023 .. 1976 2046 .. 0.78 8 ? 1.7 0.6 0.025 2e+02 42 74 .. 2134 2166 .. 2109 2185 .. 0.65 9 ? -0.4 0.0 0.12 9.4e+02 45 72 .. 2236 2263 .. 2218 2266 .. 0.64 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.0078 Lamprin 43 lgygglgygglgvaglgvaglgygglgypgaalggvyth 81 + + g+g+ g+ ++g+ +gl + l + g g+ h T018642_2 679 MEWNGMGWKGMAWSGVERSGLEWSRLAWSGMEWDGIECH 717 566777777777777777777777777777777666655 PP == domain 2 score: 2.3 bits; conditional E-value: 0.016 Lamprin 42 glgygglgygglgvagl 58 g+ y g + g+g+ g+ T018642_2 1089 GVEYSGREWNGMGWNGM 1105 22222222222222222 PP == domain 3 score: -3.4 bits; conditional E-value: 0.94 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaa 74 g+ y g+ + g+ ++ + + + + g+g+ g T018642_2 1198 GVKYDGMEWNGVEWSVVEWSVMEWNGMGWSGME 1230 566777777777777766666667777766654 PP == domain 4 score: -4.0 bits; conditional E-value: 1.5 Lamprin 47 glgygglgvaglgvaglgygglgypg 72 g+ +gg+ ++ + +gl + g+ + g T018642_2 1304 GMEWGGMEWSRMERSGLDWSGVHWSG 1329 44455555555555555555544443 PP == domain 5 score: -0.9 bits; conditional E-value: 0.17 Lamprin 36 lghpvgglgygglgygg 52 +g + g+ + g+ + g T018642_2 1487 IGIQLDGMIWSGVEWNG 1503 12222222222222222 PP == domain 6 score: 2.7 bits; conditional E-value: 0.012 Lamprin 35 flghpvgglgygglgygglgvaglgvaglgygglgypgaalg 76 ++g g+ + g+ + g+ ++g+ g+ + g+ + g T018642_2 1761 WVGMEWSGMKWDGMEWSGVEFTGVQWNGMEWNGMEWNGMEWN 1802 555555666666666666666666666666666665555444 PP == domain 7 score: 3.4 bits; conditional E-value: 0.0077 Lamprin 39 pvgglgygglgygglgvaglgvaglgygglgypgaalggvyt 80 g+ + g+ + gl ++g+ +g + g+g+ a gv T018642_2 1982 EWNGIWWNGMEWSGLEWSGVESSGTEWNGIGWNRMACSGVGW 2023 556888899999999999999999999999999999888755 PP == domain 8 score: 1.7 bits; conditional E-value: 0.025 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaa 74 g+ +gg+ g+ +g+ +gl + g+ + g T018642_2 2134 GMEWGGVERNGMERSGVEWSGLEFNGMEWYGVE 2166 445555555555555555555555555554443 PP == domain 9 score: -0.4 bits; conditional E-value: 0.12 Lamprin 45 ygglgygglgvaglgvaglgygglgypg 72 + g+ + g+ ++g+ g+ + g+g+ g T018642_2 2236 WDGMEWNGMEWSGVEWNGVEWNGMGWNG 2263 5566666666666666666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2444 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.82 # Mc/sec: 8526.67 // Query: T018642_3 [L=2443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-42 141.4 0.0 0.063 13.3 0.0 25.7 28 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.16 11.8 16.8 14 5.5 0.0 9.9 16 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 0.056 4.6e+02 47 73 .. 80 107 .. 79 116 .. 0.65 2 ! 6.1 0.0 0.0013 11 31 70 .. 243 282 .. 224 285 .. 0.67 3 ! 8.7 0.0 0.00021 1.7 41 74 .. 350 384 .. 335 386 .. 0.80 4 ! 13.3 0.0 7.8e-06 0.063 41 75 .. 424 459 .. 412 491 .. 0.64 5 ? -1.5 0.0 0.32 2.6e+03 47 67 .. 584 604 .. 575 609 .. 0.44 6 ! 6.1 0.0 0.0013 11 44 68 .. 665 689 .. 647 693 .. 0.59 7 ? 2.0 0.0 0.026 2.1e+02 46 70 .. 725 749 .. 722 759 .. 0.61 8 ? -1.1 0.0 0.24 1.9e+03 47 65 .. 805 823 .. 804 828 .. 0.60 9 ! 7.5 0.0 0.0005 4 37 72 .. 848 884 .. 835 888 .. 0.60 10 ? -3.2 0.0 1.1 8.6e+03 49 68 .. 939 953 .. 920 979 .. 0.58 11 ? 0.7 0.0 0.065 5.3e+02 47 70 .. 987 1010 .. 986 1012 .. 0.86 12 ! 4.8 0.0 0.0033 27 34 77 .] 1086 1130 .. 1074 1134 .. 0.76 13 ! 8.0 0.0 0.00035 2.9 46 74 .. 1227 1256 .. 1220 1259 .. 0.87 14 ! 6.4 0.0 0.001 8.5 5 72 .. 1307 1375 .. 1279 1378 .. 0.77 15 ? -3.3 0.0 1.2 9.5e+03 52 69 .. 1384 1401 .. 1380 1407 .. 0.41 16 ? -0.6 0.0 0.16 1.3e+03 46 64 .. 1497 1515 .. 1495 1526 .. 0.73 17 ? -0.9 0.0 0.21 1.7e+03 50 72 .. 1604 1627 .. 1591 1646 .. 0.54 18 ? -2.1 0.0 0.48 3.9e+03 46 69 .. 1645 1668 .. 1633 1672 .. 0.54 19 ? -3.7 0.0 1.6 1.3e+04 54 66 .. 1717 1729 .. 1711 1733 .. 0.38 20 ? 2.8 0.0 0.014 1.1e+02 46 65 .. 1747 1766 .. 1742 1768 .. 0.54 21 ? -0.5 0.0 0.15 1.3e+03 35 67 .. 1776 1808 .. 1771 1816 .. 0.71 22 ! 10.8 0.0 4.5e-05 0.37 11 65 .. 1896 1950 .. 1879 1960 .. 0.44 23 ? -2.1 0.0 0.47 3.9e+03 56 69 .. 1989 2002 .. 1982 2009 .. 0.56 24 ? -0.3 0.0 0.13 1.1e+03 36 71 .. 2019 2055 .. 2013 2057 .. 0.81 25 ? 0.0 0.0 0.1 8.5e+02 46 68 .. 2103 2125 .. 2095 2128 .. 0.50 26 ! 7.7 0.0 0.00042 3.5 39 74 .. 2141 2177 .. 2130 2187 .. 0.67 27 ! 4.2 0.0 0.0054 44 40 69 .. 2241 2270 .. 2223 2278 .. 0.68 28 ! 3.7 0.0 0.0075 61 46 70 .. 2359 2383 .. 2349 2390 .. 0.46 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.056 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klk 73 ++++++++ + +sg++ ++v+++g + + T018642_3 80 EWDGMEWNGVDWSGVERSGVKWNGmECN 107 5667777777777777777777654444 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0013 Pentapeptide_4 31 anlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 ++ + v+++ + + ++ e++++ +++sg+++++ ++sg T018642_3 243 CRRKGVEWKGLEWNGMEWIEVEWSGIEWSGVQWNGMKWSG 282 4446666666666667777777777777777777777765 PP == domain 3 score: 8.7 bits; conditional E-value: 0.00021 Pentapeptide_4 41 cllsdvdfaeadlkrasFsgcdlknvnfsg.klkd 74 + s d+++++++r+++ g+++++v+++g ++++ T018642_3 350 EEWSGMDWSGVEWSRVEWNGMEWSGVEWNGmEWNG 384 55566799999999999999999999999878765 PP == domain 4 score: 13.3 bits; conditional E-value: 7.8e-06 Pentapeptide_4 41 cllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 + + vd+++++++++++sg+++++v+++g +l+d+ T018642_3 424 MEWNGVDWSGVEWSEVEWSGVEWRGVEWDGmELNDV 459 444445555555555555555555555554455443 PP == domain 5 score: -1.5 bits; conditional E-value: 0.32 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvn 67 +++++d+++++ g+ +++ + T018642_3 584 EWSGVDWSEMESIGMRWSEME 604 344444444433333333333 PP == domain 6 score: 6.1 bits; conditional E-value: 0.0013 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnf 68 + v++++++++r+++sg+++ + ++ T018642_3 665 NGVKWSGVEWSRVQWSGMEWDGKEW 689 3345555555555555555544444 PP == domain 7 score: 2.0 bits; conditional E-value: 0.026 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 + +++ d++ +++ g+++++ +++g T018642_3 725 TGWSGLDWSGVEWNGVEWNGMEWNG 749 5566666666666666666666654 PP == domain 8 score: -1.1 bits; conditional E-value: 0.24 Pentapeptide_4 47 dfaeadlkrasFsgcdlkn 65 ++++++++ +++ g+++++ T018642_3 805 EWSGVEWNGVEWNGMEWNG 823 5666666666666666554 PP == domain 9 score: 7.5 bits; conditional E-value: 0.0005 Pentapeptide_4 37 nFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.kl 72 +++ + + vd+++++++ +++ g+d++ v++sg ++ T018642_3 848 EWSGVEWNRVDWSGMEWNVMEWNGVDWSAVKWSGmEW 884 3445555666777777777777777777777765555 PP == domain 10 score: -3.2 bits; conditional E-value: 1.1 Pentapeptide_4 49 aeadlkrasFsgcdlknvnf 68 ++ +++sg++ ++v++ T018642_3 939 NG-----MEWSGVERSGVEW 953 22.....3333333333333 PP == domain 11 score: 0.7 bits; conditional E-value: 0.065 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg 70 +f+++ ++ ++++g++l++ ++sg T018642_3 987 EFSGVGWRGMEYTGVELNGMEWSG 1010 799999999999999999999976 PP == domain 12 score: 4.8 bits; conditional E-value: 0.0033 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 s v+++ + s ++++++++ + +s +++++ +++g +++ ++F T018642_3 1086 SGVEWSIVEGSGMEWDGMEWRGIHWSVVEWNGMEWNGmEWNAVEF 1130 567777777778888888888888888888888888767777666 PP == domain 13 score: 8.0 bits; conditional E-value: 0.00035 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkd 74 v++++++++r+++s+++l++ +++g ++++ T018642_3 1227 VEWNGVEWSRLNWSRVELTGLKWNGvEWNG 1256 7999******************99988775 PP == domain 14 score: 6.4 bits; conditional E-value: 0.001 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.kl 72 + +n++ +++v+ ++ ++ + ++ s+++++ + + v++ +++l+r+ + g+++++ +++g ++ T018642_3 1307 GVEWNGVEWNGVDWIGVECIGVEWSPVKWSEMEWKGMEWHVVEWGGVNLSRVGWNGVEWSGMEWDGrEW 1375 566677777777777777777777777777888888888888888888888888888888888876565 PP == domain 15 score: -3.3 bits; conditional E-value: 1.2 Pentapeptide_4 52 dlkrasFsgcdlknvnfs 69 ++ r+++ g+ +++ +++ T018642_3 1384 EWVRMELNGMVWNGMEWN 1401 344444444444444443 PP == domain 16 score: -0.6 bits; conditional E-value: 0.16 Pentapeptide_4 46 vdfaeadlkrasFsgcdlk 64 v++++++++ +++ g++l+ T018642_3 1497 VEWNGMEWNGMEWNGMELE 1515 5778888888888888776 PP == domain 17 score: -0.9 bits; conditional E-value: 0.21 Pentapeptide_4 50 eadlkrasFsgcdlknvnfsg.kl 72 +++++ +++ g++ ++ +++g +l T018642_3 1604 GVEWSGMEWNGMESNGMKWRGmEL 1627 334444444444444444333233 PP == domain 18 score: -2.1 bits; conditional E-value: 0.48 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfs 69 v++++++ + +++ g++ ++ ++s T018642_3 1645 VEWSGVESSGVEWNGMECNGMEWS 1668 445555555555555555555554 PP == domain 19 score: -3.7 bits; conditional E-value: 1.6 Pentapeptide_4 54 krasFsgcdlknv 66 k ++++g+++++ T018642_3 1717 KGMEWKGVEWNGM 1729 3333333333333 PP == domain 20 score: 2.8 bits; conditional E-value: 0.014 Pentapeptide_4 46 vdfaeadlkrasFsgcdlkn 65 v++++++++r+++sg ++++ T018642_3 1747 VQWNGMEWSRVQWSGLEWNG 1766 55666666666666666555 PP == domain 21 score: -0.5 bits; conditional E-value: 0.15 Pentapeptide_4 35 nvnFdkcllsdvdfaeadlkrasFsgcdlknvn 67 v++++ + + +++++++ +++ g++ ++v+ T018642_3 1776 GVEWSSQECNGMGWNGMEWNGMEWNGMEYNGVE 1808 566666677777788888888888887777665 PP == domain 22 score: 10.8 bits; conditional E-value: 4.5e-05 Pentapeptide_4 11 cklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 ++++v+ s ++ ++ ++t+ + ++v+++ + + + ++++l+++++sg+++++ T018642_3 1896 MDWNGVEWSGVNWNGVDLTGLQWNEVEWNAMEWNGMEGSGVELREMEWSGMEWNG 1950 3333333333333333333333333333333333333333333333333333333 PP == domain 23 score: -2.1 bits; conditional E-value: 0.47 Pentapeptide_4 56 asFsgcdlknvnfs 69 +++sg+d+++v++s T018642_3 1989 MEWSGVDWSGVEWS 2002 44555555555543 PP == domain 24 score: -0.3 bits; conditional E-value: 0.13 Pentapeptide_4 36 vnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.k 71 v++d ++s + +++++++ ++ g++ ++v +sg + T018642_3 2019 VEWDGVNVSGLGWNGVEWNGMEGNGMECSGVDWSGlE 2055 6788889999999999999999888888888888755 PP == domain 25 score: 0.0 bits; conditional E-value: 0.1 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnf 68 +++++++ + +sg+++++ + T018642_3 2103 IEWRGMEWDGVGWSGVEWRGLDL 2125 34444445555555544444443 PP == domain 26 score: 7.7 bits; conditional E-value: 0.00042 Pentapeptide_4 39 dkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkd 74 + + + v ++++d++++ + g++++ v+++g ++++ T018642_3 2141 NGMEWRGVVWSGVDWNSMGWNGMEWSAVEWNGmEWNG 2177 4555556677777777777777777777776656554 PP == domain 27 score: 4.2 bits; conditional E-value: 0.0054 Pentapeptide_4 40 kcllsdvdfaeadlkrasFsgcdlknvnfs 69 + s v++++++++ + + g+++++v++ T018642_3 2241 GMEWSGVEWSGMEWNGMGWDGMEWSGVEWI 2270 444455677777777777777777777765 PP == domain 28 score: 3.7 bits; conditional E-value: 0.0075 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 v+++ ++++ + +sg+++++ +++g T018642_3 2359 VEWSRVEWSGVVWSGVEWNGMEWNG 2383 3333333333333333333333333 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 0.51 4.2e+03 40 73 .. 416 449 .. 404 459 .. 0.57 2 ? -3.7 0.0 1.2 1e+04 45 62 .. 471 488 .. 463 493 .. 0.41 3 ? -3.0 0.0 0.71 5.8e+03 44 67 .. 726 749 .. 721 752 .. 0.46 4 ? -0.6 0.6 0.14 1.1e+03 45 67 .. 988 1010 .. 968 1030 .. 0.68 5 ? -3.0 0.0 0.72 5.9e+03 47 68 .. 1137 1158 .. 1129 1163 .. 0.65 6 ? -3.9 0.1 1.4 1.1e+04 48 74 .. 1237 1263 .. 1226 1272 .. 0.49 7 ? -3.7 0.0 1.1 9.4e+03 48 72 .. 1348 1372 .. 1341 1377 .. 0.57 8 ? -2.5 0.2 0.5 4.1e+03 46 63 .. 1465 1482 .. 1440 1490 .. 0.46 9 ? -2.4 0.0 0.47 3.9e+03 41 73 .. 1598 1630 .. 1593 1637 .. 0.59 10 ? 1.5 0.0 0.03 2.4e+02 51 77 .. 1785 1811 .. 1771 1820 .. 0.49 11 ? -3.3 0.0 0.92 7.5e+03 42 66 .. 1895 1919 .. 1890 1930 .. 0.70 12 ? -2.3 0.0 0.44 3.6e+03 42 58 .. 1983 1999 .. 1980 2008 .. 0.56 13 ? 4.0 0.0 0.005 41 36 69 .. 2022 2055 .. 2016 2057 .. 0.86 14 ? -0.9 0.0 0.16 1.3e+03 41 66 .. 2101 2126 .. 2093 2128 .. 0.49 15 ? -1.5 0.0 0.26 2.1e+03 41 68 .. 2151 2178 .. 2133 2191 .. 0.51 16 ? 5.5 0.0 0.0018 14 42 74 .. 2236 2268 .. 2234 2287 .. 0.67 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.51 Lamprin 40 vgglgygglgygglgvaglgvaglgygglgypga 73 g+ + g+ + g+ ++g+ + + + g+ + g T018642_3 416 CSGMEWNGMEWNGVDWSGVEWSEVEWSGVEWRGV 449 4455555555555555555555555555554444 PP == domain 2 score: -3.7 bits; conditional E-value: 1.2 Lamprin 45 ygglgygglgvaglgvag 62 + g+ g+g++g+ +g T018642_3 471 WSGMERNGMGWSGMERSG 488 333333333333333333 PP == domain 3 score: -3.0 bits; conditional E-value: 0.71 Lamprin 44 gygglgygglgvaglgvaglgygg 67 g+ gl + g+ + g+ g+ + g T018642_3 726 GWSGLDWSGVEWNGVEWNGMEWNG 749 444444444444444444444433 PP == domain 4 score: -0.6 bits; conditional E-value: 0.14 Lamprin 45 ygglgygglgvaglgvaglgygg 67 + g+g+ g+ ++g+ + g+ + g T018642_3 988 FSGVGWRGMEYTGVELNGMEWSG 1010 34455555555555554444444 PP == domain 5 score: -3.0 bits; conditional E-value: 0.72 Lamprin 47 glgygglgvaglgvaglgyggl 68 g+g+ g+ g+ g+ + g+ T018642_3 1137 GMGWNGMECNGMECNGMQWNGI 1158 6666666666666666666665 PP == domain 6 score: -3.9 bits; conditional E-value: 1.4 Lamprin 48 lgygglgvaglgvaglgygglgypgaa 74 l + + ++gl g+ + g+ + g T018642_3 1237 LNWSRVELTGLKWNGVEWNGMEWRGVE 1263 444444444444444444444444443 PP == domain 7 score: -3.7 bits; conditional E-value: 1.1 Lamprin 48 lgygglgvaglgvaglgygglgypg 72 + +gg+ ++ +g g+ + g+ + g T018642_3 1348 VEWGGVNLSRVGWNGVEWSGMEWDG 1372 4556666666666666666655544 PP == domain 8 score: -2.5 bits; conditional E-value: 0.5 Lamprin 46 gglgygglgvaglgvagl 63 g+ +gg+ g+ +g+ T018642_3 1465 SGMEWGGVERNGMERSGV 1482 233344444444444444 PP == domain 9 score: -2.4 bits; conditional E-value: 0.47 Lamprin 41 gglgygglgygglgvaglgvaglgygglgypga 73 g+ g+ + g+ + g+ g+ + g+ g T018642_3 1598 SGVEQSGVEWSGMEWNGMESNGMKWRGMELSGG 1630 455556666666666666666666666655554 PP == domain 10 score: 1.5 bits; conditional E-value: 0.03 Lamprin 51 gglgvaglgvaglgygglgypgaalgg 77 g+g+ g+ g+ + g+ y g g T018642_3 1785 NGMGWNGMEWNGMEWNGMEYNGVECNG 1811 333444444444444444444333333 PP == domain 11 score: -3.3 bits; conditional E-value: 0.92 Lamprin 42 glgygglgygglgvaglgvaglgyg 66 g+ + g+ + g+ + g+ ++gl + T018642_3 1895 GMDWNGVEWSGVNWNGVDLTGLQWN 1919 6667777777777777777777655 PP == domain 12 score: -2.3 bits; conditional E-value: 0.44 Lamprin 42 glgygglgygglgvagl 58 g+ ygg+ + g+ ++g+ T018642_3 1983 GMEYGGMEWSGVDWSGV 1999 44455555555544443 PP == domain 13 score: 4.0 bits; conditional E-value: 0.005 Lamprin 36 lghpvgglgygglgygglgvaglgvaglgygglg 69 g v glg+ g+ + g+ g+ +g+ + gl T018642_3 2022 DGVNVSGLGWNGVEWNGMEGNGMECSGVDWSGLE 2055 5778999999999999999999999999999986 PP == domain 14 score: -0.9 bits; conditional E-value: 0.16 Lamprin 41 gglgygglgygglgvaglgvaglgyg 66 g+ + g+ + g+g++g+ gl T018642_3 2101 NGIEWRGMEWDGVGWSGVEWRGLDLS 2126 44555555555555555544444433 PP == domain 15 score: -1.5 bits; conditional E-value: 0.26 Lamprin 41 gglgygglgygglgvaglgvaglgyggl 68 g+ + +g+ g+ ++ + g+ + g+ T018642_3 2151 SGVDWNSMGWNGMEWSAVEWNGMEWNGM 2178 3344444444444444444444444444 PP == domain 16 score: 5.5 bits; conditional E-value: 0.0018 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaa 74 g+g+ g+ + g+ ++g+ g+g+ g+ + g T018642_3 2236 GMGWSGMEWSGVEWSGMEWNGMGWDGMEWSGVE 2268 666666666666666666666666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 30 (0.00183981); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 9843.67 // Query: T279346_1 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 8165.29 // Query: T279346_2 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 8520.30 // Query: T279346_3 [L=2055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 8165.29 // Query: T256199_1 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.88 # Mc/sec: 7100.06 // Query: T256199_2 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 9055.15 // Query: T256199_3 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 9325.45 // Query: T267536_1 [L=1167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 5473.10 // Query: T267536_2 [L=1167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.73 # Mc/sec: 4573.41 // Query: T267536_3 [L=1167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.72 # Mc/sec: 4636.93 // Query: T227651_1 [L=4466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1028 (0.0630443); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.43s 00:00:02.55 Elapsed: 00:00:00.80 # Mc/sec: 15970.58 // Query: T227651_2 [L=4466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 11.9 1.6 2.3e+02 1.8 0.0 5.2 5 Peptidase_M24_C C-terminal region of peptidase_M24 Domain annotation for each model (and alignments): >> Peptidase_M24_C C-terminal region of peptidase_M24 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.014 2.3e+02 29 55 .. 1583 1609 .. 1578 1618 .. 0.83 2 ? 1.1 0.0 0.024 3.9e+02 31 48 .. 1637 1654 .. 1613 1691 .. 0.68 3 ? 1.3 0.0 0.02 3.3e+02 28 53 .. 1794 1819 .. 1790 1828 .. 0.80 4 ? -1.4 0.0 0.14 2.3e+03 29 48 .. 1847 1866 .. 1836 1872 .. 0.85 5 ? -0.5 0.0 0.075 1.2e+03 31 51 .. 1875 1895 .. 1871 1903 .. 0.84 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.014 HHHHHHHHHHHHHHHHHHHHTTH.HHH CS Peptidase_M24_C 29 awLnaYhakvleklsplLeeeseeleW 55 + L Y ++v+ kl+ L+++s+++++ T227651_2 1583 NLLQGYAKTVRSKLTTSLRQDSAVKTY 1609 67999*************999866655 PP == domain 2 score: 1.1 bits; conditional E-value: 0.024 HHHHHHHHHHHHHHHHHH CS Peptidase_M24_C 31 LnaYhakvleklsplLee 48 L Y ++v+ kl+ +L + T227651_2 1637 LQGYTKTVWSKLTTRLHQ 1654 556666666666666633 PP == domain 3 score: 1.3 bits; conditional E-value: 0.02 HHHHHHHHHHHHHHHHHHHHHTTH.H CS Peptidase_M24_C 28 iawLnaYhakvleklsplLeeeseel 53 + L Y ++v+ kl+ L+++s ++ T227651_2 1794 QNLLQGYAKTVRSKLTTSLRQDSVVK 1819 678999*************9987444 PP == domain 4 score: -1.4 bits; conditional E-value: 0.14 HHHHHHHHHHHHHHHHHHHH CS Peptidase_M24_C 29 awLnaYhakvleklsplLee 48 + L Y ++v+ kl+ L++ T227651_2 1847 NLLQGYTKTVWSKLTTSLRQ 1866 57899**********99954 PP == domain 5 score: -0.5 bits; conditional E-value: 0.075 HHHHHHHHHHHHHHHHHHTTH CS Peptidase_M24_C 31 LnaYhakvleklsplLeeese 51 L Y ++v kl+ +L+++s+ T227651_2 1875 LQGYTKTVQSKLTTRLRQDSA 1895 789*************99875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1199 (0.0735312); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.23u 0.44s 00:00:02.67 Elapsed: 00:00:00.84 # Mc/sec: 15210.08 // Query: T227651_3 [L=4466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0065 16.4 14.2 23 4.9 0.1 7.9 9 Med28 Mediator complex subunit 28 Domain annotation for each model (and alignments): >> Med28 Mediator complex subunit 28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.38 6.3e+03 62 84 .. 1428 1447 .. 1395 1448 .. 0.67 2 ? 1.8 0.0 0.013 2.2e+02 61 96 .. 1468 1500 .. 1456 1510 .. 0.81 3 ? 1.6 0.1 0.015 2.4e+02 68 96 .. 1513 1541 .. 1504 1552 .. 0.81 4 ? 2.1 0.0 0.01 1.7e+02 61 96 .. 1550 1582 .. 1544 1601 .. 0.84 5 ? 1.0 0.0 0.023 3.8e+02 56 95 .. 1594 1633 .. 1582 1659 .. 0.79 6 ! 2.5 0.1 0.0078 1.3e+02 56 96 .. 1672 1712 .. 1659 1722 .. 0.79 7 ? 1.5 0.0 0.016 2.7e+02 61 96 .. 1721 1753 .. 1715 1764 .. 0.83 8 ? 1.1 0.0 0.021 3.5e+02 57 96 .. 1807 1846 .. 1794 1878 .. 0.71 9 ! 4.9 0.1 0.0014 23 56 96 .. 1884 1924 .. 1863 1936 .. 0.79 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.38 Med28 62 Hlqktseqlatqlkalrekgqnv 84 ++ +l+t+l++ r+ gqn+ T227651_3 1428 TVR---SKLTTRLRSPRQCGQNL 1447 333...48999*********996 PP == domain 2 score: 1.8 bits; conditional E-value: 0.013 Med28 61 kHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +q+ +l+t+l++ r+ gqn++ ++ ds++ T227651_3 1468 KTVQS---KLTTRLRSPRQCGQNLLQGYAHQDSAVK 1500 44455...89***************99999999985 PP == domain 3 score: 1.6 bits; conditional E-value: 0.015 Med28 68 eqlatqlkalrekgqnvfgdgtkidstid 96 +l+t+l++ r+ gqn++ ++ ds + T227651_3 1513 SKLTTRLRSTRQCGQNLLQGYAHQDSVVK 1541 489***************99999999885 PP == domain 4 score: 2.1 bits; conditional E-value: 0.01 Med28 61 kHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +++ +l+t+l+ r+ gqn++ ++ dsti T227651_3 1550 KTVRS---KLTTRLRQPRQCGQNLLQGYANQDSTIK 1582 44444...8*************************96 PP == domain 5 score: 1.0 bits; conditional E-value: 0.023 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidsti 95 ++ll+ + + +l+t+l++ r+ gqn++ ++ +s++ T227651_3 1594 QNLLQVYAKTVRSKLTTRLRSPRQCGQNLLQGYANQESAV 1633 45677777777789**************987777766666 PP == domain 6 score: 2.5 bits; conditional E-value: 0.0078 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ ds+i T227651_3 1672 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSAIK 1712 46777777777779****************99999999986 PP == domain 7 score: 1.5 bits; conditional E-value: 0.016 Med28 61 kHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +++ +l+t+l++ r+ gqn++ ++ ds+i T227651_3 1721 KTVRS---KLTTRLRSPRQCGQNLLQGYAHQDSAIK 1753 44444...8****************99999999985 PP == domain 8 score: 1.1 bits; conditional E-value: 0.021 Med28 57 ellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 +ll+ + + +l+t+l++ r+ gqn++ ++ +s++ T227651_3 1807 NLLQVYAKTVWSKLTTRLRSPRQCGQNLLQGYANQESAVK 1846 5677777777789**************9988888888775 PP == domain 9 score: 4.9 bits; conditional E-value: 0.0014 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ dsti T227651_3 1884 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSTIK 1924 45777777777789*************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 957 (0.0586901); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.98u 0.37s 00:00:02.35 Elapsed: 00:00:00.79 # Mc/sec: 16172.74 // Query: T278131_1 [L=2220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.73 # Mc/sec: 8700.06 // Query: T278131_2 [L=2220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.76 # Mc/sec: 8356.64 // Query: T278131_3 [L=2219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.84 9.5 4.6 0.39 10.6 0.7 2.6 2 cEGF Complement Clr-like EGF-like Domain annotation for each model (and alignments): >> cEGF Complement Clr-like EGF-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.2 0.18 2.9e+03 5 11 .. 55 61 .. 51 62 .. 0.82 2 ? 10.6 0.7 2.4e-05 0.39 2 12 .. 1499 1509 .. 1498 1524 .. 0.87 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.18 E-STTEE CS cEGF 5 sCppGYk 11 +C+ G++ T278131_3 55 TCRHGFT 61 7*****8 PP == domain 2 score: 10.6 bits; conditional E-value: 2.4e-05 EEEE-STTEEE CS cEGF 2 YrCsCppGYkl 12 YrCsC GY+ T278131_3 1499 YRCSCLRGYTG 1509 9********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 9618.46 // Query: T090253_1 [L=1946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 8979.31 // Query: T090253_2 [L=1946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 7626.27 // Query: T090253_3 [L=1946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 7626.27 // Query: T354537_1 [L=886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3899.53 // Query: T354537_2 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 3955.99 // Query: T354537_3 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.037 13.9 0.0 0.09 12.7 0.0 1.6 1 DUF478 Protein of unknown function (DUF478) Domain annotation for each model (and alignments): >> DUF478 Protein of unknown function (DUF478) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 5.5e-06 0.09 7 53 .. 266 312 .. 259 318 .. 0.88 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 5.5e-06 DUF478 7 tytnPvlfWGvfevrGtskGvGviltrffwvfsgrervlkrssylvi 53 +t ++fWGv e G + + v +r w g lkrss+l + T354537_3 266 HHTKSLIFWGVVEGGGGTGSLSVSQARVQWRNYGPTPGLKRSSHLSL 312 579999*************************************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 3778.86 // Query: T110893_1 [L=263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.59 # Mc/sec: 1275.25 // Query: T110893_2 [L=263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1233.44 // Query: T110893_3 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-09 35.9 0.3 1.7e-08 35.1 0.3 1.3 1 Lbh Cardiac transcription factor regulator, Development Domain annotation for each model (and alignments): >> Lbh Cardiac transcription factor regulator, Developmental protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.1 0.3 1.1e-12 1.7e-08 55 80 .. 111 136 .. 104 142 .. 0.93 Alignments for each domain: == domain 1 score: 35.1 bits; conditional E-value: 1.1e-12 Lbh 55 trLPSiVVEasevgeeesgelrwPhe 80 rLPSiVVE+se +esgelrwP e T110893_3 111 QRLPSIVVEPSEADPVESGELRWPLE 136 59**********************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.60 # Mc/sec: 1249.23 // Query: T256209_1 [L=2598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.76 # Mc/sec: 9779.52 // Query: T256209_2 [L=2598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.75 # Mc/sec: 9909.92 // Query: T256209_3 [L=2598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.83 # Mc/sec: 8954.74 // Query: T261848_1 [L=5360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.41s 00:00:02.29 Elapsed: 00:00:00.86 # Mc/sec: 17830.29 // Query: T261848_2 [L=5359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.44s 00:00:02.18 Elapsed: 00:00:00.85 # Mc/sec: 18036.69 // Query: T261848_3 [L=5359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.39s 00:00:02.15 Elapsed: 00:00:00.77 # Mc/sec: 19910.63 // Query: T124758_1 [L=2948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.73 # Mc/sec: 11553.05 // Query: T124758_2 [L=2947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.64 # Mc/sec: 13173.23 // Query: T124758_3 [L=2947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.80 # Mc/sec: 10538.58 // Query: T103716_1 [L=3380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.76 # Mc/sec: 12723.17 // Query: T103716_2 [L=3380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.5 0.0 0.056 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.059 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.06 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2935 3270 .. 2935 3270 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103716_2 2935 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3020 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103716_2 3021 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3077 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103716_2 3078 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3170 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103716_2 3171 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3263 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103716_2 3264 QLLQNHA 3270 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.056 1 72 [. 3305 3374 .. 3305 3379 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103716_2 3305 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3374 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2959 3082 .. 2925 3089 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103716_2 2959 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3052 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103716_2 3053 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3082 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 3000 3089 .. 2998 3091 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103716_2 3000 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3089 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 2986 3087 .. 2985 3089 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103716_2 2986 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3080 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103716_2 3081 QEIWDYV 3087 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 2988 3082 .. 2984 3089 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103716_2 2988 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3082 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1010 1024 .. 996 1027 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 2993 3045 .. 2986 3051 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103716_2 1010 SKKKKRKKERKKR-----KK 1024 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103716_2 2993 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3045 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3018 3077 .. 2998 3085 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103716_2 3018 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3077 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 909 (0.0557464); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.70u 0.38s 00:00:02.08 Elapsed: 00:00:00.81 # Mc/sec: 11937.78 // Query: T103716_3 [L=3379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.76 # Mc/sec: 12719.40 // Query: T259869_1 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.4 11.3 6.3 1.1 10.0 6.3 1.8 1 Toxin_26 Conotoxin T-superfamily Domain annotation for each model (and alignments): >> Toxin_26 Conotoxin T-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 6.3 6.7e-05 1.1 1 11 [] 330 340 .. 330 340 .. 0.99 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 6.7e-05 Toxin_26 1 FCCPvIRYCCW 11 FCCP CCW T259869_1 330 FCCPAAQLCCW 340 9********** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2370.40 // Query: T259869_2 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2228.15 // Query: T259869_3 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.53 # Mc/sec: 2186.11 // Query: T198202_1 [L=866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 4587.92 // Query: T198202_2 [L=865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 4669.09 // Query: T198202_3 [L=865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 4758.88 // Query: T099706_1 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 8364.03 // Query: T099706_2 [L=1607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 8209.56 // Query: T099706_3 [L=1607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 8513.62 // Query: T138203_1 [L=9682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.41s 00:00:02.52 Elapsed: 00:00:00.75 # Mc/sec: 36931.41 // Query: T138203_2 [L=9682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.38s 00:00:02.42 Elapsed: 00:00:00.70 # Mc/sec: 39569.37 // Query: T138203_3 [L=9681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.49s 00:00:02.80 Elapsed: 00:00:00.79 # Mc/sec: 35057.84 // Query: T338008_1 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-07 31.4 0.0 3e-07 30.6 0.0 1.3 1 RNase_H RNase H 1.5e-06 27.8 0.0 2.7e-06 26.9 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 5.1e-06 26.5 1.2 1.1e-05 25.5 1.2 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.0 5.5e-11 3e-07 34 142 .. 407 518 .. 395 519 .. 0.80 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 5.5e-11 EEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHH....HHTTSSSETTSSBHTTHHHHHHHHHCHC...SSEEEEEE-SCCSS CS RNase_H 34 sapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrw....kknawkttseqkpvknkelaellkelak...kkkvqlkhvkgHaG 126 s +l++ ++++ EL A+ +aLk l ++++ +iy+ SkY++ ++++ + w ++ ++++++ kel+ ++ + + ++++ hv+gH+ T338008_1 407 SGKLPNNWSAQTFELFALSQALKYL-QNQEGTIYSNSKYTFGVAHTFGKIWte*gL---I-NS-KGQDLVHKELITQVLN--Nl*lPEEIATVHVPGHQK 498 556778899**************86.67899***************9999944431...2.33.3336778788888844..334489**********76 PP S.....CHHHHHHHHHHHHHH CS RNase_H 127 d.....pkgNemaDrlAkeaa 142 p gN aD++ k+aa T338008_1 499 SlsfesP-GNYLADQIGKQAA 518 6699977.*********9987 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 0.0 5.1e-10 2.7e-06 129 197 .. 49 116 .. 49 120 .. 0.92 Alignments for each domain: == domain 1 score: 26.9 bits; conditional E-value: 5.1e-10 ESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT-- CS RVT_1 129 kkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglk 197 +++lpqG++ SP lf +++++l+++ k++ ll+Y+DD+l++ ++ +++ +++ ++l++ g+k T338008_1 49 WTVLPQGFTDSPNLFGQILEQVLEKVVI-PKQICLLQYVDDLLVSGEGIKKVTDFSTHILNHLRSKGYK 116 89**********************9985.579*******************999999999999999987 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 1.2 2e-09 1.1e-05 1 38 [. 584 621 .. 584 622 .. 0.99 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 2e-09 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 H+ tH G + + +++ r y +gi++++++V+ sC +C T338008_1 584 HQRTHWGPQAMCDAVLRVYGCIGIYTLAKQVTDSCLVC 621 9**********************************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 15839.96 // Query: T338008_2 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 15047.97 // Query: T338008_3 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-16 59.9 0.0 3.7e-16 59.3 0.0 1.3 1 rve Integrase core domain ------ inclusion threshold ------ 0.017 14.7 0.0 0.034 13.8 0.0 1.4 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.3 0.0 4.5e-20 3.7e-16 3 118 .. 640 751 .. 638 752 .. 0.90 Alignments for each domain: == domain 1 score: 59.3 bits; conditional E-value: 4.5e-20 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 rp + ++vD+t+ + ++ +yllv++d ++++ a + s+ +a +v+++l + + ++ +e sDng+ +t++ ++++ + l+ir+++++p++p T338008_3 640 RPFQSIEVDYTETPPIGHL--KYLLVITDHLTHWVEANPFSNA-TANNVVKALTENIVPRFVL-IENTDSDNGTHFTAHIIKKLSQTLDIRWEYHAPWHP 735 799***********77555..**********************.6666666666666666666.9*********************************** PP rve 103 qdnGkvErfnrtlkde 118 + G+vEr+n+t+k++ T338008_3 736 PSSGRVERMNQTVKNH 751 **************86 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 4.1e-06 0.034 2 35 .. 724 757 .. 723 772 .. 0.85 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 4.1e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellneel 35 +i+++y ap +P g vE++n+t++++l + l T338008_3 724 DIRWEYHAPWHPPSSGRVERMNQTVKNHLTKLFL 757 69*************************9877655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 14801.28 // Query: T139524_1 [L=2983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.59 # Mc/sec: 14464.16 // Query: T139524_2 [L=2982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 14218.33 // Query: T139524_3 [L=2982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.61 # Mc/sec: 13985.24 // Query: T307841_1 [L=2505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-14 51.5 0.0 1.7e-13 50.5 0.0 1.5 1 RVP Retroviral aspartyl protease 2e-13 50.6 0.0 4.2e-13 49.6 0.0 1.5 1 RNase_H RNase H 5.7e-11 42.2 0.2 8.7e-11 41.6 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol ------ inclusion threshold ------ 0.013 15.4 3.0 0.03 14.3 3.0 1.7 1 zf-CCHC Zinc knuckle 0.019 15.5 0.0 0.032 14.8 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.022 15.2 0.0 0.036 14.5 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.04 13.5 0.8 0.095 12.3 0.8 1.6 1 zf-C2H2_10 C2H2 zinc-finger Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 0.0 7.5e-17 1.7e-13 3 97 .. 284 373 .. 282 376 .. 0.92 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 7.5e-17 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklg 97 ++P++++ +ggk i++l+ tGA+++v++ P + k+ + G++g ++++ ++ ++ +++ + ++l +p++p++llGrdlL+kl T307841_1 284 KEPMVRMTVGGKDIKFLVNTGAEHSVVTTPVAPLS----KKAIDIIGATGVLtKQAFCLPRTCSVGGHEVIH--QFLYIPDCPLPLLGRDLLSKLR 373 68*********************************....77777777777776999999*************..*******************997 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.6 0.0 1.8e-16 4.2e-13 35 135 .. 947 1050 .. 923 1051 .. 0.81 Alignments for each domain: == domain 1 score: 49.6 bits; conditional E-value: 1.8e-16 EEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBH.TTHHHHHHHHHCHCSSEEEEEE-SCC....S CS RNase_H 35 apleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpv.knkelaellkelakkkkvqlkhvkgH....a 125 ++l++ +++++aEL+A+++aL+ + ++++vniytDS+Y++ +++ vh++ +++ +s +k++ ++e+ +ll+++ k+++v ++h+kgH + T307841_1 947 KSLPQGTSAQKAELIALTQALElS--EGKTVNIYTDSRYAFLTLQ--VHGALYKEKGLlNSGGKDI*YQQEILQLLEAVWKPRRVAVMHCKGHq*vtT 1040 678899****************55..9**************9555..67775555555255665666559***********************55422 PP SSCHHHHHHH CS RNase_H 126 GdpkgNemaD 135 +++ gN aD T307841_1 1041 SVALGNSGAD 1050 4456777776 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.6 0.2 3.7e-14 8.7e-11 136 209 .. 2368 2454 .. 2368 2472 .. 0.88 Alignments for each domain: == domain 1 score: 41.6 bits; conditional E-value: 3.7e-14 -TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE...... CS RVT_1 136 svlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...s 209 ++lSPllf +m+ l r +r+ ++v+l+++aDD++++ +++++ ++ll+ + e+ k sg+k n +K+ ++l+ + T307841_1 2368 CPLSPLLFITVMEVLARAIRHGK*ikgiqiskEEVKLSLFADDMIVYLENPKDlSKKLLDLINEFSKVSGYKTNVHKSVALLYtnsD 2454 89*******************99***************************999678899999999999***********99875431 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 3.0 1.3e-05 0.03 2 18 .] 229 245 .. 228 245 .. 0.94 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.3e-05 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C +C e+GH++ Cp+ T307841_1 229 QCAYCKETGHWKDKCPQ 245 8***************7 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.0 1.4e-05 0.032 1 77 [. 288 357 .. 288 368 .. 0.72 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.4e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispelaeklglkvrksevtvrvsgaggevkarlvrld.slklggltlknvpalvld 77 v+ t++Gk+++fl+ TGa ++++++ +a + +k+ + ++ga g +++ + l+ + ++gg+++ +++l+++ T307841_1 288 VRMTVGGKDIKFLVNTGAEHSVVTTPVA-----PLSKK--AIDIIGATGVLTKQAFCLPrTCSVGGHEVI-HQFLYIP 357 6789*********************999.....44443..367788888876666666657888888874.4555555 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.0 1.6e-05 0.036 1 29 [. 288 316 .. 288 371 .. 0.65 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.6e-05 EEEEETTEEEEEEEETT-SS-EEEHHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseelae 29 v +t+ gk++kflv TGA+++++++ +a T307841_1 288 VRMTVGGKDIKFLVNTGAEHSVVTTPVAP 316 5789********************99983 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.8 4.1e-05 0.095 5 19 .. 229 243 .. 227 245 .. 0.86 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.1e-05 zf-C2H2_10 5 tCSYChetGHtRAkC 19 +C YC+etGH kC T307841_1 229 QCAYCKETGHWKDKC 243 7*********87777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.60 # Mc/sec: 11943.97 // Query: T307841_2 [L=2505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-11 42.3 0.0 7.7e-11 41.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.8 0.0 4.7e-15 7.7e-11 1 140 [. 495 590 .. 495 593 .. 0.93 Alignments for each domain: == domain 1 score: 41.8 bits; conditional E-value: 4.7e-15 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ +++ p+ + ++ +k +++ lDlk+aF+s++l+ +++kl+af+ +++ T307841_2 495 VPKPGTKDYRPV----QDLRLVNQATVT---------FHPTVPNPYTLLGL------------LPAKDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 569 69*********7....7***********.........*********99555............56899******************************98 PP .......................TEEEEESB--ST-TTHH CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 g+ +++y++++lpqG+++ P T307841_2 570 -------------------GSGVTTHYTWTRLPQGFKNFP 590 ...................7888*************9866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 12572.59 // Query: T307841_3 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-19 70.7 0.0 1.8e-19 69.9 0.0 1.4 1 rve Integrase core domain 1.9e-09 37.2 0.0 3.1e-09 36.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.9 0.0 2.3e-23 1.8e-19 3 109 .. 1180 1282 .. 1178 1282 .. 0.97 Alignments for each domain: == domain 1 score: 69.9 bits; conditional E-value: 2.3e-23 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l r + ++g p+r+ sDng+++++ +++ ++ lgi++++++ + T307841_3 1180 APFEDLQVDFTEMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTRVLLRDLIPRFGL-PLRIGSDNGPAFVADLVQKTAKVLGITWKLHANY 1273 689999********..9999***********************.******************9.********************************** PP rve 101 rpqdnGkvE 109 +p++ GkvE T307841_3 1274 QPWSSGKVE 1282 ********9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.5 0.0 3.9e-13 3.1e-09 115 222 .] 565 667 .. 558 667 .. 0.91 Alignments for each domain: == domain 1 score: 36.5 bits; conditional E-value: 3.9e-13 .........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESS CS RVT_1 115 svrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgksee 214 s+r++g+ s ++ g p Gs +SP++f ++ + l+++ r g++l +Y+D +l+ + + +a+ ++l+++g+k++++K +++ +++ T307841_3 565 SGRIRGQVSPLITLGPGFPRGSRTSPTIFGEALARDLQKFPARDLGCVLFQYIDNLLLGRPMAVGCVKGTDALLQHLEDYGYKVSKKKAQIC-----RQQ 659 556666655666677799************************99************************************************.....9** PP EEETTEEE CS RVT_1 215 vkyLGvtl 222 v+yLG+t+ T307841_3 660 VRYLGFTI 667 ******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 12141.56 // Query: T221988_1 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 9125.06 // Query: T221988_2 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.57 # Mc/sec: 9125.06 // Query: T221988_3 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 9125.06 // Query: T020148_1 [L=1626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8306.62 // Query: T020148_2 [L=1625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.044 13.6 4.4 0.71 9.8 0.1 2.9 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 1.0 0.0034 55 10 21 .. 649 660 .. 647 662 .. 0.92 2 ? 9.8 0.1 4.4e-05 0.71 17 29 .. 1484 1496 .. 1482 1497 .. 0.96 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.0034 Toxin_18 10 CkysdecCSGAc 21 C y + cCS Ac T020148_2 649 CPYTAWCCSWAC 660 99*********9 PP == domain 2 score: 9.8 bits; conditional E-value: 4.4e-05 Toxin_18 17 CSGAcSaaFgyCL 29 CSG Sa F++CL T020148_2 1484 CSGMISAHFNLCL 1496 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 6938.58 // Query: T020148_3 [L=1625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 6456.73 // Query: T090349_1 [L=1097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 4981.48 // Query: T090349_2 [L=1097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 5061.82 // Query: T090349_3 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-47 158.3 26.0 2.2e-38 130.1 13.7 2.4 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.3 4.3 1.6e-15 2.6e-11 12 56 .. 179 223 .. 171 223 .. 0.90 2 ! 130.1 13.7 1.3e-42 2.2e-38 1 89 [] 210 297 .. 210 297 .. 0.98 Alignments for each domain: == domain 1 score: 43.3 bits; conditional E-value: 1.6e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090349_3 179 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 223 566889*************************************97 PP == domain 2 score: 130.1 bits; conditional E-value: 1.3e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090349_3 210 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 297 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 4976.94 // Query: T260575_1 [L=4092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.72 # Mc/sec: 16259.05 // Query: T260575_2 [L=4091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 15815.75 // Query: T260575_3 [L=4091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.78 # Mc/sec: 15004.69 // Query: T229237_1 [L=2253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 9341.23 // Query: T229237_2 [L=2253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.66 # Mc/sec: 9765.83 // Query: T229237_3 [L=2252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.77 # Mc/sec: 8367.00 // Query: T300742_1 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.4 5.6 0.034 14.1 5.6 1.8 1 Mucin-like Mucin-like 5.1 6.1 8.0 7.9 5.4 8.0 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 5.6 4.2e-06 0.034 7 87 .. 344 424 .. 319 428 .. 0.85 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 4.2e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300742_1 344 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 424 445566677889999999999999999999999999999999999999999999999999998888899999999999877 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 8.0 0.00097 7.9 242 305 .. 366 424 .. 336 439 .. 0.62 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.00097 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300742_1 366 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 424 2334444444444444444444444444432.....2466777777777777777777766666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.72 # Mc/sec: 4080.66 // Query: T300742_2 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-09 36.4 0.7 7.3e-09 35.5 0.7 1.4 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.2e-06 27.6 4.4 5e-06 26.4 4.4 1.5 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.7 9e-13 7.3e-09 2 62 .. 521 582 .. 520 585 .. 0.86 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 9e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300742_2 521 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 582 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 4.4 6.1e-10 5e-06 10 82 .. 436 508 .. 423 515 .. 0.54 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 6.1e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300742_2 436 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 508 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5154.51 // Query: T300742_3 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 4380.91 // Query: T279378_1 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 5572.21 // Query: T279378_2 [L=1304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 5567.94 // Query: T279378_3 [L=1304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.53 10.2 5.7 0.57 10.1 0.2 2.7 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.2 3.5e-05 0.57 17 30 .. 858 871 .. 856 872 .. 0.95 2 ? 1.4 1.0 0.018 2.9e+02 17 30 .. 1156 1169 .. 1154 1170 .. 0.94 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.5e-05 Toxin_18 17 CSGAcSaaFgyCLp 30 CSG Sa +++CLp T279378_3 858 CSGVISAHYNLCLP 871 *************9 PP == domain 2 score: 1.4 bits; conditional E-value: 0.018 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA a +CLp T279378_3 1156 CSGAILAHCKLCLP 1169 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 5329.32 // Query: T330238_1 [L=2926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.3 1.9 0.0038 16.9 1.9 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 1.9 2.3e-07 0.0038 6 30 .. 2348 2372 .. 2346 2375 .. 0.93 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 2.3e-07 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkk 30 ++ aqWld++++pk++pkp+ hqk+ T330238_1 2348 RQPAQWLDQEAAPKHFPKPNSHQKR 2372 6899*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:00.80 # Mc/sec: 10463.49 // Query: T330238_2 [L=2925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.75 # Mc/sec: 11157.24 // Query: T330238_3 [L=2925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-18 66.5 0.0 4.1e-18 64.9 0.0 1.9 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.9 0.0 2.5e-22 4.1e-18 12 79 .. 2353 2420 .. 2343 2421 .. 0.85 Alignments for each domain: == domain 1 score: 64.9 bits; conditional E-value: 2.5e-22 Transposase_1 12 ldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr.qklqekrpalvn 79 + + k +pk++l kkvm+tV+Wsa+gli+y+fl+pget t e+Y qq+d+++ + lq+++pal+n T330238_3 2353 VRPRSRSKALPKAKLAPKKVMVTVCWSAAGLIHYSFLNPGETSTLEKYVQQIDEMH*K-LQCLQPALIN 2420 566778999**********************************************743.4555566655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 11462.91 // Query: T198922_1 [L=1035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 4934.93 // Query: T198922_2 [L=1034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 4771.13 // Query: T198922_3 [L=1034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 4771.13 // Query: T361828_1 [L=4008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:00.84 # Mc/sec: 13650.25 // Query: T361828_2 [L=4007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.82 # Mc/sec: 13979.69 // Query: T361828_3 [L=4007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.68 # Mc/sec: 16857.86 // Query: T259116_1 [L=6439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.23u 0.43s 00:00:02.66 Elapsed: 00:00:00.92 # Mc/sec: 20022.70 // Query: T259116_2 [L=6439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.18u 0.45s 00:00:02.63 Elapsed: 00:00:00.79 # Mc/sec: 23317.58 // Query: T259116_3 [L=6438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.40s 00:00:02.52 Elapsed: 00:00:00.81 # Mc/sec: 22738.30 // Query: T077412_1 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.71 # Mc/sec: 5725.69 // Query: T077412_2 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 6452.76 // Query: T077412_3 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 6664.33 // Query: T221998_1 [L=3214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.71 # Mc/sec: 12950.29 // Query: T221998_2 [L=3213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.35s 00:00:01.59 Elapsed: 00:00:00.66 # Mc/sec: 13927.04 // Query: T221998_3 [L=3213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.71 # Mc/sec: 12946.26 // Query: T035082_1 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.075 13.6 4.3 0.17 12.4 4.3 1.6 1 PLA2_inh Phospholipase A2 inhibitor 0.25 11.9 6.2 0.33 11.5 5.3 1.7 2 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> PLA2_inh Phospholipase A2 inhibitor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 4.3 2.1e-05 0.17 2 55 .. 58 112 .. 57 116 .. 0.89 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.1e-05 PLA2_inh 2 sCeiCvnl.GkdCegykeeCdsneDaCvtvllevssaplslrlihknCfssdlCk 55 +C C ++ G++C+++ + C++++ +C ++ + + + k C +dlCk T035082_1 58 KCPTCFAVqGRKCDTELKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLCK 112 699998655*********************98777777789999**********8 PP >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 0.0 2 1.6e+04 17 30 .. 28 41 .. 27 52 .. 0.66 2 ? 11.5 5.3 4.1e-05 0.33 1 52 [. 59 111 .. 59 132 .. 0.93 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 2 EEETTB-EEEEEEE CS UPAR_LY6 17 eCpeadsvCvsatl 30 +Cp +++v ++ ++ T035082_1 28 SCPSSQTVSWEIKM 41 57777776555554 PP == domain 2 score: 11.5 bits; conditional E-value: 4.1e-05 EEEEEEBTTTBCCCC.EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGG CS UPAR_LY6 1 CysClgessesClpe.veCpeadsvCvsatlklqagnlettlvvkgCaressc 52 C++C ++ +C +e + C+ ++ C++ + + g ++ + +k C+++ c T035082_1 59 CPTCFAVQGRKCDTElKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLC 111 ***************99********************************9999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.62 # Mc/sec: 1845.70 // Query: T035082_2 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 1841.08 // Query: T035082_3 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.62 # Mc/sec: 1841.08 // Query: T051580_1 [L=4171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.39s 00:00:01.91 Elapsed: 00:00:00.75 # Mc/sec: 15910.03 // Query: T051580_2 [L=4171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.41s 00:00:02.01 Elapsed: 00:00:00.81 # Mc/sec: 14731.51 // Query: T051580_3 [L=4171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.89 # Mc/sec: 13407.33 // Query: T280053_1 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 3273.13 // Query: T280053_2 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 3372.31 // Query: T280053_3 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 3091.29 // Query: T343408_1 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 595 (0.0364896); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 7678.10 // Query: T343408_2 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 577 (0.0353857); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 6700.79 // Query: T343408_3 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 589 (0.0361217); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:00.73 # Mc/sec: 6517.21 // Query: T000055_1 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 4943.14 // Query: T000055_2 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 853 (0.052312); expected 326.1 (0.02) Passed bias filter: 428 (0.026248); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 5193.89 // Query: T000055_3 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 4706.96 // Query: T294006_1 [L=3392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.68 # Mc/sec: 14270.49 // Query: T294006_2 [L=3392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.69 # Mc/sec: 14063.67 // Query: T294006_3 [L=3392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.69 # Mc/sec: 14063.67 // Query: T183000_1 [L=10346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 655 (0.0401693); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.55u 0.57s 00:00:04.12 Elapsed: 00:00:01.27 # Mc/sec: 23305.63 // Query: T183000_2 [L=10346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.90u 0.45s 00:00:03.35 Elapsed: 00:00:01.14 # Mc/sec: 25737.52 // Query: T183000_3 [L=10346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.80u 0.49s 00:00:03.29 Elapsed: 00:00:00.93 # Mc/sec: 31825.96 // Query: T381552_1 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 7208.42 // Query: T381552_2 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.64 # Mc/sec: 7433.69 // Query: T381552_3 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.66 # Mc/sec: 7208.42 // Query: T183024_1 [L=6752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.36s 00:00:02.48 Elapsed: 00:00:00.79 # Mc/sec: 24451.04 // Query: T183024_2 [L=6752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 769 (0.0471606); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.50s 00:00:02.98 Elapsed: 00:00:00.95 # Mc/sec: 20332.97 // Query: T183024_3 [L=6752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.44s 00:00:02.46 Elapsed: 00:00:00.88 # Mc/sec: 21950.37 // Query: T090227_1 [L=3110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 721 (0.0442169); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.42s 00:00:02.04 Elapsed: 00:00:01.01 # Mc/sec: 8809.09 // Query: T090227_2 [L=3110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.64 # Mc/sec: 13901.85 // Query: T090227_3 [L=3110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 940 (0.0576475); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.40s 00:00:02.15 Elapsed: 00:00:00.72 # Mc/sec: 12357.20 // Query: T124755_1 [L=3462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.61 # Mc/sec: 16236.38 // Query: T124755_2 [L=3462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.60 # Mc/sec: 16506.99 // Query: T124755_3 [L=3461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.61 # Mc/sec: 16231.69 // Query: T201386_1 [L=4428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.62 # Mc/sec: 20431.86 // Query: T201386_2 [L=4428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 20431.86 // Query: T201386_3 [L=4428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.63 # Mc/sec: 20107.55 // Query: T111689_1 [L=5517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.63 # Mc/sec: 25052.70 // Query: T111689_2 [L=5517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.62 # Mc/sec: 25456.77 // Query: T111689_3 [L=5517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.65 # Mc/sec: 24281.84 // Query: T261686_1 [L=1396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 6885.72 // Query: T261686_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-37 129.0 3.2 2.2e-37 128.6 3.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.6 3.2 1.4e-41 2.2e-37 1 222 [] 942 1194 .. 942 1194 .. 0.95 Alignments for each domain: == domain 1 score: 128.6 bits; conditional E-value: 1.4e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++s+Rpisl+++d+k+lnk++a+ ++++++kl++++q f pg + + ++ ++++++++ + k+++++++D +kaFd++++++ l T261686_2 942 IPKPGrdttiTKSFRPISLMNIDVKILNKILANLIQQHIKKLIHHDQISFIPGMQGWFNIcksiNVIHHINRTNDKNHMIISIDAEKAFDKIQHPFML 1039 89*************************************************************9999***999************************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.............TEEECTTEEEEEESS.HHH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.......kgvtllrYaDDililsks.kee 179 ++l++ +++ + +++i++++ ++++++ +ng++ e + k+++p s + P+ ++ + ++ +r ++v+l+++aDD++++ ++ + T261686_2 1040 KTLNKRGIDGTYLKIIRAIYDKPTANIILNGQKLEAFQHKTRMP--SLTTPIQHSIGSSGQGNQATERNkgiqigrEEVKLSLFADDMIVYLQNpIVS 1135 ********************************989999999999..8*******************999*************************6677 PP HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 180 lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +q+ll+ + ++ k sg+kin +K +++l+ s+ +++ kyLG++l T261686_2 1136 AQNLLKLINNFSKVSGCKINVQKLHAFLYtnnrqterkimSEllftiATKRRKYLGIQL 1194 ***************************999998888776611556789********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7256.11 // Query: T261686_3 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 7001.51 // Query: T221805_1 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.54 # Mc/sec: 2935.00 // Query: T221805_2 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3047.88 // Query: T221805_3 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3042.38 // Query: T097872_1 [L=3489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-13 48.4 0.1 1.3e-12 47.6 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 0.00014 21.6 0.7 0.00026 20.7 0.7 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.6 0.1 1.6e-16 1.3e-12 109 218 .. 1301 1436 .. 1299 1440 .. 0.82 Alignments for each domain: == domain 1 score: 47.6 bits; conditional E-value: 1.6e-16 ...............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT- CS RVT_1 109 lstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesgl 196 + ++++++ +ng++ e ++ k+ ++qG++lS llfn++++ l r ++++ ++vtl++++DD++++ ++ ++q+ll+ ++++ k + T097872_1 1301 YDKPTANIILNGQKLESFPLKTSTRQGCPLSSLLFNIVLEALARAVSQEKeikririrrEKVTLSLFVDDMIVYLENpIVSAQNLLKLISNFSK-VSG 1397 6788999999***99*********************************99***************************55558888877777755.555 PP .-BEGGG-EEE.....................ESSEEET CS RVT_1 197 .kinpeKtklvlf...........sg.....kseevkyL 218 kin +K++++l+ s+ ++++kyL T097872_1 1398 *KINVQKSQAFLYtnnrqtesqimSElpftiATKKIKYL 1436 668889999998877666665555113445677777776 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.7 3.1e-08 0.00026 2 118 .. 783 906 .. 782 907 .. 0.79 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 3.1e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i ++Y p++ + + +++ + +l ++l+ ++ii+GDfN + + +++++ ++++++L + l++ +l + ++k+ tf s + T097872_1 783 TILNIYAPNTG-APRFTKQVFGDLQRDLD-FHTIIVGDFNTPLSILDRSTRQKiNKNNQDLNSALDQMDLIDIyrtLHPKSAeYTFFSAPHqtY 874 78999999998.55556666666666665.69**************99888889***************9966666444444477765544458 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s D ++ ++l+ + + + +++SDH++i T097872_1 875 SKTDHIIGCKTLLSKckRMKITINSLSDHSAI 906 999*****9999999996666789*****998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.55 # Mc/sec: 18148.07 // Query: T097872_2 [L=3488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-57 192.3 27.9 1.2e-51 175.6 22.9 2.9 2 Transposase_22 L1 transposable element 2.6e-06 26.8 1.1 6e-06 25.6 1.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.038 14.1 0.0 0.076 13.1 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.17 11.7 4.5 4.9 7.0 0.5 2.4 2 HSBP1 Heat shock factor binding protein 1 0.27 11.7 5.0 0.79 10.2 5.0 1.8 1 Syntaxin-6_N Syntaxin 6, N-terminal 5.6 6.6 12.0 1.7 8.3 5.4 2.4 2 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.6 22.9 4.3e-55 1.2e-51 9 263 .. 313 539 .. 309 540 .. 0.91 2 ! 17.3 0.2 5.5e-07 0.0015 329 359 .. 603 635 .. 601 635 .. 0.94 Alignments for each domain: == domain 1 score: 175.6 bits; conditional E-value: 4.3e-55 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............. CS Transposase_22 9 nrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiikekqentskqv 99 +k +nsk ++ s+P+k+++ssPa e+++ +++f+el + ++++ + ++lke + ++ke + k ++e + en T097872_2 313 TKKAENSKNQNSSSPPKDHNSSPAR--EQNWTENEFDELTEVGFRRwviTNSSKLKEHVLVQCKEAKnLDKGLQELLTRITS-----LENN---- 396 6899********************9..******************966568899**********998777888886555544.....2222.... PP .....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE CS Transposase_22 100 memnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrl 194 ++l++lk ++el + s++srid++eer+s +ed ++ei++e k rekr+++++qslq+iqd+vkrPnl l T097872_2 397 ---INDLMDLKNTARELCEAYT------------------SINSRIDQVEERISEIEDGLNEIKHEDKIREKRMRRNKQSLQKIQDYVKRPNLHL 470 ...2589*******99988887..................******************************************************* PP ES----TT--.HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 195 iGvdesedeq.lkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 iG+ es+ e+ + len+l++ii+ nfPnl+++an++iqei+rtP+r++ +ra++rh+ + + kv++k+k T097872_2 471 IGLLESDREN*TT-LENTLQDIIQVNFPNLARHANIQIQEIQRTPQRYSMRRATPRHLNIIFVKVEMKEK 539 ******9987765.9******************************************************8 PP == domain 2 score: 17.3 bits; conditional E-value: 5.5e-07 EEESSHHHHHHHHTT-HHHHHHHTT..T-SSXS CS Transposase_22 329 kvfidktklrdylstrPalkrllke..knerkd 359 k+f dk++lrd+++tr al +llke ++erk+ T097872_2 603 KIFSDKQMLRDFITTRLALLQLLKEasNMERKN 635 99***********************99999987 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.6 1.1 2.2e-09 6e-06 2 19 .] 1907 1924 .. 1907 1924 .. 0.96 Alignments for each domain: == domain 1 score: 25.6 bits; conditional E-value: 2.2e-09 DUF1725 2 FagKWMELEnIILSEisQ 19 F g+WM+LE+IILS+ +Q T097872_2 1907 FSGTWMKLETIILSKLTQ 1924 77***************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 2.8e-05 0.076 1 72 [. 684 753 .. 684 770 .. 0.81 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH......EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla......dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ s ++ +la+++k++d+ v + qE++ ++ +l+ + + + ++++ gva+l++ T097872_2 684 LTLNVNG----LNASIKRHRLANWIKSQDPSVYCTQETHLTCKDTYRLKIkgwr*iY----QASGKQEKAGVAILVSD 753 699****....77788999******************99998877777668888862....34556677788887765 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.5 0.0018 4.9 30 48 .. 384 402 .. 378 405 .. 0.88 2 ? 5.8 0.3 0.0045 12 24 46 .. 416 438 .. 413 442 .. 0.87 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0018 HSBP1 30 DdMssriDdLEksiadlmt 48 ++ +ri +LE++i+dlm+ T097872_2 384 QELLTRITSLENNINDLMD 402 67889*************7 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0045 HSBP1 24 qilsriDdMssriDdLEksiadl 46 +i sriD+ ++ri ++E ++++ T097872_2 416 SINSRIDQVEERISEIEDGLNEI 438 799**************988876 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 5.0 0.00029 0.79 16 96 .. 378 464 .. 360 465 .. 0.75 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00029 Syntaxin-6_N 16 kleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreevk 96 +l + ++++ +++ +++++ + +l++t +eL +a+ si+ ++++ee ++ +e +++ ki+ek ++r ++ ++++++ vk T097872_2 378 NLDKGLQELlTRITSLENNiNDLMDLKNTARELCEAYTSINSRIDQVEERISEIEDglneIKHEDKIREKRMRRNKQSLQKIQDYVK 464 444444444346666666666789999999999999999999999999999888765532446699999999999999999999887 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 5.4 0.00061 1.7 78 178 .. 364 458 .. 321 466 .. 0.58 2 ? 1.5 0.5 0.075 2e+02 68 143 .. 1053 1128 .. 1044 1132 .. 0.86 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00061 IncA 78 rlqeelselesrlaeleeeleqleerlaelea...elkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlq 174 +l+e++ + ++ + l++ l++l +r+ +le +l dl++ +l+e+ +s +sr++ +ee+i+e++ + e+ ++++++e+r +++++q T097872_2 364 KLKEHVLVQCKEAKNLDKGLQELLTRITSLENninDLMDLKNTARELCEAYTSINSRIDQVEERISEIEDGLNEIK----HEDKIREKR-----MRRNKQ 454 4444444444444555555555555544444311134455555556668888888888888888888888888888....444444333.....344444 PP IncA 175 rlqq 178 lq+ T097872_2 455 SLQK 458 4444 PP == domain 2 score: 1.5 bits; conditional E-value: 0.075 IncA 68 qsedekieesrlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikela 143 +++ek + +++ ++ e+ + +e+++ +++ ++l++++ e+++ + + ++ + +++++sl+++i +++ T097872_2 1053 KKKREKNQIDTIKNDKGEIITDPTEIQTTIREYYKHLYANKMENLEEMDKFLVTYTLPRLNQEEVKSLNRPITSYE 1128 44555555577999999999*************************9999999999***************998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.60 # Mc/sec: 16630.96 // Query: T097872_3 [L=3488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-25 87.4 0.0 1.2e-24 86.8 0.0 1.2 1 Transposase_22 L1 transposable element 2e-15 56.8 0.5 3.1e-15 56.2 0.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.8 0.0 1.4e-28 1.2e-24 274 332 .. 548 606 .. 541 610 .. 0.97 Alignments for each domain: == domain 1 score: 86.8 bits; conditional E-value: 1.4e-28 EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEES CS Transposase_22 274 vtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfi 332 vt k kP rlt d+saetl++rrew++ ++ilke++fqPr++yPakls+i++Geik f+ T097872_3 548 VTHKKKPFRLTVDFSAETLQTRREWGPTFDILKENNFQPRISYPAKLSLISEGEIKSFQ 606 89*******************************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 0.5 3.8e-19 3.1e-15 1 100 [. 1184 1292 .. 1184 1300 .. 0.91 Alignments for each domain: == domain 1 score: 56.2 bits; conditional E-value: 3.8e-19 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++R+ l++++ k+ln+++a+++++++++l++++q+gf +g + + ++ + ++++++ + k ++++++D +kaF+++++++ l T097872_3 1184 IPKPGrdtteKENFRTTFLMHINAKILNRILANQIQQHIKNLIHHDQVGFITGMQGWLSIhksiNIIHHINRTNDKTHIIVSIDAEKAFNKIQHPFML 1281 89999999999*****99***********************************999888899988888888888899********************* PP GGGG-EEET.. CS RVT_1 90 rkltafkvptk 100 +l++ +++ + T097872_3 1282 ITLNKPGIDGT 1292 99999888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 16094.48 // Query: T079597_1 [L=2438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 9687.09 // Query: T079597_2 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.68 # Mc/sec: 10252.71 // Query: T079597_3 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.5 7.0 6.0 12 5.9 6.0 1.4 1 DUF982 Protein of unknown function (DUF982) Domain annotation for each model (and alignments): >> DUF982 Protein of unknown function (DUF982) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 6.0 0.00072 12 34 69 .. 1514 1549 .. 1510 1551 .. 0.92 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00072 -SHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHH CS DUF982 34 rgeayeaAlkaCrdAldgdvpveeAReaFiaAaeea 69 +g+a +A++aC ++++++++ +A+ ++ aAa +a T079597_3 1514 HGPAAAEACRACSLSHADRRAPRAACSTLWAAAPRA 1549 79******************************9776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 10252.71 // Query: T248996_1 [L=3140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 13407.47 // Query: T248996_2 [L=3140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.76 # Mc/sec: 11819.75 // Query: T248996_3 [L=3139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-07 30.8 0.7 1.3e-06 28.4 0.1 2.4 2 V-set Immunoglobulin V-set domain 0.005 16.7 0.1 0.1 12.5 0.0 2.9 2 I-set Immunoglobulin I-set domain ------ inclusion threshold ------ 0.016 15.3 0.9 0.17 12.0 0.1 2.6 2 ig Immunoglobulin domain Domain annotation for each model (and alignments): >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.1 1.6 8.6e+03 15 33 .. 1146 1161 .. 1141 1164 .. 0.80 2 ! 28.4 0.1 2.4e-10 1.3e-06 5 108 .. 1391 1520 .. 1387 1521 .. 0.83 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 1.6 EEEEEESSSSCCTCSEEEE CS V-set 15 tLsCtlssseseeslsiyW 33 +LsC++++s +++s++ T248996_3 1146 KLSCKYNTS---AFYSMSL 1161 89*****99...8888765 PP == domain 2 score: 28.4 bits; conditional E-value: 2.4e-10 EEEEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS.......CEEEEEEEETT...................TEEEEESTTTEEEEE.ETTTTEEEE CS V-set 5 svtvaeGesvtLsCtlssseseeslsiyWyrqppgk.......epeelilyysn...................sskegkkkgrfslrg.dpsrsdfsL 75 ++++ + ++vtLsC++s + +e+l+++W r++ ++ ++ +l++ y + +++++ +gr+s+ + +s++++sL T248996_3 1391 ELRAHPFTDVTLSCHFSFVKGTENLEFSWEREDIKQayevednKEYYLLFKYLDffevfsklvyqfhnnteqlEDQNSLYEGRVSVDQaEISEGTLSL 1488 5666777899****999447889999999999988788888886667777777688888888888888***988888888****************** PP EESSESGGG-EEEEEEEESSSEEEEEEEEEEEE CS V-set 76 tiqnlqlsDsGtYfCavvssgegvfgsgtrLtV 108 ++n+ D+++Y C+ ++ g+ +s+++L V T248996_3 1489 LLRNVDFMDEAIYKCS-AITPDGRGESTIKLIV 1520 ****************.6777777777777776 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 0.0 1.9e-05 0.1 24 90 .] 1409 1520 .. 1384 1520 .. 0.71 2 ? -0.7 0.0 0.26 1.4e+03 29 76 .. 1549 1600 .. 1548 1607 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.9e-05 EECSSS-EEEEEETTCB-ST..........................................SSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 24 veGepepsvsWakdgselks..........................................sqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 v+G++++++sW +++ + + + rv+v++ e ++ +L ++nv+ De +Y+c a T248996_3 1409 VKGTENLEFSWEREDIKQAYevednkeyyllfkyldffevfsklvyqfhnnteqledqnslyEGRVSVDQAEiseGTLSLLLRNVDFMDEAIYKCSAI 1506 556666666666653333333455666666666666666666666666666666666777777888888888888999******************** PP ETSEEEEEEEEEEE CS I-set 77 nsagkaeakaeLkV 90 g+ e++++L V T248996_3 1507 TPDGRGESTIKLIV 1520 *****999999987 PP == domain 2 score: -0.7 bits; conditional E-value: 0.26 S-EEEEEET.TCB-STSSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 29 epsvsWakd.gselkssqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 +p v+W+ + +++l++ + v++ +e+ + I + v+ + kY c +t T248996_3 1549 TPIVTWLDRtERDLSNHSIVEILEEQmngFYRVFSILKYPVKLNEKYLCHIT 1600 589******9******999999999876556678888888888888888776 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 3.1e-05 0.17 8 84 .. 1394 1515 .. 1387 1518 .. 0.78 2 ? -3.5 0.1 2 1.1e+04 67 75 .. 2017 2025 .. 2015 2025 .. 0.75 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.1e-05 EETTS-EEEEEEEE..SSCCTSEEEEEESSCSSSEEEE...........................................EEEEETTCEEEEEEEES CS ig 8 vleGesatLtCsvs..tqtkptdvtWkkegqtkiesqk...........................................vvkegnrrkgsssllis 60 +++ + +tL+C+ s +t++++++W++e+ + + +v + + +g+ sll++ T248996_3 1394 AHPFTDVTLSCHFSfvKGTENLEFSWEREDIKQAYEVEdnkeyyllfkyldffevfsklvyqfhnnteqledqnslyegrvSVDQAEISEGTLSLLLR 1491 5556789*********************98544444444569999999999999999998888777777777777777766666666666777***** PP SSTGGG-EEEEEEEEETTEEEEEE CS ig 61 kvteedaGtYtCevnnsgssvtls 84 +v d+ Y C + ++++ +++ T248996_3 1492 NVDFMDEAIYKCSAITPDGRGEST 1515 ************999999877765 PP == domain 2 score: -3.5 bits; conditional E-value: 2 -EEEEEEEE CS ig 67 aGtYtCevn 75 + +YtC+v+ T248996_3 2017 GDEYTCTVS 2025 449***996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.75 # Mc/sec: 11973.53 // Query: T001576_1 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 6096.85 // Query: T001576_2 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 6524.70 // Query: T001576_3 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 6412.21 // Query: T196597_1 [L=277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.70 # Mc/sec: 1132.07 // Query: T196597_2 [L=277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 1148.48 // Query: T196597_3 [L=276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 1338.29 // Query: T025734_1 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 8173.10 // Query: T025734_2 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 6489.77 // Query: T025734_3 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 6865.99 // Query: T274370_1 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00092 17.9 5.3 0.0092 14.6 1.9 2.3 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.1 0.1 0.00084 14 329 370 .. 276 313 .. 200 327 .. 0.73 2 ! 14.6 1.9 5.7e-07 0.0092 428 547 .. 1045 1168 .. 1039 1181 .. 0.79 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.00084 XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX CS TLV_coat 329 kgseylvapngtvfacntgltpclstallnlttdlCvlaell 370 ++s + + ++ c+ l +lln++++ C l++l T274370_1 276 SQSALVHPRVDVWWYCGGPLL----DTLLNNWSGTCALVQLA 313 334344445567889999988....899***********995 PP == domain 2 score: 14.6 bits; conditional E-value: 5.7e-07 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HHHHHHHHH....HHHHHHHHHHHHHH-XXXX.XX CS TLV_coat 428 kLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksgivrdsia....kLqerleqrqrllednqlwfeg 520 +Lqa le +++ ++++ ++ t++ + + QNR LD L + eGG+C + +CC +d g v +sia kL + + ++ l f T274370_1 1045 QLQAVLEIISNEIGKALTVSAQQETQMRNAIYQNRLALDYLLAAEGGVCGKFNlINCCLQIDDQGQVVESIAsem*KLAHVPVKVWHGFDAGSL-FGK 1141 666666666677888888888889999999*******************9999459***************96666688888888888887777.688 PP XXXXXXXXXXXX....XXXXXXXXXXX CS TLV_coat 521 llglspwlttllstilgpLlllLLiLl 547 ++ + + tl+ i+ +L + LL+L+ T274370_1 1142 WFPALGGFKTLIIGIVIVLGTCLLLLC 1168 888888888888666655555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.74 # Mc/sec: 5551.56 // Query: T274370_2 [L=1435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 7464.17 // Query: T274370_3 [L=1435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 7330.88 // Query: T370872_1 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 13.2 0.0 0.063 12.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 3.8e-06 0.063 185 222 .] 14 46 .. 4 46 .. 0.93 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.8e-06 HHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 185 eaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +a+ ++lk++g+k++++K +++ +++v yLG+t+ T370872_1 14 DALLQHLKDCGYKVSKKKAQIC-----RQQVSYLGFTI 46 68999*****************.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 7395.05 // Query: T370872_2 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.67 # Mc/sec: 8057.29 // Query: T370872_3 [L=1887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-22 78.2 0.0 1.1e-21 77.4 0.0 1.3 1 RNase_H RNase H 1.4e-10 41.3 0.0 2.3e-10 40.6 0.0 1.3 1 rve Integrase core domain 1.3e-06 28.4 0.1 3.4e-06 27.1 0.1 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.4 0.0 2e-25 1.1e-21 5 142 .. 298 439 .. 295 440 .. 0.85 Alignments for each domain: == domain 1 score: 77.4 bits; conditional E-value: 2e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHT..TSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkkn..awkttseqkpvk 99 +Y+DGs++ n +ge++ag+ v+ + a ++pl++ +++++aEL+A++ aL+ + ++++vniytDS+Y++ +++ vh++ ++ + +s +k++k T370872_3 298 ELYVDGSSFINpQGERCAGYaVVTLD-AVIEAKPLPQGTSAQKAELIALTRALElS--EGKTVNIYTDSHYAFLTLQ--VHGALYK*kGL-LNSGGKDIK 391 68*********99999****766766.5677899********************55..9**************9444..79985544134.566666788 PP T.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv + h++gH+ + gN +aD+ A++aa T370872_3 392 YqQEILQLLEAVWKPQKVAVLHCRGHQRAsisvALGNSRADSEAQKAA 439 7689**********************665568878**********998 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.6 0.0 4.2e-14 2.3e-10 3 103 .. 563 659 .. 561 663 .. 0.95 Alignments for each domain: == domain 1 score: 40.6 bits; conditional E-value: 4.2e-14 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialle.ravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l + rf p+r+ sDng ++++ +++ ++ lgi+++++++++ T370872_3 563 APFEDLQVDFTEMP--KCGGNKYLLVRVCTYSGWVEAYPTPTE-KAYEVTRVLL*DLIPRFVL--PLRIDSDNGLAFVADLVQKTAKALGITWKLHAAYQ 657 688999********..9999***********************.*********999******9..********************************998 PP rve 102 pq 103 q T370872_3 658 LQ 659 76 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 0.1 6.2e-10 3.4e-06 1 39 [] 505 543 .. 505 543 .. 0.99 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 6.2e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++t lG++ l++ll +++++ ++ ++++ V+++C++Cq T370872_3 505 HETTYLGQESLEKLLGQYFYISHLPALAKAVAQQCVTCQ 543 999***********************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 7823.75 // Query: T370223_1 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.63 # Mc/sec: 8278.24 // Query: T370223_2 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.096 12.6 0.2 24 4.9 0.0 3.4 3 CHB_HEX_C_1 Chitobiase/beta-hexosaminidase C-terminal domain Domain annotation for each model (and alignments): >> CHB_HEX_C_1 Chitobiase/beta-hexosaminidase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.0045 73 22 33 .. 1053 1064 .. 1039 1074 .. 0.86 2 ? 4.9 0.0 0.0015 24 19 34 .. 1246 1261 .. 1231 1274 .. 0.82 3 ? -3.2 0.1 0.51 8.3e+03 20 39 .. 1318 1338 .. 1309 1347 .. 0.72 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.0045 CHB_HEX_C_1 22 tIyYTtDGsePt 33 t YT+DG +P T370223_2 1053 TTVYTLDGGTPR 1064 789*******96 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0015 CHB_HEX_C_1 19 edatIyYTtDGsePtl 34 e t YT+DG +P l T370223_2 1246 ESSTTVYTLDGGTPRL 1261 456999********76 PP == domain 3 score: -3.2 bits; conditional E-value: 0.51 CHB_HEX_C_1 20 datIyYTtDGsePtlss.skY 39 t YT G +P + s+Y T370223_2 1318 SSTTVYTPGGRTPRILHnSVY 1338 447778888888877333666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 8019.13 // Query: T370223_3 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 7140.32 // Query: T324544_1 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-36 123.1 406.5 8.5e-16 57.8 9.2 34.8 29 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.1 1.9 8.5e-05 1.4 9 45 .. 1 36 [. 1 38 [. 0.88 2 ? 1.8 0.9 0.016 2.6e+02 19 39 .. 31 51 .. 29 51 .. 0.92 3 ! 6.2 4.7 0.00068 11 19 49 .. 62 94 .. 58 94 .. 0.87 4 ? -5.3 6.3 1 1.6e+04 7 46 .. 99 145 .. 97 145 .. 0.51 5 ? 2.0 0.7 0.014 2.3e+02 38 49 .. 155 166 .. 148 166 .. 0.82 6 ! 12.7 15.1 6.4e-06 0.1 1 40 [. 172 243 .. 172 246 .. 0.94 7 ! 6.6 2.6 0.00052 8.4 30 49 .. 264 283 .. 259 284 .. 0.80 8 ! 4.4 7.5 0.0025 41 13 48 .. 290 344 .. 284 345 .. 0.65 9 ! 2.9 1.0 0.0073 1.2e+02 7 27 .. 346 366 .. 345 370 .. 0.85 10 ? 0.8 0.1 0.033 5.4e+02 1 13 [. 361 373 .. 361 381 .. 0.84 11 ! 11.1 2.4 1.9e-05 0.31 3 29 .. 384 410 .. 382 413 .. 0.91 12 ! 4.6 15.6 0.0021 35 1 50 [] 414 485 .. 414 485 .. 0.84 13 ! 9.8 5.6 5e-05 0.82 7 43 .. 485 520 .. 483 525 .. 0.92 14 ! 21.0 15.6 1.6e-08 0.00026 2 49 .. 533 579 .. 532 579 .. 0.94 15 ? -1.4 0.0 0.16 2.7e+03 7 15 .. 580 587 .. 580 592 .. 0.81 16 ! 15.6 1.1 7.5e-07 0.012 1 15 [. 595 608 .. 595 615 .. 0.82 17 ! 21.3 12.6 1.3e-08 0.00022 1 34 [. 616 661 .. 616 665 .. 0.97 18 ! 23.8 28.0 2.1e-09 3.4e-05 1 50 [] 670 753 .. 670 753 .. 0.95 19 ! 9.1 7.6 8.3e-05 1.3 29 50 .] 753 774 .. 751 774 .. 0.96 20 ! 21.7 2.9 9.6e-09 0.00016 17 50 .] 774 807 .. 774 807 .. 0.96 21 ! 57.8 9.2 5.2e-20 8.5e-16 1 50 [] 812 859 .. 812 859 .. 0.99 22 ? -2.1 6.4 0.26 4.2e+03 5 27 .. 860 894 .. 860 903 .. 0.80 23 ? 0.3 0.2 0.048 7.9e+02 2 14 .. 890 904 .. 889 934 .. 0.64 24 ! 2.9 21.3 0.007 1.1e+02 8 42 .. 996 1062 .. 968 1081 .. 0.73 25 ! 8.5 12.6 0.00013 2.1 14 49 .. 1121 1168 .. 1102 1168 .. 0.83 26 ? 0.2 13.4 0.048 7.9e+02 9 39 .. 1171 1211 .. 1170 1222 .. 0.63 27 ? -2.4 14.0 0.32 5.2e+03 7 46 .. 1222 1274 .. 1220 1276 .. 0.84 28 ? -4.8 15.2 1 1.6e+04 4 49 .. 1243 1311 .. 1242 1312 .. 0.75 29 ! 7.3 2.4 0.0003 4.9 3 28 .. 1319 1343 .. 1318 1347 .. 0.88 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 8.5e-05 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 ++ q + +l+ +l ps++L +As G+ p L++ T324544_1 1 WHPQ-AKLLPFGSLYGPSSCLAMASLGQAHAPRRLFQ 36 6778.999********************998888776 PP == domain 2 score: 1.8 bits; conditional E-value: 0.016 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T324544_1 31 PRRLFQAQLLPFAACPGPECP 51 788999**************8 PP == domain 3 score: 6.2 bits; conditional E-value: 0.00068 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T324544_1 62 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 94 78999***************65557999*9997 PP == domain 4 score: -5.3 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqas...glsrpsa.qLpvAsaGpkl...ppagLsrP 46 ++ +L+ p sl+ + +l p a +Lp++ +pk p +gL rP T324544_1 99 FQAHLRPPSSLSNQtipSLRPPKAkFLPASRHPPKTehlPHGGLPRP 145 66677755555544111344444423455555555566677777777 PP == domain 5 score: 2.0 bits; conditional E-value: 0.014 DUF4705 38 lppagLsrPssC 49 lp gL+rP+sC T324544_1 155 LPHNGLFRPKSC 166 588899999999 PP == domain 6 score: 12.7 bits; conditional E-value: 6.4e-06 DUF4705 1 PgpAPasrrpLqa...............................paslqasglsrpsaqLpvAsaGpkl.pp 40 Pg A as++ Lqa + l+ +l rps++L +As Gp + ++ T324544_1 172 PGTALASWQALQAqilqklaspnsapascrltqaqtlttq*tlqAHHLPEHSLLRPSSCLLAASTGPAPaSQ 243 8999***************************************************************98555 PP == domain 7 score: 6.6 bits; conditional E-value: 0.00052 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp+++srPss+ T324544_1 264 LTHTPVPKLPPVSRSRPSSS 283 5556779***********97 PP == domain 8 score: 4.4 bits; conditional E-value: 0.0025 DUF4705 13 a.....................paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 a ++ q++ sr s+ ++s+ p+l p+gLsrPss T324544_1 290 AkivlkspsaglapaskccvgqANASQHT--SRLSVSFCASSPSPELTPVGLSRPSS 344 55555555555555555555445555555..455666669***************98 PP == domain 9 score: 2.9 bits; conditional E-value: 0.0073 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T324544_1 346 SQWPLQAKTVLKSASPGPTPS 366 79****988899999988876 PP == domain 10 score: 0.8 bits; conditional E-value: 0.033 DUF4705 1 PgpAPasrrpLqa 13 Pgp P r+ Lqa T324544_1 361 PGPTPSYRWLLQA 373 9***********6 PP == domain 11 score: 11.1 bits; conditional E-value: 1.9e-05 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA as++pLq + l++ +++ +s ++ T324544_1 384 PALASKWPLQEQNFLKSASPGPASCFP 410 9********************999876 PP == domain 12 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 1 PgpAPasrrpLqa..........paslqasg.lsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 +gpA as++ L+a p +l + g l rps+ L+vAs p+ p gL+r ssCL T324544_1 414 TGPASASQQTLHAqlfpvcclssPKLLLPFGnLYRPSSSLTVASFRPTHascnlpkcqllPHTGLLRLSSCL 485 8***********999999999998877665537899999999999888777788888888888888888887 PP == domain 13 score: 9.8 bits; conditional E-value: 5e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +++p + ++ l+ sgl rp++ L+v s+Gp l+ gL T324544_1 485 LWWPQR-AQPLPVSGLYRPGLYLTVGSPGPPLSHRGL 520 799998.*************************98877 PP == domain 14 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T324544_1 533 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 579 9********995..4689999**************************97 PP == domain 15 score: -1.4 bits; conditional E-value: 0.16 DUF4705 7 srrpLqapa 15 srrpLq ++ T324544_1 580 SRRPLQ-AQ 587 79****.66 PP == domain 16 score: 15.6 bits; conditional E-value: 7.5e-07 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasrrpLqa + T324544_1 595 PGPAPASRRPLQA-Q 608 9***********4.4 PP == domain 17 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsa 34 PgpAPasrrpL+ pas+++ l +ps++Lp+A++ T324544_1 616 PGPAPASRRPLRVqkflesaspgpapPASQWPL-LAQPSSCLPAAFP 661 9***********9********************.***********97 PP == domain 18 score: 23.8 bits; conditional E-value: 2.1e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+As+Gp++p++gLsrP+++L T324544_1 670 TGPASASQRTLHAqlalaslqppeskapasrplrqaqlppasglfrPMgLIPHNGLSRPSFSLPAASPGPEPPQVGLSRPTCSL 753 8*********************************************6515699*****************************98 PP == domain 19 score: 9.1 bits; conditional E-value: 8.3e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T324544_1 753 LPASSPGPALPPGCVSRPDCCL 774 9********************9 PP == domain 20 score: 21.7 bits; conditional E-value: 9.6e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T324544_1 774 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 807 6889****************************87 PP == domain 21 score: 57.8 bits; conditional E-value: 5.2e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T324544_1 812 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 859 9*********************************************..97 PP == domain 22 score: -2.1 bits; conditional E-value: 0.26 DUF4705 5 PasrrpLqa............paslqasglsrpsa 27 Pas++ L a p+ lq+s+++ p a T324544_1 860 PASKQALLAqllpssqppl*aPNFLQPSSSGPPTA 894 78888888888888888888899999997777754 PP == domain 23 score: 0.3 bits; conditional E-value: 0.048 DUF4705 2 gpAPasrrpLqa..p 14 gp asr+p qa T324544_1 890 GPPTASRWPVQAqlW 904 77789******6550 PP == domain 24 score: 2.9 bits; conditional E-value: 0.007 DUF4705 8 rrpLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 r +Lqa ++ ++ glsr s+++p+As+Gpk +p+g T324544_1 996 RLRLQArllppnnlfglsacpspgglgrptas*sqapqAQVRPHGGLSRISSCPPMASPGPKWSPVG 1062 4455557777777777777777777777777777776677779********************5554 PP == domain 25 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPssC 49 ++ ++ gl r s+++p As+Gpk+ pp+ L rP+sC T324544_1 1121 AQVRPHGGLARLSSCPPTASPGPKRppvggll*aqlgPPGDLCRPKSC 1168 555699*******************77777777777777777777777 PP == domain 26 score: 0.2 bits; conditional E-value: 0.048 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpkl...........p 39 rpLq ++++++ gl rp + L Gp + p T324544_1 1171 RPLQ-AQLQPPGGLCRPKSSLSWPGSGPGRaaswppraqlrP 1211 9***.9999999988888888655555544444421114445 PP == domain 27 score: -2.4 bits; conditional E-value: 0.32 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a+g+ +ps + ++++G + pp+gL rP T324544_1 1222 SSQPLQAqlllpPSGLfrpsPARGSQWPSQAPLLTFGGLFRprt*PPVGLCRP 1274 67999999999744444444899***************999999********9 PP == domain 28 score: -4.8 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP..ssC 49 A s++p qa p l+ gl+rps+ L+v s+ p + + +P ssC T324544_1 1243 ARGSQWPSQAplltfgglfrprt*ppvglcrPGFLPLEGLHRPSLSLTVDSPRPASSRLTAASPvqSSC 1311 555778888888888888888888888888888999999999999999988888877766666655555 PP == domain 29 score: 7.3 bits; conditional E-value: 0.0003 DUF4705 3 pAPasrrpL..qapaslqasglsrpsaq 28 pAPa+++pL q + +++glsrp++ T324544_1 1319 PAPACQWPL*aQ---LIPHNGLSRPRFS 1343 9*******9955...**********875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 5662.06 // Query: T324544_2 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-53 177.4 372.4 7.8e-17 61.1 7.3 36.1 33 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 16.7 0.39 6.3e+03 1 39 [. 14 76 .. 14 85 .. 0.63 2 ! 3.5 7.9 0.0047 77 1 50 [] 66 126 .. 66 126 .. 0.87 3 ! 3.3 0.2 0.0054 87 17 37 .. 126 146 .. 125 156 .. 0.75 4 ! 5.7 1.9 0.00099 16 2 26 .. 162 185 .. 161 187 .. 0.92 5 ! 6.1 4.2 0.00073 12 9 33 .. 190 224 .. 188 224 .. 0.66 6 ! 20.1 2.6 3e-08 0.00048 2 35 .. 226 258 .. 226 262 .. 0.93 7 ? 1.7 0.7 0.017 2.7e+02 29 49 .. 273 293 .. 267 293 .. 0.82 8 ! 5.2 1.0 0.0014 22 28 47 .. 334 353 .. 326 357 .. 0.85 9 ? -1.5 6.7 0.17 2.9e+03 6 24 .. 376 393 .. 354 397 .. 0.58 10 ! 7.9 9.5 0.00019 3.2 9 39 .. 400 440 .. 397 444 .. 0.82 11 ! 10.3 5.5 3.6e-05 0.58 1 32 [. 447 477 .. 447 478 .. 0.94 12 ! 3.1 2.8 0.0061 1e+02 19 43 .. 485 510 .. 481 515 .. 0.74 13 ! 16.0 13.0 5.6e-07 0.0092 1 38 [. 500 557 .. 500 566 .. 0.87 14 ! 4.5 3.2 0.0023 38 28 47 .. 568 587 .. 562 591 .. 0.87 15 ? -0.8 2.1 0.1 1.7e+03 12 49 .. 595 610 .. 588 619 .. 0.64 16 ? -1.7 10.3 0.2 3.3e+03 7 42 .. 632 665 .. 631 665 .. 0.87 17 ? -5.1 11.4 1 1.6e+04 1 26 [. 650 683 .. 650 683 .. 0.91 18 ! 16.3 2.2 4.6e-07 0.0076 12 36 .. 693 716 .. 688 722 .. 0.90 19 ? 1.1 0.1 0.026 4.2e+02 27 39 .. 719 731 .. 717 735 .. 0.86 20 ! 3.5 13.6 0.0048 78 7 38 .. 732 772 .. 727 786 .. 0.83 21 ! 3.1 0.9 0.006 98 1 19 [. 768 785 .. 768 800 .. 0.77 22 ! 16.6 2.3 3.7e-07 0.0061 1 26 [. 801 825 .. 801 827 .. 0.95 23 ? -6.5 11.5 1 1.6e+04 1 29 [. 834 872 .. 834 913 .. 0.47 24 ! 13.7 8.6 3e-06 0.049 18 50 .] 973 1005 .. 958 1005 .. 0.87 25 ! 18.6 1.6 9e-08 0.0015 22 50 .] 1010 1038 .. 1006 1038 .. 0.92 26 ! 57.1 7.2 8.7e-20 1.4e-15 1 50 [] 1043 1092 .. 1043 1092 .. 0.99 27 ! 26.7 3.4 2.7e-10 4.4e-06 17 50 .] 1092 1125 .. 1090 1125 .. 0.94 28 ! 61.1 7.3 4.8e-21 7.8e-17 1 50 [] 1130 1179 .. 1130 1179 .. 0.99 29 ! 14.2 0.4 2.1e-06 0.034 20 39 .. 1170 1189 .. 1168 1189 .. 0.92 30 ! 15.2 6.2 1e-06 0.016 20 50 .] 1202 1233 .. 1200 1233 .. 0.90 31 ! 3.5 1.1 0.0046 74 27 46 .. 1231 1252 .. 1230 1254 .. 0.73 32 ? -0.4 0.1 0.077 1.3e+03 29 38 .. 1256 1265 .. 1256 1278 .. 0.74 33 ! 20.1 12.9 3.1e-08 0.00051 1 38 [. 1283 1342 .. 1283 1345 .. 0.97 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.39 DUF4705 1 PgpAPasrrpL.qa....................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + l + s ++a +p As Gp++ p T324544_2 14 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaQNVLNS--ASPGRAHPPSASTGPSPasqqpP 76 8*********995446666777778877765542223333..35555677777777777655544 PP == domain 2 score: 3.5 bits; conditional E-value: 0.0047 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p a + + lsrp ++Lp+Asa +p g ++Ps +L T324544_2 66 TGPSPASQQPPLAqlllsclavsvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 126 79999999975566999999999977777888*************9999999999999887 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0054 DUF4705 17 lqasglsrpsaqLpvAsaGpk 37 l++ l + s +L+vAs+G + T324544_2 126 LPHGILRKLSICLTVASPGHE 146 55566666699********87 PP == domain 4 score: 5.7 bits; conditional E-value: 0.00099 DUF4705 2 gpAPasrrpLqapaslqasglsrps 26 gp a rr Lq +++l++ +l rp T324544_2 162 GPSHAKRRTLQ-AQLLPPGRLCRPK 185 789999*****.**********997 PP == domain 5 score: 6.1 bits; conditional E-value: 0.00073 DUF4705 9 rpLqa..........paslqasglsrpsaqLpvAs 33 +pL + p +l++s++srp +L +As T324544_2 190 WPLLTqllphvglhrPRLLPHSRPSRPTTCLSIAS 224 56654444444444488888888888888888876 PP == domain 6 score: 20.1 bits; conditional E-value: 3e-08 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+++ Lq +++l+ ++l rp+++ vA++ T324544_2 226 GQAPAFWQLLQ-AQLLPRNCLCRPRSCREVAFPS 258 89*********.*******************985 PP == domain 7 score: 1.7 bits; conditional E-value: 0.017 DUF4705 29 LpvAsaGpklppagLsrPssC 49 L A +G+ lpp g rP+s+ T324544_2 273 LQSAGPGQALPPNGFCRPKSS 293 666888999999999999986 PP == domain 8 score: 5.2 bits; conditional E-value: 0.0014 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T324544_2 334 LLQLASPDQALPPSGLYRPK 353 6889***************6 PP == domain 9 score: -1.5 bits; conditional E-value: 0.17 DUF4705 6 asrrpLqapaslqasglsr 24 +s +pL+ +++l+ sglsr T324544_2 376 TSSQPLH-TQLLPLSGLSR 393 3455666.66666666655 PP == domain 10 score: 7.9 bits; conditional E-value: 0.00019 DUF4705 9 rpLqa..........paslqasglsrpsaqLpvAsaGpklp 39 rpLqa ++ l++s+ s+ps+ L +As+ ++++ T324544_2 400 RPLQAqppasqghvqAQPLPHSRHSTPSSSLSAASPVQSCS 440 666666666666666*********************99997 PP == domain 11 score: 10.3 bits; conditional E-value: 3.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvA 32 +gpAP sr+pL +++++ + s++L++A T324544_2 447 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLA 477 8***********.*****9999999*****98 PP == domain 12 score: 3.1 bits; conditional E-value: 0.0061 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 + gl ps +L +As Gp ++ +L T324544_2 485 SGGLNGPSPCLSAASTGPAStSQWAL 510 56788888899999999865555554 PP == domain 13 score: 16.0 bits; conditional E-value: 5.6e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T324544_2 500 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 557 688888888888888888888888888888888**********************876 PP == domain 14 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 28 qLpvAsaGpklppagLsrPs 47 +L As+Gp lp +gL rP+ T324544_2 568 FLQSASPGPALPLGGLCRPR 587 5778***************6 PP == domain 15 score: -0.8 bits; conditional E-value: 0.1 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 q G+ pp++L rP+s+ T324544_2 595 Q----------------------GQLQPPGALCRPKSS 610 4......................444456666666554 PP == domain 16 score: -1.7 bits; conditional E-value: 0.2 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppag 42 s +pLqa +l++sgl +ps + As+ p++ppa+ T324544_2 632 SSQPLQAQLLLPPSGLFWPS--PAHASRRPSRPPAS 665 679***77789********9..89999999999985 PP == domain 17 score: -5.1 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqa........paslqasglsrps 26 P pA asrrp + ++ +++sgls+ps T324544_2 650 PSPAHASRRPSRPpas*rpaqAQPQPHSGLSTPS 683 78999***9999899999999999********97 PP == domain 18 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 12 qapaslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T324544_2 693 S-PKLLPLGRFGRPSSRLPVASSGP 716 4.999*******************9 PP == domain 19 score: 1.1 bits; conditional E-value: 0.026 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A+ Gp++p T324544_2 719 SFLTTAFLGPVFP 731 79*********97 PP == domain 20 score: 3.5 bits; conditional E-value: 0.0048 DUF4705 7 srrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 +rrpL+a p+ l+ ++++ r+ ++Lp+As+Gp+ T324544_2 732 FRRPLRAqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 772 79*************766651678***************87 PP == domain 21 score: 3.1 bits; conditional E-value: 0.006 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pgp as++pL +++l+ T324544_2 768 PGPTAASQQPLW-TQRLPI 785 9**********9.888874 PP == domain 22 score: 16.6 bits; conditional E-value: 3.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324544_2 801 PGPGQASRWPLQ-DQLLPSDGVSRPQ 825 9***********.9***********7 PP == domain 23 score: -6.5 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s + + +++ T324544_2 834 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKPFWLNSCP 872 6677766.55577766666666665555543333322222 PP == domain 24 score: 13.7 bits; conditional E-value: 3e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsr Lp++s+Gp lpp+ srP +CL T324544_2 973 PQVGLSRLTCSLPASSPGPALPPGCVSRPDCCL 1005 789*****************************9 PP == domain 25 score: 18.6 bits; conditional E-value: 9e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssCL 50 l +++a L +A +Gp+lp+a+L rP+s L T324544_2 1010 LDSAPAHLLAALVGPQLPEAKLPRPRSGL 1038 5699***********************87 PP == domain 26 score: 57.1 bits; conditional E-value: 8.7e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa++++Lqap+ l+++g+s+ps++L ++saGp++p++g srP s L T324544_2 1043 PGSAPALQWRLQAPNGLRSVGSSTPSLGLLATSAGPSRPEVGVSRPDSGL 1092 9**********************************************987 PP == domain 27 score: 26.7 bits; conditional E-value: 2.7e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ +l +++aqLpvA +Gp+lp+a+L rP+s L T324544_2 1092 LPTMSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1125 78899***************************87 PP == domain 28 score: 61.1 bits; conditional E-value: 4.8e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+rr+Lqap+ l+++g+srps++Lp++saG ++ ++gLsrPss+L T324544_2 1130 PGSAPALRRHLQAPNGLRSVGSSRPSLGLPATSAGLNRAEVGLSRPSSSL 1179 9***********************************************98 PP == domain 29 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 20 sglsrpsaqLpvAsaGpklp 39 +glsrps+ Lp+AsaG ++p T324544_2 1170 VGLSRPSSSLPAASAGLSRP 1189 79**************9987 PP == domain 30 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324544_2 1202 VGLPGPSSVLSAASPGAKLPRVSLSRPSfSCL 1233 67888**********************96676 PP == domain 31 score: 3.5 bits; conditional E-value: 0.0046 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324544_2 1231 SCLPVASFGPAQlvALSGLPRP 1252 7*********874544455555 PP == domain 32 score: -0.4 bits; conditional E-value: 0.077 DUF4705 29 LpvAsaGpkl 38 L vAs Gp+l T324544_2 1256 LLVASSGPEL 1265 7899999998 PP == domain 33 score: 20.1 bits; conditional E-value: 3.1e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpkl 38 +gpA as++ L+a +++l+asgl rps++L+ A++Gp++ T324544_2 1283 TGPASASQWTLHAqlalaslrppqskapafrplwqSQLLPASGLFRPSSFLTTAFPGPVF 1342 8*********************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 5908.24 // Query: T324544_3 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-76 249.8 350.6 3.9e-08 33.2 7.8 35.8 32 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.2 7.8 2.4e-12 3.9e-08 2 50 .] 4 51 .. 3 51 .. 0.97 2 ? 1.5 0.1 0.02 3.2e+02 10 28 .. 64 81 .. 52 81 .. 0.82 3 ? 0.1 2.9 0.052 8.5e+02 1 33 [. 99 131 .. 99 133 .. 0.90 4 ! 17.2 4.9 2.5e-07 0.0041 4 44 .. 135 192 .. 135 192 .. 0.98 5 ! 11.6 0.1 1.4e-05 0.23 14 37 .. 226 249 .. 217 253 .. 0.89 6 ! 25.4 3.7 6.6e-10 1.1e-05 15 50 .] 269 304 .. 250 304 .. 0.80 7 ! 18.5 0.6 9.5e-08 0.0015 23 48 .. 339 364 .. 335 364 .. 0.89 8 ! 24.6 0.9 1.2e-09 1.9e-05 29 50 .] 366 387 .. 366 387 .. 0.99 9 ! 11.9 0.7 1.1e-05 0.18 31 47 .. 389 405 .. 389 408 .. 0.94 10 ! 5.3 0.9 0.0013 21 14 39 .. 404 429 .. 404 433 .. 0.89 11 ! 10.5 2.6 2.9e-05 0.48 4 30 .. 439 464 .. 437 467 .. 0.92 12 ! 2.5 0.3 0.0094 1.5e+02 3 18 .. 470 484 .. 469 488 .. 0.85 13 ! 20.5 14.6 2.2e-08 0.00036 1 50 [] 489 537 .. 489 537 .. 0.91 14 ! 8.0 3.3 0.00018 3 21 38 .. 529 546 .. 518 554 .. 0.82 15 ! 22.0 6.1 7.6e-09 0.00012 2 50 .] 543 600 .. 543 600 .. 0.81 16 ! 21.1 7.1 1.5e-08 0.00025 21 50 .] 592 621 .. 592 621 .. 0.97 17 ! 14.6 11.2 1.6e-06 0.027 15 49 .. 607 641 .. 602 642 .. 0.93 18 ! 5.3 11.1 0.0012 20 17 50 .] 630 675 .. 628 675 .. 0.82 19 ! 3.1 4.2 0.006 98 14 36 .. 660 682 .. 652 691 .. 0.86 20 ! 12.2 11.7 9.2e-06 0.15 2 49 .. 704 762 .. 703 762 .. 0.90 21 ? 0.8 23.5 0.032 5.2e+02 10 42 .. 766 830 .. 737 849 .. 0.72 22 ! 31.5 5.5 8.3e-12 1.4e-07 20 50 .] 864 894 .. 853 894 .. 0.95 23 ! 10.9 9.7 2.2e-05 0.36 1 38 [. 899 1003 .. 899 1009 .. 0.96 24 ! 17.6 2.6 1.9e-07 0.003 1 26 [. 1032 1056 .. 1032 1058 .. 0.95 25 ! 8.5 11.7 0.00013 2.1 1 18 [. 1065 1094 .. 1065 1108 .. 0.73 26 ! 9.9 5.3 4.6e-05 0.75 1 26 [. 1119 1143 .. 1119 1145 .. 0.96 27 ! 12.4 0.2 7.7e-06 0.13 2 13 .. 1153 1164 .. 1153 1172 .. 0.87 28 ! 14.5 0.9 1.7e-06 0.028 1 13 [. 1173 1185 .. 1173 1200 .. 0.92 29 ! 16.7 9.3 3.6e-07 0.0058 1 37 [. 1205 1253 .. 1205 1255 .. 0.95 30 ! 2.6 14.5 0.0092 1.5e+02 1 26 [. 1250 1296 .. 1250 1296 .. 0.73 31 ! 15.5 5.3 8.3e-07 0.014 14 38 .. 1307 1331 .. 1303 1340 .. 0.88 32 ? 2.2 0.1 0.012 1.9e+02 2 19 .. 1328 1345 .. 1328 1347 .. 0.86 Alignments for each domain: == domain 1 score: 33.2 bits; conditional E-value: 2.4e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+r+pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T324544_3 4 GEAPAFRQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 51 89*********.*********************************9887 PP == domain 2 score: 1.5 bits; conditional E-value: 0.02 DUF4705 10 pLqapaslqasglsrpsaq 28 +Lq + +l+++ l +p ++ T324544_3 64 RLQ-ARLLPHNNLLWPNSC 81 678.9**********9998 PP == domain 3 score: 0.1 bits; conditional E-value: 0.052 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp as++p q sl a s+ s +L+++s T324544_3 99 PGPPSASQQPQQSNYSLTAATESQVSPCLTASS 131 89999*****99888999999999999999987 PP == domain 4 score: 17.2 bits; conditional E-value: 2.5e-07 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa ++ + glsr s++L + saGp+ p++gLs T324544_3 135 AFASRWPPQAmnlpasqaaaasqwsl*AQVMLKDGLSRHSSCLLAGSAGPNSPKVGLS 192 88******************************************************97 PP == domain 5 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ ++ rps++L +A++G+ T324544_3 226 AKLLPFGSFYRPSSCLAIAFVGQD 249 6789999***************95 PP == domain 6 score: 25.4 bits; conditional E-value: 6.6e-10 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++ ++s + ++ ++Lp AsaG+++p++ L rPssCL T324544_3 269 PKTSSSQPVQAKLFLPTASAGQNRPEVTLCRPSSCL 304 55566667799************************9 PP == domain 7 score: 18.5 bits; conditional E-value: 9.5e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T324544_3 339 LQTKLSLPVASTGQNCPQVSLSRANS 364 578899*****************976 PP == domain 8 score: 24.6 bits; conditional E-value: 1.2e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T324544_3 366 LPVASAGQNRPQVSLFTPSSCL 387 8********************9 PP == domain 9 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 31 vAsaGpklppagLsrPs 47 vAs+G klp++gLsrPs T324544_3 389 VASPGAKLPQVGLSRPS 405 8***************7 PP == domain 10 score: 5.3 bits; conditional E-value: 0.0013 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ ++ p lp T324544_3 404 PSLLLPKGMYRPSLCLTADTPRPALP 429 678999************99999887 PP == domain 11 score: 10.5 bits; conditional E-value: 2.9e-05 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ q +++l++ gl +p ++L T324544_3 439 APAFRQLVQ-AQLLPHGGLFSPNSCLL 464 9*****888.***************95 PP == domain 12 score: 2.5 bits; conditional E-value: 0.0094 DUF4705 3 pAPasrrpLqapaslq 18 +APas++p +++++ T324544_3 470 SAPASHWPVE-AQLMP 484 6*******99.88887 PP == domain 13 score: 20.5 bits; conditional E-value: 2.2e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa++rpLq + l++sglsrp ++ p ++ + ++L PssCL T324544_3 489 TGPAPACQRPLQ-ARPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 537 8***********.***************99876666667899*******9 PP == domain 14 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T324544_3 529 SLCGPSSCLPVASVGQAR 546 5667***********986 PP == domain 15 score: 22.0 bits; conditional E-value: 7.6e-09 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++L +AsaGp ++++gLsr+ss+L T324544_3 543 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLSAASAGPDCRQVGLSRASSSL 600 678888888888888888852.44311567899************************98 PP == domain 16 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPssCL 50 glsr+s+ Lp+ saGp++p++gL rPss L T324544_3 592 GLSRASSSLPAPSAGPSRPQVGLPRPSSGL 621 89**************************87 PP == domain 17 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 +s +++gl rps++L +A +G k p ++LsrPss+ T324544_3 607 PSRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 641 67799****************************97 PP == domain 18 score: 5.3 bits; conditional E-value: 0.0012 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++LpvAs Gp pp gL rPs +L T324544_3 630 VPRVSLSRPSsSCLPVASFGPAQlmppgglpgllPPEGLHRPSLSL 675 57899***9637*********9999888888888888888888765 PP == domain 19 score: 3.1 bits; conditional E-value: 0.006 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l++ gl+rps+ L++ s+ p T324544_3 660 PGLLPPEGLHRPSLSLTADSPRP 682 779**************988766 PP == domain 20 score: 12.2 bits; conditional E-value: 9.2e-06 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gls p+ + +s++ + pp++Ls Pss+ T324544_3 704 GPAPACQWPLQAhgahssqrpf*AQFFPSGGLSGPR---TSSSRPLQThlqPPGVLSGPSSS 762 9********************************998...56778777778899999999997 PP == domain 21 score: 0.8 bits; conditional E-value: 0.032 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p+g T324544_3 766 RLQArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVG 830 45556666666666666666666666777777775577779********************5554 PP == domain 22 score: 31.5 bits; conditional E-value: 8.3e-12 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 s +++++aqLp+A++Gp+l+pa+L+ P++CL T324544_3 864 SPFGSTPAQLPAAFVGPELSPAKLFGPTYCL 894 569***************************9 PP == domain 23 score: 10.9 bits; conditional E-value: 2.2e-05 DUF4705 1 PgpAPasrrpLqa..................................................................paslqasg.lsrpsaqLpv 31 +gpA a ++pLqa p+sl+as+ + r+ ++Lp+ T324544_3 899 TGPALAVEQPLQAtgrqyvglkslaaetsgstntggs*akracllggrswaercsqeeqlglqrppcgrqrpgllksasPDSLAASRhPLRAQLFLPA 996 8**********************************************************************************9876489******** PP DUF4705 32 AsaGpkl 38 As+Gp+ T324544_3 997 ASPGPTA 1003 *****86 PP == domain 24 score: 17.6 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l+++g srp T324544_3 1032 PGPGQASRWPLQ-DQLLPSNGVSRPQ 1056 9***********.9***********7 PP == domain 25 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 1 PgpAPasrrpLqa............paslq 18 P+pA+as+rpLqa pas+q T324544_3 1065 PRPAWASWRPLQAqvvlksaspgptPASQQ 1094 99**********866666666665555554 PP == domain 26 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+p q +++l++ g srp T324544_3 1119 PGPGQASRWPRQ-AQLLPSDGISRPQ 1143 9***********.***********96 PP == domain 27 score: 12.4 bits; conditional E-value: 7.7e-06 DUF4705 2 gpAPasrrpLqa 13 gpA+asrrpLqa T324544_3 1153 GPAWASRRPLQA 1164 9**********7 PP == domain 28 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T324544_3 1173 PGPAPASRRPLQA 1185 9***********6 PP == domain 29 score: 16.7 bits; conditional E-value: 3.6e-07 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpL pas+++ + +ps+ L vA++Gp T324544_3 1205 PGPAPSSRRPLPVqnflesaspgpasPASQWPL-SAQPSSWLSVAFPGPA 1253 9**********7788******************.89*************7 PP == domain 30 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps 26 PgpA +++pLqa ++ +++sgls+ps T324544_3 1250 PGPAFDFWWPLQAqnltssrplqawlpasrrpaqAQPQPHSGLSTPS 1296 9***********77777777777777777776666667777777665 PP == domain 31 score: 15.5 bits; conditional E-value: 8.3e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l+ ++++ps++LpvAs Gp T324544_3 1307 PKLLPFGRFGSPSSCLPVASLGPAH 1331 8999*******************87 PP == domain 32 score: 2.2 bits; conditional E-value: 0.012 DUF4705 2 gpAPasrrpLqapaslqa 19 gpA s+rp qap l++ T324544_3 1328 GPAHSSQRPFQAPFFLAS 1345 8**********9877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 6570.68 // Query: T155181_1 [L=2896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.72 # Mc/sec: 11506.89 // Query: T155181_2 [L=2896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.91 # Mc/sec: 9104.36 // Query: T155181_3 [L=2895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.70 # Mc/sec: 11831.58 // Query: T150925_1 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.73 # Mc/sec: 9362.36 // Query: T150925_2 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 9362.36 // Query: T150925_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 9358.44 // Query: T093527_1 [L=2631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:00.74 # Mc/sec: 10171.41 // Query: T093527_2 [L=2630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 10904.32 // Query: T093527_3 [L=2630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 9899.98 // Query: T210848_1 [L=3073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 11880.18 // Query: T210848_2 [L=3073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 11417.31 // Query: T210848_3 [L=3073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.76 # Mc/sec: 11567.54 // Query: T325338_1 [L=1419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.076 12.5 0.1 0.13 11.7 0.1 1.2 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.1 7.8e-06 0.13 65 111 .. 1196 1242 .. 1162 1245 .. 0.87 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7.8e-06 DUF4417 65 kqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 ++ ++++ Pdf ly+ a ++ +w y++r i ++ ++ ++ P++ T325338_1 1196 NKARGIMLPDFKLYYKATITKTAWYWYQNRDIDQWNRTESSEITPHI 1242 45599*********************************999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 5799.31 // Query: T325338_2 [L=1419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 5799.31 // Query: T325338_3 [L=1418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.59 # Mc/sec: 6875.69 // Query: T177398_1 [L=2482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.77 # Mc/sec: 9221.53 // Query: T177398_2 [L=2481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.77 # Mc/sec: 9217.82 // Query: T177398_3 [L=2481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.77 # Mc/sec: 9217.82 // Query: T179758_1 [L=888] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (888 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 5184.52 // Query: T179758_2 [L=888] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (888 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.66 # Mc/sec: 3849.12 // Query: T179758_3 [L=887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.6 0.2 0.12 12.3 0.2 1.6 1 DUF4801 Domain of unknown function (DUF4801) 0.052 12.7 0.5 0.23 10.6 0.5 2.2 1 DUF3678 Protein of unknown function (DUF3678) Domain annotation for each model (and alignments): >> DUF4801 Domain of unknown function (DUF4801) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.2 1.4e-05 0.12 10 27 .. 854 871 .. 851 875 .. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.4e-05 DUF4801 10 kdyCqlGCiCdslassek 27 k+yC CiC+sl ++e+ T179758_3 854 KKYCDSSCICASLITKEQ 871 89***********98876 PP >> DUF3678 Protein of unknown function (DUF3678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.5 2.8e-05 0.23 13 25 .. 389 407 .. 383 410 .. 0.76 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 2.8e-05 DUF3678 13 a......sSSSssmlHrql 25 +SSSss++H ++ T179758_3 389 KeswllfPSSSSSPSHQRR 407 45555669*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (887 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 4375.10 // Query: T196280_1 [L=3653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.75 # Mc/sec: 13934.15 // Query: T196280_2 [L=3653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.35s 00:00:01.72 Elapsed: 00:00:00.79 # Mc/sec: 13228.62 // Query: T196280_3 [L=3652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.84 # Mc/sec: 12437.80 // Query: T181486_1 [L=1467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 6171.82 // Query: T181486_2 [L=1467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.71 # Mc/sec: 5911.04 // Query: T181486_3 [L=1467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 6769.09 // Query: T316415_1 [L=4914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.34s 00:00:02.04 Elapsed: 00:00:00.86 # Mc/sec: 16346.65 // Query: T316415_2 [L=4913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.40s 00:00:01.95 Elapsed: 00:00:00.72 # Mc/sec: 19521.19 // Query: T316415_3 [L=4913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.43s 00:00:02.10 Elapsed: 00:00:00.78 # Mc/sec: 18019.56 // Query: T090174_1 [L=4402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.41s 00:00:02.04 Elapsed: 00:00:00.88 # Mc/sec: 14310.65 // Query: T090174_2 [L=4402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.42s 00:00:02.03 Elapsed: 00:00:00.80 # Mc/sec: 15741.72 // Query: T090174_3 [L=4401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.43s 00:00:02.03 Elapsed: 00:00:00.83 # Mc/sec: 15169.29 // Query: T227883_1 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 4123.23 // Query: T227883_2 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4552.23 // Query: T227883_3 [L=907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 4253.73 // Query: T172463_1 [L=2681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.78 # Mc/sec: 9833.19 // Query: T172463_2 [L=2681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.73 # Mc/sec: 10506.69 // Query: T172463_3 [L=2681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:00.76 # Mc/sec: 10091.95 // Query: T089752_1 [L=3518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1233 (0.0756163); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 106 (0.00650067); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.51u 0.49s 00:00:03.00 Elapsed: 00:00:00.99 # Mc/sec: 10166.06 // Query: T089752_2 [L=3518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.6 1.9 12 6.2 0.3 3.7 4 DUF912 Nucleopolyhedrovirus protein of unknown function (D Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.3 0.00072 12 34 88 .. 1710 1758 .. 1706 1773 .. 0.44 2 ? 1.9 0.0 0.016 2.6e+02 45 83 .. 2812 2848 .. 2798 2850 .. 0.38 3 ? -0.4 0.0 0.077 1.3e+03 38 76 .. 2864 2903 .. 2852 2905 .. 0.37 4 ? -1.0 0.0 0.12 1.9e+03 52 80 .. 2978 3004 .. 2955 3008 .. 0.39 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00072 DUF912 34 aenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvi 88 +++++ +++++++++ +++++n +++ l+i +i + +++++ +++ + +i T089752_2 1710 HHQHNYHHHQYNHHHYHHHHHN---HHHYLHITMIIITTIITITIIITIT---II 1758 3344444444444444444444...3333333333333333333333222...22 PP == domain 2 score: 1.9 bits; conditional E-value: 0.016 DUF912 45 eknditekesnaaekaqalnillisllavvcvlvllyvi 83 ++++ ++ + ++++++ + i+++ +++++++ +i T089752_2 2812 QHHHHHHYH--HHHHHHHHHHHHITIIITITIIIIITII 2848 111222222..2233333333344444444444444444 PP == domain 3 score: -0.4 bits; conditional E-value: 0.077 DUF912 38 kekksaaeknditekesn.aaekaqalnillisllavvcv 76 ++ +s++++++ ++++++ ++++ q + i+++ +++ T089752_2 2864 SSPSSSSSHHNHHHDHHHhHHHHDQHHITITITIIITITI 2903 3322222222222222221233334344444444444444 PP == domain 4 score: -1.0 bits; conditional E-value: 0.12 DUF912 52 kesn.aaekaqalnillisllavvcvlvll 80 ++++ ++++++ ++i+++a v++ + T089752_2 2978 SHHHhHHHHHHHHITIIITIIA---VIITI 3004 2222112222222333333333...33332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 834 (0.0511468); expected 326.1 (0.02) Passed bias filter: 293 (0.0179688); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.58u 0.49s 00:00:03.07 Elapsed: 00:00:00.99 # Mc/sec: 10166.06 // Query: T089752_3 [L=3518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.68 10.8 16.8 1.1 10.1 0.1 4.1 4 DUF4834 Domain of unknown function (DUF4834) Domain annotation for each model (and alignments): >> DUF4834 Domain of unknown function (DUF4834) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 0.0 0.00015 2.5 7 71 .. 1715 1814 .. 1706 1825 .. 0.54 2 ? 3.0 0.4 0.011 1.9e+02 10 43 .. 2807 2852 .. 2796 2873 .. 0.27 3 ? 10.1 0.1 7e-05 1.1 9 76 .. 2873 2939 .. 2869 2972 .. 0.45 4 ? -6.8 4.2 1 1.6e+04 2 16 .. 3027 3041 .. 3026 3043 .. 0.54 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00015 DUF4834 7 i.lifiiailviglsilsvilrtv...................................fglgsrkkssksaqkqfgnstnsnqqktq........sr 60 i +i ii+ +i ++i+ +i t+ + +++++++++++++++++++ + T089752_3 1715 ItTINIIITTIITIIIIITITSTLp*sssplsspspslspsp*sspsspphyhyhhhhhY---------QNHHHHHHYHYHQHHHHHHqnhhyhhqYH 1803 356778888999999999999999*******99999999999999999998654433322.........22222222222222222111111110012 PP DUF4834 61 sstkeegeiie 71 ++++++++ ++ T089752_3 1804 HHQYHHHHYHH 1814 22222222222 PP == domain 2 score: 3.0 bits; conditional E-value: 0.011 DUF4834 10 fiiailviglsilsvilrtv............fg...lgsrkkssksaq 43 ii+i +i ++i+ + ++ +s ++ss++++ T089752_3 2807 TIIIINIITITIIITT---TtiititiitspsLSpspSSSSSPSSHHHH 2852 2333333333222221...111122222222222211122222221111 PP == domain 3 score: 10.1 bits; conditional E-value: 7e-05 DUF4834 9 ifiiailviglsilsvilrtvfg.lgsrkkssksaqkqfgnstnsnqqktq........srsstkeegeiieeerse 76 +ii+i +i ++i+ i+ + +s ++ss++++++++++ ++++++++ + +++++++ T089752_3 2873 TIIIMITIITIIIMISIISPSPSpSSSPSPSSHHHHHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHH 2939 467777777777777777766332233333332222222222222211111111111111..........1111111 PP == domain 4 score: -6.8 bits; conditional E-value: 1 DUF4834 2 hfLlfilifiiailv 16 h++ i+i+ii+ ++ T089752_3 3027 HIIITITIIIIITII 3041 566666555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 941 (0.0577088); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.03u 0.40s 00:00:02.42 Elapsed: 00:00:00.71 # Mc/sec: 14175.21 // Query: T000088_1 [L=2467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 13316.35 // Query: T000088_2 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 13566.94 // Query: T000088_3 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 80 (0.00490617); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 12597.87 // Query: T166434_1 [L=1454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 7297.63 // Query: T166434_2 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7557.79 // Query: T166434_3 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 7557.79 // Query: T037862_1 [L=485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 2617.93 // Query: T037862_2 [L=485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2668.27 // Query: T037862_3 [L=485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 2617.93 // Query: T348534_1 [L=1277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6523.71 // Query: T348534_2 [L=1276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 6637.13 // Query: T348534_3 [L=1276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.2 7.6 10.8 0.98 9.6 0.4 2.7 3 PDGF PDGF/VEGF domain Domain annotation for each model (and alignments): >> PDGF PDGF/VEGF domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.4 6e-05 0.98 29 58 .. 365 394 .. 358 421 .. 0.81 2 ? -2.8 0.2 0.47 7.6e+03 65 81 .. 969 985 .. 966 985 .. 0.81 3 ? 4.5 0.7 0.0024 39 34 65 .. 1220 1252 .. 1218 1264 .. 0.74 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 6e-05 PDGF 29 vqRCsGCCndesleCvptetekvtvqvlki 58 RC GC +++s +C p + +v++q+ + T348534_3 365 AARCMGCAGEDSSRCWPRHLLHVRLQLDQA 394 57******************9999999887 PP == domain 2 score: -2.8 bits; conditional E-value: 0.47 PDGF 65 kkkklvevsleehvkCe 81 kkk++ ++++++h+ C+ T348534_3 969 KKKTTNSMEVKQHHICN 985 56777899999**9995 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0024 PDGF 34 GCCndesleCvptetekvtvqvlki.keakkkk 65 GC + +s++C+p t+ ++ + k k+a+kkk T348534_3 1220 GCSEPRSCHCTPAWTTRAKLCLKKKkKNATKKK 1252 9***************99999998833333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 6760.04 // Query: T111410_1 [L=3060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.61 # Mc/sec: 14351.05 // Query: T111410_2 [L=3059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 14832.68 // Query: T111410_3 [L=3059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 7.4 22.9 1.5 6.8 22.9 1.1 1 SSP160 Special lobe-specific silk protein SSP160 Domain annotation for each model (and alignments): >> SSP160 Special lobe-specific silk protein SSP160 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 22.9 8.9e-05 1.5 671 706 .. 1685 1721 .. 1674 1756 .. 0.54 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 8.9e-05 SSP160 671 gsvpdeattttssttttttttttaapttttt.kaana 706 sv ++tttt++tttt+ttttt++ ttttt ++ a T111410_3 1685 CSVTTATTTTTTTTTTTATTTTTTTTTTTTTtTTTTA 1721 4665555555444444433333332222222022222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 662 (0.0405986); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.62 # Mc/sec: 14114.97 // Query: T358926_1 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6850.10 // Query: T358926_2 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6844.80 // Query: T358926_3 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 7108.06 // Query: T358009_1 [L=2149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1322 (0.0810745); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.62 # Mc/sec: 9916.01 // Query: T358009_2 [L=2149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1065 (0.0653134); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.59 # Mc/sec: 10420.21 // Query: T358009_3 [L=2149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1085 (0.0665399); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 9916.01 // Query: T099790_1 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 1912.83 // Query: T099790_2 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 67 (0.00410892); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 1876.04 // Query: T099790_3 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.53 # Mc/sec: 1835.25 // Query: T284219_1 [L=227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.65 # Mc/sec: 999.09 // Query: T284219_2 [L=227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-08 32.9 12.4 3.8e-05 23.7 1.6 2.7 2 Ldl_recept_a Low-density lipoprotein receptor domain class A ------ inclusion threshold ------ 0.18 11.5 5.1 0.26 11.0 5.1 1.2 1 PRKCSH-like Glucosidase II beta subunit-like Domain annotation for each model (and alignments): >> Ldl_recept_a Low-density lipoprotein receptor domain class A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 1.6 4.6e-09 3.8e-05 6 34 .. 40 69 .. 31 73 .. 0.86 2 ! 13.6 3.5 6.5e-06 0.053 8 33 .. 87 113 .. 84 116 .. 0.85 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 4.6e-09 SCEEETTSE.EEEGGGTTSSSTTSSSSGGG CS Ldl_recept_a 6 nefqCgsge.CIprswvCdgeaDCeDgSDE 34 f C++ + C p s C+g+ DC+ g+DE T284219_2 40 LGFLCEDLStCLPPSQLCNGKLDCSQGEDE 69 4699***999******************** PP == domain 2 score: 13.6 bits; conditional E-value: 6.5e-06 EEETTSE.EEEGGGTTSSSTTSSSSGG CS Ldl_recept_a 8 fqCgsge.CIprswvCdgeaDCeDgSD 33 f+C +++ +++vCd ++DC D SD T284219_2 87 FKCPNQKtWTYMDKVCDTRNDCGDCSD 113 6777776667789*************9 PP >> PRKCSH-like Glucosidase II beta subunit-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 5.1 3.1e-05 0.26 51 111 .. 54 115 .. 30 123 .. 0.87 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 3.1e-05 PRKCSH-like 51 dqvnddycdcPdGsdePGtsacengkfycaneGyisgyiesfkvddgvcdy.diccdGsdee 111 +q+ + dc G deP t + + ++ +n + +++ d vcd + c d sd + T284219_2 54 SQLCNGKLDCSQGEDEPATHSSQMPNSLPQNLIFKCPNQKTWTYMDKVCDTrNDCGDCSDKS 115 56666678****************************99************724688999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.51 # Mc/sec: 1273.35 // Query: T284219_3 [L=226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 1267.74 // Query: T124834_1 [L=3064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 13082.96 // Query: T124834_2 [L=3063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.74 # Mc/sec: 11841.52 // Query: T124834_3 [L=3063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 12341.86 // Query: T346526_1 [L=615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.73 # Mc/sec: 2410.15 // Query: T346526_2 [L=615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 2884.28 // Query: T346526_3 [L=614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 2927.58 // Query: T164874_1 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 4742.04 // Query: T164874_2 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 4671.27 // Query: T164874_3 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.77 # Mc/sec: 4064.61 // Query: T381589_1 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.76 # Mc/sec: 5021.51 // Query: T381589_2 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.76 # Mc/sec: 5021.51 // Query: T381589_3 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 5530.94 // Query: T187573_1 [L=3405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 912 (0.0559303); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.79 # Mc/sec: 12330.54 // Query: T187573_2 [L=3405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 954 (0.0585061); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.40s 00:00:02.06 Elapsed: 00:00:00.76 # Mc/sec: 12817.27 // Query: T187573_3 [L=3404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 837 (0.0513308); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.39s 00:00:01.99 Elapsed: 00:00:00.83 # Mc/sec: 11732.85 // Query: T315707_1 [L=2092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 8198.43 // Query: T315707_2 [L=2092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.78 # Mc/sec: 7672.89 // Query: T315707_3 [L=2092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 8673.70 // Query: T196970_1 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 4412.61 // Query: T196970_2 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 4697.30 // Query: T196970_3 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.77 # Mc/sec: 3778.52 // Query: T107166_1 [L=5453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.36s 00:00:02.14 Elapsed: 00:00:00.94 # Mc/sec: 16595.86 // Query: T107166_2 [L=5453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.37s 00:00:02.09 Elapsed: 00:00:00.86 # Mc/sec: 18139.66 // Query: T107166_3 [L=5452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.41s 00:00:02.11 Elapsed: 00:00:00.81 # Mc/sec: 19255.86 // Query: T155508_1 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.74 # Mc/sec: 11748.73 // Query: T155508_2 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.76 # Mc/sec: 11439.56 // Query: T155508_3 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.79 # Mc/sec: 11005.14 // Query: T259334_1 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 6187.57 // Query: T259334_2 [L=1514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 6369.55 // Query: T259334_3 [L=1513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 6183.48 // Query: T137489_1 [L=3177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.73 # Mc/sec: 12450.49 // Query: T137489_2 [L=3177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.74 # Mc/sec: 12282.24 // Query: T137489_3 [L=3176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 12797.18 // Query: T164907_1 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 7093.89 // Query: T164907_2 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 6246.86 // Query: T164907_3 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 6246.86 // Query: T246151_1 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 18.2 0.0 0.0023 17.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 1.4e-07 0.0023 124 162 .. 773 813 .. 759 817 .. 0.85 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 1.4e-07 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T........T CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkra..kgvt 162 ++ + +g++qG +lS llfn++++ l r +r++ kg++ T246151_1 773 KHPPLRTGTRQGYPLSSLLFNIVLEVLARAIRQEKerKGIQ 813 5667889*************************987665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 6508.39 // Query: T246151_2 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 6101.61 // Query: T246151_3 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 5828.41 // Query: T278490_1 [L=1918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.71 # Mc/sec: 7728.27 // Query: T278490_2 [L=1918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.60 # Mc/sec: 9145.12 // Query: T278490_3 [L=1917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.60 # Mc/sec: 9140.35 // Query: T130482_1 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3495.93 // Query: T130482_2 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3495.93 // Query: T130482_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 3427.39 // Query: T366904_1 [L=1020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 5611.63 // Query: T366904_2 [L=1019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 4416.95 // Query: T366904_3 [L=1019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 4778.99 // Query: T323217_1 [L=1233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-36 122.7 262.1 8.6e-09 35.3 6.9 22.2 20 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.1 0.099 1.6e+03 38 47 .. 33 42 .. 32 44 .. 0.79 2 ? 0.4 0.1 0.043 7e+02 7 34 .. 45 71 .. 40 73 .. 0.86 3 ! 35.3 6.9 5.3e-13 8.6e-09 3 49 .. 73 118 .. 71 119 .. 0.96 4 ! 31.8 7.1 6.9e-12 1.1e-07 1 38 [. 124 160 .. 124 170 .. 0.93 5 ! 24.8 4.6 1e-09 1.7e-05 5 38 .. 171 203 .. 165 212 .. 0.92 6 ! 23.7 6.3 2.2e-09 3.6e-05 5 38 .. 215 247 .. 214 250 .. 0.95 7 ! 11.4 3.3 1.6e-05 0.25 1 34 [. 243 271 .. 243 281 .. 0.77 8 ! 33.8 15.6 1.6e-12 2.6e-08 1 42 [. 285 325 .. 285 344 .. 0.81 9 ! 34.2 4.4 1.2e-12 2e-08 19 50 .] 358 389 .. 347 389 .. 0.95 10 ! 16.3 20.9 4.7e-07 0.0076 1 50 [] 394 455 .. 394 455 .. 0.88 11 ? -1.6 0.4 0.18 2.9e+03 5 22 .. 481 511 .. 463 521 .. 0.70 12 ? -5.4 5.5 1 1.6e+04 6 42 .. 531 570 .. 527 602 .. 0.65 13 ? -2.1 1.7 0.27 4.4e+03 6 23 .. 624 654 .. 612 678 .. 0.62 14 ? -8.7 8.8 1 1.6e+04 6 37 .. 673 734 .. 670 757 .. 0.52 15 ! 3.6 0.9 0.0044 71 8 27 .. 876 894 .. 873 896 .. 0.87 16 ! 12.0 10.7 1e-05 0.17 14 48 .. 935 981 .. 931 982 .. 0.74 17 ? -5.0 12.2 1 1.6e+04 9 45 .. 985 1030 .. 984 1034 .. 0.62 18 ? -4.6 14.6 1 1.6e+04 7 46 .. 1035 1087 .. 1034 1089 .. 0.80 19 ? 0.6 2.1 0.039 6.3e+02 16 34 .. 1101 1119 .. 1089 1125 .. 0.72 20 ! 23.5 3.2 2.7e-09 4.4e-05 2 36 .. 1131 1164 .. 1130 1171 .. 0.91 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.099 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323217_1 33 LPPGSLSRPR 42 6889999985 PP == domain 2 score: 0.4 bits; conditional E-value: 0.043 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323217_1 45 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 71 567788.999**********99999877 PP == domain 3 score: 35.3 bits; conditional E-value: 5.3e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323217_1 73 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 118 689*******.************************************ PP == domain 4 score: 31.8 bits; conditional E-value: 6.9e-12 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323217_1 124 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 160 9***********.***********************86 PP == domain 5 score: 24.8 bits; conditional E-value: 1e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323217_1 171 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 203 899*****.***********************98 PP == domain 6 score: 23.7 bits; conditional E-value: 2.2e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323217_1 215 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 247 9*******.***********************87 PP == domain 7 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323217_1 243 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 271 9***********5444.....4446888888887 PP == domain 8 score: 33.8 bits; conditional E-value: 1.6e-12 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppag 42 PgpAPas ++Lq ++ l++ glsr s+++p+As+Gpk +p++ T323217_1 285 PGPAPASCQRLQ-AQPLPHGGLSRISSCPPMASPGPKWSPVS 325 9***********.*************************5543 PP == domain 9 score: 34.2 bits; conditional E-value: 1.2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323217_1 358 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 389 589****************************9 PP == domain 10 score: 16.3 bits; conditional E-value: 4.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++glsrps+++ +Gp++ p +gL+ P CL T323217_1 394 TGPALAVEQPLQ-APLLPPRGLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNACL 455 8***********.************************99988887777777777777777776 PP == domain 11 score: -1.6 bits; conditional E-value: 0.18 DUF4705 5 PasrrpLqa.............paslqasgl 22 as+rpL pa l+ +g T323217_1 481 LASHRPLPC*ersa*apclapaPAMLREVGV 511 4677777556666666666666666666655 PP == domain 12 score: -5.4 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL p p + + +++a+p+l ++g T323217_1 531 ASHRPLPR*erla*apcltlaP----------PTLTPCLTPAPPTLTEVG 570 5666665555566633333332..........455555555555555544 PP == domain 13 score: -2.1 bits; conditional E-value: 0.27 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323217_1 624 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 654 4555554477777777777777777766665 PP == domain 14 score: -8.7 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGpk 37 as+rpL p++l + p + + ++ a+p T323217_1 673 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPPM 734 55666655555555555555555555555533333333333332111022233333444444 PP == domain 15 score: 3.6 bits; conditional E-value: 0.0044 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323217_1 876 ARPLQ-THLQPPGVLSGPSS 894 69***.99999999999987 PP == domain 16 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323217_1 935 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 981 555599*******************6666666666666666666666 PP == domain 17 score: -5.0 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323217_1 985 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1030 7888.666666654111222277777886577888865558888888 PP == domain 18 score: -4.6 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323217_1 1035 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1087 67999998888643344444678999999999999999999999999999999 PP == domain 19 score: 0.6 bits; conditional E-value: 0.039 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323217_1 1101 SLTADSPRPASSRLTAASP 1119 5677778888888888875 PP == domain 20 score: 23.5 bits; conditional E-value: 2.7e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323217_1 1131 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1164 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 5689.36 // Query: T323217_2 [L=1232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-58 192.8 257.6 1.9e-17 63.0 8.0 24.8 23 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 2.9 1.2e-07 0.0019 29 48 .. 34 53 .. 25 53 .. 0.95 2 ! 12.6 3.5 6.5e-06 0.11 2 43 .. 61 102 .. 61 110 .. 0.90 3 ! 26.5 6.2 3e-10 4.9e-06 1 36 [. 113 147 .. 113 149 .. 0.94 4 ! 13.9 9.3 2.6e-06 0.042 3 50 .] 147 215 .. 145 215 .. 0.91 5 ! 4.6 7.6 0.0021 34 2 47 .. 189 224 .. 189 231 .. 0.68 6 ! 12.9 2.7 5.5e-06 0.09 3 26 .. 234 256 .. 233 263 .. 0.91 7 ! 19.5 0.7 4.9e-08 0.00079 10 35 .. 283 307 .. 283 308 .. 0.98 8 ! 59.2 8.0 1.9e-20 3e-16 1 50 [] 306 353 .. 306 353 .. 0.99 9 ? -2.0 3.1 0.24 3.9e+03 5 30 .. 354 386 .. 354 393 .. 0.62 10 ? -0.5 15.2 0.083 1.4e+03 5 50 .] 387 444 .. 383 444 .. 0.78 11 ? 0.3 2.3 0.046 7.4e+02 8 23 .. 500 528 .. 495 548 .. 0.60 12 ? -5.0 5.6 1 1.6e+04 13 42 .. 554 608 .. 543 614 .. 0.61 13 ? -2.6 1.7 0.37 6e+03 6 23 .. 640 670 .. 638 693 .. 0.69 14 ? -0.2 0.2 0.067 1.1e+03 6 13 .. 689 696 .. 685 720 .. 0.74 15 ? -2.1 0.2 0.26 4.3e+03 4 12 .. 741 749 .. 741 793 .. 0.74 16 ! 13.7 10.2 3.1e-06 0.05 17 50 .] 873 906 .. 851 906 .. 0.85 17 ! 28.1 3.9 9.6e-11 1.6e-06 16 50 .] 905 939 .. 904 939 .. 0.95 18 ! 63.0 8.0 1.2e-21 1.9e-17 1 50 [] 944 993 .. 944 993 .. 0.99 19 ! 12.9 0.9 5.3e-06 0.087 25 44 .. 989 1008 .. 988 1009 .. 0.91 20 ! 11.5 4.9 1.4e-05 0.24 24 49 .. 1020 1044 .. 1014 1045 .. 0.80 21 ! 4.5 1.7 0.0023 37 26 39 .. 1043 1058 .. 1043 1067 .. 0.72 22 ! 3.2 0.7 0.0059 97 29 50 .] 1069 1091 .. 1069 1091 .. 0.86 23 ! 21.1 14.7 1.5e-08 0.00025 1 39 [. 1096 1156 .. 1096 1163 .. 0.95 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 1.2e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323217_2 34 LPAASPGPELSPVSLHRPSS 53 9*****************98 PP == domain 2 score: 12.6 bits; conditional E-value: 6.5e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323217_2 61 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 102 788********.***********************99765555 PP == domain 3 score: 26.5 bits; conditional E-value: 3e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323217_2 113 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 147 9***********.*******************9755 PP == domain 4 score: 13.9 bits; conditional E-value: 2.6e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323217_2 147 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 215 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323217_2 189 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 224 899********.7777777777777777555433.........333 PP == domain 6 score: 12.9 bits; conditional E-value: 5.5e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323217_2 234 PALASRWPLQ-AQLLSQDVISRPK 256 9*********.******9999995 PP == domain 7 score: 19.5 bits; conditional E-value: 4.9e-08 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaG 35 pLq +++l++++ rp ++L+vAs+G T323217_2 283 PLQ-AQLLPPVSVYRPNLCLTVASPG 307 9**.********************99 PP == domain 8 score: 59.2 bits; conditional E-value: 1.9e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323217_2 306 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 353 9*********************************************..97 PP == domain 9 score: -2.0 bits; conditional E-value: 0.24 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLp 30 Pas++ L a p+ l +s+ +++p T323217_2 354 PASKQALLAqllpssqppl*aPNFLEPSS-----SRPP 386 78888888777766666666666666663.....3333 PP == domain 10 score: -0.5 bits; conditional E-value: 0.083 DUF4705 5 PasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa l+ +++ p + +++As+G+++ pa++ +Pss+L T323217_2 387 TASRWPVQAqlwl*nslcrlRSCLPEASPG-PALAPTAASRGQVPacLPAARVQPSSSL 444 599999998888888888876677777666.6678899999988777679999999997 PP == domain 11 score: 0.3 bits; conditional E-value: 0.046 DUF4705 8 rrpLqa.............paslqasgls 23 +rpL p++l+ +gls T323217_2 500 HRPLPC*ersa*apclapaPPTLREVGLS 528 55554455555555555555555555555 PP == domain 12 score: -5.0 bits; conditional E-value: 1 DUF4705 13 a........................paslqas.glsrpsaqLpvAsaGpklppag 42 p++l + + p + + +++a+p l +++ T323217_2 554 R*plashqplpr*qrsa*apcltlaPPTLTPClTPVPPTLIPCLTPAPPMLTEVS 608 4444444444458888888777787555554313446666777777777776665 PP == domain 13 score: -2.6 bits; conditional E-value: 0.37 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323217_2 640 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 670 8888887777788877777777777777766 PP == domain 14 score: -0.2 bits; conditional E-value: 0.067 DUF4705 6 asrrpLqa 13 as+rpL++ T323217_2 689 ASHRPLHT 696 89999995 PP == domain 15 score: -2.1 bits; conditional E-value: 0.26 DUF4705 4 APasrrpLq 12 A as+rpL T323217_2 741 ALASHRPLP 749 789999994 PP == domain 16 score: 13.7 bits; conditional E-value: 3.1e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323217_2 873 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 906 45568**************************987 PP == domain 17 score: 28.1 bits; conditional E-value: 9.6e-11 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323217_2 905 GLPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 939 5899*****************************87 PP == domain 18 score: 63.0 bits; conditional E-value: 1.2e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323217_2 944 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 993 9***********************************************98 PP == domain 19 score: 12.9 bits; conditional E-value: 5.3e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323217_2 989 SSSSLPAASAGLSCPQVGLE 1008 6899**************96 PP == domain 20 score: 11.5 bits; conditional E-value: 1.4e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323217_2 1020 GPSSV-LLASPGAKLPRVSLSRPSSS 1044 45555.579***************97 PP == domain 21 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323217_2 1043 SSCLPVASFGPAQlmA 1058 79*********86443 PP == domain 22 score: 3.2 bits; conditional E-value: 0.0059 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323217_2 1069 LLVASSGPELdLQSAFAGPASCL 1091 789*******8677888999998 PP == domain 23 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323217_2 1096 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1156 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 5507.10 // Query: T323217_3 [L=1232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-23 82.0 249.0 9.3e-12 44.8 11.0 24.2 22 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 1.0 0.00013 2.1 4 24 .. 31 51 .. 30 59 .. 0.88 2 ? 0.5 1.5 0.042 6.8e+02 1 25 [. 81 104 .. 74 104 .. 0.73 3 ! 10.6 4.5 2.8e-05 0.45 7 36 .. 108 136 .. 106 138 .. 0.92 4 ! 23.9 3.8 2e-09 3.2e-05 1 31 [. 134 163 .. 134 176 .. 0.88 5 ! 17.0 2.8 2.8e-07 0.0046 1 35 [. 177 210 .. 177 219 .. 0.90 6 ! 44.8 11.0 5.7e-16 9.3e-12 1 50 [] 221 269 .. 221 269 .. 0.99 7 ! 23.9 0.8 2e-09 3.3e-05 28 50 .] 268 290 .. 267 290 .. 0.97 8 ! 14.7 0.8 1.5e-06 0.024 1 26 [. 295 319 .. 295 321 .. 0.94 9 ? -5.4 12.0 1 1.6e+04 1 48 [. 328 397 .. 328 406 .. 0.62 10 ! 5.1 14.0 0.0014 23 2 41 .. 405 441 .. 404 451 .. 0.71 11 ? -0.9 0.6 0.11 1.8e+03 5 39 .. 464 512 .. 463 519 .. 0.74 12 ? -1.5 0.1 0.17 2.8e+03 30 44 .. 530 544 .. 528 550 .. 0.81 13 ? -3.7 1.5 0.85 1.4e+04 24 37 .. 617 630 .. 595 638 .. 0.44 14 ? -2.3 0.8 0.29 4.8e+03 6 23 .. 656 686 .. 654 703 .. 0.71 15 ? -0.9 0.1 0.11 1.8e+03 31 46 .. 798 817 .. 776 818 .. 0.79 16 ? 0.0 10.2 0.056 9.1e+02 19 39 .. 885 906 .. 873 918 .. 0.69 17 ! 8.5 3.9 0.00013 2.1 1 25 [. 933 956 .. 933 959 .. 0.94 18 ! 13.5 0.4 3.6e-06 0.059 2 15 .. 967 979 .. 967 986 .. 0.82 19 ! 12.7 20.1 6.2e-06 0.1 1 37 [. 987 1066 .. 987 1068 .. 0.99 20 ! 11.4 2.5 1.6e-05 0.27 1 26 [. 1063 1087 .. 1063 1088 .. 0.93 21 ! 3.8 4.9 0.0036 59 5 26 .. 1089 1109 .. 1086 1109 .. 0.96 22 ! 14.2 4.8 2.1e-06 0.033 16 39 .. 1122 1145 .. 1120 1160 .. 0.87 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323217_3 31 APTSRQPLQAQNFLQSASTDQ 51 9********999999987655 PP == domain 2 score: 0.5 bits; conditional E-value: 0.042 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T323217_3 81 TGTAPPLQWPL*tQ---LLPPSLLSRP 104 68899999988643...6666666665 PP == domain 3 score: 10.6 bits; conditional E-value: 2.8e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323217_3 108 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 136 678999.**********************9 PP == domain 4 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323217_3 134 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 163 9***********.*****************9 PP == domain 5 score: 17.0 bits; conditional E-value: 2.8e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323217_3 177 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 210 57*******9996..7*******************9 PP == domain 6 score: 44.8 bits; conditional E-value: 5.7e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323217_3 221 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 269 8***********.************************************9 PP == domain 7 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323217_3 268 CLLVAYEGPKSPQVDLSRPSSCL 290 9*********************9 PP == domain 8 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 +gp asr+pLq ++l++ g srp T323217_3 295 TGPTSASRWPLQ-DQLLPSDGVSRPQ 319 79**********.9***********7 PP == domain 9 score: -5.4 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslq.......asglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as r pLqa pas+q s++ +++ p ++ + l p +gL rPss T323217_3 328 PRPAWAS-R*PLQAqvvlksaspgPASQQvsklfwlNSCPAPSRLCRPRTFSSQALrarllPLGGLYRPSS 397 7788887.666888888888888877777222222223444444455555666665666667777777776 PP == domain 10 score: 5.1 bits; conditional E-value: 0.0014 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 g+A as+rpLq +++ +++ p+a +As+ p ++p+ T323217_3 405 GSALASQRPLQ-AQLSPPR--RPPGAKSLPASRQPACSPV 441 89*********.6666666..4556666666666666665 PP == domain 11 score: -0.9 bits; conditional E-value: 0.11 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323217_3 464 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 512 7888877668888888888888999999999843777777777776655 PP == domain 12 score: -1.5 bits; conditional E-value: 0.17 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323217_3 530 CLAPAPPTLREVGVS 544 579999999999865 PP == domain 13 score: -3.7 bits; conditional E-value: 0.85 DUF4705 24 rpsaqLpvAsaGpk 37 p + + +++a+p T323217_3 617 PPTLIPCLTPAPPM 630 34444444444444 PP == domain 14 score: -2.3 bits; conditional E-value: 0.29 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323217_3 656 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 686 7888886677777766666666666666554 PP == domain 15 score: -0.9 bits; conditional E-value: 0.11 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323217_3 798 EATVGPADalllPELGLYRP 817 58888876667799999999 PP == domain 16 score: 0.0 bits; conditional E-value: 0.056 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323217_3 885 SRRPLRAQLFLPAASLGPTPaS 906 6777788888888888887752 PP == domain 17 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323217_3 933 PGPGQASRWPRQ-AQLLPSDGISRS 956 9***********.********9985 PP == domain 18 score: 13.5 bits; conditional E-value: 3.6e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323217_3 967 GPAWASRRPLQA-Q 979 9**********4.4 PP == domain 19 score: 12.7 bits; conditional E-value: 6.2e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323217_3 987 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1066 9***************************************************************.***************7 PP == domain 20 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA +++pLq ++ l +s++ +++ T323217_3 1063 PGPAFDFWWPLQ-AQNLTSSRPLQAR 1087 9***********.*******999876 PP == domain 21 score: 3.8 bits; conditional E-value: 0.0036 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp + ++ +++sgls+ps T323217_3 1089 PASRRPAR-AQPQPHSGLSTPS 1109 9*******.************7 PP == domain 22 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpklp 39 +l+ +++rps++LpvAs Gp + T323217_3 1122 LLPFGRFGRPSSCLPVASLGPAHS 1145 578889***************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6293.83 // Query: T370869_1 [L=2371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-29 101.1 0.0 8.8e-29 100.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 2.9e-07 30.7 0.0 5.3e-07 29.8 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.018 14.8 0.0 0.028 14.1 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.4 0.0 1.6e-32 8.8e-29 83 187 .. 226 330 .. 213 338 .. 0.94 Alignments for each domain: == domain 1 score: 100.4 bits; conditional E-value: 1.6e-32 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirk 182 + +p t +wd + + e+l+ y ++l+ gl+ a++ tn+ kv ev+qgkeespa f erl eayr+ytp+dp++pe++ + ++++ qs+ dir+ T370869_1 226 IRIQLPGTDSQWDPNEGPDMEKLRRYSEALIEGLKKGAQKATNVNKVSEVIQGKEESPAQFYERLCEAYRMYTPFDPDSPENQHMINMALVSQSTEDIRR 325 667889999******************************************************************************************* PP Gag_p30 183 klqrl 187 klq+ T370869_1 326 KLQKQ 330 ***85 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.8 0.0 9.7e-11 5.3e-07 5 56 .. 1098 1150 .. 1095 1157 .. 0.87 Alignments for each domain: == domain 1 score: 29.8 bits; conditional E-value: 9.7e-11 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 +Y+DGs++ n +ge++ag+ v+ + a ++pl++ +++++aEL+A++ aL+ T370869_1 1098 ELYVDGSSFINpQGERCAGYaVVTLD-AVIEAKPLPQGTSAQKAELIALTRALE 1150 68*********99999****766766.5677899*******************8 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 5.2e-06 0.028 84 148 .. 234 296 .. 222 318 .. 0.82 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 5.2e-06 Gag_p24 84 gqllaeqsqlmqn....vevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrk 148 sq+ n +e l+ ++++++ +l+k +++++ ++++++ QG++E+ +f +Rl +a r T370869_1 234 D------SQWDPNegpdMEKLRRYSEALIEGLKKGAQKATNVNKVSEVIQGKEESPAQFYERLCEAYRM 296 3......3444443444457899****************************************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 10277.32 // Query: T370869_2 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-22 77.9 0.0 9.4e-22 77.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.3e-15 57.4 0.1 2.2e-15 56.6 0.1 1.3 1 Gag_p30 Gag P30 core shell protein 3.9e-13 49.4 0.0 7.9e-13 48.4 0.0 1.5 1 RVP Retroviral aspartyl protease 0.00043 20.8 0.0 0.00091 19.7 0.0 1.5 1 Asp_protease_2 Aspartyl protease 0.002 18.5 0.0 0.0039 17.6 0.0 1.5 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.0079 16.1 2.6 0.028 14.4 2.6 2.1 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.076 12.6 0.5 0.23 11.1 0.5 1.9 1 zf-C2H2_10 C2H2 zinc-finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.5 0.0 4e-25 9.4e-22 1 222 [] 672 845 .. 672 845 .. 0.94 Alignments for each domain: == domain 1 score: 77.5 bits; conditional E-value: 4e-25 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yR + d++++n+++++ +++ p+ + ++ ++ +++ lD+k+aF+s++ + +++kl+af+ +++ T370869_2 672 VPKPGTKDYRSV----QDLRLVNQATVN---------VHPTVPNPYTLLGL-----------LLPAEDSWFTCLDFKDAFFSIRIAPESQKLFAFQWEDP 747 69*********7....7***********.........88888888888444...........457899******************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinp 200 ++ +++y+++ lpqG+ SP+ f ++ + l+++ + g++ll+Y+D +l+ +++ + + +a+ ++lk++g+k+++ T370869_2 748 -------------------ESGVTTQYTWTQLPQGFQDSPASFGEALARDLQKFPAKDLGCVLLLYVDNLLLGHSTAVGCAKRTDALLQHLKDCGYKVSK 828 ...................34569************************9999999999****************************************** PP GG-EEE.....ESSEEETTEEE CS RVT_1 201 eKtklvlfsgkseevkyLGvtl 222 +K +++ +++v yLG+t+ T370869_2 829 KKAQIC-----RQQVSYLGFTI 845 ******.....9********97 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.6 0.1 9.4e-19 2.2e-15 2 64 .. 144 206 .. 143 210 .. 0.96 Alignments for each domain: == domain 1 score: 56.6 bits; conditional E-value: 9.4e-19 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvlle 64 y pf+++dl +wkt ps++e+pq+l l+++i+ th+p+w d qll l+ t+e++rvl T370869_2 144 YQPFTSADLLKWKTSTPSYTEKPQALIDLLQAIIQTHNPAWADHHQLLMYLFNTDEKRRVLRA 206 89*********************************************************9865 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.4 0.0 3.4e-16 7.9e-13 3 96 .. 462 549 .. 460 553 .. 0.87 Alignments for each domain: == domain 1 score: 48.4 bits; conditional E-value: 3.4e-16 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCC CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqkl 96 ++P +++ ggk i++l+DtGA+++v++ P + k++ + G++g + ++ +++l + ++l +p+ p++llGrdlL+k+ T370869_2 462 KEPTVRITTGGKDIKFLVDTGAEHSVVTTPVAPLS----KKTIDIMGATGVSTKQAFCLLRTCLVGGHEIV--QFLYMPDYPLPLLGRDLLSKM 549 689********************************....9***********96666666666666555555..8*****************998 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 3.9e-07 0.00091 1 81 [. 466 536 .. 466 545 .. 0.75 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 3.9e-07 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispelaeklglkvrksevtvrvsgagge.vkarlvrldslklggltlknvpalvldlgee 81 v++t +Gk+++fl+DTGa ++++++ +a + +k+ t+ ++ga g +k ++ l++ +gg+++ v++l+++ + T370869_2 466 VRITTGGKDIKFLVDTGAEHSVVTTPVA-----PLSKK--TIDIMGATGVsTKQAFCLLRTCLVGGHEI--VQFLYMP--DY 536 578889********************99.....44443..57778888875667777888888888887..7777777..44 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 1.7e-06 0.0039 2 91 .. 467 547 .. 466 548 .. 0.67 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.7e-06 EEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGG-B..--------------EE.EEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHHH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiiseelaerlglsrkddkgkvevktangeveakrv.rldsvkiggielrnvsavvlegelddlLLGldfLk 91 +t gk++kflvDTGA+++++++ +a ls+k + ++ a g+ +++ l++ +gg+e+ v+++ ++ ++ LLG d L+ T370869_2 467 RITTGGKDIKFLVDTGAEHSVVTTPVAP---LSKK----TIDIMGATGVSTKQAFcLLRTCLVGGHEI--VQFLYMP-DYPLPLLGRDLLS 547 57788*******************9994...3333....34566666655443332666777777766..5677664.5566677777665 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 2.6 1.2e-05 0.028 2 18 .] 407 423 .. 406 423 .. 0.94 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.2e-05 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C +C e+GH++ Cp+ T370869_2 407 QCTYCKEIGHWKDKCPQ 423 8***************7 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.5 0.0001 0.23 5 19 .. 407 421 .. 405 423 .. 0.86 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.0001 zf-C2H2_10 5 tCSYChetGHtRAkC 19 +C YC+e+GH kC T370869_2 407 QCTYCKEIGHWKDKC 421 7*********87777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 9826.33 // Query: T370869_3 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.63 # Mc/sec: 10762.17 // Query: T359853_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 11486.67 // Query: T359853_2 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 11144.62 // Query: T359853_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 10673.72 // Query: T210868_1 [L=306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 653 (0.0400466); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 1459.02 // Query: T210868_2 [L=306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 1683.49 // Query: T210868_3 [L=305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 900 (0.0551944); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.54 # Mc/sec: 1615.84 // Query: T318330_1 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 2738.22 // Query: T318330_2 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2690.18 // Query: T318330_3 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 2893.22 // Query: T378564_1 [L=2909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-64 217.6 21.4 3.6e-37 128.0 5.0 3.2 3 Transposase_22 L1 transposable element 2e-10 40.5 0.0 3.6e-10 39.6 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.8 2.6e-09 2.1e-05 11 80 .. 265 345 .. 264 367 .. 0.80 2 ! 128.0 5.0 4.4e-41 3.6e-37 145 249 .. 370 474 .. 370 481 .. 0.98 3 ! 76.4 1.5 2e-25 1.7e-21 240 300 .. 573 633 .. 564 640 .. 0.90 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 2.6e-09 XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX.........X CS Transposase_22 11 kqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee.........n 80 k +nsk +++s+P+++++ Pa ++++++d +el + ++ + ++y elke++ +++ke + k +ee n T378564_1 265 KAQNSKGQSASSPPNDHNIFPAR--AQNWMEDDKNELTEVGFGR*viKNYAELKEDVLTQCKEAKnLDKRLEElltrisldrN 345 789*******************9..99***************98888*****************9788889886555533331 PP == domain 2 score: 128.0 bits; conditional E-value: 4.4e-41 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 i+++eer+ ed++ ei + k rekr+k++eqslq+i+d vkrPnl+liGv + + e+++kl+n+l +ii+enfPn++++ n +iqei+rtP T378564_1 370 INQVEERILEFEDHLAEIRHADKTREKRMKRNEQSLQEIWDSVKRPNLQLIGVLQGDRENGNKLKNTLSDIIQENFPNIARQTNTQIQEIQRTPL 464 689******************************************************************************************** PP SS-TSSSS-- CS Transposase_22 240 rqdskrassr 249 r++ +r+++r T378564_1 465 RYSMRRSTAR 474 ********99 PP == domain 3 score: 76.4 bits; conditional E-value: 2e-25 SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtd 300 +++ ++ h i+r++kv++k+k+l+a+r kG+vt+kGkPirltadl aetlk rr+w++ T378564_1 573 KKKINHKTHNHQILRFSKVKMKEKMLRAARKKGQVTYKGKPIRLTADLLAETLKGRRDWGP 633 4445567899*************************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.6 0.0 4.4e-14 3.6e-10 65 138 .. 1420 1493 .. 1417 1501 .. 0.95 Alignments for each domain: == domain 1 score: 39.6 bits; conditional E-value: 4.4e-14 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TT CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvl 138 k+k++++++ D +kaF+++++++ l+ l++++++ + +++i++++ ++++++ +ng++ e ++ k+ ++qG++l T378564_1 1420 KTKKHMIISTDAEKAFNKIQHPFMLKNLNRLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTSTRQGCPL 1493 67899****************************************************99*************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.80 # Mc/sec: 10402.69 // Query: T378564_2 [L=2909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-15 56.6 0.2 3.4e-15 56.0 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.0 0.2 2.1e-19 3.4e-15 137 222 .] 1491 1602 .. 1490 1602 .. 0.91 Alignments for each domain: == domain 1 score: 56.0 bits; conditional E-value: 2.1e-19 TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.................. CS RVT_1 137 vlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg... 210 +lSPllfn++++ l r +r++ ++v+l+++aDD++++ +++ +q+ll+ + ++ k sg+kin +K++++l+ ++ T378564_2 1491 ALSPLLFNIVLEVLARAIRQKKeikciqigrEEVKLSLFADDMIVYLENPIIsAQKLLKLINNFSKVSGYKINVQKSQAFLYtnnrqaesqimNElpf 1588 69******************99***************************5555***************************999999888877611566 PP ...ESSEEETTEEE CS RVT_1 211 ..kseevkyLGvtl 222 +++++kyLG++l T378564_2 1589 tiTTKRIKYLGIQL 1602 78*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 10807.99 // Query: T378564_3 [L=2909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-22 78.5 0.1 9.3e-22 77.2 0.1 1.6 1 Transposase_22 L1 transposable element 3.9e-10 39.5 0.4 8.9e-10 38.3 0.4 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 6.3e-06 25.9 0.9 1.3e-05 24.9 0.9 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.016 15.3 0.0 0.037 14.2 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.087 12.4 0.7 0.19 11.3 0.7 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.2 0.1 2.8e-25 9.3e-22 299 364 .. 732 799 .. 718 799 .. 0.92 Alignments for each domain: == domain 1 score: 77.2 bits; conditional E-value: 2.8e-25 HHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH.HHHHTT..T-SSXSSXXXX CS Transposase_22 299 tdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal.krllke..knerkdryqal 364 +++++ilkek+fq r++yP kls++++Geik+f dk++lrd+++trPal + llke + erk+ryq+l T378564_3 732 GPIFNILKEKNFQRRISYPDKLSFTSEGEIKYFPDKQMLRDFVTTRPAL*E-LLKEalNLERKNRYQPL 799 79**********************************************888.6677789********98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.4 2.7e-13 8.9e-10 4 67 .. 1356 1421 .. 1350 1425 .. 0.85 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 2.7e-13 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkk 67 k +++Rpis+++++ k+lnk++a+r+++++ekl+++nq+gf pg + + ++ ++++++++ k k T378564_3 1356 K--QNFRPISQMNFNEKILNKILANRIQQHIEKLIHNNQVGFIPGMQGWFNIcksiNVIHHINRTKDK 1421 3..69**********************************************99886666665444444 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.9 4e-09 1.3e-05 2 118 .. 937 1060 .. 936 1061 .. 0.82 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 4e-09 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll.nllkeg.ptf....esen 86 +i ++Y+p++ +l+ +++ l++l+++l+s ++ii+GDfN + + +++++ ++ ++L + l++ +l + +l+ + +++ ++++ T378564_3 937 TILNIYVPKTG-ALRFIKQVLRDLRRDLDS-HTIIVGDFNTPLSILDRSKRQKiNKDIQDLNSALDQVDLIDIyRTLHPKsTEYiffsVPHG 1026 799********.****************98.8**************998888899*************998554333333233311123555 PP Exo_endo_phos_2 87 gssiiDltltsdnlaks..leleeedlgSDHrpi 118 + s i ++ s++l+ + ++ ++++ DH++i T378564_3 1027 TYSKINHIIRSKTLLSKckRTEIITNSLTDHSAI 1060 58**************9886666789*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 1.1e-05 0.037 2 87 .. 839 1015 .. 838 1077 .. 0.73 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.1e-05 EEEESTCHCHHHHHHHHHHHHHHHHHSTT........SEEEEEEEBSCCGHHHHHHHEEEEEEESSSTTSSEEEEEECSEEEEE.......... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkayda........dvlglqEvdddelsrlplladadaskfgtgkgqggvavlsrfpltsl.......... 77 t N n+ ++ + ++ +la+++k++d+ ++++ + ++ r++ + + ++ + +k++ gv++l++ +++ T378564_3 839 TLNANE----LNAPVKRHRLANWIKSQDPwvcciq*tYLMCKDT----HRLRIRGWR--KIYQANGKKKKAGVVILVSDKIDFNttkikkdkeg 922 777777....677788999******9999444444433333322....333333333..56778899999***********44446789***** PP ............................................EEEEEE-SS.......................................- CS ............................................xxxxxxxxx.......................................x RF Exo_endo_phos 78 ............................................vivlGDfNa.......................................r 87 i++GDfN+ T378564_3 923 hyimvkgiiqqaeltilniyvpktgalrfikqvlrdlrrdldshTIIVGDFNTplsildrskrqkinkdiqdlnsaldqvdlidiyrtlhpkS 1015 *****************************************************8887777777777777776666666444444444444441 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.7 5.7e-05 0.19 1 18 [. 2188 2205 .. 2188 2206 .. 0.87 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 5.7e-05 DUF1725 1 kFagKWMELEnIILSEis 18 +Fag+WM+L II S+ + T378564_3 2188 SFAGTWMKLKAIIFSKLT 2205 7********999988777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 572 (0.0350791); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.74 # Mc/sec: 11246.15 // Query: T275906_1 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 14.9 0.0 0.012 14.9 0.0 2.4 2 DUF1510 Protein of unknown function (DUF1510) 0.012 15.4 0.2 0.035 13.9 0.2 1.7 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.018 15.2 6.0 0.11 12.7 6.0 2.4 1 DUF3446 Domain of unknown function (DUF3446) 0.053 13.7 0.3 0.053 13.7 0.3 2.7 2 DUF912 Nucleopolyhedrovirus protein of unknown function 0.06 13.1 4.9 0.11 12.2 4.9 1.3 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 0.061 14.0 0.2 0.061 14.0 0.2 7.8 2 EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.14 11.9 0.0 0.23 11.2 0.0 1.2 1 TMEM154 TMEM154 protein family 8.5 6.0 6.8 16 5.1 6.8 1.3 1 ASFV_J13L African swine fever virus J13L protein Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.6 1.4 2.8e+03 106 106 .. 436 436 .. 341 543 .. 0.63 2 ? 14.9 0.0 5.9e-06 0.012 5 58 .. 610 663 .. 604 668 .. 0.65 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 1.4 DUF1510 106 a 106 + T275906_1 436 H 436 0 PP == domain 2 score: 14.9 bits; conditional E-value: 5.9e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275906_1 610 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 663 334444555566667777777777788888888888887777777766666554 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.2 1.7e-05 0.035 85 139 .. 590 642 .. 566 650 .. 0.52 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.7e-05 LRRC37AB_C 85 inesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275906_1 590 HRHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 642 2333333344444455556666667777777777666666555555554444..4 PP >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 6.0 5.4e-05 0.11 21 60 .. 633 676 .. 624 682 .. 0.50 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 5.4e-05 DUF3446 21 lslvsglvgvanppsspsssssssssssssssspsl......scsv 60 + +v ++ + ++pss+ss+sssss ssss + ++ cs+ T275906_1 633 IIIV-TIIII-SSPSSSSSPSSSSSPSSSSHHHHHHhhplh*VCSL 676 2233.34444.34555555555444444444433335667777766 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 2.4 3.9 7.9e+03 44 44 .. 433 433 .. 347 532 .. 0.70 2 ? 13.7 0.3 2.6e-05 0.053 39 87 .. 593 639 .. 545 655 .. 0.57 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 3.9 DUF912 44 a 44 + T275906_1 433 H 433 0 PP == domain 2 score: 13.7 bits; conditional E-value: 2.6e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275906_1 593 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 639 111222222222222223344444444444444444444433222..11 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 4.9 5.5e-05 0.11 26 59 .. 623 656 .. 615 664 .. 0.69 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.5e-05 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssnan 59 +++ti+++++iii+ ++++ s s+ s sss+++ T275906_1 623 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSSP 656 6789999999998888888765544443333333 PP >> EphA2_TM Ephrin type-A receptor 2 transmembrane domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -87.0 92.4 8 1.6e+04 44 44 .. 461 461 .. 320 620 .. 0.71 2 ? 14.0 0.2 3e-05 0.061 4 49 .. 622 667 .. 619 679 .. 0.57 Alignments for each domain: == domain 1 score: -87.0 bits; conditional E-value: 8 EphA2_TM 44 e 44 + T275906_1 461 H 461 0 PP == domain 2 score: 14.0 bits; conditional E-value: 3e-05 EphA2_TM 4 aaiaglvllvilviivlvlvrrrsknrkqksdlsseekkeeensgk 49 ++i+ +++++i++i++++++++ s++++ +s++s++++ +++++++ T275906_1 622 IIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHHHHHH 667 4555566666666666666656555555555555555555555554 PP >> TMEM154 TMEM154 protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00011 0.23 55 82 .. 616 643 .. 594 667 .. 0.66 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00011 TMEM154 55 qlelvlmiiiPlvllillllvviiliqk 82 + + ++iii + +i++++v ii+i T275906_1 616 HHHHTIIIIITIITIIIIIIVTIIIISS 643 3444677777777777777777777754 PP >> ASFV_J13L African swine fever virus J13L protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 6.8 0.0077 16 29 55 .. 618 644 .. 610 651 .. 0.81 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0077 ASFV_J13L 29 thmytiliaivvliiiiivliylfssr 55 h i+i+i+ +iiiiiv i ++ss T275906_1 618 HHTIIIIITIITIIIIIIVTIIIISSP 644 466677888999999999*99999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1541 (0.0945051); expected 326.1 (0.02) Passed bias filter: 534 (0.0327487); expected 326.1 (0.02) Passed Vit filter: 222 (0.0136146); expected 16.3 (0.001) Passed Fwd filter: 69 (0.00423157); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 2.17u 0.55s 00:00:02.72 Elapsed: 00:00:00.79 # Mc/sec: 3389.54 // Query: T275906_2 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.037 14.2 11.6 0.071 13.3 11.6 1.4 1 DUF3446 Domain of unknown function (DUF3446) 1.4 8.4 12.4 2 7.9 12.4 1.1 1 SR-25 Nuclear RNA-splicing-associated protein 3.1 7.0 17.9 4.5 6.5 17.9 1.1 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 11.6 1.3e-05 0.071 20 69 .. 608 655 .. 599 662 .. 0.50 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.3e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssele 69 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ + T275906_2 608 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHRH 655 233444..233335666666666666666666555554444333333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 12.4 0.00036 2 65 98 .. 621 653 .. 618 660 .. 0.31 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00036 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275906_2 621 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 653 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 17.9 0.00083 4.5 177 204 .. 632 659 .. 615 663 .. 0.52 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00083 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275906_2 632 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 659 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1665 (0.10211); expected 326.1 (0.02) Passed bias filter: 704 (0.0431743); expected 326.1 (0.02) Passed Vit filter: 510 (0.0312768); expected 16.3 (0.001) Passed Fwd filter: 89 (0.00545811); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.80u 0.50s 00:00:03.30 Elapsed: 00:00:00.85 # Mc/sec: 3150.28 // Query: T275906_3 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.9 0.0 1.6 8.9 0.0 2.4 2 DUF912 Nucleopolyhedrovirus protein of unknown function (D Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 4.0 0.96 1.6e+04 38 38 .. 480 480 .. 424 527 .. 0.63 2 ? 8.9 0.0 0.0001 1.6 40 83 .. 615 657 .. 597 661 .. 0.45 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.96 DUF912 38 k 38 + T275906_3 480 S 480 0 PP == domain 2 score: 8.9 bits; conditional E-value: 0.0001 DUF912 40 kksaaeknditekesnaaekaqalnillisllavvcvlvllyvi 83 +s++++++ ++++++ ++++ + li+++ ++++++++ +i T275906_3 615 PSSSYHHHHHHHHHHH-HHHHRHHHHHLITIIIIITIIIIVTII 657 2223333333332332.333444444555555555555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1624 (0.0995952); expected 326.1 (0.02) Passed bias filter: 749 (0.045934); expected 326.1 (0.02) Passed Vit filter: 456 (0.0279652); expected 16.3 (0.001) Passed Fwd filter: 143 (0.00876978); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.86u 0.60s 00:00:04.46 Elapsed: 00:00:01.05 # Mc/sec: 2550.23 // Query: T201372_1 [L=6041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.65 # Mc/sec: 26588.11 // Query: T201372_2 [L=6041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.42s 00:00:01.75 Elapsed: 00:00:00.67 # Mc/sec: 25794.44 // Query: T201372_3 [L=6041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.64 # Mc/sec: 27003.55 // Query: T343480_1 [L=4689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-35 123.0 0.6 1.8e-35 122.3 0.6 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 8e-07 29.2 0.0 1.4e-06 28.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 122.3 0.6 2.3e-39 1.8e-35 1 177 [. 4318 4512 .. 4318 4540 .. 0.93 Alignments for each domain: == domain 1 score: 122.3 bits; conditional E-value: 2.3e-39 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+ +++ ++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T343480_1 4318 IPKPGrdttkKENFRPISLMNIDAKILNKILANGIQQQIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 4415 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHH...HHHHHTT-T............TEEECTTEEEEEESSH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlf...mnellrelrkra......kgvtllrYaDDililsksk 177 ++l++++++ + +++i+++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++ + +++r+ r+ ++v+l+++aDD++++ +++ T343480_1 4416 KTLNKLGIDGTYLKIIRAINDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNRVl*vLARAIRQEREIKgiqlgkEEVKLYLFADDMIVYLENP 4512 ********************************99**********************733369999999986699*******************9984 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.0 1.7e-10 1.4e-06 3 113 .] 3814 4031 .. 3811 4031 .. 0.84 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.7e-10 EEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 3 wNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 Nvng ++ + ++ +la+++k++++ v +qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T343480_1 3814 INVNG----LNVPIKRHRLANWIKSQEPSVCYIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimvkg 3903 46777....8889999*******************998887776666688666778888999999*9999999966677889999999999999 PP .....................................EEEEEE-SS................................................ CS .....................................xxxxxxxxx................................................ RF Exo_endo_phos 78 .....................................vivlGDfNa................................................ 86 i +GDfN+ T343480_1 3904 siqqeeltilniyapntgaprfikqvlsdlqrdldshTITMGDFNTplstldrstrqkvnkdiqelnsaphqadlidiyrtlhpksteytffsa 3997 9999999999999999999999999999999999999999******999999999999999999999999999999999999999999999999 PP ......-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ......xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ......rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T343480_1 3998 phhtcsKIDHILGSKALLSKCKRTEIITNClSDH 4031 99999999******95555444444443337888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 748 (0.0458727); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:00.65 # Mc/sec: 20637.59 // Query: T343480_2 [L=4688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-137 455.7 20.8 1.2e-136 455.3 20.8 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.015 15.3 10.2 0.028 14.5 10.2 1.3 1 ATG16 Autophagy protein 16 (ATG16) 0.022 14.4 9.8 0.043 13.5 9.8 1.4 1 IncA IncA protein 0.28 11.6 5.3 0.59 10.6 5.3 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.49 10.5 9.7 2.4 8.3 9.7 2.2 1 KLRAQ Predicted coiled-coil domain-containing prote 1 9.9 7.2 3.2 8.4 7.2 1.8 1 Occludin_ELL Occludin homology domain 1.2 9.5 5.6 2.7 8.4 5.6 1.5 1 Spectrin Spectrin repeat 1.8 8.7 7.7 3.9 7.6 7.7 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 455.3 20.8 5.8e-140 1.2e-136 1 368 [] 3442 3777 .. 3442 3777 .. 0.98 Alignments for each domain: == domain 1 score: 455.3 bits; conditional E-value: 5.8e-140 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e+++ ++y++l+e+i+++ ke++ ++k+++e ntek+lk T343480_2 3442 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRGSNYSKLQEEIQTERKEVKnFEKNLDEyitritNTEKCLK 3529 79999...9************************..*************************************9*******9999999999998 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqs 179 el+elk+k++el++e++ sl+sr+++leervs +ede++e++re+k+rekr++ ++qs T343480_2 3530 ------------------ELMELKAKARELHEECR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIR-NKQS 3585 ..................9****************..................*********************************97.89** PP HHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHH CS Transposase_22 180 lqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrek 271 lq+i+d+vkrPnlrliGv+es+ e+++klenil++ii+e fPnl+++an++iqei+r P+r++s+ra++rhiivr+tk +k+k+l+++rek T343480_2 3586 LQEIWDYVKRPNLRLIGVPESDGENGTKLENILQDIIQEKFPNLARQANIQIQEIQRMPQRYSSRRATARHIIVRFTK-V*MKEKMLRTAREK 3677 *****************************************************************************9.5559********** PP S-EEETTEEEEEEE---HHHHHHHHHHH.HHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt.dviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 G vt kGkPirl adl aetl+arr + ++++il+ek+fqPr+++Pakls+i++ eik+f dk++lrd+++trPalk+llke ++er+++y T343480_2 3678 GWVTHKGKPIRLMADLLAETLQARRGGGrPIFNILREKNFQPRISHPAKLSFISEEEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNQY 3770 *************************97659*************************************************************** PP XXXXXXX CS Transposase_22 362 qaleqar 368 q+l++++ T343480_2 3771 QPLQNHA 3777 *****96 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 10.2 1.4e-05 0.028 34 153 .. 3453 3570 .. 3414 3573 .. 0.66 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.4e-05 ATG16 34 leaenaklekaaasatssksskaskksakeelasssq...............snskqsakiasleqklaqlreelaelyksrgelaqrllelne...e 113 ++++a+ ++ k ++++ + ++ + ++ ++l++++++ r+e+++ k e +r++++++ e T343480_2 3453 SKKQSAS---------------PPPKERSSS-----PameqswmendfdelrEEGFRGSNYSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKclkE 3530 1111111...............111111112.....12334455666777777777888999999999999999999999999999999999972224 PP ATG16 114 lqkleeklkedeerlaeleaeraaleeklkdreeelreke 153 l +l++k++e e+ ++l++++++lee+++ e+e++e + T343480_2 3531 LMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEMK 3570 5556778899999999999999999999999999998865 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 9.8 2.1e-05 0.043 76 165 .. 3466 3579 .. 3440 3595 .. 0.73 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.1e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++++ e+ l++ +r+ +e++lk+l e + + + ++ +++ sl++++ +l++++ T343480_2 3466 SsspameqswmendfdelreegfrgsnySKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKELMELKAKAR----ELHEECRSLRSRCNQLEERV 3559 23444666677777777888899999999*************************************99999999....77777777777777777777 PP IncA 147 relr.elsdlkeevqelrse 165 + ++ e ++ k+e + +++ T343480_2 3560 SVMEdEMNEMKREGKFREKR 3579 77774444444433333333 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 5.3 0.00029 0.59 5 83 .. 3495 3578 .. 3492 3594 .. 0.72 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00029 Syntaxin-6_N 5 evkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsr 83 + +ee+q k++++ e+ ++++ +++ ++++ ++ el+ +eL++++rs++ ++Lee v+++e + +++k + k ++ T343480_2 3495 KLQEEIQterKEVKNFEKNLDEYiTRITNTEKClKELMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEMKREGKFREK 3578 5666776222567777777777766766666657799*******************************9866555544443333 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 9.7 0.0012 2.4 28 88 .. 3524 3583 .. 3490 3591 .. 0.69 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0012 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqk 88 +++ +el e +++ r ++E sL r +qLe rv+++ +e++e +++ +k ++k +k T343480_2 3524 TEKCLKELMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIRNK 3583 334444555666778999**************************98765.66654433333 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 7.2 0.0016 3.2 24 95 .. 3493 3565 .. 3490 3588 .. 0.61 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0016 Occludin_ELL 24 YkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKkl 95 Y++l++e+++ +k+++++e++l+e+ ++ ++++k +e l e+k + + ++e ++ + rc++L+e+ s++ T343480_2 3493 YSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKE-LMELKAKARelHEECRSLRSRCNQLEERVSVMEDE 3565 66666666666666666666666666666666666666.44444444435666666666666666666555443 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 5.6 0.0013 2.7 36 102 .. 3500 3565 .. 3471 3596 .. 0.59 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0013 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Spectrin 36 vqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqk 102 +q+ k+ k +e++l+++ +r+++ ++ ++l++ + ++ e++e + l++r +L+e++ ++++ T343480_2 3500 IQTERKEVKNFEKNLDEYITRITNTEKCLKELMEL-KAKARELHEECRSLRSRCNQLEERVSVMEDE 3565 44444466666666666666666666666666555.3555566666666666666666655544443 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 7.7 0.0019 3.9 6 100 .. 3475 3569 .. 3472 3572 .. 0.90 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0019 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e + +++++ +e+ ++ ++ ++ l+e ++ + k +++++ k++a el +e ++l + ++le++++ +e+e++++ T343480_2 3475 WMENDFDELREEGFRGSNYSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKELMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEM 3569 67788999998886444888889999999999***********************************************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 765 (0.0469152); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.47u 0.44s 00:00:01.91 Elapsed: 00:00:00.70 # Mc/sec: 19159.39 // Query: T343480_3 [L=4688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.9 0.1 0.018 14.4 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 1.1e-06 0.018 180 222 .] 4515 4573 .. 4506 4573 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.1e-06 HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 180 lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +q+ll+ ++++ k sg+kin +K++++l s+ s+++kyLG++l T343480_3 4515 AQNLLKLISNFSKVSGYKINVQKSQAFLNtnnrqtesqimSElpftiASKRIKYLGIQL 4573 899************************88999888877661156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.61 # Mc/sec: 21986.18 // Query: T211306_1 [L=2942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.59 # Mc/sec: 14265.36 // Query: T211306_2 [L=2942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 13575.10 // Query: T211306_3 [L=2942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 14511.31 // Query: T104950_1 [L=1420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 7386.14 // Query: T104950_2 [L=1420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 7386.14 // Query: T104950_3 [L=1420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7004.10 // Query: T183157_1 [L=4936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.37s 00:00:01.58 Elapsed: 00:00:00.64 # Mc/sec: 22064.15 // Query: T183157_2 [L=4935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.63 # Mc/sec: 22409.83 // Query: T183157_3 [L=4935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.65 # Mc/sec: 21720.30 // Query: T369320_1 [L=1236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 6429.07 // Query: T369320_2 [L=1236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 5703.20 // Query: T369320_3 [L=1236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.65 # Mc/sec: 5439.98 // Query: T004819_1 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-19 68.7 0.0 9.9e-19 67.8 0.0 1.4 1 RNase_H RNase H 8.6e-15 54.7 0.0 1.4e-14 54.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 8.8e-11 41.8 0.0 1.8e-10 40.8 0.0 1.5 1 RVP Retroviral aspartyl protease 2.1e-10 40.7 0.0 3.6e-10 40.0 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.8 0.0 2.4e-22 9.9e-19 5 138 .. 1507 1644 .. 1504 1644 .. 0.86 Alignments for each domain: == domain 1 score: 67.8 bits; conditional E-value: 2.4e-22 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.HHTTSSSETTSSBH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.kknawkttseqkpv 98 +Y D s++ n +ge++ag+ v+ + a + +++l++ +++++ L+A+i aL+ + ++++vniytDS+Y++ +++ vh++ k++ + +s +k++ T004819_1 1507 ELYMDRSSFVNpQGERCAGYaVVTLD-AVTEAKSLPQDTSAQKVKLIALIWALElS--EGKTVNIYTDSRYAFLTLQ--VHGAlYKEKGPLKSGGKDI 1599 68*********89999****766766.668999999******************55..9**************9554..56653455666899999** PP TT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlA 138 k +e+ +l++++ k++kv ++h++gH+ + gN +aD+ A T004819_1 1600 KYqQEILQLVEAVWKPQKVAVMHCRGHQRAstsiALGNSQADSEA 1644 *889***********************655567778******865 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.0 0.0 3.4e-18 1.4e-14 102 174 .. 717 789 .. 706 802 .. 0.89 Alignments for each domain: == domain 1 score: 54.0 bits; conditional E-value: 3.4e-18 Gag_p30 102 reslklyrqlllaglrgaarrptnlakvkevvq.gkeespaaflerlkeayrrytpydpedpeqkasvalsfia 174 ++l+ yr++ll gl+ a++ tn+ kv ev gk+espa f erl eay +ytp+dp++pe+++ +++++++ T004819_1 717 MQRLNRYREALLEGLKKGAQKATNVNKVSEV-I*GKDESPAQFYERLCEAYPMYTPFDPDSPENQCMITMALVK 789 567899**********************996.7779**********************************9986 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.8 0.0 4.5e-14 1.8e-10 13 100 .. 942 1024 .. 934 1025 .. 0.92 Alignments for each domain: == domain 1 score: 40.8 bits; conditional E-value: 4.5e-14 TEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 13 gkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 g+ ie+l+ tGA+++v++ P + k++ + G++g ++++ ++ ++ ++++ ++l + ++p++llGrdlL+kl++++ T004819_1 942 GQNIEFLVNTGAEHSVVTTPVAPLS----KKTIDIIGATGVLaKQAFCLPQTCTIGGHEVTY--QFLYMLDCPLPLLGRDLLSKLKATI 1024 5789*********************....9999999**999978889999999999999999..9999999***************998 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.0 0.0 8.8e-14 3.6e-10 3 85 .. 1772 1850 .. 1770 1888 .. 0.86 Alignments for each domain: == domain 1 score: 40.0 bits; conditional E-value: 8.8e-14 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafre 85 +p e +qvD+t+++ + gg+ yllv + ++sr++ a+++++ +a +v+++l r + +g p+r+ sDng ++++ +r+ T004819_1 1772 APFEDLQVDFTKMS--KCGGNRYLLVLVCTYSRWVEAYPTRTG-KACEVTCVLLRDLNPTFGL-PLRISSDNGLVFVASWYRR 1850 689999********..99999**********************.*******************.************9985553 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.68 # Mc/sec: 9651.09 // Query: T004819_2 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-21 75.6 0.0 4.8e-21 75.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.2 0.0 2.9e-25 4.8e-21 1 222 [] 1086 1258 .. 1086 1258 .. 0.95 Alignments for each domain: == domain 1 score: 75.2 bits; conditional E-value: 2.9e-25 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkv 97 +pK+g+++yR+i d+ ++n++++ l++ p+ + l+ + + +++ l lk+aF+s++l+ +++kl+af+ T004819_2 1086 VPKPGTKDYRLI----QDLHLVNQATVT---------LHPTVPNPYTL-------------LWLLPAEdSWFTYLGLKDAFFSIRLAPESQKLFAFQW 1157 69*********9....8***********.........99999999999.............55555555***************************** PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 +++ g+ +++y+++ lpqG+++S ++f ++ + l+++ +r g++ll+Y+DD+l+ + + + ++++ +l+++g T004819_2 1158 EDP-------------------GSGVTTQYTWTQLPQGFKNSTTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCG 1236 *98...................7788************************************************************************ PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ ++ev+yLG+t+ T004819_2 1237 YKVSKKKAQIC-----QQEVRYLGFTI 1258 ***********.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 9651.09 // Query: T004819_3 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-19 67.7 1.7 4.8e-16 58.8 0.8 2.1 2 Gag_p30 Gag P30 core shell protein 7.9e-13 48.1 0.2 1.9e-12 46.8 0.0 1.7 2 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.8 0.8 5.9e-20 4.8e-16 2 96 .. 616 711 .. 615 719 .. 0.90 2 ! 7.6 0.0 0.00028 2.3 174 210 .. 787 823 .. 783 824 .. 0.93 Alignments for each domain: == domain 1 score: 58.8 bits; conditional E-value: 5.9e-20 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne.vdeafpltrpdwdy 96 y f+ +dl n k+n ps++ +pq++ l+++i+ th+ptw dc q+l l+ t+er+rvl a k ++ + q p+e v +p t p+wd T004819_3 616 YQLFTPTDLLNRKNNTPSYTGKPQAIIDLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEyVRIQLPGTDPQWDP 711 667999************************************************************99877666666655448899********95 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00028 Gag_p30 174 aqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 q++ dir+klq+ g+ ++++++l+ a++v+ r+ T004819_3 787 SQTTEDIRRKLQKQAGFVGMNMSQLLEIANQVFVNRD 823 6999*****************************9886 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.8 0.0 2.3e-16 1.9e-12 31 105 .. 425 496 .. 413 520 .. 0.82 2 ? -3.5 0.1 0.85 6.9e+03 37 51 .. 1227 1241 .. 1223 1242 .. 0.86 Alignments for each domain: == domain 1 score: 46.8 bits; conditional E-value: 2.3e-16 HHHHHHHHHTT.GGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXXXXXX CS Gag_MA 31 kkklitlCsse.WptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflpskpl 105 +kl+tlC+ + +l+vgWP+eG+ d ++++kv +kv + G+ Dq pYi tW +Lv dPP vk +s+++ T004819_3 425 LGKLRTLCEID*A-ALEVGWPTEGSLDRSLVSKVWHKVTGK---GYLDQFPYIDTWLQLVLDPPTVVKRIGSSNTS 496 5677777765333.79**********************966...***********************998777665 PP == domain 2 score: -3.5 bits; conditional E-value: 0.85 HHHTTGGGGSSS--T CS Gag_MA 37 lCsseWptlnvgWPr 51 Cs W t+++++Pr T004819_3 1227 PCSGTWRTVGIRYPR 1241 5999*********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.70 # Mc/sec: 9375.35 // Query: T279834_1 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 4535.80 // Query: T279834_2 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 4256.57 // Query: T279834_3 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 4605.47 // Query: T229240_1 [L=1617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 7228.07 // Query: T229240_2 [L=1617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 7228.07 // Query: T229240_3 [L=1616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 6900.15 // Query: T354629_1 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.55 # Mc/sec: 6860.79 // Query: T354629_2 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 5805.28 // Query: T354629_3 [L=1318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 5985.04 // Query: T125965_1 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 4963.11 // Query: T125965_2 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5199.44 // Query: T125965_3 [L=1144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4958.77 // Query: T250066_1 [L=1718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 7561.39 // Query: T250066_2 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-06 26.9 0.3 5.2e-06 25.8 0.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 0.3 3.2e-10 5.2e-06 2 19 .] 1557 1574 .. 1557 1574 .. 0.98 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 3.2e-10 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa++W ELE+IILSE +Q T250066_2 1557 FAATWVELETIILSEATQ 1574 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 490 (0.0300503); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.66 # Mc/sec: 7442.49 // Query: T250066_3 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 6728.83 // Query: T183037_1 [L=6869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.03u 0.40s 00:00:02.42 Elapsed: 00:00:00.88 # Mc/sec: 22330.73 // Query: T183037_2 [L=6869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.36s 00:00:02.46 Elapsed: 00:00:00.88 # Mc/sec: 22330.73 // Query: T183037_3 [L=6868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.41s 00:00:02.36 Elapsed: 00:00:00.76 # Mc/sec: 25852.87 // Query: T018782_1 [L=8451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-59 201.0 37.8 1.7e-35 122.5 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 2.3e-12 46.8 0.1 2.3e-12 46.8 0.1 2.7 3 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 5.6e-07 29.8 9.0 5.6e-07 29.8 9.0 3.9 4 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 1.8 8.5 13.2 0.029 14.3 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.7 15.7 3e-31 1.2e-27 3 96 .. 1907 2000 .. 1907 2001 .. 0.98 2 ! 122.5 14.1 4.3e-39 1.7e-35 184 304 .. 2085 2196 .. 2074 2197 .. 0.96 3 ? -6.7 12.5 4 1.6e+04 130 203 .. 2253 2329 .. 2225 2343 .. 0.47 Alignments for each domain: == domain 1 score: 96.7 bits; conditional E-value: 3e-31 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018782_1 1907 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 2000 599*****************************************************************************************95 PP == domain 2 score: 122.5 bits; conditional E-value: 4.3e-39 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018782_1 2085 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2173 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018782_1 2174 KLMNECDHLKESLFQYEREKAER 2196 **********************9 PP == domain 3 score: -6.7 bits; conditional E-value: 4 CCDC144C 130 rlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyq 203 ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ T018782_1 2253 AEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAM 2329 44444444444444444444444322223444444444444444443333333444444444444444444444333 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 1.0 0.22 9e+02 29 65 .. 2273 2309 .. 2237 2322 .. 0.76 2 ? -0.8 0.0 0.19 7.8e+02 39 55 .. 3814 3830 .. 3812 3837 .. 0.86 3 ! 46.8 0.1 5.6e-16 2.3e-12 102 175 .. 3863 3936 .. 3855 3945 .. 0.92 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.22 BAR_3_WASP_bdg 29 eaeelDlqeveqkveafkkftkkmdesvkellevine 65 ++e l +++v+q +e++++ k ++e++ +l++ +++ T018782_1 2273 QQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMEN 2309 3355678899999999999999999999999887764 PP == domain 2 score: -0.8 bits; conditional E-value: 0.19 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 +k++ fk ftkkmd+ T018782_1 3814 KSKIDGFKCFTKKMDNR 3830 579************96 PP == domain 3 score: 46.8 bits; conditional E-value: 5.6e-16 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++ + ++e+fa q++kDl++ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018782_1 3863 ELDQAIHFSIDASHSVSELFASQSRKDLDPAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 3936 789999999***********************************************************987654 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.0 5.9 4 1.6e+04 29 94 .. 1926 1990 .. 1911 1996 .. 0.78 2 ? 0.0 0.6 0.24 9.9e+02 44 108 .. 2172 2240 .. 2159 2241 .. 0.75 3 ? -4.2 10.5 4 1.6e+04 8 65 .. 2269 2324 .. 2265 2337 .. 0.77 4 ! 29.8 9.0 1.4e-10 5.6e-07 4 107 .. 2289 2394 .. 2287 2396 .. 0.78 Alignments for each domain: == domain 1 score: -6.0 bits; conditional E-value: 4 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018782_1 1926 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 1990 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 0.0 bits; conditional E-value: 0.24 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018782_1 2172 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2240 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -4.2 bits; conditional E-value: 4 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018782_1 2269 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2324 666789***********9..89******999984466666655.445566777777776 PP == domain 4 score: 29.8 bits; conditional E-value: 1.4e-10 DUF3496 4 mElrikdLeselskmKtsqedsnkteLekykqlyleelkvrks.LsnklnktnerLa....evstkllvekeqnrsllstlttrpvlesPcvgnlnns 96 +E k Le e+ +Kt e+s eL k + y el r + +kl++ + +++ + + +l++ekeq +++lstl+tr esPcv+nl+ s T018782_1 2289 LEEDKKMLEEEILNLKTHMENS-MVELSKLQ-EYKSELDERAMqAVEKLEEIHLQIE*ensNDQYQLFMEKEQVKYFLSTLPTRRGRESPCVENLT-S 2383 5667799999999999988777.99998874.57777766655134566666666645322345689*****************************.* PP DUF3496 97 lvlnrklipre 107 ++lnrk+ip++ T018782_1 2384 IGLNRKYIPQM 2394 *********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 1.1 7.1e-06 0.029 24 94 .. 2087 2156 .. 2083 2157 .. 0.95 2 ? -1.8 5.1 0.63 2.6e+03 13 79 .. 2274 2339 .. 2241 2343 .. 0.80 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 7.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018782_1 2087 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2156 68999********************************************************76.9999986 PP == domain 2 score: -1.8 bits; conditional E-value: 0.63 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018782_1 2274 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2339 3333.45678999999999999999999999999999999999999999999999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 781 (0.0478965); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 3.00u 0.41s 00:00:03.41 Elapsed: 00:00:00.81 # Mc/sec: 29847.99 // Query: T018782_2 [L=8451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-16 60.3 9.6 2.7e-16 59.4 9.6 1.3 1 CCDC144C CCDC144C protein coiled-coil region 3.4e-16 59.3 0.9 2e-08 33.9 0.3 2.3 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.4 9.6 3.4e-20 2.7e-16 96 185 .. 1999 2086 .. 1986 2088 .. 0.93 Alignments for each domain: == domain 1 score: 59.4 bits; conditional E-value: 3.4e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018782_2 1999 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2086 689**********************9554.57..89*****************************************************99 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 3.3e-09 2.7e-05 2 29 .. 3776 3803 .. 3775 3805 .. 0.91 2 ! 33.9 0.3 2.4e-12 2e-08 185 228 .. 3945 3988 .. 3930 3994 .. 0.93 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 3.3e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018782_2 3776 EIAWRQGKRKAEKDEMVSARFFLALSPP 3803 679**********************975 PP == domain 2 score: 33.9 bits; conditional E-value: 2.4e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018782_2 3945 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 3988 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.48u 0.42s 00:00:02.90 Elapsed: 00:00:00.82 # Mc/sec: 29483.99 // Query: T018782_3 [L=8451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.42s 00:00:03.11 Elapsed: 00:00:00.94 # Mc/sec: 25720.08 // Query: T215514_1 [L=790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 4035.81 // Query: T215514_2 [L=790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3645.25 // Query: T215514_3 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.54 # Mc/sec: 4179.99 // Query: T166955_1 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.63 # Mc/sec: 10739.47 // Query: T166955_2 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 9665.52 // Query: T166955_3 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.77 # Mc/sec: 8786.83 // Query: T235997_1 [L=2035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 8199.70 // Query: T235997_2 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 8557.25 // Query: T235997_3 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.8 8.1 7.7 0.35 10.9 0.5 3.3 2 zf-AN1 AN1-like Zinc finger Domain annotation for each model (and alignments): >> zf-AN1 AN1-like Zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 1.7 0.32 5.2e+03 12 21 .. 108 117 .. 103 132 .. 0.66 2 ? 10.9 0.5 2.1e-05 0.35 9 30 .. 1107 1126 .. 1102 1128 .. 0.83 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.32 zf-AN1 12 lpfkCryCgk 21 l+ kC++C++ T235997_3 108 LILKCPTCDQ 117 5677877765 PP == domain 2 score: 10.9 bits; conditional E-value: 2.1e-05 zf-AN1 9 kdflpfkCryCgkvFClkHrlp 30 ++ f C++C vFC H +p T235997_3 1107 RL--FFICPKCLDVFCPLHFTP 1126 34..4**************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.85 # Mc/sec: 6845.80 // Query: T138164_1 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 6046.75 // Query: T138164_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.61 # Mc/sec: 6542.39 // Query: T138164_3 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 17.7 0.0 0.0013 17.7 0.0 1.1 1 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 8e-08 0.0013 120 173 .. 14 157 .. 1 888 [. 0.75 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 8e-08 PHO4 120 lswvlsPllggllaallfllvrrlil...............lkaalkllpllvlltvainaflilyk..............l.................. 172 + +v+ ++ +++ ++++++v+ +++ + + + ++ ++v+++++++++ ++++ l T138164_3 14 MVMVMVTMVMVVAMVTMVIVVMVVVVvmvvmvmmvmmvvivMAMVMVTMVVMVMVVAMVMTMTMMMQllsv**alaacqvlLqtcsqsaqticctgnvsp 113 2222222221111111111111111111111000000111122222333333333333333333333444444444444430334444444444444444 PP PHO4 173 ...........................................e 173 + T138164_3 114 flwmrliglkgqaqghrvanr*haavaglslsvqpqqerswegQ 157 44444444444444444555555555555555555444444440 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1513 (0.0927879); expected 326.1 (0.02) Passed bias filter: 295 (0.0180915); expected 326.1 (0.02) Passed Vit filter: 141 (0.00864712); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.45s 00:00:01.86 Elapsed: 00:00:00.74 # Mc/sec: 5389.19 // Query: T376716_1 [L=979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 4308.85 // Query: T376716_2 [L=978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-13 50.7 0.0 3e-13 49.7 0.0 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.7 0.0 1.8e-17 3e-13 92 188 .. 322 427 .. 315 435 .. 0.89 Alignments for each domain: == domain 1 score: 49.7 bits; conditional E-value: 1.8e-17 GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqe 182 ++++++ + +++i++++ ++++ + +ng++ e ++ k ++q ++lSPllfn++++ l r +r++ ++v+l+++aDD++i+ +++ l + T376716_2 322 SQKLGINGMYLKIIRAIYDKPTAKIILNGQKLEAFPLKSSTRQRCPLSPLLFNIVLEVLARAVRQEKeikgiqigiEEVKLSLFADDMIIYLENPIILAQ 421 5678899999********************99*********************************99***************************888555 PP HHHHHH CS RVT_1 183 lleave 188 l ++ T376716_2 422 NLVKLM 427 554444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 561 (0.0344045); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 4512.73 // Query: T376716_3 [L=978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-17 63.3 1.1 3.4e-17 62.6 1.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 2.9e-08 33.0 0.1 5.6e-08 32.1 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.6 1.1 4.1e-21 3.4e-17 1 93 [. 222 323 .. 222 324 .. 0.95 Alignments for each domain: == domain 1 score: 62.6 bits; conditional E-value: 4.1e-21 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl++ d k+lnk++a++++ +++kl++++q+gf pg + + ++ +++++ ++ + k+++++++D +kaF++++ ++ l++ T376716_3 222 IPKPGrdttkKENFRPISLMKLDAKILNKILANQIQHHIKKLIQHDQVGFIPGMQGWFNIhksvNVIHQVNRTNDKNHTIISIDAEKAFNKIQQPFMLKT 321 899999999999**********************************************99*9988888888889999*******************9999 PP GG CS RVT_1 92 lt 93 l+ T376716_3 322 LK 323 86 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.1 0.1 6.9e-12 5.6e-08 1 19 [] 949 967 .. 949 967 .. 0.98 Alignments for each domain: == domain 1 score: 32.1 bits; conditional E-value: 6.9e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IIL++ +Q T376716_3 949 SFAGTWMKLETIILRKLTQ 967 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 4663.15 // Query: T051395_1 [L=5647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.39s 00:00:01.94 Elapsed: 00:00:00.71 # Mc/sec: 22753.67 // Query: T051395_2 [L=5647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.44s 00:00:02.18 Elapsed: 00:00:00.89 # Mc/sec: 18151.81 // Query: T051395_3 [L=5647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.41s 00:00:02.06 Elapsed: 00:00:00.76 # Mc/sec: 21256.72 // Query: T083139_1 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.3 0.2 0.0012 18.3 0.2 1.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.9 0.64 1e+04 5 8 .. 523 526 .. 523 526 .. 0.91 2 ! 18.3 0.2 7.5e-08 0.0012 2 18 .. 1524 1540 .. 1524 1540 .. 0.96 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 0.64 DUF1725 5 KWME 8 KWM+ T083139_1 523 KWMD 526 9**7 PP == domain 2 score: 18.3 bits; conditional E-value: 7.5e-08 DUF1725 2 FagKWMELEnIILSEis 18 Fag+WME E IILS+ + T083139_1 1524 FAGTWMEPEVIILSKLT 1540 9*************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.73 # Mc/sec: 6901.26 // Query: T083139_2 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-06 26.5 0.0 8.2e-06 25.4 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.022 14.8 0.0 0.048 13.8 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 0.0 1e-09 8.2e-06 122 158 .. 735 771 .. 727 783 .. 0.87 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 1e-09 ..TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmnellrelrkra 158 + e ++ k+g+ qG++lSPllfn++++ l re+r++ T083139_2 735 KLEAFPLKTGTTQGCPLSPLLFNIVLEVLAREIRQEK 771 558899****************************964 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 5.9e-06 0.048 2 75 .. 99 170 .. 99 280 .. 0.89 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5.9e-06 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfplt 75 t Nvng ++ + ++ ++a++++++ + v+ lqE++ ++ +l+ + ++ + ++++ gva+l++ +++ T083139_2 99 TLNVNG----LNAPIKRHRMASWIQRQVPSVFSLQETHLTCKDTHRLKIkgWRKIYQANGKQNNAGVAILVSDKID 170 789***....7778899*******************9999887777766886667778888999******999884 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 626 (0.0383908); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 7408.71 // Query: T083139_3 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00039 20.1 0.7 0.00084 19.1 0.7 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.7 5.2e-08 0.00084 2 114 .. 196 315 .. 195 320 .. 0.74 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 5.2e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkegptf..esengs 88 ++ ++Y+p+++ + ++ ++l++ + ++ii+GDfN + + + + ++ ++ + L + l++ +l + n ++++ tf +++++ T083139_3 196 TVLNIYVPNTE--APRFIKQVVRHLQRYLDCHTIIVGDFNIPLTTLDRSLIQKiTKDIQVLNSALDQMDLMDIyrtlNPKTTEYTFflSPHSAY 287 7899***9988..66666666666666665599**************98777788899999999999888644455476666655522344449 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSD 114 s iD ++ s++l+ + +++ ++ SD T083139_3 288 SKIDHIIRSKTLLSKckRTESITNNFSD 315 *************997655556666676 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1380 (0.0846314); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.74 # Mc/sec: 6808.00 // Query: T221979_1 [L=3262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.80 # Mc/sec: 11665.03 // Query: T221979_2 [L=3262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 13723.57 // Query: T221979_3 [L=3261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.68 # Mc/sec: 13719.36 // Query: T052065_1 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 5580.96 // Query: T052065_2 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 5869.63 // Query: T052065_3 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 5765.30 // Query: T106795_1 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.52 # Mc/sec: 1496.43 // Query: T106795_2 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 1235.15 // Query: T106795_3 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.084 13.4 3.6 0.19 12.3 0.1 2.3 2 LEA_1 Late embryogenesis abundant (LEA) group 1 Domain annotation for each model (and alignments): >> LEA_1 Late embryogenesis abundant (LEA) group 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 1.2e-05 0.19 4 44 .. 25 64 .. 23 68 .. 0.82 2 ? 1.7 0.5 0.024 3.9e+02 44 67 .. 94 117 .. 74 120 .. 0.79 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.2e-05 LEA_1 4 aKekakdvaasakakmektkAkvqEKaekatArdpaekelA 44 a+e ++ v+ s+ a+ +A +EKa ka Ar+pa+++ A T106795_3 25 AQEPTERVGGSRMAGCR-SRALPHEKAAKAPARNPAQRRWA 64 55666667777778887.89999***************998 PP == domain 2 score: 1.7 bits; conditional E-value: 0.024 LEA_1 44 AeerkkareaeAemelhqakaeha 67 A ++ar+a+A el+ a++++a T106795_3 94 AAPSARARQADAHPELQLARKRRA 117 555678999999999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.52 # Mc/sec: 1496.43 // Query: T317233_1 [L=1980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 9285.97 // Query: T317233_2 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 8450.12 // Query: T317233_3 [L=1979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 8325.86 // Query: T221584_1 [L=2172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 10713.32 // Query: T221584_2 [L=2172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 10022.13 // Query: T221584_3 [L=2172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.85 # Mc/sec: 7310.26 // Query: T144140_1 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.68 # Mc/sec: 20080.50 // Query: T144140_2 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.39s 00:00:01.85 Elapsed: 00:00:00.76 # Mc/sec: 17966.77 // Query: T144140_3 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.43s 00:00:02.09 Elapsed: 00:00:00.82 # Mc/sec: 16652.12 // Query: T099907_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 6588.20 // Query: T099907_2 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 5977.63 // Query: T099907_3 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 6584.06 // Query: T369912_1 [L=3937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.87 # Mc/sec: 12946.08 // Query: T369912_2 [L=3936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 564 (0.0345885); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.74 # Mc/sec: 15216.52 // Query: T369912_3 [L=3936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.62 # Mc/sec: 18161.66 // Query: T353475_1 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1484 (0.0910094); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 4245.27 // Query: T353475_2 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.065 14.0 0.1 0.065 14.0 0.1 2.4 2 TT_ORF2 TT viral ORF2 Domain annotation for each model (and alignments): >> TT_ORF2 TT viral ORF2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.1 4e-06 0.065 30 110 .. 109 188 .. 103 190 .. 0.69 2 ? -9.1 8.5 1 1.6e+04 83 92 .. 288 297 .. 270 309 .. 0.47 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 4e-06 TT_ORF2 30 gdplkHlidlatqlsleepqgkrpkr...klilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaededldegd 110 d l+ l++la++l +pq +++ + +++l p lp++ +++ k l + g+d++ g +++gdg +gd++d+d d+gd T353475_2 109 LDLLAMLFNLANVLPHRQPQWPGASPswtTSALDTPPYLPLHHATS----KALVQVGTDGKLGSDDGGDGGGGDDDDNDNDDGD 188 5667778888888887775555444400155556666666666666....3444567899999999**********99999987 PP == domain 2 score: -9.1 bits; conditional E-value: 1 TT_ORF2 83 gedaetgpse 92 g d+++g ++ T353475_2 288 GGDGNDGIDG 297 2333332222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1737 (0.106525); expected 326.1 (0.02) Passed bias filter: 423 (0.0259414); expected 326.1 (0.02) Passed Vit filter: 196 (0.0120201); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.63 # Mc/sec: 3769.03 // Query: T353475_3 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1458 (0.0894149); expected 326.1 (0.02) Passed bias filter: 275 (0.016865); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 4240.16 // Query: T063477_1 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 1525.78 // Query: T063477_2 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 1496.43 // Query: T063477_3 [L=271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1582.21 // Query: T080890_1 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-120 398.5 2.9 3.4e-120 397.8 2.9 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.5e-52 175.4 9.7 2.8e-52 174.6 9.7 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 5.1e-25 88.4 5.1 5.8e-25 88.2 3.9 1.7 2 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 397.8 2.9 6.2e-124 3.4e-120 1 169 [] 199 367 .. 199 367 .. 1.00 Alignments for each domain: == domain 1 score: 397.8 bits; conditional E-value: 6.2e-124 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqd 97 avtwmdnpievyvndsvwv+gpiddrcpakpeeegmminisigy+yppiclgrapgclmpavqnwlvevptvspisrfty+mvsgmslrprvnylqd T080890_1 199 AVTWMDNPIEVYVNDSVWVHGPIDDRCPAKPEEEGMMINISIGYHYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYNMVSGMSLRPRVNYLQD 295 79*********************************************************************************************** PP HERV-K_env_2 98 fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqscp 169 fsyqrslkfrpkgkpcpkeipkeskntevlvweecvans+vilqnnefgtiidwaprgqfyhncsgqtqscp T080890_1 296 FSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSVVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP 367 ***********************************************************************9 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 174.6 9.7 5.1e-56 2.8e-52 1 87 [] 104 189 .. 104 189 .. 0.99 Alignments for each domain: == domain 1 score: 174.6 bits; conditional E-value: 5.1e-56 HERV-K_REC 1 nraplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 nraplthkmnkmvts eqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvv+l+m+a+++aa+++++a T080890_1 104 NRAPLTHKMNKMVTS-EQMKLPSTKKAEPPTWAQLKKLTQLATKYLENTKVTQTPESMLLAALMIVSMVVSLPMPAGAAAANYTNWA 189 9*************9.59********************************************************************7 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.51 2.8e+03 122 163 .. 132 174 .. 119 176 .. 0.68 2 ! 88.2 3.9 1.1e-28 5.8e-25 1 200 [. 570 766 .. 570 767 .. 0.84 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.51 HHHHHHTCHHHHH.HHHHHGCHHH.HHHHHHHHHHHHHHHCHH CS GP41 122 ktlqeldkldklaqslannfksln.Wvsyikltvliiavgval 163 t +l+kl +la + +n k+++ s +++i+ ++v+l T080890_1 132 PTWAQLKKLTQLATKYLENTKVTQtPESMLLAALMIVSMVVSL 174 5666788888999888899888884444444456677777665 PP == domain 2 score: 88.2 bits; conditional E-value: 1.1e-28 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHX CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnn 99 va v+l vq+ ++vn+ +kn ++ + Q id+kl +++n l + v+ +G+ ++sl+++ +l+C n C+T+ yn+se W+ v+ hl+g + T080890_1 570 VAGVALHSFVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQINDLRQTVIWMGDRLMSLEHRFQLQCDWNTSDFCITPQIYNESEhHWDMVRRHLQG--RE 667 57899999***************************************************************************************9..58 PP HHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XX.X.......XXX CS GP41 100 tevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqv.raevqllllkk 198 ++ ld+skl+++i ++++++ + ++ + + ++a lan ++ Wv+ i t ii+++ ++v l +lll+ + l ++ ++ ra + + +l k T080890_1 668 DNLTLDISKLKEQIFEASKAHLNLVPGTEAIAGVADGLANLNPV-TWVKTIGST-TIINLI-LILVCLFCLLLVCRCTQQLRRDSDHReRAMMTMVVLSK 764 899********************************999876555.8***76544.455554.45566666666644455666555543145555666666 PP XX CS GP41 199 kk 200 +k T080890_1 765 RK 766 66 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1034 (0.0634122); expected 326.1 (0.02) Passed bias filter: 578 (0.0354471); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 4167.10 // Query: T080890_2 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4167.10 // Query: T080890_3 [L=771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.033 14.1 10.4 0.092 12.6 10.4 1.8 1 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 10.4 5.6e-06 0.092 3 25 .. 555 577 .. 553 579 .. 0.94 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.6e-06 Toxin_18 3 CteTGrnCkysdecCSGAcSaaF 25 C + G nC +s+ cCS c a F T080890_3 555 CSDYGINCSHSYGCCSRSCIALF 577 *******************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4241.73 // Query: T352740_1 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 5287.24 // Query: T352740_2 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 5387.00 // Query: T352740_3 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 5387.00 // Query: T369083_1 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 9768.43 // Query: T369083_2 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 8.6 5.5 3.5 7.6 5.5 1.4 1 MRP-L28 Mitochondrial ribosomal protein L28 Domain annotation for each model (and alignments): >> MRP-L28 Mitochondrial ribosomal protein L28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 5.5 0.00021 3.5 44 118 .. 140 219 .. 133 225 .. 0.80 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00021 XXXXXXXXXXXXXXX.....XXXXXXXX-HHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHH-HH CS MRP-L28 44 Pveelivplksvdsak...rrqrkllelskeelerrallekqwaryrqq..ekekdeqlirqqleaqeealeeLkkvsee 118 P +l + +s+ +++ + q +ll+l + l+++ l+e +w ++r+ ++d++ + +++e q++al+ L+k+ e T369083_2 140 PTHQLQMLERSLREEElraQHQAALLRLREMALQEKTLAELAWLEHRRGclDSKRDRAVLAALVEKQQQALSRLEKEQRE 219 66666666666666551114566778889999***************9633688999*******************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 9768.43 // Query: T369083_3 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 9944.03 // Query: T125884_1 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 6226.51 // Query: T125884_2 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 6106.77 // Query: T125884_3 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.039 12.7 0.4 0.055 12.3 0.4 1.1 1 MdoG Periplasmic glucan biosynthesis protein, MdoG Domain annotation for each model (and alignments): >> MdoG Periplasmic glucan biosynthesis protein, MdoG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.4 3.4e-06 0.055 301 324 .. 97 120 .. 91 136 .. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 3.4e-06 --TTT-GGG--EEEEEESS---EE CS MdoG 301 qDlearYekRPslwvepkgdwgkG 324 qD+e+ +e+RPs w ep++dwg+ T125884_3 97 QDMETGWEQRPSQWPEPSQDWGAE 120 8*********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 5986.15 // Query: T324667_1 [L=3013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-15 56.8 165.0 0.0036 17.3 15.9 14.5 12 DUF4705 Domain of unknown function (DUF4705) ------ inclusion threshold ------ 0.068 13.6 0.3 15 6.1 0.1 2.7 2 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 4.6 1.7e-05 0.14 25 50 .] 325 350 .. 323 350 .. 0.88 2 ! 11.6 11.4 2.7e-05 0.22 2 41 .. 376 414 .. 375 426 .. 0.93 3 ? -3.4 0.0 1.4 1.1e+04 7 28 .. 913 940 .. 912 940 .. 0.84 4 ? -3.5 1.4 1.4 1.2e+04 38 49 .. 1285 1296 .. 1278 1302 .. 0.58 5 ! 12.2 13.9 1.8e-05 0.15 3 38 .. 1326 1372 .. 1324 1387 .. 0.73 6 ! 16.8 6.5 6.8e-07 0.0055 23 50 .] 1690 1717 .. 1689 1717 .. 0.95 7 ! 17.3 15.9 4.4e-07 0.0036 2 46 .. 1743 1790 .. 1742 1805 .. 0.92 8 ? 0.1 0.3 0.1 8.5e+02 6 29 .. 2007 2032 .. 2005 2054 .. 0.66 9 ! 11.9 12.3 2.2e-05 0.18 5 48 .. 2127 2189 .. 2124 2190 .. 0.92 10 ! 7.3 3.4 0.00062 5.1 8 41 .. 2171 2204 .. 2165 2210 .. 0.82 11 ! 9.8 5.5 9.8e-05 0.8 23 50 .] 2372 2399 .. 2371 2399 .. 0.95 12 ! 17.2 16.1 4.9e-07 0.004 2 46 .. 2425 2472 .. 2424 2484 .. 0.91 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.7e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+sCL T324667_1 325 ASASRMAASAGPAVPPGCISRPTSCL 350 5666679******************9 PP == domain 2 score: 11.6 bits; conditional E-value: 2.7e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 gp Pasr+p q +++ q+ + +p+ +Lp A +Gp lpp+ T324667_1 376 GPHPASRWPVQ-SQLWQQKSVCKPRCGLPGAYPGPALPPL 414 899********.*************************875 PP == domain 3 score: -3.4 bits; conditional E-value: 1.4 DUF4705 7 srrpLqa......paslqasglsrpsaq 28 srrpL a l a++ls ++a+ T324667_1 913 SRRPLSAwegpv*GKGLMATSLSVGGAC 940 7999999999888888889988888877 PP == domain 4 score: -3.5 bits; conditional E-value: 1.4 DUF4705 38 lppagLsrPssC 49 l +gL rPs++ T324667_1 1285 LKHGGLCRPSCS 1296 445566666432 PP == domain 5 score: 12.2 bits; conditional E-value: 1.8e-05 DUF4705 3 pAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl 38 p Pas++p +++l+++g srps++++ As+G+++ T324667_1 1326 PHPASQWPAPRvpalaaeerqqAPLLPPRGVSRPSSRPTTASRGQVP 1372 5566666533355555566666***********************98 PP == domain 6 score: 16.8 bits; conditional E-value: 6.8e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +srPssCL T324667_1 1690 GPASASLMAASAGPAVPPGCISRPSSCL 1717 5799***********************9 PP == domain 7 score: 17.3 bits; conditional E-value: 4.4e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324667_1 1743 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1790 899********.*************************988877776666 PP == domain 8 score: 0.1 bits; conditional E-value: 0.1 DUF4705 6 asrrpLqa......paslqasglsrpsaqL 29 a+rr+Lq+ + + g+s+++ + T324667_1 2007 AGRRRLQDdlglqrS----PGGPSWARRSP 2032 89*****96533330....44555554444 PP == domain 9 score: 11.9 bits; conditional E-value: 2.2e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324667_1 2127 PPSWRPLQAqlfllaaslgpaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 2189 779*****************************9643399**********************99 PP == domain 10 score: 7.3 bits; conditional E-value: 0.00062 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.ppa 41 + Lq + l++ gl +ps++ AsaGp +++ T324667_1 2171 SQALQ-AHILPPGGLYSPSSGSRRASAGPAVaSQG 2204 67899.99999999999999999999999884443 PP == domain 11 score: 9.8 bits; conditional E-value: 9.8e-05 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +sr ssCL T324667_1 2372 GPASASLMAASAGPAVPPGCISRLSSCL 2399 5799***********************9 PP == domain 12 score: 17.2 bits; conditional E-value: 4.9e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324667_1 2425 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 2472 899********.*************************988877766666 PP >> Ribosomal_S3_C Ribosomal protein S3, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.0044 36 23 48 .. 1568 1593 .. 1563 1598 .. 0.84 2 ? 6.1 0.1 0.0018 15 23 48 .. 2250 2275 .. 2245 2280 .. 0.85 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0044 Ribosomal_S3_C 23 mkagakGikiqvsGrLggaeiarsek 48 + ag +G ++ sGrLg ae ar+ k T324667_1 1568 LLAGRQGRETPTSGRLGPAEVARRPK 1593 45799******************876 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0018 Ribosomal_S3_C 23 mkagakGikiqvsGrLggaeiarsek 48 + ag +G ++ sGrLg ae ar+ k T324667_1 2250 LLAGRQGRETLTSGRLGPAEVARRPK 2275 45899******************876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 13902.71 // Query: T324667_2 [L=3013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.6 10.5 0.0014 18.6 10.5 15.8 14 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 4.0 3.3e-05 0.53 6 27 .. 328 361 .. 324 364 .. 0.91 2 ? -1.6 10.1 0.18 2.9e+03 9 50 .] 372 423 .. 369 423 .. 0.60 3 ? 0.2 5.0 0.049 8e+02 3 32 .. 398 426 .. 396 433 .. 0.89 4 ? -1.5 5.9 0.17 2.8e+03 13 27 .. 1289 1310 .. 1279 1315 .. 0.65 5 ! 7.7 10.6 0.00022 3.6 11 46 .. 1323 1373 .. 1317 1378 .. 0.80 6 ? 0.1 0.3 0.052 8.5e+02 6 29 .. 1574 1599 .. 1572 1621 .. 0.66 7 ! 9.9 14.3 4.5e-05 0.74 5 48 .. 1694 1756 .. 1691 1761 .. 0.92 8 ! 7.9 8.1 0.00019 3.1 2 32 .. 1764 1793 .. 1763 1802 .. 0.93 9 ? -0.6 0.6 0.089 1.4e+03 35 49 .. 2124 2138 .. 2121 2139 .. 0.83 10 ! 18.6 10.5 8.7e-08 0.0014 7 50 .] 2139 2180 .. 2133 2180 .. 0.85 11 ! 5.7 3.7 0.00093 15 3 33 .. 2187 2216 .. 2185 2219 .. 0.91 12 ! 10.5 13.7 3e-05 0.49 5 48 .. 2376 2438 .. 2373 2443 .. 0.92 13 ! 3.0 13.7 0.0065 1.1e+02 2 33 .. 2446 2476 .. 2445 2498 .. 0.86 14 ? -1.4 0.3 0.15 2.5e+03 2 18 .. 2479 2497 .. 2478 2506 .. 0.71 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 6 asrrpLqa............paslqasglsrpsa 27 +rpLqa pas+qas++++++ T324667_2 328 PAWRPLQAqlfllaaslgphPASQQASSFGSAPT 361 569****************************996 PP == domain 2 score: -1.6 bits; conditional E-value: 0.18 DUF4705 9 rpLqa....pasl..qasglsrpsaqLpvAsaGpkl....ppagLsrPssCL 50 + Lqa p l ++sg+ r+sa + vAs+G p gL Ps CL T324667_2 372 QALQAhilpPGGLysPSSGSRRASASPAVASQGHIQaqlsPHCGLPGPSPCL 423 5577444432223225566667777777777776556677888888888887 PP == domain 3 score: 0.2 bits; conditional E-value: 0.049 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvA 32 pA as+ + q +++ ++ gl ps +L +A T324667_2 398 PAVASQGHIQ-AQLSPHCGLPGPSPCLLPA 426 9*********.9999999999999998877 PP == domain 4 score: -1.5 bits; conditional E-value: 0.17 DUF4705 13 a.......paslqasglsrpsa 27 a pas+qas +++++a T324667_2 1289 AsagpavpPASQQASTFGSAPA 1310 2445556688888888888887 PP == domain 5 score: 7.7 bits; conditional E-value: 0.00022 DUF4705 11 Lqa...........paslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 Lqa +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324667_2 1323 LQAhilppsglhpeSQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1373 6666666666665566679********************988877776666 PP == domain 6 score: 0.1 bits; conditional E-value: 0.052 DUF4705 6 asrrpLqa......paslqasglsrpsaqL 29 a+rr+Lq+ + + g+s+++ + T324667_2 1574 AGRRRLQDdlglqrS----PGGPSWARRSP 1599 89*****96533330....44555554444 PP == domain 7 score: 9.9 bits; conditional E-value: 4.5e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324667_2 1694 PPSWRPLQAqlfllaaslgpaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 1756 779*****************************9643399**********************99 PP == domain 8 score: 7.9 bits; conditional E-value: 0.00019 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324667_2 1764 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1793 9**********.***************9888 PP == domain 9 score: -0.6 bits; conditional E-value: 0.089 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324667_2 2124 GLCLPHGGLCRPSCS 2138 777899******775 PP == domain 10 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324667_2 2139 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 2180 566888.99999984.34479**********************9 PP == domain 11 score: 5.7 bits; conditional E-value: 0.00093 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAs 33 pA a + + q +++l+++g s+++a++ A+ T324667_2 2187 PALAAEERQQ-APLLPPRGCSSARAGPVQAT 2216 9999999999.***************99887 PP == domain 12 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324667_2 2376 PPSWRPLQAqlfllaaslgsaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 2438 779*****************************9643399**********************99 PP == domain 13 score: 3.0 bits; conditional E-value: 0.0065 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAs 33 gpA as+ +Lq +++ ++ gl rps +L +A T324667_2 2446 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPAA 2476 9**********.*************9986653 PP == domain 14 score: -1.4 bits; conditional E-value: 0.15 DUF4705 2 gpAPasrrpLqa..paslq 18 +pAP sr+p a a l+ T324667_2 2479 RPAPPSRWPVEAgaHADLS 2497 69*******8875544455 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.55 # Mc/sec: 15672.15 // Query: T324667_3 [L=3012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-33 112.5 175.3 4.9e-05 23.3 9.3 15.0 14 DUF4705 Domain of unknown function (DUF4705) ------ inclusion threshold ------ 2.6 7.7 6.2 2e+02 1.7 0.1 4.2 4 PTP_N Protein tyrosine phosphatase N terminal Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.7 0.18 1.5e+03 35 49 .. 324 338 .. 320 339 .. 0.83 2 ! 21.9 4.1 1.7e-08 0.00014 26 50 .] 356 380 .. 334 380 .. 0.81 3 ! 14.5 13.1 3.5e-06 0.028 3 38 .. 387 421 .. 385 439 .. 0.90 4 ! 23.3 9.3 6.1e-09 4.9e-05 5 50 .] 1284 1329 .. 1281 1329 .. 0.85 5 ! 8.7 7.3 0.00022 1.8 2 32 .. 1347 1376 .. 1346 1385 .. 0.92 6 ? -0.6 0.6 0.18 1.4e+03 35 49 .. 1691 1705 .. 1688 1706 .. 0.83 7 ! 18.6 10.5 1.7e-07 0.0014 7 50 .] 1706 1747 .. 1700 1747 .. 0.85 8 ! 17.3 7.8 4.7e-07 0.0038 3 38 .. 1754 1788 .. 1752 1797 .. 0.88 9 ? -0.2 1.1 0.13 1.1e+03 2 21 .. 1797 1818 .. 1796 1827 .. 0.74 10 ! 16.8 6.5 6.8e-07 0.0055 23 50 .] 2122 2149 .. 2121 2149 .. 0.95 11 ! 16.7 8.8 7e-07 0.0057 2 46 .. 2175 2215 .. 2174 2222 .. 0.90 12 ? -0.6 0.6 0.18 1.4e+03 35 49 .. 2373 2387 .. 2370 2388 .. 0.83 13 ! 18.6 10.5 1.7e-07 0.0014 7 50 .] 2388 2429 .. 2382 2429 .. 0.85 14 ! 19.3 9.3 1.1e-07 0.00087 3 47 .. 2436 2484 .. 2434 2487 .. 0.90 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.18 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324667_3 324 GLCLPHGGLCRPSCS 338 77789999****775 PP == domain 2 score: 21.9 bits; conditional E-value: 1.7e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T324667_3 356 LAQLPPAFVDPEVSAAKLFRPTSCL 380 58**********************9 PP == domain 3 score: 14.5 bits; conditional E-value: 3.5e-06 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + +Lq +++ +++g srps+ +++As+G+++ T324667_3 387 PALAAEERLQ-APLWPPRGISRPSSPPTAASRGQVP 421 9*********.***********************98 PP == domain 4 score: 23.3 bits; conditional E-value: 6.1e-09 DUF4705 5 PasrrpLqa.....paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 P +rpLqa p+s qa aqLp+A+++p+ + a+L+rP+sCL T324667_3 1284 PQAWRPLQAqlfllPPSKQAL-----LAQLPPAFVDPEVSAAKLFRPTSCL 1329 6679****8766666666666.....89**********************9 PP == domain 5 score: 8.7 bits; conditional E-value: 0.00022 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324667_3 1347 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1376 9**********.**************99877 PP == domain 6 score: -0.6 bits; conditional E-value: 0.18 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324667_3 1691 GLCLPHGGLCRPSCS 1705 777899******775 PP == domain 7 score: 18.6 bits; conditional E-value: 1.7e-07 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324667_3 1706 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 1747 566888.99999984.34479**********************9 PP == domain 8 score: 17.3 bits; conditional E-value: 4.7e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + + q +++l+++g srps++++ As+G+++ T324667_3 1754 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVP 1788 9999999999.***********************97 PP == domain 9 score: -0.2 bits; conditional E-value: 0.13 DUF4705 2 gpAPasrrpLqa..paslqasg 21 gpAP sr+p a a l+ +g T324667_3 1797 GPAPPSRWPVEAgaHADLSRRG 1818 9********9876545555555 PP == domain 10 score: 16.8 bits; conditional E-value: 6.8e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +srPssCL T324667_3 2122 GPASASLMAASAGPAVPPGCISRPSSCL 2149 5799***********************9 PP == domain 11 score: 16.7 bits; conditional E-value: 7e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp A +p+l gL rP T324667_3 2175 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGAVLPPEL---GLYRP 2215 899********.**********************999...55555 PP == domain 12 score: -0.6 bits; conditional E-value: 0.18 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324667_3 2373 GLCLPHGGLCRPSCS 2387 777899******775 PP == domain 13 score: 18.6 bits; conditional E-value: 1.7e-07 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324667_3 2388 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 2429 566888.99999984.34479**********************9 PP == domain 14 score: 19.3 bits; conditional E-value: 1.1e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrPs 47 pA a + + q +++l+++g srps++++ As+G+++ p gL+ P+ T324667_3 2436 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVPacsrqPAYGLLLPH 2484 9999999999.************************999998888999887 PP >> PTP_N Protein tyrosine phosphatase N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.1 0.024 2e+02 9 18 .. 362 371 .. 362 373 .. 0.94 2 ? 1.7 0.1 0.024 2e+02 9 18 .. 1311 1320 .. 1311 1322 .. 0.94 3 ? 1.7 0.1 0.024 2e+02 9 18 .. 1729 1738 .. 1729 1740 .. 0.94 4 ? 1.7 0.1 0.024 2e+02 9 18 .. 2411 2420 .. 2411 2422 .. 0.94 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.024 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324667_3 362 AFVDPEVSAA 371 9*******97 PP == domain 2 score: 1.7 bits; conditional E-value: 0.024 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324667_3 1311 AFVDPEVSAA 1320 9*******97 PP == domain 3 score: 1.7 bits; conditional E-value: 0.024 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324667_3 1729 AFVDPEVSAA 1738 9*******97 PP == domain 4 score: 1.7 bits; conditional E-value: 0.024 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324667_3 2411 AFVDPEVSAA 2420 9*******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 15666.95 // Query: T069162_1 [L=2270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-11 43.6 0.1 3.7e-11 42.8 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.8 0.1 2.3e-15 3.7e-11 65 188 .. 453 556 .. 406 569 .. 0.78 Alignments for each domain: == domain 1 score: 42.8 bits; conditional E-value: 2.3e-15 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + ++++ lDlk+aF ++pl+ +++l+af+ ++ + +++ ++++lpqG+ SP f+ ++++ l +++ +l+ T069162_1 453 PSSTTHYSVLDLKDAFLTIPLHPPSQPLFAFTWTDP-------------------DTHQSQQLTWTVLPQGFRDSPHYFSQALSHDLLSFHPS--TSHLI 531 34559****************************988...................334599********************999888888875..79*** PP ECTTEEEEEESS.HHHHHHHHHHHH CS RVT_1 165 rYaDDililsks.keelqelleave 188 +Y+DD+l+ s s +++ q l ++ T069162_1 532 QYIDDLLFCSPSfESSQQDTLLLLQ 556 ***********95555433333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12026.08 // Query: T069162_2 [L=2270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-21 75.6 0.0 5.9e-21 74.7 0.0 1.4 1 rve Integrase core domain 1.1e-20 74.2 0.0 1.6e-20 73.6 0.0 1.3 1 RNase_H RNase H 4e-16 58.7 3.4 6.1e-16 58.1 3.4 1.3 1 TLV_coat ENV polyprotein (coat polyprotein) 0.0005 20.2 0.0 0.001 19.1 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.12 12.0 0.0 0.27 10.8 0.0 1.5 1 RVT_3 Reverse transcriptase-like Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.7 0.0 1.8e-24 5.9e-21 6 118 .. 1097 1205 .. 1095 1206 .. 0.89 Alignments for each domain: == domain 1 score: 74.7 bits; conditional E-value: 1.8e-24 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 + wq+D+t+++ + ++ +yllv++d+f++++ a+++ +e +a +vi l + ++g p + sDn +++ts+ ++++ + lgi++ ++ ++pq T069162_2 1097 QDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGSE-KATAVISSLLSDIILQFGL-PTSIQSDNRPAFTSQITQAVSQALGIQWNLHISYHPQ 1190 56*********..55556**********************.6666666666666666666.************************************* PP rve 104 dnGkvErfnrtlkde 118 + GkvE++n++lk++ T069162_2 1191 SSGKVEQTNGLLKTH 1205 ************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.6 0.0 4.9e-24 1.6e-20 3 142 .. 830 974 .. 828 975 .. 0.85 Alignments for each domain: == domain 1 score: 73.6 bits; conditional E-value: 4.9e-24 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 +++++ DGs+ + +++++ag+ ++++ + +++l++ +t +aEL A+++aL a ++ ++niytDSkY+++ +++ v +w ++++ tt+ + + T069162_2 830 DHTWFIDGSSTRPncHSPAKAGYaIVSST-SVIDATALPPSTTSEQAELVALTQALTlA--KGLCINIYTDSKYAFHILHHRVVTWAERGYLTTQGS-SI 925 579******9876688888****555544.5567788999****************977..99**************9999**********777666.6* PP TTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 99 knkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +n++l+++l ++a +k+ + +kgH+ + gN aD++A++aa T069162_2 926 INASLIKTLLKAALlPKEAGVIDCKGHQKAsepiALGNAYADKVARQAA 974 **8888877666655************665578877***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 3.4 1.9e-19 6.1e-16 468 560 .. 1939 2027 .. 1939 2028 .. 0.76 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 1.9e-19 HTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHH..HHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXX CS TLV_coat 468 LfleeGGlCaALkEeCCFyadksgivrdsiakLqerleq..rqrllednqlwfegllglspwlttllstilgpLlllLLiLllG.PcilnrLvqli 560 L++e+GGlC L+EeCCFy + sg+v d+i+kL++r ++ q + ++ w l + w++++l +pL+l+ L Lll Pci+ + q+i T069162_2 1939 LTAEKGGLCIFLNEECCFYLNLSGLVYDNIKKLKDRAQKlaNQASNYAEPPW--ALSNWMSWVLPIL----SPLILIFL-LLLF*PCIFCLVSQFI 2027 89*********************************98762233334445555..7888888888888....99976555.5556666666666665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.0 3.2e-07 0.001 66 100 .. 279 313 .. 264 314 .. 0.82 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 3.2e-07 ETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 66 lieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ +++ s+l++p++p++llGrd+L+kl + L T069162_2 279 CQFGQHSFMHSFLVIPTCPLPLLGRDILTKLPASL 313 4555555556********************98887 PP >> RVT_3 Reverse transcriptase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 8.1e-05 0.27 14 70 .. 849 899 .. 838 926 .. 0.78 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 8.1e-05 RVT_3 14 gagvvirdpngevllagaeklenlataeeaEalAlleGLqlAlklgirrlivegDsq 70 +ag++i + + v+ a a l + +t+e+aE+ Al ++L+lA+ l i + +Ds+ T069162_2 849 KAGYAIVS-STSVIDATA--LPPSTTSEQAELVALTQALTLAKGLCI---NIYTDSK 899 56666664.555777777..6699******************99854...4555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.60 # Mc/sec: 10823.47 // Query: T069162_3 [L=2269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-21 75.4 9.0 4.3e-16 58.6 3.0 2.2 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.4 1.2e-08 0.00019 243 278 .. 1523 1558 .. 1513 1561 .. 0.90 2 ! 58.6 3.0 2.6e-20 4.3e-16 260 462 .. 1733 1934 .. 1714 1944 .. 0.74 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.2e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavn 278 +++++++L a+npsl+ +CwlC+ +++ y a++ + T069162_3 1523 INLTHSLLAASNPSLVSNCWLCISLSSSAYTAVPAL 1558 6889*****************************976 PP == domain 2 score: 58.6 bits; conditional E-value: 2.6e-20 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX...XX CS TLV_coat 260 dCwlClesgppyyeaiavngsv.snktsapacslspqlkltlsevtgqgllig.kvPkthqalcnktektskgse.ylvapngtvfacntgltpclst 354 +C+l s+ ++ v + + +++++++++s++++++ l t l + + + q +++t ++ + + + ++g +f+c+ ++ T069162_3 1733 SCLLIPSSENNNERLLVVTQRFlIHHENQTSPSVQLPHQSPLQPLTAAALAATpG--VWVQDTPFSTPSHLFTLHlQFCLTQGLFFLCGSST----YM 1824 5555555554444444444333033444333666666666555555555533332..22333333334333333338899********9865....69 PP XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXX...XXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 355 allnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGL...giaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskl 447 l+++ t+ C l+ l P+i++++ ++ + t++kR + l++lL+ L + ++++gtG++g+ s+++f +L++ + ++++ s l T069162_3 1825 CLPANQTGTCTLVFLTPKIQFANRTkELPVPLMTLTQQKR---VIPLVPLLVSLglsASTTALGTGIAGIsTSVTTFCSLSNDFSPSITDISQTSSVL 1919 9*********************9988888889999*****...89999999988446667899*********************************** PP HHHHHHHHHHHHHHH CS TLV_coat 448 eksltslaevvlQNR 462 + +++sl vvlQNR T069162_3 1920 QAQVDSLTAVVLQNR 1934 **************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 9835.19 // Query: T139880_1 [L=2361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 9789.01 // Query: T139880_2 [L=2361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 9513.27 // Query: T139880_3 [L=2361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 10894.23 // Query: T001690_1 [L=1866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.5 0.0 0.28 11.0 0.0 1.6 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 1.7e-05 0.28 37 82 .. 627 673 .. 611 683 .. 0.79 2 ? -3.0 0.0 0.39 6.4e+03 4 23 .. 1408 1427 .. 1407 1433 .. 0.84 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 1.7e-05 HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 37 kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 k+ gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001690_1 627 KRAGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 673 689********************853788888888877777777765 PP == domain 2 score: -3.0 bits; conditional E-value: 0.39 HHTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 4 IengklGevvsvdvwtldtr 23 ++ g++G++ +++ w+ + + T001690_1 1408 LRRGSIGKPCMFHFWFNQAF 1427 6789*********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.69 # Mc/sec: 7736.68 // Query: T001690_2 [L=1865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 7846.25 // Query: T001690_3 [L=1865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 8746.64 // Query: T295987_1 [L=1796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-05 24.2 0.0 2.5e-05 23.7 0.0 1.1 1 Serpin Serpin (serine protease inhibitor) Domain annotation for each model (and alignments): >> Serpin Serpin (serine protease inhibitor) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 1.5e-09 2.5e-05 315 366 .. 366 417 .. 365 420 .. 0.86 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 1.5e-09 EEEESSSEEEEEEEEECCTTCS-SSEEEEEECSEEEEEEEETTTTEEEEEEE CS Serpin 315 fievnEeGteaaaatvatllskksspvefkvdrPFlflireektgliLFlGk 366 f+ev Ee t+aa a+ +t ++++s+ +f++ +P lf++++++t+++LF+G+ T295987_1 366 FMEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGR 417 789************5555555666668***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 7784.93 // Query: T295987_2 [L=1796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 7904.69 // Query: T295987_3 [L=1795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 7664.46 // Query: T182962_1 [L=6634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.38s 00:00:02.48 Elapsed: 00:00:00.86 # Mc/sec: 22068.31 // Query: T182962_2 [L=6634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 709 (0.0434809); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.46u 0.47s 00:00:02.93 Elapsed: 00:00:00.97 # Mc/sec: 19565.72 // Query: T182962_3 [L=6633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.2 3.2e+02 1.4 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.3 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.034 5.6e+02 89 121 .. 5484 5516 .. 5480 5521 .. 0.89 4 ? 0.4 0.0 0.04 6.6e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.0 0.0 0.11 1.8e+03 94 121 .. 5577 5604 .. 5567 5609 .. 0.82 6 ? 1.1 0.0 0.025 4.1e+02 88 121 .. 5615 5648 .. 5590 5652 .. 0.86 7 ? -0.7 0.0 0.091 1.5e+03 88 121 .. 5659 5692 .. 5635 5697 .. 0.79 8 ? 1.4 0.0 0.02 3.2e+02 88 121 .. 5703 5736 .. 5677 5756 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182962_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182962_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182962_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.04 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182962_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182962_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 66677777889***************96 PP == domain 6 score: 1.1 bits; conditional E-value: 0.025 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182962_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 57788899999999******************97 PP == domain 7 score: -0.7 bits; conditional E-value: 0.091 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182962_3 5659 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5692 56666677777778889***************96 PP == domain 8 score: 1.4 bits; conditional E-value: 0.02 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182962_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.13u 0.36s 00:00:02.48 Elapsed: 00:00:00.96 # Mc/sec: 19766.55 // Query: T266277_1 [L=3245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.71 # Mc/sec: 13075.20 // Query: T266277_2 [L=3245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-95 318.8 20.5 2.5e-92 309.5 10.8 2.3 2 Transposase_22 L1 transposable element 4.6e-06 26.0 2.1 9.1e-06 25.1 2.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.25 11.2 1.8 0.64 9.9 0.3 2.3 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 2.1 1.9e-06 0.011 35 121 .. 957 1035 .. 952 1039 .. 0.78 2 ! 309.5 10.8 4.5e-96 2.5e-92 146 368 .] 1042 1266 .. 1041 1266 .. 0.97 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.9e-06 .XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 35 eeldpdlkdflelriedik...kdfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 e++++++d ++l + +++ k +++elke + ++ ke + +k ++e + v + k+l+elkt +el +++ T266277_2 957 MEQSWMKNDIDQLTEIGFRr*vKTNFSELKEHVLTHLKEAKsLEKRLDEWLTRINS------------VEKNLKDLMELKTMERELCNTCT 1035 49****************95555*****************9888999985544333............22234678888888888877775 PP == domain 2 score: 309.5 bits; conditional E-value: 4.5e-96 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE.EE CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei.yr 236 +++eer+s +ed+++ei++e k ekr+k+ eq lq+ d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iq i + T266277_2 1042 NQVEERISVIEDQMNEINQEDKCGEKRVKRTEQGLQE-I*DYVKRPNLCLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQKI*K- 1132 699*********************************8.6779**********************************************8666. PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH..HHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre..wtdviqilkekkfqPrllyPaklsiiidGe 327 tP+r++ +ra++rhii+r tkv++k+k+l+a+rek +vt kGkPirltadl aetl+a re t ++ilkek+fqPr++y akls+i++Ge T266277_2 1133 TPQRYSLRRATPRHIIIRCTKVEMKEKMLRAAREKDQVTHKGKPIRLTADLLAETLQAGRE*gLT--FNILKEKNFQPRISYTAKLSFISEGE 1223 9***********************************************************88565..9************************* PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f d ++lrd+++trPal++llke ++er++ryq+l++++ T266277_2 1224 IKSFTDNKMLRDFVTTRPALQELLKEvlNMERNNRYQPLQKHA 1266 ****************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 2.1 1.7e-09 9.1e-06 4 19 .] 2525 2540 .. 2525 2540 .. 0.98 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 1.7e-09 DUF1725 4 gKWMELEnIILSEisQ 19 g+WM+LE+IILS+isQ T266277_2 2525 GTWMKLETIILSKISQ 2540 9**************9 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.3 0.00012 0.64 25 48 .. 999 1022 .. 994 1024 .. 0.91 2 ? -1.0 0.1 0.29 1.6e+03 27 42 .. 1599 1614 .. 1598 1619 .. 0.79 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00012 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D+ +ri++ Ek+++dlm+ T266277_2 999 LEKRLDEWLTRINSVEKNLKDLME 1022 568********************7 PP == domain 2 score: -1.0 bits; conditional E-value: 0.29 HSBP1 27 sriDdMssriDdLEks 42 s+iD ++s + +LEk+ T266277_2 1599 SKIDTLTSQLKELEKQ 1614 6888888888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 699 (0.0428677); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.75 # Mc/sec: 12377.86 // Query: T266277_3 [L=3245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-20 71.5 0.2 1e-19 70.8 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.8 0.2 6.3e-24 1e-19 54 193 .. 1864 2013 .. 1855 2036 .. 0.91 Alignments for each domain: == domain 1 score: 70.8 bits; conditional E-value: 6.3e-24 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS RVT_1 54 aveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnell 151 ++++++ ++k+++ +++++++D +kaF +++ ++ l++l++++++ + + +i++++ +++ ++ +ng++ e ++ k+g++q ++lS llfn++++ T266277_3 1864 QINKCNPSIKQTNDKNHMITIDAEKAFKRIQQHFMLKTLNKLGIDGMYLIIIRTIYDKPTDNIILNGQKLEAFPLKTGTRQECPLSSLLFNIVLEVPA 1961 458888999999********************************************************99**************************99 PP TT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 152 relrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 r + ++ ++ tl+++aDD++++ ++ ++q++ + ++++ k+ T266277_3 1962 RAIWQEKaikgiqlgkEEATLSLFADDMIVYLENpIVSAQNHHKLISNFSKS 2013 99988878**************************666699999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.85 # Mc/sec: 10921.64 // Query: T172336_1 [L=1630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 7065.38 // Query: T172336_2 [L=1629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-05 24.4 0.0 4.9e-05 23.4 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 3e-09 4.9e-05 5 55 .. 377 428 .. 374 439 .. 0.85 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 3e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaL 55 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172336_2 377 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRAS 428 68*******99999******766766.557778999**************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 6657.56 // Query: T172336_3 [L=1629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6563.79 // Query: T165126_1 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1470 (0.0901509); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 236 (0.0144732); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.52u 0.54s 00:00:04.06 Elapsed: 00:00:01.04 # Mc/sec: 3144.16 // Query: T165126_2 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1144 (0.0701582); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.47s 00:00:02.54 Elapsed: 00:00:00.92 # Mc/sec: 3551.16 // Query: T165126_3 [L=1142] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1142 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.93 # Mc/sec: 3512.98 // Query: T052144_1 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.64 # Mc/sec: 5462.40 // Query: T052144_2 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 5544.56 // Query: T052144_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 5726.35 // Query: T274084_1 [L=1175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 4734.47 // Query: T274084_2 [L=1175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 5093.14 // Query: T274084_3 [L=1175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 5697.42 // Query: T337175_1 [L=6945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1413 (0.0866552); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 283 (0.0173556); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.67u 0.60s 00:00:06.27 Elapsed: 00:00:01.11 # Mc/sec: 17899.52 // Query: T337175_2 [L=6945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1836 (0.112597); expected 326.1 (0.02) Passed bias filter: 492 (0.0301729); expected 326.1 (0.02) Passed Vit filter: 432 (0.0264933); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.58u 0.67s 00:00:08.25 Elapsed: 00:00:01.52 # Mc/sec: 13071.36 // Query: T337175_3 [L=6945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1395 (0.0855513); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 178 (0.0109162); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.37u 0.51s 00:00:04.88 Elapsed: 00:00:01.07 # Mc/sec: 18568.66 // Query: T090320_1 [L=1472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-11 42.4 1.6 5.2e-11 42.4 1.6 1.8 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.3 0.79 1.3e+04 29 54 .. 270 294 .. 268 296 .. 0.70 2 ! 42.4 1.6 3.2e-15 5.2e-11 15 55 .. 580 620 .. 577 633 .. 0.93 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.79 Colipase-like 29 ClknseskekfCkareiflqClklrk 54 C+ ++e++ + k+r++++ +++ + T090320_1 270 CVCKRERE-REMKPRSVAQAGVQWHD 294 77766544.44589999999998875 PP == domain 2 score: 42.4 bits; conditional E-value: 3.2e-15 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090320_1 580 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 620 567************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 6103.10 // Query: T090320_2 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 6098.96 // Query: T090320_3 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-32 111.8 10.9 2.1e-32 111.0 10.9 1.4 1 Colipase-like Colipase-like ------ inclusion threshold ------ 8.8 6.0 10.9 3.8 7.1 1.8 2.5 2 Colipase Colipase, N-terminal domain Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 111.0 10.9 2.6e-36 2.1e-32 12 89 .] 620 696 .. 615 696 .. 0.97 Alignments for each domain: == domain 1 score: 111.0 bits; conditional E-value: 2.6e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090320_3 620 EPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 696 79*******************9.99***************************************************97 PP >> Colipase Colipase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 2.0 0.008 65 13 28 .. 625 640 .. 614 646 .. 0.75 2 ? 7.1 1.8 0.00046 3.8 10 38 .. 663 691 .. 661 693 .. 0.87 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.008 B-SSGGGBSSS-EE-S CS Colipase 13 lClNSaQCKSkCCqhe 28 C C S+CC ++ T090320_3 625 RCSHDSECQSSCCVRN 640 5888889******876 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00046 TTSB-SSGGGBSSS-EE-SSSSS--EE-- CS Colipase 10 dGElClNSaQCKSkCCqhesaLslaRCaa 38 +G+ C C S+CC + s RC + T090320_3 663 NGDFCSSHQECHSQCCIQLREYSPFRCIP 691 7999999999******9999998888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 6898.82 // Query: T235812_1 [L=6826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.50s 00:00:02.93 Elapsed: 00:00:00.89 # Mc/sec: 21941.60 // Query: T235812_2 [L=6825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.36u 0.46s 00:00:02.82 Elapsed: 00:00:00.92 # Mc/sec: 21223.01 // Query: T235812_3 [L=6825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.42s 00:00:02.83 Elapsed: 00:00:00.98 # Mc/sec: 19923.64 // Query: T123531_1 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 5923.33 // Query: T123531_2 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 5470.25 // Query: T123531_3 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 6685.87 // Query: T372519_1 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 2870.37 // Query: T372519_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.64 # Mc/sec: 2690.97 // Query: T372519_3 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 3189.30 // Query: T305700_1 [L=2018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.035 13.4 7.9 0.052 12.8 7.9 1.1 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 7.9 3.2e-06 0.052 196 325 .. 1107 1307 .. 1100 1310 .. 0.44 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.2e-06 Plasmodium_Vir 196 npkkllsklsCknk............................................................................... 209 n+k+ l+klsC+ + T305700_1 1107 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfs 1199 666667777777666777777777777777777777777777777777777777777777777777777777777777777665555555443 PP Plasmodium_Vir 210 .....spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvse 296 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ T305700_1 1200 sssssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSS 1279 222211.....111111111111111111111111111111........11111111211111222222222222222222222222222222 PP Plasmodium_Vir 297 elssnfirniimaaailgtgiflfsylly 325 +ss + + + a+++ + ++ fsy+ly T305700_1 1280 SSSSSSSPSPS-SASASAASFSSFSYFLY 1307 22222222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1145 (0.0702196); expected 326.1 (0.02) Passed bias filter: 444 (0.0272292); expected 326.1 (0.02) Passed Vit filter: 263 (0.016129); expected 16.3 (0.001) Passed Fwd filter: 66 (0.00404759); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.74u 0.41s 00:00:03.15 Elapsed: 00:00:01.00 # Mc/sec: 5773.15 // Query: T305700_2 [L=2018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.66 # Mc/sec: 8747.20 // Query: T305700_3 [L=2018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 651 (0.039924); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.63 # Mc/sec: 9163.74 // Query: T020141_1 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 5873.64 // Query: T020141_2 [L=1313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.4 4.4 0.57 10.1 0.1 3.0 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 1.0 0.0027 44 10 21 .. 337 348 .. 335 350 .. 0.92 2 ? 10.1 0.1 3.5e-05 0.57 17 29 .. 1172 1184 .. 1170 1185 .. 0.96 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.0027 Toxin_18 10 CkysdecCSGAc 21 C y + cCS Ac T020141_2 337 CPYTAWCCSWAC 348 99*********9 PP == domain 2 score: 10.1 bits; conditional E-value: 3.5e-05 Toxin_18 17 CSGAcSaaFgyCL 29 CSG Sa F++CL T020141_2 1172 CSGMISAHFNLCL 1184 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.69 # Mc/sec: 5443.87 // Query: T020141_3 [L=1313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.75 # Mc/sec: 5008.36 // Query: T122634_1 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.65 # Mc/sec: 5536.81 // Query: T122634_2 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1217 (0.0746351); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.45s 00:00:01.68 Elapsed: 00:00:00.80 # Mc/sec: 4498.66 // Query: T122634_3 [L=1257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.64 # Mc/sec: 5618.85 // Query: T015055_1 [L=1683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-145 482.2 22.3 5e-114 380.8 17.7 2.2 2 Transposase_22 L1 transposable element 0.0067 16.5 7.9 0.014 15.4 7.9 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain ------ inclusion threshold ------ 0.035 13.8 2.3 0.058 13.1 2.3 1.3 1 Sec34 Sec34-like family 0.037 14.5 8.6 0.028 14.8 6.3 2.0 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.042 14.2 4.5 0.096 13.1 4.5 1.6 1 Spectrin Spectrin repeat 0.051 12.5 0.2 0.075 11.9 0.2 1.1 1 ArAE_2_N Putative ER transporter, 6TM, N-terminal 0.14 10.3 3.7 0.2 9.8 3.7 1.1 1 DUF4613 Domain of unknown function (DUF4613) 0.18 11.6 1.4 0.33 10.8 1.4 1.3 1 DUF1664 Protein of unknown function (DUF1664) 0.57 7.9 4.1 0.81 7.4 4.1 1.1 1 Prominin Prominin 1.4 9.3 7.5 33 4.9 7.5 2.5 1 DUF16 Protein of unknown function DUF16 3.8 6.5 5.5 6.6 5.7 5.5 1.3 1 TMPIT TMPIT-like protein 4.6 6.9 18.9 0.31 10.7 13.9 1.5 2 IncA IncA protein 6.1 7.1 6.7 2 8.6 1.5 2.7 3 TSC22 TSC-22/dip/bun family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 380.8 17.7 4e-117 5e-114 13 305 .. 377 638 .. 370 640 .. 0.96 2 ! 103.6 0.1 7.5e-33 9.4e-30 301 368 .] 1146 1215 .. 1127 1215 .. 0.95 Alignments for each domain: == domain 1 score: 380.8 bits; conditional E-value: 4e-117 XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX.............. CS Transposase_22 13 dnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlkiikekqentskqvm 100 ++k +++s+P ke+sssPat e+++ ++df+elr+e +++++y+el+e+i++k+ke+e ++k++ee ntek+lk T015055_1 377 LETKKQSTSPPLKERSSSPAT--EQSWTENDFDELREEVFRRSNYSELREDIQTKGKEVEnFEKNLEEcitritNTEKCLK-------------- 455 46899****************..*********************************************8888888888888.............. PP ....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE CS Transposase_22 101 emnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrli 195 el+elktk++el++e++ sl+sr+deleervsa+ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrli T015055_1 456 ----ELMELKTKARELREECR------------------SLRSRCDELEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLI 528 ....9****************..................******************************************************** PP S--.--TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---H CS Transposase_22 196 Gvd.esedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsa 289 Gv+ + e+++klen+l++ii+e fPnl+++an++iqei+rtP+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvtlkGkPirltadl a T015055_1 529 GVP*S-DGENGTKLENTLQDIIQEKFPNLARQANIQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLPA 622 **776.5689************************************************************************************* PP HHHHHHHHHHHHHHHH CS Transposase_22 290 etlkarrewtdviqil 305 etl+arrew+++++il T015055_1 623 ETLQARREWGPIFNIL 638 **************98 PP == domain 2 score: 103.6 bits; conditional E-value: 7.5e-33 HHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 301 viqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ++ilke++fqPr++yPakls+i++Geik f dk++lrd+++trPalk+llke ++er++ryq+l++++ T015055_1 1146 RVNILKENNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALKELLKEvlNMERNNRYQPLQNHA 1215 579*****************************************************************96 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 7.9 1.2e-05 0.014 9 100 .. 404 495 .. 399 498 .. 0.97 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 1.2e-05 H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +++++++e + +R +++++ +++ ++ ++ ++ lee+ ++ + k +++++ k +a el++e ++l + ++le++++++e+e++++ T015055_1 404 NDFDELREEVFRRSNYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDELEERVSAMEDEMNEM 495 79***************************************************************************************986 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 2.3 4.6e-05 0.058 3 63 .. 434 494 .. 432 501 .. 0.90 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 4.6e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrleelaee 63 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c++l e + +e+ +e T015055_1 434 ENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDELEERVSAMEDEMNE 494 688999******************************************9988887776655 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.4 0.41 5.1e+02 29 65 .. 408 445 .. 373 454 .. 0.53 2 ? 14.8 6.3 2.2e-05 0.028 3 95 .. 419 520 .. 417 522 .. 0.70 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.41 Syntaxin-6_N 29 edtsss....tseeldetrteLrkalrsiewdledLeetvr 65 e+ + ++++++e+r++++++ +++e+ ++Lee + T015055_1 408 EL---ReevfRRSNYSELREDIQTKGKEVENFEKNLEECIT 445 22...022235555666666666666666655555555553 PP == domain 2 score: 14.8 bits; conditional E-value: 2.2e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafvee 90 + e +e++q + +++e+ +++ +++ ++++ ++ el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e T015055_1 419 YSELREDIQTKGKEVENFEKNLeeciTRITNTEKClKELMELKTKARELREECRSLRSRCDELEERVSAMEDemneMKREGKFREKRIKRNEQSLQE 515 6677888887777777777777321233333333344899***************************999873322224477788888888888877 PP Syntaxin-6_N 91 vreev 95 + + v T015055_1 516 IWDYV 520 76655 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 4.5 7.6e-05 0.096 2 94 .. 432 522 .. 431 525 .. 0.94 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 7.6e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++++l ++++ l+ ++ +erv a ++ +++ eg++ +++i+ + l+e W+ +k+ T015055_1 432 EVENFEKNLEECITRITNTEKCL--KELMELKTKARELREECRSLRSRCDELEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 522 6789*******************..77778999999****************************************************99875 PP >> ArAE_2_N Putative ER transporter, 6TM, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.2 6e-05 0.075 242 353 .. 401 512 .. 392 551 .. 0.80 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 6e-05 ArAE_2_N 242 fnskflatlepsneselnfkklekditkirslypkleavlsflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravvl....kserssk 337 ++++ + +l+++ +n+++l++di+ +++++ e l +++ ++ + ++++++el++ r l +L +d lee+++++ + +r+ k T015055_1 401 WTENDFDELREEVFRRSNYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDELEERVSAMEdemnEMKREGK 500 5667777777777667********************************************************************9866665554455555 PP ArAE_2_N 338 larnshaklfseieks 353 +++ k+ ++ e+s T015055_1 501 FRE----KRIKRNEQS 512 554....333333333 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 3.7 0.00016 0.2 513 597 .. 381 466 .. 370 477 .. 0.65 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00016 DUF4613 513 ssessvaletldaepvnrsaalasasstsdesstpespkve...............kkknlekekeaeqlskelerlsekltevqqsLseltdllqngkk 597 ++++s l++ +p++++ +++ + +++ +k ke+e+++k+le+ ++++t+ +++L el++l+++ ++ T015055_1 381 KQSTSPPLKERSSSPATEQSWTENDF--------------DelreevfrrsnyselREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARE 466 23333334444444444333333322..............133333444444444588888999*****************************9998776 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 1.4 0.00026 0.33 65 122 .. 430 490 .. 416 499 .. 0.67 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00026 DUF1664 65 sqridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 +++++ +k+l+e++ +++++ +e++e++ + +e++e+ +s+++ +Le++++ +e+ T015055_1 430 GKEVENFEKNLEECITRITNTEkclKELMELKTKARELREECRSLRSRCDELEERVSAMED 490 4567777777777776665555222466677777777777777777777777777777765 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 4.1 0.00064 0.81 202 352 .. 417 570 .. 377 590 .. 0.77 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00064 Prominin 202 qnyeeleehvs...ddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCs 297 ny+el+e++ +++++ +k+l + + + + + + L+el +l ++ +e +e+ +++++ eL + s ++d ++++kr+ + + + ++++ + T015055_1 417 SNYSELREDIQtkgKEVENFEKNLEECITRITNTE--KCLKELMELKTKARELREECRSLRSRCDELEERVSAMEDEMNEMKREGKFREKRiKRNEQSLQ 514 46777777766222356666777777777766666..788888888888888888888888888888888888888888888877666666333347777 PP Prominin 298 kilssleiekldtskcl.dqlpnvdevlealeevletnlssivkeglarlneipek 352 +i + ++ + l + + +n +++ ++l++++++++ +++++++ +++ei+++ T015055_1 515 EIWDYVKRPNLRLIGVP*SDGENGTKLENTLQDIIQEKFPNLARQANIQIQEIQRT 570 77777777777776666888899999999999999999999999999999999886 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 7.5 0.026 33 32 99 .. 460 527 .. 375 529 .. 0.73 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.026 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 k++ +++ ++ ++l + ++le+ v++ +++++e+k e k +++++++ +++l+ i + +++ n Rl T015055_1 460 LKTKARELREECRSLRSRCDELEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRL 527 33444445555559999999999999999999999999999999999999999999998888777766 PP >> TMPIT TMPIT-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 5.5 0.0052 6.6 9 87 .. 424 511 .. 414 523 .. 0.52 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0052 TMPIT 9 kefkeleethkkykqkleels...klqskcskeikkqkkrlkelksslkklkksvk......eeeeeeveelkeelkerkkvlkeves 87 +++++ ++ ++++++lee+ + +kc ke+ + k +++el+++ ++l+++ + + e+e++e+k+e k r+k +k+ e+ T015055_1 424 EDIQTKGKEVENFEKNLEECItriTNTEKCLKELMELKTKARELREECRSLRSRCDeleervSAMEDEMNEMKREGKFREKRIKRNEQ 511 4444333333444444444330002345666667777777777777777777665433333344444555555555555555555554 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 13.9 0.00025 0.31 76 177 .. 400 514 .. 376 522 .. 0.71 2 ? -3.8 0.2 6.7 8.4e+03 113 150 .. 547 582 .. 540 602 .. 0.60 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00025 IncA 76 e...................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirelrels 153 s+l e+++ +++ e+ le+ +r+ +e++lk+l e +++ + ee +s++sr+++lee++++++ e+ e+ T015055_1 400 SwtendfdelreevfrrsnySELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARelrEECRSLRSRCDELEERVSAMEDEMNEMK--- 496 1555666666667788888889999999999999999999999999999999999999999999997778888888888888888888888888888... PP IncA 154 dlkeevqelrselerlqedlqrlq 177 +e + +++++r+ q lq T015055_1 497 ---REGKFREKRIKRN---EQSLQ 514 ...3333333333333...33333 PP == domain 2 score: -3.8 bits; conditional E-value: 6.7 IncA 113 dleedleslqeelksvesrlesleesikelakeirelr 150 d+++++ ++ ++ + +++++++ ++++++ ++ r T015055_1 547 DIIQEKFPNL--ARQANIQIQEIQRTPQRYSSRRATPR 582 4444444444..56666666666666666666666555 PP >> TSC22 TSC-22/dip/bun family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.2 0.0057 7.2 22 44 .. 456 478 .. 451 482 .. 0.88 2 ? 8.6 1.5 0.0016 2 13 42 .. 468 497 .. 466 501 .. 0.91 3 ? -1.3 0.2 2.1 2.6e+03 22 39 .. 1191 1208 .. 1187 1214 .. 0.87 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0057 TSC22 22 kIkeLeernseleeENslLkala 44 + +eL + +el+eE++ L++ + T015055_1 456 ELMELKTKARELREECRSLRSRC 478 5789****************988 PP == domain 2 score: 8.6 bits; conditional E-value: 0.0016 TSC22 13 rEeVevLkekIkeLeernseleeENslLka 42 rEe L+++ eLeer+s++e E + +k+ T015055_1 468 REECRSLRSRCDELEERVSAMEDEMNEMKR 497 9***********************887775 PP == domain 3 score: -1.3 bits; conditional E-value: 2.1 TSC22 22 kIkeLeernseleeENsl 39 keL++++ ++e+ N++ T015055_1 1191 ALKELLKEVLNMERNNRY 1208 5799**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1105 (0.0677665); expected 326.1 (0.02) Passed bias filter: 397 (0.0243469); expected 326.1 (0.02) Passed Vit filter: 111 (0.00680731); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.72 # Mc/sec: 6687.19 // Query: T015055_2 [L=1683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-09 36.3 0.0 8.8e-09 35.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 9.2e-09 35.0 1.6 1.9e-08 34.0 1.6 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 3.6 7.5 5.5 11 6.0 1.7 2.2 2 Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 1.6e-12 8.8e-09 1 113 [] 1250 1469 .. 1250 1469 .. 0.86 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 1.6e-12 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nv g ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T015055_2 1250 LTLNVHG----LNAPIKRHRLANWIKSQDPSVCCIQETHLTGRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkegh*smv 1339 6899999....7778899*******************9888777666666886677788899999***********7777888*********** PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 ++ GDfN+ T015055_2 1340 kgpiqqeeltilniyapntgaprfikqvlsdlqrdldshTLIIGDFNTplstlhrstrqkvnkdtqelnsalhqpdlidiyrtlhpksteytff 1433 ************************************************9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T015055_2 1434 saphhtysKIDHILGSKALLSKCKRTEIITNYlSDH 1469 9999999999******95554444444443336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 1.6 3.6e-12 1.9e-08 2 118 .. 1349 1472 .. 1348 1473 .. 0.80 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 3.6e-12 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + +++++ ++ +eL + l++ +l + ++k++ tf s + T015055_2 1349 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIIGDFNTPLSTLHRSTRQKvNKDTQELNSALHQPDLIDIyrtLHPKSTeYTFFSAPHh 1438 7999***9999.777777778888888876.89*********877777666667***************99666664444444777666665 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH++i T015055_2 1439 tYSKIDHILGSKALLSKckRTEIITNYLSDHSAI 1472 68***************98666779******998 PP >> Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.1 0.021 1.2e+02 31 78 .. 1366 1413 .. 1363 1421 .. 0.92 2 ? 6.0 1.7 0.0019 11 18 108 .. 1556 1650 .. 1549 1651 .. 0.84 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.021 Baculo_PEP_C 31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalna 78 q+l++l+++ld+ ++++++ l+ l + ++++++ +++L++al + T015055_2 1366 QVLSDLQRDLDSHTLIIGDFNTPLSTLHRSTRQKVNKDTQELNSALHQ 1413 8999999999999999**************************999875 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0019 Baculo_PEP_C 18 LtnvLnairlqnvq.ilaqlatlldaietqLnalsedlk.sllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnLlssvtNinstL 108 Lt +L+ + q+ + a ++ +++i +L++++++ + + ++e+++ + + ++++++ l++l + +n++++++++ +++++ t i++t+ T015055_2 1556 LTSQLKELEKQEQThSKASRSQEITKIRAELKEIETQNTlQKINEFRSWFFERINKIDRPLARLIkkKREKNQIDTIKNDKGDITTDPTEIQTTI 1650 788888887776541457778999**********885332448899999**************99777889**********************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1131 (0.069361); expected 326.1 (0.02) Passed bias filter: 316 (0.0193794); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.74 # Mc/sec: 6506.46 // Query: T015055_3 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 7518.62 // Query: T153833_1 [L=3898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 638 (0.0391267); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.25u 0.36s 00:00:02.61 Elapsed: 00:00:00.90 # Mc/sec: 12390.57 // Query: T153833_2 [L=3897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.70 # Mc/sec: 15926.65 // Query: T153833_3 [L=3897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.39s 00:00:02.00 Elapsed: 00:00:00.70 # Mc/sec: 15926.65 // Query: T101401_1 [L=1252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 6070.78 // Query: T101401_2 [L=1252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 6512.29 // Query: T101401_3 [L=1252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 6512.29 // Query: T230561_1 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-08 31.6 0.4 1.7e-07 30.7 0.4 1.4 1 RVT_thumb Reverse transcriptase thumb domain 2.2e-05 23.9 0.0 3e-05 23.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.015 15.2 0.4 0.027 14.3 0.4 1.3 1 Borrelia_orfX Orf-X protein 0.14 12.4 0.1 1.4 9.1 0.1 2.1 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.4 4.1e-11 1.7e-07 1 27 [. 1682 1708 .. 1682 1711 .. 0.94 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 4.1e-11 ES-B----SSSEBHHHHHHHHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWi 27 pqk+++r+d+lk LN+fQkLlgd NWi T230561_1 1682 PQKIEIRKDTLKALNEFQKLLGDTNWI 1708 6*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 7.4e-09 3e-05 143 222 .] 1603 1675 .. 1603 1675 .. 0.95 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7.4e-09 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 fn + ++l+++r +++++++++Y+D il++++++++l ++ +++ ++++gl+i +K++ ++++yLG+++ T230561_1 1603 FNYLSAQALQPVRDKFSDCYIVHYVD-ILCAAETRDKLIDRYTFLQTEVANAGLTITSDKIQTS------TPFRYLGMQV 1675 677778999****************5.*************************************......8******985 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.4 6.7e-06 0.027 52 127 .. 2079 2154 .. 2073 2159 .. 0.84 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 6.7e-06 Borrelia_orfX 52 evyalitsgkqmlltflnldvlnmfm.flltlfpifswplftlenqhvtvfniycfvfllqeslkplkqimdlvila 127 evy+l+ gk m t+l l+ + m l+ + + + e+ + +iy++vfl e++k lkq m +v + T230561_1 2079 EVYVLMCYGKWMSCTYLHLENCHLSM*QLILIHISYG-QPARQEKVLPMLKDIYYLVFLSWEFQKKLKQTMGQVTVV 2154 9******************988888887765554454.5567788888999********************988665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.0 0.0049 20 12 29 .. 1346 1363 .. 1343 1364 .. 0.92 2 ? 9.1 0.1 0.00033 1.4 42 81 .. 1357 1396 .. 1354 1407 .. 0.89 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0049 TTEEEEEEE-TTBSSEEE CS RVP 12 ggkyieallDtGAdatvi 29 +gk +e+l+Dt Ad++vi T230561_1 1346 SGKEFEGLVDTQADVSVI 1363 6899*************9 PP == domain 2 score: 9.1 bits; conditional E-value: 0.00033 EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEEST CS RVP 42 kaesllqGiggatetkqskaievllieekfrgevsplilp 81 +a++++ Gig+a+e++qs +i+++ + ++++++v+p+i++ T230561_1 1357 QADVSVIGIGTASEVYQSAMILHCPGSDNQESTVQPVITS 1396 78899*********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.72 # Mc/sec: 11645.96 // Query: T230561_2 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-69 234.3 1.5 1.6e-69 233.8 0.3 1.8 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 2.3e-27 94.5 0.2 4.5e-27 93.6 0.2 1.4 1 Gag_p10 Retroviral GAG p10 protein 9.4e-16 57.2 0.0 2.2e-15 56.0 0.0 1.6 1 RVT_thumb Reverse transcriptase thumb domain 4.2e-10 39.3 0.0 8e-10 38.4 0.0 1.5 1 dUTPase dUTPase 2.1e-06 26.8 1.2 4e-06 25.9 1.2 1.4 1 IN_DBD_C Integrase DNA binding domain 3.2e-06 26.8 2.5 9.2e-06 25.4 2.5 1.9 1 zf-CCHC Zinc knuckle 0.0013 18.2 0.1 0.0023 17.4 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 0.068 12.9 2.2 0.087 12.6 0.4 2.1 2 zf-CCHC_6 Zinc knuckle 0.13 11.8 1.1 0.28 10.8 1.1 1.5 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.8 0.3 8.7e-73 1.6e-69 1 205 [] 862 1075 .. 862 1075 .. 0.95 2 ? -1.8 0.0 1.1 2.1e+03 19 61 .. 2214 2257 .. 2208 2265 .. 0.82 Alignments for each domain: == domain 1 score: 233.8 bits; conditional E-value: 8.7e-73 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeq 90 +k+Lk++k++v+qyg +sp++++l+d++a++ +p+d+e+l+++ ++s+ l+ +++w+++++e+ +r n+a ++++i++d+llgtg+ ++++q T230561_2 862 MKMLKDIKEGVKQYGSNSPYIRTLLDSIAHGNrlTPYDWEILAKSslSSSQYLQfKTWWIDGVQEQ--VRKNQATkPTVNIDADQLLGTGPnwSTINQ 957 8******************************999**********976677778899**********..66666666***************99999** PP Gag_p24 91 sqlmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knst 184 + +mqn e++eqvr+++l+a+ ki+++g+ +++irQG+kEpy+dfvaRl++a++k+++d++a +v+v+ +ayeNANpeCq+++kpl+ ++ + T230561_2 958 QSVMQN-EAIEQVRAICLRAWGKIQDPGTAF-PINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPECQSAIKPLKgkvpAGVD 1053 ******.************************.9*********************************************************99987888 PP Gag_p24 185 l.edmlraCqgvggavhkarvl 205 + ++++aC+g+gga+hka+++ T230561_2 1054 ViTEYVKACDGIGGAMHKAMLM 1075 88******************98 PP == domain 2 score: -1.8 bits; conditional E-value: 1.1 Gag_p24 19 peviqlidalaeqalpkdlekllar.vgssqlaaqlwkeeleee 61 +++++++ +q ++ ++l+ + + ++++ +wk++ + T230561_2 2214 LYTLNVLNIYRNQTTTSAEQHLTGKrNSPHEGKLIWWKDNKNKT 2257 588999999999**9999999996547789999****9987766 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.6 0.2 2.5e-30 4.5e-27 3 84 .] 511 591 .. 509 591 .. 0.97 Alignments for each domain: == domain 1 score: 93.6 bits; conditional E-value: 2.5e-30 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G++ s+++l++++qt+e++cPWFpe+Gtldl++W+k+gkelk qa ++g+ ipl+v++ w++i++ L+ T230561_2 511 ASYLSFIKILLRRGGVRASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELK-QANREGKIIPLTVWNDWAIIKATLE 591 679*****************************************************.**********************985 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.0 0.0 1.2e-18 2.2e-15 22 65 .. 1709 1752 .. 1708 1753 .. 0.97 Alignments for each domain: == domain 1 score: 56.0 bits; conditional E-value: 1.2e-18 HHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 22 gdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 gdINWi p+lgi+t+ +++LF+ LrGds+l+s+r+LT+eA++++ T230561_2 1709 GDINWIWPTLGIPTYAMSNLFSFLRGDSELNSERTLTPEATKEI 1752 9****************************************997 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.4 0.0 4.4e-13 8e-10 6 127 .. 1208 1320 .. 1203 1322 .. 0.80 Alignments for each domain: == domain 1 score: 38.4 bits; conditional E-value: 4.4e-13 EBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEE..E-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 6 ptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalil..pRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + r++++s Dl++++ + + p + + +p +++ +lp+g ++ +RS+l++kg+ +++gvi sdy+G ++ l+ ++ + + + gdRiAqL+ T230561_2 1208 LSRATAGSTAVDLCSTQMVFLLPgKPPQKIPRGVYGPLPEG---RVGl*GRSSLNLKGVQIHTGVIYSDYKG--GIQLVISSTVPRSANPGDRIAQLL 1300 66788888888999999999888778889999999999874...555489**********************..6666667888999*********** PP EEEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 101 fariltaeleevetlkatergeggfgs 127 + ++++ +++++ +ggfgs T230561_2 1301 LLPYVK----IG---ENKKERTGGFGS 1320 **9999....33...345555666665 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 1.2 2.2e-09 4e-06 7 48 .. 2250 2290 .. 2246 2292 .. 0.91 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 2.2e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T230561_2 2250 WKDNKNKTWEM-GKVITWGRGFACVSPGENQLPVWIPTRHLK 2290 99999999984.79*************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 2.5 5.1e-09 9.2e-06 1 17 [. 1093 1109 .. 1093 1109 .. 0.96 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 5.1e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG++GH++r Cp T230561_2 1093 KKCYNCGQIGHLKRSCP 1109 59**************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.1 1.2e-06 0.0023 117 156 .. 1580 1620 .. 1575 1630 .. 0.78 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 1.2e-06 .......TEEEEESB--ST-TTHHHHHHH.HHHHHHTT-T. CS RVT_1 117 rvngeesegryekkglpqGsvlSPllfnl.fmnellrelrk 156 ++n++e+ +r+++k+lpqG+ +S ++++l ++n+l+ ++++ T230561_2 1580 SLNNKEPATRFQWKVLPQGMLNSSTICQLkLCNQLETSFQT 1620 568999**********************8456777766665 PP >> zf-CCHC_6 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.4 4.8e-05 0.087 3 20 .. 1094 1109 .. 1093 1124 .. 0.87 2 ? -3.2 0.1 4.2 7.5e+03 16 23 .. 2698 2705 .. 2696 2707 .. 0.85 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.8e-05 zf-CCHC_6 3 KCknCGAFGHtarskrCP 20 KC nCG +GH +rs CP T230561_2 1094 KCYNCGQIGHLKRS--CP 1109 9***********66..76 PP == domain 2 score: -3.2 bits; conditional E-value: 4.2 zf-CCHC_6 16 skrCPmKr 23 s +CP+K+ T230561_2 2698 SAFCPLKH 2705 779***97 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 1.1 0.00016 0.28 32 48 .. 1093 1109 .. 1091 1110 .. 0.92 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00016 zf-CCHC_4 32 rfCfiCgllGHsdkeCp 48 + C++Cg +GH ++ Cp T230561_2 1093 KKCYNCGQIGHLKRSCP 1109 67**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.66 # Mc/sec: 12704.69 // Query: T230561_3 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-25 87.1 0.0 2e-24 85.9 0.0 1.6 2 rve Integrase core domain 7.7e-19 67.0 7.6 7.7e-19 67.0 7.6 2.6 3 zf-CCHC_5 GAG-polyprotein viral zinc-finger 9.2e-15 54.2 2.7 2.2e-14 53.0 2.7 1.7 1 Integrase_Zn Integrase Zinc binding domain 3.2e-08 33.8 0.0 5.9e-08 32.9 0.0 1.4 1 RNase_H RNase H ------ inclusion threshold ------ 0.028 13.8 0.1 0.061 12.7 0.1 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 0.031 14.4 0.0 0.05 13.7 0.0 1.3 1 DDE_Tnp_IS240 DDE domain 0.067 13.0 1.1 0.25 11.2 1.1 2.0 1 zf-CCHC_3 Zinc knuckle Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.0 7 1.6e+04 23 60 .. 1954 1989 .. 1947 1992 .. 0.74 2 ! 85.9 0.0 8.7e-28 2e-24 4 118 .. 2082 2191 .. 2080 2192 .. 0.95 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 7 rve 23 kayllvviddfsrlilaeavsdemdastviallerava 60 ay+ ++ d r ++ ++++d+ ++ ll++ v+ T230561_3 1954 SAYVVQATKDIERALIKYIMDDQ--LNPLFNLLQQNVR 1989 58999999999999999999998..5556666666555 PP == domain 2 score: 85.9 bits; conditional E-value: 8.7e-28 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dv++++++++ ++++v +d++s++i+a + + e ++s+v + l + g pe+v +Dng+ y+ska+++fl++++i+++ ++ T230561_3 2082 PNVLWQMDVMHVPSFGKL--SFVHVTVDTYSHFIWATCQTGE-STSHVKRHLLSCFPVMGV--PEKVKTDNGPGYCSKAVQKFLNQWKITHTIGILYN 2174 999**********66555..**********************.9999*9999988888888..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q ++++Er+nrtlk++ T230561_3 2175 SQGQAIIERTNRTLKAQ 2191 ***************86 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.0 7.6 3.3e-22 7.7e-19 1 36 [] 1128 1163 .. 1128 1163 .. 0.97 2 ? -5.4 3.2 7 1.6e+04 4 13 .. 2355 2363 .. 2354 2365 .. 0.82 3 ? -7.5 4.3 7 1.6e+04 3 7 .. 2444 2448 .. 2443 2455 .. 0.70 Alignments for each domain: == domain 1 score: 67.0 bits; conditional E-value: 3.3e-22 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 p+glCp+C+k kHwa++Chskfdk+G+pLs+n++r+ T230561_3 1128 PSGLCPKCGKAKHWANQCHSKFDKDGQPLSGNRKRG 1163 79*******************************996 PP == domain 2 score: -5.4 bits; conditional E-value: 7 B-TTT-SSBS CS zf-CCHC_5 4 lCpRCkkgkH 13 lC+ C kg+H T230561_3 2355 LCL-CRKGRH 2363 677.****** PP == domain 3 score: -7.5 bits; conditional E-value: 7 -B-TT CS zf-CCHC_5 3 glCpR 7 +lCpR T230561_3 2444 NLCPR 2448 89**9 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.0 2.7 9.3e-18 2.2e-14 1 37 [. 2028 2064 .. 2028 2065 .. 0.99 Alignments for each domain: == domain 1 score: 53.0 bits; conditional E-value: 9.3e-18 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+e+H+l+H+Na +L++kF it++q ++IVq+C +Cq T230561_3 2028 AQELHALTHVNAIGLKNKFDITWKQTKNIVQHCTQCQ 2064 9***********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 0.0 2.5e-11 5.9e-08 60 141 .. 1944 2024 .. 1937 2026 .. 0.84 Alignments for each domain: == domain 1 score: 32.9 bits; conditional E-value: 2.5e-11 SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 60 sdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++++ni++DS Yvv+ +t++++r+ + + + + p+ n l++ + ++ ++++h+++H++ +k Ne+aD l+++a T230561_3 1944 FNQSINIVSDSAYVVQ-ATKDIERALIKYIMDDQLN-PLFN-LLQQNV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 2024 5789************.9999999977777666666.8999.777777..456888***********98888789*******9986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 2.6e-05 0.061 71 98 .. 1552 1579 .. 1547 1580 .. 0.94 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 2.6e-05 EEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvp 98 l+ +Dlk++F+++pl++++ +++af++p T230561_3 1552 LIIIDLKDCFFTIPLAKQDFEKFAFTTP 1579 678***********************99 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 2.1e-05 0.05 4 115 .. 2086 2197 .. 2083 2204 .. 0.91 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 2.1e-05 DDE_Tnp_IS240 4 wrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkyln 96 w++D v Gk +++ vD + + + + t +k+ l ++ + pe++ tD + y +a++++ ++ + ++ + + + T230561_3 2086 WQMDVMHVPSFGKLSFVHVTVDTYSHFIWATCQTGESTSHVKRHLLSCFPVM-GVPEKVKTDNGPGYcSKAVQKFLNQWKITHTIGILYNSQGQ 2178 888888888899****************************************.*********99999457*******99999******99999* PP DDE_Tnp_IS240 97 nriEsdhrtlKkrlrptrg 115 +iE+ +rtlK++l ++++ T230561_3 2179 AIIERTNRTLKAQLVKQKK 2197 ************9977665 PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 1.1 0.00011 0.25 2 22 .. 1127 1147 .. 1126 1161 .. 0.86 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00011 zf-CCHC_3 2 nasaaCQkClkkGHwtYECkn 22 + s +C kC+k Hw+ +C T230561_3 1127 KPSGLCPKCGKAKHWANQCHS 1147 56899**************84 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 14973.38 // Query: T039038_1 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 913 (0.0559917); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 3746.59 // Query: T039038_2 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 3675.90 // Query: T039038_3 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 17.4 2.0 0.73 9.7 0.0 2.3 2 DUF1664 Protein of unknown function (DUF1664) ------ inclusion threshold ------ 0.14 12.0 0.0 3.7 7.4 0.0 2.3 2 Laminin_II Laminin Domain II 0.58 9.4 7.9 0.9 8.7 7.9 1.2 1 APG6 Autophagy protein Apg6 1 8.0 6.5 1.5 7.5 2.6 1.9 2 Spc7 Spc7 kinetochore protein 2.1 8.4 27.9 3.9 7.6 10.0 2.5 2 FliJ Flagellar FliJ protein 2.6 7.9 6.7 15 5.4 3.3 2.3 2 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein 2.6 8.2 10.5 33 4.7 0.3 3.8 4 Retrotrans_gag Retrotransposon gag protein 3.4 7.5 18.1 9.5 6.1 4.6 2.5 2 Serine_rich Serine rich protein interaction domain 3.8 7.5 4.7 2.5 8.1 1.0 2.1 2 Fib_alpha Fibrinogen alpha/beta chain family 6.2 7.2 18.5 4.8 7.6 4.0 2.4 2 Snapin_Pallidin Snapin/Pallidin 7.7 4.4 7.2 11 3.9 7.2 1.1 1 EzrA Septation ring formation regulator, EzrA Domain annotation for each model (and alignments): >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.7 0.0 0.00049 0.73 49 121 .. 197 269 .. 190 272 .. 0.84 2 ! 7.3 0.5 0.0028 4.1 49 120 .. 274 345 .. 266 346 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00049 DUF1664 49 qleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 +l q ++l++ +hL q + ++ ++l + + + +++ +++++l ++++ ++++++ + +L ++l+++ T039038_3 197 RLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLH 269 4556666777777899999999999999999999999999999999999999999999999999999998875 PP == domain 2 score: 7.3 bits; conditional E-value: 0.0028 DUF1664 49 qleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 +l q ++l++ hL q++ ++ + l + + ++++ +++++++l ++++ + ++++ ++ L ++l+++ T039038_3 274 HLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHL 345 667777777777788888888888888888888888888888888888888888888888888888888776 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.0025 3.7 17 92 .. 193 265 .. 184 271 .. 0.84 2 ? 5.3 0.1 0.012 17 16 77 .. 248 309 .. 235 346 .. 0.55 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0025 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX CS Laminin_II 17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdni 92 + l+ l+q l+++++ l+++++ +++ +++++ + + + + +L + + L + l++l q+ + l + + T039038_3 193 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLH---LHQHL 265 56788999999999999999999999999999999999999999999999999999999999999888...55554 PP == domain 2 score: 5.3 bits; conditional E-value: 0.012 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 16 leqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklke 77 + l+ l+q l ++ + l+++++ ++ +++++ + + + + +L + + Ll+ l + T039038_3 248 HQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLH 309 34444455555555555555555545555555555555555555444444444444444444 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 7.9 0.00061 0.9 11 133 .. 195 329 .. 186 341 .. 0.57 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00061 APG6 11 leeldkeleelekerdayeeflkklekekkseek............eeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeee 98 l++l+++l++l+++ +++++l++l+ + ++ + ++ l +l++ l +l++ +l ++l +l++ ++l+++l++l+++l +l+++ + T039038_3 195 LHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQylhypyqdllhlHQHLYHLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLH 294 5667777777777777777777777777555555999995555555445555555555555555555555555555555555555555555555555544 PP APG6 99 eywrernalklelaeleeerdslkaqlehaqkqle 133 + + +l + l +l++ ++ l+++l h q++l T039038_3 295 HLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLL 329 44444444444444555555555555555555554 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 1.1 0.0068 10 153 232 .. 193 268 .. 187 270 .. 0.65 2 ? 7.5 2.6 0.001 1.5 143 237 .. 246 343 .. 237 346 .. 0.68 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0068 Spc7 153 edkelLekqeeeldellpeleeekaelekeleklqeaaeelesidkeeLeelreelaelkeeieekkkelaelqeeleel 232 + +L+++ + l++ l+ l++++ l++ l++l + ++ ++L l++ l l++ ++++ + l l + l +l T039038_3 193 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQ----YLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHL 268 344456666666666666666666666666666666....3346778888888888888888888888888777777665 PP == domain 2 score: 7.5 bits; conditional E-value: 0.001 Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaelekeleklqeaaeeles..id.keeLeelreelaelkeeieekkkelaelqeeleeleekie 237 l+++l l + +L+++ + l+e+ + l++++ l++ l +l + + l + + ++L l++ l l++ + ++++ l l + l +l + + T039038_3 246 HLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQylLHlLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLH 343 46777888888888888888888888888888888888888888887777776442235566666666666666666666666666666666666555 PP >> FliJ Flagellar FliJ protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 10.0 0.0027 3.9 5 80 .. 193 270 .. 190 279 .. 0.82 2 ? 5.6 11.3 0.011 16 4 79 .. 276 346 .. 273 346 .. 0.92 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0027 FliJ 5 reLaeaqrelqqaeekleeleqyrqeyqqqlsgea.q.glsaaelrnyqafisaldeaieqqqqelaqaekqvekare 80 ++L + +++l+ +++l l+qy+++++ l + + ++l ++++ + +l + + +q l ++++++++ e T039038_3 193 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYqYlHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLHE 270 678888999999999999999999999999988885578888999999999999999999999999999998888766 PP == domain 2 score: 5.6 bits; conditional E-value: 0.011 FliJ 4 areLaeaqrelqqaeekleeleqyrqeyqqqlsgeaqglsaaelrnyqafisaldeaieqqqqelaqaekqvekar 79 ++L + +++l ++l l qy+ ++ q l + + l+++++ + +l++ + +q l+++++++++ + T039038_3 276 HQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLH-----QPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHLQ 346 58899999********************99999999.....****************************9998865 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.1 0.052 77 59 88 .. 193 222 .. 188 233 .. 0.50 2 ? 5.4 3.3 0.01 15 6 109 .. 238 341 .. 234 346 .. 0.81 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.052 CENP-F_leu_zip 59 eeieelaeelreleldLvalrsekeeLeke 88 +++++l ++l +l++ L +lr+ +L+ + T039038_3 193 QNLHRLHQHLDHLNQHLHHLRQYLHHLHHH 222 444444444444444444444444444333 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 CENP-F_leu_zip 6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe 100 lh+ + L ++ +L+++ + L + l + e ++ + + + l++++++l + l +l + L +l + +L+++l + q+ L T039038_3 238 LHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLH 332 67778888888888899999999999999999999999999999999999999999999999999999999999999999998888888887777 PP CENP-F_leu_zip 101 slnsslenl 109 + l++ T039038_3 333 QYLHRLHQH 341 766665555 PP >> Retrotrans_gag Retrotransposon gag protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.2 0.051 76 47 72 .. 196 221 .. 189 236 .. 0.78 2 ? 4.0 0.7 0.039 57 44 83 .. 249 288 .. 231 300 .. 0.77 3 ? 1.4 0.1 0.25 3.7e+02 45 75 .. 278 308 .. 273 315 .. 0.77 4 ? 4.7 0.3 0.022 33 47 75 .. 315 343 .. 307 346 .. 0.86 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.051 Retrotrans_gag 47 dqleeelrslrQgtesvreYverfkt 72 ++l+++l +l+Q+ ++r+Y++ +++ T039038_3 196 HRLHQHLDHLNQHLHHLRQYLHHLHH 221 57888999999999999999887765 PP == domain 2 score: 4.0 bits; conditional E-value: 0.039 Retrotrans_gag 44 erkdqleeelrslrQgtesvreYverfktladqldeevlt 83 ++ ++l+++l +l Q+ +++eY + +++ ++ l+++ l+ T039038_3 249 QHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLH 288 6778899999999999999999999998887777766555 PP == domain 3 score: 1.4 bits; conditional E-value: 0.25 Retrotrans_gag 45 rkdqleeelrslrQgtesvreYverfktlad 75 + ++l+++l +l Q+ ++++Y+ + +++ T039038_3 278 NLHHLHQHLLHLHQHLHHLHQYLLHLLQYLL 308 5568899999999999999999887766655 PP == domain 4 score: 4.7 bits; conditional E-value: 0.022 Retrotrans_gag 47 dqleeelrslrQgtesvreYverfktlad 75 ++l+++l +l+Q+ ++++Y++r+++ ++ T039038_3 315 HHLHQHLLHLQQHLLHLHQYLHRLHQHLH 343 57899******************988665 PP >> Serine_rich Serine rich protein interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 4.6 0.0064 9.5 33 103 .. 200 265 .. 188 271 .. 0.51 2 ? 5.4 11.3 0.01 15 12 103 .. 246 342 .. 242 346 .. 0.54 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0064 Serine_rich 33 RsrenleanlqeirlavdrlraslrefleFargalanaaklsdknlqtkLrkqlqkledseqilqetsqaL 103 ++ ++l+++l+++r+ +++l+ l+++ ++ + + + l+++L ++ q l+ +q l + +q+L T039038_3 200 QHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLH-----LHQHLYHLHQHLHHLHQHLLHLHQHL 265 3344555555555555555555555555555555555555.....55555555555555555555554444 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 Serine_rich 12 rlqqevesavskLlsfv...sskWRsrenleanlqeirlavdrlraslrefleFargalanaaklsd..knlqtkLrkqlqkledseqilqetsqaL 103 +l q++++ ++Ll++ ++ +++l++nl+++++++ +l++ l+++ ++ l +l++ ++l+++L ++ q l +q l++ +q+L T039038_3 246 HLHQHLHHLHQHLLHLHqhlHHLHEYPHHLHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQplHHLHQHLLHLQQHLLHLHQYLHRLHQHL 342 3333333333333333210033333455666666666666666666666666666666666666666666666666666666666666666666665 PP >> Fib_alpha Fibrinogen alpha/beta chain family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 1.0 0.0017 2.5 25 129 .. 190 290 .. 177 299 .. 0.69 2 ? 3.6 2.2 0.043 64 33 125 .. 247 342 .. 235 346 .. 0.58 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0017 CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS Fib_alpha 25 lllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124 +l + + ++++l++l+++l+++++ ++ +++ ++++++l+ + + + + +++++l l++ + + ++++ L + ++++q++++L q+ T039038_3 190 VLHQNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHL----HHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQH 285 56777788899999999999999999999999999999998877776665444444444444....4666777766677777777777777777777666 PP HHHHH CS Fib_alpha 125 idqke 129 + T039038_3 286 LLHLH 290 55544 PP == domain 2 score: 3.6 bits; conditional E-value: 0.043 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH CS Fib_alpha 33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdi 125 ++++l++l+++l ++++ ++ +e+ +++++ l++ ++ + + ++++ +l + l l++ + + +++ Lq+ l +++q +++L q+ T039038_3 247 LHQHLHHLHQHLLHLHQHLHHLHEYPHHLHQNLHHLHQHLLHLhqhLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHL 342 455666666666666666666666666666655443333332211144455555555556666777777777777777777777777777777765 PP >> Snapin_Pallidin Snapin/Pallidin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 4.0 0.0032 4.8 9 89 .] 189 269 .. 186 270 .. 0.85 2 ? 5.2 6.7 0.018 27 18 89 .] 275 346 .. 272 346 .. 0.92 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0032 Snapin_Pallidin 9 ellepkldeldeklkelrqsQeeLleqidrlneeLkelseaqeevlpdlkeyakKLvnikkrmsslnerlqklqkRaekLq 89 +l+ l++l+++l l q+ +L++ ++ l++ L++l + + +dl + ++ L + ++++ l++ l +l++ + +L+ T039038_3 189 LVLHQNLHRLHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLHQHLLHLHQHLHHLH 269 578888999999999999999999999999999999999988856778889999999999999999999999999888875 PP == domain 2 score: 5.2 bits; conditional E-value: 0.018 Snapin_Pallidin 18 ldeklkelrqsQeeLleqidrlneeLkelseaqeevlpdlkeyakKLvnikkrmsslnerlqklqkRaekLq 89 l+++l+ l q+ +L+++++ l++ L +l + + + l++ ++ L +++++ l++ l++l++ + +Lq T039038_3 275 LHQNLHHLHQHLLHLHQHLHHLHQYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRLHQHLHHLQ 346 6789999999999*************9999988889999***************************999986 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 7.2 0.0075 11 192 325 .. 198 338 .. 189 375 .. 0.39 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.0075 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHSTTS--SGGGS.....SSSSHHHHHHHHHHHHHHHHTT-..-HHHHHHHHHHHH CS EzrA 192 akeilkkleeeideleevieeiPelleelkkelpkqleelkegykkmkeegYaleel.....niekeieelekkieeilerlkel..eledaeeelktie 284 +++l+ l++++++l+++++++ l+ l + l ++l + ++ + + +l +l ++ + +++l++ +++ ++l+ l +l + ++ l++++ T039038_3 198 LHQHLDHLNQHLHHLRQYLHHLHHHLHHLYQYLHYPYQDLLHLHQHLYHLHQHLHHLhqhllHLHQHLHHLHEYPHHLHQNLHHLhqHLLHLHQHLHHLH 297 2333333333333333333333333333333333333333333333333333333321111122333333333333333333333212333333333333 PP HHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTT CS EzrA 285 eeidsLyddlekEveAkkeveknlkelkeklehlekqnkel 325 +++ +L + l + + ++ +++l l+++l hl + ++ l T039038_3 298 QYLLHLLQYLLHLHQPLHHLHQHLLHLQQHLLHLHQYLHRL 338 33333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 992 (0.0608365); expected 326.1 (0.02) Passed bias filter: 350 (0.0214645); expected 326.1 (0.02) Passed Vit filter: 98 (0.00601006); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 3412.92 // Query: T363067_1 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 860 (0.0527413); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 2899.34 // Query: T363067_2 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 650 (0.0398626); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 2899.34 // Query: T363067_3 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 707 (0.0433583); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 2844.64 // Query: T018762_1 [L=6065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-13 49.4 0.4 1.6e-12 47.3 0.1 1.9 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.034 5.6e+02 39 55 .. 1428 1444 .. 1423 1451 .. 0.87 2 ! 47.3 0.1 9.9e-17 1.6e-12 102 175 .. 1477 1550 .. 1469 1559 .. 0.92 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.034 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 +k++ fk ftkkmd+ T018762_1 1428 KSKIDGFKCFTKKMDNR 1444 579************96 PP == domain 2 score: 47.3 bits; conditional E-value: 9.9e-17 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++ + ++e+fa q++kDl++ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018762_1 1477 ELDQAIHFSIDASHSVSELFASQSRKDLDPAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 1550 789999999***********************************************************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.57 # Mc/sec: 29915.40 // Query: T018762_2 [L=6065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-16 60.3 0.9 1.4e-08 34.4 0.3 2.3 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 0.0 1.2e-09 1.9e-05 2 29 .. 1390 1417 .. 1389 1419 .. 0.91 2 ! 34.4 0.3 8.6e-13 1.4e-08 185 228 .. 1559 1602 .. 1544 1608 .. 0.93 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 1.2e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018762_2 1390 EIAWRQGKRKAEKDEMVSARFFLALSPP 1417 679**********************975 PP == domain 2 score: 34.4 bits; conditional E-value: 8.6e-13 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018762_2 1559 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 1602 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.59 # Mc/sec: 29408.36 // Query: T018762_3 [L=6065] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6065 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.31s 00:00:01.63 Elapsed: 00:00:00.56 # Mc/sec: 30440.24 // Query: T368017_1 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.46 # Mc/sec: 7152.07 // Query: T368017_2 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.48 # Mc/sec: 6854.07 // Query: T368017_3 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.47 # Mc/sec: 6999.90 // Query: T246631_1 [L=188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.47 # Mc/sec: 1144.33 // Query: T246631_2 [L=188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 77 (0.00472219); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.45 # Mc/sec: 1195.19 // Query: T246631_3 [L=188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-05 25.3 1.2 2.8e-05 23.9 0.7 1.7 2 Ferritin Ferritin-like domain Domain annotation for each model (and alignments): >> Ferritin Ferritin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.8 0.0 0.0029 47 3 29 .. 22 48 .. 21 49 .. 0.94 2 ! 23.9 0.7 1.7e-09 2.8e-05 75 140 .. 44 109 .. 32 111 .. 0.90 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0029 HHHHHHHHHHHHHHHHHHHHHHHHSTT CS Ferritin 3 aLneqladeltaayqylamawyvkgpg 29 a+n+ + el+ + yl+m +++++g T246631_3 22 AINRVASYELHISDAYLSMRPNIDNWG 48 689999******************997 PP == domain 2 score: 23.9 bits; conditional E-value: 1.7e-09 SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Ferritin 75 pkefgsveevleaalehekkvteslrelielaeeegDpatadfledfleeqeeheweleallekle 140 +++g+ +++l+ a+++e+++t+ l++l a + ++ df ++f++ q ++++le + + le T246631_3 44 IDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLE 109 345*******************************************************99877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 514 (0.0315221); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1144.33 // Query: T237728_1 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-94 314.0 0.7 3e-94 313.3 0.7 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 3.7e-10 39.8 0.1 5.9e-10 39.2 0.1 1.2 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 313.3 0.7 3.7e-98 3e-94 19 169 .] 1039 1189 .. 1030 1189 .. 0.97 Alignments for each domain: == domain 1 score: 313.3 bits; conditional E-value: 3.7e-98 HERV-K_env_2 19 vpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqdfsyqrslkfrpkgkpc 113 vpgp+ddrcpakpeeeg+minis gyryppiclgrapgclmpavqnwl+evptvspisrftyh vs mslrprvn lqdfsyqrslkfrpkgkpc T237728_1 1039 VPGPTDDRCPAKPEEEGIMINISTGYRYPPICLGRAPGCLMPAVQNWLLEVPTVSPISRFTYHTVSRMSLRPRVNNLQDFSYQRSLKFRPKGKPC 1133 9********************************************************************************************** PP HERV-K_env_2 114 pkeipkeskntevlvweecvansavilqnnefgtiidwap.rgqfyhncsgqtqscp 169 pk+ipk sknte lvweecvansavilqnnefgtiidwap qfyhncsgqtqscp T237728_1 1134 PKKIPKGSKNTEALVWEECVANSAVILQNNEFGTIIDWAP*G-QFYHNCSGQTQSCP 1189 **************************************9555.9************9 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.2 0.1 7.2e-14 5.9e-10 1 79 [. 1391 1469 .. 1391 1486 .. 0.94 Alignments for each domain: == domain 1 score: 39.2 bits; conditional E-value: 7.2e-14 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXX CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvp 79 va v+l +vq+ ++vn+ +kn ++ + Q id+kl +++n + v+ +G+ ++sl+++ +l+C n C+T+ T237728_1 1391 VAGVALHSSVQSVNFVNDWQKNATRLWNSQSGIDQKLANQINDFRQTVIWMGDRLMSLEHRFQLQCDWNMSDFCITPQV 1469 6789************************************************************************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 10853.99 // Query: T237728_2 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-74 247.6 0.2 1.3e-73 247.2 0.2 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 4.9e-20 70.8 5.6 4.9e-20 70.8 5.6 2.8 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 1.7e-19 69.6 0.0 2.7e-19 69.0 0.0 1.3 1 dUTPase dUTPase 5.3e-06 26.1 3.8 5.3e-06 26.1 3.8 2.8 2 zf-CCHC Zinc knuckle 7.5e-05 22.8 0.0 0.00035 20.7 0.0 2.1 2 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 1.3 9.0 5.5 9.7 6.1 0.3 2.6 2 zf-CCHC_3 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 247.2 0.2 4.6e-77 1.3e-73 1 205 [] 286 499 .. 286 499 .. 0.98 Alignments for each domain: == domain 1 score: 247.2 bits; conditional E-value: 4.6e-77 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++++qygp+sp++++l+d++a+++ +p+d+e+l+++ ++s++l+ + +w+++ +e+ +r nraa +p++i++d+llgtgq ++++q++ T237728_2 286 IKMLKDMKEGIKQYGPNSPYMRTLLDSIAHGHrlIPYDWEILAKSslSPSQFLQfKIWWINGAQEQ--VRKNRAAnPPVNIDADQLLGTGQnwSTISQQA 383 79******************************************9889******999*********..99999999***************999****** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knstl.ed 187 lmqn e++eqvr+++l+a+eki+++g+ ++s+++ rQG+kEpy+dfvaRl+++++k++ade+a +v+v+ +ayeNANpeCq+++kpl+ ++s++ ++ T237728_2 384 LMQN-EAIEQVRAICLRAWEKIQDPGTACPSFNT-RQGSKEPYPDFVARLQDVAQKSIADENARKVIVELMAYENANPECQSAIKPLKgkfpAGSDViSE 481 ****.************************99987.******************************************************9*999**99** PP Gag_p24 188 mlraCqgvggavhkarvl 205 +++aC+g+gga+hka+++ T237728_2 482 YVKACDGIGGAMHKAMLM 499 ****************98 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 1.9 0.044 1.2e+02 3 20 .. 517 534 .. 516 539 .. 0.90 2 ! 70.8 5.6 1.8e-23 4.9e-20 1 36 [] 552 587 .. 552 587 .. 0.98 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.044 -B-TTT-SSBS-TTT--- CS zf-CCHC_5 3 glCpRCkkgkHwardChs 20 g C C++ H +++C + T237728_2 517 GKCYNCGQSGHLKKNCPA 534 79**************76 PP == domain 2 score: 70.8 bits; conditional E-value: 1.8e-23 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 pp+lCpRC kgkHwa++C+skfd nG+pLs+ne+r+ T237728_2 552 PPDLCPRCQKGKHWASQCRSKFDRNGQPLSGNEQRG 587 8*********************************96 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.0 0.0 1e-22 2.7e-19 5 106 .. 631 731 .. 627 747 .. 0.87 Alignments for each domain: == domain 1 score: 69.0 bits; conditional E-value: 1e-22 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 + +++++sA Dl+ + + + p + + +pt+++ +lp+g+ +lil+RS+l++kg+ +++gv+dsdy+Ge+++v+ ++ + + gdRiAqL++ + T237728_2 631 QLSPATSGSAAVDLCTIQAVSLLPgEPPQKIPTGVYGPLPEGTVGLILGRSSLNRKGVQIHTGVVDSDYKGEIQLVIS--SSIPWSASPGDRIAQLLLLP 728 57899*******************7789*******************************************7777775..56689*************98 PP BEC CS dUTPase 104 ilt 106 + + T237728_2 729 YIK 731 876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 3.8 1.9e-09 5.3e-06 1 17 [. 517 533 .. 517 534 .. 0.95 2 ? 2.2 1.2 0.071 1.9e+02 3 17 .. 556 570 .. 554 571 .. 0.84 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 1.9e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG+ GH++++Cp T237728_2 517 GKCYNCGQSGHLKKNCP 533 59**************9 PP == domain 2 score: 2.2 bits; conditional E-value: 0.071 TSSSSSSSSTTTTST CS zf-CCHC 3 CynCGepGHiardCp 17 C +C++ H+a++C T237728_2 556 CPRCQKGKHWASQCR 570 66888889******7 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 1.8 4.8e+03 83 101 .] 673 691 .. 665 691 .. 0.79 2 ! 20.7 0.0 1.3e-07 0.00035 2 27 .. 761 786 .. 760 791 .. 0.94 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 1.8 SSSEEE-HHHHCCCT-EEE CS RVP 83 lpvnllGrdlLqklgvrLt 101 + +lGr+ L+ gv+++ T237728_2 673 TVGLILGRSSLNRKGVQIH 691 44559********999986 PP == domain 2 score: 20.7 bits; conditional E-value: 1.3e-07 SSSSEEEEEETTEEEEEEE-TTBSSE CS RVP 2 eqrPllkvkiggkyieallDtGAdat 27 e+rP++k +i+gk++e+l+DtGAd++ T237728_2 761 ENRPVCKSIIQGKQFEGLVDTGADVS 786 79**********************87 PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.9 0.014 39 6 26 .. 518 536 .. 515 546 .. 0.81 2 ? 6.1 0.3 0.0036 9.7 6 22 .. 555 571 .. 551 584 .. 0.87 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.014 zf-CCHC_3 6 aCQkClkkGHwtYECknager 26 C +C++ GH+ C++ ++ T237728_2 518 KCYNCGQSGHLKKNCPA--SN 536 699********999994..33 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0036 zf-CCHC_3 6 aCQkClkkGHwtYECkn 22 +C +C k Hw+ +C+ T237728_2 555 LCPRCQKGKHWASQCRS 571 799************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 10641.17 // Query: T237728_3 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-09 38.0 0.0 2.4e-09 37.3 0.0 1.3 1 rve Integrase core domain 1.5e-07 31.5 0.0 2.9e-07 30.6 0.0 1.4 1 RVP Retroviral aspartyl protease 6.1e-06 25.3 1.7 1.3e-05 24.3 1.7 1.5 1 IN_DBD_C Integrase DNA binding domain 2.8e-05 23.8 1.0 4.4e-05 23.2 1.0 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.0 6e-13 2.4e-09 35 118 .. 819 900 .. 810 901 .. 0.87 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 6e-13 rve 35 rlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelg..irvsftrpgrpqdnGkvErfnrtlkde 118 r +++ ++++++s+v + l +a g + e++ +Dng+ y+skaf++fl+ + i++++ p+++q +++vE++nrtlk++ T237728_3 819 RILHCLGPDNQESTSHVKKHLLSYFAVMGVR--EKIKTDNGPGYCSKAFQRFLN--Q*kISHTTGIPYNSQGQAIVESTNRTLKTQ 900 5566666677789999999999999999985..8******************75..566*************************86 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.0 7e-11 2.9e-07 25 75 .. 783 833 .. 782 847 .. 0.90 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 7e-11 SSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE.. CS RVP 25 datviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgev 75 ++++i+ +++P+nwp++ka + l G+g+a+e++qs+ i+++l+ ++++++ T237728_3 783 QMSLIALNQWPKNWPKQKAVTGLVGVGTASEVYQSTRILHCLGPDNQESTS 833 5799***************************************99998844 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 1.7 3.1e-09 1.3e-05 7 48 .. 960 1000 .. 956 1002 .. 0.90 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 3.1e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v ++grG +cv P +++ ++w+P R ++ T237728_3 960 WKDNKNKTWEI-GKVVTWGRGFACVSPGENQLPVWIPTRHLK 1000 99999999983.699************************998 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 1.0 1.1e-08 4.4e-05 1 22 [. 1020 1041 .. 1020 1043 .. 0.89 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.1e-08 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgp 22 +vtwmdnpievyvndsvw p T237728_3 1020 PVTWMDNPIEVYVNDSVWGTWP 1041 69****************7655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.81u 0.24s 00:00:01.05 Elapsed: 00:00:00.50 # Mc/sec: 10853.99 // Query: T362260_1 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 14.3 2.0 0.099 12.7 1.1 2.1 2 Furin-like_2 Furin-like repeat, cysteine-rich Domain annotation for each model (and alignments): >> Furin-like_2 Furin-like repeat, cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 1.1 6.1e-06 0.099 32 85 .. 170 221 .. 158 240 .. 0.72 2 ? -0.9 0.0 0.1 1.7e+03 14 48 .. 449 483 .. 439 523 .. 0.73 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.1e-06 Furin-like_2 32 iGvclkscpaGyfgvrnkevnrctkckieecescfskdfctkckegfylhkGkc 85 + + +s p+G++ ++ +n c+ c + c ++++ct ++ ++ + + T362260_1 170 YTTHTHSIPHGHYMHATHTTNTCHSCTT--HTPCTTRTLCTSHTHHTHKLHTHH 221 556689********************99..57899*****97655444333222 PP == domain 2 score: -0.9 bits; conditional E-value: 0.1 Furin-like_2 14 lkckkklfllleregirqiGvclkscpaGyfgvrn 48 l+ +kl + + + ++ + +c ++ + y + + T362260_1 449 LRAAHKLHTHYTHNTVHTHTHCKHTTHTNYIHTTH 483 66677777888888888888888877777765544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1098 (0.0673372); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4075.22 // Query: T362260_2 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1565 (0.0959769); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 3767.66 // Query: T362260_3 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1068 (0.0654974); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 3915.41 // Query: T330817_1 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00054 20.3 7.7 0.87 9.9 4.4 3.6 2 Fez1 Fez1 0.0095 16.2 9.7 4.4 7.5 0.2 4.5 6 HrpB7 Bacterial type III secretion protein (HrpB7) ------ inclusion threshold ------ 0.11 12.5 6.1 0.85 9.6 0.4 2.5 3 ATG16 Autophagy protein 16 (ATG16) 0.46 10.8 29.9 0.54 10.6 1.4 6.4 6 FlaC_arch Flagella accessory protein C (FlaC) 4.3 7.2 12.2 0.38 10.6 1.8 3.1 4 DUF1664 Protein of unknown function (DUF1664) Domain annotation for each model (and alignments): >> Fez1 Fez1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.6 0.2 0.0014 4.4 44 99 .. 150 205 .. 146 244 .. 0.53 2 ! 9.9 4.4 0.00027 0.87 22 112 .. 275 365 .. 219 505 .. 0.74 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0014 Fez1 44 rakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkel 99 +a++e+ e+e+ +++++ + ++e+ ++e+e+ +++e+ +++ +v+ +e+e+ + T330817_1 150 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMI 205 34444444444444444444444444444444444444444444444444444333 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00027 Fez1 22 sqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeee 112 aev+ + +e+ + a++ ++a++ +e+ei +e+++ ++e+ +e+e+ +++e+ l + +++ +e+e+ + e+ ++++e T330817_1 275 REAEVAMREEEVGLMEAEVGMMEAEVGMREAEIGMMEAEVGLMEAEVGMMEAEVGMREEEVGLREAEIGMMEAEVGMMEAEVGMMEAEVGL 365 5677777777777777777777777777777777777777777777777777777777777777777777777777777766665433222 PP >> HrpB7 Bacterial type III secretion protein (HrpB7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.1 0.0034 11 74 123 .. 153 202 .. 147 223 .. 0.58 2 ? 1.2 0.2 0.12 4e+02 86 126 .. 263 303 .. 244 313 .. 0.54 3 ? 3.9 0.3 0.018 58 84 127 .. 282 325 .. 273 335 .. 0.75 4 ! 7.5 0.2 0.0014 4.4 82 134 .. 308 360 .. 303 362 .. 0.88 5 ! 6.4 0.1 0.0031 10 81 130 .. 349 398 .. 341 418 .. 0.76 6 ? -0.5 0.0 0.39 1.3e+03 83 115 .. 449 481 .. 440 484 .. 0.82 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0034 HrpB7 74 ylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqi 123 + +++a +++++++v+ +eae+ ++++ e++v +++++ ++a++ T330817_1 153 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEV 202 33444445555555555555555555555555555555555555555555 PP == domain 2 score: 1.2 bits; conditional E-value: 0.12 HrpB7 86 grvraaeaelaaarqaldaaedavaatarkiaRndaqidac 126 g+v+ e e+ +++++ +e++v +++++ ++a++ T330817_1 263 GEVGMREGEVGMREAEVAMREEEVGLMEAEVGMMEAEVGMR 303 44444444444444444444444444444444444444444 PP == domain 3 score: 3.9 bits; conditional E-value: 0.018 HrpB7 84 legrvraaeaelaaarqaldaaedavaatarkiaRndaqidacr 127 e++v+ +eae+ ++++ +e+++ +++++ ++a++ ++ T330817_1 282 REEEVGLMEAEVGMMEAEVGMREAEIGMMEAEVGLMEAEVGMME 325 46788888888888888888888888888888888888776555 PP == domain 4 score: 7.5 bits; conditional E-value: 0.0014 HrpB7 82 dvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlr 134 +++e++v+ +eae+ ++++ +e++v ++++i+ ++a++ +++ + ++ T330817_1 308 GMMEAEVGLMEAEVGMMEAEVGMREEEVGLREAEIGMMEAEVGMMEAEVGMME 360 678999**********************************9998888777665 PP == domain 5 score: 6.4 bits; conditional E-value: 0.0031 HrpB7 81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacreri 130 ++++e++v+ +eae+ ++++ +e++v ++++i+ ++a + +++ + T330817_1 349 VGMMEAEVGMMEAEVGLMEAEVGMREAEVGMREAEIGMMEAGVGMMEAEV 398 56677888888888888888888888888888888888887776666555 PP == domain 6 score: -0.5 bits; conditional E-value: 0.39 HrpB7 83 vlegrvraaeaelaaarqaldaaedavaatark 115 + e++v+ +eae+ ++++ +e++v +++ T330817_1 449 MREEEVGLMEAEVGMMEAEVGMREEEVGMWKQR 481 557899999999999999999999999877776 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.2 0.0047 15 118 176 .. 150 208 .. 146 222 .. 0.40 2 ? 9.6 0.4 0.00026 0.85 101 183 .. 287 369 .. 268 371 .. 0.90 3 ? -3.4 0.0 2.6 8.6e+03 123 149 .. 449 475 .. 439 480 .. 0.70 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0047 ATG16 118 eeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEek 176 e++++++e+++ ++ae+ ++e+++ e+e+ e+ v ++ E+ +++++ ++E + T330817_1 150 EAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIEVE 208 33333333333333333333333333333333333333333333333333333333333 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00026 ATG16 101 gelaqrllelneelqkleeklkedeerlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklrklekE 183 g ++ ++ +++e+ +e+++ +e+++ +eae+ +e+++ reee+ +e+ + ++ E+ +++++ ++E++ +e+E T330817_1 287 GLMEAEVGMMEAEVGMREAEIGMMEAEVGLMEAEVGMMEAEVGMREEEVGLREAEIGMMEAEVGMMEAEVGMMEAEVGLMEAE 369 5677888899****************************************************************998777766 PP == domain 3 score: -3.4 bits; conditional E-value: 2.6 ATG16 123 edeerlaeleaeraaleeklkdreeel 149 +ee++ +eae+ +e+++ reee+ T330817_1 449 MREEEVGLMEAEVGMMEAEVGMREEEV 475 566777777777777888777777776 PP >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.4 0.00016 0.54 2 38 .. 153 189 .. 147 191 .. 0.84 2 ? 10.4 1.3 0.00019 0.61 5 39 .. 170 204 .. 167 215 .. 0.56 3 ? 5.0 1.1 0.0089 29 3 37 .. 294 328 .. 283 335 .. 0.74 4 ? 3.1 1.9 0.035 1.2e+02 13 37 .. 339 363 .. 315 377 .. 0.60 5 ? 3.6 0.3 0.025 82 5 40 .. 366 401 .. 362 419 .. 0.65 6 ? 0.7 0.4 0.19 6.3e+02 6 32 .. 451 477 .. 437 483 .. 0.64 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00016 FlaC_arch 2 idelEnklsklsteletvkkeneelsksveeleenVk 38 i+++E +++ ++ e++t+++e ++ +v ++e +V T330817_1 153 IETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVG 189 6889999999999999999999999999999988885 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00019 FlaC_arch 5 lEnklsklsteletvkkeneelsksveeleenVkd 39 +E +++ ++ e++++++e ++ +v ++e +V + T330817_1 170 MEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGM 204 55555555555555555555555555555555532 PP == domain 3 score: 5.0 bits; conditional E-value: 0.0089 FlaC_arch 3 delEnklsklsteletvkkeneelsksveeleenV 37 + +E +++ + e++++++e ++ +v ++e +V T330817_1 294 GMMEAEVGMREAEIGMMEAEVGLMEAEVGMMEAEV 328 45677777777777777777777777777777766 PP == domain 4 score: 3.1 bits; conditional E-value: 0.035 FlaC_arch 13 steletvkkeneelsksveeleenV 37 + e++++++e ++ +v ++e +V T330817_1 339 EAEIGMMEAEVGMMEAEVGMMEAEV 363 4444444444444444444444433 PP == domain 5 score: 3.6 bits; conditional E-value: 0.025 FlaC_arch 5 lEnklsklsteletvkkeneelsksveeleenVkdl 40 +E +++ + e+++ ++e+ ++ v ++e +V ++ T330817_1 366 MEAEVGMREAEVGMREAEIGMMEAGVGMMEAEVGMV 401 566666666666666666666666666666655443 PP == domain 6 score: 0.7 bits; conditional E-value: 0.19 FlaC_arch 6 Enklsklsteletvkkeneelsksvee 32 E++++ ++ e++++++e +++v + T330817_1 451 EEEVGLMEAEVGMMEAEVGMREEEVGM 477 566666666666666666555555555 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.8 0.00012 0.38 64 121 .. 149 206 .. 146 208 .. 0.70 2 ? 0.2 0.2 0.2 6.5e+02 82 121 .. 286 325 .. 275 328 .. 0.69 3 ? 1.2 0.5 0.098 3.2e+02 79 121 .. 318 360 .. 303 375 .. 0.49 4 ? 0.4 0.3 0.17 5.5e+02 66 108 .. 347 389 .. 331 405 .. 0.49 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00012 DUF1664 64 LsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleeie 121 ++++i+++++++ +k+ +++ev +++ ++ ++ +v +++ v +e+ + ie T330817_1 149 MEAEIETMEAEVGMMKAEVGTMEAEVGTMEAEVGMMEAEVGMMEAEVGMMEAEVGMIE 206 5667777777777777777777777777777777777777777777777777777766 PP == domain 2 score: 0.2 bits; conditional E-value: 0.2 DUF1664 82 skeikeevtevredlseikedvesvkeavegLeskleeie 121 +++ev ++ ++ + ++ +++ v +e+ + +e T330817_1 286 VGLMEAEVGMMEAEVGMREAEIGMMEAEVGLMEAEVGMME 325 4556777777777777777777777777777777777766 PP == domain 3 score: 1.2 bits; conditional E-value: 0.098 DUF1664 79 keiskeikeevtevredlseikedvesvkeavegLeskleeie 121 ++ +++ev +e++ + ++ +++ v +e+ + +e T330817_1 318 EAEVGMMEAEVGMREEEVGLREAEIGMMEAEVGMMEAEVGMME 360 3444444444444444444444444444444444444444443 PP == domain 4 score: 0.4 bits; conditional E-value: 0.17 DUF1664 66 qridrvdkkldeqkeiskeikeevtevredlseikedvesvke 108 +++ +++++ +++ +++ev + ++ + ++ +++ T330817_1 347 AEVGMMEAEVGMMEAEVGLMEAEVGMREAEVGMREAEIGMMEA 389 3333333334444444444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 4711.96 // Query: T330817_2 [L=839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.36 11.1 23.8 0.69 10.2 0.7 5.1 5 FlaC_arch Flagella accessory protein C (FlaC) Domain annotation for each model (and alignments): >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 2.9 0.054 8.7e+02 6 32 .. 541 567 .. 484 572 .. 0.70 2 ? 4.4 4.8 0.0029 47 8 37 .. 557 586 .. 543 607 .. 0.56 3 ? 1.1 0.4 0.03 4.8e+02 5 37 .. 589 621 .. 585 623 .. 0.63 4 ? 10.2 0.7 4.2e-05 0.69 5 35 .. 645 675 .. 634 687 .. 0.51 5 ? 6.5 0.5 0.0006 9.7 3 37 .. 678 712 .. 676 722 .. 0.88 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.054 FlaC_arch 6 Enklsklsteletvkkeneelsksvee 32 E +++ ++ e+++ ++e ++ +v + T330817_2 541 EAEIGMMEAEVGMREEEVGMMEAEVGM 567 344444444444444444444444444 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0029 FlaC_arch 8 klsklsteletvkkeneelsksveeleenV 37 +++ ++ e++++++e ++ +v ++e +V T330817_2 557 EVGMMEAEVGMMEAEVGMMEAEVGMMEAEV 586 444444444444444444444444444443 PP == domain 3 score: 1.1 bits; conditional E-value: 0.03 FlaC_arch 5 lEnklsklsteletvkkeneelsksveeleenV 37 +E ++ ++ e++ +++e + +v ++e +V T330817_2 589 MEAEVVMMEAEVGLMEAEVGMREAEVGMIEAEV 621 566666666666666666666666666666555 PP == domain 4 score: 10.2 bits; conditional E-value: 4.2e-05 FlaC_arch 5 lEnklsklsteletvkkeneelsksveelee 35 +E +++ ++ e++++++e ++ +v ++e T330817_2 645 VEAEVGMVEAEVGMMEAEVGMMEAEVGMMEA 675 4444444444444444444444444444444 PP == domain 5 score: 6.5 bits; conditional E-value: 0.0006 FlaC_arch 3 delEnklsklsteletvkkeneelsksveeleenV 37 + +E ++++++ e+++ ++e ++ +v ++e +V T330817_2 678 GMVEAEVGRMEAEVGMREAEVGMMEVEVGMMEAEV 712 66899***********************9999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4898.44 // Query: T330817_3 [L=839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 4800.47 // Query: T129492_1 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 5172.94 // Query: T129492_2 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 13.2 0.0 0.11 12.5 0.0 1.2 1 DUF1325 SGF29 tudor-like domain Domain annotation for each model (and alignments): >> DUF1325 SGF29 tudor-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 6.7e-06 0.11 64 100 .. 406 443 .. 381 454 .. 0.72 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 6.7e-06 DUF1325 64 skakpesk.laefpkgkkVLAlY.PeTTtFYkAeVvasp 100 +ka+p+ + +a f+k++ LA P+TT+FY+A ++a+ T129492_2 406 WKANPQMDpKALFQKEQLMLA-L*PQTTCFYRALIHAPL 443 555555555666666666555.669***********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 5732.06 // Query: T129492_3 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 478 (0.0293144); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4705.42 // Query: T157197_1 [L=2854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.64 # Mc/sec: 12757.51 // Query: T157197_2 [L=2853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.72 # Mc/sec: 11336.04 // Query: T157197_3 [L=2853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 13380.24 // Query: T227251_1 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 10961.97 // Query: T227251_2 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 10463.70 // Query: T227251_3 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 9591.73 // Query: T222956_1 [L=402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2053.67 // Query: T222956_2 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.64 # Mc/sec: 1792.49 // Query: T222956_3 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-16 59.8 0.0 3.2e-16 59.2 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 3.6e-12 46.5 0.0 5.2e-12 46.0 0.0 1.2 1 GATase_6 Glutamine amidotransferase domain ------ inclusion threshold ------ 0.1 11.9 0.0 0.14 11.4 0.0 1.2 1 DUF3700 Aluminium induced protein Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 6e-20 3.2e-16 24 122 .. 183 277 .. 177 277 .. 0.94 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 6e-20 GATase_7 24 lvivfnGeiyNykelreeLeakghrfrtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkal 122 +++++nGeiyN+k++++++e ++ +tk D e++l+l+++ ++e+++ l G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se k l T222956_3 183 MWLCYNGEIYNHKKVQHQFE---FEYQTKVDGEIILHLYDK-GGIEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVRSEAKEL 277 799***************97...5689*************9.8******************************.************97799999*99975 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.0 0.0 9.5e-16 5.2e-12 42 130 .. 183 268 .. 177 273 .. 0.86 Alignments for each domain: == domain 1 score: 46.0 bits; conditional E-value: 9.5e-16 GATase_6 42 lllvhNGeiynykelreelpalkglafrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgla 130 ++l +NGeiyn+k+++ +++ + ++++D e++l+l+++ G e+++ +l+G+faf++ d++++++ l rd + gv+pl+ av+e+g++ T222956_3 183 MWLCYNGEIYNHKKVQHQFEF----EYQTKVDGEIILHLYDKGGiEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFL 268 799**********99999998....33468**********9999**************************955.67788888888766665 PP >> DUF3700 Aluminium induced protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 2.6e-05 0.14 81 171 .. 187 272 .. 181 277 .. 0.70 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 2.6e-05 DUF3700 81 fqGslenlasLkkqyGLskta.nevllvieayrtLrDrgPypadqvvkdleGkfafvlyDskaktvfvaldad..gsvplyWGiaadgsvvisd 171 ++G++ n ++++q+ ++ ++ + +++ L D+g +q + l G fafvl Ds +k+v +ld+d g pl+ ++ dg +++ T222956_3 187 YNGEIYNHKKVQHQFEFEYQTkVDGEIILH----LYDKGG--IEQTICTLVGVFAFVLLDSANKKV--SLDRDt*GVRPLFKAVTEDGFLAVRS 272 566677777777777664333034444444....447775..589999***************997..67888677889999999999887754 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.61 # Mc/sec: 1880.64 // Query: T366882_1 [L=271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.63 # Mc/sec: 1230.61 // Query: T366882_2 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.61 # Mc/sec: 1266.27 // Query: T366882_3 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 1576.38 // Query: T222547_1 [L=2023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.63 # Mc/sec: 9186.44 // Query: T222547_2 [L=2022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 10517.45 // Query: T222547_3 [L=2022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 9482.95 // Query: T184390_1 [L=8583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 831 (0.0509628); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.20u 0.52s 00:00:04.72 Elapsed: 00:00:01.05 # Mc/sec: 23385.24 // Query: T184390_2 [L=8582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 8.6 12.3 1.7 7.8 12.3 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.3 0.00011 1.7 181 207 .. 4456 4482 .. 4426 4505 .. 0.60 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00011 SelP_N 181 ktehehahshkqghkhhekhghhHkek 207 + +++h+h++ h+hh +h+hhH+++ T184390_2 4456 PPPSPSPHHHTHHHQHHPHHHHHHHHH 4482 333444555555555555555555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1138 (0.0697903); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 87 (0.00533546); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.94u 0.56s 00:00:04.50 Elapsed: 00:00:00.93 # Mc/sec: 26399.62 // Query: T184390_3 [L=8582] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8582 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.90u 0.47s 00:00:03.37 Elapsed: 00:00:00.88 # Mc/sec: 27899.59 // Query: T268280_1 [L=1862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-05 22.7 1.8 0.00011 21.6 1.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 1.8 6.6e-09 0.00011 2 14 .. 699 711 .. 699 711 .. 0.98 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 6.6e-09 DUF1725 2 FagKWMELEnIIL 14 Fag+WMELE IIL T268280_1 699 FAGTWMELEAIIL 711 9***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.72 # Mc/sec: 7398.42 // Query: T268280_2 [L=1862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 7950.55 // Query: T268280_3 [L=1862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 8591.72 // Query: T354191_1 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 5581.22 // Query: T354191_2 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 5032.25 // Query: T354191_3 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 4722.57 // Query: T090336_1 [L=2128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-43 144.5 21.7 2.1e-31 107.8 11.6 2.6 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.7 2.4 5.4e-15 8.8e-11 15 57 .. 383 425 .. 380 429 .. 0.93 2 ! 107.8 11.6 1.3e-35 2.1e-31 13 89 .] 434 509 .. 434 509 .. 0.98 Alignments for each domain: == domain 1 score: 41.7 bits; conditional E-value: 5.4e-15 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpne 57 g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090336_1 383 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKVSR 425 567*************************************865 PP == domain 2 score: 107.8 bits; conditional E-value: 1.3e-35 Colipase-like 13 lngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 +ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090336_1 434 PNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 509 79******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.70 # Mc/sec: 8696.92 // Query: T090336_2 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.72 # Mc/sec: 8451.37 // Query: T090336_3 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 9082.07 // Query: T264573_1 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 4286.56 // Query: T264573_2 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 4664.17 // Query: T264573_3 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.74 # Mc/sec: 3529.65 // Query: T225041_1 [L=720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.089 12.4 0.0 0.19 11.4 0.0 1.4 1 YdjO Cold-inducible protein YdjO Domain annotation for each model (and alignments): >> YdjO Cold-inducible protein YdjO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 1.1e-05 0.19 13 32 .. 308 327 .. 303 336 .. 0.88 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 1.1e-05 YdjO 13 eeetkvWeCtsedCngWmRd 32 ++ +vW+ t+ C++W+R+ T225041_1 308 DKASTVWKGTQAACHCWLRQ 327 56779**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 3322.25 // Query: T225041_2 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3372.03 // Query: T225041_3 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 3317.64 // Query: T235023_1 [L=2218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.72 # Mc/sec: 8812.95 // Query: T235023_2 [L=2218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.77 # Mc/sec: 8240.68 // Query: T235023_3 [L=2218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 503 (0.0308475); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 9470.63 // Query: T089136_1 [L=3551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.34s 00:00:01.52 Elapsed: 00:00:00.63 # Mc/sec: 16125.09 // Query: T089136_2 [L=3550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-14 53.4 0.0 3e-14 52.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 1.5e-05 24.7 1.0 1.5e-05 24.7 1.0 2.0 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.033 13.8 2.7 0.084 12.5 2.7 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.9 0.0 5.6e-18 3e-14 133 210 .. 2365 2442 .. 2364 2443 .. 0.98 Alignments for each domain: == domain 1 score: 52.9 bits; conditional E-value: 5.6e-18 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089136_2 2365 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 2442 79*************************************************************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 0.7 3 1.6e+04 7 11 .. 161 165 .. 161 165 .. 0.96 2 ! 24.7 1.0 2.8e-09 1.5e-05 2 17 .. 2492 2507 .. 2491 2508 .. 0.94 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 3 SSSSS CS zf-CCHC 7 GepGH 11 G+pGH T089136_2 161 GQPGH 165 9**** PP == domain 2 score: 24.7 bits; conditional E-value: 2.8e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089136_2 2492 SCFKCQKSGHWAKECP 2507 6**************9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 2.7 1.5e-05 0.084 1 18 [. 2489 2506 .. 2489 2507 .. 0.96 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.5e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089136_2 2489 PSGSCFKCQKSGHWAKEC 2506 7999************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.66 # Mc/sec: 15387.80 // Query: T089136_3 [L=3550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.78 # Mc/sec: 13020.44 // Query: T258639_1 [L=3363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 53 (0.00325034); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.74 # Mc/sec: 13001.31 // Query: T258639_2 [L=3363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00015 21.4 1.0 17 5.2 0.1 6.2 6 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin Domain annotation for each model (and alignments): >> 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.2 0.1 0.0011 17 15 23 .. 827 835 .. 827 836 .. 0.96 2 ! 2.4 0.0 0.0078 1.3e+02 15 23 .. 1156 1164 .. 1156 1165 .. 0.96 3 ! 5.2 0.1 0.0011 17 15 23 .. 1501 1509 .. 1501 1510 .. 0.96 4 ? -1.4 0.0 0.12 1.9e+03 15 23 .. 2035 2043 .. 2034 2044 .. 0.87 5 ? -0.1 0.0 0.046 7.6e+02 13 23 .. 2788 2798 .. 2788 2800 .. 0.90 6 ? -2.5 0.0 0.26 4.3e+03 13 23 .. 2960 2970 .. 2960 2971 .. 0.91 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0011 TT.TBT-EE CS 1-cysPrx_C 15 nWkpGdkvi 23 nW+pG+kv+ T258639_2 827 NWRPGEKVM 835 9*******9 PP == domain 2 score: 2.4 bits; conditional E-value: 0.0078 TT.TBT-EE CS 1-cysPrx_C 15 nWkpGdkvi 23 nW++G+kv+ T258639_2 1156 NWRHGEKVM 1164 9*******9 PP == domain 3 score: 5.2 bits; conditional E-value: 0.0011 TT.TBT-EE CS 1-cysPrx_C 15 nWkpGdkvi 23 nW+pG+kv+ T258639_2 1501 NWRPGEKVM 1509 9*******9 PP == domain 4 score: -1.4 bits; conditional E-value: 0.12 TT.TBT-EE CS 1-cysPrx_C 15 nWkpGdkvi 23 W+pG++ + T258639_2 2035 SWRPGEELM 2043 5*****998 PP == domain 5 score: -0.1 bits; conditional E-value: 0.046 -TTT.TBT-EE CS 1-cysPrx_C 13 PAnWkpGdkvi 23 P+ W+pG + + T258639_2 2788 PCSWRPGRELM 2798 999****9988 PP == domain 6 score: -2.5 bits; conditional E-value: 0.26 -TTT.TBT-EE CS 1-cysPrx_C 13 PAnWkpGdkvi 23 P+ W pG + + T258639_2 2960 PCSWIPGRELM 2970 999****9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 61 (0.00374095); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.76 # Mc/sec: 12659.17 // Query: T258639_3 [L=3362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 48 (0.0029437); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 13358.49 // Query: T125945_1 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.68 # Mc/sec: 8334.27 // Query: T125945_2 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.68 # Mc/sec: 8334.27 // Query: T125945_3 [L=1980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.74 # Mc/sec: 7654.65 // Query: T352772_1 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 4991.05 // Query: T352772_2 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 4770.85 // Query: T352772_3 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 5232.55 // Query: T130372_1 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 2452.14 // Query: T130372_2 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.68 # Mc/sec: 2271.84 // Query: T130372_3 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 2413.83 // Query: T051334_1 [L=4354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.42s 00:00:02.29 Elapsed: 00:00:00.82 # Mc/sec: 15190.31 // Query: T051334_2 [L=4354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00035 20.7 0.2 0.43 10.8 0.0 3.2 3 DUF912 Nucleopolyhedrovirus protein of unknown function (D Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.1 0.11 1.8e+03 61 79 .. 2153 2171 .. 2143 2171 .. 0.77 2 ! 5.9 0.0 0.00089 14 55 80 .. 2308 2336 .. 2272 2337 .. 0.61 3 ! 10.8 0.0 2.6e-05 0.43 48 89 .. 2412 2453 .. 2392 2466 .. 0.41 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.11 DUF912 61 qalnillisllavvcvlvl 79 +++ ++++++++v++v+v+ T051334_2 2153 EMKMMVVMVMVTVMTVMVV 2171 5667888999999999986 PP == domain 2 score: 5.9 bits; conditional E-value: 0.00089 DUF912 55 n...aaekaqalnillisllavvcvlvll 80 + + ++n+++++++++v+v+v++ T051334_2 2308 DggdDGDCDVMMNVMVMVMIVMVTVMVIV 2336 23335566778999999999999999987 PP == domain 3 score: 10.8 bits; conditional E-value: 2.6e-05 DUF912 48 ditekesn..aaekaqalnillisllavvcvlvllyviyYfvil 89 d++ + + + + +++++++++v+v+v++++i+ vi+ T051334_2 2412 DSDDD--DggDCDDSDSDGVMMMVMMVMVTVIVMVMMIVMTVIV 2453 11111..1223333333344444444444444444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1052 (0.0645161); expected 326.1 (0.02) Passed bias filter: 320 (0.0196247); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.31u 0.40s 00:00:02.71 Elapsed: 00:00:00.83 # Mc/sec: 15007.29 // Query: T051334_3 [L=4353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1397 (0.085674); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.47s 00:00:02.78 Elapsed: 00:00:00.91 # Mc/sec: 13684.83 // Query: T360951_1 [L=1053] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1053 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 4706.96 // Query: T360951_2 [L=1052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 5787.68 // Query: T360951_3 [L=1052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 4491.93 // Query: T165559_1 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 4168.01 // Query: T165559_2 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 4104.86 // Query: T165559_3 [L=946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 4295.79 // Query: T275913_1 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0073 15.6 0.0 0.012 15.0 0.0 1.2 1 DUF1510 Protein of unknown function (DUF1510) ------ inclusion threshold ------ 0.02 14.7 0.2 0.034 13.9 0.2 1.3 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.022 14.9 0.0 0.042 14.0 0.0 1.5 1 DUF912 Nucleopolyhedrovirus protein of unknown function 0.08 13.6 0.2 0.08 13.6 0.2 3.0 2 EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.085 12.6 5.6 0.18 11.6 5.6 1.4 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 0.14 12.0 0.0 0.22 11.3 0.0 1.2 1 TMEM154 TMEM154 protein family 0.33 11.1 16.4 0.47 10.5 16.4 1.2 1 DUF1777 Protein of unknown function (DUF1777) 9.4 5.8 6.8 15 5.1 6.8 1.2 1 ASFV_J13L African swine fever virus J13L protein Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 5.8e-06 0.012 5 58 .. 69 122 .. 64 127 .. 0.65 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 5.8e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275913_1 69 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 122 334444555566667777777777788888888888887777777666666554 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.2 1.6e-05 0.034 85 139 .. 49 101 .. 25 109 .. 0.51 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.6e-05 LRRC37AB_C 85 inesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275913_1 49 HRHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 101 2333333344444455556666667777777777666666555555554444..4 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 2.1e-05 0.042 39 87 .. 52 98 .. 19 114 .. 0.51 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.1e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275913_1 52 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 98 111222222222222223344444444444444444444433222..11 PP >> EphA2_TM Ephrin type-A receptor 2 transmembrane domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -14.3 16.6 8 1.6e+04 28 28 .. 41 41 .. 2 79 .. 0.57 2 ? 13.6 0.2 3.9e-05 0.08 4 49 .. 81 126 .. 78 132 .. 0.58 Alignments for each domain: == domain 1 score: -14.3 bits; conditional E-value: 8 EphA2_TM 28 k 28 + T275913_1 41 H 41 0 PP == domain 2 score: 13.6 bits; conditional E-value: 3.9e-05 EphA2_TM 4 aaiaglvllvilviivlvlvrrrsknrkqksdlsseekkeeensgk 49 ++i+ +++++i++i++++++++ s++++ +s++s++++ +++++++ T275913_1 81 IIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHHHHHH 126 4555666666666666666666666665555555555555555544 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 5.6 8.8e-05 0.18 26 58 .. 82 114 .. 74 122 .. 0.68 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 8.8e-05 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssna 58 +++ti+++++iii+ ++++ s s+ s sss++ T275913_1 82 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSS 114 678999999999888888876554444333333 PP >> TMEM154 TMEM154 protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00011 0.22 55 82 .. 75 102 .. 53 126 .. 0.66 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00011 TMEM154 55 qlelvlmiiiPlvllillllvviiliqk 82 + + ++iii + +i++++v ii+i T275913_1 75 HHHHTIIIIITIITIIIIIIVTIIIISS 102 3444677777777777777777777754 PP >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 16.4 0.00023 0.47 16 90 .. 16 121 .. 1 128 [. 0.35 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00023 DUF1777 16 rdrrdrdr...rdrdrdrdrsrdrrsrerersrsrsrrrr.ersrsrdrsrrrrssrrsr............................kesekrseskss 83 ++++++++ + + +++++++r++++++++++r+++++ +++++r ++++r++++r++ + s+++++s+ss T275913_1 16 HHHHHHHHhhhHHHHHHHHHHHHRHHHRHHHHHHRHHHHHhRHHHQRHHHHHRHHHQRHHhhhtiiiiitiitiiiiiivtiiiisspS-SSSSPSSSSS 114 11111111111111111111111111111111111111111222233333333333333356668999999999999999999987531.2222222222 PP DUF1777 84 keskers 90 +s++++ T275913_1 115 PSSSSHH 121 2222222 PP >> ASFV_J13L African swine fever virus J13L protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 6.8 0.0074 15 29 55 .. 77 103 .. 69 110 .. 0.81 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0074 ASFV_J13L 29 thmytiliaivvliiiiivliylfssr 55 h i+i+i+ +iiiiiv i ++ss T275913_1 77 HHTIIIIITIITIIIIIIVTIIIISSP 103 466677888999999999*99999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1223 (0.0750031); expected 326.1 (0.02) Passed bias filter: 288 (0.0176622); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 3790.60 // Query: T275913_2 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.039 14.1 11.6 0.068 13.3 11.6 1.3 1 DUF3446 Domain of unknown function (DUF3446) 1.3 8.4 12.4 1.9 7.9 12.4 1.1 1 SR-25 Nuclear RNA-splicing-associated protein 2.8 7.1 17.9 4.3 6.5 17.9 1.1 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 11.6 1.3e-05 0.068 20 69 .. 67 114 .. 58 121 .. 0.50 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.3e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssele 69 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ + T275913_2 67 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHRH 114 233444..233335666666666666666666555554444333333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 12.4 0.00035 1.9 65 98 .. 80 112 .. 77 119 .. 0.31 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00035 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275913_2 80 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 112 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 17.9 0.0008 4.3 177 204 .. 91 118 .. 74 122 .. 0.52 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0008 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275913_2 91 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 118 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1394 (0.08549); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 3905.47 // Query: T275913_3 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.035 13.6 1.7 0.057 12.9 1.7 1.2 1 EVI2A Ectropic viral integration site 2A protein (EVI2A) 2.1 7.6 22.9 3 7.0 22.9 1.1 1 SelP_N Selenoprotein P, N terminal region 6.9 7.3 13.9 9.4 6.8 13.9 1.1 1 PRCC Mitotic checkpoint regulator, MAD2B-interacting 9.5 6.5 10.5 15 5.8 10.5 1.2 1 DUF1180 Protein of unknown function (DUF1180) Domain annotation for each model (and alignments): >> EVI2A Ectropic viral integration site 2A protein (EVI2A) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 1.7 1.4e-05 0.057 59 155 .. 25 119 .. 3 121 .. 0.61 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 1.4e-05 EVI2A 59 npvtpevdkkskstetletetsspsvslapkseeelttpsvvrnsssttqstentskskseifKkevCeennnkmamLiCliiiAvLfLiCtlLFLs 155 +p +p + s s++ ++++ s++s+s ++ s+++ +++s+ ++ss++ s+ ++ +++ + + Li +iii +++i t++ +s T275913_3 25 SPSSPSSS-PSPSSSSPSSSSSPSSPSPSS-SSSSPSSASPSSSSSPSSASPSSSYHHHHHHHHHHHHHHHRHHHHHLITIIIIITIIIIVTIIIIS 119 22222222.223444444343333333333.333344444567777788888888888888888788888888999999999999999999998877 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 22.9 0.00074 3 170 204 .. 64 99 .. 42 102 .. 0.44 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00074 SelP_N 170 aaeekpaeaeektehehahsh.kqghkhhekhghhH 204 ++ p++a+++ + +h+h+h ++ h+hh++h+hhH T275913_3 64 SSSSSPSSASPSSSYHHHHHHhHHHHHHHHRHHHHH 99 333444444444333333333023333333333333 PP >> PRCC Mitotic checkpoint regulator, MAD2B-interacting # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 13.9 0.0023 9.4 12 87 .. 8 80 .. 1 132 [. 0.38 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0023 PRCC 12 ssaaaksapti.syeplvssapsveesseedppetepepasqpeaenadleakkaakssea..mvpepteqdpypgyyl 87 ss++++++p++ s++p+ +s ps++ s+ +++p ++++p+s +++++++++ ss + + +p+ +p +y++ T275913_3 8 SSPSSSPSPSSpSSSPSSPSSPSSSPSPSSSSPSSSSSPSS------PSPSSSSSSPSSASpsSSSSPSSASPSSSYHH 80 33333333333122233333322222222222222222222......22222222222211222222222222222222 PP >> DUF1180 Protein of unknown function (DUF1180) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 10.5 0.0036 15 22 119 .. 8 117 .. 2 119 .. 0.59 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0036 DUF1180 22 asralspaasspeaepPlppgataaespgkataieaksaqaaeggngss.pgagsaadaggslavvp...........elssntdkpmtlqrallvlvvv 109 s+++sp++ssp+++p +p +++++ sp +++ +++s+ + ++ ss p ++s + +++ + +p + + +++ + + +++++++ T275913_3 8 SSPSSSPSPSSPSSSPSSPSSPSSSPSPSSSSPSSSSSPSSPSPSSSSSsPSSASPSSSSSPSSASPsssyhhhhhhhHHHHHHHHRHHHHHLITIIIII 107 5667788888888887666667777677666665666666555444333244444444444444444667777777763334444444446778888888 PP DUF1180 110 saavivylvv 119 + ++iv +++ T275913_3 108 TIIIIVTIII 117 8888887765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1079 (0.066172); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 139 (0.00852447); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.16u 0.43s 00:00:01.59 Elapsed: 00:00:00.81 # Mc/sec: 3182.23 // Query: T352144_1 [L=2330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.42s 00:00:01.54 Elapsed: 00:00:00.83 # Mc/sec: 8031.00 // Query: T352144_2 [L=2330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-25 88.0 0.3 5.8e-25 86.8 0.3 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.8 0.3 3.6e-29 5.8e-25 9 80 .] 2148 2219 .. 2143 2219 .. 0.92 Alignments for each domain: == domain 1 score: 86.8 bits; conditional E-value: 3.6e-29 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldkl..rqklqekrpalvnr 80 aqWld +++pk+++kp+l qkkvm+tVwWsa+ li+y+fl+ g+titse+Yaqq+d+l + lq+++palvnr T352144_2 2148 AQWLDPEAAPKQFSKPSLYQKKVMVTVWWSAACLIHYSFLNLGKTITSEKYAQQIDELp*K--LQCLQPALVNR 2219 7********************************************************9333..67777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.66 # Mc/sec: 10099.60 // Query: T352144_3 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.63 # Mc/sec: 10575.99 // Query: T129792_1 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.30s 00:00:01.65 Elapsed: 00:00:00.56 # Mc/sec: 26791.42 // Query: T129792_2 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.29s 00:00:01.56 Elapsed: 00:00:00.56 # Mc/sec: 26791.42 // Query: T129792_3 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.56 # Mc/sec: 26791.42 // Query: T211922_1 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 5 (0.000306636); expected 326.1 (0.02) Passed bias filter: 3 (0.000183981); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.46 # Mc/sec: 2419.27 // Query: T211922_2 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 2318.46 // Query: T211922_3 [L=388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 27.5 16.3 0.022 13.8 1.9 3.9 4 DUF3737 Protein of unknown function (DUF3737) ------ inclusion threshold ------ 0.65 10.1 17.9 2.5 8.2 0.9 5.5 6 SMBP Small metal-binding protein Domain annotation for each model (and alignments): >> DUF3737 Protein of unknown function (DUF3737) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.3 0.0 0.0089 72 120 164 .. 3 47 .. 1 52 [. 0.86 2 ! 13.7 4.3 2.9e-06 0.023 37 221 .. 56 237 .. 51 242 .. 0.86 3 ! 11.1 2.3 1.8e-05 0.15 38 159 .. 171 289 .. 151 293 .. 0.53 4 ! 13.8 1.9 2.7e-06 0.022 37 162 .. 246 368 .. 243 385 .. 0.69 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.0089 DUF3737 120 klknvelkgdYllmnsenikidnlklkgkysfqyvknveiknskl 164 +++ ++ +++Y +s++ ++++++ ++ y+ + ++ +++ ++ T211922_3 3 RMTGCTQHTTYTRATSQDTRMTGCTQHTTYTHTMRQDTRMTGCTQ 47 6778888999*********************99999999888765 PP == domain 2 score: 13.7 bits; conditional E-value: 2.9e-06 DUF3737 37 sknievknclfklkYplWhsknvkvenstle.etaraalWYtknikikdtkieapKalreckniklenvklsnaeetlWkcknvklknvelkgdYllmns 135 s++ +++ c+ ++ Y + ++++++ +t + + +ra+ +++ +++ ++ ++p + +++ +++ ++ ++++t ++++ +++ ++ +++Y + T211922_3 56 SQDTRMRGCTQHTTYTHTTRQDTRMRGCTQHtTYTRAT---SQDTRMTGCTQHTPSTRAMSQDTRMTGCTQ-HTTYTRATSQDTRMTGCTQHTTYTHTTR 151 77888899999999999999999999998651557776...899999999999999999999999999998.9999999999999999999999999999 PP DUF3737 136 enikidnlklkgkysfqyvknveiknsklkskDafWnaenvtvydsvikGeylgWnsknltlvnctiegtqplcYienlvlenckl 221 ++ ++++++ ++ y+ + ++ ++ ++ ++ + ++ ++ ++ + y s++ +++ ct + t ++ ++ c+ T211922_3 152 QDTRMTGCTQHTTYTRAMSQDTCMRGCTQHTTYTHTTRQDTRMTGCTQHTTYTRATSQDTHMTGCTQHTTYTHTMSQDTRMTGCTQ 237 99999999999999999999999999999999999999999999999999999999999999999988888888888888888875 PP == domain 3 score: 11.1 bits; conditional E-value: 1.8e-05 DUF3737 38 knievknclfklkYplWhsknvkvenstle.etaraalWYtknikikdtkieapKalreckniklenvklsnaeetlWkcknvklknvelkgdYllmnse 136 ++ ++ c+ ++ Y + ++++++ +t + + +ra+ +++ +++ ++ +++ + +++ +++ ++ ++++t ++++ +++ ++ +++Y +s+ T211922_3 171 QDTCMRGCTQHTTYTHTTRQDTRMTGCTQHtTYTRAT---SQDTHMTGCTQHTTYTHTMSQDTRMTGCTQ-HTTYTRATSQDTHMTGCTQHTTYTRATSQ 266 4444555555555555555555555554430334443...555555555555555555555555555555.55555555555556555555556655566 PP DUF3737 137 nikidnlklkgkysfqyvknvei 159 + ++++++ ++ y+ + ++ ++ T211922_3 267 DTRMTGCTQHTTYTRATSQDTHM 289 55555555555555555555544 PP == domain 4 score: 13.8 bits; conditional E-value: 2.7e-06 DUF3737 37 sknievknclfklkYplWhsknvkvenstle.etaraalWYtknikikdtkieapKalreckniklenvklsnaeetlWkcknvklknvelkgdYllmns 135 s++ +++ c+ ++ Y +s++++++ +t + + +ra+ +++ +++ ++ +a+ + +++ +++ ++ +a++t ++++ +++ ++ +++Y + T211922_3 246 SQDTHMTGCTQHTTYTRATSQDTRMTGCTQHtTYTRAT---SQDTHMRGCTQHATYTRATSQDTHMRGCTQ-HATYTRATSQDTRMRGCTQNTTYTHTTR 341 56666777777777777777777777776541445664...677777777777777777777777777776.7777777777777777777777777777 PP DUF3737 136 enikidnlklkgkysfqyvknveikns 162 ++ ++++++ ++ y+ + ++ ++++ T211922_3 342 QDTRMTGCTQHTTYTRAMSQDTCMTQC 368 777777777777777777777666665 PP >> SMBP Small metal-binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.1 0.043 3.5e+02 26 55 .. 41 70 .. 3 108 .. 0.61 2 ? 2.7 0.1 0.016 1.3e+02 18 59 .. 109 150 .. 87 189 .. 0.71 3 ? 4.5 1.2 0.0044 36 32 64 .. 199 240 .. 173 260 .. 0.54 4 ? 3.3 0.2 0.01 82 18 54 .. 242 278 .. 234 282 .. 0.80 5 ? 8.2 0.9 0.00031 2.5 18 63 .. 280 325 .. 270 352 .. 0.79 6 ? -2.2 0.0 0.54 4.4e+03 26 54 .. 345 373 .. 330 386 .. 0.65 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.043 HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS SMBP 26 hlaeAiehaeaAvahgkaghakalveHaee 55 +++ +h+ a +++ + + ++H++ T211922_3 41 RMTGCTQHTTYTRATSQDTRMRGCTQHTTY 70 444445555555555555555555555544 PP == domain 2 score: 2.7 bits; conditional E-value: 0.016 XXXXXX--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS SMBP 18 ssavaaeehlaeAiehaeaAvahgkaghakalveHaeealkh 59 + a++++++++ +h+ a +++ +++ ++H++ + T211922_3 109 TRAMSQDTRMTGCTQHTTYTRATSQDTRMTGCTQHTTYTHTT 150 445555567777777777777777777777777777655544 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0044 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH.......... CS SMBP 32 ehaeaAvahgkaghakalveHaeealkhakaa.........a 64 +h+ a +++ h+++ ++H++ + +++ T211922_3 199 QHTTYTRATSQDTHMTGCTQHTTYTHTMSQDTrmtgctqhtT 240 555555555555555555555544444444443333322222 PP == domain 4 score: 3.3 bits; conditional E-value: 0.01 XXXXXX--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS SMBP 18 ssavaaeehlaeAiehaeaAvahgkaghakalveHae 54 + a ++++h++ +h+ a +++ +++ ++H++ T211922_3 242 TRATSQDTHMTGCTQHTTYTRATSQDTRMTGCTQHTT 278 4556667799999999999999999999999999986 PP == domain 5 score: 8.2 bits; conditional E-value: 0.00031 XXXXXX--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS SMBP 18 ssavaaeehlaeAiehaeaAvahgkaghakalveHaeealkhakaa 63 + a ++++h+ +ha a +++ h+ + ++Ha+ +++ T211922_3 280 TRATSQDTHMRGCTQHATYTRATSQDTHMRGCTQHATYTRATSQDT 325 45667778****************************9776666655 PP == domain 6 score: -2.2 bits; conditional E-value: 0.54 HHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS SMBP 26 hlaeAiehaeaAvahgkaghakalveHae 54 +++ +h+ a +++ +++ ++H + T211922_3 345 RMTGCTQHTTYTRAMSQDTCMTQCTQHVT 373 55555666666666666666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 749 (0.045934); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.49 # Mc/sec: 2265.31 // Query: T353743_1 [L=7348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.8 0.0 0.003 17.7 0.0 2.4 2 Ank_5 Ankyrin repeats (many copies) 0.00069 20.0 0.0 0.0015 18.9 0.0 1.5 1 Ank_2 Ankyrin repeats (3 copies) ------ inclusion threshold ------ 0.025 15.0 0.0 0.058 13.9 0.0 1.7 1 Ank_4 Ankyrin repeats (many copies) 0.036 14.5 0.0 2.5 8.8 0.0 3.0 2 Ank_3 Ankyrin repeat 0.087 13.2 0.1 15 6.1 0.0 3.0 2 Ank Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.8 0.0 0.0055 18 7 53 .. 1398 1444 .. 1393 1444 .. 0.87 2 ! 17.7 0.0 9.3e-07 0.003 6 52 .. 1430 1476 .. 1425 1476 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0055 Ank_5 7 advnrldgggntpLhlAakggalevvrlLlargadlnltdsrgltal 53 a + ++d +gntpL Aa gg++ +++l + ga++n + + g+t+l T353743_1 1398 ALAECEDSYGNTPLSEAAAGGQPLAIQLRAELGASPNSKGAFGPTPL 1444 667789999*************9999999999********9999997 PP == domain 2 score: 17.7 bits; conditional E-value: 9.3e-07 Ank_5 6 padvnrldgggntpLhlAakggalevvrlLlargadlnltdsrglta 52 a++n+ +g tpL Aa gg+l +v++Ll+ gad++++ ++g t+ T353743_1 1430 GASPNSKGAFGPTPLYRAAFGGHLAAVEVLLKLGADPRVYAEDGSTP 1476 599999999999*********************************98 PP >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 4.6e-07 0.0015 21 81 .. 1401 1467 .. 1373 1470 .. 0.74 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 4.6e-07 Ank_2 21 dpnk.ngetaLhyAarngnleivklLleha..ad...ndgrtaLhlAarsghleivklLlekgadin 81 ++++ g+t+L Aa +g+ +++l e + + g t+L+ Aa+ ghl +v++Ll+ gad+ T353743_1 1401 ECEDsYGNTPLSEAAAGGQPLAIQLRAELGasPNskgAFGPTPLYRAAFGGHLAAVEVLLKLGADPR 1467 3332489**********986555555553335443457799*******99**********88**986 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.8e-05 0.058 2 55 .] 1408 1460 .. 1407 1460 .. 0.94 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.8e-05 Ank_4 2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 +t+L aa+ g+ +++l e ga++n + G t+l++Aa +g++ +++ Ll T353743_1 1408 NTPLSEAAAGGQPLAIQLRAELGASPNSK-GAFGPTPLYRAAFGGHLAAVEVLL 1460 79999999999999999999********9.*********************997 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.094 3.1e+02 1 30 [. 1406 1434 .. 1406 1435 .. 0.74 2 ? 8.8 0.0 0.00076 2.5 2 30 .. 1440 1467 .. 1439 1468 .. 0.93 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.094 Ank_3 1 nGetpLhlAarsgrpeivkfLlenlgadvn 30 +G+tpL +Aa g+p ++ L lga +n T353743_1 1406 YGNTPLSEAAAGGQPL-AIQLRAELGASPN 1434 79**********9997.5544444666655 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00076 Ank_3 2 GetpLhlAarsgrpeivkfLlenlgadvn 30 G tpL +Aa g+++ v+ Ll+ lgad++ T353743_1 1440 GPTPLYRAAFGGHLAAVEVLLK-LGADPR 1467 77********************.****96 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.027 86 1 30 [. 1406 1436 .. 1406 1438 .. 0.83 2 ? 6.1 0.0 0.0048 15 4 27 .. 1442 1466 .. 1440 1471 .. 0.91 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.027 TSBBHHHHHHHHTTHHHHHHH...HTTTSTTCB CS Ank 1 dGnTPLHlAatngkkriiklL...LhGAdlnal 30 +GnTPL Aa +g++ i+ L L GA++n++ T353743_1 1406 YGNTPLSEAAAGGQPLAIQ-LraeL-GASPNSK 1436 7******999899999999.75555.9999976 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0048 BHHHHHHHHTTHHHHHHHHT.TTST CS Ank 4 TPLHlAatngkkriiklLLh.GAdl 27 TPL Aa +g++ ++ LL+ GAd+ T353743_1 1442 TPLYRAAFGGHLAAVEVLLKlGADP 1466 9*****************955**97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.65u 0.32s 00:00:01.97 Elapsed: 00:00:00.61 # Mc/sec: 34461.28 // Query: T353743_2 [L=7348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 8.9 5.1 3.4 7.3 5.1 1.9 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.1 0.00021 3.4 7 23 .. 4259 4275 .. 4258 4276 .. 0.94 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00021 DUF3704 7 SFGYMPksgIAGSSdSi 23 S+GY P +gIAGS +S+ T353743_2 4259 SSGYIPSNGIAGSNGSS 4275 9************9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 989 (0.0606525); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.03u 0.38s 00:00:02.40 Elapsed: 00:00:00.65 # Mc/sec: 32340.58 // Query: T353743_3 [L=7347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.32s 00:00:01.86 Elapsed: 00:00:00.56 # Mc/sec: 36874.59 // Query: T316418_1 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 15898.80 // Query: T316418_2 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.53 # Mc/sec: 16198.78 // Query: T316418_3 [L=3001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.52 # Mc/sec: 16510.29 // Query: T229057_1 [L=6593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.32s 00:00:01.80 Elapsed: 00:00:00.60 # Mc/sec: 31435.75 // Query: T229057_2 [L=6593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.30s 00:00:01.70 Elapsed: 00:00:00.55 # Mc/sec: 34293.55 // Query: T229057_3 [L=6592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.29s 00:00:01.80 Elapsed: 00:00:00.56 # Mc/sec: 33085.25 // Query: T051305_1 [L=2516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 586 (0.0359377); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.53 # Mc/sec: 13580.85 // Query: T051305_2 [L=2515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 531 (0.0325647); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.53 # Mc/sec: 13575.45 // Query: T051305_3 [L=2515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 722 (0.0442782); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.55 # Mc/sec: 13081.80 // Query: T099508_1 [L=1775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 9765.33 // Query: T099508_2 [L=1775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.24s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9581.08 // Query: T099508_3 [L=1774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9575.68 // Query: T278478_1 [L=937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5256.07 // Query: T278478_2 [L=937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 5256.07 // Query: T278478_3 [L=937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 5470.61 // Query: T227791_1 [L=2362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.52 # Mc/sec: 12994.77 // Query: T227791_2 [L=2361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.49 # Mc/sec: 13784.53 // Query: T227791_3 [L=2361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.48 # Mc/sec: 14071.71 // Query: T062420_1 [L=3519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.55 # Mc/sec: 18304.11 // Query: T062420_2 [L=3519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.53 # Mc/sec: 18994.83 // Query: T062420_3 [L=3519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 17357.35 // Query: T090209_1 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 8118.28 // Query: T090209_2 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7683.37 // Query: T090209_3 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 8118.28 // Query: T230007_1 [L=1022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-21 74.7 0.3 1.2e-20 73.6 0.3 1.5 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 0.018 14.9 3.1 0.029 14.2 3.1 1.2 1 ExsD Antiactivator protein ExsD Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.6 0.3 1.5e-24 1.2e-20 1 53 [. 149 201 .. 149 206 .. 0.96 Alignments for each domain: == domain 1 score: 73.6 bits; conditional E-value: 1.5e-24 TMEM191C 1 meaaaaldasrggselcdsqlrrvqdcagslmeevaradcekrlfggagagal 53 meaa++lda+++g+elcd+qlr vq++++slmee+arad+e+rlfgg++a a+ T230007_1 149 MEAAEELDAWQSGRELCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAI 201 9************************************************9887 PP >> ExsD Antiactivator protein ExsD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 3.1 3.5e-06 0.029 106 231 .. 22 166 .. 17 169 .. 0.76 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 3.5e-06 ExsD 106 veeLeiqinqleikkefWsklaEkessqireqllk.lveslqtklkaqkaelvelesklkeseklvveaWPnfqkslsnlkeladltstepv........ 196 +L+ q + l + ++ E +s++ eq+l+ ++ lq +l+ + +e+kl+++ + eaW fq++ l+ + p T230007_1 22 SRQLQEQWEELSSQLFYYGG--ELQSQKSTEQQLAaQLVTLQNELELAETKCALQEEKLQQDALQTAEAWAIFQEQTVVLQVRPHSDAKVPPaspppdlg 119 57999999999999888665..999999999886527999******9999999*********************99888887755554444446665555 PP ExsD 197 ...........sEaLeelWdalitlend.leaakkvkkWlkerslcl 231 + L++ ++l+ ++ +eaa+++ +W r+lc T230007_1 120 r*vsqptartpPRGLSPHSHPLQEVQVKvMEAAEELDAWQSGRELCD 166 55555444444334888888888887552588888888888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 624 (0.0382681); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 5129.42 // Query: T230007_2 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 5727.27 // Query: T230007_3 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-27 94.3 8.2 8.3e-27 93.6 8.2 1.3 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 0.34 10.3 0.4 0.46 9.9 0.4 1.1 1 TMCO5 TMCO5 family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.6 8.2 1e-30 8.3e-27 51 121 .] 204 274 .. 193 274 .. 0.95 Alignments for each domain: == domain 1 score: 93.6 bits; conditional E-value: 1e-30 TMEM191C 51 galrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T230007_3 204 SPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 274 5689******************************************************************7 PP >> TMCO5 TMCO5 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.4 5.7e-05 0.46 208 275 .] 209 273 .. 196 273 .. 0.83 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 5.7e-05 TMCO5 208 fwkralrflffmvlifirLlgyvlfhlqyinpdllvevLPkilsRrtlweLReflfPfLtlevedlLP 275 ++ al++l+ l+f +L+ l++ ++p + L ++ s tl +LR l+P+L l+++ lLP T230007_3 209 CVLGALQVLLTLPLLFLGLS---LLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLP 273 46778888888888888886...3444468***9999******************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.70 # Mc/sec: 4172.72 // Query: T051541_1 [L=4682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0057 16.4 6.3 0.52 10.1 1.1 2.3 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.1 3.2e-05 0.52 9 39 .. 111 141 .. 110 142 .. 0.70 2 ! 9.8 0.7 3.9e-05 0.64 3 40 .] 140 177 .. 139 180 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.2e-05 Pentapeptide_2 9 GsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 Gs+ tG++ +Gs+ tGs +Gs+ tG + tG T051541_1 111 GSVATGTVAMGSVATGSVATGSVATGTVATG 141 7777777777777777777777777777776 PP == domain 2 score: 9.8 bits; conditional E-value: 3.9e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntGs 40 tGs+ +G++ tG++ +G++ tGs Gs+ Gs tGs T051541_1 140 TGSVATGTVATGSVATGTVATGSVARGSVARGSMATGS 177 78888888888888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.70u 0.37s 00:00:02.06 Elapsed: 00:00:00.76 # Mc/sec: 17624.22 // Query: T051541_2 [L=4682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 30 (0.00183981); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.38s 00:00:01.85 Elapsed: 00:00:00.76 # Mc/sec: 17624.22 // Query: T051541_3 [L=4682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 554 (0.0339752); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.36s 00:00:01.94 Elapsed: 00:00:00.70 # Mc/sec: 19134.87 // Query: T376365_1 [L=5109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:00.92 # Mc/sec: 15886.94 // Query: T376365_2 [L=5109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.69 # Mc/sec: 21182.58 // Query: T376365_3 [L=5108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.40s 00:00:02.08 Elapsed: 00:00:00.77 # Mc/sec: 18978.08 // Query: T256198_1 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 8800.07 // Query: T256198_2 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 10772.50 // Query: T256198_3 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 8925.79 // Query: T161973_1 [L=261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 1185.20 // Query: T161973_2 [L=260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.57 # Mc/sec: 1282.44 // Query: T161973_3 [L=260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 1458.46 // Query: T125465_1 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 9867.52 // Query: T125465_2 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.64 # Mc/sec: 9404.98 // Query: T125465_3 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:00.77 # Mc/sec: 7813.41 // Query: T233826_1 [L=3257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1393 (0.0854287); expected 326.1 (0.02) Passed bias filter: 383 (0.0234883); expected 326.1 (0.02) Passed Vit filter: 199 (0.0122041); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.16u 0.44s 00:00:03.60 Elapsed: 00:00:01.10 # Mc/sec: 8470.66 // Query: T233826_2 [L=3257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1624 (0.0995952); expected 326.1 (0.02) Passed bias filter: 485 (0.0297437); expected 326.1 (0.02) Passed Vit filter: 292 (0.0179075); expected 16.3 (0.001) Passed Fwd filter: 64 (0.00392494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.36u 0.54s 00:00:04.90 Elapsed: 00:00:01.25 # Mc/sec: 7454.18 // Query: T233826_3 [L=3257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1641 (0.100638); expected 326.1 (0.02) Passed bias filter: 501 (0.0307249); expected 326.1 (0.02) Passed Vit filter: 265 (0.0162517); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.74u 0.48s 00:00:04.22 Elapsed: 00:00:01.13 # Mc/sec: 8173.44 // Query: T221678_1 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 3129.03 // Query: T221678_2 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.71 # Mc/sec: 2820.54 // Query: T221678_3 [L=699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 3029.88 // Query: T210736_1 [L=686] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (686 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3019.28 // Query: T210736_2 [L=686] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (686 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 3504.52 // Query: T210736_3 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3999.32 // Query: T099748_1 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 3770.67 // Query: T099748_2 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 3485.01 // Query: T099748_3 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 3898.49 // Query: T172828_1 [L=527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 2692.25 // Query: T172828_2 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.59 # Mc/sec: 2550.50 // Query: T172828_3 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0016 16.4 10.8 0.007 14.3 1.7 2.1 2 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein ------ inclusion threshold ------ 0.18 11.4 0.0 4.5 6.9 0.0 2.2 2 IncA IncA protein Domain annotation for each model (and alignments): >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 1.7 8.6e-07 0.007 501 594 .. 283 376 .. 276 382 .. 0.91 2 ! 7.1 4.5 0.00013 1 499 566 .. 372 439 .. 355 467 .. 0.76 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 8.6e-07 Herpes_BLLF1 501 skapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatspt 594 s p + sp ++ p p sp p++ p p sp l p ++ +p p p++ +p p p p + +p p sp T172828_3 283 SPLPSLQSPLPSLQHPFPSLQSPLPSLQHPFPSLQSPLLSLQRPFPSLQSPLPSLQCSVPSLQSPLPSLQFPFTSLQLPLRPLQSPLPCLQSPF 376 6679999*************************************************************99999999999999999988888875 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00013 Herpes_BLLF1 499 teskapdmtsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttpt 566 +s p + sp ++ p p sp p++ p p sp sp s + p+ sp p++ +p T172828_3 372 LQSPFPSLQSPFPSLQIPLPSLQSPFPSLQRPFPSLQSPLPSLRSPLSLPSEPSSSLQSPLPSLRSPL 439 46777888899999999999999999999999999999988889999999999999999988887775 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.00055 4.5 87 164 .. 275 346 .. 271 369 .. 0.68 2 ? 2.4 0.0 0.013 1.1e+02 76 137 .. 390 465 .. 338 485 .. 0.63 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00055 IncA 87 esrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrs 164 +s+l + l l++ l +l+ + +l+ l slq+ + s++s l+sl++++ +l++ + l+ + v +l+s T172828_3 275 QSHLPSFQSPLPSLQSPLPSLQHPFPSLQSPLPSLQHPFPSLQSPLLSLQRPFPSLQSPLPSLQ------CSVPSLQS 346 4555555555566677777777777777777777778888888888888888888888888888......44444444 PP == domain 2 score: 2.4 bits; conditional E-value: 0.013 IncA 76 e..............srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrleslee 137 ++lq l +l+s l+ e + l++ l +l + l++ e slq++++s++s l sl T172828_3 390 LpslqspfpslqrpfPSLQSPLPSLRSPLSLPSEPSSSLQSPLPSLRSPLSLPPEPSSSLQSLFSSLQSPLSSLWN 465 1333444444444445555666666666665555555666666666666666666666666666666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.67 # Mc/sec: 2245.97 // Query: T184556_1 [L=782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 3857.19 // Query: T184556_2 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 3723.85 // Query: T184556_3 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4468.62 // Query: T069599_1 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 3289.95 // Query: T069599_2 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-18 64.4 0.2 5.8e-18 64.4 0.2 2.1 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.5 0.066 1.1e+03 7 35 .. 439 466 .. 436 467 .. 0.73 2 ! 64.4 0.2 3.6e-22 5.8e-18 9 60 .. 568 616 .. 567 618 .. 0.97 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.066 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltV 35 +q +k+ +++ + k el++ k+m +V T069599_2 439 TPSQFKKKERKKESFAK-ELRALKMMSIV 466 45677777888888887.59999999887 PP == domain 2 score: 64.4 bits; conditional E-value: 3.6e-22 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa 60 aqWl +e+p+++pk hqk vm+tVwWsa++li+y f +p+etitse+Ya T069599_2 568 AQWLGPEEAPQHFPK---HQKQVMVTVWWSAASLIHYGFPNPSETITSEKYA 616 7*************7...8********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 3743.74 // Query: T069599_3 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.64 # Mc/sec: 3392.77 // Query: T171722_1 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.53 # Mc/sec: 1765.08 // Query: T171722_2 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.64 # Mc/sec: 1461.71 // Query: T171722_3 [L=326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.66 # Mc/sec: 1413.08 // Query: T333823_1 [L=4113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.72 # Mc/sec: 16342.49 // Query: T333823_2 [L=4112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-17 63.3 0.0 4e-17 62.4 0.0 1.4 1 rve Integrase core domain 5e-17 62.0 0.0 7.8e-17 61.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 5.8e-14 52.4 0.0 1.3e-13 51.2 0.0 1.6 2 RNase_H RNase H 2.4e-12 46.5 0.1 8.6e-12 44.7 0.0 1.8 2 Gag_MA Matrix protein (MA), p15 0.00084 19.4 2.1 0.0019 18.3 2.1 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.4 0.0 1.2e-20 4e-17 6 117 .. 2689 2796 .. 2685 2797 .. 0.95 Alignments for each domain: == domain 1 score: 62.4 bits; conditional E-value: 1.2e-20 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 e + vD+t+++ + +g+ y+lv++ +fs+++ a++++ e +a++v+++l + + ++g p+++ sDng+++ ++ ++++ + l+i+++++ +++pq T333823_2 2689 ENLLVDFTELP--RARGYQYMLVFVCTFSGWVKAFPTRIE-KAQEVTRVLLKDIIPRFGL-PLTLGSDNGPAFMAEVVQQLSQLLKIKWKLHIVYHPQ 2782 56779***999..77779**********************.******************9.************************************* PP rve 104 dnGkvErfnrtlkd 117 + GkvE +n+tlk+ T333823_2 2783 SSGKVEWMNQTLKH 2796 ************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.4 0.0 2.4e-20 7.8e-17 1 220 [. 2002 2165 .. 2002 2167 .. 0.94 Alignments for each domain: == domain 1 score: 61.4 bits; conditional E-value: 2.4e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 ++K++ g++Rp+ d+ ++nk+++ l+ +p+ ++ s + a +++ lDlk+aF+ +l+ +++++af+ T333823_2 2002 VQKPS-GGFRPV----QDLWDINKVTVT---------LHAVLPNPYTMTSH------------IPAHAAWFSCLDLKGAFFCLRLAPMSQPIFAFQWG 2073 57999.*****7....7***********.........99999999999444............56789****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT- CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesgl 196 ++++++++lpqG+++SP++f ++ + l+ + +++ll+Y+ D+l+++ ++e++ + +++ l ++g+ T333823_2 2074 -------------------------GTQFTWTRLPQGFKNSPTIFEEALASDLKAFVPPNDKCVLLQYIGDLLFAAPTEEDCFQGTKDLLCLLWKAGY 2146 .........................99*******************999998888888779************************************* PP -BEGGG-EEE.....ESSEEETTE CS RVT_1 197 kinpeKtklvlfsgkseevkyLGv 220 k+++eK +++ +++v+yLG+ T333823_2 2147 KMSKEKAQVC-----AKRVRYLGF 2165 **********.....9*******8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.1 0.0 4.7 1.5e+04 6 16 .. 1242 1252 .. 1241 1254 .. 0.86 2 ! 51.2 0.0 4.1e-17 1.3e-13 49 142 .. 2464 2558 .. 2425 2559 .. 0.85 Alignments for each domain: == domain 1 score: -4.1 bits; conditional E-value: 4.7 EEEEEEEECTT CS RNase_H 6 vYtDGsclgns 16 +Y DGs++ n+ T333823_2 1242 LYMDGSSFANP 1252 8******9997 PP == domain 2 score: 51.2 bits; conditional E-value: 4.1e-17 HHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHH CS RNase_H 49 sAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAke 140 +A+ aL a ++ +vniytDSkY++++++ h+++++++ t+ +k++k+ e+ +ll+++ + kv + h+kgH++ +kgN+ aDr A++ T333823_2 2464 IALNRALLvA--KGRTVNIYTDSKYAFATLHA--HGAIYKERGLlTAGGKEIKE-EILQLLEAVWAPDKVAVIHCKGHQTRggieAKGNRKADREARQ 2556 6888999966..999*************9998..77766666655999999**9.***********************998889989*********** PP HH CS RNase_H 141 aa 142 aa T333823_2 2557 AA 2558 97 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.7 0.0 2.6e-15 8.6e-12 2 84 .. 362 442 .. 359 453 .. 0.92 2 ? -1.9 0.0 0.72 2.4e+03 75 104 .. 839 868 .. 831 873 .. 0.77 Alignments for each domain: == domain 1 score: 44.7 bits; conditional E-value: 2.6e-15 XX---HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHH CS Gag_MA 2 qtvstPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivt 84 q++ tPL +l++f r+ + +v + +kl+tlC+ +W +l+vgWP+eG+ d ++++kv +kv ++ hpD Yi T333823_2 362 QSKPTPLGPMLKKFFFKREFKGDYGVSMTPGKLRTLCEIDWLALEVGWPPEGSLDRSLVSKVWHKVTCK--PKHPDRFLYIDS 442 66779*************************************************************987..77*******965 PP == domain 2 score: -1.9 bits; conditional E-value: 0.72 -GGGHHHHHHHHHHHHS--TTT-XXXXXXX CS Gag_MA 75 hpDqvpYivtWrsLvedPPpwvkpflpskp 104 + q++ + tW++ d Pp k l+s + T333823_2 839 KQKQLACLCTWQARGPDCPPSTKVVLQSAR 868 467888899999999999999988887765 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 2.1 5.9e-07 0.0019 1 39 [] 2628 2666 .. 2628 2666 .. 0.99 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 5.9e-07 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H+ tH+G + l++l+ +++++ ++++ + V+++C +C+ T333823_2 2628 HQGTHMGKTALETLVGWHFYVPCLTAITRAVCEQCLTCA 2666 99************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.48u 0.37s 00:00:01.85 Elapsed: 00:00:00.71 # Mc/sec: 16568.64 // Query: T333823_3 [L=4112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-37 128.4 0.4 3.6e-37 127.8 0.4 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.8 0.4 2.2e-41 3.6e-37 8 208 .. 1513 1714 .. 1511 1717 .. 0.94 Alignments for each domain: == domain 1 score: 127.8 bits; conditional E-value: 2.2e-41 Gag_p30 8 sdlynwktnnpsfsedpqkltaliesillthqptwddcq.qllqtlltteerqrvllearknvpgedgrptqlpne.vdeafpltrpdwdyetaegre 103 +dl nwk+ ps++e+pq+l + +si+lth+ptw dcq ll +l+ te+r+r+ a + ++ + t+ + ++ fp p+wd + a + T333823_3 1513 TDLLNWKQLTPSYTEKPQALIDFRQSIFLTHNPTWPDCQ*LLL-ILFNTEKRRRITQAALQWLESNAPEGTNDVKR*AQKRFPEADPNWDPNQAGELQ 1609 79************************************77665.89********99999999999888888777767789****************** PP Gag_p30 104 slklyrqlllaglrgaarrptnlakvkevvqgkee.spaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvk 200 +l+ yr++ l g+++ ++ +nl +v ev q k + sp+ f e l eayr yt +d ed ++++ v ++f+ q+ dir+klq+leg++++ +++l++ T333823_3 1610 NLHRYREAPLNGIKARRKKAANLGEVSEVCQ-KVD*SPSEFYETLCEAYRLYTSFDLEDVGNQCMVNVAFMGQAQGDIRQKLQKLEGFEAMYITQLIQ 1706 *****************************99.67899************************************************************* PP Gag_p30 201 eaekvynk 208 a kv+ T333823_3 1707 VATKVFVN 1714 *****975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.35s 00:00:01.79 Elapsed: 00:00:00.92 # Mc/sec: 12786.67 // Query: T199621_1 [L=4923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.40s 00:00:01.89 Elapsed: 00:00:00.72 # Mc/sec: 19560.93 // Query: T199621_2 [L=4923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.42s 00:00:02.09 Elapsed: 00:00:00.78 # Mc/sec: 18056.24 // Query: T199621_3 [L=4922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0042 16.6 0.0 0.0086 15.6 0.0 1.4 1 RabGAP-TBC Rab-GTPase-TBC domain Domain annotation for each model (and alignments): >> RabGAP-TBC Rab-GTPase-TBC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 5.3e-07 0.0086 92 122 .. 2779 2810 .. 2777 2818 .. 0.85 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 5.3e-07 RabGAP-TBC 92 GmndivaplllvsldeeeaFwcfvsLl..ekyk 122 +m+ + a+ll v+l+ee++Fw++ +L+ e+++ T199621_3 2779 DMSCLTAILL-VYLPEEDTFWALDQLMaeERHS 2810 79********.****************655444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.76 # Mc/sec: 18527.64 // Query: T257776_1 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.59 # Mc/sec: 10240.80 // Query: T257776_2 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.5 4.7 2.6 7.6 4.7 1.4 1 Baculo_11_kDa Baculovirus 11 kDa family Domain annotation for each model (and alignments): >> Baculo_11_kDa Baculovirus 11 kDa family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 4.7 0.00016 2.6 36 82 .. 1332 1378 .. 1326 1380 .. 0.81 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00016 Baculo_11_kDa 36 FvLvicglvvfvvivlfilLlvvilknaeaeeaekekrektllaNld 82 v+v+ ++v++vv+++ ++++ ++ a ++++++ ++++ ll+ l+ T257776_2 1332 TVVVVVTVVMVVVVMMVVVVVAAMMVVAATSSIHHGQYRRCLLSSLG 1378 57888888888888888888889999999999999999999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 839 (0.0514535); expected 326.1 (0.02) Passed bias filter: 369 (0.0226297); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.62 # Mc/sec: 9740.66 // Query: T257776_3 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 8881.19 // Query: T018766_1 [L=6339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-16 60.2 0.9 1.5e-08 34.3 0.3 2.3 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 2.4e-16 59.9 7.5 4.3e-16 59.1 7.5 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.0 2.5e-09 2e-05 2 29 .. 1664 1691 .. 1663 1693 .. 0.91 2 ! 34.3 0.3 1.8e-12 1.5e-08 185 228 .. 1833 1876 .. 1818 1882 .. 0.93 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 2.5e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018766_1 1664 EIAWRQGKRKAEKDEMVSARFFLALSPP 1691 679**********************975 PP == domain 2 score: 34.3 bits; conditional E-value: 1.8e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018766_1 1833 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 1876 679**************************************998 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.1 7.5 5.3e-20 4.3e-16 3 69 .. 180 245 .. 179 247 .. 0.93 Alignments for each domain: == domain 1 score: 59.1 bits; conditional E-value: 5.3e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018766_1 180 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 245 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.11u 0.40s 00:00:02.50 Elapsed: 00:00:00.79 # Mc/sec: 22955.44 // Query: T018766_2 [L=6339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.38s 00:00:02.23 Elapsed: 00:00:00.81 # Mc/sec: 22388.64 // Query: T018766_3 [L=6338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-13 49.3 0.4 1.7e-12 47.2 0.1 1.9 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 7.6e-09 35.8 0.0 1.3e-08 35.0 0.0 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.071 5.8e+02 39 55 .. 1701 1717 .. 1696 1724 .. 0.87 2 ! 47.2 0.1 2.1e-16 1.7e-12 102 175 .. 1750 1823 .. 1742 1832 .. 0.92 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.071 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 +k++ fk ftkkmd+ T018766_3 1701 KSKIDGFKCFTKKMDNR 1717 579************96 PP == domain 2 score: 47.2 bits; conditional E-value: 2.1e-16 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++ + ++e+fa q++kDl++ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018766_3 1750 ELDQAIHFSIDASHSVSELFASQSRKDLDPAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 1823 789999999***********************************************************987654 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.0 0.0 1.6e-12 1.3e-08 64 107 .. 239 281 .. 235 283 .. 0.95 Alignments for each domain: == domain 1 score: 35.0 bits; conditional E-value: 1.6e-12 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018766_3 239 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 281 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.99u 0.41s 00:00:02.40 Elapsed: 00:00:00.84 # Mc/sec: 21585.64 // Query: T198204_1 [L=3127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.60 # Mc/sec: 14909.69 // Query: T198204_2 [L=3126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.79 # Mc/sec: 11320.20 // Query: T198204_3 [L=3126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.1 0.1 0.27 10.8 0.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.1 1.7e-05 0.27 1 17 [. 2335 2351 .. 2335 2351 .. 0.92 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 1.7e-05 DUF1725 1 kFagKWMELEnIILSEi 17 +F g+ M LE+IILS++ T198204_3 2335 SFSGTLMNLETIILSKV 2351 6999***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:00.73 # Mc/sec: 12250.62 // Query: T227190_1 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.39s 00:00:02.11 Elapsed: 00:00:00.79 # Mc/sec: 19330.52 // Query: T227190_2 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.36s 00:00:02.02 Elapsed: 00:00:00.72 # Mc/sec: 21209.88 // Query: T227190_3 [L=5338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.70 # Mc/sec: 21815.87 // Query: T156368_1 [L=2641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 13255.18 // Query: T156368_2 [L=2641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 12805.85 // Query: T156368_3 [L=2641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.50 # Mc/sec: 15110.90 // Query: T369328_1 [L=3227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16485.53 // Query: T369328_2 [L=3227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 16196.31 // Query: T369328_3 [L=3227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 16196.31 // Query: T069796_1 [L=923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5177.54 // Query: T069796_2 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 5072.47 // Query: T069796_3 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-34 118.3 0.7 3.1e-09 37.2 0.0 5.6 5 Ig_3 Immunoglobulin domain 3.7e-27 94.4 0.0 6.3e-08 32.7 0.1 5.4 5 Ig_2 Immunoglobulin domain 2.7e-16 59.4 0.1 0.00049 20.1 0.0 5.8 5 ig Immunoglobulin domain 5.2e-13 48.7 0.0 2.9e-06 27.1 0.0 4.8 4 I-set Immunoglobulin I-set domain 8e-07 28.9 13.7 0.056 13.4 0.0 6.2 6 C2-set_2 CD80-like C2-set immunoglobulin domain 2e-06 27.9 0.0 8.5e-06 25.9 0.0 2.1 2 fn3 Fibronectin type III domain 0.0059 16.6 3.0 22 5.1 0.0 4.6 5 V-set Immunoglobulin V-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.0 5e-09 1.2e-05 1 79 [] 275 347 .. 275 347 .. 0.85 2 ! 37.2 0.0 1.3e-12 3.1e-09 1 79 [] 367 438 .. 367 438 .. 0.91 3 ! 7.5 0.2 0.0024 5.7 16 49 .. 469 500 .. 456 523 .. 0.66 4 ! 10.7 0.0 0.00025 0.58 16 61 .. 553 592 .. 544 611 .. 0.60 5 ! 30.4 0.0 1.7e-10 4e-07 2 79 .] 627 707 .. 626 707 .. 0.83 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 5e-09 EEE--CCCSEEEEETTS-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstvvtegesvtLtCeaegnppp.titWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kP++ +++ s eg sv+ tC + + +p t+ W++ + + + ++ ++++ v++++ G Y C+AsN T069796_3 275 KPQVRLSNPSP--VEGASVVATCAVREGTEPvTFAWQHRAPR--GLGEA---LVGVTEPLFQLDPVNRTHLGWYMCSASN 347 8****888777..5***********8888888******9985..32223...46888899*******************9 PP == domain 2 score: 37.2 bits; conditional E-value: 1.3e-12 EEE--CCCSEEE.....EETTS-EEE----EEES--EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstv.....vtegesvtLtCeaegnppptitWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kPvIt +p + + e e+vtL+C a++npp ++ W+++ + +++t + +++i ++ + ++G YtC A+N T069796_3 367 KPVITMEPLGLTeegfwASEREEVTLSCLAASNPPSHYVWLRDHT---QVHT---------GPTYVIARAGRVHTGLYTCLARN 438 8****999998889999*************999999*********...5334.........4699******************9 PP == domain 3 score: 7.5 bits; conditional E-value: 0.0024 TS-EEE----.EEES--EEEEEE..-...TTSS-E CS Ig_3 16 gesvtLtCea.egnppptitWykngkklssnstss 49 e vtL C + +g pp +++W ++ +++t + T069796_3 469 PEAVTLLCAWpGGLPPAQLQWEGPQG---PGPTAP 500 468*******5555555*****9999...555553 PP == domain 4 score: 10.7 bits; conditional E-value: 0.00025 TS.-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEE CS Ig_3 16 ge.svtLtCeaegnppp.titWykngkklssnstsssissegssssLt 61 g+ ++L+Ce+ g+ pp t+ W+ ++++ + ++ss ++ T069796_3 553 GDqFIMLSCEWPGGEPPaTLGWLDEQQQ--PL--G----GSSSSMAVH 592 442567*****6666666*******995..31..1....122333333 PP == domain 5 score: 30.4 bits; conditional E-value: 1.7e-10 EE--CCCSEEEEETTS-EEE----EEES--.EEEEEE..-....TTSS-EE....SSEEEETTEEEESS--GGG.-EEEEEEEE- CS Ig_3 2 PvItvppsstvvtegesvtLtCeaegnppp.titWykngkk.lssnstsss....issegssssLtisnvtksd.sGtYtCvAsN 79 P++ v + ++v eg ++ L+C+ g+ pp ++ W+ +++ + ++ + + eg + +L i ++++ + +GtY+CvA+N T069796_3 627 PQLDVAEPRVSVLEGGEAWLECSLRGGTPPaQLLWLGPQQQkVDPG----TsgfmLHPEGAQLRLGIYDADPAHhRGTYQCVARN 707 677766777789************7777777********9743332....2345688999999********9988*********9 PP >> Ig_2 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.0 0.00035 0.81 1 67 [. 275 349 .. 275 359 .. 0.80 2 ! 32.7 0.1 2.7e-11 6.3e-08 1 74 [. 367 447 .. 367 453 .. 0.86 3 ! 11.2 0.0 0.00014 0.33 15 66 .. 470 525 .. 457 531 .. 0.80 4 ! 11.6 0.0 0.00011 0.25 11 64 .. 550 610 .. 541 619 .. 0.78 5 ! 21.4 0.0 9.3e-08 0.00022 2 79 .] 627 720 .. 626 720 .. 0.74 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00035 Ig_2 1 kpvlrpsptvvtegspvtLtCsas.gnpppkyqwykgg.....eain.ssqn.ffinavsaedsgtYtCrasntk 67 kp+ r s+ eg +v tC++ g +p+++ w++ ea+ + f + v+ ++ g Y C+asn+ T069796_3 275 KPQVRLSNPSPVEGASVVATCAVReGTEPVTFAWQHRAprglgEALVgVTEPlFQLDPVNRTHLGWYMCSASNSV 349 688888888889**********9989999******88887777665543433466788**************964 PP == domain 2 score: 32.7 bits; conditional E-value: 2.7e-11 Ig_2 1 kpvlrpsp...tv....vtegspvtLtCsasgnpppkyqwykggeainssqnffinavsaedsgtYtCrasntkgsevsrp 74 kpv++ +p t+ +e+++vtL+C a +npp y w ++++ + +++ ++i ++ + g YtC a+n++ +++++ T069796_3 367 KPVITMEPlglTEegfwASEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYVIARAGRVHTGLYTCLARNSYLDTRTQT 447 6888888877655777789*********************************888*****************987665544 PP == domain 3 score: 11.2 bits; conditional E-value: 0.00014 Ig_2 15 spvtLtCsas.gnpppkyqwykggeainssqn...ffinavsaedsgtYtCrasnt 66 + vtL C+++ g pp+++qw + + ++ ++ + a+++ ++ +tC+ +++ T069796_3 470 EAVTLLCAWPgGLPPAQLQWEGPQGPGPTAPSnvtWSHAAAQLPSGSVFTCTGQHP 525 789*******77888*******99999988775443447788999999***98875 PP == domain 4 score: 11.6 bits; conditional E-value: 0.00011 Ig_2 11 vtegspv.tLtCsas.gnpppkyqwykgg.eainssqn...ffinavsaedsgt.YtCras 64 t g+ + L+C+++ g pp+++ w + +++ s + +++++++++ +g+ +tCr + T069796_3 550 ATMGDQFiMLSCEWPgGEPPATLGWLDEQqQPLGGSSSsmaVHLLQAQEDLAGReFTCRGT 610 5556555378*****667779****9777699995444466788**************975 PP == domain 5 score: 21.4 bits; conditional E-value: 9.3e-08 Ig_2 2 pvlrpsp..tvvtegspvtLtCsas.gnpppkyqwykgg.eainssqn..ffina..........vs.aedsgtYtCrasntkgsevsrpveltv 79 p+l++ v eg + +L Cs g pp+++ w + + + ++++ +++++ ++ a+++gtY+C+a+n +++ +s++v l+v T069796_3 627 PQLDVAEprVSVLEGGEAWLECSLRgGTPPAQLLWLGPQqQKVDPGTSgfMLHPEgaqlrlgiydADpAHHRGTYQCVARN-AVGNSSQSVLLEV 720 7788444244589999*******8878999******888777776666654444455555565446689************.8899999987765 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 2.5e-06 0.0059 10 77 .. 287 348 .. 281 351 .. 0.94 2 ! 9.3 0.1 0.00049 1.1 9 77 .. 385 439 .. 383 449 .. 0.84 3 ? -2.0 0.0 1.7 3.9e+03 67 77 .. 514 525 .. 500 530 .. 0.63 4 ? 4.8 0.0 0.012 29 16 76 .. 559 611 .. 552 616 .. 0.88 5 ! 20.1 0.0 2.1e-07 0.00049 2 82 .. 632 713 .. 631 717 .. 0.88 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 2.5e-06 TTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 10 eGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 eG s+ tC v+++t+p+++ W++ + ++ ++ +++++v + + G Y+C ++ns T069796_3 287 EGASVVATCAVREGTEPVTFAWQHRAPRGLGEAL------VGVTEPLFQLDPVNRTHLGWYMCSASNS 348 6889999***************************......999999********************98 PP == domain 2 score: 9.3 bits; conditional E-value: 0.00049 ETTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 9 leGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 +e e +tL+C + +++p ++ W ++ ++ +++ + i ++ + ++G YtC + ns T069796_3 385 SEREEVTLSCLAA-SNPPSHYVWLRDHTQVHTGPT-------------YVIARAGRVHTGLYTCLARNS 439 67899********.************999999988.............777777777777888877775 PP == domain 3 score: -2.0 bits; conditional E-value: 1.7 -E.EEEEEEEET CS ig 67 aG.tYtCevnns 77 +G +tC+++++ T069796_3 514 SGsVFTCTGQHP 525 444566666665 PP == domain 4 score: 4.8 bits; conditional E-value: 0.012 EEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-E.EEEEEEEE CS ig 16 LtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaG.tYtCevnn 76 L+C+ +++p+++ W e+q+ ++ +s +++ +++e+ aG ++tC++ + T069796_3 559 LSCEWPGGEPPATLGWLDEQQQPLGGSS---------SSMAVHLLQAQEDLAGrEFTCRGTH 611 7888888899999999999999999988.........9999*****************9988 PP == domain 5 score: 20.1 bits; conditional E-value: 2.1e-07 CESEEEEETTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-E.EEEEEEEETTEEEE CS ig 2 akplvlvleGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaG.tYtCevnnsgssvt 82 a p v+vleG+ a+L Cs + +t+p+++ W +q+k + ++ + + + +l i + + ++ tY C++ n+ ++++ T069796_3 632 AEPRVSVLEGGEAWLECSLRGGTPPAQLLWLGPQQQKVDPGTSGFMLHPEGAQLRLGIYDADPAHHRgTYQCVARNAVGNSS 713 567899**********************************9977777788888899999999988766******99999876 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.9 0.0 0.0052 12 14 82 .. 287 352 .. 277 361 .. 0.77 2 ! 8.9 0.0 0.0006 1.4 13 86 .. 385 447 .. 380 453 .. 0.70 3 ? -2.9 0.0 2.8 6.5e+03 19 41 .. 558 582 .. 550 593 .. 0.68 4 ! 27.1 0.0 1.3e-09 2.9e-06 6 90 .] 632 720 .. 627 720 .. 0.87 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0052 TTS-EEEEEEE.ECSSS-EEEEEET.TCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSEEE CS I-set 14 eGesvelectv.eGepepsvsWakd.gselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsagka 82 eG sv +c v eG+++ ++ W+++ + l + v v+e + ++ v++ G Y c a+ns+ + T069796_3 287 EGASVVATCAVrEGTEPVTFAWQHRaPRGLGE---ALVGVTE--PLFQLDPVNRTHLGWYMCSASNSVNRL 352 78889999999446788899999985555553...4555555..67999******************8765 PP == domain 2 score: 8.9 bits; conditional E-value: 0.0006 ETTS-EEEEEEEECSSS-EEEEEETTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSEEEEEEE CS I-set 13 seGesvelectveGepepsvsWakdgselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsagkaeaka 86 se e+v+l+c + +p+ + W++d +++++ ++ I ++ + +G Ytc a+ns+ +++ T069796_3 385 SEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYV-----------IARAGRVHTGLYTCLARNSYLDTRTQT 447 677889999999999999999999988888765555...........555557778999999999943333333 PP == domain 3 score: -2.9 bits; conditional E-value: 2.8 EEEEEEE.CSSS-EEEEEET.TCB- CS I-set 19 electve.GepepsvsWakd.gsel 41 l+c+ Gep+ + W+ + +++l T069796_3 558 MLSCEWPgGEPPATLGWLDEqQQPL 582 5677765157889999999855555 PP == domain 4 score: 27.1 bits; conditional E-value: 1.3e-09 S-CEEEEETTS-EEEEEEEECS.SS-EEEEEET.TCB-ST.SSSEEEEEETTEEEEEESSB-GG.GGEEEEEEEEETSEEEEEEEEEEE CS I-set 6 klkdvevseGesvelectveGe.pepsvsWakd.gselks.sqrvkvtveeaeytLtIsnvevs.DeGkYtckatnsagkaeakaeLkV 90 +v v eG ++ lec+ +G p+ + W+ ++++ + ++ + ++ e+a+ +L I++++++ G+Y+c+a+n +g++++++ L+V T069796_3 632 AEPRVSVLEGGEAWLECSLRGGtPPAQLLWLGPqQQKVDPgTSGFMLHPEGAQLRLGIYDADPAhHRGTYQCVARNAVGNSSQSVLLEV 720 556899*************9744999******9888898877889999999**********986268******************9987 PP >> C2-set_2 CD80-like C2-set immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.1 0.0019 4.4 6 37 .. 276 310 .. 272 319 .. 0.81 2 ? 4.1 0.0 0.019 45 9 42 .. 381 413 .. 368 445 .. 0.76 3 ? 3.4 0.4 0.031 72 17 38 .. 471 492 .. 457 511 .. 0.81 4 ? -2.0 0.0 1.5 3.4e+03 73 86 .. 514 527 .. 502 530 .. 0.80 5 ? 4.3 0.4 0.017 39 19 42 .. 558 581 .. 548 613 .. 0.78 6 ! 13.4 0.0 2.4e-05 0.056 4 41 .. 633 667 .. 630 683 .. 0.84 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0019 SSSEEETT...-SEEEEEEEEEEEEBS--EEEEEE CS C2-set_2 6 naslleae...eneevvatCvsaggkPapqitWyl 37 ++ +l+++ e++ vvatC +++g +++ +W+ T069796_3 276 PQVRLSNPspvEGASVVATCAVREGTEPVTFAWQH 310 44555555578899*******************86 PP == domain 2 score: 4.1 bits; conditional E-value: 0.019 EEETT-SEEEEEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 9 lleaeeneevvatCvsaggkPapqitWylngkpl 42 +a e eev++ C a ++P+ + W+++ ++ T069796_3 381 GFWASEREEVTLSC-LAASNPPSHYVWLRDHTQV 413 34444899******.6778999******998877 PP == domain 3 score: 3.4 bits; conditional E-value: 0.031 EEEEEEEEEEEBS--EEEEEET CS C2-set_2 17 evvatCvsaggkPapqitWyln 38 v++ C gg P++q++W + T069796_3 471 AVTLLCAWPGGLPPAQLQWEGP 492 567789999**********875 PP == domain 4 score: -2.0 bits; conditional E-value: 1.5 TT-EEEEEEEETTC CS C2-set_2 73 hgqsltCsvsyeal 86 +g+ +tC +++al T069796_3 514 SGSVFTCTGQHPAL 527 57789999999987 PP == domain 5 score: 4.3 bits; conditional E-value: 0.017 EEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 19 vatCvsaggkPapqitWylngkpl 42 + C gg+P++++ W+ + ++ T069796_3 558 MLSCEWPGGEPPATLGWLDEQQQP 581 56788899*********9887764 PP == domain 6 score: 13.4 bits; conditional E-value: 2.4e-05 EESSSEEETT-SEEEEEEEEEEEEBS--EEEEEETTEE CS C2-set_2 4 epnaslleaeeneevvatCvsaggkPapqitWylngkp 41 ep s le+ e ++C+ +gg P++q+ W++ ++ T069796_3 633 EPRVSVLEGG---EAWLECSLRGGTPPAQLLWLGPQQQ 667 6777888888...999****************987766 PP >> fn3 Fibronectin type III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 2.1 4.8e+03 17 36 .. 486 504 .. 485 512 .. 0.67 2 ! 25.9 0.0 3.7e-09 8.5e-06 1 85 [] 724 815 .. 724 815 .. 0.86 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 2.1 EEEEE-CSSSSSTECEEEEE CS fn3 17 tvsWeppkdgggpitgYeve 36 +++We p +g gp +v+ T069796_3 486 QLQWEGP-QGPGPTAPSNVT 504 7899999.466665555555 PP == domain 2 score: 25.9 bits; conditional E-value: 3.7e-09 TSBSEEEEEEE....TTSEEEEEEE-CSSSSSTECEEEEEEEETTSSS.....TEEEEEECSTCSEEEEESSSTTEEEEEEEEEEETTEEEEEE CS fn3 1 saPsnlsvsev....tstsltvsWeppkdgggpitgYeveyrekgsee.....ewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 +aP n+++s ++++++W g g++tg+ v+ + + + e+ ++ + ++ l gL pg Y +r+ a+n+++ g++s T069796_3 724 PAPPNVTISRLtygrHRREVQLQWAIL--GPGNLTGFLVQRKASALGPgagawETAASDIEPESRGRRLGGLDPGVLYAFRILALNHHTAGHPS 815 6899999999977777899********..9***********777666677876555555777777**************************998 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 2.4 5.5e+03 77 97 .. 330 349 .. 327 359 .. 0.73 2 ! 5.1 0.0 0.0095 22 5 48 .. 381 423 .. 378 427 .. 0.81 3 ? 5.0 0.1 0.01 24 84 108 .. 428 453 .. 421 454 .. 0.81 4 ? -0.8 0.0 0.65 1.5e+03 4 23 .. 634 653 .. 632 672 .. 0.76 5 ? 3.0 0.0 0.044 1e+02 84 108 .. 697 720 .. 662 721 .. 0.71 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.4 ESSESGGG-EEEEEEEESSSE CS V-set 77 iqnlqlsDsGtYfCavvssge 97 + +++ + G Y C+ s++ T069796_3 330 LDPVNRTHLGWYMCSA-SNSV 349 677889999*****94.4444 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0095 EEEEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS..CEEEEEEE CS V-set 5 svtvaeGesvtLsCtlssseseeslsiyWyrqppgk..epeelily 48 +++e e+vtLsC s+ + + W+r+ ++ +p+++i++ T069796_3 381 GFWASEREEVTLSCLAASN---PPSHYVWLRDHTQVhtGPTYVIAR 423 5789999*******77766...999999999999877888888876 PP == domain 3 score: 5.0 bits; conditional E-value: 0.01 G-EEEEEEEESSSEEE.EEEEEEEEE CS V-set 84 DsGtYfCavvssgegv.fgsgtrLtV 108 ++G Y+C ++s+ ++ ++++++Lt+ T069796_3 428 HTGLYTCLARNSYLDTrTQTTVQLTI 453 89******9666666659****9997 PP == domain 4 score: -0.8 bits; conditional E-value: 0.65 SEEEEETTSEEEEEEEESSS CS V-set 4 ksvtvaeGesvtLsCtlsss 23 + v+v eG+++ L C+l T069796_3 634 PRVSVLEGGEAWLECSLRGG 653 56999**********98865 PP == domain 5 score: 3.0 bits; conditional E-value: 0.044 G-EEEEEEEESSSEEEEEEEEEEEE CS V-set 84 DsGtYfCavvssgegvfgsgtrLtV 108 + GtY+C + g++++ + L+V T069796_3 697 HRGTYQCV-ARNAVGNSSQSVLLEV 720 57******.7888888888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 5072.47 // Query: T293104_1 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4807.32 // Query: T293104_2 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.22s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 4807.32 // Query: T293104_3 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 5210.36 // Query: T177788_1 [L=3495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 685 (0.0420091); expected 326.1 (0.02) Passed bias filter: 304 (0.0186434); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.56 # Mc/sec: 17541.40 // Query: T177788_2 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 17536.39 // Query: T177788_3 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.30s 00:00:01.52 Elapsed: 00:00:00.60 # Mc/sec: 16659.57 // Query: T230564_1 [L=3288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-69 234.1 1.3 1.8e-69 233.6 0.3 1.7 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 2.5e-27 94.4 0.2 5.1e-27 93.4 0.2 1.5 1 Gag_p10 Retroviral GAG p10 protein 1.1e-15 57.0 0.0 2.4e-15 55.8 0.0 1.6 1 RVT_thumb Reverse transcriptase thumb domain 4.8e-10 39.1 0.0 9.1e-10 38.2 0.0 1.5 1 dUTPase dUTPase 2.4e-06 26.6 1.2 4.5e-06 25.7 1.2 1.4 1 IN_DBD_C Integrase DNA binding domain 4.1e-06 26.5 2.5 1e-05 25.2 2.5 1.7 1 zf-CCHC Zinc knuckle 1.7e-05 24.6 0.1 3e-05 23.8 0.1 1.3 1 GP41 Retroviral envelope protein 0.0015 18.0 0.1 0.0026 17.2 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 0.078 12.7 2.2 0.098 12.4 0.4 2.1 2 zf-CCHC_6 Zinc knuckle 0.15 11.7 1.1 0.32 10.6 1.1 1.5 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.6 0.3 1.1e-72 1.8e-69 1 205 [] 632 845 .. 632 845 .. 0.95 2 ? -2.0 0.0 1.5 2.4e+03 20 61 .. 1985 2027 .. 1979 2035 .. 0.82 Alignments for each domain: == domain 1 score: 233.6 bits; conditional E-value: 1.1e-72 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++v+qyg +sp++++l+d++a++ +p+d+e+l+++ ++s+ l+ +++w+++++e+ +r n+a ++++i++d+llgtg+ ++++q+ T230564_1 632 MKMLKDIKEGVKQYGSNSPYIRTLLDSIAHGNrlTPYDWEILAKSslSSSQYLQfKTWWIDGVQEQ--VRKNQATkPTVNIDADQLLGTGPnwSTINQQS 729 8******************************999**********976677778899**********..66666666***************99999**** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knstl.ed 187 +mqn e++eqvr+++l+a+ ki+++g+ +++irQG+kEpy+dfvaRl++a++k+++d++a +v+v+ +ayeNANpeCq+++kpl+ ++ ++ + T230564_1 730 VMQN-EAIEQVRAICLRAWGKIQDPGTAF-PINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPECQSAIKPLKgkvpAGVDViTE 827 ****.************************.9*********************************************************9998788888** PP Gag_p24 188 mlraCqgvggavhkarvl 205 +++aC+g+gga+hka+++ T230564_1 828 YVKACDGIGGAMHKAMLM 845 ****************98 PP == domain 2 score: -2.0 bits; conditional E-value: 1.5 Gag_p24 20 eviqlidalaeqalpkdlekllar.vgssqlaaqlwkeeleee 61 +++++++ +q ++ ++l+ + + ++++ +wk++ + T230564_1 1985 YTLNVLNIYRNQTTTSAEQHLTGKrNSPHEGKLIWWKDNKNKT 2027 88999999999**9999999996547789999****9987766 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.4 0.2 3.1e-30 5.1e-27 3 84 .] 281 361 .. 279 361 .. 0.97 Alignments for each domain: == domain 1 score: 93.4 bits; conditional E-value: 3.1e-30 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G++ s+++l++++qt+e++cPWFpe+Gtldl++W+k+gkelk qa ++g+ ipl+v++ w++i++ L+ T230564_1 281 ASYLSFIKILLRRGGVRASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELK-QANREGKIIPLTVWNDWAIIKATLE 361 679*****************************************************.**********************985 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.8 0.0 1.5e-18 2.4e-15 22 65 .. 1479 1522 .. 1478 1523 .. 0.97 Alignments for each domain: == domain 1 score: 55.8 bits; conditional E-value: 1.5e-18 HHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 22 gdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 gdINWi p+lgi+t+ +++LF+ LrGds+l+s+r+LT+eA++++ T230564_1 1479 GDINWIWPTLGIPTYAMSNLFSFLRGDSELNSERTLTPEATKEI 1522 9****************************************997 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 0.0 5.6e-13 9.1e-10 6 127 .. 978 1090 .. 973 1092 .. 0.80 Alignments for each domain: == domain 1 score: 38.2 bits; conditional E-value: 5.6e-13 EBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEE..E-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 6 ptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalil..pRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + r++++s Dl++++ + + p + + +p +++ +lp+g ++ +RS+l++kg+ +++gvi sdy+G ++ l+ ++ + + + gdRiAqL+ T230564_1 978 LSRATAGSTAVDLCSTQMVFLLPgKPPQKIPRGVYGPLPEG---RVGl*GRSSLNLKGVQIHTGVIYSDYKG--GIQLVISSTVPRSANPGDRIAQLL 1070 66788888888999999999888778889999999999874...555489**********************..6666667888999*********** PP EEEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 101 fariltaeleevetlkatergeggfgs 127 + ++++ +++++ +ggfgs T230564_1 1071 LLPYVK----IG---ENKKERTGGFGS 1090 **9999....33...345555666665 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 1.2 2.8e-09 4.5e-06 7 48 .. 2020 2060 .. 2016 2062 .. 0.91 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 2.8e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T230564_1 2020 WKDNKNKTWEM-GKVITWGRGFACVSPGENQLPVWIPTRHLK 2060 99999999984.79*************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 2.5 6.4e-09 1e-05 1 17 [. 863 879 .. 863 879 .. 0.96 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 6.4e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG++GH++r Cp T230564_1 863 KKCYNCGQIGHLKRSCP 879 59**************9 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.1 1.8e-08 3e-05 34 108 .. 2436 2508 .. 2422 2518 .. 0.84 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 1.8e-08 HHHHHHHHHSSCHH...........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHH CS GP41 34 dkklearvnaleevvlalG.qevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsk 108 +k+ + ++ +l++ ++G + ++sl+ +lrC n CvT+ yn+se W+ v+ hl+g ++ ld+sk T230564_1 2436 IKNWQTKLMILDKL--SFGwERLMSLEYLFQLRCDWNTSDFCVTPQAYNESEhHWDMVRCHLQGGE--DNLTLDISK 2508 57889999999998..77746799***************************************954..444445554 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.1 1.6e-06 0.0026 117 156 .. 1350 1390 .. 1345 1400 .. 0.78 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.6e-06 .......TEEEEESB--ST-TTHHHHHHH.HHHHHHTT-T. CS RVT_1 117 rvngeesegryekkglpqGsvlSPllfnl.fmnellrelrk 156 ++n++e+ +r+++k+lpqG+ +S ++++l ++n+l+ ++++ T230564_1 1350 SLNNKEPATRFQWKVLPQGMLNSSTICQLkLCNQLETSFQT 1390 568999**********************8456777766665 PP >> zf-CCHC_6 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.4 6e-05 0.098 3 20 .. 864 879 .. 863 894 .. 0.87 2 ? -3.4 0.1 5.2 8.5e+03 16 23 .. 3055 3062 .. 3053 3064 .. 0.85 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6e-05 zf-CCHC_6 3 KCknCGAFGHtarskrCP 20 KC nCG +GH +rs CP T230564_1 864 KCYNCGQIGHLKRS--CP 879 9***********66..76 PP == domain 2 score: -3.4 bits; conditional E-value: 5.2 zf-CCHC_6 16 skrCPmKr 23 s +CP+K+ T230564_1 3055 SAFCPLKH 3062 779***97 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.1 0.00019 0.32 32 48 .. 863 879 .. 861 880 .. 0.92 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00019 zf-CCHC_4 32 rfCfiCgllGHsdkeCp 48 + C++Cg +GH ++ Cp T230564_1 863 KKCYNCGQIGHLKRSCP 879 67**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 16502.47 // Query: T230564_2 [L=3288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-24 86.9 0.0 2.3e-24 85.7 0.0 1.6 1 rve Integrase core domain 8.7e-19 66.8 7.6 8.7e-19 66.8 7.6 2.6 3 zf-CCHC_5 GAG-polyprotein viral zinc-finger 8.7e-15 54.3 2.7 2.4e-14 52.8 2.7 1.9 1 Integrase_Zn Integrase Zinc binding domain 3.6e-08 33.6 0.0 6.7e-08 32.7 0.0 1.4 1 RNase_H RNase H ------ inclusion threshold ------ 0.033 13.6 0.1 0.069 12.5 0.1 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 0.036 14.2 0.0 0.057 13.5 0.0 1.3 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.7 0.0 8.5e-28 2.3e-24 4 118 .. 1852 1961 .. 1850 1962 .. 0.95 Alignments for each domain: == domain 1 score: 85.7 bits; conditional E-value: 8.5e-28 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dv++++++++ ++++v +d++s++i+a + + e ++s+v + l + g pe+v +Dng+ y+ska+++fl++++i+++ ++ T230564_2 1852 PNVLWQMDVMHVPSFGKL--SFVHVTVDTYSHFIWATCQTGE-STSHVKRHLLSCFPVMGV--PEKVKTDNGPGYCSKAVQKFLNQWKITHTIGILYN 1944 999**********66555..**********************.9999*9999988888888..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q ++++Er+nrtlk++ T230564_2 1945 SQGQAIIERTNRTLKAQ 1961 ***************86 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.8 7.6 3.2e-22 8.7e-19 1 36 [] 898 933 .. 898 933 .. 0.97 2 ? -5.6 3.2 6 1.6e+04 4 13 .. 2712 2720 .. 2711 2722 .. 0.82 3 ? -7.7 4.3 6 1.6e+04 3 7 .. 2801 2805 .. 2800 2812 .. 0.70 Alignments for each domain: == domain 1 score: 66.8 bits; conditional E-value: 3.2e-22 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 p+glCp+C+k kHwa++Chskfdk+G+pLs+n++r+ T230564_2 898 PSGLCPKCGKAKHWANQCHSKFDKDGQPLSGNRKRG 933 79*******************************996 PP == domain 2 score: -5.6 bits; conditional E-value: 6 B-TTT-SSBS CS zf-CCHC_5 4 lCpRCkkgkH 13 lC+ C kg+H T230564_2 2712 LCL-CRKGRH 2720 677.****** PP == domain 3 score: -7.7 bits; conditional E-value: 6 -B-TT CS zf-CCHC_5 3 glCpR 7 +lCpR T230564_2 2801 NLCPR 2805 89**9 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.8 2.7 9e-18 2.4e-14 1 37 [. 1798 1834 .. 1798 1835 .. 0.99 Alignments for each domain: == domain 1 score: 52.8 bits; conditional E-value: 9e-18 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+e+H+l+H+Na +L++kF it++q ++IVq+C +Cq T230564_2 1798 AQELHALTHVNAIGLKNKFDITWKQTKNIVQHCTQCQ 1834 9***********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.0 2.5e-11 6.7e-08 60 141 .. 1714 1794 .. 1707 1796 .. 0.84 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 2.5e-11 SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 60 sdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++++ni++DS Yvv+ +t++++r+ + + + + p+ n l++ + ++ ++++h+++H++ +k Ne+aD l+++a T230564_2 1714 FNQSINIVSDSAYVVQ-ATKDIERALIKYIMDDQLN-PLFN-LLQQNV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 1794 5789************.9999999977777666666.8999.777777..456888***********98888789*******9986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 2.5e-05 0.069 71 98 .. 1322 1349 .. 1317 1350 .. 0.94 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.5e-05 EEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvp 98 l+ +Dlk++F+++pl++++ +++af++p T230564_2 1322 LIIIDLKDCFFTIPLAKQDFEKFAFTTP 1349 678***********************99 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.1e-05 0.057 4 115 .. 1856 1967 .. 1853 1974 .. 0.91 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.1e-05 DDE_Tnp_IS240 4 wrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkyln 96 w++D v Gk +++ vD + + + + t +k+ l ++ + pe++ tD + y +a++++ ++ + ++ + + + T230564_2 1856 WQMDVMHVPSFGKLSFVHVTVDTYSHFIWATCQTGESTSHVKRHLLSCFPVM-GVPEKVKTDNGPGYcSKAVQKFLNQWKITHTIGILYNSQGQ 1948 888888888899****************************************.*********99999457*******99999******99999* PP DDE_Tnp_IS240 97 nriEsdhrtlKkrlrptrg 115 +iE+ +rtlK++l ++++ T230564_2 1949 AIIERTNRTLKAQLVKQKK 1967 ************9977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.63 # Mc/sec: 14930.81 // Query: T230564_3 [L=3287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-37 128.1 0.1 4.8e-37 127.2 0.1 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprote 7.8e-08 31.8 0.4 1.9e-07 30.6 0.4 1.7 1 RVT_thumb Reverse transcriptase thumb domain 8.7e-06 25.6 2.1 0.006 16.3 0.0 2.3 2 GP41 Retroviral envelope protein 2.5e-05 23.8 0.0 3.4e-05 23.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.017 15.1 0.4 0.031 14.2 0.4 1.3 1 Borrelia_orfX Orf-X protein 0.16 12.1 0.1 1.1 9.5 0.1 2.1 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.2 0.1 1.8e-40 4.8e-37 51 138 .. 2082 2166 .. 2075 2166 .. 0.96 Alignments for each domain: == domain 1 score: 127.2 bits; conditional E-value: 1.8e-40 HERV-K_env_2 51 lgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqdfsyqrslkfrpkgkpcpkeipkeskntevlvweecvansav 138 g+apgclmp+ qnwlvevptvs srftyhmvsgms ++n lqd syqrsl+ rpkgk+cpkeipkesk evlv ecva++av T230564_3 2082 PGKAPGCLMPTTQNWLVEVPTVSATSRFTYHMVSGMS---QINNLQDPSYQRSLQCRPKGKACPKEIPKESKSPEVLVCGECVADTAV 2166 59**********************************9...79******************************************9987 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.4 7e-11 1.9e-07 1 27 [. 1451 1477 .. 1451 1480 .. 0.94 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 7e-11 ES-B----SSSEBHHHHHHHHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWi 27 pqk+++r+d+lk LN+fQkLlgd NWi T230564_3 1451 PQKIEIRKDTLKALNEFQKLLGDTNWI 1477 6*************************9 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 2.2e-06 0.006 2 53 .. 2403 2454 .. 2402 2477 .. 0.94 2 ! 8.3 0.6 0.00065 1.8 111 201 .] 2611 2699 .. 2608 2699 .. 0.70 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2.2e-06 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH...... CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGq 53 a ++l +vq+a+ vn+ +kn k + Q +id+kl +++n l + v+ +G+ T230564_3 2403 AGIALHSSVQTAEYVNDWQKNSSKLWNSQIQIDQKLANQINDLRQTVIWMGE 2454 5689********************************************9998 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00065 HHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX.........XXX.......XXXXXX CS GP41 111 neiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslaksl.qqvraevqllllkkkkg 201 ++i ++++++ + ++ +++ k a sl n ++ Wv+ i+ ++ i++ + ++v l +lll+ ++ l ++ qq a v + +l k+kg T230564_3 2611 EKIFEASKAHLNLVPGTETIVKAADSLTNLKPV-TWVKSIRSFT-IVNFIL-ILVCLFCLLLVYRCIQQLQRDSnQQEWAIVTMVVLSKRKG 2699 578899999999999999999999999876655.8***877665.555544.5566666666654577776655055556667777877776 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 0.0 1.3e-08 3.4e-05 143 222 .] 1372 1444 .. 1372 1444 .. 0.95 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 1.3e-08 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 fn + ++l+++r +++++++++Y+D il++++++++l ++ +++ ++++gl+i +K++ ++++yLG+++ T230564_3 1372 FNYLSAQALQPVRDKFSDCYIVHYVD-ILCAAETRDKLIDRYTFLQTEVANAGLTITSDKIQTS------TPFRYLGMQV 1444 677778999****************5.*************************************......8******985 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.4 1.1e-05 0.031 52 127 .. 1848 1923 .. 1842 1928 .. 0.84 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.1e-05 Borrelia_orfX 52 evyalitsgkqmlltflnldvlnmfm.flltlfpifswplftlenqhvtvfniycfvfllqeslkplkqimdlvila 127 evy+l+ gk m t+l l+ + m l+ + + + e+ + +iy++vfl e++k lkq m +v + T230564_3 1848 EVYVLMCYGKWMSCTYLHLENCHLSM*QLILIHISYG-QPARQEKVLPMLKDIYYLVFLSWEFQKKLKQTMGQVTVV 1923 9******************988888887765554454.5567788888999********************988665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.1 0.0004 1.1 41 81 .. 1125 1165 .. 1113 1175 .. 0.82 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0004 .EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEEST CS RVP 41 kkaesllqGiggatetkqskaievllieekfrgevsplilp 81 +a++++ Gig+a+e++qs +i+++ + ++++++v+p+i++ T230564_3 1125 TQADVSVIGIGTASEVYQSAMILHCPGSDNQESTVQPVITS 1165 46788889999999999999999999999999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 15167.01 // Query: T032043_1 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 2965.36 // Query: T032043_2 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3083.97 // Query: T032043_3 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 3017.90 // Query: T253256_1 [L=1193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6563.40 // Query: T253256_2 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6686.49 // Query: T253256_3 [L=1192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 6959.41 // Query: T337123_1 [L=2468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 12837.32 // Query: T337123_2 [L=2468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 13075.05 // Query: T337123_3 [L=2468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 11207.19 // Query: T333018_1 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3496.03 // Query: T333018_2 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3381.41 // Query: T333018_3 [L=720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3269.52 // Query: T268204_1 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1424.58 // Query: T268204_2 [L=243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 479 (0.0293757); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 1336.89 // Query: T268204_3 [L=243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1363.10 // Query: T277788_1 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3576.04 // Query: T277788_2 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.63 # Mc/sec: 3178.70 // Query: T277788_3 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.66 # Mc/sec: 3034.21 // Query: T210535_1 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 9994.15 // Query: T210535_2 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.70 # Mc/sec: 8709.18 // Query: T210535_3 [L=2130] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2130 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 8124.76 // Query: T357969_1 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1065 (0.0653134); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 4219.72 // Query: T357969_2 [L=884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1312 (0.0804612); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 4014.24 // Query: T357969_3 [L=884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1135 (0.0696063); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.68 # Mc/sec: 3719.08 // Query: T089823_1 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1376 (0.0843861); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 160 (0.00981234); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.06u 0.57s 00:00:05.63 Elapsed: 00:00:01.39 # Mc/sec: 3575.01 // Query: T089823_2 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1400 (0.085858); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.74u 0.57s 00:00:05.31 Elapsed: 00:00:01.23 # Mc/sec: 4037.72 // Query: T089823_3 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1261 (0.0773335); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.86u 0.50s 00:00:03.36 Elapsed: 00:00:01.02 # Mc/sec: 4869.02 // Query: T124777_1 [L=3276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.30s 00:00:01.62 Elapsed: 00:00:00.79 # Mc/sec: 11863.39 // Query: T124777_2 [L=3275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 12834.55 // Query: T124777_3 [L=3275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 13578.58 // Query: T138217_1 [L=7681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.33s 00:00:02.54 Elapsed: 00:00:00.71 # Mc/sec: 30949.35 // Query: T138217_2 [L=7681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.34u 0.43s 00:00:02.77 Elapsed: 00:00:00.94 # Mc/sec: 23376.63 // Query: T138217_3 [L=7680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.57u 0.38s 00:00:02.95 Elapsed: 00:00:00.77 # Mc/sec: 28533.99 // Query: T353004_1 [L=864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 4753.38 // Query: T353004_2 [L=864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 4261.65 // Query: T353004_3 [L=864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 4052.06 // Query: T184389_1 [L=7095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 746 (0.04575); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.52u 0.50s 00:00:04.01 Elapsed: 00:00:01.08 # Mc/sec: 18794.06 // Query: T184389_2 [L=7094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.86 8.8 12.3 1.4 8.1 12.3 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 12.3 8.8e-05 1.4 181 207 .. 2968 2994 .. 2938 3017 .. 0.60 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 8.8e-05 SelP_N 181 ktehehahshkqghkhhekhghhHkek 207 + +++h+h++ h+hh +h+hhH+++ T184389_2 2968 PPPSPSPHHHTHHHQHHPHHHHHHHHH 2994 333444555555555555555555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1038 (0.0636575); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 87 (0.00533546); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.31u 0.44s 00:00:03.75 Elapsed: 00:00:00.95 # Mc/sec: 21362.87 // Query: T184389_3 [L=7094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.42s 00:00:02.68 Elapsed: 00:00:00.79 # Mc/sec: 25689.53 // Query: T094022_1 [L=1271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.095 13.0 8.7 0.21 11.9 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 8.7 1.3e-05 0.21 8 50 .. 737 779 .. 736 786 .. 0.88 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 1.3e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094022_1 737 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 779 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 777 (0.0476512); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 6992.53 // Query: T094022_2 [L=1271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 6992.53 // Query: T094022_3 [L=1270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 6374.13 // Query: T365640_1 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.62 # Mc/sec: 1711.88 // Query: T365640_2 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 1798.93 // Query: T365640_3 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 1798.93 // Query: T227484_1 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1479 (0.0907028); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 1565.28 // Query: T227484_2 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1134 (0.069545); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 1951.49 // Query: T227484_3 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1502 (0.0921133); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 1561.20 // Query: T216713_1 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 4365.23 // Query: T216713_2 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 4018.78 // Query: T216713_3 [L=885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.64 # Mc/sec: 3955.99 // Query: T368545_1 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.64 # Mc/sec: 3370.42 // Query: T368545_2 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 3268.28 // Query: T368545_3 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 3479.14 // Query: T052923_1 [L=1459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.69 # Mc/sec: 6049.20 // Query: T052923_2 [L=1459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.61 # Mc/sec: 6842.54 // Query: T052923_3 [L=1459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 6324.17 // Query: T316341_1 [L=2347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.61 # Mc/sec: 11007.16 // Query: T316341_2 [L=2347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.62 # Mc/sec: 10829.63 // Query: T316341_3 [L=2346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 10653.19 // Query: T044658_1 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 7876.51 // Query: T044658_2 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 7288.71 // Query: T044658_3 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 8005.63 // Query: T307682_1 [L=796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 4379.27 // Query: T307682_2 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 3790.60 // Query: T307682_3 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3499.02 // Query: T165557_1 [L=662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 2826.67 // Query: T165557_2 [L=662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 3006.14 // Query: T165557_3 [L=661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 3100.01 // Query: T001126_1 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 4493.70 // Query: T001126_2 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5617.13 // Query: T001126_3 [L=1021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.6 10.3 2.8 1.2 9.4 2.8 1.5 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 2.8 7.3e-05 1.2 16 52 .. 824 860 .. 824 867 .. 0.71 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 7.3e-05 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkask 52 +Y+++Y++I++++ + f + +r Lk s T001126_3 824 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCSG 860 79*********99888887776666555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46 # Mc/sec: 6349.80 // Query: T277944_1 [L=1519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.44 # Mc/sec: 9876.37 // Query: T277944_2 [L=1519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45 # Mc/sec: 9656.89 // Query: T277944_3 [L=1519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8868.57 // Query: T048336_1 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 5082.54 // Query: T048336_2 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4869.25 // Query: T048336_3 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 5186.81 // Query: T211563_1 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.55 # Mc/sec: 15651.34 // Query: T211563_2 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 27.3 0.3 4e-06 26.2 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 1.6 8.4 52.4 0.055 13.1 17.4 4.2 3 Collagen Collagen triple helix repeat (20 copies) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.3 4.9e-10 4e-06 1 19 [] 816 834 .. 816 834 .. 0.98 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 4.9e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fa++WM+L +I+LSEisQ T211563_2 816 PFATTWMKLKDIMLSEISQ 834 8*****************9 PP >> Collagen Collagen triple helix repeat (20 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 17.4 6.7e-06 0.055 6 55 .. 1623 1672 .. 1622 1674 .. 0.72 2 ? 11.8 21.2 1.7e-05 0.14 2 54 .. 1664 1716 .. 1663 1723 .. 0.87 3 ? -3.4 3.9 0.95 7.8e+03 14 22 .. 1985 1993 .. 1983 2007 .. 0.41 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 6.7e-06 XXXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXXXXXXXXXX CS Collagen 6 pGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGeaG 55 pG+pG+ ppG++G pG+ ++G++G+ ++G+pG +G+ +pG +G++G T211563_2 1623 PGDPGDLPPPGNPGDPGDLPPPGDPGDLQPPGDPGDPGDLPPPGDPGDPG 1672 67777777888888888888888888777777777777777777777766 PP == domain 2 score: 11.8 bits; conditional E-value: 1.7e-05 XXXXXXXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXXXXXXXXX CS Collagen 2 ppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGea 54 ppG pG+pG+ ppG++GepG+ ++G++G+ ++G+pG +G+ +pG++G + T211563_2 1664 PPGDPGDPGDLPPPGDPGEPGDLPPPGDPGDLPPPGDPGDPGDLPPPGREGGQ 1716 68999999999999999999999999999999999999999999999998865 PP == domain 3 score: -3.4 bits; conditional E-value: 0.95 XXXXXXXXX CS Collagen 14 ppGkrGepG 22 + G+ GepG T211563_2 1985 QGGPGGEPG 1993 111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.50 # Mc/sec: 17216.47 // Query: T211563_3 [L=3008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 803 (0.0492457); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.56 # Mc/sec: 15097.15 // Query: T202688_1 [L=1972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-37 127.7 0.2 5.3e-37 127.0 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.0 0.2 3.3e-41 5.3e-37 1 168 [. 1103 1267 .. 1103 1268 .. 0.87 Alignments for each domain: == domain 1 score: 127.0 bits; conditional E-value: 3.3e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202688_1 1103 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1196 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202688_1 1197 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1267 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1972 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 11061.88 // Query: T202688_2 [L=1971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.53 # Mc/sec: 10639.05 // Query: T202688_3 [L=1971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-10 40.0 0.3 6.3e-10 39.1 0.3 1.4 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.1 0.3 3.9e-14 6.3e-10 33 96 .. 1501 1565 .. 1496 1571 .. 0.95 Alignments for each domain: == domain 1 score: 39.1 bits; conditional E-value: 3.9e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202688_3 1501 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1565 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 11277.39 // Query: T296168_1 [L=2967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 15432.88 // Query: T296168_2 [L=2967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 16643.30 // Query: T296168_3 [L=2967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.53 # Mc/sec: 16015.25 // Query: T099962_1 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 8689.77 // Query: T099962_2 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47 # Mc/sec: 8874.66 // Query: T099962_3 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8506.59 // Query: T346972_1 [L=2514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 13831.01 // Query: T346972_2 [L=2514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 13318.75 // Query: T346972_3 [L=2514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 14102.21 // Query: T383386_1 [L=2412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-10 38.8 0.1 1e-09 38.1 0.1 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.099 12.7 1.2 0.32 11.1 0.0 2.0 2 RNase_H RNase H Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.1 1.2e-13 1e-09 95 208 .. 845 956 .. 839 959 .. 0.90 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 1.2e-13 Gag_p30 95 dyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleg.lqea 193 d + a+ +e+++ ++l++ g++ + r nl+++ ++ q k+e p +l+rlk+ r+y+ edp + + + f+++s +di+kklq +e+ ++ T383386_1 845 DNNNAAHQENVQDIKELIIKGIKRSVPRTQNLTQIFDIQQDKDERPIELLDRLKKQLRKYAGL--EDPPGQGMLKFHFVTNSWPDINKKLQNIEN*K-DK 941 567778889999999*********************************************987..67888899******************998444.57 PP Gag_p30 194 tlkdlvkeaekvynk 208 +++l++ea++vy + T383386_1 942 PIEELLREAQNVYVR 956 899*********976 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.5 0.15 1.3e+03 85 116 .. 996 1027 .. 985 1033 .. 0.72 2 ? 11.1 0.0 3.9e-05 0.32 36 76 .. 1483 1522 .. 1474 1533 .. 0.80 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.15 HHTTSSSETTSSBHTTHHHHHHHHHCHCSSEE CS RNase_H 85 kknawkttseqkpvknkelaellkelakkkkv 116 +++++k+t++ ++kn++l+++++++ k+ kv T383386_1 996 RQRERKRTKQMLQIKNRSLQKRMSQMGKRTKV 1027 4444444555556**********999998877 PP == domain 2 score: 11.1 bits; conditional E-value: 3.9e-05 EECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHH CS RNase_H 36 pleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkg 76 +l++ + ++ EL A+ ++Lk ++++ +iyt SkYv++ T383386_1 1483 KLPNNWSGQTCELFALSQVLKyI--QNQEGTIYTYSKYVLQW 1522 566677889************54..78899*********993 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1279 (0.0784374); expected 326.1 (0.02) Passed bias filter: 471 (0.0288851); expected 326.1 (0.02) Passed Vit filter: 101 (0.00619404); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.35u 0.33s 00:00:01.68 Elapsed: 00:00:00.56 # Mc/sec: 12322.00 // Query: T383386_2 [L=2411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.52 # Mc/sec: 13264.35 // Query: T383386_3 [L=2411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.54 # Mc/sec: 12773.08 // Query: T323224_1 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.8 6.8 49.1 0.056 13.5 17.0 7.0 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 3.8 6.5e-05 1.1 25 50 .] 326 351 .. 323 351 .. 0.87 2 ? 13.5 17.0 3.5e-06 0.056 2 46 .. 377 424 .. 376 437 .. 0.95 3 ? -2.0 0.1 0.24 3.9e+03 11 30 .. 429 448 .. 424 453 .. 0.77 4 ? -0.0 0.2 0.06 9.7e+02 22 48 .. 550 574 .. 546 581 .. 0.56 5 ? 0.7 0.2 0.035 5.7e+02 6 14 .. 692 710 .. 690 739 .. 0.64 6 ? -2.5 0.1 0.35 5.8e+03 37 47 .. 926 936 .. 913 936 .. 0.69 7 ? -3.0 0.2 0.5 8.2e+03 7 25 .. 1010 1027 .. 1003 1028 .. 0.77 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 6.5e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323224_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 2 score: 13.5 bits; conditional E-value: 3.5e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323224_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 3 score: -2.0 bits; conditional E-value: 0.24 DUF4705 11 LqapaslqasglsrpsaqLp 30 L+a+ +l++ gl r ++ L+ T323224_1 429 LRAALLLPHGGLLRQGLTLT 448 66788899999999888876 PP == domain 4 score: -0.0 bits; conditional E-value: 0.06 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323224_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP == domain 5 score: 0.7 bits; conditional E-value: 0.035 DUF4705 6 asrrpLqa..........p 14 a+rr+Lq+ p T323224_1 692 AGRRRLQDdlglqrspggP 710 7899999844443333321 PP == domain 6 score: -2.5 bits; conditional E-value: 0.35 DUF4705 37 klppagLsrPs 47 ++p++gL rP+ T323224_1 926 ERPELGLGRPT 936 56777999985 PP == domain 7 score: -3.0 bits; conditional E-value: 0.5 DUF4705 7 srrpLqapaslqasglsrp 25 +r+ L p++l+ g+ p T323224_1 1010 GRQELG-PQRLPRAGSIAP 1027 677887.999998887655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6980.43 // Query: T323224_2 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.46 # Mc/sec: 7587.42 // Query: T323224_3 [L=1219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-05 24.6 22.5 0.00029 20.9 6.5 7.3 8 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.4 0.82 1.3e+04 35 48 .. 201 214 .. 198 214 .. 0.81 2 ? -2.7 0.2 0.39 6.4e+03 21 47 .. 248 274 .. 247 276 .. 0.81 3 ? 1.2 1.2 0.025 4.1e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 20.9 6.5 1.8e-08 0.00029 26 50 .] 357 381 .. 335 381 .. 0.81 5 ! 19.1 8.0 6.2e-08 0.001 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? 0.0 2.6 0.057 9.2e+02 2 14 .. 431 446 .. 430 464 .. 0.74 7 ? -2.3 0.1 0.3 4.9e+03 24 38 .. 584 598 .. 578 612 .. 0.60 8 ? -2.3 0.0 0.29 4.8e+03 21 47 .. 951 977 .. 949 978 .. 0.77 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.82 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323224_3 201 GPGRPTCSSSRPTS 214 78888888899987 PP == domain 2 score: -2.7 bits; conditional E-value: 0.39 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 + r++a ++ A++ p l ++L + s T323224_3 248 CHRRAGAEPGEATVRPDLGLGSLASGS 274 77799999999**99999888887764 PP == domain 3 score: 1.2 bits; conditional E-value: 0.025 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323224_3 324 PGLCLPHGGLCRPSC 338 345556667777755 PP == domain 4 score: 20.9 bits; conditional E-value: 1.8e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323224_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 58**********************9 PP == domain 5 score: 19.1 bits; conditional E-value: 6.2e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323224_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: 0.0 bits; conditional E-value: 0.057 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323224_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -2.3 bits; conditional E-value: 0.3 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323224_3 584 RGSRRPLSAWQGPVR 598 555566666666655 PP == domain 8 score: -2.3 bits; conditional E-value: 0.29 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 g++++ + A +G ++gL+rP+ T323224_3 951 GPGQADLTTVWACRGRREEELGLERPT 977 566666666678888888999****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 7117.04 // Query: T369298_1 [L=1344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 8010.32 // Query: T369298_2 [L=1344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.46 # Mc/sec: 8358.60 // Query: T369298_3 [L=1344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 6103.10 // Query: T139374_1 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 239 (0.0146572); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 2657.80 // Query: T139374_2 [L=575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 3046.25 // Query: T139374_3 [L=575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 2419.08 // Query: T228197_1 [L=2552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 14315.37 // Query: T228197_2 [L=2552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.66 # Mc/sec: 11061.88 // Query: T228197_3 [L=2551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.30s 00:00:01.49 Elapsed: 00:00:00.74 # Mc/sec: 9862.13 // Query: T316519_1 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.74 # Mc/sec: 6599.24 // Query: T316519_2 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 7073.30 // Query: T316519_3 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.73 # Mc/sec: 6685.72 // Query: T288599_1 [L=4373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-51 174.9 0.4 2e-51 174.9 0.4 2.4 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.4 3.0 0.00079 13 2 39 .. 547 580 .. 545 584 .. 0.84 2 ! 174.9 0.4 1.2e-55 2e-51 260 368 .] 773 883 .. 773 883 .. 0.98 3 ? -4.0 0.2 0.28 4.6e+03 214 269 .. 1873 1929 .. 1864 1930 .. 0.79 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.00079 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldp 39 G+ + rk +n k +++s+P+k+ sssPa e+ + T288599_1 547 GRNQ---SRKVENPKNQSASSPPKDCSSSPAR-EQNRW 580 5555...8***********************9.55555 PP == domain 2 score: 174.9 bits; conditional E-value: 1.2e-55 HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT. CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke. 353 n +kil+a rekG+vt kGk irl dlsaetl+arrew+++++ilkek+ qPr++yPakls+i++Geik f dk++lrd++++rPal++llke T288599_1 773 NEEKILRASREKGQVTHKGKSIRLIVDLSAETLQARREWGPIFNILKEKNSQPRISYPAKLSFISEGEIKPFTDKQMLRDFVTIRPALQELLKEa 867 579******************************************************************************************** PP .T-SSXSSXXXXXXXX CS Transposase_22 354 .knerkdryqaleqar 368 ++er+++yq+l++++ T288599_1 868 lNKERNNQYQPLQKHA 883 *************996 PP == domain 3 score: -4.0 bits; conditional E-value: 0.28 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSH.HHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkv.lnkdkilkavr 269 k +een+ n +++ + + +tP+ ++k + + ++++ k+ i++ r T288599_1 1873 KTLEENLGNTIQDIGMGKDFMTKTPKAMSRKAKIEKWNLIKLNSFyTAKETIIRVNR 1929 467999999999999999999999999999999888888887664256777777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.78 # Mc/sec: 16038.99 // Query: T288599_2 [L=4372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-43 148.3 7.0 4.2e-43 147.5 7.0 1.3 1 Transposase_22 L1 transposable element 9.9e-36 123.2 0.8 6.3e-26 91.1 0.1 2.3 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.5 7.0 5.2e-47 4.2e-43 165 263 .. 678 776 .. 675 777 .. 0.97 Alignments for each domain: == domain 1 score: 147.5 bits; conditional E-value: 5.2e-47 HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 165 evkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 k rekr+ ++eqslq+i+d+vkrP + liGv+es+ e+++klen+l++ii+enfPnl+++an++iqe +rtP+r++s+ra++rhiivr+t+v+ T288599_2 678 RDKIREKRMNRNEQSLQEIWDYVKRPHIHLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQETQRTPHRYSSRRATPRHIIVRFTEVE 772 5699******************************************************************************************* PP HHHH CS Transposase_22 260 nkdk 263 +k+k T288599_2 773 MKKK 776 **98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 0.1 3.2e-11 2.6e-07 6 55 .. 1431 1480 .. 1426 1485 .. 0.89 2 ! 91.1 0.1 7.7e-30 6.3e-26 75 209 .. 1502 1646 .. 1500 1665 .. 0.94 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 3.2e-11 .S-EEE......-THHHHCTB--.........-------HHHH....... CS RVT_1 6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav 55 ++++Rpisl+++d+k+lnk++a++++++++kl +++q+ f pg + + ++ T288599_2 1431 KNNFRPISLMNIDVKILNKILANQIQQHIKKLTHHDQVSFIPGMQGWFNI 1480 479****************************************7777666 PP == domain 2 score: 91.1 bits; conditional E-value: 7.7e-30 EBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TE CS RVT_1 75 DlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtl 163 D + Fd++++++ l++l++++++ + ++++++++ ++++++ +n+++ e ++ k+g++q ++lSPllfn++++ l re+r++ ++v+l T288599_2 1502 DAETVFDKIQHRFMLKTLNKLGIDGMYLKILRAIYDKPTANIILNEQKLEAFPLKTGTRQECPLSPLLFNIVLEVLAREIRQEKeikgiqlgkEEVKL 1599 88999******************************************99*********************************99************** PP EECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE... CS RVT_1 164 lrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfs 209 +++aDD++++ ++ ++q+ll+ + ++ k sg+kin +K++++l++ T288599_2 1600 SLFADDMIVYLENpIVSAQNLLKLIGNFSKVSGYKINVQKSQAFLYT 1646 *************6677***************************863 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 557 (0.0341592); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.48u 0.34s 00:00:01.82 Elapsed: 00:00:00.66 # Mc/sec: 18950.83 // Query: T288599_3 [L=4372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-09 34.8 0.5 1.7e-08 33.7 0.5 1.6 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.14 12.6 3.0 0.29 11.6 3.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 0.5 2.1e-12 1.7e-08 1 19 [] 2139 2157 .. 2139 2157 .. 0.98 Alignments for each domain: == domain 1 score: 33.7 bits; conditional E-value: 2.1e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T288599_3 2139 SFAGTWMKLETIILSNLSQ 2157 7*****************9 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 3.0 3.6e-05 0.29 12 71 .. 611 672 .. 599 685 .. 0.85 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3.6e-05 Syntaxin-6_N 12 kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknp 71 +++++le+ +++w +++ +++++ + e++ t +eLr ++ s + +++ee v+++e + T288599_3 611 EEAKNLEKWLDEWlTRINSVEKTlNDPMEMQTTARELRDECTSFNSRFDQVEERVSVIEDHI 672 5788999999***6699999999989********************************9854 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.76 # Mc/sec: 16457.30 // Query: T289998_1 [L=2446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.60 # Mc/sec: 11662.65 // Query: T289998_2 [L=2445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.27s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 9992.47 // Query: T289998_3 [L=2445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.77 # Mc/sec: 9084.06 // Query: T197486_1 [L=2978] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2978 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1849 (0.113394); expected 326.1 (0.02) Passed bias filter: 504 (0.0309089); expected 326.1 (0.02) Passed Vit filter: 366 (0.0224457); expected 16.3 (0.001) Passed Fwd filter: 72 (0.00441555); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.48u 0.44s 00:00:03.92 Elapsed: 00:00:00.93 # Mc/sec: 9160.81 // Query: T197486_2 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 13.6 70.4 0.028 13.0 70.4 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 70.4 1.7e-06 0.028 105 229 .. 1033 1151 .. 1023 1180 .. 0.66 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.7e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS MIP-T3 105 sgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkek 202 +++++e++ke +k+e+kk+++ke++ ker+++e + ek r++++e +ke++k+ k+r++ekere e+++er +++kkk +k++ +e+e+++++ T197486_2 1033 QKRKKERKKERRKKERKKERKKERR--KERRKEERKREKERERKREGKKEREKERGKERKREKEREGERKRERGEEKKKK----KKERVRERERERKR 1124 5666677777777777777777766..44444555566666666666666666666666666666666666665555543....56666677777777 PP XXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 203 ssksesgkeeerskdeerekeadkgkd 229 ++k+e++ke++r+k++er+ke+++ + T197486_2 1125 ERKREGKKEKKRKKERERKKEKKETIA 1151 777777777777777777777666544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1598 (0.0980007); expected 326.1 (0.02) Passed bias filter: 481 (0.0294983); expected 326.1 (0.02) Passed Vit filter: 318 (0.019502); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.89u 0.47s 00:00:04.36 Elapsed: 00:00:01.01 # Mc/sec: 8432.37 // Query: T197486_3 [L=2977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1468 (0.0900282); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 210 (0.0128787); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.48s 00:00:02.98 Elapsed: 00:00:00.91 # Mc/sec: 9359.00 // Query: T383215_1 [L=5038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.40s 00:00:02.11 Elapsed: 00:00:00.83 # Mc/sec: 17364.89 // Query: T383215_2 [L=5038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-09 38.1 0.0 1.8e-09 37.4 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 3e-05 24.1 0.0 5e-05 23.4 0.0 1.3 1 GATase_6 Glutamine amidotransferase domain Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.4 0.0 2.3e-13 1.8e-09 47 123 .. 202 277 .. 183 278 .. 0.91 Alignments for each domain: == domain 1 score: 37.4 bits; conditional E-value: 2.3e-13 GATase_7 47 hrfrtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkall 123 ++ +tk D e++l+l+++ ++e+++ l+G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se kal+ T383215_2 202 FEYQTKVDGEIILHLYDK-GGIEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVCSEAKALR 277 4669*************9.8******************************.************9779*********96 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 6.2e-09 5e-05 67 129 .. 203 266 .. 184 272 .. 0.82 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 6.2e-09 GATase_6 67 afrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgl 129 + ++++D e++l+l+++ G e+++ l+G+faf++ d++++++ l rd + gv+pl+ av+e+g+ T383215_2 203 EYQTKVDGEIILHLYDKGGiEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGF 266 35789**********9999**************************955.6778888888886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.55u 0.37s 00:00:01.92 Elapsed: 00:00:00.73 # Mc/sec: 19743.65 // Query: T383215_3 [L=5038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.31s 00:00:02.02 Elapsed: 00:00:00.69 # Mc/sec: 20888.21 // Query: T300733_1 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.4 5.1 0.028 14.4 5.1 1.5 1 Mucin-like Mucin-like 6.8 5.6 8.3 11 5.0 8.3 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 5.1 3.4e-06 0.028 7 87 .. 372 452 .. 363 456 .. 0.85 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.4e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300733_1 372 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 452 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 8.3 0.0013 11 242 305 .. 394 452 .. 367 467 .. 0.62 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0013 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300733_1 394 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 452 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 4374.17 // Query: T300733_2 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-09 35.4 0.7 7.6e-09 35.4 0.7 1.8 2 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.3e-06 27.5 4.4 5.2e-06 26.3 4.4 1.5 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 1.0 2 1.6e+04 31 53 .. 149 171 .. 143 175 .. 0.73 2 ! 35.4 0.7 9.3e-13 7.6e-09 2 62 .. 549 610 .. 548 613 .. 0.86 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 2 Epiglycanin_C 31 GllvgLsfCvrnllslrnladta 53 G++ g+ fC ++s r + +a T300733_2 149 GFIRGFRFCFFLIFSCRHCVRSA 171 78888899988888877766665 PP == domain 2 score: 35.4 bits; conditional E-value: 9.3e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300733_2 549 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 610 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.3 4.4 6.3e-10 5.2e-06 10 82 .. 464 536 .. 451 543 .. 0.54 Alignments for each domain: == domain 1 score: 26.3 bits; conditional E-value: 6.3e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300733_2 464 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 536 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 4947.83 // Query: T300733_3 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 5482.39 // Query: T323204_1 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-69 229.3 521.4 3.7e-08 33.3 4.4 49.1 43 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 2.9 2.1e-07 0.0034 29 48 .. 56 75 .. 47 75 .. 0.95 2 ! 11.6 3.8 1.4e-05 0.23 2 43 .. 83 124 .. 83 129 .. 0.90 3 ! 25.3 6.7 7.5e-10 1.2e-05 1 36 [. 135 169 .. 135 172 .. 0.94 4 ! 12.8 9.6 5.9e-06 0.095 3 50 .] 169 237 .. 167 237 .. 0.91 5 ! 4.3 7.1 0.0027 44 2 47 .. 211 246 .. 211 253 .. 0.68 6 ! 12.0 2.7 1e-05 0.16 3 26 .. 256 278 .. 255 285 .. 0.91 7 ! 14.7 4.9 1.4e-06 0.024 10 39 .. 305 333 .. 305 335 .. 0.96 8 ! 19.9 0.2 3.6e-08 0.00059 22 47 .. 349 374 .. 341 376 .. 0.91 9 ! 20.9 5.7 1.7e-08 0.00027 8 37 .. 388 416 .. 381 417 .. 0.90 10 ! 3.6 1.8 0.0043 70 22 39 .. 413 430 .. 412 433 .. 0.87 11 ! 8.9 5.8 9.3e-05 1.5 2 45 .. 488 530 .. 446 532 .. 0.90 12 ? 0.9 1.6 0.03 5e+02 19 39 .. 525 545 .. 522 555 .. 0.89 13 ! 6.3 4.0 0.00062 10 19 49 .. 556 588 .. 550 588 .. 0.87 14 ! 5.8 10.2 0.00088 14 5 49 .. 620 660 .. 592 660 .. 0.94 15 ! 4.4 0.9 0.0024 39 1 19 [. 666 683 .. 666 686 .. 0.91 16 ! 17.2 9.3 2.4e-07 0.0039 1 40 [. 687 737 .. 687 740 .. 0.94 17 ! 3.4 2.6 0.005 81 30 49 .. 758 777 .. 753 778 .. 0.79 18 ? -1.9 0.1 0.23 3.8e+03 23 33 .. 789 799 .. 779 801 .. 0.65 19 ! 18.3 0.3 1.1e-07 0.0018 23 48 .. 834 859 .. 828 859 .. 0.89 20 ! 24.0 0.9 1.8e-09 3e-05 29 50 .] 861 882 .. 861 882 .. 0.99 21 ! 12.2 0.4 9.1e-06 0.15 31 47 .. 884 900 .. 884 903 .. 0.94 22 ! 4.6 1.4 0.0021 35 14 39 .. 899 924 .. 899 928 .. 0.89 23 ! 8.5 2.1 0.00013 2 4 30 .. 934 959 .. 932 962 .. 0.89 24 ! 6.6 0.5 0.00051 8.3 3 18 .. 965 979 .. 964 983 .. 0.87 25 ! 22.7 14.2 4.6e-09 7.6e-05 1 50 [] 984 1032 .. 984 1032 .. 0.91 26 ! 6.5 4.3 0.00054 8.8 21 38 .. 1024 1041 .. 1011 1049 .. 0.83 27 ! 25.4 7.4 6.6e-10 1.1e-05 2 50 .] 1038 1095 .. 1037 1095 .. 0.82 28 ! 27.4 7.1 1.6e-10 2.6e-06 20 50 .] 1086 1116 .. 1085 1116 .. 0.96 29 ! 15.9 9.3 6.4e-07 0.01 16 49 .. 1103 1136 .. 1102 1138 .. 0.91 30 ! 3.0 11.9 0.0069 1.1e+02 17 50 .] 1125 1170 .. 1123 1170 .. 0.81 31 ? 1.6 5.4 0.019 3.1e+02 14 38 .. 1155 1179 .. 1154 1197 .. 0.80 32 ? 0.5 33.3 0.039 6.4e+02 2 42 .. 1199 1325 .. 1198 1344 .. 0.91 33 ! 33.3 4.4 2.3e-12 3.7e-08 19 50 .] 1358 1389 .. 1347 1389 .. 0.95 34 ! 18.0 17.1 1.4e-07 0.0023 1 50 [] 1394 1455 .. 1394 1455 .. 0.96 35 ? -7.0 17.0 1 1.6e+04 14 50 .] 1563 1604 .. 1519 1604 .. 0.64 36 ? -1.8 0.1 0.22 3.5e+03 31 46 .. 1697 1716 .. 1681 1717 .. 0.78 37 ? -0.5 10.0 0.085 1.4e+03 19 39 .. 1784 1805 .. 1771 1817 .. 0.69 38 ! 7.6 3.9 0.00024 3.9 1 25 [. 1832 1855 .. 1832 1858 .. 0.94 39 ! 12.6 0.4 6.5e-06 0.11 2 15 .. 1866 1878 .. 1866 1885 .. 0.82 40 ! 12.7 19.2 6e-06 0.098 1 37 [. 1886 1965 .. 1886 1967 .. 0.99 41 ! 2.6 14.4 0.0087 1.4e+02 1 46 [. 1962 2007 .. 1962 2008 .. 0.57 42 ! 14.2 4.0 2.2e-06 0.036 16 38 .. 2021 2043 .. 2019 2052 .. 0.86 43 ? 2.3 0.3 0.011 1.8e+02 2 22 .. 2040 2059 .. 2039 2062 .. 0.86 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323204_1 56 LPAASPGPELSPVSLHRPSS 75 9*****************98 PP == domain 2 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323204_1 83 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 124 788********.***********************99765555 PP == domain 3 score: 25.3 bits; conditional E-value: 7.5e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323204_1 135 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 169 9***********.*******************9755 PP == domain 4 score: 12.8 bits; conditional E-value: 5.9e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323204_1 169 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 237 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323204_1 211 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 246 899********.7777777777777777555433.........333 PP == domain 6 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323204_1 256 PALASRWPLQ-AQLLSQDVISRPK 278 9*********.******9999995 PP == domain 7 score: 14.7 bits; conditional E-value: 1.4e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323204_1 305 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 333 9**.************************98 PP == domain 8 score: 19.9 bits; conditional E-value: 3.6e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323204_1 349 FGPVPVQLTATNVGPKLPQVKLSRPA 374 78889********************5 PP == domain 9 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323204_1 388 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 416 69***.**********************96 PP == domain 10 score: 3.6 bits; conditional E-value: 0.0043 DUF4705 22 lsrpsaqLpvAsaGpklp 39 +++ sa+Lp+As G lp T323204_1 413 PGQVSACLPAASTGTALP 430 57889*********9987 PP == domain 11 score: 8.9 bits; conditional E-value: 9.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323204_1 488 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 530 55557888999.***********************998887776 PP == domain 12 score: 0.9 bits; conditional E-value: 0.03 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323204_1 525 PRRLFQAQLLPFAACPGPECP 545 789999**************7 PP == domain 13 score: 6.3 bits; conditional E-value: 0.00062 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323204_1 556 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 588 78999***************65557999*9997 PP == domain 14 score: 5.8 bits; conditional E-value: 0.00088 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323204_1 620 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 660 89999999.9***************97...5778999******** PP == domain 15 score: 4.4 bits; conditional E-value: 0.0024 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323204_1 666 PGTALASWQALQ-AQILQK 683 9***********.999885 PP == domain 16 score: 17.2 bits; conditional E-value: 2.4e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323204_1 687 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 737 889*******************************************98555 PP == domain 17 score: 3.4 bits; conditional E-value: 0.005 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323204_1 758 LTHTPVPKLPPVSQSRPSSS 777 5556779***********97 PP == domain 18 score: -1.9 bits; conditional E-value: 0.23 DUF4705 23 srpsaqLpvAs 33 +psa++ +As T323204_1 789 KSPSAGPAPAS 799 55666666665 PP == domain 19 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323204_1 834 LQTKLSLPVASTGQNCPQVSLSRANS 859 678899*****************976 PP == domain 20 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323204_1 861 LPVASAGQNRPQVSLFTPSSCL 882 8********************9 PP == domain 21 score: 12.2 bits; conditional E-value: 9.1e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323204_1 884 VASAGAKLPQVGLSRPS 900 8***************7 PP == domain 22 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323204_1 899 PSLLLPEGMYRPSLCLTADSPCPALP 924 678999************99999987 PP == domain 23 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323204_1 934 APAFRQLVR-AQLLPHGGLFSPNSCLL 959 9*****555.***************95 PP == domain 24 score: 6.6 bits; conditional E-value: 0.00051 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323204_1 965 SAPASHWPLE-AQLMP 979 6********9.99887 PP == domain 25 score: 22.7 bits; conditional E-value: 4.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323204_1 984 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1032 8***********.***************99876666667899*******9 PP == domain 26 score: 6.5 bits; conditional E-value: 0.00054 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323204_1 1024 SLCGPSSCLPVASVGQAR 1041 5667***********986 PP == domain 27 score: 25.4 bits; conditional E-value: 6.6e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323204_1 1038 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 1095 778888888888888888852.44311566899*************************9 PP == domain 28 score: 27.4 bits; conditional E-value: 1.6e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323204_1 1086 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1116 79***************************87 PP == domain 29 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323204_1 1103 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1136 56899**************************975 PP == domain 30 score: 3.0 bits; conditional E-value: 0.0069 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323204_1 1125 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1170 57899***9637*********9989888888888888888888765 PP == domain 31 score: 1.6 bits; conditional E-value: 0.019 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323204_1 1155 PGLLPPEGLHRPSLSLTADSPRPAS 1179 6689999999999999998877655 PP == domain 32 score: 0.5 bits; conditional E-value: 0.039 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323204_1 1199 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1296 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323204_1 1297 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1325 7888*********************5543 PP == domain 33 score: 33.3 bits; conditional E-value: 2.3e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323204_1 1358 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1389 589****************************9 PP == domain 34 score: 18.0 bits; conditional E-value: 1.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323204_1 1394 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1455 8***********.************************99*99999999999***********8 PP == domain 35 score: -7.0 bits; conditional E-value: 1 DUF4705 14 paslqas...glsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 p++l++ + p + +++As+G+++ pa++ +Pss+L T323204_1 1563 PPTLRSA*apASTGPALAPTAASRGQVPacLPAARVQPSSSL 1604 666664333245568899*******9998877********98 PP == domain 36 score: -1.8 bits; conditional E-value: 0.22 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323204_1 1697 EATVGPADalllPELGLYRP 1716 58888876667799999999 PP == domain 37 score: -0.5 bits; conditional E-value: 0.085 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323204_1 1784 SRRPLRAQLFLPAASLGPTPaS 1805 6777788888888888887752 PP == domain 38 score: 7.6 bits; conditional E-value: 0.00024 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323204_1 1832 PGPGQASRWPRQ-AQLLPSDGISRS 1855 9***********.********9985 PP == domain 39 score: 12.6 bits; conditional E-value: 6.5e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323204_1 1866 GPAWASRRPLQA-Q 1878 9**********4.4 PP == domain 40 score: 12.7 bits; conditional E-value: 6e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323204_1 1886 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1965 9***************************************************************.***************7 PP == domain 41 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323204_1 1962 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 2007 9***********44444444444444444444444444444.....................44444 PP == domain 42 score: 14.2 bits; conditional E-value: 2.2e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323204_1 2021 LLPFGRFGRPSSCLPVASLGPAH 2043 578889***************87 PP == domain 43 score: 2.3 bits; conditional E-value: 0.011 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323204_1 2040 GPAHSSQRPFQ-APFFPSGSL 2059 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 9832.95 // Query: T323204_2 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-57 190.7 522.6 1.3e-15 57.2 9.2 46.0 38 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.0 0.00023 3.8 4 24 .. 53 73 .. 52 90 .. 0.89 2 ? -0.6 15.4 0.088 1.4e+03 7 36 .. 130 158 .. 103 159 .. 0.73 3 ! 23.0 3.9 3.8e-09 6.2e-05 1 31 [. 156 185 .. 156 198 .. 0.88 4 ! 16.1 2.8 5.2e-07 0.0085 1 35 [. 199 232 .. 199 241 .. 0.90 5 ! 44.0 11.0 1.1e-15 1.7e-11 1 50 [] 243 291 .. 243 291 .. 0.99 6 ! 23.1 0.8 3.6e-09 5.9e-05 28 50 .] 290 312 .. 289 312 .. 0.97 7 ? -1.2 0.7 0.14 2.2e+03 1 13 [. 317 329 .. 313 360 .. 0.60 8 ! 9.0 1.8 8.8e-05 1.4 20 41 .. 388 414 .. 362 417 .. 0.80 9 ? 0.7 3.4 0.035 5.8e+02 5 26 .. 418 438 .. 418 439 .. 0.94 10 ! 16.9 1.7 3.1e-07 0.0051 2 36 .. 477 510 .. 477 510 .. 0.98 11 ? -4.4 18.4 1 1.6e+04 1 39 [. 508 570 .. 508 599 .. 0.61 12 ? 2.2 7.5 0.012 1.9e+02 1 50 [] 560 620 .. 560 620 .. 0.78 13 ! 3.7 0.2 0.004 65 16 37 .. 619 640 .. 618 650 .. 0.82 14 ! 2.7 14.0 0.0084 1.4e+02 2 33 .. 656 718 .. 656 718 .. 0.85 15 ! 24.5 3.3 1.3e-09 2.1e-05 2 35 .. 720 752 .. 720 756 .. 0.93 16 ! 4.7 0.8 0.002 32 28 49 .. 766 787 .. 759 787 .. 0.88 17 ! 13.0 6.3 5.1e-06 0.083 10 48 .. 791 838 .. 789 839 .. 0.97 18 ! 3.0 7.5 0.0066 1.1e+02 3 29 .. 878 904 .. 839 907 .. 0.92 19 ! 14.5 1.4 1.7e-06 0.027 1 30 [. 908 936 .. 908 939 .. 0.96 20 ? 0.6 4.7 0.037 6.1e+02 18 50 .] 943 979 .. 940 979 .. 0.80 21 ! 9.7 3.2 5.4e-05 0.88 8 43 .. 980 1014 .. 979 1019 .. 0.89 22 ! 20.3 15.6 2.6e-08 0.00042 2 49 .. 1027 1073 .. 1026 1073 .. 0.94 23 ? -2.0 0.0 0.25 4.1e+03 7 15 .. 1074 1081 .. 1074 1086 .. 0.81 24 ! 10.1 0.6 4.2e-05 0.68 1 15 [. 1089 1102 .. 1089 1109 .. 0.82 25 ! 20.9 14.2 1.7e-08 0.00028 1 39 [. 1110 1160 .. 1110 1163 .. 0.93 26 ! 24.2 25.1 1.6e-09 2.7e-05 1 50 [] 1164 1247 .. 1164 1247 .. 0.95 27 ! 8.5 7.6 0.00012 2 29 50 .] 1247 1268 .. 1245 1268 .. 0.96 28 ! 21.1 2.9 1.5e-08 0.00024 17 50 .] 1268 1301 .. 1268 1301 .. 0.96 29 ! 57.2 9.2 8.2e-20 1.3e-15 1 50 [] 1306 1353 .. 1306 1353 .. 0.99 30 ? -3.2 8.5 0.59 9.7e+03 5 50 .] 1354 1410 .. 1354 1410 .. 0.71 31 ? 0.0 15.5 0.057 9.3e+02 5 50 .] 1387 1444 .. 1383 1444 .. 0.78 32 ? -3.9 2.0 0.99 1.6e+04 7 24 .. 1482 1518 .. 1480 1547 .. 0.54 33 ? -6.9 12.4 1 1.6e+04 4 41 .. 1556 1601 .. 1556 1609 .. 0.67 34 ! 2.8 0.9 0.0079 1.3e+02 8 27 .. 1774 1792 .. 1771 1794 .. 0.87 35 ! 11.4 10.5 1.6e-05 0.26 14 48 .. 1833 1879 .. 1828 1880 .. 0.74 36 ? -6.0 12.4 1 1.6e+04 9 45 .. 1883 1928 .. 1882 1933 .. 0.62 37 ? -13.8 23.1 1 1.6e+04 7 46 .. 1933 1985 .. 1931 2021 .. 0.83 38 ! 22.6 3.2 4.9e-09 8e-05 2 36 .. 2029 2062 .. 2028 2069 .. 0.91 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323204_2 53 APTSRQPLQAQNFLQSASTDQ 73 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.088 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323204_2 130 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 158 345555.**********************9 PP == domain 3 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323204_2 156 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 185 9***********.*****************9 PP == domain 4 score: 16.1 bits; conditional E-value: 5.2e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323204_2 199 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 232 57*******9996..7*******************9 PP == domain 5 score: 44.0 bits; conditional E-value: 1.1e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323204_2 243 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 291 8***********.************************************9 PP == domain 6 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323204_2 290 CLLVAYEGPKSPQVDLSRPSSCL 312 9*********************9 PP == domain 7 score: -1.2 bits; conditional E-value: 0.14 DUF4705 1 PgpAPasrrpLqa 13 +gp as+ Lqa T323204_2 317 TGPTSASWGLLQA 329 4555555555665 PP == domain 8 score: 9.0 bits; conditional E-value: 8.8e-05 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323204_2 388 NSLCRPCSCLPGASPGPALaswrlPQA 414 5799*************9965555555 PP == domain 9 score: 0.7 bits; conditional E-value: 0.035 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323204_2 418 PACQQPQQ-AQLFPHSGPFRPN 438 9*******.*********9996 PP == domain 10 score: 16.9 bits; conditional E-value: 3.1e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323204_2 477 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 510 59*********.**********************9 PP == domain 11 score: -4.4 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323204_2 508 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 570 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 12 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323204_2 560 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 620 789999999646557888895555444455679***********99999999999999887 PP == domain 13 score: 3.7 bits; conditional E-value: 0.004 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323204_2 619 SLPHSILRKLSICLTVASPGHE 640 67888888889*********87 PP == domain 14 score: 2.7 bits; conditional E-value: 0.0084 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323204_2 656 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 718 9**********9999999999999999999998888888888888888888888888888776 PP == domain 15 score: 24.5 bits; conditional E-value: 1.3e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323204_2 720 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 752 89*********.*******************985 PP == domain 16 score: 4.7 bits; conditional E-value: 0.002 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323204_2 766 FLQSASPGQALPPKGFCRPKSS 787 6888***************997 PP == domain 17 score: 13.0 bits; conditional E-value: 5.1e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323204_2 791 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 838 9*********************************************98 PP == domain 18 score: 3.0 bits; conditional E-value: 0.0066 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323204_2 878 PALVCKWPLQEQNCLKSASPGPASCFP 904 999999***999999999999988776 PP == domain 19 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323204_2 908 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 936 8***********.****************9 PP == domain 20 score: 0.6 bits; conditional E-value: 0.037 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323204_2 943 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 979 56777788888888886656779999**********8 PP == domain 21 score: 9.7 bits; conditional E-value: 5.4e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323204_2 980 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1014 57777.999**********************98877 PP == domain 22 score: 20.3 bits; conditional E-value: 2.6e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323204_2 1027 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1073 9********995..4689999**************************97 PP == domain 23 score: -2.0 bits; conditional E-value: 0.25 DUF4705 7 srrpLqapa 15 srrpLq ++ T323204_2 1074 SRRPLQ-AQ 1081 79****.66 PP == domain 24 score: 10.1 bits; conditional E-value: 4.2e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323204_2 1089 PGPAPASRCPLQA-Q 1102 9***********4.4 PP == domain 25 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323204_2 1110 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1160 9*******************************9.89**********876666 PP == domain 26 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323204_2 1164 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1247 8*********************************************6515699*****************************98 PP == domain 27 score: 8.5 bits; conditional E-value: 0.00012 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323204_2 1247 LPASSPGPALPPGCVSRPDCCL 1268 9********************9 PP == domain 28 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323204_2 1268 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1301 6889****************************87 PP == domain 29 score: 57.2 bits; conditional E-value: 8.2e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323204_2 1306 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1353 9*********************************************..97 PP == domain 30 score: -3.2 bits; conditional E-value: 0.59 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323204_2 1354 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1410 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 31 score: 0.0 bits; conditional E-value: 0.057 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323204_2 1387 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1444 599*****888888888876665555556677889999999888886799999*9998 PP == domain 32 score: -3.9 bits; conditional E-value: 0.99 DUF4705 7 srrpLqa...................paslqasglsr 24 s+rpL p++l +g s T323204_2 1482 SHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1518 5555544555555555555555555566666666553 PP == domain 33 score: -6.9 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa..........paslqasglsrpsaqLpvAsaGpklppa 41 A as++pL +++ +++ p+a +As+ p ++p+ T323204_2 1556 ALASHWPLPR*gqreplpqqAQLSPPR--RPPGAKSLPASRQPACSPV 1601 89******8899999886663333344..3344555667777777665 PP == domain 34 score: 2.8 bits; conditional E-value: 0.0079 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323204_2 1774 ARPLQ-THLQPPGVLSGPSS 1792 69***.99999999999987 PP == domain 35 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323204_2 1833 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1879 555699*******************6666666666666666666666 PP == domain 36 score: -6.0 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323204_2 1883 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1928 7888.666666654222222277778886577888865558888888 PP == domain 37 score: -13.8 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323204_2 1933 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1985 57899988888633334333677888999999999999888888999999998 PP == domain 38 score: 22.6 bits; conditional E-value: 4.9e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323204_2 2029 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 2062 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 9379.12 // Query: T323204_3 [L=2130] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-79 261.0 501.5 3.6e-17 62.2 8.0 44.9 43 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.2 0.17 2.8e+03 38 47 .. 54 63 .. 53 67 .. 0.81 2 ? -0.4 0.1 0.078 1.3e+03 7 34 .. 66 92 .. 61 94 .. 0.86 3 ! 34.3 7.1 1.1e-12 1.8e-08 3 49 .. 94 139 .. 92 140 .. 0.96 4 ! 30.9 7.0 1.3e-11 2e-07 1 38 [. 145 181 .. 145 191 .. 0.93 5 ! 24.0 4.6 1.9e-09 3.1e-05 5 38 .. 192 224 .. 186 233 .. 0.92 6 ! 22.7 6.2 4.7e-09 7.7e-05 5 38 .. 236 268 .. 235 270 .. 0.95 7 ! 10.7 3.2 2.6e-05 0.43 1 34 [. 264 292 .. 264 303 .. 0.77 8 ! 22.6 16.3 5.1e-09 8.3e-05 1 49 [. 306 353 .. 306 354 .. 0.99 9 ! 9.0 1.7 9.2e-05 1.5 8 40 .. 367 398 .. 365 401 .. 0.84 10 ! 11.1 12.5 2e-05 0.33 2 34 .. 392 423 .. 391 451 .. 0.59 11 ! 13.0 0.5 5.1e-06 0.083 16 35 .. 479 498 .. 472 499 .. 0.92 12 ! 31.3 8.9 9.6e-12 1.6e-07 2 50 .] 498 545 .. 497 545 .. 0.97 13 ? -1.7 0.1 0.19 3.1e+03 9 25 .. 547 572 .. 546 575 .. 0.56 14 ? 0.0 2.6 0.056 9.2e+02 1 33 [. 593 625 .. 593 627 .. 0.91 15 ! 15.0 6.5 1.2e-06 0.019 4 44 .. 629 686 .. 629 692 .. 0.97 16 ! 9.8 0.1 4.9e-05 0.8 14 37 .. 720 743 .. 711 748 .. 0.88 17 ! 24.0 2.8 1.8e-09 2.9e-05 18 50 .] 766 798 .. 744 798 .. 0.83 18 ! 4.7 0.8 0.0019 31 28 47 .. 828 847 .. 820 850 .. 0.85 19 ? 1.7 1.1 0.017 2.8e+02 7 27 .. 850 869 .. 848 874 .. 0.91 20 ? -0.4 0.1 0.08 1.3e+03 7 24 .. 871 887 .. 869 890 .. 0.87 21 ! 9.5 9.2 6.1e-05 1 6 38 .. 891 933 .. 887 939 .. 0.89 22 ! 10.4 6.3 3.4e-05 0.55 1 33 [. 941 972 .. 941 972 .. 0.95 23 ! 3.6 2.6 0.0042 69 19 43 .. 979 1004 .. 976 1006 .. 0.80 24 ! 14.9 13.5 1.3e-06 0.021 1 38 [. 994 1051 .. 994 1060 .. 0.87 25 ? 1.9 14.2 0.014 2.4e+02 1 49 [. 1047 1104 .. 1047 1105 .. 0.95 26 ? -1.1 7.4 0.13 2.1e+03 7 40 .. 1126 1157 .. 1124 1157 .. 0.79 27 ? 2.2 9.3 0.012 1.9e+02 3 26 .. 1155 1177 .. 1146 1177 .. 0.93 28 ! 15.2 1.9 1e-06 0.017 14 36 .. 1188 1210 .. 1179 1214 .. 0.91 29 ? 2.4 0.1 0.01 1.7e+02 27 39 .. 1213 1225 .. 1212 1229 .. 0.86 30 ! 5.6 11.9 0.001 16 1 38 [. 1220 1266 .. 1220 1274 .. 0.85 31 ! 16.0 2.3 5.8e-07 0.0094 1 26 [. 1295 1319 .. 1295 1321 .. 0.95 32 ? -1.5 4.4 0.17 2.7e+03 1 29 [. 1328 1366 .. 1328 1371 .. 0.77 33 ? 1.1 8.1 0.026 4.3e+02 7 46 .. 1378 1421 .. 1373 1423 .. 0.83 34 ? -4.0 4.7 1 1.6e+04 10 39 .. 1413 1439 .. 1412 1449 .. 0.53 35 ? -9.3 16.4 1 1.6e+04 14 50 .] 1576 1614 .. 1492 1614 .. 0.80 36 ! 13.3 9.7 4.1e-06 0.066 17 50 .] 1771 1804 .. 1749 1804 .. 0.85 37 ! 27.5 3.3 1.5e-10 2.4e-06 17 50 .] 1804 1837 .. 1803 1837 .. 0.96 38 ! 62.2 8.0 2.2e-21 3.6e-17 1 50 [] 1842 1891 .. 1842 1891 .. 0.99 39 ! 12.1 0.9 9.6e-06 0.16 25 44 .. 1887 1906 .. 1886 1907 .. 0.91 40 ! 10.4 5.1 3.2e-05 0.52 24 49 .. 1918 1942 .. 1912 1943 .. 0.80 41 ! 3.8 2.0 0.0037 60 26 39 .. 1941 1956 .. 1940 1965 .. 0.73 42 ? 2.3 0.7 0.011 1.8e+02 29 50 .] 1967 1989 .. 1967 1989 .. 0.86 43 ! 21.5 13.4 1.1e-08 0.00019 1 39 [. 1994 2054 .. 1994 2061 .. 0.95 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.17 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323204_3 54 LPPGSLSRPR 63 6889999985 PP == domain 2 score: -0.4 bits; conditional E-value: 0.078 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323204_3 66 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 92 567788.999**********99999877 PP == domain 3 score: 34.3 bits; conditional E-value: 1.1e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323204_3 94 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 139 689*******.************************************ PP == domain 4 score: 30.9 bits; conditional E-value: 1.3e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323204_3 145 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 181 9***********.***********************86 PP == domain 5 score: 24.0 bits; conditional E-value: 1.9e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323204_3 192 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 224 899*****.***********************98 PP == domain 6 score: 22.7 bits; conditional E-value: 4.7e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323204_3 236 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 268 9*******.***********************86 PP == domain 7 score: 10.7 bits; conditional E-value: 2.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323204_3 264 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 292 9***********5444.....4446888888887 PP == domain 8 score: 22.6 bits; conditional E-value: 5.1e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323204_3 306 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 353 9***********.************************************ PP == domain 9 score: 9.0 bits; conditional E-value: 9.2e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323204_3 367 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 398 57799..889999****************99544 PP == domain 10 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323204_3 392 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 423 9**********.666666666666666666553 PP == domain 11 score: 13.0 bits; conditional E-value: 5.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323204_3 479 PLPHSGPSRPRWCLTVASSG 498 69****************98 PP == domain 12 score: 31.3 bits; conditional E-value: 9.6e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323204_3 498 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 545 89*********.*********************************9887 PP == domain 13 score: -1.7 bits; conditional E-value: 0.19 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323204_3 547 RRLQDelilpvrlqARLLPHNNLLWS 572 56666666633333666666666555 PP == domain 14 score: 0.0 bits; conditional E-value: 0.056 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323204_3 593 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 625 89999*******888999999999999999988 PP == domain 15 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323204_3 629 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 686 88******************************************************97 PP == domain 16 score: 9.8 bits; conditional E-value: 4.9e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323204_3 720 AKLLPFGSLYRPSSCLAIAFVGQD 743 67899999**************95 PP == domain 17 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323204_3 766 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 798 455566899***********************9 PP == domain 18 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323204_3 828 LLQLASPDQALPPSGLYRPK 847 6889***************6 PP == domain 19 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323204_3 850 SSQPLQ-GQLLATGGFCRPKS 869 689***.***********986 PP == domain 20 score: -0.4 bits; conditional E-value: 0.08 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323204_3 871 SSQPLH-TQLLSVSGLCR 887 78****.*****999866 PP == domain 21 score: 9.5 bits; conditional E-value: 6.1e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323204_3 891 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 933 788999999999999999********************99888 PP == domain 22 score: 10.4 bits; conditional E-value: 3.4e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323204_3 941 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 972 8***********.*****9999999******98 PP == domain 23 score: 3.6 bits; conditional E-value: 0.0042 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323204_3 979 SRGLNGPSPCLSAASTGPAStSQWAL 1004 789999999*****999976566555 PP == domain 24 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323204_3 994 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1051 688888888888888888888888888888888**********************876 PP == domain 25 score: 1.9 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323204_3 1047 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1104 89999999*************9899******************************997 PP == domain 26 score: -1.1 bits; conditional E-value: 0.13 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323204_3 1126 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 1157 679***777899******98..667777777765 PP == domain 27 score: 2.2 bits; conditional E-value: 0.012 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323204_3 1155 RPPASRRPAQ-AQPQPHSGLSTPS 1177 66********.************7 PP == domain 28 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323204_3 1188 PKLLPLGRFGRPSSRLPVASSGP 1210 899*******************9 PP == domain 29 score: 2.4 bits; conditional E-value: 0.01 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323204_3 1213 SFLTTAFPGPVFP 1225 79*********97 PP == domain 30 score: 5.6 bits; conditional E-value: 0.001 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323204_3 1220 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1266 7888889**************766651678***************86 PP == domain 31 score: 16.0 bits; conditional E-value: 5.8e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323204_3 1295 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1319 9***********.9***********7 PP == domain 32 score: -1.5 bits; conditional E-value: 0.17 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323204_3 1328 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1366 8899998.77799988888888888888877776666666 PP == domain 33 score: 1.1 bits; conditional E-value: 0.026 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323204_3 1378 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1421 567799.9**********************997776446666655 PP == domain 34 score: -4.0 bits; conditional E-value: 1 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323204_3 1413 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1439 899.5555555..33444444455555442 PP == domain 35 score: -9.3 bits; conditional E-value: 1 DUF4705 14 paslqasglsrpsaqLpvAsa..GpklppagLsrPssCL 50 p s ++ gl ps +Lp+ s+ + lp +gL+ P CL T323204_3 1576 PSSRPHGGLPGPSPCLPPGSPraAQFLPHGGLLMPNACL 1614 88999999999*****99996225566********9998 PP == domain 36 score: 13.3 bits; conditional E-value: 4.1e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323204_3 1771 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1804 45568**************************987 PP == domain 37 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323204_3 1804 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1837 8999****************************87 PP == domain 38 score: 62.2 bits; conditional E-value: 2.2e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323204_3 1842 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1891 9***********************************************98 PP == domain 39 score: 12.1 bits; conditional E-value: 9.6e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323204_3 1887 SSSSLPAASAGLSCPQVGLE 1906 6899**************96 PP == domain 40 score: 10.4 bits; conditional E-value: 3.2e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323204_3 1918 GPSSV-LLASPGAKLPRVSLSRPSSS 1942 45555.579***************97 PP == domain 41 score: 3.8 bits; conditional E-value: 0.0037 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323204_3 1941 SSCLPVASFGPAQlmA 1956 89*********86443 PP == domain 42 score: 2.3 bits; conditional E-value: 0.011 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323204_3 1967 LLVASSGPELdLQSAFAGPASCL 1989 789*******8677888999998 PP == domain 43 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323204_3 1994 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 2054 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2130 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 9521.20 // Query: T295129_1 [L=1465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 275 (0.016865); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.73 # Mc/sec: 5741.25 // Query: T295129_2 [L=1465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 6652.56 // Query: T295129_3 [L=1464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 6980.43 // Query: T242257_1 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 7180.68 // Query: T242257_2 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 7978.54 // Query: T242257_3 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.61 # Mc/sec: 8240.13 // Query: T143310_1 [L=3408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.65 # Mc/sec: 14999.55 // Query: T143310_2 [L=3408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.81 # Mc/sec: 12036.68 // Query: T143310_3 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.68 # Mc/sec: 14333.60 // Query: T336745_1 [L=392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 1900.75 // Query: T336745_2 [L=392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 1838.44 // Query: T336745_3 [L=392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.54 # Mc/sec: 2076.75 // Query: T180252_1 [L=5540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.82 10.1 18.9 2.3 8.7 18.9 1.7 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 18.9 0.00014 2.3 67 97 .. 486 521 .. 454 522 .. 0.67 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00014 PRP38_assoc 67 tp......rdrdrardRdrrrskrsreRdrsrsrdrd 97 +p r+r+r+r+R+r+r+ r+reR+r+r+r+r+ T180252_1 486 RPwkvrgeRERGRERERQRQRE-RERERERERERERE 521 3344444478888888888877.77777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.00u 0.38s 00:00:02.38 Elapsed: 00:00:00.87 # Mc/sec: 18217.24 // Query: T180252_2 [L=5539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.36s 00:00:02.36 Elapsed: 00:00:00.95 # Mc/sec: 16680.14 // Query: T180252_3 [L=5539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.36s 00:00:02.27 Elapsed: 00:00:01.00 # Mc/sec: 15846.14 // Query: T359859_1 [L=5362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.1 0.1 3.1 7.5 0.0 3.6 3 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.12 2e+03 13 26 .. 433 446 .. 424 446 .. 0.81 2 ? 7.5 0.0 0.00019 3.1 7 31 .. 536 560 .. 536 560 .. 0.93 3 ? 1.6 0.0 0.014 2.3e+02 19 33 .. 1140 1154 .. 1140 1156 .. 0.68 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.12 TEEEETTEEE-TTE CS Hexapep 13 faviggnVkIGdnv 26 +++++++V +G+++ T359859_1 433 GVHLRPDVCLGPDC 446 79999999999998 PP == domain 2 score: 7.5 bits; conditional E-value: 0.00019 TEEE-TTEEEETTEEE-TTEEEETT CS Hexapep 7 nvlIgpfaviggnVkIGdnvkIgag 31 +v+++p +++ ++V++G +v++ +g T359859_1 536 DVHLWPRVHLVPDVHLGHGVHLRPG 560 6899*****************9986 PP == domain 3 score: 1.6 bits; conditional E-value: 0.014 TEEE-TTEEEETTEE CS Hexapep 19 nVkIGdnvkIgagvv 33 +V++G++v I agv T359859_1 1140 GVHLGPDVQIRAGVL 1154 577777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.63u 0.34s 00:00:01.97 Elapsed: 00:00:00.63 # Mc/sec: 24348.84 // Query: T359859_2 [L=5361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.1 0.1 66 3.3 0.0 4.8 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.2 3.2e+03 6 20 .. 480 494 .. 479 494 .. 0.56 2 ? 3.3 0.0 0.0041 66 4 24 .. 740 760 .. 737 768 .. 0.63 3 ? 2.4 0.1 0.0077 1.3e+02 13 29 .. 877 893 .. 875 894 .. 0.83 4 ? 1.2 0.0 0.018 3e+02 10 32 .. 1855 1877 .. 1842 1881 .. 0.52 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.2 TTEEE-TTEEEETTE CS Hexapep 6 snvlIgpfaviggnV 20 s+v++gp +++g+ + T359859_2 480 SGVQLGPAVHLGPWC 494 556666666666654 PP == domain 2 score: 3.3 bits; conditional E-value: 0.0041 E-TTEEE-TTEEEETTEEE-T CS Hexapep 4 IGsnvlIgpfaviggnVkIGd 24 + +v++gp++++++++ + T359859_2 740 LRPDVQLGPGVHLRHDAYLKL 760 456777888888888776655 PP == domain 3 score: 2.4 bits; conditional E-value: 0.0077 TEEEETTEEE-TTEEEE CS Hexapep 13 faviggnVkIGdnvkIg 29 +++g+ V+IG++v ++ T359859_2 877 SVYLGSSVHIGSDVNLE 893 689999******99875 PP == domain 4 score: 1.2 bits; conditional E-value: 0.018 E-TTEEEETTEEE-TTEEEETTE CS Hexapep 10 IgpfaviggnVkIGdnvkIgagv 32 +gp ++ g+ V++G +v +g+ v T359859_2 1855 LGPDVYSGSAVHLGQGVFLGPRV 1877 34444445555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:00.89 # Mc/sec: 17232.48 // Query: T359859_3 [L=5361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.063 12.9 0.0 17 5.2 0.0 3.3 3 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.14 2.4e+03 10 26 .. 807 823 .. 804 824 .. 0.62 2 ? 5.2 0.0 0.001 17 14 32 .. 902 920 .. 899 921 .. 0.62 3 ? 3.5 0.0 0.0036 59 12 32 .. 1120 1140 .. 1117 1140 .. 0.89 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.14 E-TTEEEETTEEE-TTE CS Hexapep 10 IgpfaviggnVkIGdnv 26 ++p++ +g+ V +G++v T359859_3 807 LWPNVLLGSSVLLGPDV 823 56666666666666666 PP == domain 2 score: 5.2 bits; conditional E-value: 0.001 EEEETTEEE-TTEEEETTE CS Hexapep 14 aviggnVkIGdnvkIgagv 32 +++g++V +G++v +++g+ T359859_3 902 VQLGPDVRLGPGVNLEHGC 920 5666666666666666665 PP == domain 3 score: 3.5 bits; conditional E-value: 0.0036 TTEEEETTEEE-TTEEEETTE CS Hexapep 12 pfaviggnVkIGdnvkIgagv 32 +++++ ++V +G++v+ ++g+ T359859_3 1120 AGVHLESHVYLGPDVHMEPGS 1140 799************999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.56u 0.36s 00:00:01.92 Elapsed: 00:00:00.73 # Mc/sec: 21009.47 // Query: T043286_1 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 6392.65 // Query: T043286_2 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6163.33 // Query: T043286_3 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 6163.33 // Query: T183234_1 [L=5596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.57 # Mc/sec: 27602.08 // Query: T183234_2 [L=5595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.56 # Mc/sec: 28582.76 // Query: T183234_3 [L=5595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.32s 00:00:01.67 Elapsed: 00:00:00.57 # Mc/sec: 27597.14 // Query: T235283_1 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 8485.22 // Query: T235283_2 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 8318.84 // Query: T235283_3 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 8153.37 // Query: T236374_1 [L=2883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.54 # Mc/sec: 15273.65 // Query: T236374_2 [L=2883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 14728.17 // Query: T236374_3 [L=2882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 14990.75 // Query: T317734_1 [L=1071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6007.74 // Query: T317734_2 [L=1071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 6252.96 // Query: T317734_3 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 6512.95 // Query: T329689_1 [L=965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5413.14 // Query: T329689_2 [L=965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5521.40 // Query: T329689_3 [L=964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 5515.68 // Query: T381527_1 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.62 # Mc/sec: 23906.39 // Query: T381527_2 [L=5180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.35s 00:00:02.04 Elapsed: 00:00:00.62 # Mc/sec: 23901.77 // Query: T381527_3 [L=5180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.29s 00:00:01.67 Elapsed: 00:00:00.62 # Mc/sec: 23901.77 // Query: T184599_1 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 4028.52 // Query: T184599_2 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3870.53 // Query: T184599_3 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.032 14.2 3.2 11 6.0 0.2 3.7 2 Elf1 Transcription elongation factor Elf1 like Domain annotation for each model (and alignments): >> Elf1 Transcription elongation factor Elf1 like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.1 0.0026 42 14 36 .. 190 212 .. 181 251 .. 0.71 2 ? 6.0 0.2 0.00067 11 14 38 .. 292 316 .. 280 321 .. 0.78 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0026 Elf1 14 kkkklptkFdCpfCnheksvevk 36 ++ +l+++F+ C +e+s++++ T184599_3 190 RSAQLKSAFRSQLCTAETSIQIS 212 44558899999999999998886 PP == domain 2 score: 6.0 bits; conditional E-value: 0.00067 Elf1 14 kkkklptkFdCpfCnheksvevkld 38 ++ + + +F+C C ++s+++++ T184599_3 292 SSAQPQPAFRCQLCTTTTSIQISIL 316 44557889*************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4028.52 // Query: T144121_1 [L=230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1450 (0.0889243); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 1370.81 // Query: T144121_2 [L=230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 1370.81 // Query: T144121_3 [L=229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 724 (0.0444008); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 1337.00 // Query: T373246_1 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1031 (0.0632283); expected 326.1 (0.02) Passed bias filter: 290 (0.0177849); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.42s 00:00:01.99 Elapsed: 00:00:00.64 # Mc/sec: 7858.34 // Query: T373246_2 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 8823.40 // Query: T373246_3 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 962 (0.0589967); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 97 (0.00594873); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.55 # Mc/sec: 9139.05 // Query: T067413_1 [L=3292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 16817.59 // Query: T067413_2 [L=3292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 17123.37 // Query: T067413_3 [L=3292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0025 17.3 0.2 0.0054 16.2 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.2 3.3e-07 0.0054 2 17 .. 3155 3170 .. 3155 3170 .. 0.98 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 3.3e-07 DUF1725 2 FagKWMELEnIILSEi 17 Fa++WM E+IILSEi T067413_3 3155 FATTWMNPEDIILSEI 3170 9**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 16522.55 // Query: T260679_1 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.22s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6619.96 // Query: T260679_2 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 5092.28 // Query: T260679_3 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 6365.35 // Query: T008671_1 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 6681.14 // Query: T008671_2 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 7237.90 // Query: T008671_3 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 7754.89 // Query: T165307_1 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 3374.72 // Query: T165307_2 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.76 9.8 3.5 1.7 8.6 0.1 2.7 2 zf-C2H2_7 Zinc-finger Domain annotation for each model (and alignments): >> zf-C2H2_7 Zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.7 0.038 6.2e+02 2 15 .. 37 50 .. 36 55 .. 0.85 2 ? 8.6 0.1 0.00011 1.7 7 17 .. 199 209 .. 196 232 .. 0.77 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.038 zf-C2H2_7 2 erkPkkPhyiPrPp 15 +r+ +kPh P P T165307_2 37 GRRGRKPHGCPHPG 50 7999*******996 PP == domain 2 score: 8.6 bits; conditional E-value: 0.00011 zf-C2H2_7 7 kPhyiPrPpGk 17 Ph+ PrP+G+ T165307_2 199 APHFFPRPWGQ 209 6*********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3644.70 // Query: T165307_3 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 3438.39 // Query: T086906_1 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-19 70.2 6.0 9.7e-19 67.3 2.3 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.5 0.1 0.00065 11 392 420 .. 1451 1479 .. 1446 1487 .. 0.71 2 ! 67.3 2.3 5.9e-23 9.7e-19 465 560 .. 1523 1613 .. 1522 1613 .. 0.86 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.00065 XX...XXXXXXXXXXX...XXXXXXXXXXXXX CS TLV_coat 392 kRepvaltlallLgGL...giaagvgtGttgl 420 kR + l++lL+GL + ++++gtG++g+ T086906_1 1451 KR---VIPLIPLLVGLglsASTTALGTGIAGI 1479 55...688********4444456778888887 PP == domain 2 score: 67.3 bits; conditional E-value: 5.9e-23 HHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 465 LDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqli 560 L lL+ e+G lC L+EeCCFy ++sg+v d+i+kL++r ++ + ++n + + + w++++l +pL+ + ++Ll+GPc++ + q+i T086906_1 1523 LNLLTTEKGELCIFLNEECCFYLNQSGLVYDNIKKLKDRAQKLTNQANNNVEPPWTRSNWTSWVLPIL----SPLIPI-FLLLFGPCVFCLVSQFI 1613 78*************************************98877777777665335678888999988....999875.6688******9999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.23s 00:00:00.98 Elapsed: 00:00:00.50 # Mc/sec: 10539.30 // Query: T086906_2 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00025 20.5 0.1 0.00042 19.8 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.1 2.5e-08 0.00042 122 184 .. 435 495 .. 410 511 .. 0.71 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.5e-08 ..TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHH CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqell 184 +++ ++++lpqG+ SP f+ ++++ l +++ ++++Y+DD+l++ + ++ q l T086906_2 435 HQSQQLTWAVLPQGFRDSPHYFSQALSHDLLSFHPS--TSHVIQYIDDLLFSPSFDSSQQDTL 495 448999******************999888888875..79*********98766655544333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 8499.43 // Query: T086906_3 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-18 64.6 0.0 1.4e-17 64.1 0.0 1.2 1 RNase_H RNase H 0.004 17.3 0.0 0.0082 16.3 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.1 0.0 1.8e-21 1.4e-17 3 142 .. 770 914 .. 768 915 .. 0.79 Alignments for each domain: == domain 1 score: 64.1 bits; conditional E-value: 1.8e-21 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 +++++ DGs+ + +++ag+ ++++ + +a+l++ t +a L+A++ L a ++ +vniytDSkY+++ +++ w +++ t++ +++ T086906_3 770 DHTWFIDGSSTTPnrHTPAKAGYaIVPST-SIIEAAALPPSATSRQAKLIALTRTLTlA--KELCVNIYTDSKYAFHILHHHAVIWAERGFLTKQGWSNI 866 579******9876346667****788877.34555788899***************977..899*************88888888888887665555544 PP TTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 99 knkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 + + llk++ +k+ + h+kgH+ ++gN+ aD++Akeaa T086906_3 867 NASLIKTLLKATLLPKEAGVIHCKGHQKAsdpiAQGNTYADKIAKEAA 914 44444555566666************555568889***********98 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 1e-06 0.0082 62 100 .. 220 256 .. 195 257 .. 0.74 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1e-06 EEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 62 ievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +l+++ fr+ ++++p++pv+llG d+L+kl + L T086906_3 220 LWCRLGQHSFRH--CFFVIPTCPVPLLGQDILTKLSASL 256 445678888888..99*******************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.59 # Mc/sec: 8931.61 // Query: T198709_1 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 3879.69 // Query: T198709_2 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-07 28.7 0.0 1.9e-06 27.5 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.0 1.1e-10 1.9e-06 44 80 .] 125 161 .. 99 161 .. 0.91 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 1.1e-10 Transposase_1 44 yyeflppgetitsevYaqqldklrqklqekrpalvnr 80 +fl+p+eti se+ aqq +++++kl +++pal+nr T198709_2 125 RPSFLNPSETIRSEKNAQQVNEMHRKLPRLQPALINR 161 449*******************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 3510.19 // Query: T198709_3 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 3685.70 // Query: T004125_1 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.69 # Mc/sec: 5236.56 // Query: T004125_2 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1651 (0.101251); expected 326.1 (0.02) Passed bias filter: 374 (0.0229363); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.61 # Mc/sec: 5923.33 // Query: T004125_3 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 6943.01 // Query: T164820_1 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.64 # Mc/sec: 14456.13 // Query: T164820_2 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00097 19.6 0.0 0.0017 18.8 0.0 1.3 1 MgtE_N MgtE intracellular N domain Domain annotation for each model (and alignments): >> MgtE_N MgtE intracellular N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 1e-07 0.0017 8 91 .. 2365 2448 .. 2364 2454 .. 0.89 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 1e-07 HCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHHHH CS MgtE_N 8 elleelpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeere 91 ++l+++++++ +++l+ ++ +++ +l+++d++ + ++++++ ++ +++l ++d ++ +l++++ + +++l+ +d + + T164820_2 2365 HILKDINYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQGHKHILKDIDYRRHK 2448 689999999999999999999999999999999999999999999999999999999999999999999999999999877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.86 # Mc/sec: 10754.72 // Query: T164820_3 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.74 # Mc/sec: 12498.73 // Query: T051660_1 [L=2234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 10651.82 // Query: T051660_2 [L=2234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.63 # Mc/sec: 10144.59 // Query: T051660_3 [L=2234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 9538.95 // Query: T210760_1 [L=810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1335 (0.0818717); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.31s 00:00:01.84 Elapsed: 00:00:00.81 # Mc/sec: 2860.83 // Query: T210760_2 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1285 (0.0788053); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.63 # Mc/sec: 3673.67 // Query: T210760_3 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1148 (0.0704035); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.73 # Mc/sec: 3170.43 // Query: T131526_1 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 7982.64 // Query: T131526_2 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 32 (0.00196247); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 7609.81 // Query: T131526_3 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 8528.23 // Query: T194245_1 [L=3436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 844 (0.0517601); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.74 # Mc/sec: 13283.53 // Query: T194245_2 [L=3436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.69 # Mc/sec: 14246.10 // Query: T194245_3 [L=3436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.75 # Mc/sec: 13106.42 // Query: T155876_1 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 3383.95 // Query: T155876_2 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.70 # Mc/sec: 3383.95 // Query: T155876_3 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4229.94 // Query: T221664_1 [L=3688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:00.72 # Mc/sec: 14653.81 // Query: T221664_2 [L=3687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.36s 00:00:01.87 Elapsed: 00:00:00.74 # Mc/sec: 14253.89 // Query: T221664_3 [L=3687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.36s 00:00:02.12 Elapsed: 00:00:00.90 # Mc/sec: 11719.87 // Query: T077409_1 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 6688.89 // Query: T077409_2 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 5772.61 // Query: T077409_3 [L=1473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6688.89 // Query: T370531_1 [L=2009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.64 # Mc/sec: 8980.32 // Query: T370531_2 [L=2009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 7562.38 // Query: T370531_3 [L=2008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.72 # Mc/sec: 7978.54 // Query: T125930_1 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 4915.00 // Query: T125930_2 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 4608.14 // Query: T125930_3 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 4910.31 // Query: T001436_1 [L=3232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 623 (0.0382068); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.47s 00:00:02.46 Elapsed: 00:00:00.78 # Mc/sec: 11854.11 // Query: T001436_2 [L=3232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.40s 00:00:01.93 Elapsed: 00:00:00.70 # Mc/sec: 13208.86 // Query: T001436_3 [L=3231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.71 # Mc/sec: 13018.79 // Query: T198069_1 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.62 # Mc/sec: 2390.18 // Query: T198069_2 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2390.18 // Query: T198069_3 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 2240.98 // Query: T233460_1 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 1635.44 // Query: T233460_2 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.60 # Mc/sec: 1635.44 // Query: T233460_3 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.49 # Mc/sec: 2002.58 // Query: T376191_1 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-165 549.4 20.6 6.7e-165 549.4 20.6 1.7 2 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.5 0.22 3.7e+03 339 368 .. 333 362 .. 332 398 .. 0.80 2 ! 549.4 20.6 4.1e-169 6.7e-165 1 425 [. 792 1199 .. 792 1202 .. 0.98 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.22 DUF4641 339 pvpkaqlpthrpgppclsvhrgEfssGdln 368 p++ +q+p+ p p+++ + + ssG+l T376191_1 333 PGLTVQVPACSPPPRSKPALQTDTSSGELM 362 677899999999999999999999999975 PP == domain 2 score: 549.4 bits; conditional E-value: 4.1e-169 DUF4641 1 egrpgspvddeedaldflsqladEaaaivqqlsdldargvrrnpspescaaelsa.lwadleagpsgRgalalssveskqasaaplhlsglergrawg 97 egrpg+pvdd+ ++ d++++ladE+a+i+++ s v+ +pspe+++a+ s+ +wadle+gps+Rgal++s++e++qasa+plhls+++ g+aw+ T376191_1 792 EGRPGTPVDDQAGGGDYSFYLADEPATIMPPSS------VQGHPSPEGATAKGSTdIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWE 883 8********************************......*********************************************************** PP DUF4641 98 npkrgtksrmvvsedvqrps.eeglvglpsdsessDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvv 194 np+rg+ksr+++++d+q+ps e+++ +++ds+s+DE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vv T376191_1 884 NPERGSKSRLSFQVDPQQPSaEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVV 981 ********************66667778899******************************************************************* PP DUF4641 195 erqavgElessssKKmqsvvwgkggsrPSypgatAaaaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLl 292 er+avgEl++ s KKmqs+vwgk+g+rPS++ga a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+Ll T376191_1 982 ERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA-----AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLL 1074 *********************************.....9*********************************************************** PP DUF4641 293 GkskkvsllpsgpkqskhtgtGKksvarktresqavakeDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlP 390 Gks + pk++kh+++GKk+++rktresqa+a+eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++P T376191_1 1075 GKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVP 1165 ***99.......************************************************************************************** PP DUF4641 391 RgpapSgdqeppvrpprpeeqqqppqGaqgCprcv 425 R +a Sgd++ppv+pprpe+qqqpp GaqgCpr + T376191_1 1166 RCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRVM 1199 ******************7777766.*******86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 7515.18 // Query: T376191_2 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6737.75 // Query: T376191_3 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 6298.44 // Query: T325648_1 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.74 # Mc/sec: 908.51 // Query: T325648_2 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.67 # Mc/sec: 1003.43 // Query: T325648_3 [L=234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0075 16.6 0.0 0.011 16.1 0.0 1.2 1 Phospho_p8 DNA-binding nuclear phosphoprotein p8 Domain annotation for each model (and alignments): >> Phospho_p8 DNA-binding nuclear phosphoprotein p8 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 6.5e-07 0.011 3 44 .. 47 88 .. 45 89 .. 0.85 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 6.5e-07 Phospho_p8 3 lfDeyeyYnlddkeiegggsgKgRtKkEasehtnrpdPsGHe 44 l+ + yY l+ ++g g++Kg t +E++++t+r +P+GH+ T325648_3 47 LYRCLYYYCLRYFPACGVGRSKGLTLSEQALRTKRLSPGGHV 88 5556667888888899999**********************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.74 # Mc/sec: 904.64 // Query: T143048_1 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.66 # Mc/sec: 2201.97 // Query: T143048_2 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 2549.65 // Query: T143048_3 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.52 # Mc/sec: 2794.81 // Query: T314162_1 [L=4762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.45s 00:00:02.13 Elapsed: 00:00:00.77 # Mc/sec: 17692.56 // Query: T314162_2 [L=4762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.65 # Mc/sec: 20958.88 // Query: T314162_3 [L=4761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.25s 00:00:01.39 Elapsed: 00:00:00.54 # Mc/sec: 25222.98 // Query: T258130_1 [L=1006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 5643.13 // Query: T258130_2 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 5750.27 // Query: T258130_3 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.21s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5637.52 // Query: T039900_1 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 51 (0.00312768); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 1895.30 // Query: T039900_2 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1856.62 // Query: T039900_3 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 1856.62 // Query: T052575_1 [L=4021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.26s 00:00:01.41 Elapsed: 00:00:00.56 # Mc/sec: 20181.40 // Query: T052575_2 [L=4021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.29s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 20181.40 // Query: T052575_3 [L=4020] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4020 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 20536.67 // Query: T228080_1 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 5881.87 // Query: T228080_2 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 6001.90 // Query: T228080_3 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6001.90 // Query: T164592_1 [L=6205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.32s 00:00:01.79 Elapsed: 00:00:00.62 # Mc/sec: 28631.37 // Query: T164592_2 [L=6205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.31s 00:00:01.79 Elapsed: 00:00:00.60 # Mc/sec: 29585.75 // Query: T164592_3 [L=6204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.57 # Mc/sec: 30601.02 // Query: T161228_1 [L=1681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-06 26.3 0.8 9e-06 25.4 0.8 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.063 13.4 0.0 0.11 12.6 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 0.8 1.1e-09 9e-06 3 106 .. 488 596 .. 486 606 .. 0.84 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 1.1e-09 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ss 89 ++Y p++ +l+ ++++l++l + l+s ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf se + s T161228_1 488 TLNIYAPNTG-TLRFIKQALRDLQRHLDS-HTIIMGDFNTPLSTIDRSTRQKvNKDIQELNSALHQADLIDIhrtLHPKSTeCTFFSEPH*tYS 579 6799**9999.9999*******9999997.8**************99887779***************9966555445555599999998999* PP Exo_endo_phos_2 90 iiDltltsdnlakslel 106 iD ++ s+ l+ +++ T161228_1 580 KIDHIVGSKALLSKCKR 596 ********999998433 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 1.4e-05 0.11 60 97 .. 445 590 .. 391 605 .. 0.80 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 1.4e-05 STTSSEEEEEECSEEEEE......................................................EEEEEE-SS............... CS xxxxxxxxxxxxxxxxxx......................................................xxxxxxxxx............... RF Exo_endo_phos 60 gkgqggvavlsrfpltsl......................................................vivlGDfNa............... 86 +k++ gva+l++ + + + i++GDfN+ T161228_1 445 TKKKAGVAILVSDKTDFKttkikrdkeghyimvkgsilqeelttlniyapntgtlrfikqalrdlqrhldshTIIMGDFNTplstidrstrqkvnk 540 456677777777777444456677777777777777777788888888889999998999999999999999*********999888888888888 PP .......................................-BEEEEEEHHH CS .......................................xxxxxxxxxxx RF Exo_endo_phos 87 .......................................rlDrilaskel 97 +D+i+ sk+l T161228_1 541 diqelnsalhqadlidihrtlhpkstectffseph*tysKIDHIVGSKAL 590 88888888888888888888888888888888888888888999888744 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 9248.18 // Query: T161228_2 [L=1680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-103 346.4 7.3 2.9e-103 345.4 7.3 1.5 1 Transposase_22 L1 transposable element 1.1e-18 67.4 0.8 1.1e-08 34.8 0.0 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 345.4 7.3 3.6e-107 2.9e-103 139 367 .. 121 351 .. 100 352 .. 0.97 Alignments for each domain: == domain 1 score: 345.4 bits; conditional E-value: 3.6e-107 .XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 139 aslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 +s+ssr d++eervs +ed+ +e++ e k+rekr+k +eqslq+i+++vkrPnl liGv es+ e+++klen+l++ii++n+Pnl+++an++iq T161228_2 121 TSFSSRFDQVEERVSVIEDQTNEMK*EE-KFREKRVKGNEQSLQEIWEYVKRPNLCLIGVSESDGENGTKLENTLQDIIQQNLPNLARQANIQIQ 214 699*********************7776.9***************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGe 327 ei+r P+r++s+ra++rhii r+tkv++k+k+l+a+rekG+vt kGkP r+tadl aetl+a+rew+++++i ek+fqPr++y akls+i++Ge T161228_2 215 EIQRMPQRYSSRRATPRHIIARFTKVEMKEKMLRAAREKGQVTHKGKPFRITADLLAETLQAKREWGPIFNIPEEKNFQPRISYTAKLSFISEGE 309 *********************************************************************************************** PP EEEESSHHHHHHHHTT-HHH.HHHHTT..T-SSXSSXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPal.krllke..knerkdryqaleqa 367 ik f dk++lrd+++tr al + llke ++er++ryq+l++ T161228_2 310 IKSFTDKQMLRDFVTTRHAL*E-LLKEalNMERNNRYQPLQKD 351 *******************888.667779***********986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.3 2.5e-11 2.1e-07 1 65 [. 892 965 .. 892 971 .. 0.86 2 ! 34.8 0.0 1.3e-12 1.1e-08 158 222 .] 1067 1148 .. 1049 1148 .. 0.85 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 2.5e-11 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkk 65 ipK+g ++++Rpi l++++ +lnk++a+ ++++++kl++++q+gf pg + + ++ ++++++++ k T161228_2 892 IPKPGrnttkKENFRPIFLMNTNANILNKILANLIQQYIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRTK 965 899999999999**********************************************9997755555553333 PP == domain 2 score: 34.8 bits; conditional E-value: 1.3e-12 ....TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 akgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+kin +K++++l+ s+ s++++yLG++l T161228_2 1067 KEEVKLSLFADDMMVYLENpIVSAQNLLKLKSNFSKVSGCKINVQKSQAFLYtnnrqtegqimSElpltiASKRIRYLGIQL 1148 379****************6666***************************99999888776661166778*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 8738.54 // Query: T161228_3 [L=1680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-17 63.3 0.0 3.4e-17 62.6 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.6 0.0 2.1e-21 3.4e-17 65 158 .. 965 1058 .. 962 1072 .. 0.94 Alignments for each domain: == domain 1 score: 62.6 bits; conditional E-value: 2.1e-21 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 k+k+++++++D +k Fd+++ ++ l++l++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG+ lSPllfn++++ l r +r++ T161228_3 965 KTKKHMIISIDGEKVFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGIRQGCSLSPLLFNIALEFLARAIRQEK 1058 67899****************************************************99********************************963 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 9423.91 // Query: T097015_1 [L=2286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-30 106.4 0.0 2.2e-30 105.9 0.0 1.1 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.9 0.0 1.4e-34 2.2e-30 1 155 [. 100 259 .. 100 264 .. 0.89 Alignments for each domain: == domain 1 score: 105.9 bits; conditional E-value: 1.4e-34 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekll..arvgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmq 95 +k Lk+lk+a+ qygp sp v l++++ + p d+e+l+ ++s++l+ +++w +e ++ r +a+ p++i+sd+llg+gq + +q m+ T097015_1 100 FKILKDLKQAIGQYGPDSPCVHSLLQSVTYNRrlKPMDWESLA*sTLSPSQFLQfKTWWMDESTNQ-ACRNAQAQTPVNITSDQLLGIGQAWGTLNQQMV 198 689**************************998878999999977577*******9***********.444444557**************6655555554 PP Gag_p24 96 n.vevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladeka 155 e+ q+r+++l+a+eki +g++ +s++++rQGp Epy+df+ l++a++k + d +a T097015_1 199 MgDEAADQLRTICLRAWEKIHYPGTTYPSFNSVRQGPSEPYPDFITHLQDAAQKAILDSHA 259 446***************************************************9988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12110.85 // Query: T097015_2 [L=2286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-51 172.1 0.2 1.2e-50 171.5 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 0.00064 19.6 0.7 0.0012 18.7 0.7 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 171.5 0.2 1.4e-54 1.2e-50 1 168 [. 384 555 .. 384 556 .. 0.89 Alignments for each domain: == domain 1 score: 171.5 bits; conditional E-value: 1.4e-54 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnw.lvevptvspisrftyhmvsgmslrp..rvny 94 +vtw+d p+evyvndsvw+pgp+d r p++peeegm++n+sigy++ppiclg a gcl q +v vp s+ + h +sg +++ +y T097015_2 384 PVTWLDSPVEVYVNDSVWMPGPTDKRGPTHPEEEGMLMNVSIGYHFPPICLGLAAGCLNYNKQ-S*MVYVPAH-NGSKASIHAISGRTFQSwdTTKY 478 69********************************************************87665.455789976.4689999*****99886225677 PP HERV-K_env_2 95 lqd...fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 l+ +++++ kf+p+ kpc ++ k s + e l we+c+ansav+lqnn +g iidwaprg+f nc+gq + c T097015_2 479 LEHsyvMTHHQINKFKPNKKPCLRQATKLSGKLEGLTWEDCIANSAVVLQNNSYGIIIDWAPRGRFAVNCTGQHEDC 555 7642223456678************************************************************9998 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.7 1.5e-07 0.0012 24 87 .] 313 374 .. 310 374 .. 0.85 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.5e-07 HERV-K_REC 24 tkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 +++a pptw q+k+++ +a l t +++a + ++s+ v+l++ e +++y++ T097015_2 313 ARQATPPTWGQMKRVAPIAEENLRSQNKPLTISNLMVAMMAVISLAVSLAVA--ETDQNYTYWP 374 5789*******************99999999888888888899999998765..5556888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12110.85 // Query: T097015_3 [L=2285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-14 54.1 5.8 3.2e-14 53.1 5.8 1.4 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.048 11.8 0.1 0.068 11.3 0.1 1.1 1 Fusion_gly Fusion glycoprotein F0 Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.1 5.8 4e-18 3.2e-14 2 110 .. 754 861 .. 753 864 .. 0.93 Alignments for each domain: == domain 1 score: 53.1 bits; conditional E-value: 4e-18 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnnt 100 aav+l ++q+a +v++ +kn k + Q +id+kl +++n l + v+ +G+ +++l+++++++C n C+T+ yna+e W +++hl+g + T097015_3 754 AAVALHSSIQTAGFVDSWQKNSSKLWNSQSQIDQKLANQINDLCQTVIWMGDWIMNLEHRIQMQCDWNTSDFCITHSSYNATEhHWAMIRHHLQGK--ED 851 799*******************************************************************************************95..55 PP HHHHHHHHHH CS GP41 101 evsldlsklh 110 ++ ld++kl+ T097015_3 852 NLTLDIAKLK 861 6666666665 PP >> Fusion_gly Fusion glycoprotein F0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.1 8.3e-06 0.068 81 157 .. 727 807 .. 703 835 .. 0.70 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 8.3e-06 XSSSSXCCCXXEEEHHHHXEEEHHHHHHHHHHHHHHHHHHHHHCC.HHH..HHCHHCCC.CCCCHCCCHCCCCCCCCHHHH CS Fusion_gly 81 sskrkkrflGvvlgaiAlgvAtaAqitAgiAlakalknaeeiakl.kes..lektnkAv.eklqngvselvlavnalqdyi 157 +r krf+ ++++i +A+ A +A++Al+ +++ a+ +++ k+s l ++ + +kl n + l v + d+i T097015_3 727 ILNRSKRFIFTLIAVILGLIAVTATAAAAVALHSSIQTAGFVDSWqKNSskLWNSQSQIdQKLANQINDLCQTVIWMGDWI 807 56799****999*9766568*******************999876244422334444443456666666666666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.68 # Mc/sec: 9613.23 // Query: T317336_1 [L=2036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.65 # Mc/sec: 8961.00 // Query: T317336_2 [L=2036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 9101.02 // Query: T317336_3 [L=2036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 8441.52 // Query: T289500_1 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 5285.72 // Query: T289500_2 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 4821.95 // Query: T289500_3 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 5366.36 // Query: T184489_1 [L=375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 1730.34 // Query: T184489_2 [L=374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1813.48 // Query: T184489_3 [L=374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.50 # Mc/sec: 2139.90 // Query: T018600_1 [L=3183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.41s 00:00:01.68 Elapsed: 00:00:00.70 # Mc/sec: 13008.60 // Query: T018600_2 [L=3182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 12470.08 // Query: T018600_3 [L=3182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 28.2 0.5 2.4e-06 27.6 0.5 1.2 1 KSR1-SAM SAM like domain present in kinase suppressor RAS 1 Domain annotation for each model (and alignments): >> KSR1-SAM SAM like domain present in kinase suppressor RAS 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.5 1.4e-10 2.4e-06 1 38 [. 2663 2700 .. 2663 2704 .. 0.95 Alignments for each domain: == domain 1 score: 27.6 bits; conditional E-value: 1.4e-10 KSR1-SAM 1 leiiqslidisaekLeglRtqCatsadltqqeiRaLEs 38 + +q+li i + +L gl t+Ca+s+dltqqei +LE T018600_3 2663 CGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQEIQTLEV 2700 7789********************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.75 # Mc/sec: 12137.55 // Query: T050188_1 [L=4439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.34s 00:00:01.89 Elapsed: 00:00:00.78 # Mc/sec: 16281.06 // Query: T050188_2 [L=4439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.39s 00:00:02.12 Elapsed: 00:00:00.73 # Mc/sec: 17396.20 // Query: T050188_3 [L=4438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.39s 00:00:02.09 Elapsed: 00:00:00.81 # Mc/sec: 15674.52 // Query: T123299_1 [L=2936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.69 # Mc/sec: 12173.04 // Query: T123299_2 [L=2935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 11346.67 // Query: T123299_3 [L=2935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.66 # Mc/sec: 12722.02 // Query: T052865_1 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 5711.96 // Query: T052865_2 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5349.30 // Query: T052865_3 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 5349.30 // Query: T332114_1 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.71 # Mc/sec: 3868.16 // Query: T332114_2 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 4291.24 // Query: T332114_3 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 4650.06 // Query: T264771_1 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 3794.12 // Query: T264771_2 [L=808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 3985.43 // Query: T264771_3 [L=808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-07 29.2 0.9 1.6e-06 27.8 0.9 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.00034 20.3 5.8 0.00078 19.1 5.8 1.6 1 DUF4391 Domain of unknown function (DUF4391) ------ inclusion threshold ------ 0.071 13.2 0.0 0.12 12.5 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.9 3e-10 1.6e-06 30 118 .. 480 576 .. 473 577 .. 0.81 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 3e-10 Exo_endo_phos_2 30 kskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ssiiDltltsdnlaks..leleeedlgSD 114 + +++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + s iD ++ s+ l+ + ++ ++++SD T264771_3 480 D-SHTIIMGDFNTPLSTLDRSTKQKvNKDTQELNSALHQADLIDIyrtLHPKSTeYTFFSAPHhtCSKIDHIVGSKALLGKckRSDIITNCLSD 572 3.38**************99777779***************9966666444444477766666568***************99888889***** PP Exo_endo_phos_2 115 Hrpi 118 H +i T264771_3 573 HGAI 576 *887 PP >> DUF4391 Domain of unknown function (DUF4391) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 5.8 1.4e-07 0.00078 96 241 .. 569 696 .. 538 696 .. 0.73 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.4e-07 DUF4391 96 vlsyddevllslahkRlnqadkgkivleeefitewl..pedeeslelekasdieaafldalalknlpktdlkalYqelidklialeaarltgvfslndke 193 +ls++ ++l l k+l q++++ ++l++ + + e++++++ f++ ++ ++ + Yq+l d++ a+ g f + +++ T264771_3 569 CLSDHGAIKLELRIKKLTQNRSTTWKLNNLLLNDYWvhNEMKAEIK---------MFFE-------TNENKNTTYQNLWDTFKAVCR----GKFIALNAH 648 56677789999*******************9988772333333333.........4666.......555555555555555555555....555554447 PP DUF4391 194 diaerrerlreieelekeiaklkkklkkekqfnrkvelnlelkkleke 241 + ++ r + +++++ ke++k ++ ++k+ ++ ++++elk++e++ T264771_3 649 NRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQ 696 7788888888888888888888888999999999999*******9986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 2.2e-05 0.12 71 113 .] 476 573 .. 239 573 .. 0.83 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.2e-05 CSEEEEEEEEEEE-SS......................................................-BEEEEEEHHHHTTEEEEEEECCH.. CS xxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxxxx.. RF Exo_endo_phos 71 rfpltslvivlGDfNa......................................................rlDrilaskelatersgvldepla.. 110 ++ l+s i++GDfN+ +D+i+ sk+l + + T264771_3 476 QRDLDSHTIIMGDFNTplstldrstkqkvnkdtqelnsalhqadlidiyrtlhpksteytffsaphhtcsKIDHIVGSKALLGKCKR------Sdi 565 45566779********99999999999999999988888888888888888888888888888888888888999999733222222......122 PP .....SSB CS .....xxx RF Exo_endo_phos 111 .....SDH 113 SDH T264771_3 566 itnclSDH 573 33456777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1629 (0.0999019); expected 326.1 (0.02) Passed bias filter: 437 (0.0268); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 3669.13 // Query: T018792_1 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 7557.72 // Query: T018792_2 [L=1769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 8162.59 // Query: T018792_3 [L=1769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.61 # Mc/sec: 8296.41 // Query: T132396_1 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-11 44.1 0.2 2.3e-11 43.5 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.5 0.2 1.4e-15 2.3e-11 1 60 [. 335 400 .. 335 406 .] 0.89 Alignments for each domain: == domain 1 score: 43.5 bits; conditional E-value: 1.4e-15 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH............. CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav.eellk 60 ipK+g +++ Rpisl+++d k+lnk++ +r++++++kl++++q+gf pg + + ++ ++++ T132396_1 335 IPKPGrdttkKENLRPISLMNIDAKILNKILENRIQQHIKKLIHHDQVGFIPGMQGWFNIrKSINV 400 899999999999*****************************************9999999644433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 588 (0.0360603); expected 326.1 (0.02) Passed bias filter: 325 (0.0199313); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 2074.10 // Query: T132396_2 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 1843.65 // Query: T132396_3 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.63 # Mc/sec: 1839.11 // Query: T111052_1 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0042 17.2 17.6 0.01 16.0 17.6 1.6 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 0.11 10.6 5.5 0.16 10.1 5.5 1.1 1 CDC45 CDC45-like protein 0.21 11.6 10.7 0.44 10.5 0.7 2.1 2 RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 3.9 7.0 4.8 1.7 8.2 0.9 1.9 2 Connexin Connexin Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 17.6 2.5e-06 0.01 22 91 .. 318 479 .. 310 491 .. 0.65 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 2.5e-06 DUF1777 22 drrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr.................................................. 71 +r+r+r+r+r+r+r++rer+++r++++ er+r+r++++r+++++ ++ T111052_1 318 GQRERERERERERERERRERREEREERETG-ERERERREEKREKREHTQEcflc*vwwlipvipalweaeaggllesrsqdqpgehnetlslqkinkltk 416 223444444443344444443333333332.555555555544444444489999999999999999999999999988888888888889999999999 PP DUF1777 72 ............................................kesekrsesksskeskersr 91 + +++ s++k+++++ke++r T111052_1 417 laghgdtcl*sqllgrlr*enhlspggqgcselrlghctlawamE-EDRVSKKKKKRKEKEKKR 479 999999999999999999999999999999999999988887752.222222222222222222 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 5.5 3.9e-05 0.16 150 212 .. 322 482 .. 309 500 .. 0.62 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.9e-05 CDC45 150 eeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse........................................................ 193 + ++e+e e+e+e++++r++++++e e+++e+r++kr+++e T111052_1 322 R---ERERERERERERRERREEREERETGERERERREEKREKREhtqecflc*vwwlipvipalweaeaggllesrsqdqpgehnetlslqkinkltkla 418 1...111111111111122222222222224444444445444466799999999999999999999999999999999999999999999999999999 PP CDC45 194 ..............................................psakklrrrlkkerrkyea 212 s+kk++r++k+++rk + T111052_1 419 ghgdtcl*sqllgrlr*enhlspggqgcselrlghctlawameedrVSKKKKKRKEKEKKRKT-E 482 999999999999999999999999999999999999998877665422222222233222222.2 PP >> RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.7 0.00011 0.44 138 179 .. 320 361 .. 302 402 .. 0.54 2 ? 5.3 3.6 0.0041 17 165 183 .. 463 481 .. 454 498 .. 0.51 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00011 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS RNA_polI_A34 138 ekekkkkpkakkkekkkkkkkaaeeeeeapkkkkkkkkkkke 179 ++++++ + + + e+ +++++++e e+ + ++++ ++k +k+ T111052_1 320 RERERERERERERERRERREEREERETGERERERREEKREKR 361 222222222222222222222222222222222222222222 PP == domain 2 score: 5.3 bits; conditional E-value: 0.0041 XXXXXXXXXXXXXXXXXX. CS RNA_polI_A34 165 eapkkkkkkkkkkkekkee 183 ++ +kkkkk+k+k++k+++ T111052_1 463 DRVSKKKKKRKEKEKKRKT 481 3333333333333333322 PP >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.9 0.00042 1.7 85 146 .. 305 366 .. 304 375 .. 0.62 2 ? -0.2 0.2 0.16 6.5e+02 104 119 .. 464 479 .. 446 498 .. 0.52 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00042 Connexin 85 tPsllylvyvlhkeakeekrkekekkkekkekkeeekkkkkekkkkekeeskkrrlrgkllr 146 +P ll + h+ ++e++r++++++++++++++ee++++++ +++++++++kr++r++ T111052_1 305 LPGLLSSSCDPHRGQRERERERERERERERRERREEREERETGERERERREEKREKREHTQE 366 56666777777887777777777777666666666666555555555555555555555544 PP == domain 2 score: -0.2 bits; conditional E-value: 0.16 Connexin 104 rkekekkkekkekkee 119 r +k+kkk+k+++k++ T111052_1 464 RVSKKKKKRKEKEKKR 479 2222222222222221 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1345 (0.082485); expected 326.1 (0.02) Passed bias filter: 616 (0.0377775); expected 326.1 (0.02) Passed Vit filter: 151 (0.00926039); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.59 # Mc/sec: 2603.84 // Query: T111052_2 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-06 26.4 5.6 1.2e-05 25.5 5.6 1.3 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 0.15 10.2 5.5 0.21 9.7 5.5 1.1 1 CDC45 CDC45-like protein 4.1 7.4 12.6 0.16 11.9 4.3 2.2 2 Eapp_C E2F-associated phosphoprotein Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 5.6 2.2e-09 1.2e-05 25 91 .. 318 477 .. 295 484 .. 0.67 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 2.2e-09 DUF1777 25 drdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr..................................................... 71 dr+r+r+r+r+r+ r re++++++++r++++r+r+r+++rr++r+++ T111052_2 318 DRERERERERERE-RGREEKEEKREKRERQEREREREEKRRERRENTlknafcakcggsyl*slhfgklrqedclnpgvktslgsimrpclykk*in*qn 416 3333333322222.22222222222233444444444444444444455779999999999999999999999999999999999999999999999999 PP DUF1777 72 .................................................kesekrsesksskeskersr 91 + k++k++k+r+r T111052_2 417 *lgmvthacspsylgg*gerit*arevkaavs*dwatvl*pgqwrkivsQ--------KKKKKEKKRKR 477 99999999999999999999999999999999999999999766554421........11111111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 5.5 3.9e-05 0.21 151 194 .. 322 464 .. 314 486 .. 0.50 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 3.9e-05 CDC45 151 eeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse......................................................... 193 e+e+e+e+e+ ee+++kr+ k++++ e+e+er++krr+++ T111052_2 322 ERERERERERGREEKEEKRE-KRERQ---EREREREEKRRERRentlknafcakcggsyl*slhfgklrqedclnpgvktslgsimrpclykk*in*qn* 417 11111111111111111111.11111...11222222222221234666777777777777777777777777777777777777777777777777777 PP CDC45 194 ..............................................p 194 T111052_2 418 lgmvthacspsylgg*gerit*arevkaavs*dwatvl*pgqwrkiV 464 77777777777777777777777777777777777777777666553 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 4.3 2.9e-05 0.16 76 129 .. 320 373 .. 295 375 .. 0.57 2 ? -0.3 1.2 0.17 9.5e+02 76 96 .. 466 480 .. 459 486 .. 0.38 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 2.9e-05 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeeeeelyhpvkCseCs 129 ++e e e+++++ +++k+++++++e++++e+e+ee+++e++e+++++ C++C T111052_2 320 ERERERERERERGREEKEEKREKRERQEREREREEKRRERRENTLKNAFCAKCG 373 22233333444444444444444444445555555666777999*********5 PP == domain 2 score: -0.3 bits; conditional E-value: 0.17 Eapp_C 76 ykeaesekkkkkkkkkkkkee 96 +k kkkk+kk+k+ke+ T111052_2 466 QK------KKKKEKKRKRKEK 480 22......2222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1763 (0.10812); expected 326.1 (0.02) Passed bias filter: 762 (0.0467313); expected 326.1 (0.02) Passed Vit filter: 191 (0.0117135); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 2648.73 // Query: T111052_3 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00061 20.0 12.1 0.0012 19.0 12.1 1.5 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 0.047 13.3 0.2 0.068 12.8 0.2 1.3 1 AAA_11 AAA domain 0.62 8.2 5.5 0.76 7.9 5.5 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 12.1 2.2e-07 0.0012 26 72 .. 320 466 .. 314 485 .. 0.57 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 2.2e-07 DUF1777 26 rdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr...................................................... 71 r+r+r+r+r+r+ ++r+++r+r++r+ +r+r+r+++r++r++r ++ T111052_3 320 REREREREREREGEKRKKRRERRERD-RREREREKRREEREERTHSrmlsvlsvvahtcnpctlgs*grria*iqesrpawga**dlvstknk*inkisw 418 33333333333333443344443333.3444444444333333333345677778888888888888888877777777777777777777777777777 PP DUF1777 72 ...............................................k 72 k T111052_3 419 aw*hmpvvpatweaevreslepgrsrlq*aeigplysslgnggrsclK 466 777777777777777777777777777777777777766665555442 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.2 1.3e-05 0.068 149 205 .. 322 378 .. 201 383 .. 0.81 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.3e-05 AAA_11 149 ekekllkskekskskleqerrklkkerkelskeleqaeesleeevldeaeivlcTls 205 +++++++++e +k+k+++err+ + +e +k+ e++ee+ + +l+ ++v+ T++ T111052_3 322 REREREREREGEKRKKRRERRERDRREREREKRREEREERTHSRMLSVLSVVAHTCN 378 225556667777777777777777777788888888888899*************97 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 5.5 0.00014 0.76 156 208 .. 322 361 .. 315 485 .. 0.65 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00014 CDC45 156 eeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerr 208 +e+e++ e++++krk++++++e+ d++er+r++rr+e +e+r T111052_3 322 REREREREREGEKRKKRRERRER--DRREREREKRREE-----------REER 361 11111111111222211111111..1111111111111...........1111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1267 (0.0777015); expected 326.1 (0.02) Passed bias filter: 626 (0.0383908); expected 326.1 (0.02) Passed Vit filter: 136 (0.00834049); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 2104.47 // Query: T198203_1 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.70 # Mc/sec: 12322.00 // Query: T198203_2 [L=3014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.30s 00:00:01.51 Elapsed: 00:00:00.69 # Mc/sec: 12496.44 // Query: T198203_3 [L=3014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.1 0.1 0.26 10.9 0.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.1 1.6e-05 0.26 1 17 [. 2223 2239 .. 2223 2239 .. 0.92 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 1.6e-05 DUF1725 1 kFagKWMELEnIILSEi 17 +F g+ M LE+IILS++ T198203_3 2223 SFSGTLMNLETIILSKV 2239 6999***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.65 # Mc/sec: 13265.45 // Query: T161229_1 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-103 345.1 8.5 7.5e-103 344.1 8.5 1.5 1 Transposase_22 L1 transposable element 1e-18 67.6 0.8 1e-08 34.9 0.0 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 344.1 8.5 9.2e-107 7.5e-103 139 367 .. 52 282 .. 43 283 .. 0.97 Alignments for each domain: == domain 1 score: 344.1 bits; conditional E-value: 9.2e-107 .XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 139 aslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 +s+ssr d++eervs +ed+ +e++ e k+rekr+k +eqslq+i+++vkrPnl liGv es+ e+++klen+l++ii++n+Pnl+++an++iq T161229_1 52 TSFSSRFDQVEERVSVIEDQTNEMK*EE-KFREKRVKGNEQSLQEIWEYVKRPNLCLIGVSESDGENGTKLENTLQDIIQQNLPNLARQANIQIQ 145 699*********************7776.9***************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGe 327 ei+r P+r++s+ra++rhii r+tkv++k+k+l+a+rekG+vt kGkP r+tadl aetl+a+rew+++++i ek+fqPr++y akls+i++Ge T161229_1 146 EIQRMPQRYSSRRATPRHIIARFTKVEMKEKMLRAAREKGQVTHKGKPFRITADLLAETLQAKREWGPIFNIPEEKNFQPRISYTAKLSFISEGE 240 *********************************************************************************************** PP EEEESSHHHHHHHHTT-HHH.HHHHTT..T-SSXSSXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPal.krllke..knerkdryqaleqa 367 ik f dk++lrd+++tr al + llke ++er++ryq+l++ T161229_1 241 IKSFTDKQMLRDFVTTRHAL*E-LLKEalNMERNNRYQPLQKD 282 *******************888.667779***********986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.3 2.4e-11 2e-07 1 65 [. 823 896 .. 823 902 .. 0.86 2 ! 34.9 0.0 1.2e-12 1e-08 158 222 .] 998 1079 .. 980 1079 .. 0.85 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 2.4e-11 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkk 65 ipK+g ++++Rpi l++++ +lnk++a+ ++++++kl++++q+gf pg + + ++ ++++++++ k T161229_1 823 IPKPGrnttkKENFRPIFLMNTNANILNKILANLIQQYIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRTK 896 899999999999***********************************************997755555553333 PP == domain 2 score: 34.9 bits; conditional E-value: 1.2e-12 ....TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 akgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+kin +K++++l+ s+ s++++yLG++l T161229_1 998 KEEVKLSLFADDMMVYLENpIVSAQNLLKLKSNFSKVSGCKINVQKSQAFLYtnnrqtegqimSElpltiASKRIRYLGIQL 1079 379****************6666***************************99999888776661166778*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 495 (0.0303569); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.59 # Mc/sec: 7811.52 // Query: T161229_2 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-17 63.4 0.0 3.2e-17 62.7 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.7 0.0 2e-21 3.2e-17 65 158 .. 896 989 .. 893 1003 .. 0.94 Alignments for each domain: == domain 1 score: 62.7 bits; conditional E-value: 2e-21 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 k+k+++++++D +k Fd+++ ++ l++l++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG+ lSPllfn++++ l r +r++ T161229_2 896 KTKKHMIISIDGEKVFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGIRQGCSLSPLLFNIALEFLARAIRQEK 989 67899****************************************************99********************************963 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8085.61 // Query: T161229_3 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-06 26.4 0.8 8.5e-06 25.5 0.8 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.059 13.5 0.0 0.11 12.6 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.8 1e-09 8.5e-06 3 106 .. 418 526 .. 416 536 .. 0.84 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 1e-09 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ss 89 ++Y p++ +l+ ++++l++l + l+s ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf se + s T161229_3 418 TLNIYAPNTG-TLRFIKQALRDLQRHLDS-HTIIMGDFNTPLSTIDRSTRQKvNKDIQELNSALHQADLIDIhrtLHPKSTeCTFFSEPH*tYS 509 6799**9999.9999*******9999997.8**************99887779***************9966555445555599999998999* PP Exo_endo_phos_2 90 iiDltltsdnlakslel 106 iD ++ s+ l+ +++ T161229_3 510 KIDHIVGSKALLSKCKR 526 ********999998433 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 1.3e-05 0.11 60 97 .. 375 520 .. 320 535 .. 0.80 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 1.3e-05 STTSSEEEEEECSEEEEE......................................................EEEEEE-SS............... CS xxxxxxxxxxxxxxxxxx......................................................xxxxxxxxx............... RF Exo_endo_phos 60 gkgqggvavlsrfpltsl......................................................vivlGDfNa............... 86 +k++ gva+l++ + + + i++GDfN+ T161229_3 375 TKKKAGVAILVSDKTDFKttkikrdkeghyimvkgsilqeelttlniyapntgtlrfikqalrdlqrhldshTIIMGDFNTplstidrstrqkvnk 470 456677777777777444456677777777777777777788888888999999999999999999999999*********999888888888888 PP .......................................-BEEEEEEHHH CS .......................................xxxxxxxxxxx RF Exo_endo_phos 87 .......................................rlDrilaskel 97 +D+i+ sk+l T161229_3 471 diqelnsalhqadlidihrtlhpkstectffseph*tysKIDHIVGSKAL 520 88888888888888888888888888888888888888888999888744 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 6313.42 // Query: T184496_1 [L=1136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 5803.40 // Query: T184496_2 [L=1136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.55 # Mc/sec: 5908.91 // Query: T184496_3 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 5323.02 // Query: T038093_1 [L=1934] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-130 435.7 18.9 1e-130 435.7 18.9 1.8 2 Transposase_22 L1 transposable element 1.1e-07 32.0 0.0 2.3e-07 30.9 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.00047 20.2 3.3 0.0023 18.0 3.3 2.2 1 KLRAQ Predicted coiled-coil domain-containing prote ------ inclusion threshold ------ 0.14 11.7 0.3 0.39 10.3 0.3 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 435.7 18.9 2.5e-134 1e-130 1 367 [. 751 1085 .. 751 1086 .. 0.95 2 ? -4.9 3.3 2.1 8.5e+03 56 118 .. 1393 1462 .. 1372 1473 .. 0.57 Alignments for each domain: == domain 1 score: 435.7 bits; conditional E-value: 2.5e-134 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykel.kelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk + +s+P+ke+sssPat e+++ +df+elr+e++++ ++ ++l +i++++ke++ +k+++e n+ek T038093_1 751 MGKKQ---SRKTGNSKKQRASPPPKERSSSPAT--EQSWTGNDFDELREEGFRR*NY-SKL*E-EIQTNGKEVKnLEKKLDEwipritNAEKS 836 79999...9************************..*****************98885.54555.589******98899999944444444444 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkil 176 l kel+elk+k++e ++e++ sl+sr+d+leervsa++de++ + + e+k+rekr+k++ T038093_1 837 L------------------KELMELKAKAREQREECR------------------SLRSRCDQLEERVSAMQDEMNAM-K*EGKFREKRIKRN 892 4..................59****************..................*********************99.5669********** PP HHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHH CS Transposase_22 177 eqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavr 269 eqslq+ +d+vkrPnlrli v+es+ e+++klen+l++i++enfPnl+++an++iqei+r P+ + s+ra++rhiivr+tkv++k+k l+a+r T038093_1 893 EQSLQETWDYVKRPNLRLICVPESDRENGTKLENTLQDIVQENFPNLARQANIQIQEIQRMPQIYYSRRATPRHIIVRFTKVEMKEKKLRAAR 985 ********************************************************************************************* PP HHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSS CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdr 360 ekGrvt kGkPirl adlsaetl+arrew+++++ilke++fqP ++yPakls+i++Geik+f k++lr++++trPalk+llke ++er++ T038093_1 986 EKGRVTHKGKPIRLPADLSAETLQARREWGPIFNILKENNFQPSISYPAKLSFISEGEIKYFTYKQMLRHFVTTRPALKELLKEalNMERNNW 1078 ********************************************************************************************* PP XXXXXXX CS Transposase_22 361 yqaleqa 367 yq+l+++ T038093_1 1079 YQPLQKH 1085 *****98 PP == domain 2 score: -4.9 bits; conditional E-value: 2.1 XXXXXXXXXXX..XXX..XXXXXXXXXX....XXXXXXX..................XXXXXXXXXXXXXX CS Transposase_22 56 fykelkelies..kak..elealkekee....ntekqlkiikekqentskqvmemnkellelktkvdelkk 118 y++l + ++ ++k l+a k+k+e +t i ekqe+t + +e+ ++++ +e+ T038093_1 1393 TYQNLWDTFKAvcRGKfiALNAHKKKQErpkiDTLTPQLIGLEKQEQTHSKAS-RRQEITKIRAELKEIET 1462 45555444433113331156688888888877554444456788888866543.45567777777666644 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.0 5.6e-11 2.3e-07 1 113 [] 1121 1340 .. 1121 1340 .. 0.86 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 5.6e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d v ++qE++ ++ +l+ + ++ + ++++ gva l++ + + T038093_1 1121 LTLNVNG----LNAPVKRHRLANWIKSQDSSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAFLISDEPDFQptkikrdkeghyiml 1210 699****....77788899******************999888777766688556677788888899999999999555577899999999999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++G fN+ T038093_1 1211 kgsiqqeeltilkiyasntgaprfikqvlsdlqrdldshTIIMGEFNTplstldrstgqkvnkhtqelnsalhqadlidiyrtlhpksteytff 1304 999999999999999999999999999999999999999*********9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l +r + + + SDH T038093_1 1305 saphhtysKIDHIVGSKALLSKRKRTEIITNClSDH 1340 9999988888******97777777666665557999 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 3.3 5.7e-07 0.0023 28 81 .. 834 893 .. 825 905 .. 0.73 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 5.7e-07 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsksk 81 e++lke + k ++ r +++E sL r +qLe rv+++q+e++ + K++ +++ T038093_1 834 EKSLKELMELK-AKAREQREECRSLRSRCDQLEERVSAMQDEMNAMK*egkfreKRIKRNE 893 45666655555.5679999*************************99888533322222222 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.3 9.5e-05 0.39 2 17 .. 193 208 .. 193 208 .. 0.92 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 9.5e-05 DUF1725 2 FagKWMELEnIILSEi 17 Fag+WME E LSE+ T038093_1 193 FAGTWMEPEAMFLSEV 208 9******999999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1934 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1098 (0.0673372); expected 326.1 (0.02) Passed bias filter: 312 (0.0191341); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 9070.24 // Query: T038093_2 [L=1933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-44 150.8 3.4 5.5e-44 150.2 3.4 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.2 3.4 3.4e-48 5.5e-44 1 209 [. 1626 1853 .. 1626 1871 .. 0.94 Alignments for each domain: == domain 1 score: 150.2 bits; conditional E-value: 3.4e-48 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl+++d k+lnk++a + ++++kl++++q+gf +g + + ++ +++++++++k k++++++ D +kaFd+++ + T038093_2 1626 IPKPGrdttkKENFRPISLMNIDAKILNKILAn*iQ---QHIKKLIHHDQVGFISGMQGWFNIcksvNVIQHINRAKDKNHMIISTDAEKAFDKIQQH 1720 899999999999******************964434...688888*****************9***9999999999********************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l+++ ++ + +++ +++++++++++ +n+++ ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T038093_2 1721 FMLKTLNKLVIDGTYLKITRAIYKKPTANIILNEQKLDAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLE 1818 ***********************************99*********************************99************************** PP SHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE... CS RVT_1 176 skee.lqelleaveewlkesglkinpeKtklvlfs 209 +++ +q+ll+ ++++ k sg+kin +K++++l++ T038093_2 1819 NPTVsAQNLLKLISNFSKVSGYKINVQKSQAFLYT 1853 *8877***************************873 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 9065.55 // Query: T038093_3 [L=1933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 8777.75 // Query: T117122_1 [L=2717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.72 # Mc/sec: 10795.66 // Query: T117122_2 [L=2717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5 6.6 5.7 9.4 5.7 1.0 2.6 2 Humanin Humanin family Domain annotation for each model (and alignments): >> Humanin Humanin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 1.0 0.00058 9.4 4 12 .. 1088 1096 .. 1087 1097 .. 0.90 2 ? 2.4 0.2 0.0063 1e+02 6 12 .. 1235 1241 .. 1233 1244 .. 0.87 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00058 Humanin 4 rGFSCLLLl 12 +GFSCL+L+ T117122_2 1088 KGFSCLSLP 1096 6******96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.0063 Humanin 6 FSCLLLl 12 FSCL+L+ T117122_2 1235 FSCLSLP 1241 ******8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.70 # Mc/sec: 11104.11 // Query: T117122_3 [L=2717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.79 # Mc/sec: 9839.08 // Query: T031180_1 [L=3692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 14468.75 // Query: T031180_2 [L=3692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.32s 00:00:01.66 Elapsed: 00:00:00.74 # Mc/sec: 14273.22 // Query: T031180_3 [L=3691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.70 # Mc/sec: 15084.75 // Query: T016860_1 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 2788.01 // Query: T016860_2 [L=536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 2395.95 // Query: T016860_3 [L=535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.3 0.0 4.9e-06 26.2 0.0 1.9 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.0 3e-10 4.9e-06 22 54 .. 224 256 .. 214 262 .. 0.87 2 ? -1.6 0.0 0.14 2.3e+03 41 66 .. 333 358 .. 330 366 .. 0.81 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 3e-10 Transposase_1 22 pkpelhqkkvmltVwWsakgliyyeflppgeti 54 +k + ++ kvm+tV+W+ +g+++++fl+ +++i T016860_3 224 SKMNWSRAKVMATVFWDGQGILLVDFLEGQRMI 256 6778899*********************99988 PP == domain 2 score: -1.6 bits; conditional E-value: 0.14 Transposase_1 41 gliyyeflppgetitsevYaqqldkl 66 gl + ++p + its Y + l+k T016860_3 333 GLELLGSSDPPALITSASYESALRKS 358 6666666788899********99985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 2354.68 // Query: T377270_1 [L=1676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-07 29.3 0.0 1.3e-06 28.5 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 0.0 8.2e-11 1.3e-06 5 56 .. 420 472 .. 417 481 .. 0.84 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 8.2e-11 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 v+Y+DGs++ n +ge++ag+ v+ + + +++l++ ++++++EL+A+i aL+ T377270_1 420 VLYVDGSSFINpQGERCAGYaVVTLD-TVVEARSLPQGTSAQKTELIALIWALE 472 89*********99999****777766.33556778899***************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.77 # Mc/sec: 6226.95 // Query: T377270_2 [L=1676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-17 61.4 0.0 1.2e-16 60.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 3.5e-08 33.4 0.7 3.5e-08 33.4 0.7 2.2 2 zf-H2C2 His(2)-Cys(2) zinc finger 0.002 16.8 1.9 0.069 11.7 0.4 2.4 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.8 0.0 2.2e-20 1.2e-16 1 179 [. 39 173 .. 39 184 .. 0.90 Alignments for each domain: == domain 1 score: 60.8 bits; conditional E-value: 2.2e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T377270_2 39 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTVPNWYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 113 69*********7....7***********.........99999999999555............55788******************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee 179 ++ +++y++ +lp G+++SP++f ++ + l+++ +r g+ ll+Y+DD+++ + + + T377270_2 114 -------------------ESGVTTQYTWIRLPKGFKNSPTIFGEALAQDLQKFPTRDLGCMLLQYVDDLFLGHPTAVR 173 ...................34569**********************************************998877655 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.7 6.5e-12 3.5e-08 1 39 [] 509 547 .. 509 547 .. 0.98 2 ? -1.5 0.1 0.55 3e+03 29 39 .] 954 964 .. 950 964 .. 0.89 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 6.5e-12 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll ++++ ++++++++V+++C++C+ T377270_2 509 HETTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCR 547 9*************************************5 PP == domain 2 score: -1.5 bits; conditional E-value: 0.55 zf-H2C2 29 seVissCkaCq 39 ++++ +C aC+ T377270_2 954 KQITLRCDACA 964 68999*****7 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.8 0.0 0.0031 17 324 369 .. 1227 1269 .. 1047 1295 .. 0.83 2 ! 11.7 0.4 1.3e-05 0.069 454 497 .. 1367 1411 .. 1341 1418 .. 0.83 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0031 XX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX CS TLV_coat 324 te.ktskgseylvapngtvfacntgltpclstallnlttdlCvlael 369 t + + ++ +ap+g +++c++ + +l+++++++Cv ++ T377270_2 1227 TAwAHPESHQDWMAPAGLYWICGHRA----YIRLPDKWAGSCVIGTI 1269 3324444455789*********9765....69**********97655 PP == domain 2 score: 11.7 bits; conditional E-value: 1.3e-05 HHHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HHHHHHHH CS TLV_coat 454 laevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksgivrdsi 497 + + + QNR LD L + eGG+C + +CC +d g v ++i T377270_2 1367 MRNAIYQNRLALDYLLAAEGGVCGNFNlTNCCLQIDDQGQVVENI 1411 556788******************999568*****9987665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 7376.54 // Query: T377270_3 [L=1676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-11 43.3 0.0 5e-11 42.7 0.0 1.3 1 rve Integrase core domain ------ inclusion threshold ------ 0.026 14.2 0.0 0.045 13.4 0.0 1.3 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.7 0.0 6.2e-15 5e-11 62 117 .. 589 643 .. 574 645 .. 0.93 Alignments for each domain: == domain 1 score: 42.7 bits; conditional E-value: 6.2e-15 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++g p+ + sDng+++++ ++++++ lgi++++++++rpq+ GkvE++nrt+k+ T377270_3 589 RFGL-PLWIGSDNGPAFVADLVQKMAKVLGITWKLHAAYRPQSSGKVEQMNRTIKN 643 4555.99999********************************************98 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 5.5e-06 0.045 2 30 .. 617 645 .. 616 659 .. 0.90 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.5e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdel 30 gi++++ a ++Pq g+vE +n+t+++ l T377270_3 617 GITWKLHAAYRPQSSGKVEQMNRTIKNSL 645 9*************************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.74 # Mc/sec: 6479.39 // Query: T194283_1 [L=4774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.41s 00:00:01.93 Elapsed: 00:00:00.81 # Mc/sec: 16861.24 // Query: T194283_2 [L=4774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.41s 00:00:02.01 Elapsed: 00:00:00.87 # Mc/sec: 15698.39 // Query: T194283_3 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.44s 00:00:02.09 Elapsed: 00:00:00.85 # Mc/sec: 16064.40 // Query: T272040_1 [L=958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.70 # Mc/sec: 3915.25 // Query: T272040_2 [L=957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 5587.38 // Query: T272040_3 [L=957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5475.63 // Query: T157128_1 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5773.15 // Query: T157128_2 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5659.96 // Query: T157128_3 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5654.35 // Query: T336894_1 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 4683.91 // Query: T336894_2 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 4875.09 // Query: T336894_3 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 5076.45 // Query: T107721_1 [L=951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5232.02 // Query: T107721_2 [L=951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 5441.30 // Query: T107721_3 [L=951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 5232.02 // Query: T251553_1 [L=4330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 21732.27 // Query: T251553_2 [L=4330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.57 # Mc/sec: 21357.58 // Query: T251553_3 [L=4330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.56 # Mc/sec: 21732.27 // Query: T267830_1 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 96 (0.0058874); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3503.06 // Query: T267830_2 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45 # Mc/sec: 3814.44 // Query: T267830_3 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-73 245.7 20.2 1e-72 244.9 20.2 1.4 1 Transposase_22 L1 transposable element 0.00022 21.3 7.9 0.0006 19.9 7.9 1.8 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.00028 21.3 7.9 0.0012 19.2 7.9 2.1 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.00043 18.5 10.6 0.0023 16.1 8.0 1.9 2 EzrA Septation ring formation regulator, EzrA 0.0017 17.3 0.3 0.0023 16.9 0.3 1.1 1 ArAE_2_N Putative ER transporter, 6TM, N-terminal ------ inclusion threshold ------ 0.013 14.8 12.7 0.03 13.6 12.7 1.6 1 GAS Growth-arrest specific micro-tubule binding 0.013 15.5 19.3 0.37 10.8 19.3 2.1 1 ATG16 Autophagy protein 16 (ATG16) 0.038 13.2 12.7 0.061 12.6 12.7 1.3 1 APG6 Autophagy protein Apg6 0.057 12.7 0.1 0.083 12.1 0.1 1.1 1 Reo_sigmaC Reovirus sigma C capsid protein 0.15 10.8 17.7 0.21 10.3 17.7 1.1 1 DUF812 Protein of unknown function (DUF812) 0.15 12.0 1.7 0.53 10.3 1.7 2.0 1 Vps51 Vps51/Vps67 0.15 11.9 6.0 1.7 8.6 1.1 2.5 2 DUF1515 Protein of unknown function (DUF1515) 0.15 11.7 5.9 0.36 10.5 5.6 1.7 1 Phage_GP20 Phage minor structural protein GP20 0.16 11.6 15.0 0.37 10.4 8.1 2.4 2 TBPIP Tat binding protein 1(TBP-1)-interacting prot 0.23 11.1 11.8 0.47 10.1 11.8 1.5 1 IncA IncA protein 0.24 11.4 12.0 0.031 14.3 5.2 2.5 2 GCN5L1 GCN5-like protein 1 (GCN5L1) 0.25 11.6 5.0 0.6 10.3 5.0 1.7 1 BLOC1_2 Biogenesis of lysosome-related organelles com 0.3 11.7 9.6 0.1 13.2 2.2 2.5 2 DUF2203 Uncharacterized conserved protein (DUF2203) 0.34 10.9 3.5 0.41 10.6 1.3 2.2 2 DUF2730 Protein of unknown function (DUF2730) 0.4 10.6 3.3 0.91 9.4 2.3 1.9 2 DUF1664 Protein of unknown function (DUF1664) 0.41 11.2 3.8 0.32 11.5 0.3 2.3 2 Cytochrom_B562 Cytochrome b562 0.43 11.0 10.0 0.17 12.3 5.3 2.0 2 Spectrin Spectrin repeat 0.62 9.9 2.4 0.82 9.5 0.9 1.9 2 DUF4250 Domain of unknown function (DUF4250) 1.3 7.4 6.3 2 6.8 6.3 1.4 1 DUF342 Protein of unknown function (DUF342) 1.4 9.3 15.6 0.92 9.9 6.9 2.5 2 ZapB Cell division protein ZapB 1.7 9.3 7.2 15 6.2 0.4 2.6 2 Occludin_ELL Occludin homology domain 2.4 8.1 17.5 0.17 11.9 8.9 2.9 3 ADIP Afadin- and alpha -actinin-Binding 2.6 6.9 15.5 0.38 9.6 11.4 1.5 1 Atg14 Vacuolar sorting 38 and autophagy-related sub 2.9 5.6 7.9 8.2 4.1 7.9 1.3 1 Prominin Prominin 3.3 8.1 10.0 14 6.0 1.0 2.7 2 FlaC_arch Flagella accessory protein C (FlaC) 3.5 7.4 5.6 15 5.4 0.9 2.7 2 WD40_alt Alternative WD40 repeat motif 4.9 7.0 7.4 7.1 6.5 0.1 3.0 3 HSBP1 Heat shock factor binding protein 1 5.4 7.0 16.9 31 4.5 8.2 3.3 2 TMF_DNA_bd TATA element modulatory factor 1 DNA binding 6.3 7.0 17.8 0.033 14.3 6.4 2.6 2 KLRAQ Predicted coiled-coil domain-containing prote 7.2 6.0 6.2 2.3 7.6 2.0 2.0 2 Fzo_mitofusin fzo-like conserved region 7.9 4.8 21.5 7.4 4.9 20.2 1.4 1 Macoilin Transmembrane protein 9.3 6.1 14.8 11 5.9 5.7 2.7 2 Prefoldin_2 Prefoldin subunit Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 244.9 20.2 2.3e-75 1e-72 1 243 [. 391 599 .. 391 600 .] 0.95 Alignments for each domain: == domain 1 score: 244.9 bits; conditional E-value: 2.3e-75 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX........ CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekeentekqlkiikekqen 94 +Gkk+ rk+ nsk +++s+P+ke+sss a e++++++d +elr+e++++++y+elke++++++ke++ ++k+++e + + T267830_3 391 MGKKQ---SRKTRNSKNQSASPPPKERSSSSAM--EQSWMENDIDELREEGFRRSNYSELKEEVRTNGKEVKnFEKKLDEWITRITN-------- 472 79999...9**********************99..************************************99*******6666555........ PP ..........XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS Transposase_22 95 tskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr 189 + k k+l+elkt ++el++e+ sls+r+d+leervsa+e+e++e++re k+rekr+k++eqslq+i+d+vk T267830_3 473 AEK----SLKDLMELKTTARELRDECT------------------SLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWDYVKT 545 222....2369****************..................************************************************** PP TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-T CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqds 243 PnlrliGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s T267830_3 546 PNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIKRMPQRYSS 599 ****************************************************97 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 7.9 1.4e-06 0.0006 6 100 .. 424 518 .. 420 521 .. 0.96 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 1.4e-06 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e +R +++++ +e+ ++ ++ +++l+e ++ ++ k+ + +++ k a el++e +l+++ ++le++++++e+e++++ T267830_3 424 WMENDIDELREEGFRRSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEM 518 7889****************************************************************************************986 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 7.9 2.7e-06 0.0012 3 92 .. 442 540 .. 440 545 .. 0.77 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 2.7e-06 Syntaxin-6_N 3 FfevkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknp....skfkidekelsrrrafvee 90 + e keeV+ k++++ e+ +++w +++ + ++s + el+ t +eLr ++ s+++ ++Lee v+++e++ ++ k +ek ++r ++ ++e T267830_3 442 YSELKEEVRtngKEVKNFEKKLDEWiTRITNAEKSlKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMnemkREEKFREKRIKRNEQSLQE 538 667788887333679999999****8899999999989******************************99885511213355666666666666666 PP Syntaxin-6_N 91 vr 92 + T267830_3 539 IW 540 55 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.7 0.0017 0.75 371 408 .. 439 476 .. 414 482 .. 0.80 2 ! 16.1 8.0 5.2e-06 0.0023 347 459 .. 461 574 .. 454 593 .. 0.81 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0017 S---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS EzrA 371 kvaYSelqeeleeleekleeieekqeelleslkslrkd 408 YSel+ee+++ ++++++e+k++e +++++ +k+ T267830_3 439 RSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKS 476 457*************************9999998875 PP == domain 2 score: 16.1 bits; conditional E-value: 5.2e-06 HHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS..-S-TTTHHH CS EzrA 347 relekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeelleslkslrkdEkrAreqldeikkelkeikrkieksnL..PgiPesyle 444 ++l++++ ++ + ++l++ +e k++a el++e+ +l+++++++ee++ ++e++++++++Ek ++++++ ++ l+ei ++++ nL g+Pes e T267830_3 461 KKLDEWITRITNAEKSLKDLMELKTTA-RELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWDYVKTPNLrlIGVPESDGE 559 456677777777777777777766666.69******************************************************9876511688888888 PP HSTTTSTTTHHHHHH CS EzrA 445 elkeasdeieelake 459 + ++ ++ ++++++e T267830_3 560 NGTKLENTLQDIIQE 574 888877777777765 PP >> ArAE_2_N Putative ER transporter, 6TM, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.3 5.3e-06 0.0023 257 352 .. 430 534 .. 405 591 .. 0.79 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 5.3e-06 ArAE_2_N 257 e.........lnfkklekditkirslypkleavlsflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravvl....kserssklarnsh 343 + +n+++l++++ +++++ e +l + + ++ + s++d++el++t r l ++L++ +d lee+++++ + +r++k+++ T267830_3 430 DelreegfrrSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEeemnEMKREEKFRE--- 526 25555667779*******************************************************************9977777776666667766... PP ArAE_2_N 344 aklfseiek 352 k+ ++ e+ T267830_3 527 -KRIKRNEQ 534 .22223222 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 12.7 6.8e-05 0.03 46 129 .. 439 522 .. 423 539 .. 0.87 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 6.8e-05 GAS 46 ekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelykkf 129 + + se+++e + +++k+ ek+++e +++n ek ++l++lk+ +el +e ++l+ ++l++r++++e+e +e++++ T267830_3 439 RSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREE 522 56789999999999999999999999999**************************************************98754 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 19.3 0.00084 0.37 52 186 .. 390 517 .. 364 547 .. 0.69 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00084 ATG16 52 k.sskaskksakeelasssqsnskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaleeklkdreeelr 150 k +k+s+k+++++++s ++ +++++s++ + + + ++ el ++ g + el+ee+++ ++ k+ e++l+e +++++ e+ lkd l T267830_3 390 KmGKKQSRKTRNSKNQS---ASPPPKERSSSSAMEQSWMENDIDEL-REEGFRRSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKD----LM 481 22222222222222222...34455666666666666777777776.78888888888888888888888888888888888888888888887....45 PP ATG16 151 ekeklvqdlqDElqaLqlqlnqaEeklrklekENke 186 e++++ +l+DE ++L + q+Ee+ +e+E +e T267830_3 482 ELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNE 517 677888888888888888888888888888888554 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 12.7 0.00014 0.061 13 111 .. 444 536 .. 386 548 .. 0.72 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00014 APG6 13 eldkeleelekerdayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalklel 111 el++e+++ ke +++e+ l++ ++ + + e++ k+l +l+ +el++e l + +++lee ++++eee++e+++ee+ ++ + ++ l T267830_3 444 ELKEEVRTNGKEVKNFEKKLDEWITR---IT---NAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSL 536 34444444444444444444444333...32...55677777888888888888888888888888888888888888888888765555444444444 PP >> Reo_sigmaC Reovirus sigma C capsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 0.00019 0.083 44 122 .. 442 523 .. 427 537 .. 0.85 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00019 Reo_sigmaC 44 taslsesvssissklsdlsadlqdvtsslddvkaelk...elstevaalqssvdslsseladlselvsahdaalsslqtevd 122 l+e v + +++ + + +l++ ++ + +++ +lk el+t+ ++l++ sls +l e vsa ++ + ++++e + T267830_3 442 YSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKdlmELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEK 523 567999999999*************9999999876652226789*****************************999998765 PP >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 17.7 0.00047 0.21 239 409 .. 379 569 .. 362 586 .. 0.46 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00047 DUF812 239 teeeykkrkkeklqkrlaeqlrkaalsseeaeksaskskkdlaellsef.............sekntseselskgsrfthaeklqfake........... 314 ++ k +k +k+ k+ +++ r++ +++++ + k++++ + + +++ + +n sel+++ r++ +e +f+k+ T267830_3 379 HHQRPKVDKTTKMGKKQSRKTRNSK---NQSASPPPKERSSSSAMEQSWmendidelreegfRRSN--YSELKEEVRTNGKEVKNFEKKldewitritna 473 3333344444444444444444443...33333333344444444444422233333333221111..12233333333333334444444443333222 PP DUF812 315 elakkkteteeelrkkreeeleelqekleeleskieeleeelkklessikqieeeleeekeeneelekelklkk.ktlellpdaeeniekLqalve 409 e++ k+ + + + + +e ++l++++++le++++++eee+++++ + k e+ +++++++ +e+ + +k+ + +++ +++ en kL++ ++ T267830_3 474 EKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWDYVKTPNlRLIGVPESDGENGTKLENTLQ 569 333333333333333334566666666666666666666666666666666666666666666666666665442444444555566666666555 PP >> Vps51 Vps51/Vps67 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 1.7 0.0012 0.53 22 86 .. 454 513 .. 438 514 .. 0.88 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.0012 Vps51 22 kellkveaslrseiraldselkalVydnYskLisaadtIrkmksemdkldqklselsqaiskiae 86 ke++++e++l i++ + k+l ++L++ t r++++e+++l+++ ++l +++s ++e T267830_3 454 KEVKNFEKKLDEWITRITNAEKSL-----KDLMELKTTARELRDECTSLSNRCDQLEERVSAMEE 513 889999999999999999999988.....9******************************99987 PP >> DUF1515 Protein of unknown function (DUF1515) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 1.1 0.0038 1.7 13 73 .. 425 494 .. 417 496 .. 0.81 2 ? 5.7 0.6 0.029 13 37 61 .. 496 520 .. 488 574 .. 0.83 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0038 DUF1515 13 llaevknlred.lr.......rsedrsdasrak.myrrmdelvervtalegsvsklkeditevkevtddv 73 + +++ +lre+ +r + e+r++ +k +++de + r+t+ e s+ l e t+ +e+ d+ T267830_3 425 MENDIDELREEgFRrsnyselKEEVRTNGKEVKnFEKKLDEWITRITNAEKSLKDLMELKTTARELRDEC 494 77899999976488788777777888888888636789***************99998888888887775 PP == domain 2 score: 5.7 bits; conditional E-value: 0.029 DUF1515 37 kmyrrmdelvervtalegsvsklke 61 ++ +r d+l erv+a+e + ++k T267830_3 496 SLSNRCDQLEERVSAMEEEMNEMKR 520 5667778888888887777777664 PP >> Phage_GP20 Phage minor structural protein GP20 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 5.6 0.00082 0.36 17 82 .. 453 521 .. 441 536 .. 0.81 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00082 Phage_GP20 17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkaka...eyeakiadlkld 82 +++++ e+ d++ +++++++k+L+dL + + ++ eL + ++l + ++ ++ +e++++++k + T267830_3 453 GKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEErvsAMEEEMNEMKRE 521 578899999*************************************98888776111456677777765 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 1.3 0.056 25 75 123 .. 423 475 .. 412 479 .. 0.48 2 ? 10.4 8.1 0.00085 0.37 72 137 .. 478 541 .. 473 547 .. 0.81 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.056 TBPIP 75 nkldaeieelree......vqelkqeiselekelkkLeseltteelleeiqelkk 123 + ++++i elree +elk+e+++ ke k+ e++l +e ++ i + +k T267830_3 423 SWMENDIDELREEgfrrsnYSELKEEVRTNGKEVKNFEKKL--DEWITRITNAEK 475 44555555554432222223455555555555555555555..555555555554 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00085 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeseltteelleeiqelkkeveeieekLeslke 137 ++l++l+ elr+e+ +l++ + +le+ ++e+e+ +e++ e + ++k ++++e+ L+++ + T267830_3 478 KDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEM--NEMKREEKFREKRIKRNEQSLQEIWD 541 68888999999999999999999999999999998888..88888888888889999888887755 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 11.8 0.0011 0.47 76 186 .. 428 521 .. 377 545 .. 0.52 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.0011 IncA 76 e..............srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirelrelsdlkee 158 s+l+ee+ ++++ e++l++ +r+ e+ lkdl e ++ + e +s+ r++ lee+++++++e+ e+ T267830_3 428 DidelreegfrrsnySELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARelrDECTSLSNRCDQLEERVSAMEEEMNEMK-------- 519 03334444444444444444555555555555555555444444444444444444444443334444444444444444444444444444........ PP IncA 159 vqelrselerlqedlqrlqqkiaelqrl 186 r T267830_3 520 --------------------------RE 521 ..........................33 PP >> GCN5L1 GCN5-like protein 1 (GCN5L1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 5.2 7.1e-05 0.031 48 106 .. 441 499 .. 376 507 .. 0.86 2 ? 1.4 0.7 0.69 3e+02 50 89 .. 502 541 .. 490 544 .. 0.84 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 7.1e-05 GCN5L1 48 nqkklekeakalqaqvakfakqtdqWlalvesfnsaLkeiGDvenWaktiekDlksite 106 n +l +e+++ ++v++f+k+ d+W++ + + +++Lk++ +++ a+ + ++ s+++ T267830_3 441 NYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSN 499 67799****************************************99999999999876 PP == domain 2 score: 1.4 bits; conditional E-value: 0.69 GCN5L1 50 kklekeakalqaqvakfakqtdqWlalvesfnsaLkeiGD 89 +le+ + a+++++++++++ + + +++ +++L+ei+D T267830_3 502 DQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWD 541 5789999999999999999999999999999999999998 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 5.0 0.0014 0.6 19 91 .. 446 518 .. 437 539 .. 0.89 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.0014 BLOC1_2 19 vedyklLekmNkaasekykklkdvaaslekeleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeL 91 +e++++ k k+ ++k +++ + + ++ek+l++l e++ + +++ ++ + ++ ++Lee vs+++e + e+ T267830_3 446 KEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEM 518 67777777888999999999999*****************************************999977665 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 1.6 0.12 52 27 79 .. 427 480 .. 379 481 .. 0.67 2 ? 13.2 2.2 0.00024 0.1 6 86 .. 471 553 .. 469 564 .. 0.85 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.12 DUF2203 27 keleeleeeleeakaeaekse.aaeleaeleeleaeieelveeieelGvevkdl 79 +++ el+ee + ++ +e +e +++ +e+++ e++++e++++i++ +kdl T267830_3 427 NDIDELREEGFRRSNYSELKEeVRTNGKEVKNFEKKLDEWITRITNAEKSLKDL 480 344444443322222222222467777788888888888888888888777776 PP == domain 2 score: 13.2 bits; conditional E-value: 0.00024 DUF2203 6 eeAnalLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvevkdleaglvDF 86 +A++ L l el + +r+lr+e ++l+++ ++ +++ ++ e +e+++e+++ e++i++ + ++e+ vk + l+ T267830_3 471 TNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEeeMNEMKREEKFREKRIKRNEQSLQEIWDYVKTPNLRLIGV 553 5799999999999999999******9999999998887766667999*******************99988888877777765 PP >> DUF2730 Protein of unknown function (DUF2730) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.3 0.00093 0.41 32 93 .. 439 508 .. 432 515 .. 0.66 2 ? -1.6 0.1 6 2.6e+03 33 58 .. 513 538 .. 509 545 .. 0.80 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00093 DUF2730 32 redleklaekveendkrlteletkvenLPta........kdlekLkllladlrgelkaleaevrqlshqv 93 r++ ++l+e+v++n k +++ e k+++ t+ kdl +Lk++ ++lr e l+++ +ql+ +v T267830_3 439 RSNYSELKEEVRTNGKEVKNFEKKLDEWITRitnaekslKDLMELKTTARELRDECTSLSNRCDQLEERV 508 5666666666666666666666666665544322222237888888888888888888888888887765 PP == domain 2 score: -1.6 bits; conditional E-value: 6 DUF2730 33 edleklaekveendkrlteletkven 58 e++++++ + + +kr+++ e+++++ T267830_3 513 EEMNEMKREEKFREKRIKRNEQSLQE 538 78888888888888999988888876 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.1 0.83 3.6e+02 84 116 .. 444 476 .. 421 483 .. 0.58 2 ? 9.4 2.3 0.0021 0.91 66 122 .. 454 513 .. 439 523 .. 0.52 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.83 DUF1664 84 eikeevtevredlseikedvesvkeavegLesk 116 e+keev + ++++++++++++ + +++ e++ T267830_3 444 ELKEEVRTNGKEVKNFEKKLDEWITRITNAEKS 476 344555555555555555555444444444444 PP == domain 2 score: 9.4 bits; conditional E-value: 0.0021 DUF1664 66 qridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 +++++ +kklde + +++ + ++++e++ + +e++++ +s+++ +Le++++ +ee T267830_3 454 KEVKNFEKKLDEWITRITNAEkslKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEE 513 455555555555544333333111344555555556666666666666666666655554 PP >> Cytochrom_B562 Cytochrome b562 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.3 0.00074 0.32 40 92 .. 438 492 .. 414 496 .. 0.85 2 ? 0.2 0.3 2.5 1.1e+03 39 67 .. 510 542 .. 491 548 .. 0.52 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00074 Cytochrom_B562 40 keatpsklek....dseeqkdYqeGldklidqldkaealakagkleeakaalkelkd 92 +++++s+l++ + +e+k++++ ld+ i+ +++ae+++k +l e k+ ++el+d T267830_3 438 RRSNYSELKEevrtNGKEVKNFEKKLDEWITRITNAEKSLK--DLMELKTTARELRD 492 567888888899999*************************9..9********99976 PP == domain 2 score: 0.2 bits; conditional E-value: 2.5 Cytochrom_B562 39 akeatpsklek....dseeqkdYqeGldklidq 67 a+e+++++++ +++++k ++ l+++ d T267830_3 510 AMEEEMNEMKReekfREKRIKRNEQSLQEIWDY 542 233333344433444566666666666666555 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 5.3 0.00037 0.17 13 103 .. 421 515 .. 416 517 .. 0.90 2 ? 11.1 7.1 0.00085 0.38 3 94 .. 456 545 .. 454 548 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00037 HHHHHHHHHHHHTCSSC.SSSHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Spectrin 13 leeWieekeellssedl.gkdleevqallk....khkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqkL 103 ++W+e+ +l +e + + ++e+++ ++ + k +e+ l+++ +r+++ ++ ++l++ + ++ e+++ + l +r ++L+e++ +++++ T267830_3 421 EQSWMENDIDELREEGFrRSNYSELKEEVRtngkEVKNFEKKLDEWITRITNAEKSLKDLMEL-KTTARELRDECTSLSNRCDQLEERVSAMEEEM 515 579***9999998888879999999999999998**************************888.6999**********************999876 PP == domain 2 score: 11.1 bits; conditional E-value: 0.00085 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de i+++e+ l +dl + +++++l ++++ l + ++ +erv a +e +++ e+++ +++i+ + l+e W+ +k+ T267830_3 456 VKNFEKKLDEWITRITNAEKSL--KDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWDYVKT 545 5689999999999999999999..788788889999999**************************9999******************99875 PP >> DUF4250 Domain of unknown function (DUF4250) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 9.6 4.2e+03 17 43 .. 439 465 .. 439 466 .. 0.82 2 ? 9.5 0.9 0.0019 0.82 15 43 .. 489 517 .. 488 519 .. 0.92 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 9.6 DUF4250 17 RDeyssldelcedldidkeeleekLas 43 R +ys+l+e +++ + ++ e+kL++ T267830_3 439 RSNYSELKEEVRTNGKEVKNFEKKLDE 465 778999999888888888888999875 PP == domain 2 score: 9.5 bits; conditional E-value: 0.0019 DUF4250 15 kLRDeyssldelcedldidkeeleekLas 43 +LRDe+ sl++ c++l+ +++ee++++ T267830_3 489 ELRDECTSLSNRCDQLEERVSAMEEEMNE 517 6*******************999999987 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 6.3 0.0046 2 339 416 .. 442 516 .. 428 588 .. 0.59 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0046 DUF342 339 lkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeak 416 ++el+ee++ +e+++ +kk+++ ++++ ++ +++l +l++t +l++e ++l ++ ++l+e++ ++ee + T267830_3 442 YSELKEEVRTNGKEVKNFEKKLDEWIT-RITN--AEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMN 516 455555555555555555555333333.2222..23333333333333333333333333333333333333311111 PP >> ZapB Cell division protein ZapB # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 1.4 0.14 63 26 64 .. 428 472 .. 419 474 .. 0.81 2 ? 9.9 6.9 0.0021 0.92 6 49 .. 480 523 .. 475 540 .. 0.73 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.14 ZapB 26 eieeLkeen......eelkeenreleeeneqlkeereawqerlkk 64 i+eL+ee +elkee r +e++++++ +w r+ + T267830_3 428 DIDELREEGfrrsnySELKEEVRTNGKEVKNFEKKLDEWITRITN 472 56666666666656799999999999*****99999999999975 PP == domain 2 score: 9.9 bits; conditional E-value: 0.0021 ZapB 6 LeqLEskvqkaidtitlLqmeieeLkeeneelkeenreleeene 49 L +L + ++ d++t+L+++ ++L+e++++++ee++e+++e + T267830_3 480 LMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEK 523 56677777778899*************************95533 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.4 0.034 15 23 80 .. 441 499 .. 437 504 .. 0.68 2 ? 6.0 3.8 0.039 17 32 81 .. 481 530 .. 474 545 .. 0.69 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.034 Occludin_ELL 23 eYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkk 80 +Y+el++e+++ k+++++e++l+e ++ ++ +k ++ l e+k + e + + T267830_3 441 NYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKD-LMELKTTARelRDECTSLSN 499 799999999999999999999999987777766666666.44555444323344444444 PP == domain 2 score: 6.0 bits; conditional E-value: 0.039 Occludin_ELL 32 eevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkr 81 e++ + +eL++e+ +l+++ ++ +++ + + +e +++k++++++ek+ + T267830_3 481 MELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIK 530 45566667777777777777777777777777777777777777777654 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.7 0.43 1.9e+02 59 114 .. 426 480 .. 412 483 .. 0.73 2 ? 11.9 8.9 0.00038 0.17 49 113 .. 474 538 .. 470 544 .. 0.91 3 ? -1.3 0.1 4.2 1.8e+03 119 147 .. 562 591 .. 556 593 .. 0.76 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.43 ADIP 59 netirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklkne 114 + +i +l+ e r +s+++ lk+++ +e++ ++k+ + ++++++e+ lk + T267830_3 426 ENDIDELREEGFR-RSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDL 480 5556666666555.788888888888888888888888888888888888888865 PP == domain 2 score: 11.9 bits; conditional E-value: 0.00038 ADIP 49 drdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklkn 113 ++ l+ +l++t r+l+ e ++l+++ ++l++++++ e e+ +++e+ ek++k+ eq l++ T267830_3 474 EKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQE 538 56666777899**************************************************9986 PP == domain 3 score: -1.3 bits; conditional E-value: 4.2 ADIP 119 qrlknalqqi.ktqyahelkkkdreiekLk 147 ++l+n+lq+i + + + ++ +++i+++k T267830_3 562 TKLENTLQDIiQENFPNLARQANIQIQEIK 591 688888888536678888888888888887 PP >> Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 11.4 0.00087 0.38 18 113 .. 439 533 .. 426 541 .. 0.90 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00087 Atg14 18 rnrlyekrerlaklksekeslkkkieealelkeeaeqledkiknkkakleeiksliaelrerlqelkdklsqlkkeieekkkklaklsdklkkrrs 113 r+ + e++e+++ +e + ++kk++e +++ ++ae++ ++++ +k+ ++e++ + +l++r+ +l++++s +e++e k++ + + + +k r++ T267830_3 439 RSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIK-RNE 533 567899**************************************************************************998777777775.333 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 7.9 0.019 8.2 202 351 .. 440 592 .. 437 596 .. 0.76 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.019 Prominin 202 qnyeeleehvsdd...LddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCq..teeC 296 ny+el+e+v ++ +++ +k+l + + + +++ ++L++l +l + +e +++ ++++ +L + s +++ ++++kr+ + + ++ +++ T267830_3 440 SNYSELKEEVRTNgkeVKNFEKKLDEWITRITNAE--KSLKDLMELKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKR-IKrnEQSL 536 57888888887542226666688888888877777..888888888888888888888888888888888888888888888875555444.44324777 PP Prominin 297 skilssleiekldtskcl.dqlpnvdevlealeevletnlssivkeglarlneipe 351 ++i + ++++ l + + +n +++ ++l++++++n+ +++++++ +++ei++ T267830_3 537 QEIWDYVKTPNLRLIGVPeSDGENGTKLENTLQDIIQENFPNLARQANIQIQEIKR 592 777777777777666665777899999*************************9987 PP >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 1.0 0.032 14 4 43 .. 444 483 .. 442 486 .. 0.88 2 ? 5.8 2.2 0.038 17 1 39 [. 500 538 .. 500 542 .. 0.86 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.032 FlaC_arch 4 elEnklsklsteletvkkeneelsksveeleenVkdllsL 43 el +++ e+++ +k+++e + +++ e++ kdl++L T267830_3 444 ELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMEL 483 7888999999999999999999999999999999999987 PP == domain 2 score: 5.8 bits; conditional E-value: 0.038 FlaC_arch 1 ridelEnklsklsteletvkkeneelsksveeleenVkd 39 r d+lE+++s ++ e++ +k+e + +k +++ e++ ++ T267830_3 500 RCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQE 538 7799******************98888888887777765 PP >> WD40_alt Alternative WD40 repeat motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.2 0.12 55 19 29 .. 441 451 .. 437 471 .. 0.78 2 ? 5.4 0.9 0.035 15 13 32 .. 501 520 .. 491 523 .. 0.87 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.12 WD40_alt 19 rvseLeeEVrt 29 seL+eEVrt T267830_3 441 NYSELKEEVRT 451 569******98 PP == domain 2 score: 5.4 bits; conditional E-value: 0.035 WD40_alt 13 qeqlkvrvseLeeEVrtLrK 32 +ql rvs +eeE++ +++ T267830_3 501 CDQLEERVSAMEEEMNEMKR 520 689*************9985 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 0.1 0.016 7.1 27 48 .. 461 482 .. 457 484 .. 0.93 2 ? 3.6 0.6 0.13 56 25 47 .. 497 519 .. 494 523 .. 0.73 3 ? -2.2 0.1 8.5 3.8e+03 39 49 .. 564 574 .. 563 589 .. 0.76 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.016 HSBP1 27 sriDdMssriDdLEksiadlmt 48 +++D+ +ri + Eks++dlm+ T267830_3 461 KKLDEWITRITNAEKSLKDLME 482 69*******************7 PP == domain 2 score: 3.6 bits; conditional E-value: 0.13 HSBP1 25 ilsriDdMssriDdLEksiadlm 47 + +r D++++r+ +E+ ++++ T267830_3 497 LSNRCDQLEERVSAMEEEMNEMK 519 56788888888888888887765 PP == domain 3 score: -2.2 bits; conditional E-value: 8.5 HSBP1 39 LEksiadlmtq 49 LE++++d++++ T267830_3 564 LENTLQDIIQE 574 67777777665 PP >> TMF_DNA_bd TATA element modulatory factor 1 DNA binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 3.3 0.11 49 36 71 .. 443 478 .. 426 481 .. 0.83 2 ? 4.5 8.2 0.071 31 15 65 .. 488 538 .. 475 544 .. 0.72 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.11 TMF_DNA_bd 36 kkLrkknkelekeikelkkkleklekeleeleerlk 71 ++L+++++ + ke+k+ +kkl++ +++ e++lk T267830_3 443 SELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLK 478 679999999999999999999999999999999887 PP == domain 2 score: 4.5 bits; conditional E-value: 0.071 TMF_DNA_bd 15 aqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekelee 65 +L+ E + Ls ++l++ ++ + ++++e+ e k +k++++ e++l+e T267830_3 488 RELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQE 538 467777777777777777777777777777777777777777777777765 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.2 2.4 1.1e+03 26 50 .. 440 464 .. 434 475 .. 0.84 2 ? 14.3 6.4 7.5e-05 0.033 29 87 .. 475 531 .. 468 542 .. 0.69 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 2.4 KLRAQ 26 akeaelkeelkekeqslrkseqEvd 50 ++ +elkee++++ ++++ +e+ +d T267830_3 440 SNYSELKEEVRTNGKEVKNFEKKLD 464 6778999999999999999988777 PP == domain 2 score: 14.3 bits; conditional E-value: 7.5e-05 KLRAQ 29 aelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesq 87 ++lk+ + +++ r + E sL+ r +qLe rv+++ ee++e +++ k ++k ++ T267830_3 475 KSLKDLME-LKTTARELRDECTSLSNRCDQLEERVSAMEEEMNEMKRE-EKFREKRIKR 531 45555444.4466799999***********************987744.3333222222 PP >> Fzo_mitofusin fzo-like conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 2.0 0.0052 2.3 97 156 .. 443 505 .. 434 508 .. 0.73 2 ? 2.4 1.2 0.2 90 120 137 .. 493 510 .. 482 541 .. 0.40 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0052 Fzo_mitofusin 97 qelsstfarLkqqvdetekelee...eikelekeiekleevqkkakllrnkatlleseLekfe 156 +el++ + ++v++ ek+l+e +i+++ek+++ l e++++a+ lr++ t+l+++ ++ e T267830_3 443 SELKEEVRTNGKEVKNFEKKLDEwitRITNAEKSLKDLMELKTTARELRDECTSLSNRCDQLE 505 466666666677788888888762225566778888888899999999999999998887766 PP == domain 2 score: 2.4 bits; conditional E-value: 0.2 Fzo_mitofusin 120 eikelekeiekleevqkk 137 e ++l++++++lee + T267830_3 493 ECTSLSNRCDQLEERVSA 510 333333333333322111 PP >> Macoilin Transmembrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 20.2 0.017 7.4 414 561 .. 395 544 .. 383 568 .. 0.75 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.017 Macoilin 414 asrqteqelrskissltseerslkselqqlkkend..llq......tklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeekkrkkeeeetaar 505 +sr+t + +++ s +ers s ++q end +l+ + + el ++ + + ++++++ek+L+e +++ek L++ k ++ r T267830_3 395 QSRKTRN-SKNQSASPPPKERSSSSAMEQSWMENDidELReegfrrSNYSELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTTA-----R 488 5666554.46666667777888888888776666511443111111456666666677778899999999999999999999998876666555.....4 PP Macoilin 506 avalaaasrsecteslkskkreleaeikkLekelklkeeqirelelkvqelrkyke 561 +s s++ + l ++ + +e e++ ++ e k +e++i++ e qe+ +y + T267830_3 489 ELRDECTSLSNRCDQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQEIWDYVK 544 4445577778999***************************************9954 PP >> Prefoldin_2 Prefoldin subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 1.3 0.06 26 66 103 .. 444 481 .. 440 484 .. 0.87 2 ? 5.9 5.7 0.025 11 65 101 .. 502 538 .. 495 540 .. 0.92 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.06 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS Prefoldin_2 66 eLeerketlekeiktlekqleklekeleelkeelqkkl 103 eL+e+ t ke+k+ ek+l++ +++++ +++l+ ++ T267830_3 444 ELKEEVRTNGKEVKNFEKKLDEWITRITNAEKSLKDLM 481 78888889999999999999999999999999999765 PP == domain 2 score: 5.9 bits; conditional E-value: 0.025 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS Prefoldin_2 65 eeLeerketlekeiktlekqleklekeleelkeelqk 101 ++Leer +e+e+++++++++ ek+++ +++lq+ T267830_3 502 DQLEERVSAMEEEMNEMKREEKFREKRIKRNEQSLQE 538 79******************************99997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1895 (0.116215); expected 326.1 (0.02) Passed bias filter: 656 (0.0402306); expected 326.1 (0.02) Passed Vit filter: 172 (0.0105483); expected 16.3 (0.001) Passed Fwd filter: 54 (0.00331166); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 37 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 3011.40 // Query: T315818_1 [L=2767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.26s 00:00:01.16 Elapsed: 00:00:00.52 # Mc/sec: 15222.92 // Query: T315818_2 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 15217.41 // Query: T315818_3 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 13882.55 // Query: T381548_1 [L=1493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7627.18 // Query: T381548_2 [L=1493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 7364.17 // Query: T381548_3 [L=1492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7622.07 // Query: T381536_1 [L=2077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.82 # Mc/sec: 7246.27 // Query: T381536_2 [L=2076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.59 # Mc/sec: 10066.24 // Query: T381536_3 [L=2076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 732 (0.0448915); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.75 # Mc/sec: 7918.78 // Query: T110547_1 [L=2228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.80 # Mc/sec: 7967.41 // Query: T110547_2 [L=2228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.75 # Mc/sec: 8498.57 // Query: T110547_3 [L=2227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 8727.49 // Query: T216719_1 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5798.29 // Query: T216719_2 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 5154.03 // Query: T216719_3 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.47 # Mc/sec: 6908.60 // Query: T166625_1 [L=2232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.80 # Mc/sec: 7981.72 // Query: T166625_2 [L=2232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.76 # Mc/sec: 8401.81 // Query: T166625_3 [L=2232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 9254.16 // Query: T176637_1 [L=621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.61 # Mc/sec: 2912.42 // Query: T176637_2 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 2860.83 // Query: T176637_3 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 3058.13 // Query: T359854_1 [L=2742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 11206.28 // Query: T359854_2 [L=2742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 10745.75 // Query: T359854_3 [L=2742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 11206.28 // Query: T260039_1 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 6259.67 // Query: T260039_2 [L=1465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 6447.87 // Query: T260039_3 [L=1465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 6163.41 // Query: T078926_1 [L=529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 2855.43 // Query: T078926_2 [L=529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-41 141.5 14.0 5e-41 141.1 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.066 13.2 10.2 0.27 11.2 3.0 2.2 2 BRE1 BRE1 E3 ubiquitin ligase 0.15 11.4 9.8 0.23 10.9 9.8 1.2 1 MscS_porin Mechanosensitive ion channel porin domain 0.17 10.3 11.8 0.24 9.8 11.8 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 0.57 8.9 12.3 1.5 7.5 12.0 1.6 1 Spc7 Spc7 kinetochore protein 1.2 9.1 12.9 1.9 8.5 12.9 1.2 1 Tropomyosin_1 Tropomyosin like 1.6 8.9 10.2 2.3 8.4 10.2 1.2 1 Muted Organelle biogenesis, Muted-like protein 4.8 7.1 12.6 6.3 6.7 11.2 1.7 2 ADIP Afadin- and alpha -actinin-Binding 5.1 7.1 10.0 7.5 6.5 10.0 1.2 1 DivIVA DivIVA protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.1 14.0 2.8e-44 5e-41 126 312 .] 116 303 .. 113 303 .. 0.96 Alignments for each domain: == domain 1 score: 141.1 bits; conditional E-value: 2.8e-44 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078926_2 116 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 213 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078926_2 214 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 303 ***************************************************************************************975 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 2.7 0.016 29 7 52 .. 190 235 .. 185 243 .. 0.82 2 ? 11.2 3.0 0.00015 0.27 14 69 .. 243 298 .. 232 301 .. 0.86 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.016 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamr 52 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078926_2 190 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEA 235 5677788899999999999999999999999999999998776665 PP == domain 2 score: 11.2 bits; conditional E-value: 0.00015 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078926_2 243 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 298 445667788889**************************************999986 PP >> MscS_porin Mechanosensitive ion channel porin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 9.8 0.00012 0.23 85 167 .. 186 269 .. 185 291 .. 0.93 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00012 MscS_porin 85 qrllqtssqlqelqeqlaqlnsqlrelqtrperaqqqltearqrlqeirnrLnssaasgt.plsqaqrtalqaelaalkaqiee 167 ++ +++++ + ++ e+l +++l+el+ ++r+ ++ + +q+ ++++ ++s+++g+ +ls+a + + e a+ ka+ ++ T078926_2 186 TKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEaALSNAHCKLAELEDALQKAKQDM 269 567899999*******************************************999999999********************998 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 11.8 0.00013 0.24 411 502 .. 195 282 .. 185 295 .. 0.86 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00013 CALCOCO1 411 WaqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078926_2 195 VTQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 282 444444444....46999*******************************9999999**********************************85 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 12.0 0.00081 1.5 198 287 .. 185 274 .. 176 292 .. 0.83 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00081 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkiv 287 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ T078926_2 185 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLK 274 567789999999999999999999999999999999999999999999999999999999998888888888888888887777666654 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 12.9 0.001 1.9 7 102 .. 178 275 .. 176 282 .. 0.86 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.001 Tropomyosin_1 7 leaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkett 100 +eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ + T078926_2 178 VEAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACML 273 566666789***************************************9999888888888888877666549999************99987666 PP Tropomyosin_1 101 ek 102 ++ T078926_2 274 KQ 275 55 PP >> Muted Organelle biogenesis, Muted-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 10.2 0.0013 2.3 56 141 .. 191 278 .. 184 284 .. 0.82 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0013 Muted 56 lpkcleslkenLsevnkkleaalekverllqkeleeeqekserlqekeekrkkeweeFlkelqkkkeevDeefeekveelk...ekYse 141 + ++++ enL ++++l++++ +++rl + e+++++ +l+++ +++++ e l++ + k +e+++ +++ +++ ++Y+e T078926_2 191 VKATVTQQGENLRRTKDELNELNCMIQRLTAE-VENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMAcmlKQYQE 278 4444555689********************99.77777799******************************999987765422266666 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 3.5 0.0057 10 94 139 .. 185 230 .. 184 232 .. 0.91 2 ? 6.7 11.2 0.0035 6.3 49 128 .. 203 279 .. 196 285 .. 0.70 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0057 ADIP 94 qakerqlekklktleqklknekeelqrlknalqqiktqyahelkkk 139 q k+ + +++++++ + l+++k+el+ l+ +q++ + +++++ ++ T078926_2 185 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQR 230 7899999999************************999999999887 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0035 ADIP 49 drdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqi 128 +r +++ ++ln i++l+ae e+++++ +l++ ++q+e++ +a++ ++ +kl++le++l++ k++++ + ++ q++ T078926_2 203 RRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQG---EAALSNAHCKLAELEDALQKAKQDMACMLKQYQEV 279 455566667777777777777777777777777777777654...45566778888888888888888887776666655 PP >> DivIVA DivIVA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 10.0 0.0041 7.5 42 126 .. 189 272 .. 184 277 .. 0.69 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0041 HHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS DivIVA 42 eelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkea..eliikeAekkaekiveeaeeeakkiaeeieelkrqarlf 126 ee+k++v ++ e+l + k+ ++L+ + q+ + ev + ++ + e ++++e++ e+ +++a+ +++++++ +++ k+ ++ T078926_2 189 EEVKATVTQQGENLRRTKDELNELN---CMIQRLTAEVENDKQQRCklEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACM 272 4555566666666665555555554...556777777776666655115678899999999*****************999987765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1185 (0.0726726); expected 326.1 (0.02) Passed bias filter: 554 (0.0339752); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 2225.56 // Query: T078926_3 [L=529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.3 0.0 0.0016 18.0 0.0 1.1 1 Filament Intermediate filament protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 9.5e-08 0.0016 87 126 .. 77 116 .. 75 118 .. 0.94 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 9.5e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Filament 87 lrkkyekelnkreevEaelkalrkdldeatlarvdLekkv 126 + +ye+el++r ++E+e+ l+kd+ ++l+ +dLe+ v T078926_3 77 FLLRYEEELALRATAENEFMMLKKDVGYTYLHETDLEANV 116 5679*********************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 2440.93 // Query: T227645_1 [L=5188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1247 (0.0764749); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.52s 00:00:03.21 Elapsed: 00:00:00.92 # Mc/sec: 16132.59 // Query: T227645_2 [L=5188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1264 (0.0775175); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.64u 0.46s 00:00:03.10 Elapsed: 00:00:00.85 # Mc/sec: 17461.16 // Query: T227645_3 [L=5188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 969 (0.059426); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.43s 00:00:02.62 Elapsed: 00:00:00.80 # Mc/sec: 18552.48 // Query: T138097_1 [L=2717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.81 # Mc/sec: 9596.14 // Query: T138097_2 [L=2716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.25s 00:00:01.35 Elapsed: 00:00:00.73 # Mc/sec: 10643.86 // Query: T138097_3 [L=2716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.67 # Mc/sec: 11597.04 // Query: T158302_1 [L=396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.56 # Mc/sec: 1987.52 // Query: T158302_2 [L=396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.55 # Mc/sec: 2059.80 // Query: T158302_3 [L=395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.52 # Mc/sec: 2173.13 // Query: T320583_1 [L=2399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.64 # Mc/sec: 10723.64 // Query: T320583_2 [L=2398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9397.63 // Query: T320583_3 [L=2398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 9800.39 // Query: T361950_1 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 10663.51 // Query: T361950_2 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.77 # Mc/sec: 8586.21 // Query: T361950_3 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 9581.71 // Query: T375848_1 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.3 7.1 24.4 4.8 6.6 24.4 1.1 1 AAA_15 AAA ATPase domain Domain annotation for each model (and alignments): >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 24.4 0.00029 4.8 93 191 .. 503 605 .. 461 640 .. 0.75 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00029 AAA_15 93 ikkkilklksk...kkskeyestlkskgkkkadlllekkekelkkllkdkklklkkneysdekisvekkkskkeleeekeeklekekaeikid.kedlkk 188 kkk++k+k++ +k+ e+e++ k+++kk+++ + +k++k+ k++++k k k+e ++e+++ k+k kk ++e k+e ++++k+e k++ k++ +k T375848_1 503 AKKKKKKEKKErekEKERERERERKKERKKERKKERKKERKKERKRKRKKGRKERKKERKKERKKERKRKRKKGKKERKKERKKERKKERKKErKKRKRK 602 3333333333333488888888888888899999999999999999999999999999999999999999988888888888888877777774444443 PP AAA_15 189 lik 191 k T375848_1 603 EKK 605 333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2078 (0.127438); expected 326.1 (0.02) Passed bias filter: 714 (0.0437876); expected 326.1 (0.02) Passed Vit filter: 483 (0.029621); expected 16.3 (0.001) Passed Fwd filter: 129 (0.0079112); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.59u 0.50s 00:00:04.09 Elapsed: 00:00:01.13 # Mc/sec: 4341.44 // Query: T375848_2 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1818 (0.111493); expected 326.1 (0.02) Passed bias filter: 657 (0.0402919); expected 326.1 (0.02) Passed Vit filter: 432 (0.0264933); expected 16.3 (0.001) Passed Fwd filter: 106 (0.00650067); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.24u 0.42s 00:00:03.66 Elapsed: 00:00:01.01 # Mc/sec: 4900.23 // Query: T375848_3 [L=1729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-05 23.9 11.2 2.2e-05 23.9 11.2 2.1 2 DUF1510 Protein of unknown function (DUF1510) ------ inclusion threshold ------ 0.025 14.5 11.7 0.042 13.8 11.7 1.3 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmembr 0.36 9.3 79.0 0.52 8.8 79.0 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 0.54 9.9 13.9 2.4 7.8 13.9 1.8 1 IncA IncA protein 1.7 6.9 6.2 3.3 5.9 6.2 1.4 1 SID-1_RNA_chan dsRNA-gated channel SID-1 4.1 6.8 27.5 6.6 6.1 27.5 1.2 1 AAA_15 AAA ATPase domain 5.4 5.5 31.9 9.3 4.7 31.9 1.3 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 11.2 9.4e-09 2.2e-05 19 110 .. 471 571 .. 466 575 .. 0.42 2 ? -4.0 40.5 3.2 7.5e+03 42 117 .. 544 615 .. 540 642 .. 0.41 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 9.4e-09 DUF1510 19 ligivlllivivaaslfigsksde........eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekek..eedaee 108 +ig + l+i++ + ++f g+ ++k+++++++e e e k+e k ++e+++e +ke ++++++e +e++e+e ke ++e++k +++ +e T375848_3 471 IIGFIFLVILFCGFQIFYGECALLlsfplfpgQKKKEKRKKRERERERKRERKRKKERKKERKKERKKERKKER-KEKKEKERKERKKERKKerKKERKE 569 68889999999999999998754488998887333333333333333333333333333332222222222222.2222222222222222201222222 PP DUF1510 109 na 110 ++ T375848_3 570 KK 571 11 PP == domain 2 score: -4.0 bits; conditional E-value: 3.2 DUF1510 42 eeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteess 117 ++ek++++ +e ++e++k++kke +e++e+e ke ++++++e k+e ++e+ ++ekek++++++ +e t++++ T375848_3 544 RKEKKEKERKERKKERKKERKKERKEKKEKERKERKKERKKERKKERKKER----KKEKEKKRKEKKGKETTNQEN 615 233333333333333333333333333333333333333333222222222....222222222222222222222 PP >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 11.7 1.8e-05 0.042 51 191 .. 466 611 .. 465 633 .. 0.33 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.8e-05 HHHS-STTHHHHHHHHHHHHHHH..HHHHHHHHHH....H-S-----HHHHHHHTTHHHHHHH--------------.----------------- CS Neur_chan_memb 51 SlvipLigkYLlftmvfvtlsiv..etvfVlnvhh....rsprthtmpawvrkvfldklprllfmkrpsevkdnekklssgasseaeelilsksk 139 Slv +ig ++ + +f + i e++ l + +++++++++++ r+ ++ + + k++++++++e+k++ ++++e+e+ ++k++ T375848_3 466 SLVSGIIG-FIFLVILFCGFQIFygECALLLSFPLfpgqKKKEKRKKRERERERKRERKRKKERKKERKKERKKERKKERKEKKEKERKERKKER 559 56666666.66666666666665334444444433211122222222222222222222222222222222222222233333333333333333 PP ---------------------SS---TTGGG--.....--------TTHHHH CS Neur_chan_memb 140 seskkaklseeqgsekastckckckegeeaspstqlskeelspelkkavegv 191 ++ +k++ +e++++e+++ +k +ke ++ ++++++++e++++ kk e++ T375848_3 560 KKERKKERKEKKEKERKERKKERKKERKKERKKERKKEKEKKRKEKKGKETT 611 3222222222222222222222222222221211112222222222222222 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 79.0 0.00022 0.52 115 230 .. 503 620 .. 501 665 .. 0.48 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00022 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 115 kkkeekkkkeekekesekerkqkeel.kekrrpkekekekekkkkk.ekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgkee 212 +kk+ek+kk+e+e+e+++erk+k+e+ ke++++++ke++ke+k+kk ++++e++ker++e+++er++k++k++++++k+++ke++k+++k++k+e++k++ T375848_3 503 QKKKEKRKKRERERERKRERKRKKERkKERKKERKKERKKERKEKKeKERKERKKERKKERKKERKEKKEKERKERKKERKKERKKERKKERKKEKEKKR 602 4555666666666666666665555534444445555554443333033344455555555555555555444444444444444444444444444444 PP XXXXXXXXXXXXXXXXXX CS MIP-T3 213 erskdeerekeadkgkdr 230 +++k +e ++++++ r T375848_3 603 KEKKGKETTNQENQQIWR 620 444433333333333333 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 13.9 0.001 2.4 19 171 .. 467 613 .. 466 632 .. 0.46 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.001 IncA 19 iasgiallilfasslgalisiilgivllAlgvvLlalgllllllkapvlqsedekieesrlqeelselesrlaeleeeleqleerlaeleaelkdleedl 118 ++sgi+++i++ l + + i+ g ++l l + L+ + ++ +k++++ +e+++++ +++ ++r +e +e +++++ +e e++ ++ e+ + T375848_3 467 LVSGIIGFIFLVI-LFCGFQIFYGECALLLSFPLFPGQKKKEKRKKRERERERKRERK----RKKERKKERKKERKKERKKERKEKKEKERKERKKERKK 561 5789999888866.88888888888888888888888886666666666655555555....33333333333333444444444444444444444333 PP IncA 119 eslqeelksvesrlesleesikelakeirelr..elsdlkeevqelrselerlqe 171 e+++e ++++e++ ++ +++ k+ +k + r e++++ke+ +++++ e + + T375848_3 562 ERKKERKEKKEKERKERKKERKKERK---KERkkERKKEKEKKRKEKKGKETTNQ 613 33332222222222222222222222...22222222222222222222222222 PP >> SID-1_RNA_chan dsRNA-gated channel SID-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 6.2 0.0014 3.3 135 220 .. 478 580 .. 466 628 .. 0.39 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0014 SID-1_RNA_chan 135 lllllivlvenvre................................................ssiekevkesrksssasaslesvssklksests 181 ++l++ + + + +e+++ T375848_3 478 VILFCGFQIF---YgecalllsfplfpgqkkkekrkkrerererkrerkrkkerkkerkkerK---------------------------KERKK 542 2222222222...02234567777777777666666555555444433332222211111110...........................11111 PP SID-1_RNA_chan 182 sveeeddydtlediesdknvirtkkslvvsdlsrkdkev 220 + +e+++++ ++ +++++ r+k+ ++ rk++++ T375848_3 543 ERKEKKEKE-RKERKKERKKERKKERKEKKEKERKERKK 580 111111111.11111111111111111111111111111 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 27.5 0.0028 6.6 90 192 .. 520 621 .. 483 660 .. 0.52 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0028 AAA_15 90 yleikkkilklksk.kkskeyestlkskgkkkadlllekkekelkkllkdkklklkkneysdekisvekkks.........kkeleeekeeklekekaei 179 ++++ kk+ k++ k + +ke+ ++ ekkeke k+++k++k++ kk++++++++ +++k+ +k+ ++++ek+ kek+ T375848_3 520 RERKRKKERKKERKkERKKERKKER-----------KEKKEKERKERKKERKKERKKERKEKKEKERKERKKerkkerkkeRKKERKKEKEKKRKEKKGK 608 2222222222222222222222222...........2334444444444444444444444444444444441111111124444444444444555555 PP AAA_15 180 kidkedlkklikk 192 ++++++ + ++++ T375848_3 609 ETTNQENQQIWRQ 621 5555555555554 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 31.9 0.004 9.3 231 314 .. 518 602 .. 495 657 .. 0.41 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.004 Presenilin 231 kaevakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaes.eaeesseekeeeessesseeeeeeeeee 314 +++++k+++e+++e+k+e+++e++ke+++++e+++k++++++++e+++e+++++e+ ++e+++e+k+e+++++++e+++e+e+++ T375848_3 518 RKRERKRKKERKKERKKERKKERKKERKEKKEKERKERKKERKKERKKERKEKKEKeRKERKKERKKERKKERKKERKKEKEKKR 602 1111111111111111111111111111111111111111111111111111111101111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2247 (0.137802); expected 326.1 (0.02) Passed bias filter: 820 (0.0502882); expected 326.1 (0.02) Passed Vit filter: 587 (0.035999); expected 16.3 (0.001) Passed Fwd filter: 162 (0.00993499); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 4.45u 0.49s 00:00:04.94 Elapsed: 00:00:01.11 # Mc/sec: 4456.19 // Query: T302117_1 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1509 (0.0925426); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:00.82 # Mc/sec: 2494.50 // Query: T302117_2 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1305 (0.0800319); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.48s 00:00:01.90 Elapsed: 00:00:00.78 # Mc/sec: 2622.43 // Query: T302117_3 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 955 (0.0585674); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.40s 00:00:01.52 Elapsed: 00:00:00.71 # Mc/sec: 2880.98 // Query: T202691_1 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-37 127.7 0.2 5.3e-37 127.0 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.0 0.2 3.2e-41 5.3e-37 1 168 [. 1089 1253 .. 1089 1254 .. 0.87 Alignments for each domain: == domain 1 score: 127.0 bits; conditional E-value: 3.2e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202691_1 1089 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1182 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202691_1 1183 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1253 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 8487.13 // Query: T202691_2 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.53 # Mc/sec: 10563.48 // Query: T202691_3 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-10 39.9 0.3 6.2e-10 39.1 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.1 0.3 3.8e-14 6.2e-10 33 96 .. 1487 1551 .. 1482 1557 .. 0.95 Alignments for each domain: == domain 1 score: 39.1 bits; conditional E-value: 3.8e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202691_3 1487 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1551 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 10563.48 // Query: T316532_1 [L=6896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.6 13.6 2.1e-05 24.7 13.6 1.3 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 3.1 5.9 10.6 4.5 5.3 10.6 1.1 1 CDC45 CDC45-like protein 4.3 7.8 42.0 8.6 6.9 42.0 1.5 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 13.6 3.8e-09 2.1e-05 8 71 .. 2152 2211 .. 2148 2342 .. 0.67 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.8e-09 DUF1777 8 rdrrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr 71 r+r+rdr+r+ + +++r+rdr+ +r +r+rer+++r+r+r+ er+r+r+r+r+r+++r+++ T316532_1 2152 RERERDRERETETERQRQRDRETER---QRQRERDTERERQRET-ERHRERERERERERERSQH 2211 2233333222222222233333333...3334444444443333.5555555555445444444 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.6 0.00083 4.5 137 191 .. 2154 2208 .. 2136 2264 .. 0.51 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.00083 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrr 191 +e + ++++e+e ++++d+e+e ++++e++ +r++++++e+++e+e+er+r+r+r T316532_1 2154 RERDRERETETERQRQRDRETERQRQRERDTERERQRETERHRERERERERERER 2208 1111111111111111111111111111111111111111111222222222222 PP >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 42.0 0.0016 8.6 35 97 .. 2151 2209 .. 2146 2211 .. 0.56 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0016 PRP38_assoc 35 rsrrsrsrrrsrtrdrsrsrersrererrsrstprdrdrardRdrrrsk.rsreRdrsrsrdrd 97 ++r+r+r+r++ ++r+r r+r++er r r+rd +r+R+r+ ++ r+reR+r+r+r+r+ T316532_1 2151 ERERERDRERETETERQRQRDRETERQRQ-----RERDTERERQRETERhRERERERERERERS 2209 34555556666656666655555555555.....555555555555553366666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1587 (0.0973261); expected 326.1 (0.02) Passed bias filter: 332 (0.0203606); expected 326.1 (0.02) Passed Vit filter: 102 (0.00625537); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.18u 0.46s 00:00:03.64 Elapsed: 00:00:00.79 # Mc/sec: 24972.51 // Query: T316532_2 [L=6896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-05 23.4 19.1 0.00016 21.9 19.1 1.8 1 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 19.1 9.6e-09 0.00016 4 64 .. 2152 2209 .. 2150 2280 .. 0.58 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.6e-09 DUF1777 4 srdrr.drrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrr 64 +r+r+ +r+r+r+rdr+++++r+rdrdr+r + +rer+r+r+r+++r er+r+r+r+r+ T316532_2 2152 EREREtERERQRQRDRDRETERQRDRDRER---ETQRERDRERQRDTER-EREREREREREA 2209 344432222223233222222333333333...2334444444443333.333333333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 676 (0.0414571); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.36u 0.42s 00:00:02.78 Elapsed: 00:00:00.68 # Mc/sec: 29012.18 // Query: T316532_3 [L=6895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1396 (0.0856127); expected 326.1 (0.02) Passed bias filter: 326 (0.0199926); expected 326.1 (0.02) Passed Vit filter: 98 (0.00601006); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.98u 0.51s 00:00:03.49 Elapsed: 00:00:00.81 # Mc/sec: 24352.37 // Query: T182471_1 [L=2021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 10706.92 // Query: T182471_2 [L=2021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 11336.74 // Query: T182471_3 [L=2021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.045 13.3 0.5 0.08 12.5 0.5 1.3 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.5 4.9e-06 0.08 6 15 .. 537 546 .. 534 546 .. 0.92 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 4.9e-06 DUF1725 6 WMELEnIILS 15 WM LEnI+LS T182471_3 537 WMNLENIMLS 546 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11118.73 // Query: T138124_1 [L=7222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1104 (0.0677051); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.55u 0.38s 00:00:02.93 Elapsed: 00:00:00.72 # Mc/sec: 28695.71 // Query: T138124_2 [L=7221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1303 (0.0799092); expected 326.1 (0.02) Passed bias filter: 335 (0.0205446); expected 326.1 (0.02) Passed Vit filter: 117 (0.00717527); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.03u 0.43s 00:00:03.46 Elapsed: 00:00:00.77 # Mc/sec: 26828.64 // Query: T138124_3 [L=7221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1227 (0.0752484); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 110 (0.00674598); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.96u 0.45s 00:00:03.41 Elapsed: 00:00:00.77 # Mc/sec: 26828.64 // Query: T260515_1 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 775 (0.0475285); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 1705.05 // Query: T260515_2 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 862 (0.052864); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 1633.97 // Query: T260515_3 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 861 (0.0528026); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 1699.33 // Query: T065988_1 [L=2270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-16 58.6 0.0 9.2e-16 57.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.089 12.9 0.0 0.84 9.8 0.0 2.2 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.9 0.0 1.1e-19 9.2e-16 3 155 .. 442 593 .. 440 596 .. 0.85 Alignments for each domain: == domain 1 score: 57.9 bits; conditional E-value: 1.1e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065988_1 442 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 537 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065988_1 538 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 593 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.0 0.093 7.5e+02 3 28 .. 777 802 .. 775 812 .. 0.82 2 ? 9.8 0.0 0.0001 0.84 65 98 .. 833 866 .. 819 869 .. 0.80 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.093 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065988_1 777 EEPWVTLDIMATQIQFLCDTKVNYSV 802 689*****************766665 PP == domain 2 score: 9.8 bits; conditional E-value: 0.0001 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065988_1 833 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 866 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 12488.62 // Query: T065988_2 [L=2269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-17 62.7 0.0 6.7e-17 61.9 0.0 1.3 1 RNase_H RNase H 1.5e-05 25.0 0.0 2.6e-05 24.3 0.0 1.4 1 rve Integrase core domain ------ inclusion threshold ------ 0.025 14.0 0.1 0.071 12.5 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.9 0.0 1.2e-20 6.7e-17 8 135 .. 1389 1519 .. 1385 1525 .. 0.87 Alignments for each domain: == domain 1 score: 61.9 bits; conditional E-value: 1.2e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065988_2 1389 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1480 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065988_2 1481 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1519 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 4.8e-09 2.6e-05 55 116 .. 1694 1754 .. 1691 1754 .. 0.89 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 4.8e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065988_2 1694 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 1754 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.3e-05 0.071 126 221 .. 1042 1129 .. 1007 1130 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.3e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065988_2 1042 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1128 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065988_2 1129 V 1129 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 12727.89 // Query: T065988_3 [L=2269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00027 20.4 0.0 0.00042 19.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 2.6e-08 0.00042 152 210 .. 590 648 .. 573 649 .. 0.91 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.6e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065988_3 590 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 648 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 12020.78 // Query: T061578_1 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 15162.40 // Query: T061578_2 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 15162.40 // Query: T061578_3 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4 6.7 9.3 6.5 6.0 9.3 1.2 1 DUF2967 Protein of unknown function (DUF2967) 7.7 5.9 7.5 13 5.2 7.5 1.2 1 Spt20 Spt20 family Domain annotation for each model (and alignments): >> DUF2967 Protein of unknown function (DUF2967) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.3 0.00079 6.5 33 62 .. 2416 2445 .. 2399 2458 .. 0.61 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00079 DUF2967 33 shftfkedaqqrhqqqqqkqqqqqqqgrra 62 sh t + r+qqqqq+qqqqqqq + T061578_3 2416 SHRTRLTPSLWRQQQQQQQQQQQQQQQKPV 2445 666666666677777777777777776654 PP >> Spt20 Spt20 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 7.5 0.0016 13 112 127 .. 2428 2443 .. 2402 2463 .. 0.56 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0016 Spt20 112 qnqqqqqqqqqqqqqq 127 q+qqqqqqqqqqqqq+ T061578_3 2428 QQQQQQQQQQQQQQQK 2443 2222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.27s 00:00:01.36 Elapsed: 00:00:00.55 # Mc/sec: 15438.08 // Query: T376918_1 [L=663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 933 (0.0572182); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.21s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 3951.52 // Query: T376918_2 [L=663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 833 (0.0510855); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 3647.56 // Query: T376918_3 [L=663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-27 94.5 0.1 8.5e-27 93.8 0.1 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.8 0.1 5.2e-31 8.5e-27 261 348 .. 1 88 [. 1 92 [. 0.96 Alignments for each domain: == domain 1 score: 93.8 bits; conditional E-value: 5.2e-31 HHHHHHHHHHHS-EEE.TTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHH CS Transposase_22 261 kdkilkavrekGrvtl.kGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalk 348 k+ +l+av+ek +vt+ k i lt d+saet +arr+w++++ +lk++++qPr+lyPakls +G i+ f dk++lr++ t P lk T376918_3 1 KESFLRAVKEKHQVTY*G-KSITLTVDFSAETPQARRDWGPIFSLLKQNNYQPRILYPAKLSNRYEGKIQTFSDKQMLREFAITTPLLK 88 7899**********9663.68***************************************************************99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3793.46 // Query: T376359_1 [L=6034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.60 # Mc/sec: 28770.41 // Query: T376359_2 [L=6034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.60 # Mc/sec: 28770.41 // Query: T376359_3 [L=6034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.31s 00:00:01.73 Elapsed: 00:00:00.61 # Mc/sec: 28298.77 // Query: T337285_1 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.55 # Mc/sec: 14101.29 // Query: T337285_2 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 520 (0.0318901); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 13606.51 // Query: T337285_3 [L=2710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.8 9.6 1 9.1 1.1 2.6 2 PBAN Pheromone biosynthesis activating neuropeptide (PBA Domain annotation for each model (and alignments): >> PBAN Pheromone biosynthesis activating neuropeptide (PBAN) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 1.1 6.3e-05 1 90 160 .. 182 248 .. 149 251 .. 0.50 2 ? 8.9 2.2 7e-05 1.1 91 162 .. 251 318 .. 246 335 .. 0.74 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 6.3e-05 PBAN 90 viftpklgralakdqtseslefiprlgrklsedtpatsadeesiqpdaieaerrtryfsprlgrtlsfspr 160 +ftp++ r+ d + + f+prl r +ed p+ + +++ +r+ f+prl rt +f r T337285_3 182 GVFTPRITRTE--DLPTRAGVFTPRLTR--TEDFPTRAGVFTPRLTRTEDFPTRAGVFTPRLTRTEDFPTR 248 24455555544..333333345555554..34555444444443344455555555555555555555444 PP == domain 2 score: 8.9 bits; conditional E-value: 7e-05 PBAN 91 iftpklgralakdqtseslefiprlgrklsedtpatsadeesiqpdaieaerrtryfsprlgrtlsfsprlg 162 +ftp+l r+ d + + f+prl r +ed p+ + +++ +r+ f+prl rt +f r g T337285_3 251 VFTPRLTRTE--DFPTRAGVFTPRLTR--TEDFPTRAGVFTPRLTRTEDFPTRAGVFTPRLTRTEDFPTRAG 318 7888888887..555666678999988..5888888877766666788888899999999999888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 13844.37 // Query: T031872_1 [L=2577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 13652.52 // Query: T031872_2 [L=2576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 13159.82 // Query: T031872_3 [L=2576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 13399.09 // Query: T338389_1 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 19380.91 // Query: T338389_2 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-16 61.0 0.0 1.7e-16 60.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.034 14.2 0.0 0.064 13.3 0.0 1.5 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.3 0.0 2.1e-20 1.7e-16 1 206 [. 107 268 .. 107 279 .. 0.91 Alignments for each domain: == domain 1 score: 60.3 bits; conditional E-value: 2.1e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+ +++yRp+ d+++l ++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T338389_2 107 VPKPRTKDYRPV----QDLRLLHQATVT---------LHPAVPNPYTLLGL------------LPAEDSCFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 181 69999******7....7***********.........99999998888555............55788******************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEEC..TTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrY..aDDililskskeelqelleaveewlkesglki 198 ++ +++y++++lpqG+++SP++f ++ + l+++ +r ++ +++ +DD+l+ + + + + +a+ ++l+++g+k+ T338389_2 182 -------------------ESGVTTQYTWTRLPQGFKNSPTIFGETLPRDLQKFPTR--DLDCVLLq*VDDLLLGHPTAVGCAKGTDALLRHLEDCGYKV 260 ...................34569********************9999999999997..9******888******************************* PP EGGG-EEE CS RVT_1 199 npeKtklv 206 +++K +++ T338389_2 261 SKKKAQIC 268 *******9 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 7.9e-06 0.064 39 118 .. 1488 1565 .. 1486 1566 .. 0.85 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 7.9e-06 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgir.vsftrpgrpqdnGkvErfnrtlkde 118 a+++ ++ +a tvi l + ++g p + sD +++ ++ ++f + l i+ + p++pq+ GkvE++ ++lk++ T338389_2 1488 AFPTGSK-KATTVISSLLSDIIPQFGL-PTSIQSDSRPAFSNQVSQAFFQALSIQ*N-LYIPYSPQSSGKVEQTDGLLKTH 1565 5566777.7888888888888888888.*************************9774.3579************9999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 18745.47 // Query: T338389_3 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 20060.94 // Query: T125534_1 [L=4449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.62 # Mc/sec: 20528.76 // Query: T125534_2 [L=4449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.84 # Mc/sec: 15152.18 // Query: T125534_3 [L=4448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.42s 00:00:02.16 Elapsed: 00:00:00.82 # Mc/sec: 15518.26 // Query: T125102_1 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 538 (0.032994); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.76 # Mc/sec: 7724.24 // Query: T125102_2 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 7623.93 // Query: T125102_3 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.72 # Mc/sec: 8153.37 // Query: T008106_1 [L=2008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 11047.21 // Query: T008106_2 [L=2007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.52 # Mc/sec: 11041.70 // Query: T008106_3 [L=2007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 10439.43 // Query: T381757_1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 3053.39 // Query: T381757_2 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 560 (0.0343432); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48 # Mc/sec: 3307.83 // Query: T381757_3 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-06 26.2 0.1 1.9e-05 25.2 0.1 1.4 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.1 1.1e-09 1.9e-05 34 99 .. 435 499 .. 421 507 .. 0.90 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 1.1e-09 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381757_3 435 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 499 579***********************************************99987.7777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 2737.52 // Query: T027560_1 [L=1174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0046 17.1 25.2 0.0046 17.1 25.2 2.2 2 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 1.2 0.032 5.2e+02 83 112 .. 40 69 .. 17 85 .. 0.47 2 ! 17.1 25.2 2.8e-07 0.0046 3 69 .. 409 475 .. 404 519 .. 0.58 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.032 DUF1777 83 skeskersrekekkeskkeeeeededeeee 112 +k+++++++ek k+++ ++ e+ ++e+e+ T027560_1 40 KKNEEKEKEEKGKMQQAADGWEKIKREDEK 69 222222222222222222222222222222 PP == domain 2 score: 17.1 bits; conditional E-value: 2.8e-07 DUF1777 3 rsrdrrdrrrdrrrdrrdrdr.rdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrr 69 r+r+r+++r+++r+++r+++r ++r+++r++ ++++++e+e++r+r++ rrer+r+r+r+r+ r++ + T027560_1 409 RKRERERKRKRERERERKKERkKERKKERKK-ERKKRKEEENERERGEGRRERERDRERERKGRKETS 475 3333332222222222222221133333333.222233344455555555555555555555555443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1668 (0.102294); expected 326.1 (0.02) Passed bias filter: 496 (0.0304183); expected 326.1 (0.02) Passed Vit filter: 195 (0.0119588); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.78 # Mc/sec: 4305.92 // Query: T027560_2 [L=1174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1670 (0.102416); expected 326.1 (0.02) Passed bias filter: 441 (0.0270453); expected 326.1 (0.02) Passed Vit filter: 172 (0.0105483); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.77 # Mc/sec: 4361.84 // Query: T027560_3 [L=1174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.025 12.8 12.4 0.036 12.3 12.4 1.1 1 CDC45 CDC45-like protein 7.9 5.1 17.8 11 4.6 17.8 1.1 1 NARP1 NMDA receptor-regulated protein 1 8.8 4.8 34.3 13 4.2 34.3 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 12.4 6.6e-06 0.036 137 252 .. 406 536 .. 371 538 .. 0.51 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 6.6e-06 CDC45 137 eeeeedddeeeeeeeeedeee.eeedeeeskkkrksksdeeeee......edeeersrkrrrsepsakklrrr....lkkerrkyeavlekyy.....sq 220 +e++e ++++++e+e+e+e+e ++e+++e+kk+r +k++++++e +e+er+r+r+r+e ++++ ++ l+ + +k+ ++l++ y ++ T027560_3 406 QEKKERERKKKKEREREREKErKKERKKERKKER-KKEKKRRRE*ererrGKERERERQRERKEGKERNFTQLlaswLNYQCNKHLKQLSSPYprfplTH 504 1111111111111111111110111111111111.22222222255444455556667777776555554444555566666666666666662222234 PP CDC45 221 gtsygesvsslmYsLaselgredndlLWlAIv 252 + ++++++ + +Y+ + l r++n ++I+ T027560_3 505 YFTFSKPSVTPVYETLPILLRSSNTKFYYTII 536 56778888888888888888888877777776 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 17.8 0.0021 11 393 463 .. 406 476 .. 395 508 .. 0.53 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0021 GG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.--.......-------------S-SSST CS NARP1 393 keeekeeaknaelseaerkklrkkakkaekkaekeeaekakke.kekkaaekkakkedeeakkededplgek 463 +e++++e k+++ e+er+k rkk +k+e+k+e+++++k+++e + ++++ k++++e ++++ke ++ + ++ T027560_3 406 QEKKERERKKKKEREREREKERKKERKKERKKERKKEKKRRRE*E-RERRGKERERERQRERKEGKERNFTQ 476 344444455555555566666666555555555555553333221.22233344444444555555544444 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 34.3 0.0024 13 114 181 .. 405 470 .. 395 490 .. 0.43 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0024 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS MIP-T3 114 ekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkke.kdrekekererekaserekke 181 ++k+e+++k++ke+e+e+e+ e +ke++++++ke++kekk+ e +++ + kerere+++er++ + T027560_3 405 RQEKKERERKKKKEREREREK---ERKKERKKERKKERKKEKKRRRE*ERERRGKERERERQRERKEGK 470 333333333333333322222...223333333333333333333333333333333333333333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1707 (0.104685); expected 326.1 (0.02) Passed bias filter: 388 (0.0237949); expected 326.1 (0.02) Passed Vit filter: 114 (0.00699129); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.60 # Mc/sec: 5597.69 // Query: T383635_1 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.49 # Mc/sec: 7181.27 // Query: T383635_2 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal Domain annotation for each model (and alignments): >> GPAT_N Glycerol-3-phosphate acyltransferase N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 1.6e-05 0.27 35 56 .. 718 739 .. 709 742 .. 0.84 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.6e-05 GPAT_N 35 eelYqNYknAVlqsGvpnAdei 56 +++NY+nAVlq + +A+++ T383635_2 718 CSMFKNYRNAVLQRENTGAEQV 739 579***********99999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 5964.10 // Query: T383635_3 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.65 # Mc/sec: 5409.17 // Query: T148455_1 [L=1561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.59 # Mc/sec: 7569.08 // Query: T148455_2 [L=1561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.71 # Mc/sec: 6289.80 // Query: T148455_3 [L=1561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 6665.31 // Query: T368132_1 [L=4530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:00.79 # Mc/sec: 16404.51 // Query: T368132_2 [L=4530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 561 (0.0344045); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.32s 00:00:01.89 Elapsed: 00:00:00.77 # Mc/sec: 16830.60 // Query: T368132_3 [L=4529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 426 (0.0261254); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.36s 00:00:01.93 Elapsed: 00:00:00.80 # Mc/sec: 16195.87 // Query: T052740_1 [L=3623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.36s 00:00:01.72 Elapsed: 00:00:00.83 # Mc/sec: 12487.70 // Query: T052740_2 [L=3623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.84 # Mc/sec: 12339.03 // Query: T052740_3 [L=3623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.76 # Mc/sec: 13637.88 // Query: T070157_1 [L=146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.53 # Mc/sec: 788.08 // Query: T070157_2 [L=145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.70 # Mc/sec: 592.60 // Query: T070157_3 [L=145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 85 (0.00521281); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 768.19 // Query: T099529_1 [L=1144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.67 # Mc/sec: 4884.76 // Query: T099529_2 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 5449.88 // Query: T099529_3 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 5542.25 // Query: T281820_1 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0031 17.4 5.8 0.012 15.6 1.0 2.8 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.068 12.8 14.8 0.12 12.0 3.6 2.6 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 1.0 1.4e-06 0.012 2 16 .. 778 792 .. 777 793 .. 0.95 2 ? 3.2 0.3 0.012 96 11 17 .. 809 815 .. 809 816 .. 0.93 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.4e-06 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 C++C + GH+a++C T281820_1 778 SCFKCWKSGHWAKEC 792 6************** PP == domain 2 score: 3.2 bits; conditional E-value: 0.012 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T281820_1 809 HWKSDCP 815 ******9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 3.6 1.4e-05 0.12 1 18 [. 775 792 .. 775 794 .. 0.96 2 ? 5.9 3.5 0.0012 9.8 1 21 [. 798 817 .. 798 819 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.4e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k Hwa++C T281820_1 775 PPGSCFKCWKSGHWAKEC 792 89**************** PP == domain 2 score: 5.9 bits; conditional E-value: 0.0012 ---B-TTT-SSBS-TTT---S CS zf-CCHC_5 1 ppglCpRCkkgkHwardChsk 21 pp Cp C g Hw++dC + T281820_1 798 PPKPCPSCA-GPHWKSDCPTR 817 6777****6.********765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 8400.85 // Query: T281820_2 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.7 0.0 0.00031 20.9 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.0 1.9e-08 0.00031 42 100 .. 902 959 .. 896 960 .. 0.77 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 1.9e-08 EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 42 kaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 a+ ++ +i + + +++ +l+++ f + s+l++p+++ llGrd+L+kl + L T281820_2 902 LASITVVSIDVQAsKSLKTSQLWYELGQHSFMH--SFLVIPTCLASLLGRDILTKLSASL 959 566677777777734444555567888888888..*********************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 7778.93 // Query: T281820_3 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-13 49.5 0.1 3.6e-13 48.9 0.1 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 1.6e-09 38.0 0.0 2.5e-09 37.3 0.0 1.3 1 RNase_H RNase H 2.8e-08 33.4 0.1 4.6e-08 32.7 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.9 0.1 6.6e-17 3.6e-13 464 503 .. 1709 1748 .. 1708 1763 .. 0.89 Alignments for each domain: == domain 1 score: 48.9 bits; conditional E-value: 6.6e-17 HHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHH CS TLV_coat 464 GLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqer 503 GLDlL++e+GGlC L+EeCCFy ++sg+v d+i+k + T281820_3 1709 GLDLLTAEKGGLCIFLNEECCFYLNQSGLVYDNIKKKHTH 1748 9*********************************996555 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.0 4.6e-13 2.5e-09 3 100 .. 1471 1568 .. 1469 1579 .. 0.74 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 4.6e-13 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseq 95 ++++++DGs+++ +++++ag+ ++++ + +++l++ +t +a L+A+++aL a ++ +vniyt SkY+++ i++ h ++ ++++ t+++ T281820_3 1471 HHTWFVDGSSNRPncHSPAKAGYaIVSST-SILEATALSPSTTSRQAKLIALTQALTlA--KGLCVNIYTNSKYALH-ILH-HHAVIQAEENFlTTQG 1563 579******9987678888****666655.333345555899**************977..99**************.555.2444444443335555 PP SBHTT CS RNase_H 96 kpvkn 100 + ++n T281820_3 1564 SSIIN 1568 55655 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.1 8.4e-12 4.6e-08 123 221 .. 1137 1228 .. 1121 1229 .. 0.90 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 8.4e-12 .TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 123 segryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +++ ++++lpqG+ SP f+ ++++ l +l+ +++ Y DD+l++s s ++ q+ + ++l g+ ++ +K ++ s+ + yLG+ T281820_3 1137 QSQQLTWAVLPQGFRDSPHYFSQVLSHDLLSLHPT--TSHFIKYFDDLLLYSPSYKSSQQDTLLLLQHLFLKGYLVSSSKAQIS-----SSLIMYLGI 1227 478899***************99998888888875..7****************999999999*********************.....8*******9 PP E CS RVT_1 221 t 221 + T281820_3 1228 I 1228 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.77 # Mc/sec: 6869.71 // Query: T216195_1 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 4968.31 // Query: T216195_2 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.69 # Mc/sec: 4320.27 // Query: T216195_3 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 485 (0.0297437); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 4198.57 // Query: T227173_1 [L=4432] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4432 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.43s 00:00:02.31 Elapsed: 00:00:00.84 # Mc/sec: 15094.28 // Query: T227173_2 [L=4431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.39s 00:00:02.06 Elapsed: 00:00:00.78 # Mc/sec: 16251.72 // Query: T227173_3 [L=4431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.39s 00:00:02.01 Elapsed: 00:00:00.81 # Mc/sec: 15649.80 // Query: T362525_1 [L=1001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 4545.54 // Query: T362525_2 [L=1001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.71 # Mc/sec: 4033.37 // Query: T362525_3 [L=1001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 4474.52 // Query: T094003_1 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 5309.87 // Query: T094003_2 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5647.83 // Query: T094003_3 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.088 13.1 8.7 0.2 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.2 8 50 .. 690 732 .. 689 739 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094003_3 690 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 732 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 775 (0.0475285); expected 326.1 (0.02) Passed bias filter: 369 (0.0226297); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.75 # Mc/sec: 4668.87 // Query: T315671_1 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0099 15.9 6.2 11 6.2 0.1 3.6 2 MSG Major surface glycoprotein Domain annotation for each model (and alignments): >> MSG Major surface glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.1 0.00065 11 5 37 .. 302 334 .. 298 338 .. 0.91 2 ! 3.9 4.1 0.0035 57 12 12 .. 379 379 .. 330 510 .. 0.72 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00065 MSG 5 ekCielleeCyfleesckntkkkCdklkekCkk 37 + C +++C l + c+ ++ +C l +C++ T315671_1 302 QHCRGNDPHCLLLPTHCRGNDPHCLLLPTHCRG 334 679999*************************87 PP == domain 2 score: 3.9 bits; conditional E-value: 0.0035 MSG 12 e 12 + T315671_1 379 P 379 2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 3015.22 // Query: T315671_2 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 2878.17 // Query: T315671_3 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 3015.22 // Query: T007223_1 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 1953.41 // Query: T007223_2 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.60 # Mc/sec: 2083.64 // Query: T007223_3 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 2078.87 // Query: T259461_1 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.63 # Mc/sec: 2833.58 // Query: T259461_2 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.60 # Mc/sec: 2975.26 // Query: T259461_3 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.66 # Mc/sec: 2704.78 // Query: T264829_1 [L=934] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (934 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 4309.70 // Query: T264829_2 [L=934] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (934 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 5041.54 // Query: T264829_3 [L=934] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (934 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 5453.09 // Query: T316840_1 [L=3851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1065 (0.0653134); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.40s 00:00:01.84 Elapsed: 00:00:00.62 # Mc/sec: 17769.45 // Query: T316840_2 [L=3851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 795 (0.0487551); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.41s 00:00:01.74 Elapsed: 00:00:00.61 # Mc/sec: 18060.75 // Query: T316840_3 [L=3850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 985 (0.0604072); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.43s 00:00:01.84 Elapsed: 00:00:00.62 # Mc/sec: 17764.83 // Query: T016661_1 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8528.85 // Query: T016661_2 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 7718.84 // Query: T016661_3 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 7718.84 // Query: T241199_1 [L=3564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.083 12.9 1.2 0.23 11.5 1.2 1.7 1 Thx 30S ribosomal protein Thx Domain annotation for each model (and alignments): >> Thx 30S ribosomal protein Thx # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 1.2 1.4e-05 0.23 7 22 .. 852 867 .. 849 870 .. 0.91 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.4e-05 TSHHHHHHTT--SSSS CS Thx 7 RtRRGKiWRGtYGKYR 22 RtR+G +WRG Y + R T241199_1 852 RTRKGALWRGSYTRHR 867 9***********9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 18207.14 // Query: T241199_2 [L=3564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.57 # Mc/sec: 17579.31 // Query: T241199_3 [L=3563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 18202.03 // Query: T018828_1 [L=7864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-29 100.8 16.4 6.7e-29 100.8 16.4 2.4 3 CCDC144C CCDC144C protein coiled-coil region 4.1e-16 59.0 1.1 2e-08 33.9 0.4 2.2 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 1.6e-15 57.3 6.5 1.6e-15 57.3 6.5 2.4 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.2 5.9 3 1.6e+04 191 237 .. 157 203 .. 145 254 .. 0.59 2 ! 100.8 16.4 1.2e-32 6.7e-29 1 96 [. 703 798 .. 703 799 .. 0.99 3 ? -3.4 1.3 0.69 3.8e+03 75 107 .. 1168 1200 .. 1155 1214 .. 0.73 Alignments for each domain: == domain 1 score: -6.2 bits; conditional E-value: 3 CCDC144C 191 aqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 + + l ++++e+e+ +++ +kq ++e +se + L + + T018828_1 157 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 44444444555555555555555555555555555555544444433 PP == domain 2 score: 100.8 bits; conditional E-value: 1.2e-32 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018828_1 703 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 798 9*********************************************************************************************95 PP == domain 3 score: -3.4 bits; conditional E-value: 0.69 CCDC144C 75 lnskLekekqnkerletevesyrsrLaaAiqdh 107 + k+ k k e++ te+e y+ aaA++ T018828_1 1168 VDCKFYKMKTAYEEVTTELEEYKEAFAAALKAN 1200 556777888999999999999999999998753 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 4.7e-09 2.5e-05 2 29 .. 2429 2456 .. 2428 2458 .. 0.91 2 ! 33.9 0.4 3.7e-12 2e-08 185 228 .. 2597 2640 .. 2592 2646 .. 0.92 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 4.7e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018828_1 2429 EIAWRQGKRKAEKDEMVSARFFLALSPP 2456 679**********************975 PP == domain 2 score: 33.9 bits; conditional E-value: 3.7e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018828_1 2597 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2640 679**************************************998 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.4 2.9 3 1.6e+04 34 74 .. 151 191 .. 149 196 .. 0.87 2 ? -7.6 6.2 3 1.6e+04 30 87 .. 725 781 .. 710 794 .. 0.56 3 ! 57.3 6.5 2.9e-19 1.6e-15 3 69 .. 1160 1225 .. 1159 1227 .. 0.93 Alignments for each domain: == domain 1 score: -5.4 bits; conditional E-value: 3 DUF3496 34 kqlyleelkvrksLsnklnktnerLaevstkllvekeqnrs 74 ++ y++ l++++ L l++++er + + k ke n++ T018828_1 151 QRKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNT 191 56899*********************999999999987765 PP == domain 2 score: -7.6 bits; conditional E-value: 3 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018828_1 725 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 781 554.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 57.3 bits; conditional E-value: 2.9e-19 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018828_1 1160 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1225 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 568 (0.0348338); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.08u 0.44s 00:00:02.52 Elapsed: 00:00:00.67 # Mc/sec: 33578.46 // Query: T018828_2 [L=7864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-29 102.0 13.6 2.9e-29 102.0 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region ------ inclusion threshold ------ 4.2 7.2 19.2 0.027 14.4 1.1 2.3 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.2 3.5e-05 0.29 96 143 .. 797 842 .. 784 843 .. 0.87 2 ! 102.0 13.6 3.5e-33 2.9e-29 184 304 .. 881 992 .. 870 993 .. 0.94 3 ? -8.0 20.5 2 1.6e+04 121 231 .. 1040 1154 .. 1013 1157 .. 0.78 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.5e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018828_2 797 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 842 689**********************9554.57..89*********9976 PP == domain 2 score: 102.0 bits; conditional E-value: 3.5e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018828_2 881 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 971 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018828_2 972 MNECD-H*KESLFRYEREKAER 992 ****7.55589**********8 PP == domain 3 score: -8.0 bits; conditional E-value: 2 CCDC144C 121 fqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yig 214 + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ +++ T018828_2 1040 VESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQ 1137 44555778888999999999999999999999844458899999999999999888777777889999999999999999977666666666552677 PP CCDC144C 215 kqesleerlsqlqsenl 231 +q ++ +l ql+++ + T018828_2 1138 EQAQYKKQLEQLNKDII 1154 88899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 1.1 3.3e-06 0.027 24 94 .. 883 952 .. 879 953 .. 0.95 2 ? -2.6 11.1 0.56 4.6e+03 9 96 .. 1065 1150 .. 1039 1156 .. 0.85 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.3e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018828_2 883 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 952 68999********************************************************76.9999986 PP == domain 2 score: -2.6 bits; conditional E-value: 0.56 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018828_2 1065 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 1150 55555666678899999**************999999999******************************9999984..467666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 709 (0.0434809); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.93u 0.43s 00:00:02.36 Elapsed: 00:00:00.68 # Mc/sec: 33084.66 // Query: T018828_3 [L=7864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-13 51.2 0.3 9.1e-13 48.1 0.1 2.1 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 6.6e-07 28.6 3.0 9.3e-07 28.1 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region 0.00043 20.5 2.1 0.00052 20.2 0.0 2.0 2 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.062 3.3e+02 39 55 .. 2466 2482 .. 2464 2489 .. 0.88 2 ! 48.1 0.1 1.7e-16 9.1e-13 102 175 .. 2514 2587 .. 2506 2596 .. 0.92 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.062 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 e+k++ fk ftkkmd+ T018828_3 2466 ESKIDGFKCFTKKMDNR 2482 89*************96 PP == domain 2 score: 48.1 bits; conditional E-value: 1.7e-16 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++++ ++e+fa q++kDl+ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018828_3 2514 ELDQAIHFSIDAFHSVSELFASQSRKDLDLAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 2587 7999****************************************************************987654 PP >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 3.0 1.7e-10 9.3e-07 145 185 .. 842 882 .. 842 884 .. 0.97 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 1.7e-10 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018828_3 842 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 882 69*************************************99 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.6 0.66 3.6e+03 2 28 .. 276 302 .. 256 318 .. 0.71 2 ! 20.2 0.0 9.5e-08 0.00052 64 107 .. 1219 1261 .. 1215 1263 .. 0.91 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.66 DUF3496 2 sqmElrikdLeselskmKtsqedsnkt 28 +q+E +i++Le++ +++++ ++ nk+ T018828_3 276 KQLEPTIQSLEMKPKTTRNTPNQINKS 302 466777777777777777766666654 PP == domain 2 score: 20.2 bits; conditional E-value: 9.5e-08 DUF3496 64 kllvekeqnrsllstlttr.pvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018828_3 1219 QLFMEKEQVKYFLSTLPTR*GR-ESPCVENLT-SIGLNRKYIPQM 1261 799***************8864.79*******.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.65 # Mc/sec: 34611.64 // Query: T281909_1 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3003.87 // Query: T281909_2 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 2772.80 // Query: T281909_3 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2877.99 // Query: T111397_1 [L=2864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 14126.58 // Query: T111397_2 [L=2864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14631.10 // Query: T111397_3 [L=2863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14369.40 // Query: T316888_1 [L=1083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-06 25.5 11.7 7.3e-06 25.5 11.7 4.2 4 Collagen Collagen triple helix repeat (20 copies) Domain annotation for each model (and alignments): >> Collagen Collagen triple helix repeat (20 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 11.7 4.5e-10 7.3e-06 2 54 .. 316 368 .. 313 382 .. 0.53 2 ? -4.0 1.0 0.73 1.2e+04 46 50 .. 499 503 .. 494 513 .. 0.39 3 ? -3.9 8.1 0.68 1.1e+04 32 49 .. 701 718 .. 684 722 .. 0.32 4 ? 0.0 0.1 0.041 6.7e+02 43 52 .. 772 781 .. 769 783 .. 0.34 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 4.5e-10 XXXXXXXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXXXXXXXXX CS Collagen 2 ppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGea 54 pG +G+ G +G pG +G++G +G +G +Gp G +G pG aG++G +G + a T316888_1 316 CPGCAGPWGWRGCPGCAGPAGWRGCPGCAGPWGWRGCPGCAGPAGWRGCPWCA 368 44555555555555555555555555555555555555555555555544333 PP == domain 2 score: -4.0 bits; conditional E-value: 0.73 XXXXX CS Collagen 46 GapGe 50 G pG+ T316888_1 499 GVPGP 503 11111 PP == domain 3 score: -3.9 bits; conditional E-value: 0.68 -TTSSXXXXXXXXXXXXX CS Collagen 32 paGekGppGaaGkpGapG 49 +G+ G++ +G+ G +G T316888_1 701 SQGPGGAEWGRGEVGRAG 718 122222222222222222 PP == domain 4 score: 0.0 bits; conditional E-value: 0.041 XXXXXXXXXX CS Collagen 43 GkpGapGekG 52 GkpG G++G T316888_1 772 GKPGLSGRSG 781 1111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1083 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 6454.75 // Query: T316888_2 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 5840.41 // Query: T316888_3 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.4 12.1 2.3 7.8 0.2 4.9 5 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 0.071 1.2e+03 28 35 .. 313 320 .. 313 324 .. 0.88 2 ? 7.8 0.2 0.00014 2.3 28 39 .. 325 336 .. 321 336 .. 0.94 3 ? -0.8 0.0 0.071 1.2e+03 28 35 .. 337 344 .. 337 348 .. 0.88 4 ? 7.8 0.2 0.00014 2.3 28 39 .. 349 360 .. 345 360 .. 0.94 5 ? 4.0 0.2 0.0022 36 28 39 .. 361 372 .. 361 372 .. 0.95 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.071 zf-CCHC_4 28 ErLprfCf 35 ErLpr+C T316888_3 313 ERLPRVCG 320 9******6 PP == domain 2 score: 7.8 bits; conditional E-value: 0.00014 zf-CCHC_4 28 ErLprfCfiCgl 39 ErLpr+C +Cgl T316888_3 325 ERLPRVCGSCGL 336 9*********96 PP == domain 3 score: -0.8 bits; conditional E-value: 0.071 zf-CCHC_4 28 ErLprfCf 35 ErLpr+C T316888_3 337 ERLPRVCG 344 9******6 PP == domain 4 score: 7.8 bits; conditional E-value: 0.00014 zf-CCHC_4 28 ErLprfCfiCgl 39 ErLpr+C +Cgl T316888_3 349 ERLPRVCGSCGL 360 9*********96 PP == domain 5 score: 4.0 bits; conditional E-value: 0.0022 zf-CCHC_4 28 ErLprfCfiCgl 39 ErLp +C +Cgl T316888_3 361 ERLPLVCGSCGL 372 9*********96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 6069.45 // Query: T035462_1 [L=4252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0019 17.7 0.1 0.0033 16.9 0.1 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.1 2e-07 0.0033 1 19 [] 2340 2358 .. 2340 2358 .. 0.98 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 2e-07 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F ++W ELE+I L++i+Q T035462_1 2340 SFTATWIELETIVLRKITQ 2358 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.28s 00:00:01.47 Elapsed: 00:00:00.57 # Mc/sec: 20972.84 // Query: T035462_2 [L=4252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.60 # Mc/sec: 20273.75 // Query: T035462_3 [L=4252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.30s 00:00:01.46 Elapsed: 00:00:00.56 # Mc/sec: 21721.87 // Query: T301995_1 [L=2634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.26s 00:00:01.20 Elapsed: 00:00:00.54 # Mc/sec: 13954.49 // Query: T301995_2 [L=2633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13451.01 // Query: T301995_3 [L=2633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 13215.03 // Query: T085626_1 [L=6857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.64 # Mc/sec: 30651.11 // Query: T085626_2 [L=6856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.33s 00:00:02.04 Elapsed: 00:00:00.61 # Mc/sec: 32153.85 // Query: T085626_3 [L=6856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-11 42.1 0.0 4.7e-11 41.5 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.5 0.0 2.9e-15 4.7e-11 305 348 .. 389 434 .. 374 469 .. 0.81 Alignments for each domain: == domain 1 score: 41.5 bits; conditional E-value: 2.9e-15 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085626_3 389 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 434 59***************************************96331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.20u 0.36s 00:00:02.56 Elapsed: 00:00:00.94 # Mc/sec: 20865.80 // Query: T172338_1 [L=1846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-05 24.1 0.0 5.6e-05 23.2 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 3.5e-09 5.6e-05 5 55 .. 594 645 .. 591 656 .. 0.85 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 3.5e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaL 55 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172338_1 594 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRAS 645 68*******99999******766766.557778999**************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 8001.65 // Query: T172338_2 [L=1846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 8124.76 // Query: T172338_3 [L=1846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 7438.16 // Query: T343314_1 [L=5355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.81 # Mc/sec: 18913.26 // Query: T343314_2 [L=5354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-12 46.4 0.0 5e-12 45.6 0.0 1.3 1 Gag_p30 Gag P30 core shell protein 0.002 18.2 0.0 0.0037 17.3 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 0.0 6.2e-16 5e-12 87 210 .. 2856 2979 .. 2849 2980 .. 0.93 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 6.2e-16 Gag_p30 87 fpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkkl 184 pl+ pdw+ ++++ + kl+ +l gl+ + + n k+ + q ++e+ +af+erl+e ++t ++ e + + fi+q+ +dir+kl T343314_2 2856 VPLDNPDWNSDSSTNEWKEKLFLMCILEGLQRTRTKSLNYFKLSMIDQKPDENHTAFMERLREPLIKHTSLSLDSVEGQLILKDKFITQADPDIRRKL 2953 79******8877766666699999*****************************************************9999***************** PP Gag_p30 185 qrleglqeatlkdlvkeaekvynkre 210 ++ + tl++l++ v++ r+ T343314_2 2954 HKEAIGADSTLENLLRVNTSVFYNRD 2979 *98888899**********9*99986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 4.5e-07 0.0037 4 62 .. 3614 3669 .. 3612 3672 .. 0.87 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 4.5e-07 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarf 62 pge+wq+D+t+++ + +g + l++id+f+++i +++ +e +as+vi+l+ ++v f T343314_2 3614 PGEVWQIDFTHMP--KVKGIQHHLAWIDTFTNCIETFPPHTE-KASEVIKLFFCFVFVF 3669 9************..6666788899*****************.9999999887766555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.67u 0.37s 00:00:02.04 Elapsed: 00:00:00.74 # Mc/sec: 20698.49 // Query: T343314_3 [L=5354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.38s 00:00:02.00 Elapsed: 00:00:00.73 # Mc/sec: 20982.03 // Query: T103450_1 [L=1085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 5445.61 // Query: T103450_2 [L=1084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 5001.84 // Query: T103450_3 [L=1084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4770.98 // Query: T302120_1 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1292 (0.0792346); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 2449.34 // Query: T302120_2 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1565 (0.0959769); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.32s 00:00:01.75 Elapsed: 00:00:00.84 # Mc/sec: 2128.59 // Query: T302120_3 [L=625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1517 (0.0930332); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.49s 00:00:02.04 Elapsed: 00:00:00.80 # Mc/sec: 2235.02 // Query: T057283_1 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 26 (0.00159451); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 2673.40 // Query: T057283_2 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 2628.08 // Query: T057283_3 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-09 36.8 0.0 5.2e-09 36.2 0.0 1.2 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.5e-06 26.5 0.2 3.5e-06 26.0 0.2 1.1 1 Transposase_22 L1 transposable element 3.8e-05 23.4 0.6 6.1e-05 22.7 0.2 1.6 2 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.0 9.5e-13 5.2e-09 1 91 [. 312 508 .. 312 518 .. 0.77 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 9.5e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva l++ + + + T057283_3 312 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAFLVSDKTDFKptkikrdkeghyimvkg 403 699****....7778899*******************99988877776668855566777778888888888888855566778888888888888 PP .....................................EEEEEE-SS.................................................. CS .....................................xxxxxxxxx.................................................. RF Exo_endo_phos 78 .....................................vivlGDfNa.................................................. 86 i++GDfN+ T057283_3 404 siqqeeltilniyapntgaprfikqvlsdlqrdldshTIIMGDFNTplstldrstrqkvnkdtqelnsalhqaylidiyrtlhpkstehtffsaph 499 8888899999999999999999999999999999999*********99966666666666666666666666666655555555555555555555 PP ....-BEEE CS ....xxxxx RF Exo_endo_phos 87 ....rlDri 91 +D+i T057283_3 500 htysKIDHI 508 555555665 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 0.2 6.5e-10 3.5e-06 337 368 .] 244 277 .. 241 277 .. 0.95 Alignments for each domain: == domain 1 score: 26.0 bits; conditional E-value: 6.5e-10 HHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 337 lrdylstrPalkrllke..knerkdryqaleqar 368 lrd+ +trPalk+llke ++er++ryq l++++ T057283_3 244 LRDFFTTRPALKELLKEalNMERHNRYQLLQNHA 277 89******************************96 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 1.6 8.9e+03 59 84 .. 326 351 .. 324 354 .. 0.73 2 ! 22.7 0.2 1.1e-08 6.1e-05 2 81 .. 411 493 .. 410 511 .. 0.74 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 1.6 Exo_endo_phos_2 59 eeLidfleehslsllnllkegptfes 84 + L++++++++ s++ +++++t+++ T057283_3 326 HRLANWIKSQDPSVCCIQETHLTCRD 351 67899999998887766666688865 PP == domain 2 score: 22.7 bits; conditional E-value: 1.1e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.pt 81 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ l + ++k++ t T057283_3 411 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQAYLIDIyrtLHPKSTeHT 493 7999***9999.777777778888888876.89*************99888879************9999844444222322244 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 251 (0.0153931); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 2584.28 // Query: T053004_1 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 4599.33 // Query: T053004_2 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 4817.27 // Query: T053004_3 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 4977.84 // Query: T229026_1 [L=6892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-09 38.0 0.0 1.5e-09 37.4 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.4 0.0 9.5e-14 1.5e-09 112 210 .] 71 205 .. 58 205 .. 0.94 Alignments for each domain: == domain 1 score: 37.4 bits; conditional E-value: 9.5e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke.......................................snseg.evvvvfvlYr 171 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ ++ +g + + +++Y T229026_1 71 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYC 169 89********************.9***********************************************************75645************ PP GAIN 172 nLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229026_1 170 TPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 205 ****9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.19u 0.50s 00:00:02.69 Elapsed: 00:00:00.96 # Mc/sec: 20538.38 // Query: T229026_2 [L=6891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.48s 00:00:02.70 Elapsed: 00:00:00.84 # Mc/sec: 23469.02 // Query: T229026_3 [L=6891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.38s 00:00:02.68 Elapsed: 00:00:00.97 # Mc/sec: 20323.69 // Query: T129745_1 [L=7044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.43s 00:00:02.43 Elapsed: 00:00:00.79 # Mc/sec: 25508.46 // Query: T129745_2 [L=7044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.48s 00:00:02.61 Elapsed: 00:00:00.85 # Mc/sec: 23707.87 // Query: T129745_3 [L=7043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.42s 00:00:02.36 Elapsed: 00:00:00.83 # Mc/sec: 24275.69 // Query: T022850_1 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0019 18.7 0.1 2.4 8.7 0.1 2.6 2 Ig_3 Immunoglobulin domain ------ inclusion threshold ------ 0.017 15.1 0.0 0.17 11.8 0.0 2.2 2 I-set Immunoglobulin I-set domain 0.034 14.2 3.4 0.087 12.8 0.0 2.5 3 V-set Immunoglobulin V-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.1 0.0 0.0014 7.6 52 74 .. 84 106 .. 57 110 .. 0.83 2 ! 8.7 0.1 0.00045 2.4 18 42 .. 233 260 .. 218 302 .. 0.71 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0014 SEEEETTEEEESS--GGG-EEEE CS Ig_3 52 ssegssssLtisnvtksdsGtYt 74 ++ + ssL+i+n+ ++dsG+Y T022850_1 84 VHVPNISSLRIENLAPEDSGQYF 106 567889****************5 PP == domain 2 score: 8.7 bits; conditional E-value: 0.00045 -EEE----EEES--.EEEEEE..-.... CS Ig_3 18 svtLtCeaegnppp.titWykngkk..l 42 ++tL+C++ g + ++tW +g l T022850_1 233 NITLECRVPGATEDlNMTWESKGLLgeL 260 89******9999999******9996532 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 3.2e-05 0.17 50 80 .. 83 114 .. 60 123 .. 0.82 2 ? 0.2 0.0 0.13 7.1e+02 18 38 .. 234 255 .. 223 263 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 3.2e-05 EEET.TEEEEEESSB-GGGGEEEEEEEEETSE CS I-set 50 tvee.aeytLtIsnvevsDeGkYtckatnsag 80 +v ++++L+I+n ++D+G+Y ++t g T022850_1 83 RVHVpNISSLRIENLAPEDSGQYFAVITSTKG 114 33334799***************999987766 PP == domain 2 score: 0.2 bits; conditional E-value: 0.13 EEEEEEEECS.SS-EEEEEETT CS I-set 18 velectveGe.pepsvsWakdg 38 ++lec+v G ++++ +W ++g T022850_1 234 ITLECRVPGAtEDLNMTWESKG 255 789*****987999****8875 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 1.6e-05 0.087 61 101 .. 83 119 .. 46 125 .. 0.68 2 ? -3.2 0.0 1.6 8.6e+03 14 33 .. 234 251 .. 233 255 .. 0.81 3 ? -1.0 2.7 0.31 1.7e+03 33 66 .. 510 543 .. 509 548 .. 0.78 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.6e-05 TEEEEEETTTTEEEEEESSESGGG-EEEEEEE.ESSSEEEEE CS V-set 61 rfslrgdpsrsdfsLtiqnlqlsDsGtYfCav.vssgegvfg 101 r+ ++ sL+i+nl ++DsG Yf + +++geg f+ T022850_1 83 RVHVPN-----ISSLRIENLAPEDSGQYFAVItSTKGEGIFQ 119 555554.....88****************9986666665554 PP == domain 2 score: -3.2 bits; conditional E-value: 1.6 EEEEEEESSSSCCTCSEEEE CS V-set 14 vtLsCtlssseseeslsiyW 33 +tL C ++ +e l ++W T022850_1 234 ITLECRVPGA--TEDLNMTW 251 7999*99987..68888888 PP == domain 3 score: -1.0 bits; conditional E-value: 0.31 EEEEETTSCEEEEEEEETTTEEEEESTTTEEEEE CS V-set 33 Wyrqppgkepeelilyysnsskegkkkgrfslrg 66 W +++++p++ ++++++++++k+k++ ++++ T022850_1 510 WGSVRCDQQPTFPQYQRQQKKNKKKQKKKTKTNK 543 6667788889999999999888888888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 998 (0.0612045); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 3294.57 // Query: T022850_2 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 3294.57 // Query: T022850_3 [L=713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1106 (0.0678278); expected 326.1 (0.02) Passed bias filter: 618 (0.0379002); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 3187.14 // Query: T100135_1 [L=3678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.84 # Mc/sec: 12526.35 // Query: T100135_2 [L=3678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 11.4 4.0 0.35 10.4 4.0 1.5 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 4.0 2.2e-05 0.35 9 27 .] 825 843 .. 823 843 .. 0.96 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 2.2e-05 DUF3704 9 GYMPksgIAGSSdSimsnF 27 GY P sgI+GS +++m nF T100135_2 825 GYIPQSGITGSYSNSMFNF 843 9***************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.70 # Mc/sec: 15031.62 // Query: T100135_3 [L=3677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-08 31.7 0.0 1.5e-07 31.1 0.0 1.2 1 RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-ter Domain annotation for each model (and alignments): >> RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.0 8.9e-12 1.5e-07 233 279 .. 2431 2478 .. 2430 2481 .. 0.96 Alignments for each domain: == domain 1 score: 31.1 bits; conditional E-value: 8.9e-12 RIBIOP_C 233 MFfnpedvawFkpvelrTksGrrGhIkeslgt.hGyfkatFddklkqs 279 MF+++++va F+++ ++T+s +r +Ik++l +G+f a F++kl +s T100135_3 2431 MFNSALEVAIFEGAVIQTVSEIRQQIKKALRApEGAFQASFEHKLLMS 2478 *******************************99************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.73 # Mc/sec: 14409.96 // Query: T164676_1 [L=2379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 10158.08 // Query: T164676_2 [L=2378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9319.25 // Query: T164676_3 [L=2378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.64 # Mc/sec: 10629.77 // Query: T337161_1 [L=5865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.35s 00:00:02.15 Elapsed: 00:00:00.78 # Mc/sec: 21511.24 // Query: T337161_2 [L=5864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.34s 00:00:02.13 Elapsed: 00:00:00.77 # Mc/sec: 21786.89 // Query: T337161_3 [L=5864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.10u 0.45s 00:00:03.55 Elapsed: 00:00:01.00 # Mc/sec: 16775.91 // Query: T103744_1 [L=3335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.73 # Mc/sec: 13069.68 // Query: T103744_2 [L=3335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.8e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.029 14.5 0.0 0.055 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.058 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.059 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.68 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.73 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 2.7 8.1 7.4 4.8 7.4 6.6 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.8e-142 1 368 [] 2890 3225 .. 2890 3225 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103744_2 2890 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 2975 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103744_2 2976 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3032 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103744_2 3033 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3125 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103744_2 3126 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3218 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103744_2 3219 QLLQNHA 3225 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.7e-05 0.055 1 72 [. 3260 3329 .. 3260 3334 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.7e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103744_2 3260 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3329 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2914 3037 .. 2880 3044 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103744_2 2914 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3007 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103744_2 3008 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3037 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.2e-05 0.11 3 94 .. 2955 3044 .. 2953 3046 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.2e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103744_2 2955 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3044 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00033 0.68 3 95 .. 2941 3042 .. 2940 3044 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00033 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103744_2 2941 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3035 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103744_2 3036 QEIWDYV 3042 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.73 30 124 .. 2943 3037 .. 2939 3044 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103744_2 2943 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3037 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 2.1 2.7 5.4e+03 77 96 .. 965 979 .. 951 982 .. 0.43 2 ? 15.4 2.1 6.9e-06 0.014 44 96 .. 2948 3000 .. 2941 3006 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103744_2 965 SKKKKRKKERKKR-----KK 979 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 6.9e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103744_2 2948 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3000 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 6.6 0.0024 4.8 28 89 .. 2973 3032 .. 2953 3040 .. 0.71 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0024 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103744_2 2973 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3032 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.75u 0.38s 00:00:02.13 Elapsed: 00:00:00.93 # Mc/sec: 10259.00 // Query: T103744_3 [L=3334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 12550.01 // Query: T073192_1 [L=2259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.24s 00:00:01.16 Elapsed: 00:00:00.51 # Mc/sec: 12671.79 // Query: T073192_2 [L=2259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.64 # Mc/sec: 10097.84 // Query: T073192_3 [L=2259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.67 # Mc/sec: 9645.69 // Query: T156244_1 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 5587.56 // Query: T156244_2 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 6061.08 // Query: T156244_3 [L=1249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 5104.54 // Query: T367592_1 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.60 # Mc/sec: 5702.59 // Query: T367592_2 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6336.21 // Query: T367592_3 [L=1196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 5184.17 // Query: T156677_1 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 8452.86 // Query: T156677_2 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 8074.37 // Query: T156677_3 [L=1890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 8863.88 // Query: T172523_1 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 3531.48 // Query: T172523_2 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 2991.95 // Query: T172523_3 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.65 # Mc/sec: 3309.76 // Query: T008727_1 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4511.31 // Query: T008727_2 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.61 9.8 4.3 2.6 7.8 0.3 2.6 2 Potassium_chann Potassium voltage-gated channel Domain annotation for each model (and alignments): >> Potassium_chann Potassium voltage-gated channel # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 0.3 0.00016 2.6 7 20 .. 63 76 .. 62 79 .. 0.93 2 ? 2.6 0.4 0.0065 1.1e+02 15 23 .. 218 226 .. 217 230 .. 0.85 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00016 Potassium_chann 7 VSSykGRKsGNKss 20 VSSy RK+G +s+ T008727_2 63 VSSYTERKGGSRSP 76 9**********998 PP == domain 2 score: 2.6 bits; conditional E-value: 0.0065 Potassium_chann 15 sGNKsssKa 23 sGNKsss a T008727_2 218 SGNKSSSSA 226 9*****976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 458 (0.0280878); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 4581.80 // Query: T008727_3 [L=1024] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1024 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 5326.35 // Query: T294834_1 [L=1748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.70 # Mc/sec: 7143.90 // Query: T294834_2 [L=1747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-22 79.0 0.0 7.6e-22 77.9 0.0 1.5 2 RNase_H RNase H 8.2e-20 71.1 0.0 2.1e-19 69.8 0.0 1.8 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 1e-07 31.9 0.1 2.6e-07 30.7 0.1 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.9 0.0 1.4e-25 7.6e-22 5 142 .. 350 491 .. 347 492 .. 0.84 2 ? -4.1 0.0 2.7 1.5e+04 4 31 .. 841 866 .. 839 879 .. 0.76 Alignments for each domain: == domain 1 score: 77.9 bits; conditional E-value: 1.4e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk 99 +Y+DGs++ n +ge++ag+ v+ + + +pl++ +++++aEL+A++ aL+ ++++vniy DS+Y++ +++ vh++ k++a +s +k++k T294834_2 350 ELYVDGSSFINpQGERCAGCaVVTLD-DVIEDKPLPHGTSAQKAELIALTRALElR--EGKTVNIYPDSRYAFLTLQ--VHGAlyKEKAL-LNSGGKDIK 443 68*********99999****777766.3466699*******************955..9**************9555..56662144444.5888899*9 PP T.HHHHHHHHHCHCSSEEEEEE-SCC..SSS...CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgH..aGd...pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv ++h++gH a ++gN + D A++aa T294834_2 444 YqQEILQLLEAVWKPQKVAVMHCRGHlqA-StsvSQGNSRTDTEAQKAA 491 889***********************752.246789**********997 PP == domain 2 score: -4.1 bits; conditional E-value: 2.7 EEEEEEEEEECTTTEEEEEEEECTT..E CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegar 31 v++ D+++ ns++ g g++ ++ + T294834_2 841 VTLKFDACATINSNQQGLGCGSLQK--H 866 66777999999*9999999966434..3 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.8 0.0 4e-23 2.1e-19 1 222 [] 64 236 .. 64 236 .. 0.87 Alignments for each domain: == domain 1 score: 69.8 bits; conditional E-value: 4e-23 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T294834_2 64 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTAPNPYTLLGL------------LLAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 138 69*********7....7***********.........99999999999666............56899******************************66 PP .......................TEE..EEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHH...HHHHTT CS RVT_1 101 linliksflstrsfsvrvngeesegr..yekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleavee...wlkesg 195 s+ y++++lpqG+++SP++f ++ + l+++ + g+ ll+Y+DD+l+ + + + + + + +l+++g T294834_2 139 ---------------------GSGVTt*YTWTRLPQGFKNSPTIFGEALARDLQKFPAKDLGCILLQYVDDLLLGDSMADG---CAKGTDAll*HLEDCG 214 .....................34555688*********************9999999999************997666444...444444422558**** PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ +++v+yLG+t+ T294834_2 215 YKVSKKKAQIC-----RQQVRYLGFTI 236 ***********.....9********97 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.1 4.7e-11 2.6e-07 1 36 [. 557 592 .. 557 593 .. 0.98 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 4.7e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCk 36 H++tHlG++ l++ll+r++++ ++ +++++V+++C+ T294834_2 557 HETTHLGQESLEKLLSRYFYISHLPALAKTVARRCT 592 9**********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 7243.29 // Query: T294834_3 [L=1747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.77 # Mc/sec: 6490.74 // Query: T280753_1 [L=5900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.56 # Mc/sec: 30140.89 // Query: T280753_2 [L=5900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.28s 00:00:01.53 Elapsed: 00:00:00.52 # Mc/sec: 32459.42 // Query: T280753_3 [L=5900] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5900 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.26s 00:00:01.49 Elapsed: 00:00:00.54 # Mc/sec: 31257.22 // Query: T186265_1 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 4124.36 // Query: T186265_2 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 4212.12 // Query: T186265_3 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.21s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 4124.36 // Query: T006628_1 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 4720.37 // Query: T006628_2 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 4820.80 // Query: T006628_3 [L=791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4618.20 // Query: T165132_1 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 2357.54 // Query: T165132_2 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 25 (0.00153318); expected 326.1 (0.02) Passed bias filter: 11 (0.000674598); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.46 # Mc/sec: 2767.54 // Query: T165132_3 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-07 29.5 28.5 1.2 8.9 0.1 8.9 11 DUF2726 Protein of unknown function (DUF2726) ------ inclusion threshold ------ 0.013 14.4 0.0 17 4.2 0.0 3.9 5 DUF4831 Domain of unknown function (DUF4831) 0.14 12.0 44.2 3.8 7.5 0.1 13.6 15 PDE8 PDE8 phosphodiesterase Domain annotation for each model (and alignments): >> DUF2726 Protein of unknown function (DUF2726) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.1 0.1 0.0034 18 49 79 .. 9 39 .. 6 41 .. 0.89 2 ? -0.8 0.0 0.22 1.2e+03 61 80 .. 41 60 .. 40 63 .. 0.87 3 ! 6.6 0.1 0.0011 6.1 47 79 .. 70 102 .. 57 106 .. 0.89 4 ! 4.7 0.1 0.0044 24 47 78 .. 91 122 .. 89 125 .. 0.88 5 ? 1.6 0.1 0.04 2.2e+02 60 78 .. 104 122 .. 101 136 .. 0.59 6 ! 8.2 0.2 0.00038 2.1 46 80 .. 143 177 .. 129 180 .. 0.86 7 ! 6.8 0.2 0.001 5.4 45 76 .. 196 227 .. 174 231 .. 0.79 8 ! 7.8 0.3 0.0005 2.7 46 80 .. 218 252 .. 210 255 .. 0.90 9 ? 1.1 0.1 0.06 3.3e+02 48 79 .. 252 283 .. 249 286 .. 0.83 10 ? 2.5 0.2 0.022 1.2e+02 46 79 .. 271 305 .. 258 308 .. 0.80 11 ! 8.9 0.1 0.00023 1.2 45 79 .. 314 348 .. 302 351 .. 0.85 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0034 DUF2726 49 ealnrisakrvDfllcdkadlkpvavIeldg 79 ++l++i+ + D l+c ++d++++ +Ie d+ T165132_3 9 DVLWCIEVSDEDVLWCIESDENVLWCIESDE 39 67889999999*****************987 PP == domain 2 score: -0.8 bits; conditional E-value: 0.22 DUF2726 61 fllcdkadlkpvavIeldga 80 l+c ++d++++ +Ie ++ T165132_3 41 VLWCIESDEDVLWCIEVSDE 60 599*99**********8765 PP == domain 3 score: 6.6 bits; conditional E-value: 0.0011 DUF2726 47 sqealnrisakrvDfllcdkadlkpvavIeldg 79 ++ +l++i+++ D l+c ++d++++ +Ie + T165132_3 70 DEGVLWCIEESDEDVLWCIESDEDVLWCIEVSD 102 5667899***********************876 PP == domain 4 score: 4.7 bits; conditional E-value: 0.0044 DUF2726 47 sqealnrisakrvDfllcdkadlkpvavIeld 78 ++++l++i+ + D l+c ++d++++ +Ie + T165132_3 91 DEDVLWCIEVSDEDVLWCIESDEDVLWCIESE 122 6778999999999****************965 PP == domain 5 score: 1.6 bits; conditional E-value: 0.04 DUF2726 60 DfllcdkadlkpvavIeld 78 D l+c ++d++++ +Ie + T165132_3 104 DVLWCIESDEDVLWCIESE 122 5556655666666655533 PP == domain 6 score: 8.2 bits; conditional E-value: 0.00038 DUF2726 46 qsqealnrisakrvDfllcdkadlkpvavIeldga 80 +++++l++i+++ D l+c ++d++++ +Ie ++ T165132_3 143 SDEDVLWCIEESDEDVLWCIESDEDVLWCIEVSDE 177 678899*************************8765 PP == domain 7 score: 6.8 bits; conditional E-value: 0.001 DUF2726 45 kqsqealnrisakrvDfllcdkadlkpvavIe 76 ++++++l++i+++ D l+c ++d++++ +Ie T165132_3 196 ESDEDVLWCIEESDEDVLWCIESDEDVLWCIE 227 45677788888888888888888888888887 PP == domain 8 score: 7.8 bits; conditional E-value: 0.0005 DUF2726 46 qsqealnrisakrvDfllcdkadlkpvavIeldga 80 +++++l++i+++ D l+c ++d++++ +Ie ++ T165132_3 218 SDEDVLWCIEESDEDVLWCIESDEDVLWCIEVSDE 252 577899*************************8775 PP == domain 9 score: 1.1 bits; conditional E-value: 0.06 DUF2726 48 qealnrisakrvDfllcdkadlkpvavIeldg 79 +++l++i+ + l+c ++d++++ +Ie + T165132_3 252 ENVLWCIEVSDEGVLWCIESDEDVLWCIEVSD 283 67777888888889**************9876 PP == domain 10 score: 2.5 bits; conditional E-value: 0.022 DUF2726 46 qsqealnrisakrvDfllcdk.adlkpvavIeldg 79 +++++l++i+ + D l+c++ +d++++ +Ie + T165132_3 271 SDEDVLWCIEVSDEDVLWCTEvSDEDVLWCIEVSD 305 56678888889999999998646889999998765 PP == domain 11 score: 8.9 bits; conditional E-value: 0.00023 DUF2726 45 kqsqealnrisakrvDfllcdkadlkpvavIeldg 79 ++++++l++i+++ D l+c ++d++++ +Ie d+ T165132_3 314 ESDEDVLWCIEESDEDVLWCIESDEDVLWCIESDE 348 6788999************************9886 PP >> DUF4831 Domain of unknown function (DUF4831) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.0031 17 61 96 .. 46 81 .. 25 93 .. 0.85 2 ? -0.6 0.0 0.093 5e+02 60 96 .. 130 166 .. 125 188 .. 0.83 3 ? -1.7 0.0 0.2 1.1e+03 62 96 .. 164 198 .. 155 211 .. 0.73 4 ? 3.8 0.0 0.0043 23 61 96 .. 238 273 .. 217 276 .. 0.90 5 ? -1.1 0.0 0.13 7e+02 60 96 .. 291 327 .. 286 333 .. 0.88 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0031 DUF4831 61 vpDeekaYlvklkkksvaplvsltedGillaintea 96 De+ + +++++++v ++++++G+l +i+ + T165132_3 46 ESDEDVLWCIEVSDENVLWCIEVSDEGVLWCIEESD 81 579999*************************98765 PP == domain 2 score: -0.6 bits; conditional E-value: 0.093 DUF4831 60 gvpDeekaYlvklkkksvaplvsltedGillaintea 96 v De+ + +++++++v ++ +++ +l +i++++ T165132_3 130 EVSDEDVLWCIEVSDEDVLWCIEESDEDVLWCIESDE 166 5778888888888888888888888888888887665 PP == domain 3 score: -1.7 bits; conditional E-value: 0.2 DUF4831 62 pDeekaYlvklkkksvaplvsltedGillaintea 96 De+ + +++++++v ++ +++ +l +i+ + T165132_3 164 SDEDVLWCIEVSDENVLWCIEESDEDVLWCIEESD 198 57777777777777777777777777777776554 PP == domain 4 score: 3.8 bits; conditional E-value: 0.0043 DUF4831 61 vpDeekaYlvklkkksvaplvsltedGillaintea 96 De+ + +++++++v ++++++G+l +i++++ T165132_3 238 ESDEDVLWCIEVSDENVLWCIEVSDEGVLWCIESDE 273 579999**************************9875 PP == domain 5 score: -1.1 bits; conditional E-value: 0.13 DUF4831 60 gvpDeekaYlvklkkksvaplvsltedGillaintea 96 v De+ + +++++++v ++ +++ +l +i+ + T165132_3 291 EVSDEDVLWCIEVSDEDVLWCIEESDEDVLWCIEESD 327 58899999*********99999999999999998765 PP >> PDE8 PDE8 phosphodiesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.1 0.0035 19 7 22 .. 14 29 .. 12 32 .. 0.92 2 ? 0.5 0.0 0.11 5.8e+02 10 22 .. 37 49 .. 34 51 .. 0.90 3 ? 0.0 0.0 0.15 7.9e+02 7 21 .. 55 70 .. 54 72 .. 0.79 4 ? 3.8 0.2 0.0099 54 7 22 .. 66 82 .. 64 93 .. 0.77 5 ? 5.1 0.1 0.0038 21 7 22 .. 98 113 .. 96 123 .. 0.93 6 ? 1.6 0.2 0.047 2.6e+02 7 21 .. 140 155 .. 128 159 .. 0.67 7 ? 0.8 0.1 0.081 4.4e+02 10 22 .. 154 166 .. 148 168 .. 0.86 8 ? 1.6 0.0 0.046 2.5e+02 7 22 .. 172 188 .. 170 191 .. 0.81 9 ? 0.8 0.1 0.082 4.5e+02 10 22 .. 208 220 .. 202 222 .. 0.86 10 ? 0.6 0.2 0.099 5.4e+02 10 22 .. 229 241 .. 225 243 .. 0.85 11 ? 7.5 0.1 0.00069 3.8 7 22 .. 258 273 .. 255 275 .. 0.92 12 ? 1.0 0.1 0.074 4e+02 7 21 .. 279 294 .. 277 297 .. 0.81 13 ? 1.1 0.1 0.065 3.5e+02 7 22 .. 301 317 .. 299 319 .. 0.81 14 ? 1.4 0.2 0.053 2.9e+02 10 22 .. 326 338 .. 322 350 .. 0.63 15 ? -2.3 0.0 0.8 4.3e+03 7 17 .. 362 372 .. 361 374 .. 0.87 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0035 PDE8 7 iHvSqSgViYcrdSde 22 i vS+ V++c +Sde T165132_3 14 IEVSDEDVLWCIESDE 29 89*************9 PP == domain 2 score: 0.5 bits; conditional E-value: 0.11 PDE8 10 SqSgViYcrdSde 22 S+ V++c +Sde T165132_3 37 SDENVLWCIESDE 49 8899********8 PP == domain 3 score: 0.0 bits; conditional E-value: 0.15 PDE8 7 iHvSqSgViYcrd.Sd 21 i vS+ V++c + Sd T165132_3 55 IEVSDENVLWCIEvSD 70 89********987344 PP == domain 4 score: 3.8 bits; conditional E-value: 0.0099 PDE8 7 iHvSqSgViYc.rdSde 22 i vS+ gV++c +Sde T165132_3 66 IEVSDEGVLWCiEESDE 82 78999999997345666 PP == domain 5 score: 5.1 bits; conditional E-value: 0.0038 PDE8 7 iHvSqSgViYcrdSde 22 i vS+ V++c +Sde T165132_3 98 IEVSDEDVLWCIESDE 113 89*************8 PP == domain 6 score: 1.6 bits; conditional E-value: 0.047 PDE8 7 iHvSqSgViYc.rdSd 21 i vS+ V++c +Sd T165132_3 140 IEVSDEDVLWCiEESD 155 6677777777624455 PP == domain 7 score: 0.8 bits; conditional E-value: 0.081 PDE8 10 SqSgViYcrdSde 22 S+ V++c +Sde T165132_3 154 SDEDVLWCIESDE 166 8999********8 PP == domain 8 score: 1.6 bits; conditional E-value: 0.046 PDE8 7 iHvSqSgViYc.rdSde 22 i vS+ V++c +Sde T165132_3 172 IEVSDENVLWCiEESDE 188 89********8356776 PP == domain 9 score: 0.8 bits; conditional E-value: 0.082 PDE8 10 SqSgViYcrdSde 22 S+ V++c +Sde T165132_3 208 SDEDVLWCIESDE 220 8999********8 PP == domain 10 score: 0.6 bits; conditional E-value: 0.099 PDE8 10 SqSgViYcrdSde 22 S+ V++c +Sde T165132_3 229 SDEDVLWCIESDE 241 8999********8 PP == domain 11 score: 7.5 bits; conditional E-value: 0.00069 PDE8 7 iHvSqSgViYcrdSde 22 i vS+ gV++c +Sde T165132_3 258 IEVSDEGVLWCIESDE 273 89*************9 PP == domain 12 score: 1.0 bits; conditional E-value: 0.074 PDE8 7 iHvSqSgViYcrd.Sd 21 i vS+ V++c + Sd T165132_3 279 IEVSDEDVLWCTEvSD 294 89*********98344 PP == domain 13 score: 1.1 bits; conditional E-value: 0.065 PDE8 7 iHvSqSgViYc.rdSde 22 i vS+ V++c +Sde T165132_3 301 IEVSDEDVLWCiEESDE 317 89********8356776 PP == domain 14 score: 1.4 bits; conditional E-value: 0.053 PDE8 10 SqSgViYcrdSde 22 S+ V++c +Sde T165132_3 326 SDEDVLWCIESDE 338 5566666666665 PP == domain 15 score: -2.3 bits; conditional E-value: 0.8 PDE8 7 iHvSqSgViYc 17 i vS+ V++c T165132_3 362 IEVSDEDVLWC 372 88******999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 2402.02 // Query: T096017_1 [L=16273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.23u 0.44s 00:00:03.67 Elapsed: 00:00:00.77 # Mc/sec: 60460.11 // Query: T096017_2 [L=16273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.66u 0.50s 00:00:04.16 Elapsed: 00:00:00.82 # Mc/sec: 56773.52 // Query: T096017_3 [L=16272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.05u 0.46s 00:00:03.51 Elapsed: 00:00:00.74 # Mc/sec: 62907.33 // Query: T234776_1 [L=2490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.55 # Mc/sec: 12951.76 // Query: T234776_2 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.62 # Mc/sec: 11484.85 // Query: T234776_3 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 11673.12 // Query: T079591_1 [L=2384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12630.03 // Query: T079591_2 [L=2383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.55 # Mc/sec: 12395.20 // Query: T079591_3 [L=2383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.3 7.0 6.1 11 5.9 6.1 1.4 1 DUF982 Protein of unknown function (DUF982) Domain annotation for each model (and alignments): >> DUF982 Protein of unknown function (DUF982) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 6.1 0.0007 11 34 69 .. 1460 1495 .. 1456 1497 .. 0.92 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0007 -SHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHH CS DUF982 34 rgeayeaAlkaCrdAldgdvpveeAReaFiaAaeea 69 +g+a +A++aC ++++++++ +A+ ++ aAa +a T079591_3 1460 HGPAAAEACRACSLSHADRRAPRAACSTLWAAAPRA 1495 79******************************9776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12624.74 // Query: T331401_1 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 14901.86 // Query: T331401_2 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 14144.14 // Query: T331401_3 [L=2916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.52 # Mc/sec: 16042.65 // Query: T226938_1 [L=8743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.42u 0.45s 00:00:02.87 Elapsed: 00:00:00.90 # Mc/sec: 27791.37 // Query: T226938_2 [L=8743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.54u 0.45s 00:00:02.99 Elapsed: 00:00:00.90 # Mc/sec: 27791.37 // Query: T226938_3 [L=8743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.35s 00:00:02.47 Elapsed: 00:00:00.89 # Mc/sec: 28103.64 // Query: T052799_1 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 4427.01 // Query: T052799_2 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.44 11.0 3.1 0.75 10.3 0.1 2.5 2 PSI_PsaJ Photosystem I reaction centre subunit IX / PsaJ Domain annotation for each model (and alignments): >> PSI_PsaJ Photosystem I reaction centre subunit IX / PsaJ # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.7 0.082 1.3e+03 8 20 .. 444 456 .. 444 461 .. 0.91 2 ? 10.3 0.1 4.6e-05 0.75 14 34 .. 552 572 .. 551 574 .. 0.84 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.082 PSI_PsaJ 8 LStAPVlatlwls 20 LS++P +a lwl T052799_2 444 LSASPLPALLWLH 456 8**********96 PP == domain 2 score: 10.3 bits; conditional E-value: 4.6e-05 PSI_PsaJ 14 latlwlsftAgllIeiNrfFP 34 l + w+ A +I++Nr+FP T052799_2 552 LKVSWVLMRAYSVIIFNRCFP 572 556788899999********* PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 4281.87 // Query: T052799_3 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 4281.87 // Query: T227040_1 [L=1712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 584 (0.035815); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 7899.58 // Query: T227040_2 [L=1711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 607 (0.0372256); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 7894.97 // Query: T227040_3 [L=1711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 670 (0.0410892); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7198.35 // Query: T062884_1 [L=4244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1823 (0.111799); expected 326.1 (0.02) Passed bias filter: 505 (0.0309702); expected 326.1 (0.02) Passed Vit filter: 251 (0.0153931); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.32u 0.45s 00:00:04.77 Elapsed: 00:00:01.18 # Mc/sec: 10289.29 // Query: T062884_2 [L=4244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1170 (0.0717527); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 102 (0.00625537); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.81u 0.52s 00:00:03.33 Elapsed: 00:00:00.99 # Mc/sec: 12264.00 // Query: T062884_3 [L=4244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1963 (0.120385); expected 326.1 (0.02) Passed bias filter: 373 (0.022875); expected 326.1 (0.02) Passed Vit filter: 264 (0.0161904); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.52u 0.47s 00:00:03.99 Elapsed: 00:00:00.91 # Mc/sec: 13342.16 // Query: T036557_1 [L=1446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.67 # Mc/sec: 6174.27 // Query: T036557_2 [L=1445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.60 # Mc/sec: 6889.83 // Query: T036557_3 [L=1445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 7381.96 // Query: T143309_1 [L=3337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.65 # Mc/sec: 14687.06 // Query: T143309_2 [L=3337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.26s 00:00:01.39 Elapsed: 00:00:00.54 # Mc/sec: 17678.87 // Query: T143309_3 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 14460.20 // Query: T052057_1 [L=694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1134 (0.069545); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 2919.73 // Query: T052057_2 [L=693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 861 (0.0528026); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 3250.09 // Query: T052057_3 [L=693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 609 (0.0373482); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 3304.26 // Query: T348437_1 [L=1843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1103 (0.0676438); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 7322.93 // Query: T348437_2 [L=1843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.76 # Mc/sec: 6937.51 // Query: T348437_3 [L=1842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1304 (0.0799706); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 87 (0.00533546); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.70 # Mc/sec: 7528.07 // Query: T153626_1 [L=4510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.34s 00:00:01.71 Elapsed: 00:00:00.70 # Mc/sec: 18431.92 // Query: T153626_2 [L=4510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.40s 00:00:01.77 Elapsed: 00:00:00.71 # Mc/sec: 18172.31 // Query: T153626_3 [L=4509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4509 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.38s 00:00:01.83 Elapsed: 00:00:00.76 # Mc/sec: 16973.00 // Query: T137626_1 [L=9216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 783 (0.0480191); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.07u 0.47s 00:00:04.54 Elapsed: 00:00:01.07 # Mc/sec: 24640.57 // Query: T137626_2 [L=9216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1592 (0.0976328); expected 326.1 (0.02) Passed bias filter: 318 (0.019502); expected 326.1 (0.02) Passed Vit filter: 184 (0.0112842); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.11u 0.68s 00:00:07.79 Elapsed: 00:00:01.49 # Mc/sec: 17694.91 // Query: T137626_3 [L=9215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1531 (0.0938918); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 142 (0.00870845); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.47u 0.66s 00:00:06.13 Elapsed: 00:00:01.23 # Mc/sec: 21432.97 // Query: T259009_1 [L=2400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 9405.47 // Query: T259009_2 [L=2399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 9804.47 // Query: T259009_3 [L=2399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 9150.84 // Query: T316889_1 [L=1175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 5510.62 // Query: T316889_2 [L=1175] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1175 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 4943.35 // Query: T316889_3 [L=1174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 6337.01 // Query: T351135_1 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.4 0.1 0.073 12.8 0.1 1.8 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.1 4.5e-06 0.073 15 43 .. 853 885 .. 849 892 .. 0.80 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 4.5e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351135_1 853 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 885 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.60 # Mc/sec: 8439.45 // Query: T351135_2 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-21 74.3 7.5 1.4e-20 72.8 4.6 2.6 2 Transposase_1 Transposase (partial DDE domain) 0.0026 17.4 0.4 0.0047 16.6 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.055 13.6 0.0 0.12 12.5 0.0 1.5 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.053 2.9e+02 25 38 .. 663 676 .. 659 678 .. 0.80 2 ! 72.8 4.6 2.6e-24 1.4e-20 14 79 .. 848 917 .. 827 918 .. 0.86 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.053 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351135_2 663 EKLSKNAMLTIVWS 676 45569********8 PP == domain 2 score: 72.8 bits; conditional E-value: 2.6e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351135_2 848 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 917 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.4 8.7e-07 0.0047 55 143 .. 888 981 .. 820 983 .. 0.76 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 8.7e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351135_2 888 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 981 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 2.2e-05 0.12 5 23 .. 1695 1713 .. 1692 1719 .. 0.86 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.2e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351135_2 1695 NLVCQVFPREYLANHNCGR 1713 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.97u 0.38s 00:00:01.35 Elapsed: 00:00:00.72 # Mc/sec: 7032.87 // Query: T351135_3 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 7790.26 // Query: T051152_1 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 3247.88 // Query: T051152_2 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 3620.59 // Query: T051152_3 [L=771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 4324.90 // Query: T287708_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 8577.09 // Query: T287708_2 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 7327.42 // Query: T287708_3 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-08 32.2 0.0 1.4e-07 31.2 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.0 8.3e-12 1.4e-07 15 78 .. 185 248 .. 177 250 .. 0.84 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 8.3e-12 Transposase_1 15 getpkkvpkpelhq.kkvmltVwW.sakgliyyeflppgetitsevYaqqldklr.qklqekrpalv 78 +e pk+++kp+lh k + W s + l +y+fl+pg+t se+Yaqq+d+++ + lq+++palv T287708_3 185 EEGPKHFKKPNLHP*KDLVT--GW*SVACLTHYSFLNPGTTTVSEKYAQQIDEMH*K-LQCLQPALV 248 5789***********99655..5*******************************743.455556555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 6780.59 // Query: T090213_1 [L=1639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.67 # Mc/sec: 6998.36 // Query: T090213_2 [L=1639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 9017.12 // Query: T090213_3 [L=1639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 7442.70 // Query: T085621_1 [L=6659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.33u 0.43s 00:00:02.76 Elapsed: 00:00:00.90 # Mc/sec: 21166.96 // Query: T085621_2 [L=6659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-11 42.1 0.0 4.5e-11 41.6 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.6 0.0 2.7e-15 4.5e-11 305 348 .. 147 192 .. 131 227 .. 0.81 Alignments for each domain: == domain 1 score: 41.6 bits; conditional E-value: 2.7e-15 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085621_2 147 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 192 69***************************************96331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.06u 0.42s 00:00:02.48 Elapsed: 00:00:00.83 # Mc/sec: 22952.13 // Query: T085621_3 [L=6659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.36s 00:00:02.23 Elapsed: 00:00:00.70 # Mc/sec: 27214.67 // Query: T091114_1 [L=2945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 642 (0.039372); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.65 # Mc/sec: 12961.76 // Query: T091114_2 [L=2945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-07 30.9 0.0 2.7e-07 30.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 0.0 1.7e-11 2.7e-07 134 176 .. 2887 2938 .. 2857 2940 .. 0.88 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 1.7e-11 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 qG++lSPllfn++++ l r +r++ ++v+l+++aDD+ ++ ++ T091114_2 2887 QGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMNVHLEN 2938 ***********************99**********************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 430 (0.0263707); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.62 # Mc/sec: 13588.94 // Query: T091114_3 [L=2944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.27s 00:00:01.38 Elapsed: 00:00:00.52 # Mc/sec: 16196.70 // Query: T156243_1 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 5840.86 // Query: T156243_2 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 5230.62 // Query: T156243_3 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 5305.54 // Query: T110889_1 [L=630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-08 34.4 0.3 5e-08 33.6 0.3 1.3 1 Lbh Cardiac transcription factor regulator, Development Domain annotation for each model (and alignments): >> Lbh Cardiac transcription factor regulator, Developmental protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.6 0.3 3.1e-12 5e-08 55 80 .. 479 504 .. 472 509 .. 0.93 Alignments for each domain: == domain 1 score: 33.6 bits; conditional E-value: 3.1e-12 Lbh 55 trLPSiVVEasevgeeesgelrwPhe 80 rLPSiVVE+se +esgelrwP e T110889_1 479 QRLPSIVVEPSEADPVESGELRWPLE 504 59**********************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 3400.61 // Query: T110889_2 [L=630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3678.21 // Query: T110889_3 [L=630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3754.84 // Query: T318332_1 [L=1052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 5901.16 // Query: T318332_2 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6136.19 // Query: T318332_3 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5895.55 // Query: T187638_1 [L=879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-123 410.2 7.4 8.9e-123 409.6 7.4 1.2 1 Transposase_22 L1 transposable element 1e-08 34.9 1.0 2.5e-08 33.7 1.0 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 4.9e-08 33.1 0.0 1.3e-07 31.7 0.0 1.8 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.54 10.0 7.9 1.1 8.9 7.9 1.5 1 CCDC66 Coiled-coil domain-containing protein 66 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 409.6 7.4 2.2e-126 8.9e-123 145 366 .. 22 245 .. 16 247 .. 0.99 Alignments for each domain: == domain 1 score: 409.6 bits; conditional E-value: 2.2e-126 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 +d+leervsa+ede++e+++e k+rekr+k++eqslq+i+d vkrPnl liGv+es+ e+++klen+l +ii+enfPnl+++an++iqei+rtP T187638_1 22 CDQLEERVSAMEDEMNEMKQEEKFREKRIKRKEQSLQEIWDCVKRPNLHLIGVPESDGENGTKLENTLWDIIQENFPNLARQANIQIQEIQRTPL 116 8********************************************************************************************** PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidk 334 r++s+ra++rhiivr+tkv++k+k+l+a+rekGr+t kGkPirltadlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk T187638_1 117 RYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRLTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDK 211 *********************************************************************************************** PP HHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXX CS Transposase_22 335 tklrdylstrPalkrllke..knerkdryqaleq 366 ++lrd+++trPal++llke +er++ryq+l++ T187638_1 212 QMLRDFVTTRPALQELLKEplSMERNNRYQPLQK 245 ********************9***********97 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 1.0 6.2e-12 2.5e-08 2 118 .. 380 503 .. 379 504 .. 0.87 Alignments for each domain: == domain 1 score: 33.7 bits; conditional E-value: 6.2e-12 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i ++Y p++ + + +++ l +l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T187638_1 380 TILNIYAPNTG-APRFIKQVLGDLQRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDIQELNSALHQADLIDIyrtLHPKST*YTFFSAPHhtY 471 7999***9999.777777778888888876.8***************9888879****************966777788999999988777668 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T187638_1 472 SKIDHIVGSKALLSKckRTEIITNCLSDHNAI 503 ***************98666779*******98 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.0 3.3e-11 1.3e-07 1 113 [] 282 500 .. 282 500 .. 0.78 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 3.3e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEEC...SEEEEE.............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx...xxxxxx.............. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsr...fpltsl.............. 77 lt Nvng ++ + ++ +la++ k++d+ v ++qE++ + ++ +l+ + ++ + ++++ gva+l+ f+ t++ T187638_1 282 LTLNVNG----LNAPIKRHRLANWKKSQDPSVCCIQETHLKCRETHRLKIkgWRKIYQANGKQKKAGVAILVD*tdFKPTKIkrdkeghyiiikgs 373 699****....7778899*******************99999888877778844555666666677776665332255555556666666666666 PP ....................................EEEEEE-SS................................................... CS ....................................xxxxxxxxx................................................... RF Exo_endo_phos 78 ....................................vivlGDfNa................................................... 86 i++GDfN+ T187638_1 374 iqqeeltilniyapntgaprfikqvlgdlqrdldshTIIMGDFNTplstldrstrqkvnkdiqelnsalhqadlidiyrtlhpkst*ytffsaphh 469 666688888999999999999999999999999999*********999999999999999999999999999999999999999999999999999 PP ...-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ...xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ...rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T187638_1 470 tysKIDHIVGSKALLSKCKRTEIITNClSDH 500 88888****9985554444444443337888 PP >> CCDC66 Coiled-coil domain-containing protein 66 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 7.9 0.00028 1.1 63 101 .. 23 61 .. 22 68 .. 0.93 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00028 CCDC66 63 kQleEkerikklEkerrrqeeqeeeeRlrRereqeqerl 101 QleE+ + E ++ +qee+ e+R++R+ + +qe T187638_1 23 DQLEERVSAMEDEMNEMKQEEKFREKRIKRKEQSLQEIW 61 5***********************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 742 (0.0455047); expected 326.1 (0.02) Passed bias filter: 447 (0.0274132); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 4490.48 // Query: T187638_2 [L=878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 79 (0.00484484); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5023.62 // Query: T187638_3 [L=878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4925.12 // Query: T369913_1 [L=3808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:00.57 # Mc/sec: 18782.83 // Query: T369913_2 [L=3807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 541 (0.033178); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.56 # Mc/sec: 19448.54 // Query: T369913_3 [L=3807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 19448.54 // Query: T037140_1 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4513.11 // Query: T037140_2 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4422.84 // Query: T037140_3 [L=772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4247.23 // Query: T337154_1 [L=5671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.60 # Mc/sec: 27039.61 // Query: T337154_2 [L=5670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.60 # Mc/sec: 27034.84 // Query: T337154_3 [L=5670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.24u 0.40s 00:00:02.64 Elapsed: 00:00:00.70 # Mc/sec: 23172.72 // Query: T375713_1 [L=412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2405.43 // Query: T375713_2 [L=412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 2311.10 // Query: T375713_3 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 644 (0.0394947); expected 326.1 (0.02) Passed bias filter: 354 (0.0217098); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 2305.49 // Query: T124750_1 [L=228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0032 16.2 0.1 0.0042 15.8 0.1 1.0 1 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.1 2.6e-07 0.0042 356 377 .. 162 183 .. 158 185 .. 0.91 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 2.6e-07 Tektin 356 eleediavKanslfiDeekcle 377 +le++iavK+nsl++D++ c+ T124750_1 162 SLEKNIAVKTNSLYVDRQACMA 183 79******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 1304.54 // Query: T124750_2 [L=227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1325.32 // Query: T124750_3 [L=227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1298.82 // Query: T109564_1 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 10533.06 // Query: T109564_2 [L=2024] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2024 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11135.23 // Query: T109564_3 [L=2024] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2024 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11135.23 // Query: T089163_1 [L=3093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-51 173.7 0.6 9e-51 172.7 0.6 1.4 1 Transposase_22 L1 transposable element 9.9e-07 28.4 0.1 0.046 13.1 0.0 2.2 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly ------ inclusion threshold ------ 0.085 12.5 0.4 2 8.1 0.1 2.5 2 DivIC Septum formation initiator Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 172.7 0.6 1.7e-54 9e-51 255 367 .. 1731 1845 .. 1730 1846 .. 0.98 Alignments for each domain: == domain 1 score: 172.7 bits; conditional E-value: 1.7e-54 ESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 255 ttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal 347 + kv++k+k+lka+rekG+vt kGkP+rlt dlsaetl+arr+w+++++ilk k fqPr++y k+s+i++Geik f dk+ l+d+++trP l T089163_1 1731 FFKVKMKEKLLKAAREKGQVTHKGKPVRLTMDLSAETLQARRDWGPIFNILKGKSFQPRISYLDKVSFISEGEIKSFPDKKILKDFVTTRPVL 1823 5699***************************************************************************************** PP HHHHTT..T-SSXSSXXXXXXX CS Transposase_22 348 krllke..knerkdryqaleqa 367 ++llke ++erk+ryq+l+++ T089163_1 1824 QELLKEalNMERKNRYQPLQKH 1845 ********************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.1 0.0 8.5e-06 0.046 2 48 .. 2385 2436 .. 2384 2442 .. 0.83 2 ! 13.1 0.0 8.5e-06 0.046 156 199 .. 2564 2608 .. 2553 2609 .. 0.88 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 8.5e-06 E-TT......S-EEE......-THHHHCTB-...-.........-------HHHH CS RVT_1 2 pKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpg 48 pK+g ++++Rpisl+++ k+lnk++a + ++++kl++++q+ f pg T089163_1 2385 PKPGrntteKENFRPISLMNIHAKVLNKILAn*iQ---QHIKKLIPHDQVSFIPG 2436 78888888899******************963333...67777899999999988 PP == domain 2 score: 13.1 bits; conditional E-value: 8.5e-06 ......TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BE CS RVT_1 156 krakgvtllrYaDDililskskee.lqelleaveewlkesglkin 199 +r g +++ +aDD++++ +++ +q+lle + ++ k sg+kin T089163_1 2564 NRKRGSQVVFFADDMILYLENPVIsAQKLLELINNFSKISGYKIN 2608 444699***************9988*******************9 PP >> DivIC Septum formation initiator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 0.033 1.8e+02 4 33 .. 659 688 .. 657 694 .. 0.86 2 ? 8.1 0.1 0.00037 2 16 51 .. 1565 1600 .. 1554 1609 .. 0.80 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.033 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHH CS DivIC 4 lfllllifgkkgllaykqlkqeiaalqael 33 + ++l+i + +gl+++ ++++e+a l l T089163_1 659 WSAVLCIVLISGLSDIIEQRRELAVLALSL 688 77899******************9987665 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00037 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS DivIC 16 llaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 + +++e + l ++l++l ++ +Le++++dL T089163_1 1565 NKHVLTQHEEAKNLDKTLEELITRITSLERNINDLM 1600 44567899**************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 13012.57 // Query: T089163_2 [L=3093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-19 69.3 0.3 5.3e-19 68.5 0.3 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.046 13.8 0.0 0.097 12.8 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.31 10.4 3.6 0.71 9.2 3.6 1.6 1 Leader_CPA1 arg-2/CPA1 leader peptide Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.5 0.3 9.8e-23 5.3e-19 39 155 .. 2438 2554 .. 2418 2554 .. 0.89 Alignments for each domain: == domain 1 score: 68.5 bits; conditional E-value: 9.8e-23 ------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST- CS RVT_1 39 senqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGs 136 + q +r++ +++++++++ + k k++ + +D +kaFd++++++ +++l++++++ + ++i++++ ++++++++ng++ + + k+ +qG+ T089163_2 2438 KAVQHKQINKRNINKSINVIHHISRTKDKNHKIFPIDAEKAFDKIQHPFMFNTLNKLGIDGTYFQIIRAIYDKPTANIKFNGQKLKAFSLKTSRRQGC 2535 455666677788888899*****9999999*****************************************************99************* PP TTHHHHHHHHHHHHHTT-T CS RVT_1 137 vlSPllfnlfmnellrelr 155 +lSPllfn++++ l re+r T089163_2 2536 PLSPLLFNIVLEVLAREIR 2554 **************99986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 1.8e-05 0.097 1 47 [. 1880 1922 .. 1880 1988 .. 0.83 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlp 47 lt Nvng ++ + ++ +la++++++d+ v ++qE++ ++ + T089163_2 1880 LTLNVNG----LNAPIKRHRLANWIRSQDPLVCCIQETHLTCKDTHR 1922 699****....7778899*******************9887765554 PP >> Leader_CPA1 arg-2/CPA1 leader peptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 3.6 0.00013 0.71 4 23 .] 1979 1998 .. 1977 1998 .. 0.93 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00013 XXXXXX-HHHHHHHHHHHHH CS Leader_CPA1 4 spSqYTCqDYISDHiWKasS 23 +S+Y C+ Y S+Hi K+sS T089163_2 1979 NYSEYICTQYQSTHIHKTSS 1998 69*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.57 # Mc/sec: 15256.12 // Query: T089163_3 [L=3092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-38 132.9 11.1 4.6e-37 127.6 4.7 2.3 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.8 0.4 3.6e-05 0.58 10 62 .. 1506 1556 .. 1499 1558 .. 0.88 2 ! 127.6 4.7 2.8e-41 4.6e-37 165 268 .. 1640 1743 .. 1638 1753 .. 0.94 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 3.6e-05 XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 10 rkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelke 62 ++ +nsk +++s+ +++ + sP+ +++ +++++el + ++++ k+ e T089163_3 1506 KNAENSKGQSASSSPNDPNISPSR--AQNWTENQMDELTEVGFRRWVIKNYDE 1556 5789*********99999999999..99****************977666555 PP == domain 2 score: 127.6 bits; conditional E-value: 2.8e-41 HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS CS Transposase_22 165 evkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk 257 +++ ++kr+k++eqslq+i+d++kr nl+liGv+e + e+++klen+l++ii+enfP l+ +an++iqei+rtP r +++r+++rhii+r+ + T089163_3 1640 QTRIEKKRMKRNEQSLQEIWDFIKRLNLQLIGVPEGDRENGNKLENTLQDIIQENFPSLAGQANMQIQEIQRTPLRLSRRRSTPRHIIIRFFQ 1732 567789*************************************************************************************** PP HHHHHHHHHHH CS Transposase_22 258 vlnkdkilkav 268 +n k lk T089163_3 1733 GQNEGKTLKGS 1743 *******9964 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.66 # Mc/sec: 13402.56 // Query: T323251_1 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 15.8 35.3 0.028 14.5 15.6 5.6 4 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 3.8 8.8e-05 1.4 25 50 .] 326 351 .. 323 351 .. 0.87 2 ? 14.5 15.6 1.7e-06 0.028 2 46 .. 377 424 .. 376 428 .. 0.94 3 ? -0.5 0.2 0.081 1.3e+03 22 48 .. 550 574 .. 546 581 .. 0.56 4 ? -2.7 0.0 0.4 6.5e+03 21 47 .. 1007 1033 .. 1005 1034 .. 0.77 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 8.8e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323251_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 2 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323251_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 3 score: -0.5 bits; conditional E-value: 0.081 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323251_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP == domain 4 score: -2.7 bits; conditional E-value: 0.4 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 g++++ + A +G ++gL+rP+ T323251_1 1007 GPGQADLTTVWACRGRREEELGLERPT 1033 566666666678888888999****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 7531.96 // Query: T323251_2 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 7178.90 // Query: T323251_3 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 23.8 22.1 0.00028 20.9 6.0 6.6 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.5 1 1.6e+04 35 48 .. 201 214 .. 199 214 .. 0.80 2 ? -3.1 0.2 0.53 8.6e+03 21 47 .. 248 274 .. 247 276 .. 0.81 3 ? 0.9 1.0 0.03 5e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 20.9 6.0 1.7e-08 0.00028 26 50 .] 357 381 .. 336 381 .. 0.82 5 ! 18.6 8.2 8.7e-08 0.0014 3 38 .. 388 422 .. 386 431 .. 0.89 6 ? -0.4 2.5 0.075 1.2e+03 2 14 .. 431 446 .. 430 462 .. 0.73 7 ? -2.8 0.1 0.44 7.1e+03 24 38 .. 584 598 .. 578 611 .. 0.63 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323251_3 201 GPGRPTCSSSRPTS 214 78888888889987 PP == domain 2 score: -3.1 bits; conditional E-value: 0.53 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 + r++a ++ A++ p l ++L + s T323251_3 248 CHRRAGAEPGEATVRPDLGLGSLASGS 274 77799999999**99999888887764 PP == domain 3 score: 0.9 bits; conditional E-value: 0.03 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323251_3 324 PGLCLPHGGLCRPSC 338 345556667777755 PP == domain 4 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323251_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323251_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: -0.4 bits; conditional E-value: 0.075 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323251_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -2.8 bits; conditional E-value: 0.44 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323251_3 584 RGSRRPLSAWQGPVR 598 666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 6752.40 // Query: T381201_1 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 2107.98 // Query: T381201_2 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2031.67 // Query: T381201_3 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 565 (0.0346498); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.55 # Mc/sec: 2179.43 // Query: T234592_1 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 10502.15 // Query: T234592_2 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.63 # Mc/sec: 11502.35 // Query: T234592_3 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.60 # Mc/sec: 12077.47 // Query: T277146_1 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 10183.81 // Query: T277146_2 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.29s 00:00:01.39 Elapsed: 00:00:00.60 # Mc/sec: 13069.23 // Query: T277146_3 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.71 # Mc/sec: 11044.42 // Query: T111718_1 [L=6630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.1 1.6 0.19 11.5 1.6 1.1 1 Sec8_exocyst Sec8 exocyst complex component specific domain Domain annotation for each model (and alignments): >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 1.6 1.2e-05 0.19 62 120 .. 6305 6363 .. 6300 6365 .. 0.92 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.2e-05 Sec8_exocyst 62 ehyqaFnssigsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyk 120 e + Fn+ + +k + i+e ++ +++lK+sl e ++ l + +k ++el++rs++ + T111718_1 6305 EQWENFNKETENAKKYQTEIMELKNMITALKKSLDEGNSRLDQAEKRISELKERSLEIN 6363 66789**************************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 807 (0.049491); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.08u 0.41s 00:00:03.49 Elapsed: 00:00:00.92 # Mc/sec: 20616.63 // Query: T111718_2 [L=6629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 17.4 3.8 0.0016 17.3 2.2 1.7 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 2.2 9.5e-08 0.0016 211 259 .. 6404 6452 .. 6396 6453 .. 0.92 2 ? -1.4 0.0 0.047 7.6e+02 292 332 .. 6479 6520 .. 6477 6523 .. 0.86 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 9.5e-08 HHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 211 ilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 i+++i en +l k+++ +iqe+++ Pn+ +sk ++r i ++++k++ T111718_2 6404 IFKEITVENSSDLWKKMDTQIQEAQKIPNKMNSKTFTARDIKIKLSKTK 6452 89*****************************************998875 PP == domain 2 score: -1.4 bits; conditional E-value: 0.047 HHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEES CS Transposase_22 292 lkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfi 332 l +rew d++++l k+ + + P kls+ + e f+ T111718_2 6479 LANQREWDDILKVLTFLKLPSKNTVPGkKLSFRNEDERHTFQ 6520 5678***************99999996369**9999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.08u 0.38s 00:00:02.46 Elapsed: 00:00:00.79 # Mc/sec: 24005.62 // Query: T111718_3 [L=6629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.43s 00:00:02.44 Elapsed: 00:00:00.79 # Mc/sec: 24005.62 // Query: T067749_1 [L=1248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 708 (0.0434196); expected 326.1 (0.02) Passed bias filter: 282 (0.0172942); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.41s 00:00:01.56 Elapsed: 00:00:00.72 # Mc/sec: 4958.77 // Query: T067749_2 [L=1248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 582 (0.0356924); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 6263.71 // Query: T067749_3 [L=1247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.88 # Mc/sec: 4053.93 // Query: T182898_1 [L=5254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.77 # Mc/sec: 19520.52 // Query: T182898_2 [L=5253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.40s 00:00:02.02 Elapsed: 00:00:00.76 # Mc/sec: 19773.61 // Query: T182898_3 [L=5253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.38s 00:00:01.97 Elapsed: 00:00:00.73 # Mc/sec: 20586.22 // Query: T317202_1 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 6565.84 // Query: T317202_2 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.66 # Mc/sec: 6068.43 // Query: T317202_3 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 5721.66 // Query: T212549_1 [L=2255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.63 # Mc/sec: 10239.95 // Query: T212549_2 [L=2254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 9920.48 // Query: T212549_3 [L=2254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 8955.99 // Query: T381604_1 [L=4770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.35s 00:00:01.90 Elapsed: 00:00:00.72 # Mc/sec: 18953.00 // Query: T381604_2 [L=4769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.8 0.0 0.09 12.9 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 5.5e-06 0.09 18 53 .. 1239 1274 .. 1234 1278 .. 0.89 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.5e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381604_2 1239 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1274 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.56 # Mc/sec: 23935.61 // Query: T381604_3 [L=4769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 465 (0.0285171); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:00.78 # Mc/sec: 17491.41 // Query: T293624_1 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0006 19.3 2.1 0.0014 18.1 2.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) 0.00077 18.9 0.0 0.0014 18.1 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.57 10.4 5.3 1.2 9.3 5.3 1.5 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 2.1 2.6e-07 0.0014 7 19 .] 3938 3950 .. 3938 3950 .. 0.99 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 2.6e-07 DUF1725 7 MELEnIILSEisQ 19 MELE+IILSE++Q T293624_1 3938 MELETIILSEVTQ 3950 ************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 2.5e-07 0.0014 126 158 .. 3286 3318 .. 3284 3333 .. 0.84 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 2.5e-07 EEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 126 ryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++ g++qG++lSPl+fn++++ l r +r++ T293624_1 3286 FPLRPGTRQGCPLSPLVFNIVLEVLARAIRQEK 3318 677789***********************9965 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 5.3 0.00023 1.2 8 31 .. 3895 3918 .. 3892 3924 .. 0.79 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00023 Mit_proteolip 8 nvWiplkpyYtqvYqeIwvemglm 31 n Wi Y+++Y++I++ +++ T293624_1 3895 NEWIKKMYIYIYIYIYIYICTHTH 3918 889987777888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.76 # Mc/sec: 15339.32 // Query: T293624_2 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-26 93.1 5.0 2.7e-24 85.6 1.8 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 1.5 9.0 7.2 1.2 9.3 5.0 1.9 2 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.6 1.8 3.3e-28 2.7e-24 190 273 .. 2335 2416 .. 2312 2431 .. 0.92 2 ! 8.2 0.1 0.00011 0.91 329 354 .. 2472 2499 .. 2470 2508 .. 0.81 Alignments for each domain: == domain 1 score: 85.6 bits; conditional E-value: 3.3e-28 TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS- CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGr 273 Pnlr+iGv+e+e e+ k leni++ ii+enfP l+++++++iqe++rt +++ kr s+rhii+r++kv +k+ il avr+k T293624_2 2335 PNLRIIGVPEEE-EKSKSLENIFEGIIKENFPGLARDLDIQIQEAQRTLEKFIAKR-SPRHIIIRLSKVTMKEIILSAVRQKAS 2416 9********976.6889************************************999.7***********************975 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00011 EEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 329 kvfidktklrdylstrPalkrllke..k 354 ++f dk++ r++ +t+Pa++++ k + T293624_2 2472 RYFSDKQMQREFATTKPAVQEVQKGvlN 2499 79*******************9886444 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.59 4.8e+03 24 47 .. 1119 1143 .. 1118 1148 .. 0.81 2 ? 9.3 5.0 0.00015 1.2 17 36 .. 3903 3922 .. 3900 3937 .. 0.60 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.59 Mit_proteolip 24 Iwvemglm.gfivykirsADkaska 47 I+v + l+ fi + +ADk + T293624_2 1119 IYVSVELLrVFIRSALGAADKQVSK 1143 88988876369*********98765 PP == domain 2 score: 9.3 bits; conditional E-value: 0.00015 Mit_proteolip 17 YtqvYqeIwvemglmgfivy 36 Y+++Y++I+++ ++ ++ y T293624_2 3903 YIYIYIYIYIYAHTHTMEYY 3922 77777777777776665434 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.42u 0.33s 00:00:01.75 Elapsed: 00:00:00.64 # Mc/sec: 18215.44 // Query: T293624_3 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-22 79.7 3.0 3.8e-22 78.8 3.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.82 9.9 5.0 2.1 8.6 5.0 1.6 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.8 3.0 4.6e-26 3.8e-22 2 208 .. 3152 3376 .. 3151 3397 .. 0.81 Alignments for each domain: == domain 1 score: 78.8 bits; conditional E-value: 4.6e-26 E-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 2 pKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgr....stldaveellkalkkkkkaklllklDlkkaFdsvpleellr 90 pK+g +++yRpi l+++d k lnk++a+r++++++k+++++q+gf pg ++++++++++++++ k+k+++++++D +kaFd+++ ++ ++ T293624_3 3152 PKPGkdiikKENYRPIFLINIDAKFLNKILANRIQQHINKIIHHDQVGFIPGMqg*fNIHKSINVMHHINRIKNKNHTIISIDTEKAFDKIQRHFMIK 3249 666666777789****************************************63333688888999999999************************** PP GGG-EEET...................................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHH CS RVT_1 91 kltafkvptklinliksflstrsfsvrvngee..........segryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskske 178 +l ++ ++ + +n+ik++ + ++++ +ng + +++ ++ +++ q s+ SP+ +n + + ++ k +++l+++a ++i+ ++++ T293624_3 3250 TLSKIDIEGTYLNVIKAIDDKLTANIILNGGKlkafppktwnKTRMPTFTTCIQHSTGSPSQSNQTREIKGIQIGK--GEIKLSLFANNMIIYLENPK 3345 ****************998888888888776401111111113445555666677777777777777776666666..59****************66 PP H.HHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 179 e.lqelleaveewlkesglkinpeKtklvlf 208 + +++l+ + e+ k sg+k n +K ++l+ T293624_3 3346 DsSNKHLDLINEFGKVSGYKANVHKLIALLY 3376 66***********************988876 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 5.0 0.00025 2.1 17 32 .. 3902 3917 .. 3896 3918 .. 0.90 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00025 Mit_proteolip 17 YtqvYqeIwvemglmg 32 Y+++Y++I+++m++ + T293624_3 3902 YIYIYIYIYIYMHTHT 3917 9************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.71 # Mc/sec: 16419.55 // Query: T185624_1 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 2827.82 // Query: T185624_2 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.9 8.5 6.3 21 5.2 0.3 2.7 3 TetR_C_12 Bacterial transcriptional repressor C-terminal Domain annotation for each model (and alignments): >> TetR_C_12 Bacterial transcriptional repressor C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.3 0.0013 21 60 79 .. 283 302 .. 269 303 .. 0.84 2 ? 4.8 0.1 0.0017 27 60 79 .. 297 316 .. 292 318 .. 0.90 3 ? 4.7 0.3 0.0018 29 60 78 .. 325 343 .. 317 346 .. 0.88 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0013 CCTT---SS-HHHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFWs 79 +r W++r++++ve+r W T185624_2 283 VRSSWKSRRSPEVEVRSSWK 302 7999*************995 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0017 CCTT---SS-HHHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFWs 79 +r W++r++++ve+r W T185624_2 297 VRSSWKSRRSPEVEVRSSWK 316 6899*************995 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0018 CCTT---SS-HHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFW 78 +r W++r++++ve+r W T185624_2 325 VRSSWKSRRSPEVEVRSSW 343 7999*************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3000.95 // Query: T185624_3 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 2574.75 // Query: T156435_1 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 9590.59 // Query: T156435_2 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.72 # Mc/sec: 8391.77 // Query: T156435_3 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11613.87 // Query: T263457_1 [L=3146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-27 93.9 0.1 1.4e-26 93.3 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.3 0.1 8.6e-31 1.4e-26 81 222 .] 2460 2627 .. 2455 2627 .. 0.93 Alignments for each domain: == domain 1 score: 93.3 bits; conditional E-value: 8.6e-31 CCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTE CS RVT_1 81 dsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDD 169 ++++ ++ l++l++++++ + +++i++++ + ++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r+++ ++v+l+++aDD T263457_1 2460 FKIQQPFMLKTLNKVGIDGMYLKIIRAIYDKSTANIILNGHKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEMeikgiqlgkEEVKLSLFADD 2557 78999************************************99**********************************9******************** PP EEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 170 ililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++++ ++ ++q+ + ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T263457_1 2558 MIVYLENpIVSAQNRFKLISNFSKISGYKINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2627 *******6677***************************99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 14062.77 // Query: T263457_2 [L=3145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-103 346.1 7.5 3.8e-103 345.0 7.5 1.5 1 Transposase_22 L1 transposable element 8e-11 41.7 0.3 2.5e-10 40.2 0.3 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 7e-10 39.0 0.0 1.4e-09 38.1 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.7e-08 33.5 0.4 8.4e-08 32.0 0.4 1.9 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 2.9e-08 33.0 0.7 8e-08 31.6 0.7 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 345.0 7.5 1.2e-106 3.8e-103 171 368 .] 1631 1830 .. 1626 1830 .. 0.99 Alignments for each domain: == domain 1 score: 345.0 bits; conditional E-value: 1.2e-106 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 kr+k++eqslq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enf nl+++an++iqei+r P+r++s+ra++rh+ vr++kv++k+k T263457_2 1631 KRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFHNLARQANIQIQEIQRMPQRYSSRRATARHLTVRFSKVEMKEK 1723 9******************************************************************************************** PP HHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 264 ilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..k 354 +l+a++ekGrvt k kPirltadlsaetl+arrew+++++ilk+k+fqPr++yPakls++++Geik f dk++lrd+ +trPalk+llke + T263457_2 1724 MLRAAKEKGRVTHKRKPIRLTADLSAETLQARREWGPIFNILKDKNFQPRISYPAKLSFTSEGEIKCFTDKQMLRDFATTRPALKELLKEalN 1816 ********************************************************************************************* PP -SSXSSXXXXXXXX CS Transposase_22 355 nerkdryqaleqar 368 + r++ryq+l++++ T263457_2 1817 MGRNNRYQPLQKHA 1830 ***********996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.0 2 6.6e+03 101 155 .. 55 99 .. 51 101 .. 0.73 2 ! 40.2 0.3 7.5e-14 2.5e-10 1 83 [. 2371 2462 .. 2371 2465 .. 0.91 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 2 .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelr 155 ++ l++s+l+ + ++ ek +l G++l+ l ++ +++ ++ + T263457_2 55 QTSLLESVLTI----------NYHFTMEKGRLELGCALAGLHWQTRCHHTDNNIL 99 55555555522..........337778899999***********99999888776 PP == domain 2 score: 40.2 bits; conditional E-value: 7.5e-14 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCS CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsv 83 ipK+g ++++Rpisl++++ k+lnk++a + ++++kll+++q+gf pg + + ++ ++++++++ ++k+++++++D + aF + T263457_2 2371 IPKPGrdttkKENFRPISLMNINAKILNKILAn*iQ---QHIKKLLHHDQVGFIPGMQAWFNIcksvNVIQHINRTNNKNHVIISIDAEEAFSKF 2462 899999999999******************964434...688888***************999***99999999999999************875 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.0 4.3e-13 1.4e-09 1 113 [] 1865 2084 .. 1865 2084 .. 0.87 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 4.3e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++++ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T263457_2 1865 LTLNVNG----LNAPIKRHRLANWIKSQEPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkevhyimv 1954 699****....7778899*******************9998887776666886677788899999***********7777888*********** PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T263457_2 1955 kgsiqqeeltilniyapntgaprfikqvlrdlqrdldfhTIIMGDFNTplstldrstrqkgnkviqelnsalhqadlidvygtlrpksteytff 2048 ************************************************9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l ++ + + + SDH T263457_2 2049 saphhtysKIDHIVGSKALLSKHKRTEIITNClSDH 2084 9888888888****9995555544444444337998 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 0.4 2.6e-11 8.4e-08 2 118 .. 1964 2087 .. 1963 2088 .. 0.81 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 2.6e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+ ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T263457_2 1964 TILNIYAPNTG-APRFIKQVLRDLQRDLD-FHTIIMGDFNTPLSTLDRSTRQKgNKVIQELNSALHQADLIDVygtLRPKSTeYTFFSAPHh 2053 7999***9999.66777777777777776.49****************888889999************99666764444444666665555 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T263457_2 2054 tYSKIDHIVGSKALLSKhkRTEIITNCLSDHSAI 2087 67*************9999777779******998 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.6 0.7 2.4e-11 8e-08 1 19 [] 3096 3114 .. 3096 3114 .. 0.98 Alignments for each domain: == domain 1 score: 31.6 bits; conditional E-value: 2.4e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS+ sQ T263457_2 3096 SFVGTWMKLETIILSKLSQ 3114 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 561 (0.0344045); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.34u 0.33s 00:00:01.67 Elapsed: 00:00:00.65 # Mc/sec: 13842.02 // Query: T263457_3 [L=3145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-30 103.8 15.7 1.2e-29 103.2 15.7 1.2 1 Transposase_22 L1 transposable element 0.00061 19.9 4.6 0.0012 19.0 4.6 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0032 17.9 4.9 0.0032 17.9 4.9 1.8 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.2 15.7 2.2e-33 1.2e-29 1 171 [. 1495 1631 .. 1495 1640 .. 0.93 Alignments for each domain: == domain 1 score: 103.2 bits; conditional E-value: 2.2e-33 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekeentekqlkiikekq 92 +Gkk+ rk++nsk +++s+P+ke+sssPa e+ ++++df+elr+e++++++y+elke++++++ke++ ++k +ee + + ek T263457_3 1495 MGKKQ---SRKTGNSKNQSASPPPKERSSSPAM--EQRWMENDFDELREEGFRRSNYSELKEEVRTHGKEVKnFEKRLEEWLTRMTN--AEKS 1580 79999...9************************..************************************99*******6666655..2332 PP ............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerek 171 ++l+elkt ++el++e+ slssr d+leervs +ed++ e++re k+r k T263457_3 1581 L----------NNLMELKTTTQELRDECT------------------SLSSRFDQLEERVSVMEDQMIEMKREEKFRVK 1631 2..........37****************..................*****************************988 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 4.6 2.1e-07 0.0012 5 99 .. 1527 1621 .. 1524 1624 .. 0.96 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 2.1e-07 HHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 5 klirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 +++ +++++++e +R +++++ +e+ ++ ++ +++lee ++ ++ k+ ++++ k ++el++e +l+ ++++le++++ +e+++ + T263457_3 1527 RWMENDFDELREEGFRRSNYSELKEEVRTHGKEVKNFEKRLEEWLTRMTNAEKSLNNLMELKTTTQELRDECTSLSSRFDQLEERVSVMEDQMIE 1621 68899************************************************************************************999876 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 4.9 5.8e-07 0.0032 3 71 .. 1546 1619 .. 1545 1639 .. 0.79 2 ? -3.5 0.1 2.7 1.5e+04 6 25 .. 2324 2343 .. 2323 2356 .. 0.86 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 5.8e-07 Syntaxin-6_N 3 FfevkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknp 71 + e keeV+ k++++ e+ +++w +++ + ++s ++ el+ t++eLr ++ s++ ++Lee v+++e + T263457_3 1546 YSELKEEVRthgKEVKNFEKRLEEWlTRMTNAEKSlNNLMELKTTTQELRDECTSLSSRFDQLEERVSVMEDQM 1619 5677788863346899999999***6588888888889*****************************9997743 PP == domain 2 score: -3.5 bits; conditional E-value: 2.7 Syntaxin-6_N 6 vkeeVqkslnkleslyrrwe 25 ++++ +++ln+++++ r+w T263457_3 2324 IQDQTDSQLNSTRGTRRSWY 2343 57888999**********94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 709 (0.0434809); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:00.83 # Mc/sec: 10840.13 // Query: T381592_1 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 8904.84 // Query: T381592_2 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.8 0.0 0.039 14.0 0.0 1.3 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 2.4e-06 0.039 18 53 .. 1253 1288 .. 1248 1292 .. 0.89 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.4e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381592_2 1253 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1288 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 9436.47 // Query: T381592_3 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 9436.47 // Query: T221961_1 [L=3321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.68 # Mc/sec: 13971.79 // Query: T221961_2 [L=3320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.28s 00:00:01.43 Elapsed: 00:00:00.59 # Mc/sec: 16098.23 // Query: T221961_3 [L=3320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:00.72 # Mc/sec: 13191.60 // Query: T124757_1 [L=3926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.74 # Mc/sec: 15177.86 // Query: T124757_2 [L=3926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 15385.78 // Query: T124757_3 [L=3925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.54 # Mc/sec: 20794.00 // Query: T090354_1 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-46 154.8 26.6 3e-38 129.7 13.6 2.5 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.8 5.1 1e-14 1.7e-10 15 56 .. 383 424 .. 380 424 .. 0.95 2 ! 129.7 13.6 1.9e-42 3e-38 1 89 [] 411 498 .. 411 498 .. 0.98 Alignments for each domain: == domain 1 score: 40.8 bits; conditional E-value: 1e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090354_1 383 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 424 567*************************************97 PP == domain 2 score: 129.7 bits; conditional E-value: 1.9e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090354_1 411 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 498 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.48 # Mc/sec: 9095.06 // Query: T090354_2 [L=1526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 8909.44 // Query: T090354_3 [L=1525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 8389.93 // Query: T023854_1 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-14 53.4 0.0 4e-14 52.7 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.7 0.0 2.5e-18 4e-14 2 118 .. 468 581 .. 467 582 .. 0.94 Alignments for each domain: == domain 1 score: 52.7 bits; conditional E-value: 2.5e-18 rve 2 trpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 ++p +wqvD+ +++ ++++++++l+ id++ ++ +a++ + +a+t+i+ l + + + +g p + sD+ + +ka+ ++ + +gi +s++ p+ T023854_1 468 NQPATWWQVDYIgPLP--SWKSQSFVLTGIDTYLGYGFAYPACNA-SAKTTIRGLMKCLTHHHGI-PNSIASDQRIHFMAKAVWQWSRAHGIYWSYHIPH 563 5899********7777..77778**********************.9999999999999999998.********************************** PP rve 101 rpqdnGkvErfnrtlkde 118 +p+ G++E n++lk + T023854_1 564 HPEAAGLIEWWNGLLKSQ 581 ***************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 6615.67 // Query: T023854_2 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 6474.82 // Query: T023854_3 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-14 51.5 0.0 1.1e-13 50.9 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.9 0.0 6.5e-18 1.1e-13 8 106 .. 650 748 .. 644 767 .. 0.92 Alignments for each domain: == domain 1 score: 50.9 bits; conditional E-value: 6.5e-18 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt 106 + + sAg+++ ++ t++pg+t ++p+++++ lp + +l+lp S a+kg++v+ gvid dy+ e+++ l+n +k++ ++gd + +L++ ++ T023854_3 650 PMTLHSAGLEVLVPGGGTLPPGDTRMIPLNRKLRLPPRHFGLLLPLSQQAKKGVTVLAGVIDPDYQDEISILLYNGGKEEYAWNTGDPLGHLLVLPCPM 748 667789****************************************************************************************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 6101.27 // Query: T165410_1 [L=1773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9945.59 // Query: T165410_2 [L=1773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 9570.29 // Query: T165410_3 [L=1772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 9748.83 // Query: T060426_1 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1777 (0.108978); expected 326.1 (0.02) Passed bias filter: 446 (0.0273519); expected 326.1 (0.02) Passed Vit filter: 273 (0.0167423); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.37s 00:00:02.54 Elapsed: 00:00:00.67 # Mc/sec: 8428.77 // Query: T060426_2 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1990 (0.122041); expected 326.1 (0.02) Passed bias filter: 531 (0.0325647); expected 326.1 (0.02) Passed Vit filter: 367 (0.0225071); expected 16.3 (0.001) Passed Fwd filter: 85 (0.00521281); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.43s 00:00:02.93 Elapsed: 00:00:00.76 # Mc/sec: 7426.87 // Query: T060426_3 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1771 (0.10861); expected 326.1 (0.02) Passed bias filter: 512 (0.0313995); expected 326.1 (0.02) Passed Vit filter: 357 (0.0218938); expected 16.3 (0.001) Passed Fwd filter: 101 (0.00619404); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.98u 0.44s 00:00:03.42 Elapsed: 00:00:00.78 # Mc/sec: 7236.43 // Query: T166251_1 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 1972.15 // Query: T166251_2 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1811.86 // Query: T166251_3 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 1885.81 // Query: T210855_1 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 11653.83 // Query: T210855_2 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 11230.06 // Query: T210855_3 [L=2158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.53 # Mc/sec: 11648.44 // Query: T012234_1 [L=3577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-26 92.6 6.6 5.7e-25 87.8 2.1 2.5 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.02 14.4 0.3 0.045 13.3 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.2 0.00043 3.5 308 334 .. 408 434 .. 405 442 .. 0.88 2 ! 87.8 2.1 7e-29 5.7e-25 166 271 .. 1730 1834 .. 1728 1836 .. 0.95 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00043 TT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidk 334 kkf Pr+ y k+ + +Geik f d T012234_1 408 KKFYPRIAYLVKIFYKHEGEIKAFPDT 434 89**********************995 PP == domain 2 score: 87.8 bits; conditional E-value: 7e-29 HHHHHHHHHHHHHHHHHHHHHHT.TTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS CS Transposase_22 166 vkerekrkkileqslqviqdtvk.rPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk 257 +k ++k +++ eqslq++ d+vk nlr+i ++e+e e+ k lenil iieenf l ++++ +iqe++r ++ kr+s+rhi++r++k T012234_1 1730 TKTKKKSIRKYEQSLQEVLDYVK*S-NLRIISIPEEE-ENSKSLENILGGIIEENFSGLVRDLDSQIQEAQRILGKFIAKRSSPRHIVIRLSK 1820 58999*****************666.9*******966.799**************************************************** PP HHHHHHHHHHHHHH CS Transposase_22 258 vlnkdkilkavrek 271 v++k++il+av +k T012234_1 1821 VKTKERILRAVIQK 1834 **********9776 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.3 5.5e-06 0.045 9 19 .] 3225 3235 .. 3223 3235 .. 0.91 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 5.5e-06 DUF1725 9 LEnIILSEisQ 19 LE+IILSE++Q T012234_1 3225 LETIILSEVTQ 3235 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1250 (0.0766589); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.62 # Mc/sec: 16505.14 // Query: T012234_2 [L=3576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-38 131.5 1.9 2.4e-29 102.3 0.3 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.1 7.4e-11 1.2e-06 93 187 .. 1072 1176 .. 1065 1193 .. 0.83 2 ! 102.3 0.3 1.5e-33 2.4e-29 47 208 .. 2526 2702 .. 2521 2719 .. 0.89 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 7.4e-11 G-EEET.........................TEEEEESB-.-ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH. CS RVT_1 93 tafkvptklinliksflstrsfsvrvngeesegryekkgl.pqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee. 179 ++++++ + +n+ik+++s ++s+ +n+e+ + ++ g+ + G+ lSPll n++++ l r ++++ k+v+l+++aD +l++ +++++ T012234_2 1072 KKLGTEGTYLNTIKAIYSRHTASIMLNWEKLKAFPLRFGT*K-GWLLSPLLLNIVLDVLARAIKQEKeikgiqirkKEVKLSLFADNMLLYLEKPKDs 1168 56778888899*****************98788887766666.9*********************99***************************7774 PP HHHHHHHH CS RVT_1 180 lqelleav 187 +++lle + T012234_2 1169 IKKLLELI 1176 55555443 PP == domain 2 score: 102.3 bits; conditional E-value: 1.5e-33 HH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHH CS RVT_1 47 pgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 + + ++ ++++++ + k+k+++++++D kkaFd++++++ +++l +++++ + +n+ik+++ ++++ + +nge+ + + +g++qG +lSP T012234_2 2526 TRDAGWFNIrksiNVIHHIKRIKNKNHTIISIDAKKAFDKIQHPFMIKTLSKISIQGTYLNVIKAIYDKPTADIILNGEKLKAFRLRTGTRQGYPLSP 2623 55555555566658888998889999*****************************************************99***************** PP HHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHH.TT--BEGGG-EEE.. CS RVT_1 141 llfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlke.sglkinpeKtklvlf 208 llfn++++ l r +r+ ++v+l++ aD ++i+ +++++ +lle v+e+ ++ sg++in +K+ ++l+ T012234_2 2624 LLFNIVLEVLARAIRQGKeikgiqigkEKVKLSLLADNMIIYLENPKDfSRKLLELVKEFSSKvSGYNINVHKSVALLY 2702 ****************99***************************8885788888899998889**********99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1340 (0.0821783); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.62 # Mc/sec: 16500.53 // Query: T012234_3 [L=3576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-26 91.7 16.9 1.2e-19 70.3 0.0 3.7 4 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 7.5e-10 1.2e-05 270 301 .. 371 402 .. 369 403 .. 0.94 2 ? -8.5 5.4 1 1.6e+04 54 83 .. 861 890 .. 806 902 .. 0.51 3 ! 8.6 0.7 4.2e-05 0.68 136 175 .. 1700 1738 .. 1686 1739 .. 0.83 4 ! 70.3 0.0 7.4e-24 1.2e-19 269 336 .. 1832 1899 .. 1823 1918 .. 0.90 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 7.5e-10 HHS-EEETTEEEEEEE---HHHHHHHHHHHHH CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlkarrewtdv 301 +k ++t+kG Pirl+ ++s e l++rrew d+ T012234_3 371 QKKQITYKGAPIRLAGNFSVEILQTRREWQDL 402 689**************************985 PP == domain 2 score: -8.5 bits; conditional E-value: 1 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 54 kdfykelkelieskakelealkekeentek 83 kd+ ke k + + k++ e +ke++ + +k T012234_3 861 KDMSKERKKQERKKGRKKERKKERKKERKK 890 223333333333333333333333222222 PP == domain 3 score: 8.6 bits; conditional E-value: 4.2e-05 ....XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 136 tidaslssrideleervsaaedeieeidrevkerekrkki 175 + sls+ri+++ er s + d++ e+ k +ek+ k+ T012234_3 1700 A-LVSLSNRIEQVKERNSELKDKVFELTPSNKDKEKKHKK 1738 3.369*****************************998875 PP == domain 4 score: 70.3 bits; conditional E-value: 7.4e-24 HHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEET.TTEEEEESSSSEEEESSHHH CS Transposase_22 269 rekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrlly.PaklsiiidGeikvfidktk 336 e +vt+kGkP rltad+saetl+ar w++++++lk++++qPr+ P klsii +G i+ f k+k T012234_3 1832 TEAPQVTYKGKPNRLTADFSAETLQARMGWGPIFNLLKQNNYQPRI-L*PVKLSIIYEGKIRSFSGKQK 1899 5778*****************************************8.8999***************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1218 (0.0746964); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.28u 0.29s 00:00:01.57 Elapsed: 00:00:00.59 # Mc/sec: 17339.54 // Query: T235952_1 [L=6966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.35s 00:00:01.90 Elapsed: 00:00:00.65 # Mc/sec: 30659.30 // Query: T235952_2 [L=6965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.32s 00:00:01.85 Elapsed: 00:00:00.64 # Mc/sec: 31133.88 // Query: T235952_3 [L=6965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.33s 00:00:01.79 Elapsed: 00:00:00.62 # Mc/sec: 32138.20 // Query: T337286_1 [L=2859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 14871.11 // Query: T337286_2 [L=2859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.59 # Mc/sec: 13862.90 // Query: T337286_3 [L=2859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.4 9.7 1.2 8.8 2.6 2.6 2 PBAN Pheromone biosynthesis activating neuropeptide (PBA Domain annotation for each model (and alignments): >> PBAN Pheromone biosynthesis activating neuropeptide (PBAN) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 2.6 7.6e-05 1.2 92 162 .. 184 250 .. 156 267 .. 0.49 2 ? 8.7 2.2 7.9e-05 1.3 91 162 .. 251 318 .. 246 335 .. 0.74 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 7.6e-05 PBAN 92 ftpklgralakdqtseslefiprlgrklsedtpatsadeesiqpdaieaerrtryfsprlgrtlsfsprlg 162 ftp++ r+ d + + f+prl r +ed p+ + +++ +r+ f+prl rt +f r g T337286_3 184 FTPRITRTE--DLPTRAGVFTPRLTR--TEDFPTRAGVFTPRLTRTEDFPTRAGVFTPRLTRTEDFPTRAG 250 444444443..222333334444444..2444444443333333444444444444444444444433333 PP == domain 2 score: 8.7 bits; conditional E-value: 7.9e-05 PBAN 91 iftpklgralakdqtseslefiprlgrklsedtpatsadeesiqpdaieaerrtryfsprlgrtlsfsprlg 162 +ftp+l r+ d + + f+prl r +ed p+ + +++ +r+ f+prl rt +f r g T337286_3 251 VFTPRLTRTE--DFPTRAGVFTPRLTR--TEDFPTRAGVFTPRLTRTEDFPTRAGVFTPRLTRTEDFPTRAG 318 7888888887..555666678999988..5888888877766666788888899999999999888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.27s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 15432.29 // Query: T381576_1 [L=1491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 8048.11 // Query: T381576_2 [L=1491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8363.72 // Query: T381576_3 [L=1491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 8202.88 // Query: T197485_1 [L=2696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.017 13.8 70.4 0.025 13.2 70.4 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 70.4 1.5e-06 0.025 105 229 .. 785 903 .. 775 932 .. 0.66 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.5e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS MIP-T3 105 sgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekss 204 +++++e++ke +k+e+kk+++ke++ ker+++e + ek r++++e +ke++k+ k+r++ekere e+++er +++kkk +k++ +e+e+++++++ T197485_1 785 QKRKKERKKERRKKERKKERKKERR--KERRKEERKREKERERKREGKKEREKERGKERKREKEREGERKRERGEEKKKK----KKERVRERERERKRER 878 5666677777777777777777766..44444555566666666666666666666666666666666666665555543....5666667777777777 PP XXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 205 ksesgkeeerskdeerekeadkgkd 229 k+e++ke++r+k++er+ke+++ + T197485_1 879 KREGKKEKKRKKERERKKEKKETIA 903 7777777777777777777666544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1901 (0.116583); expected 326.1 (0.02) Passed bias filter: 547 (0.0335459); expected 326.1 (0.02) Passed Vit filter: 336 (0.0206059); expected 16.3 (0.001) Passed Fwd filter: 77 (0.00472219); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.80u 0.42s 00:00:03.22 Elapsed: 00:00:00.75 # Mc/sec: 10283.73 // Query: T197485_2 [L=2695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1564 (0.0959156); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 226 (0.0138599); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.37s 00:00:02.66 Elapsed: 00:00:00.81 # Mc/sec: 9518.44 // Query: T197485_3 [L=2695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1863 (0.114252); expected 326.1 (0.02) Passed bias filter: 542 (0.0332393); expected 326.1 (0.02) Passed Vit filter: 384 (0.0235496); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.66u 0.46s 00:00:04.12 Elapsed: 00:00:01.06 # Mc/sec: 7273.53 // Query: T123585_1 [L=4085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.35s 00:00:01.93 Elapsed: 00:00:00.68 # Mc/sec: 17186.02 // Query: T123585_2 [L=4085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.40s 00:00:01.89 Elapsed: 00:00:00.74 # Mc/sec: 15792.55 // Query: T123585_3 [L=4084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 15.0 0.4 26 4.9 0.0 4.8 5 Imm35 Immunity protein 35 Domain annotation for each model (and alignments): >> Imm35 Immunity protein 35 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.11 1.9e+03 6 38 .. 138 166 .. 136 167 .. 0.87 2 ? -0.6 0.0 0.083 1.3e+03 22 42 .. 197 217 .. 189 218 .. 0.81 3 ? 2.2 0.0 0.012 1.9e+02 6 42 .. 434 466 .. 422 468 .. 0.81 4 ? -0.7 0.0 0.091 1.5e+03 9 42 .. 865 894 .. 851 897 .. 0.78 5 ? 4.9 0.0 0.0016 26 5 42 .. 944 977 .. 940 983 .. 0.90 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.11 Imm35 6 kaeewLrraygpdralrvapekvdelergWlfa 38 +a ++Lr+a++ rv+ + +++gW+ + T123585_3 138 RADDFLRDADEE----RVDDSFRTQMRDGWMIP 166 788999999995....79************875 PP == domain 2 score: -0.6 bits; conditional E-value: 0.083 Imm35 22 rvapekvdelergWlfaynte 42 rv+ + + +++gW+ ++ t+ T123585_3 197 RVDDSFQTQMRDGWMTSFRTQ 217 8999************99985 PP == domain 3 score: 2.2 bits; conditional E-value: 0.012 Imm35 6 kaeewLrraygpdralrvapekvdelergWlfaynte 42 +a ++L +a+++ rv+ + +++gW+ +++t+ T123585_3 434 RADDFLPDADEG----RVDDSFRTQMRDGWMTSFQTQ 466 455566666654....89*****************96 PP == domain 4 score: -0.7 bits; conditional E-value: 0.091 Imm35 9 ewLrraygpdralrvapekvdelergWlfaynte 42 ++L +a+++ r + + +++gW+ +++t+ T123585_3 865 DFLPDADEG----RADDSFRTQMRDGWMTSFQTQ 894 555555553....5688889999*********96 PP == domain 5 score: 4.9 bits; conditional E-value: 0.0016 Imm35 5 akaeewLrraygpdralrvapekvdelergWlfaynte 42 ++a ++Lr+a++ rv+ + +++gW+ +++t+ T123585_3 944 ERADDFLRDADEE----RVDDSFRTQMRDGWMTSFQTQ 977 5899999999995....79*****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:00.79 # Mc/sec: 14789.40 // Query: T124782_1 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.28s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 16175.81 // Query: T124782_2 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:00.82 # Mc/sec: 11638.69 // Query: T124782_3 [L=3335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.65 # Mc/sec: 14678.26 // Query: T022815_1 [L=2728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.65 # Mc/sec: 12006.68 // Query: T022815_2 [L=2727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 19.1 0.3 2.1 8.9 0.2 2.7 2 Ig_3 Immunoglobulin domain 0.0077 16.2 0.0 0.018 15.1 0.0 1.5 1 V-set Immunoglobulin V-set domain ------ inclusion threshold ------ 0.06 13.3 0.0 1.4 8.9 0.0 2.7 3 I-set Immunoglobulin I-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.4 0.0 0.0012 6.3 28 73 .. 236 273 .. 221 278 .. 0.75 2 ! 8.9 0.2 0.00039 2.1 18 42 .. 315 342 .. 300 376 .. 0.73 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0012 ES--EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEE CS Ig_3 28 nppptitWykngkklssnstsssissegssssLtisnvtksdsGtY 73 ++p tW+k + k ++ + ++ s ssL+i+n+ ++dsG+Y T022815_2 236 ADSP--TWLKLQDKFKQ---R---VHVPSMSSLRIENLAPEDSGQY 273 4455..68887774222...3...468899**************** PP == domain 2 score: 8.9 bits; conditional E-value: 0.00039 -EEE----EEES--.EEEEEE..-.... CS Ig_3 18 svtLtCeaegnppp.titWykngkk..l 42 +vtL+C+a g + ++tW +g l T022815_2 315 NVTLECRAPGATEDlNVTWESKGLLreL 342 8*******9999999******9996532 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 3.3e-06 0.018 28 101 .. 213 287 .. 186 293 .. 0.76 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 3.3e-06 CSEEEEEEEETTSCEEEEEEEETT.TEEEEES.TTTEEEEEETTTTEEEEEESSESGGG-EEEEEEE.ESSSEEEEE CS V-set 28 slsiyWyrqppgkepeelilyysn.sskegkk.kgrfslrgdpsrsdfsLtiqnlqlsDsGtYfCav.vssgegvfg 101 ++ W ++ +++l+ ++s +s++ k +++f+ r s sL+i+nl ++DsG Yf ++ +++geg f+ T022815_2 213 LEEVLWALGTLT-DHTQLLRVRSGaDSPTWLKlQDKFKQRV-HVPSMSSLRIENLAPEDSGQYFANItSTKGEGIFQ 287 567889998888.6667777776677777777788888888.78889*****************9986666666554 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 0.0 0.00025 1.4 37 80 .. 244 282 .. 233 290 .. 0.74 2 ? -0.1 0.0 0.17 9e+02 18 38 .. 316 337 .. 314 359 .. 0.88 3 ? -1.6 0.0 0.49 2.7e+03 16 38 .. 1024 1046 .. 1011 1052 .. 0.83 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00025 TTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSE CS I-set 37 dgselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsag 80 + + k+ rv+v + ++L+I+n ++D+G+Y ++t g T022815_2 244 LQDKFKQ--RVHVP---SMSSLRIENLAPEDSGQYFANITSTKG 282 4444442..44443...456***************999887766 PP == domain 2 score: -0.1 bits; conditional E-value: 0.17 EEEEEEEECS.SS-EEEEEETT CS I-set 18 velectveGe.pepsvsWakdg 38 v+lec++ G ++++v+W ++g T022815_2 316 VTLECRAPGAtEDLNVTWESKG 337 89******98799*****9886 PP == domain 3 score: -1.6 bits; conditional E-value: 0.49 S-EEEEEEEECSSS-EEEEEETT CS I-set 16 esvelectveGepepsvsWakdg 38 ++v++ + v+ p s+ W k++ T022815_2 1024 STVRFIIIVQARPLRSFDWRKQQ 1046 7899****************984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.12u 0.30s 00:00:01.42 Elapsed: 00:00:00.69 # Mc/sec: 11306.50 // Query: T022815_3 [L=2727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.30s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 11306.50 // Query: T110831_1 [L=2590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.61 # Mc/sec: 12146.80 // Query: T110831_2 [L=2590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.066 13.0 0.2 0.11 12.3 0.2 1.3 1 DUF788 Protein of unknown function (DUF788) Domain annotation for each model (and alignments): >> DUF788 Protein of unknown function (DUF788) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.2 6.8e-06 0.11 114 166 .. 991 1051 .. 982 1052 .. 0.73 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 6.8e-06 DUF788 114 nkfWllylvvPayalYklwgllkpfl........kaeaeqaeeeeeeeaksKrqeKlekrg 166 +++W+++ v+Pa++ +ll++++ ++++ + +++e++++k+K++++l +rg T110831_2 991 SWVWWCIPVIPAMGWLRQDNLLNQVVgscserrsRHSTLAWQQSETPSQKKKKKKRLARRG 1051 69**********9877777*****9899999864223344445555566666666677765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.72 # Mc/sec: 10291.04 // Query: T110831_3 [L=2589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 13716.09 // Query: T125444_1 [L=722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 3082.86 // Query: T125444_2 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 3078.59 // Query: T125444_3 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3173.32 // Query: T128944_1 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.66 # Mc/sec: 1595.13 // Query: T128944_2 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.67 # Mc/sec: 1571.32 // Query: T128944_3 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.65 # Mc/sec: 1619.67 // Query: T355713_1 [L=2308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.69 # Mc/sec: 9569.27 // Query: T355713_2 [L=2308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 9569.27 // Query: T355713_3 [L=2307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 9295.68 // Query: T206414_1 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1004 (0.0615724); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 134 (0.00821783); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.42s 00:00:02.00 Elapsed: 00:00:00.88 # Mc/sec: 4297.75 // Query: T206414_2 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1316 (0.0807065); expected 326.1 (0.02) Passed bias filter: 608 (0.0372869); expected 326.1 (0.02) Passed Vit filter: 268 (0.0164357); expected 16.3 (0.001) Passed Fwd filter: 119 (0.00729793); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.55s 00:00:02.76 Elapsed: 00:00:00.93 # Mc/sec: 4066.69 // Query: T206414_3 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3314 (0.203238); expected 326.1 (0.02) Passed bias filter: 955 (0.0585674); expected 326.1 (0.02) Passed Vit filter: 737 (0.0451981); expected 16.3 (0.001) Passed Fwd filter: 124 (0.00760456); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.48s 00:00:03.83 Elapsed: 00:00:00.97 # Mc/sec: 3898.99 // Query: T138444_1 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 832 (0.0510242); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 8939.06 // Query: T138444_2 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.69 # Mc/sec: 8939.06 // Query: T138444_3 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 10106.70 // Query: T210806_1 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.27s 00:00:01.30 Elapsed: 00:00:00.77 # Mc/sec: 8968.89 // Query: T210806_2 [L=2413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 10303.26 // Query: T210806_3 [L=2413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.60 # Mc/sec: 11505.30 // Query: T023138_1 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.52 # Mc/sec: 1408.41 // Query: T023138_2 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 1436.02 // Query: T023138_3 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.55 # Mc/sec: 1331.59 // Query: T106421_1 [L=1830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 7932.30 // Query: T106421_2 [L=1830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 7813.91 // Query: T106421_3 [L=1829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 8049.94 // Query: T382380_1 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 3666.63 // Query: T382380_2 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4225.23 // Query: T382380_3 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4308.07 // Query: T227453_1 [L=2534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.78 # Mc/sec: 9294.03 // Query: T227453_2 [L=2534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.77 # Mc/sec: 9414.73 // Query: T227453_3 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 9926.69 // Query: T277873_1 [L=1963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.72 # Mc/sec: 7799.74 // Query: T277873_2 [L=1963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 661 (0.0405372); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.68 # Mc/sec: 8258.54 // Query: T277873_3 [L=1962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 714 (0.0437876); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.65 # Mc/sec: 8635.31 // Query: T227871_1 [L=3230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.66 # Mc/sec: 14000.73 // Query: T227871_2 [L=3230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.56 # Mc/sec: 16500.86 // Query: T227871_3 [L=3230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.31s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 11846.77 // Query: T265407_1 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 6679.42 // Query: T265407_2 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 7555.41 // Query: T265407_3 [L=1611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 9601.66 // Query: T359274_1 [L=3022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-25 89.4 23.1 4.2e-16 58.3 0.5 4.0 3 Fibrinogen_BP Fibrinogen binding protein Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.5 8.6e-09 0.00014 45 144 .. 66 165 .. 59 186 .. 0.26 2 ! 58.3 0.5 2.6e-20 4.2e-16 61 297 .. 462 700 .. 432 704 .. 0.40 3 ! 22.3 3.3 2.1e-09 3.5e-05 75 277 .. 908 1110 .. 898 1129 .. 0.29 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 8.6e-09 Fibrinogen_BP 45 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqg 140 n le ++d ++ + e rd vl+ rd+ vle rd + vle rd vle rd T359274_1 66 NCLESYEKDKHSETSSSIQEPYVRDKHSDNSRIVLDSDVRDIHSENSRSVLESYVRDKHSDRRSSVLEFFMRDKHSDPHSSVLESYVRDNHSDHSR 161 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 PP Fibrinogen_BP 141 nvle 144 vle T359274_1 162 SVLE 165 1111 PP == domain 2 score: 58.3 bits; conditional E-value: 2.6e-20 Fibrinogen_BP 61 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqg 156 vle d + vl+ r+ + vle r v+e r+ nvl+ rd + vle rd + T359274_1 462 SVLESYVMDKDLDHSSRVLKSYVRNKHSDPRSRVLESYVRYKHSDNSSSVMEFYVRNKRSDPHSNVLDSYVRDRHSDNRSSVLESYVRDKHSDTSS 557 333333333333333344444444444444444444443333333333444444444444444444444333333333333444444444444444 PP Fibrinogen_BP 157 nvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqg 252 vle rd + vle d ++ nvle r+ + + vle d vle rd+ + vle + T359274_1 558 SVLESYVRDKHTNKSESVLESYVADKHSDARHNVLEFYVREKQSEPNSSVLESYVTDIHVDPSSSVLESYVRDSHSDPRSSVLEFCVKHKLSDPHS 653 444444444433333344444444444444444444444444444444444444444444444444444444444444444444444444444444 PP Fibrinogen_BP 253 nvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrd..aenk 297 vle rd vle r+ s+ vle rd ++n+ T359274_1 654 SVLESYVRDNHPGHSRSVLESPVRNKRSDSRSSVLECYVRDkhSDNR 700 44444444444444444444444444444444444433322112233 PP == domain 3 score: 22.3 bits; conditional E-value: 2.1e-09 Fibrinogen_BP 75 qgnvler..rqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenr..sqgnvlerrqr 164 +g vle r++ ++n+s vle r+ vle rd + vle r+ vle +n+ s v+e r T359274_1 908 RGCVLES*vRDKHSDNHS--SVLESHVREKHSDPPSSVLESYVRDKHSDKRSSVLETYVREKHSNNTEIVLESYVT--DNH**SLHSVMEFYVR 997 222222111222222222..22333333222222233333333333333333333333332222222222222221..1222222223332222 PP Fibrinogen_BP 165 daenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrd.aenrsqgnvlerrqrdaenksqgnvler 257 + + v e rd+ vle rd vl+ r+ + v e +r+ ++s+ vle ++ + nvle T359274_1 998 EKHTEPSSSVPETYVRDSHSDHGRIVLESHVRDKHSEHSRSVLDSYVRNKHSEPRDSVRESYRRN*HSEHSR-SVLESYVKNKHSDPRSNVLES 1090 222222223333333333322222233333333332222233332222222222222222222222222221.223332222222222333333 PP Fibrinogen_BP 258 rqrdaenrsqgnvlerrqrd 277 +d + vle rd T359274_1 1091 YVKDKHSDDRSSVLESNVRD 1110 33332222222233322222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.53 # Mc/sec: 16312.13 // Query: T359274_2 [L=3022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-14 53.4 1.2 1.7e-07 29.9 0.2 2.8 3 Fibrinogen_BP Fibrinogen binding protein Domain annotation for each model (and alignments): >> Fibrinogen_BP Fibrinogen binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 0.017 2.8e+02 143 196 .. 4 57 .. 1 76 [. 0.26 2 ! 29.9 0.2 1e-11 1.7e-07 87 257 .. 218 388 .. 195 407 .. 0.26 3 ! 20.3 0.3 8.6e-09 0.00014 55 168 .. 1240 1353 .. 1222 1390 .. 0.28 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.017 Fibrinogen_BP 143 lerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqr 196 le d + vle r+ + le d+ vle r T359274_2 4 LESYVMDKHSDAHCSVLELYVREEHSEPSSSFLESYMMDIHVDPSSSVLESHVR 57 111111111111111111111111111111111111111111111111111111 PP == domain 2 score: 29.9 bits; conditional E-value: 1e-11 Fibrinogen_BP 87 enrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrda 182 + vle rd + le r+ + vl rd + vle d +le r vle rd T359274_2 218 LSETSSGVLENYVRDKDSGQSRYALEFYVRNELSEYCRSVLVSYVRDKHSDPRSSVLESHVIDKHSDHSRSILESPVRIQHSDPHTSVLESYVRDK 313 112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP Fibrinogen_BP 183 enksqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvler 257 nvle r+ + vle rd vle rd vl+ r+ + nvle T359274_2 314 HLDPSSNVLESYVRNKHSDPRSSVLESYVRDKHSEPSSSVLELCMRDKHSEHGRIVLQSYVREKPSENHRNVLES 388 222222222222222222222222222222222222222222222222222222222222222222222222221 PP == domain 3 score: 20.3 bits; conditional E-value: 8.6e-09 Fibrinogen_BP 55 enrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenrsqgnvlerrqrdaenksqgnvlerrqrdaenrsqgnvlerrqr 148 ++ vle rd vle d s vle rd + + vle d + + +e +r+ + vle T359274_2 1240 HSHTLRRVLESYVRDKHSDNSSSVLESSVSDKHSESSSSVLESNVRDKHLNNRRGVLESYVTDKHSEPRRSAMEFYEREKQSEPSSSVLESHVT 1333 1111112222222222222222222222222222222222222222222111122222222222222222222222222222222222222222 PP Fibrinogen_BP 149 daenrsqgnvlerrqrdaen 168 d+ vl rd T359274_2 1334 DIHIDPSSSVLGSYVRDKHS 1353 22222222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.53 # Mc/sec: 16312.13 // Query: T359274_3 [L=3021] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3021 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.61 # Mc/sec: 14168.14 // Query: T317201_1 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:00.45 # Mc/sec: 8633.35 // Query: T317201_2 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 7764.29 // Query: T317201_3 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 6693.36 // Query: T033517_1 [L=3434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-30 104.1 1.0 9.8e-18 64.3 0.1 2.2 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.056 13.7 0.4 0.1 12.8 0.4 1.4 1 UPF0184 Uncharacterised protein family (UPF0184) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.1 1.1e-13 9e-10 1 58 [. 1389 1455 .. 1389 1459 .. 0.89 2 ! 64.3 0.1 1.2e-21 9.8e-18 87 208 .. 1484 1615 .. 1481 1641 .. 0.90 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 1.1e-13 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.............. CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eel 58 ipK+g +++yRpisl+++ k+lnk++a++++++++k+++++q+gf pg + + ++ +++ T033517_1 1389 IPKPGkdvtkKENYRPISLTNTEAKILNKILANQIQQHIKKIIHHDQVGFIPGMQGWFNIckpiNVI 1455 899999999999*****************************************99888887554444 PP == domain 2 score: 64.3 bits; conditional E-value: 1.2e-21 GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + ++ l +++++ + +n+ik+++ ++++++ +nge+ +g++ ++qG++lSPl fn++++ l r +r++ ++v+l+++a D++++ + T033517_1 1484 FMIKILSKIGIQGTYLNVIKAVYDKPTANIILNGEKLKGFPLRIKTRQGCPLSPLPFNIVLEVLARAIRQEEeikgiqiskEEVKLSLFAADMIVYLE 1581 5678899999*************************99*********************************99************************** PP SHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 176 skee.lqelleaveewlkesglkinpeKtklvlf 208 ++++ +ll+ ++e+ k sg+kin +K+ ++l+ T033517_1 1582 NPKDsSRNLLQLIREFSKVSGYKINVQKSVAFLT 1615 *666599************************976 PP >> UPF0184 Uncharacterised protein family (UPF0184) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.4 1.3e-05 0.1 32 66 .. 505 539 .. 500 545 .. 0.91 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.3e-05 UPF0184 32 nsmLDqinsaLDalEernDdlnskLrELlesnRqi 66 + L+ ++s ++++Eern +l+ k+ EL +sn++ T033517_1 505 QNALESLSSRIEQIEERNSELKDKVFELTQSNKDK 539 5899****************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 705 (0.0432356); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.60 # Mc/sec: 16373.48 // Query: T033517_2 [L=3433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-60 205.0 9.8 3.2e-60 203.8 9.8 1.6 1 Transposase_22 L1 transposable element 0.0011 18.7 0.2 0.003 17.3 0.2 1.8 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.043 13.4 0.3 0.34 10.5 0.2 2.4 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 203.8 9.8 5.9e-64 3.2e-60 166 335 .. 536 704 .. 469 705 .. 0.95 Alignments for each domain: == domain 1 score: 203.8 bits; conditional E-value: 5.9e-64 HHHHHHHHHHHHHHHHHHHHHHT.TTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 166 vkerekrkkileqslqviqdtvk.rPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 +k ++krk++ eq+l ++ d+vk nlr+i v+e+e e+ k leni++ ii+enfP l+++++++iqe++r+P+++ skr+s+rhi++r++kv+ T033517_2 536 TKIKKKRKRKYEQTLEEVGDYVK*L-NLRIISVPEEE-EKSKILENIFQGIIKENFPGLARDVDIQIQEAQRAPRKFISKRSSPRHIVIRLSKVK 628 6899******************776.9*******976.67899**************************************************** PP HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHH CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidkt 335 +k++il+avr+k +vt+k kPirltad+sa tl+arr+w++++ +lk++ +qPr++yP sii +G i+ f dk+ T033517_2 629 MKERILRAVRQKYQVTYKRKPIRLTADFSAGTLQARRDWGPIFSLLKQNSYQPRISYPVTQSIIYEGKIQSFLDKQ 704 ***************************************************************************8 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.2 5.6e-07 0.003 1 68 [. 982 1047 .. 982 1064 .. 0.77 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 5.6e-07 Exo_endo_phos_2 1 lliisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtdskergeeLidfleeh 68 ++i ++Y p++ + + +++ l +l++e++s +iii+GDfN + ++ + ++++++++ +L +le+ T033517_2 982 ITILNIYAPNTG-APKFIKQLLIDLRNETNS-NIIIMGDFNTPLTASDRSRQKVNKETMDLNYTLEQM 1047 6899****9999.777888888888888876.8**********9999987766677777776666555 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.19 1.1e+03 6 15 .. 1709 1718 .. 1709 1718 .. 0.89 2 ? 10.5 0.2 6.2e-05 0.34 6 19 .] 2254 2267 .. 2254 2267 .. 0.99 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.19 DUF1725 6 WMELEnIILS 15 + ELE +IL+ T033517_2 1709 FTELEKTILK 1718 58*******7 PP == domain 2 score: 10.5 bits; conditional E-value: 6.2e-05 DUF1725 6 WMELEnIILSEisQ 19 WM LE+I LSE++Q T033517_2 2254 WMRLETITLSEVTQ 2267 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 751 (0.0460567); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.47u 0.36s 00:00:01.83 Elapsed: 00:00:00.71 # Mc/sec: 13832.72 // Query: T033517_3 [L=3433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.0 5.7 2.3 7.8 5.7 1.6 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 5.7 0.00014 2.3 8 27 .] 3373 3392 .. 3372 3392 .. 0.94 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00014 DUF3704 8 FGYMPksgIAGSSdSimsnF 27 FGY P+sg AGS ++++ nF T033517_3 3373 FGYSPRSGTAGSYSNSIFNF 3392 9***********99999888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.66 # Mc/sec: 14880.65 // Query: T258761_1 [L=331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 1753.58 // Query: T258761_2 [L=331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.49 # Mc/sec: 1932.52 // Query: T258761_3 [L=330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 1815.53 // Query: T305698_1 [L=1945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 538 (0.032994); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 9121.83 // Query: T305698_2 [L=1945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1945 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 614 (0.0376549); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.49 # Mc/sec: 11355.74 // Query: T305698_3 [L=1944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 13.6 7.9 0.05 12.9 7.9 1.2 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 7.9 3e-06 0.05 196 325 .. 1033 1233 .. 1026 1236 .. 0.44 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3e-06 Plasmodium_Vir 196 npkkllsklsCknk............................................................................... 209 n+k+ l+klsC+ + T305698_3 1033 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfs 1125 666667777777666777777777777777777777777777777777777777777777777777777777777777777665555555443 PP Plasmodium_Vir 210 .....spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvse 296 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ T305698_3 1126 sssssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSS 1205 222211.....111111111111111111111111111111........11111111211111222222222222222222222222222222 PP Plasmodium_Vir 297 elssnfirniimaaailgtgiflfsylly 325 +ss + + + a+++ + ++ fsy+ly T305698_3 1206 SSSSSSSPSPS-SASASAASFSSFSYFLY 1233 22222222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1142 (0.0700356); expected 326.1 (0.02) Passed bias filter: 435 (0.0266773); expected 326.1 (0.02) Passed Vit filter: 263 (0.016129); expected 16.3 (0.001) Passed Fwd filter: 70 (0.0042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.58u 0.41s 00:00:02.99 Elapsed: 00:00:00.77 # Mc/sec: 7222.67 // Query: T089226_1 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 2969.34 // Query: T089226_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 2919.02 // Query: T089226_3 [L=601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-07 30.7 0.0 5.5e-07 29.7 0.0 1.5 1 rve Integrase core domain ------ inclusion threshold ------ 0.01 15.4 0.0 0.022 14.4 0.0 1.5 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 0.0 6.7e-11 5.5e-07 54 117 .. 32 94 .. 30 96 .. 0.90 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 6.7e-11 rve 54 lleravarfggvepervlsDngseytskafreflael.girvsftrpgrpqdnGkvErfnrtlkd 117 l++ a +++g p+ + sDng++++ ++ + a gi+++++ ++rpq+ Gkv r+nrt+k+ T089226_3 32 LHQDAQMWRFGL-PLPIGSDNGPAFV-ADLVQKTAMV*GITWKLHTTYRPQSSGKVDRMNRTIKN 94 7889999****9.*************.567777788899************************98 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 2.7e-06 0.022 2 31 .. 68 97 .. 68 110 .. 0.89 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.7e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdell 31 gi++++ ++Pq g+v ++n+t+++ l T089226_3 68 GITWKLHTTYRPQSSGKVDRMNRTIKNSLG 97 79************************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 3184.00 // Query: T355542_1 [L=950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-33 115.5 1.5 4.9e-33 114.4 0.1 2.0 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.2 0.04 6.5e+02 178 206 .. 520 550 .. 512 570 .. 0.81 2 ! 114.4 0.1 3e-37 4.9e-33 24 176 .. 769 934 .. 767 948 .. 0.96 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.04 HH..HHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 178 ee..lqelleaveewlkesglkinpeKtklv 206 ++ q+l++++++ ++e + +n++K k T355542_1 520 KDtmYQNLWDTFKAVCREKFIALNAHKRKQE 550 3356899********************8876 PP == domain 2 score: 114.4 bits; conditional E-value: 3e-37 CTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET..................... CS RVT_1 24 kliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvn 119 +++a+r++++++kl++++q+gf pg + l ++ + ++++++ + k+++++++D +kaF +++++++l +l++++++ + +++ ++++ +r+++v n T355542_1 769 SVLANRIQQHIKKLIHHDQVGFIPGMQGLFNIhksiNIIHHIHRTNDKNHMIISIDAEKAFGKIQHHFVLTTLNKLGTDGTYLKIRRAIYDKRTATVITN 868 6899***********************99999*9999999999999999*************************************************** PP ....TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 120 geesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 g++ e ++ k+g++qG++lSPllfn +++ l r +r++ ++v+l+++aDD++++ + T355542_1 869 GQKLEAFPLKTGTRQGCPLSPLLFNTVLEVLARAIRQEKevtgiqlgkEEVKLSLFADDMIVYLED 934 **99*********************************99***********************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 4768.05 // Query: T355542_2 [L=950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-23 82.1 0.2 4.6e-23 81.5 0.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.5 0.2 2.9e-27 4.6e-23 309 367 .. 160 220 .. 157 221 .. 0.97 Alignments for each domain: == domain 1 score: 81.5 bits; conditional E-value: 2.9e-27 T---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 309 kfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +fqPr+ yPakls+i++Geik f +k++lrdy++trPal++llke ++er++ yq+l+++ T355542_2 160 NFQPRIAYPAKLSFISKGEIKSFTEKQMLRDYVTTRPALQELLKEalNMERNNWYQPLQKH 220 8**********************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 4941.43 // Query: T355542_3 [L=949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 5429.86 // Query: T293097_1 [L=1406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 7056.71 // Query: T293097_2 [L=1406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 6284.89 // Query: T293097_3 [L=1405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 79 (0.00484484); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 6183.79 // Query: T276717_1 [L=1922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.61 # Mc/sec: 9013.96 // Query: T276717_2 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 8326.75 // Query: T276717_3 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 9992.10 // Query: T376364_1 [L=6080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.37s 00:00:02.06 Elapsed: 00:00:00.68 # Mc/sec: 25579.19 // Query: T376364_2 [L=6080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6080 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.71 # Mc/sec: 24498.38 // Query: T376364_3 [L=6079] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6079 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.79 # Mc/sec: 22013.91 // Query: T051381_1 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 8986.37 // Query: T051381_2 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.65 # Mc/sec: 9401.13 // Query: T051381_3 [L=2135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 8982.16 // Query: T051382_1 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.71 # Mc/sec: 7272.96 // Query: T051382_2 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.71 # Mc/sec: 7272.96 // Query: T051382_3 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7483.77 // Query: T338183_1 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-16 61.0 0.0 2.1e-16 60.3 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.3 0.0 1.3e-20 2.1e-16 5 142 .. 508 649 .. 505 650 .. 0.82 Alignments for each domain: == domain 1 score: 60.3 bits; conditional E-value: 1.3e-20 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk 99 +Y DGs++ n +ge+gag+ v+ + + ++l++ +++++aEL+A+i L+ + ++++vniytDS+Y++ +++ vh++ k+++ +s +k++k T338183_1 508 ELYMDGSSFINpQGERGAGYaVVTLD-TVVETRSLPQGTSAQKAELIAFIRDLElH--EGKTVNIYTDSRYAFLTFQ--VHGAf*KEKGL-LNSGGKDIK 601 68*********99999****777766.33445667789****************66..9**************9444..79999999999.777777999 PP T.HHHHHH.HHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 100 n.kelael.lkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 e+ + ++++ k++kv ++h +gH+ + gN +aD+ A++ a T338183_1 602 YqPEIL-Q*FEAVWKPHKVAVMHRRGHQRAsnlvGLGNSRADSEAQKSA 649 933333.233568**************655568877*********9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.63 # Mc/sec: 10575.99 // Query: T338183_2 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-17 62.3 0.0 6.5e-17 61.7 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 3.1e-15 56.3 0.0 5.2e-15 55.6 0.0 1.4 1 rve Integrase core domain 5.3e-08 32.9 0.1 2e-07 31.0 0.1 2.1 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.7 0.0 1.2e-20 6.5e-17 1 206 [. 86 247 .. 86 247 .. 0.87 Alignments for each domain: == domain 1 score: 61.7 bits; conditional E-value: 1.2e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+++++yRp+ d+++l +++ l++ + + ++ +++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T338183_2 86 VPKPQTKDYRPV----QDLRLLHQATLT---------LHPAVLNPYTLLGL------------LPAENSCFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 160 69*********7....7***********.........55555555555333............345899*****************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 ++ ++y++++lpqG+++SP++f ++ ++ + + g ll+Y+DD+l+ + +++ +a+ ++l+++g+k++ T338183_2 161 -------------------ESGVITQYTWTRLPQGFKNSPTIFGEALA*DIQKFPTRD-LGYILLQYVDDFLLGHPMAVGCSKGTDALLRRLEDCGYKVS 240 ...................335699*********************977665555544.599************************************** PP GGG-EEE CS RVT_1 200 peKtklv 206 + K +++ T338183_2 241 KRKAQIC 247 ****997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.6 0.0 9.6e-19 5.2e-15 3 118 .. 773 884 .. 771 885 .. 0.95 Alignments for each domain: == domain 1 score: 55.6 bits; conditional E-value: 9.6e-19 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervls.Dngseytskafreflaelgirvsftrpgr 101 +p e +qvD+t+++ + gg++yl v ++s+++ a+++++e +a++v+++l r + ++g ++ Dng+++++ +++ ++ l+i+ ++++++ T338183_2 773 APFEDIQVDFTEMP--KCGGNKYLPVLRSTYSGWVEAYPTRTE-KAHEVTCVLLRDLIPRFGL--PLWIG*DNGPAFVADLVQKTAKVLRITRKLHAAYW 867 78999*********..9999***********************.9999999999999999995..58999****************************** PP rve 102 pqdnGkvErfnrtlkde 118 pq+ Gk Er+nrt+k+ T338183_2 868 PQSSGKLERINRTIKNS 884 **************985 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.0 0.1 3.7e-11 2e-07 3 39 .] 717 753 .. 716 753 .. 0.97 Alignments for each domain: == domain 1 score: 31.0 bits; conditional E-value: 3.7e-11 zf-H2C2 3 ltHlGinkltallarkyhwlgiketvseVissCkaCq 39 tHlG+ l++ll r++++l++++++++V++ C++C+ T338183_2 717 KTHLGQDSLEELLGRYFYILHLSALAKTVTQPCVTCR 753 69**********************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 9253.99 // Query: T338183_3 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 13.6 0.1 0.073 12.6 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 4.5e-06 0.073 3 18 .. 1675 1690 .. 1675 1690 .. 0.91 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.5e-06 DUF1725 3 agKWMELEnIILSEis 18 a++WM+LE+I SEi+ T338183_3 1675 AATWMKLEDIVVSEIK 1690 79********999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.75 # Mc/sec: 8883.83 // Query: T043679_1 [L=2471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 10395.75 // Query: T043679_2 [L=2471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.78 # Mc/sec: 9062.96 // Query: T043679_3 [L=2470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00012 22.2 0.3 0.00023 21.2 0.3 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.3 1.4e-08 0.00023 1 39 [] 620 655 .. 620 655 .. 0.98 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.4e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++l+++++ ++V+ +C++C+ T043679_3 620 HESTHLGQESLKKL---YFYILHLSALGKTVVPQCVTCR 655 9*************...*********************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.27s 00:00:01.32 Elapsed: 00:00:00.79 # Mc/sec: 8944.62 // Query: T353299_1 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3830.83 // Query: T353299_2 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 4625.91 // Query: T353299_3 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 4807.32 // Query: T120600_1 [L=725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1095 (0.0671532); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.66 # Mc/sec: 3142.58 // Query: T120600_2 [L=724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 672 (0.0412118); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 3340.71 // Query: T120600_3 [L=724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 985 (0.0604072); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.68 # Mc/sec: 3045.94 // Query: T326654_1 [L=825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 3933.64 // Query: T326654_2 [L=825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 3746.32 // Query: T326654_3 [L=824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 4533.32 // Query: T234771_1 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.40s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 7118.20 // Query: T234771_2 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:00.79 # Mc/sec: 6847.89 // Query: T234771_3 [L=1890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.76 # Mc/sec: 7114.43 // Query: T031443_1 [L=8039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.43s 00:00:02.86 Elapsed: 00:00:00.94 # Mc/sec: 24466.18 // Query: T031443_2 [L=8039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.1 2.1 3.5 7.4 0.2 4.0 4 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.12 2e+03 42 78 .. 1171 1207 .. 1165 1214 .. 0.75 2 ? 7.4 0.2 0.00022 3.5 43 72 .. 2150 2179 .. 2145 2211 .. 0.62 3 ? 0.2 0.3 0.036 6e+02 49 78 .. 2462 2488 .. 2449 2495 .. 0.49 4 ? -3.9 0.0 0.67 1.1e+04 47 72 .. 2640 2665 .. 2638 2671 .. 0.49 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.12 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaalggv 78 g+ + g+ + g+ + g+ g+ + g + g l g+ T031443_2 1171 GMEWNGMEWNGMDLNGMDSNGMEWNGTEWNGMDLNGI 1207 6667777788888888888888888887777777765 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00022 Lamprin 43 lgygglgygglgvaglgvaglgygglgypg 72 l + g+ + g+g+ g+g g+g+ g+g+ T031443_2 2150 LEWNGMRWDGMGWDGMGWDGMGWDGMGWNR 2179 555555555555555555555555555543 PP == domain 3 score: 0.2 bits; conditional E-value: 0.036 Lamprin 49 gygglgvaglgvaglgygglgypgaalggv 78 y g+g +g+ g+g+ g+ + g g+ T031443_2 2462 EYNGMG---MGMEGMGWDGMEWNGMECNGM 2488 333322...334444444444444444443 PP == domain 4 score: -3.9 bits; conditional E-value: 0.67 Lamprin 47 glgygglgvaglgvaglgygglgypg 72 g+ + g+ + gl g+ + gl + g T031443_2 2640 GMEWNGIEWNGLEWNGMEWNGLEWNG 2665 44444555555555555555554444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.42u 0.42s 00:00:02.84 Elapsed: 00:00:00.89 # Mc/sec: 25840.69 // Query: T031443_3 [L=8039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-05 23.0 0.3 0.00029 20.3 0.3 2.6 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.085 12.7 1.6 2.8 7.7 2.6 3.1 4 Lamprin Lamprin 8.9 6.1 6.2 25 4.6 6.2 1.8 1 Chorion_1 Chorion protein Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.3 5.3e-08 0.00029 1 18 [. 5651 5668 .. 5651 5668 .. 0.93 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 5.3e-08 DUF1725 1 kFagKWMELEnIILSEis 18 +Fa +WM+LE+IILS+ + T031443_3 5651 SFARTWMKLETIILSKLT 5668 7999***********987 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.0 1.3 6.8e+03 42 68 .. 1488 1514 .. 1485 1526 .. 0.54 2 ? 7.7 2.6 0.00052 2.8 40 72 .. 2150 2182 .. 2146 2184 .. 0.66 3 ? -2.0 0.0 0.54 2.9e+03 72 72 .. 2289 2289 .. 2253 2330 .. 0.54 4 ? -2.1 0.0 0.57 3.1e+03 42 72 .. 2510 2540 .. 2503 2545 .. 0.60 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 1.3 Lamprin 42 glgygglgygglgvaglgvaglgyggl 68 gl + g+ + gl + gl g+ + + T031443_3 1488 GLKWNGMEWNGLKWNGLKWNGMEWTRI 1514 455555555555555555555554444 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00052 Lamprin 40 vgglgygglgygglgvaglgvaglgygglgypg 72 + g+g g+g+ g+g+ g+g g+g+ g+ + g T031443_3 2150 LSGMGCDGMGWDGMGWDGMGWDGMGWDGIEWNG 2182 567777777777777777777777777776655 PP == domain 3 score: -2.0 bits; conditional E-value: 0.54 Lamprin 72 g 72 g T031443_3 2289 G 2289 2 PP == domain 4 score: -2.1 bits; conditional E-value: 0.57 Lamprin 42 glgygglgygglgvaglgvaglgygglgypg 72 g+ g+ + gl + g+ g+ + gl + g T031443_3 2510 GMYSNGMEWNGLEWNGMNSNGMEWNGLEWNG 2540 4444566666666666666666666665555 PP >> Chorion_1 Chorion protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 6.2 0.0047 25 34 62 .. 2151 2177 .. 2146 2184 .. 0.51 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0047 Chorion_1 34 dGfGydglgydGlGyGlngrGfgGlgddi 62 +G+G+dg+g+dG+ G++g G+ G+g d+ T031443_3 2151 SGMGCDGMGWDGM--GWDGMGWDGMGWDG 2177 5666666666663..33444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.46u 0.41s 00:00:02.87 Elapsed: 00:00:00.85 # Mc/sec: 27056.72 // Query: T249686_1 [L=4462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.45s 00:00:02.19 Elapsed: 00:00:00.78 # Mc/sec: 16365.41 // Query: T249686_2 [L=4462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.71 # Mc/sec: 17978.91 // Query: T249686_3 [L=4462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.38s 00:00:02.33 Elapsed: 00:00:00.92 # Mc/sec: 13875.03 // Query: T381537_1 [L=2551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 10732.32 // Query: T381537_2 [L=2551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.71 # Mc/sec: 10278.84 // Query: T381537_3 [L=2551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.74 # Mc/sec: 9862.13 // Query: T381569_1 [L=2125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.75 # Mc/sec: 8105.69 // Query: T381569_2 [L=2125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 8327.76 // Query: T381569_3 [L=2125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.87 # Mc/sec: 6987.66 // Query: T248726_1 [L=1906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 8655.15 // Query: T248726_2 [L=1906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 9087.90 // Query: T248726_3 [L=1906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 8388.83 // Query: T236791_1 [L=7230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-09 35.5 0.1 1.7e-08 34.6 0.1 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.1 1.1e-12 1.7e-08 39 138 .. 3070 3172 .. 3055 3172 .. 0.79 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 1.1e-12 CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT.HHHHHHHHHCH.CSSEEEEEE-SCCSSS....C CS RNase_H 39 eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn.kelaellkela.kkkkvqlkhvkgHaGd....p 128 + +++++a L+A+i a++ + +d++vniytDS Y++ +++ vh++ +++ +s +k+ k +e+ +ll e++ k++kv +++++gH+ + T236791_1 3070 QGTSAQKAKLIALIWAIElS--EDKTVNIYTDSWYAFLTLQ--VHGALYKEKGLlNSGGKDTKYqQEILQLL-EAV*KPQKVAVMYCRGHQQSftliA 3162 6799**************55..9**************9555..57765544444266666666645666666.5557689**********87779997 PP HHHHHHHHHH CS RNase_H 129 kgNemaDrlA 138 gN +aD+ A T236791_1 3163 LGNSRADSEA 3172 8******865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.01u 0.38s 00:00:02.38 Elapsed: 00:00:00.76 # Mc/sec: 27215.53 // Query: T236791_2 [L=7230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-27 93.8 1.5 1.8e-25 89.6 0.1 2.2 2 Gag_p30 Gag P30 core shell protein 8.7e-13 47.7 0.5 1.3e-12 47.1 0.5 1.2 1 Transposase_22 L1 transposable element 4.6e-10 39.2 0.0 6.8e-10 38.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.0013 18.3 0.0 0.0031 17.0 0.0 1.6 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.1 0.016 63 16 40 .. 2090 2114 .. 2085 2116 .. 0.92 2 ! 89.6 0.1 4.3e-29 1.8e-25 83 185 .. 2158 2260 .. 2144 2266 .. 0.92 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.016 Gag_p30 16 nnpsfsedpqkltaliesillthqp 40 + ps++++pq+l l+++++ th+p T236791_2 2090 DTPSYTKKPQALMDLLQTVIQTHKP 2114 68**********************9 PP == domain 2 score: 89.6 bits; conditional E-value: 4.3e-29 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdi 180 + +p t +wd + +g ++l+ yr++ll gl+ a++ tn+ kv e +qgk+espa f +rl+eayr+ytp+dp + e++ + ++++ qsa di T236791_2 2158 MRIQLPGTDAEWDPNERQGMQRLNRYRKALLEGLKKGAQKVTNVNKVSEAIQGKDESPAQFYKRLREAYRMYTPFDPSSLENQHMINMALVSQSAEDI 2255 456789999***************************************************************************************** PP Gag_p30 181 rkklq 185 ++ ++ T236791_2 2256 KENFK 2260 *9865 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.1 0.5 3.3e-16 1.3e-12 201 310 .. 4408 4517 .. 4406 4519 .. 0.86 Alignments for each domain: == domain 1 score: 47.1 bits; conditional E-value: 3.3e-16 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236791_2 4408 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 4496 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236791_2 4497 ETL*A-KREWHDIFKELKEKKL 4517 **775.69************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.0 1.7e-13 6.8e-10 122 222 .] 2682 2777 .. 2670 2777 .. 0.91 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 1.7e-13 ..TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEET CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyL 218 + ++++ ++ lpqG+++SP++f ++ +l + + g+ ll Y+DD+l+ + + + + +++ ++l+++g+k+ ++K +++ +++v yL T236791_2 2682 RCHHSVPWTQLPQGFKNSPTIFGGVLA*DLQKFPTRD-LGCLLLEYIDDLLLGHPTAVGCAKGTDTLLQHLEDCGYKVPKKKAQIC-----RQQVSYL 2773 5678999******************988887766665.69**********************************************.....9****** PP TEEE CS RVT_1 219 Gvtl 222 G+t+ T236791_2 2774 GFTI 2777 **97 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 7.7e-07 0.0031 32 62 .. 2002 2032 .. 2000 2036 .. 0.90 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 7.7e-07 HHHHHHHHTTGGGGSSS--TT----HHHHHH CS Gag_MA 32 kklitlCsseWptlnvgWPreGtfdltviak 62 +kl+tlC+ +Wp+l+vgW eG d +++ k T236791_2 2002 GKLRTLCEIDWPALEVGWASEGNLDGSLVFK 2032 699********************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.13u 0.40s 00:00:02.52 Elapsed: 00:00:00.92 # Mc/sec: 22482.39 // Query: T236791_3 [L=7229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 17.0 0.0 0.0046 16.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 2.8e-07 0.0046 1 100 [. 2605 2679 .. 2605 2694 .. 0.81 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 2.8e-07 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 +pK+g+ + R+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+ F+s++l+ +++kl+af+ T236791_3 2605 VPKPGAMDCRLaQ-----DLRLVNQATVT---------LHPVVPNLYTLLGL------------LPAEDSWFTCLDLKDIFFSIRLAPESQKLFAFQW 2676 5788888888855.....99999999999.........88888888888444............55788***************************98 PP T.. CS RVT_1 98 ptk 100 +++ T236791_3 2677 EDP 2679 866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.11u 0.34s 00:00:02.44 Elapsed: 00:00:00.92 # Mc/sec: 22479.28 // Query: T194274_1 [L=4783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.40s 00:00:02.00 Elapsed: 00:00:00.82 # Mc/sec: 16687.01 // Query: T194274_2 [L=4783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.56 # Mc/sec: 24005.88 // Query: T194274_3 [L=4783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.62 # Mc/sec: 22069.92 // Query: T337021_1 [L=3334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.29s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 16444.84 // Query: T337021_2 [L=3334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 16166.11 // Query: T337021_3 [L=3333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 16439.91 // Query: T157214_1 [L=2639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 13481.66 // Query: T157214_2 [L=2639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 13245.14 // Query: T157214_3 [L=2638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.26s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13476.55 // Query: T353808_1 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 7287.02 // Query: T353808_2 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.53 # Mc/sec: 7287.02 // Query: T353808_3 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7427.15 // Query: T129488_1 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 6128.78 // Query: T129488_2 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6128.78 // Query: T129488_3 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.065 13.2 0.0 0.11 12.4 0.0 1.2 1 DUF1325 SGF29 tudor-like domain Domain annotation for each model (and alignments): >> DUF1325 SGF29 tudor-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 6.8e-06 0.11 64 100 .. 417 454 .. 392 465 .. 0.72 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.8e-06 DUF1325 64 skakpesk.laefpkgkkVLAlY.PeTTtFYkAeVvasp 100 +ka+p+ + +a f+k++ LA P+TT+FY+A ++a+ T129488_3 417 WKANPQMDpKALFQKEQLMLA-L*PQTTCFYRALIHAPL 454 555555555666666666555.669***********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6123.28 // Query: T111705_1 [L=5178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.61 # Mc/sec: 24284.23 // Query: T111705_2 [L=5177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.60 # Mc/sec: 24684.19 // Query: T111705_3 [L=5177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.60 # Mc/sec: 24684.19 // Query: T111363_1 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7196.95 // Query: T111363_2 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 6797.12 // Query: T111363_3 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.53 # Mc/sec: 6919.97 // Query: T174787_1 [L=5789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.64 # Mc/sec: 25877.10 // Query: T174787_2 [L=5789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.60 # Mc/sec: 27602.24 // Query: T174787_3 [L=5788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.61 # Mc/sec: 27145.06 // Query: T317335_1 [L=2121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 10835.39 // Query: T317335_2 [L=2121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11032.40 // Query: T317335_3 [L=2120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 10830.28 // Query: T183228_1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3113.26 // Query: T183228_2 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-09 36.6 18.3 3.2e-06 27.0 6.5 2.3 3 Mucin-like Mucin-like ------ inclusion threshold ------ 0.32 11.2 13.2 0.6 10.3 13.2 1.5 1 Pro-rich Proline-rich Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.1 0.96 7.8e+03 76 96 .. 114 134 .. 111 138 .. 0.46 2 ! 27.0 6.5 3.9e-10 3.2e-06 21 98 .. 168 245 .. 166 247 .. 0.82 3 ! 23.8 4.0 4.1e-09 3.3e-05 8 79 .. 210 281 .. 209 285 .. 0.76 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.96 Mucin-like 76 paapsssytapprdpsssyta 96 +++p +s++ + + s+s + T183228_2 114 KQTPWDSTYRRSLEASDSQRQ 134 344444444444444444444 PP == domain 2 score: 27.0 bits; conditional E-value: 3.9e-10 Mucin-like 21 sraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 + ++s + ++p++++ + g+pp+++ + ++p+++ + + ++pp+t + g+pp+++ ++++pp++ + +app T183228_2 168 QFHNSVNTGTPPHTTGMDTGTPPHTTGMDTGTPPHTTEMDTGTPPHTMGMDTGTPPHTTGMDTGTPPHTTGMDTGAPP 245 567788888888888888999999999999999998899999998888888888888888888888888888888887 PP == domain 3 score: 23.8 bits; conditional E-value: 4.1e-09 Mucin-like 8 qppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaap 79 +pp++ + g+p++++ + ++p++++ + g+pp+++ + +ap+ + + +app+t + g+pp++ T183228_2 210 TPPHTMGMDTGTPPHTTGMDTGTPPHTTGMDTGAPPHTTGMDTGAPPYTTGMDTGAPPHTMGMDTGTPPHTM 281 567777777888888888888888888888888888888888888888888888888888888888888765 PP >> Pro-rich Proline-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 13.2 7.4e-05 0.6 45 157 .. 131 278 .. 111 335 .. 0.67 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 7.4e-05 Pro-rich 45 ekpqkpppgglqprpp...............................egpppqggpqq.rppqggkpqgPPpqggpqrpp.P....Gkpqg.PPpqggnq 106 + qk + g+q ++ ++p g + + +p+ g + g Pp + + P G + g PP g + T183228_2 131 SQRQKA-QCGCQGLGS*grasqc*metvfqwrrknwrdqfhnsvntgTPPHTTGMDTGtPPHTTGMDTGTPPHTTEMDTGtPphtmGMDTGtPPHTTGMD 229 444444.556666666666777777777777777776666666666333334455556455556667776666665533222245565555255556777 PP Pro-rich 107 qqrppqpggkpqgpppqeppkqggpkPpqggnqqgpppPpagkpqgpPqrp 157 + +pp+ g g pp+ + g +P + g g+pp g g+P p T183228_2 230 TGTPPHTTGMDTGAPPHTTGMDTGAPPYTTGMDTGAPPHTMGMDTGTP--P 278 667777777777777777666677777777777777777777777766..2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 3169.80 // Query: T183228_3 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3107.65 // Query: T236009_1 [L=6306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1508 (0.0924813); expected 326.1 (0.02) Passed bias filter: 452 (0.0277199); expected 326.1 (0.02) Passed Vit filter: 341 (0.0209125); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.12u 0.40s 00:00:04.52 Elapsed: 00:00:00.90 # Mc/sec: 20044.88 // Query: T236009_2 [L=6305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1008 (0.0618177); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.38u 0.40s 00:00:02.78 Elapsed: 00:00:00.74 # Mc/sec: 24375.04 // Query: T236009_3 [L=6305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-06 25.3 0.3 0.0015 17.5 0.0 2.5 2 PHO4 Phosphate transporter family ------ inclusion threshold ------ 6.6 6.2 0.0 6.6 6.2 0.0 3.1 3 SUR7 SUR7/PalI family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.3 0.1 0.00099 8.1 130 171 .. 2866 2900 .. 2854 3177 .. 0.76 2 ! 17.5 0.0 1.9e-07 0.0015 99 172 .. 3439 3522 .. 3432 4388 .. 0.81 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.00099 PHO4 130 gllaallfllvrrlillkaalkllpllvlltvainaflilyk 171 +++ +++++ ++ ++ ++ +l++++v+++++++++ T236009_3 2866 MMMMVIVMV-------VMTMMVMVMMLMVVMVMMLMMMVTMM 2900 111111111.......12222222222222222222222211 PP == domain 2 score: 17.5 bits; conditional E-value: 1.9e-07 PHO4 99 iGaalaaag.savkwgglvkivlswvlsPllggllaallfllvrrlil..lkaalkllpllvlltvainaflilyk.......l 172 i++ ++ + v ++ ++ +++ +++++++ +++ ++++++v+ +++ ++a++ ++ ++++++++++++ i++k T236009_3 3439 IAVVIVVMMvVLVMVMMMAMVIMVMMMAVMVVMVMMVIMMMIVMVMVVkmIMAMVMMMMMIMMVMTMVVIITIMLKtlhttltR 3522 334444322133334567778888888888888888888888888866543334444444444444444555554444444440 PP >> SUR7 SUR7/PalI family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.0 0.0008 6.6 109 172 .. 2739 2889 .. 2735 2907 .. 0.52 2 ? -11.5 24.3 2 1.6e+04 111 168 .. 3459 3517 .. 3432 3539 .. 0.48 3 ? -7.2 5.2 2 1.6e+04 7 37 .. 6041 6072 .. 6025 6093 .. 0.47 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0008 SUR7 109 kalfilhiialvlsfislvvqllaic........................................................................ 134 ++l+ l+++ +v++++ ++v ++ ++ T236009_3 2739 QWLWWLMVVMIVMMMMVMMVMVMMVVmg**r*ww**w*r*w*w*w**ww***w*wq*****w**ww*ygdgddgdgdgddddgdgdygdddddddgdg 2836 66777777777666654444333333377777777777777777777777777777777777777777777777777777777777777777777766 PP SUR7 135 ................vspdnsrllsflnlllsllsflftllaalldtllfviv 172 n ++ ++++++ ++++++++ + ++++ l+v++ T236009_3 2837 sdddddgsnddddgdgDYGVND-VVVMIMIMMMMVIVMVVMTMMVMVMMLMVVM 2889 6666665554444443111112.2333333333333333333333333222222 PP == domain 2 score: -11.5 bits; conditional E-value: 2 SUR7 111 lfilhiialvlsfislvvqllai.cvspdnsrllsflnlllsllsflftllaalldtll 168 + +++++a++ ++++v+ ++++ ++ + ++ ++++++ ++ +++++++ +l tl T236009_3 3459 VIMVMMMAVMVVMVMMVIMMMIVmVMVVKMIMAMVMMMMMIMMVMTMVVIITIMLKTLH 3517 11122222222222222222222122222233344444455555555555555555555 PP == domain 3 score: -7.2 bits; conditional E-value: 2 SUR7 7 ilslaalillifallgsi.knstpltniylsk 37 +ls+++l l++f+ l+ + s +l+++ +++ T236009_3 6041 LLSFFSLCLSLFVSLPFSsSVSLFLSSTLCLS 6072 23333333333333332211122222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1453 (0.0891083); expected 326.1 (0.02) Passed bias filter: 316 (0.0193794); expected 326.1 (0.02) Passed Vit filter: 183 (0.0112229); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 4.61u 0.43s 00:00:05.04 Elapsed: 00:00:01.25 # Mc/sec: 14430.03 // Query: T337166_1 [L=6146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.38s 00:00:02.27 Elapsed: 00:00:00.75 # Mc/sec: 23443.55 // Query: T337166_2 [L=6145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.43s 00:00:02.45 Elapsed: 00:00:00.88 # Mc/sec: 19977.05 // Query: T337166_3 [L=6145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.21u 0.53s 00:00:03.74 Elapsed: 00:00:00.98 # Mc/sec: 17938.57 // Query: T121812_1 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 424 (0.0260027); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 3986.09 // Query: T121812_2 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 3512.93 // Query: T121812_3 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 4190.86 // Query: T183402_1 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 5580.82 // Query: T183402_2 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.67 # Mc/sec: 5414.23 // Query: T183402_3 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 5178.10 // Query: T368505_1 [L=264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.55 # Mc/sec: 1373.20 // Query: T368505_2 [L=264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 1218.16 // Query: T368505_3 [L=264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1280.10 // Query: T291132_1 [L=4992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-45 155.0 2.5 2.8e-45 154.4 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0017 18.1 1.0 0.0033 17.2 1.0 1.5 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 154.4 2.5 3.5e-49 2.8e-45 1 222 [] 4412 4668 .. 4412 4668 .. 0.92 Alignments for each domain: == domain 1 score: 154.4 bits; conditional E-value: 3.5e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291132_1 4412 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 4509 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291132_1 4510 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 4607 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291132_1 4608 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 4668 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 1.0 4e-07 0.0033 25 48 .. 3491 3514 .. 3488 3517 .. 0.90 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 4e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291132_1 3491 LEKRLDKMLTRITSLEKNINDLMQ 3514 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.77u 0.39s 00:00:02.16 Elapsed: 00:00:00.88 # Mc/sec: 16228.71 // Query: T291132_2 [L=4992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.40s 00:00:02.09 Elapsed: 00:00:00.79 # Mc/sec: 18077.55 // Query: T291132_3 [L=4992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.34s 00:00:01.91 Elapsed: 00:00:00.89 # Mc/sec: 16046.36 // Query: T090168_1 [L=4908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.34s 00:00:02.14 Elapsed: 00:00:00.75 # Mc/sec: 18721.27 // Query: T090168_2 [L=4908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.36s 00:00:02.15 Elapsed: 00:00:00.79 # Mc/sec: 17773.36 // Query: T090168_3 [L=4908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.38s 00:00:02.16 Elapsed: 00:00:00.83 # Mc/sec: 16916.81 // Query: T052746_1 [L=1778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 7371.82 // Query: T052746_2 [L=1778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 8073.90 // Query: T052746_3 [L=1778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.70 # Mc/sec: 7266.51 // Query: T000115_1 [L=975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 4648.85 // Query: T000115_2 [L=974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.75 # Mc/sec: 3715.26 // Query: T000115_3 [L=974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 4353.83 // Query: T170295_1 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.68 # Mc/sec: 2865.04 // Query: T170295_2 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.63 # Mc/sec: 3092.42 // Query: T170295_3 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.074 12.8 0.1 0.23 11.2 0.1 1.8 2 Plasmid_stab_B Plasmid stability protein Domain annotation for each model (and alignments): >> Plasmid_stab_B Plasmid stability protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 1.4e-05 0.23 35 61 .. 218 244 .. 216 246 .. 0.93 2 ? -2.3 0.0 0.22 3.7e+03 18 31 .. 264 277 .. 261 280 .. 0.86 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 1.4e-05 Plasmid_stab_B 35 RaaliaGlaLhkldprlpvllaellte 61 R l+aG+aL ++++ +p+ll +++t T170295_3 218 RRVLTAGIALPQTNAGFPLLLVTWVTS 244 899*********************985 PP == domain 2 score: -2.3 bits; conditional E-value: 0.22 Plasmid_stab_B 18 alatldslpqkeRg 31 al+++ ++p++eRg T170295_3 264 ALNLIPEMPPNERG 277 78999999*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 3193.81 // Query: T004114_1 [L=1728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 986 (0.0604685); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.64 # Mc/sec: 7724.24 // Query: T004114_2 [L=1728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 747 (0.0458114); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.70 # Mc/sec: 7062.16 // Query: T004114_3 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 6862.02 // Query: T353375_1 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 5189.72 // Query: T353375_2 [L=1161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 5827.06 // Query: T353375_3 [L=1160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 5105.48 // Query: T052983_1 [L=6926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.37s 00:00:02.27 Elapsed: 00:00:00.79 # Mc/sec: 25081.15 // Query: T052983_2 [L=6926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.39s 00:00:02.40 Elapsed: 00:00:00.80 # Mc/sec: 24767.64 // Query: T052983_3 [L=6925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.41s 00:00:02.31 Elapsed: 00:00:00.78 # Mc/sec: 25399.04 // Query: T062421_1 [L=2587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 9867.96 // Query: T062421_2 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 11381.70 // Query: T062421_3 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.74 # Mc/sec: 9997.44 // Query: T236162_1 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6876.59 // Query: T236162_2 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 6631.00 // Query: T236162_3 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.69 # Mc/sec: 5381.68 // Query: T093830_1 [L=6182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.38s 00:00:02.42 Elapsed: 00:00:00.77 # Mc/sec: 22968.38 // Query: T093830_2 [L=6182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.39s 00:00:02.35 Elapsed: 00:00:00.86 # Mc/sec: 20564.71 // Query: T093830_3 [L=6182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.41s 00:00:02.41 Elapsed: 00:00:00.78 # Mc/sec: 22673.91 // Query: T255260_1 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.19s 00:00:00.88 Elapsed: 00:00:00.70 # Mc/sec: 6077.22 // Query: T255260_2 [L=1486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 8502.39 // Query: T255260_3 [L=1486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 6642.49 // Query: T008080_1 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 835 (0.0512081); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 111 (0.00680731); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 1373.20 // Query: T008080_2 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.058 13.5 34.5 0.081 13.1 34.5 1.2 1 PTPRCAP Protein tyrosine phosphatase receptor type C-asso 0.17 10.1 24.8 0.21 9.7 24.8 1.1 1 CDC45 CDC45-like protein 0.27 11.2 5.0 0.38 10.7 5.0 1.3 1 DDHD DDHD domain 0.41 9.9 34.7 0.59 9.4 34.7 1.2 1 SDA1 SDA1 4.6 5.2 40.6 5.7 4.9 40.6 1.0 1 Nop14 Nop14-like family 7 5.4 12.4 9 5.0 12.4 1.1 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 34.5 3e-05 0.081 39 124 .. 99 182 .. 71 197 .. 0.63 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 3e-05 PTPRCAP 39 edgeedeeeEdqedeedeeedsedle.ggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedaegeasggsaeaLLsdLha 124 e++eed eeE++e+ee+eee++ e ++eee+e++eee++e+ee +ee+ +e++ee +eek++k++a + ++g ++++Ls L+ T008080_2 99 EEKEEDGEEEKEEEEEEEEEEE---E*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKKKACARETEGLGDVMLSALKM 182 5666666666666666655543...2222222222333333333333344444445555557778878888899**********996 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 24.8 7.6e-05 0.21 118 194 .. 107 177 .. 98 227 .. 0.30 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 7.6e-05 CDC45 118 eereayealeeeeesdedd.........eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse...........p 194 ee+e e+ eeee + eeeee+++eeeeeeeee+eeeeee++ee +++k+++ T008080_2 107 EEKE-EEEEEEEE-----Eee*eeeeeeEEEEEEEEEEEEEEEEEEEEEEEEEGEE--------------------EKEKKKKACareteglgdvmL 177 1111.11111111.....11222111111111111111111111111111111111....................111111111122333444331 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 5.0 0.00014 0.38 132 179 .. 128 184 .. 37 238 .. 0.52 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00014 DDHD 132 aklaesqksherssesskesqeskaaesssasssaksssaee...................kveled 179 ++++e+++++e+++e+++e++e++++ ++++ e + ++ed T008080_2 128 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEK----------EkkkkacareteglgdvmlsALKMED 184 1111111111111111111111111111111..........01112223334455544444333333 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 34.7 0.00022 0.59 103 179 .. 104 163 .. 86 208 .. 0.36 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00022 SDA1 103 dwevesdddseedseggwidvesdee.ieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekekv 179 d e e+ e++ + e++ee +ee++e+e+eeeeee eeeeeeeeeeeeeeee eeekek+k+ T008080_2 104 DGEEEK--------EEEEEEEEEEEE*EEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEGEEEKEKKKK 163 111110........0000000111112111111111111111..........11111111111111111111111111 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 40.6 0.0021 5.7 348 421 .. 100 163 .. 89 200 .. 0.48 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0021 Nop14 348 eededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaa 421 e++ed +ee+++++e+e+eeee eeeee+eeeee+eeeeeeeee+e++++++e e eee+e kk++ T008080_2 100 EKEEDGEEEKEEEEEEEEEEEE*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EGEEEKE---------KKKK 163 23333333333334444444446555555444444444443322222211111..1122222.........1111 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 12.4 0.0033 9 268 315 .. 103 157 .. 78 201 .. 0.51 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0033 DUF913 268 skseasssssssetkeeek..........ssededvemeda....eaetesesdeeeeseee 315 ++ e++++++++e++ee + + e+e++ e+e+e+e++eeee eee T008080_2 103 EDGEEEKEEEEEEEEEE-Ee*eeeeeeeeE------EEEEEeeeeEEEEEEEEEEEEEGEEE 157 22233333333333333.158765433211......11111112211111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1688 (0.10352); expected 326.1 (0.02) Passed bias filter: 570 (0.0349565); expected 326.1 (0.02) Passed Vit filter: 242 (0.0148412); expected 16.3 (0.001) Passed Fwd filter: 83 (0.00509015); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.87 # Mc/sec: 1025.95 // Query: T008080_3 [L=311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0024 18.2 13.4 0.0035 17.7 13.4 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 ------ inclusion threshold ------ 0.036 12.7 26.7 0.046 12.4 26.7 1.0 1 NPR3 Nitrogen Permease regulator of amino acid tr 0.042 13.8 11.4 0.05 13.6 11.4 1.1 1 DDHD DDHD domain 0.045 13.7 7.2 0.056 13.4 7.2 1.1 1 RP-C_C Replication protein C C-terminal region 0.064 13.6 9.1 0.085 13.2 9.1 1.2 1 DUF4228 Domain of unknown function (DUF4228) 0.091 11.4 2.7 0.099 11.3 2.7 1.1 1 Otopetrin Otopetrin 0.58 9.2 13.3 0.72 8.9 13.3 1.1 1 Zip ZIP Zinc transporter 1.1 7.8 19.0 1.5 7.4 19.0 1.1 1 Presenilin Presenilin 1.5 8.3 23.4 1.9 8.0 23.4 1.1 1 AAA_11 AAA domain 1.6 7.6 20.6 2 7.2 20.6 1.1 1 SLC12 Solute carrier family 12 4.6 5.5 22.3 6.1 5.1 22.3 1.0 1 VID27 VID27 cytoplasmic protein 4.7 5.6 8.3 5.4 5.4 8.3 1.0 1 Ndc1_Nup Nucleoporin protein Ndc1-Nup 6.1 6.1 22.2 8.4 5.6 22.2 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 9.3 4.8 24.4 13 4.3 24.4 1.1 1 Tim54 Inner membrane protein import complex subuni 9.9 4.0 10.0 12 3.7 10.0 1.0 1 DUF2126 Putative amidoligase enzyme (DUF2126) Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 13.4 3.2e-06 0.0035 26 77 .. 106 157 .. 37 174 .. 0.55 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 3.2e-06 RNA_pol_Rpc4 26 dkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaakl 77 +k+++ ++++k+k++++++++k++++++++kk+kkk++kkkkkkk+k++k+ T008080_3 106 KKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKK 157 2222222222222222222222222222222222222222222222222221 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 26.7 4.2e-05 0.046 42 112 .. 96 166 .. 86 199 .. 0.52 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 4.2e-05 NPR3 42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 +w+k+kk +kk+k++r++++k+kksk+++kk+ +++k++++++kk++k+++++++k++++++k+ +++ T008080_3 96 NRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVR 166 68999977664444444444444444444443333333333333333332222222222222222222222 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 11.4 4.6e-05 0.05 120 184 .. 98 162 .. 59 202 .. 0.53 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 4.6e-05 DDHD 120 lnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee 184 +++ +k++++++++ ++++k+++++++++k+++++k+++++++++++k++++++k+e ++k+ ++ T008080_3 98 WKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRR 162 33333333333333333333333333333333322222222222222222222211111111111 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 7.2 5.1e-05 0.056 37 100 .. 92 168 .. 89 216 .. 0.66 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.1e-05 RP-C_C 37 eevenaleaklkaenssanesqnerhiqnsnpesssesepasekereekeaaaasaeaepsek.............k 100 +++ n++++k+k e+++++ ++++++++s+++ +++++++++k++++k++++++++++++++ k T008080_3 92 TRILNRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEkkkkkrrrkhvreK 168 67889999999999999999999999999999655554433333333222222222222222223334444444443 PP >> DUF4228 Domain of unknown function (DUF4228) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 9.1 7.8e-05 0.085 92 158 .. 104 166 .. 51 198 .. 0.56 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 7.8e-05 DUF4228 92 vaalalkaskalakks.kkskrssaakksrsspsesskgsksrgrsssrvlelkkelsealsrgrrvr 158 + +++ k++k+++kk+ +k +++kk+r+++++++k+ k++++++++ + kke +++++r+++vr T008080_3 104 MEKKKKKRRKKKKKKKkSK----KKRKKKRKKKKKKKKK-KKKKKKKKKKKKKKKEKKKKKRRRKHVR 166 2222211111111111111....1111111111111111.1111111111111222222222333333 PP >> Otopetrin Otopetrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 2.7 9.1e-05 0.099 96 156 .. 102 174 .. 90 271 .. 0.55 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 9.1e-05 Otopetrin 96 keitayhkkeesareasessssarqdalrkakkvltkstatekiisarteqrtastssqs..............s 156 k++ + +kk++++++++++s+++r+++++k+kk ++k+++++k+++++ ++++++++ + + T008080_3 102 KKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKK--KrrrkhvrekqrdleM 174 333333333333333333333333333322222222222222222221111111111..1223334444445550 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 13.3 0.00066 0.72 93 171 .. 92 164 .. 87 202 .. 0.46 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00066 Zip 93 eklltmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas 171 ++l+ +++k +k++kk+++ ++++++kk+ +++ ++ ++k++ ++++++++++k++++++k+ek++++ ++++ T008080_3 92 TRILNRWKKK-----KKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKK-KKKKKKKKKKKKKKKKKKKEKKKKKRRRKH 164 4566666666.....333333333222222222222222222222222.222222222222222222222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 19.0 0.0014 1.5 233 295 .. 101 164 .. 82 176 .. 0.28 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0014 Presenilin 233 evakaeeeeeaekkeeeaseeskeeeseeesseksassse.seeeeeeesaeaeseaeesseek 295 ++++++++++++kk++++++++k++++++++++k++++++ ++++++++++++e++++++++++ T008080_3 101 KKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKkKKKKKKKKKKKKEKKKKKRRRKH 164 1111111111111111111111111111111111111111011111111111111111111111 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 23.4 0.0018 1.9 117 187 .. 102 170 .. 78 179 .. 0.38 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0018 AAA_11 117 lekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaee 187 ++ ek ++ ++ +k+++k +k+ r+++++++k+k++k+k+k+k+k++++++k kk++k+ +k ++++++ T008080_3 102 KKM--EKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVREKQR 170 111..112222222222222222222222222222333333333333333333333333333333333333 PP >> SLC12 Solute carrier family 12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 20.6 0.0019 2 136 204 .. 101 165 .. 80 179 .. 0.31 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0019 SLC12 136 eeeekeakeaeeseakeseeekkekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslll 204 +++ +++k++++ k+++++kk+k+++k+++++ +++kk ++k+kkk+kkkkk+kkek+kkk++++ + T008080_3 101 KKKMEKKKKKRR---KKKKKKKKSKKKRKKKRKKKKKKKK-KKKKKKKKKKKKKKKKEKKKKKRRRKHV 165 111111111111...1111111111111111111111111.1111122222222222222222222222 PP >> VID27 VID27 cytoplasmic protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 22.3 0.0056 6.1 193 271 .. 99 168 .. 86 178 .. 0.27 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0056 VID27 193 aesleveketeeaaeekeakkeskkkkskeeeeeeeekeaeakkakskeks.skeekkeelapkaaskeapekeellaee 271 ++++++ek++++++++k++kk+skkk +k++++++++k++++kk+k+k+k+ +k+ekk+++ ++++ + e+ T008080_3 99 KKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKkKKKEKKKKK----------RRRKHVREK 168 3333322222222222222211111111111111111111111111111110111111111..........111222222 PP >> Ndc1_Nup Nucleoporin protein Ndc1-Nup # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 8.3 0.0049 5.4 354 443 .. 102 166 .. 88 235 .. 0.48 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0049 Ndc1_Nup 354 ge.papkaaps.....kapknkasapvkelprlsksplkkk...ddeifgn.....slsaeaspkssssskegvekalsslakspgqsssptarlsarar 439 ++ + ++ k++k+k+++++k++++ +k+++kkk + + ++++++ + + ++r r T008080_3 102 KKmE-----KKkkkrrKKKKKKKKSKKKRKKKRKKKKKKKKkkkK-----KkkkkkKKKKKKEK-----------------------------KKKKRRR 162 2211.....101111111111111111111111111111111100.....00011111111111.............................1112333 PP Ndc1_Nup 440 klle 443 k+++ T008080_3 163 KHVR 166 3333 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 22.2 0.0077 8.4 18 72 .. 103 158 .. 80 172 .. 0.39 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0077 SpoIIP 18 pteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.dseeeeekl 72 ++e++++++ +k++k+k+++++ +k+ +++++ kk++k+++k+k++ ++++e++k+ T008080_3 103 KMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKkKKKKEKKKK 158 22222222222222222222222222222222222222222222221222222222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 24.4 0.012 13 199 249 .. 107 160 .. 88 176 .. 0.35 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.012 Tim54 199 eeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeek.eeeeeeeekekkkkv 249 +++++++++++++k+++++++ ++++++k+++k+++k ++++++++++kkkk T008080_3 107 KKKKRRKKKKKKKKSKKKRKKkrKKKKKKKKKKKKKKKkKKKKKKKKEKKKKKR 160 111111111111111111111111111111111111110222222222222222 PP >> DUF2126 Putative amidoligase enzyme (DUF2126) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 10.0 0.011 12 270 319 .. 105 158 .. 77 177 .. 0.39 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.011 DUF2126 270 eleaeveedpleereelpe....akeaeaeeekeekekakeeeeekekekeeae 319 e++++ ++++ +++++ ++ +++++++++k++k+k+k+++++k+k++++++ T008080_3 105 EKKKKKRRKKKKKKKKSKKkrkkKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKK 158 222222222222222222211111111122222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3862 (0.236845); expected 326.1 (0.02) Passed bias filter: 1263 (0.0774562); expected 326.1 (0.02) Passed Vit filter: 783 (0.0480191); expected 16.3 (0.001) Passed Fwd filter: 175 (0.0107322); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 1.53u 0.43s 00:00:01.96 Elapsed: 00:00:00.73 # Mc/sec: 1218.79 // Query: T125916_1 [L=1593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8935.89 // Query: T125916_2 [L=1592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 8930.28 // Query: T125916_3 [L=1592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 8930.28 // Query: T369592_1 [L=300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 1788.02 // Query: T369592_2 [L=300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1826.06 // Query: T369592_3 [L=299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 1782.06 // Query: T124775_1 [L=3634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 18902.28 // Query: T124775_2 [L=3634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.25s 00:00:01.26 Elapsed: 00:00:00.53 # Mc/sec: 19615.58 // Query: T124775_3 [L=3634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.53 # Mc/sec: 19615.58 // Query: T182825_1 [L=3303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 680 (0.0417024); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 16873.79 // Query: T182825_2 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 570 (0.0349565); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 16010.95 // Query: T182825_3 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 575 (0.0352631); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 16572.74 // Query: T125875_1 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.48 # Mc/sec: 7271.28 // Query: T125875_2 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.041 12.7 0.4 0.061 12.1 0.4 1.1 1 MdoG Periplasmic glucan biosynthesis protein, MdoG Domain annotation for each model (and alignments): >> MdoG Periplasmic glucan biosynthesis protein, MdoG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.4 3.8e-06 0.061 301 324 .. 107 130 .. 101 146 .. 0.88 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 3.8e-06 --TTT-GGG--EEEEEESS---EE CS MdoG 301 qDlearYekRPslwvepkgdwgkG 324 qD+e+ +e+RPs w ep++dwg+ T125875_2 107 QDMETGWEQRPSQWPEPSQDWGAE 130 8*********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6980.43 // Query: T125875_3 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 6843.55 // Query: T367394_1 [L=2768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.61 # Mc/sec: 12981.60 // Query: T367394_2 [L=2767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.54 # Mc/sec: 14659.10 // Query: T367394_3 [L=2767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.60 # Mc/sec: 13193.19 // Query: T278149_1 [L=1747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 8924.77 // Query: T278149_2 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 9081.83 // Query: T278149_3 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 8919.66 // Query: T018734_1 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-61 206.0 37.8 5.3e-36 124.2 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 0.009 15.9 1.1 0.009 15.9 1.1 2.9 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 15.7 4.6e-32 3.7e-28 3 96 .. 1786 1879 .. 1786 1880 .. 0.98 2 ! 124.2 14.1 6.5e-40 5.3e-36 184 304 .. 1964 2075 .. 1953 2076 .. 0.96 3 ? -7.2 18.9 2 1.6e+04 123 229 .. 2125 2235 .. 2096 2240 .. 0.67 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 4.6e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018734_1 1786 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1879 599*****************************************************************************************95 PP == domain 2 score: 124.2 bits; conditional E-value: 6.5e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018734_1 1964 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2052 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018734_1 2053 KLMNECDHLKESLFQYEREKAER 2075 **********************9 PP == domain 3 score: -7.2 bits; conditional E-value: 2 CCDC144C 123 rerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigkq 216 + d+++ ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++q T018734_1 2125 SQFDDFMAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQEQ 2222 44566777788888888888888888888763334677788888887777777666666677777888888888888886665555555554145566 PP CCDC144C 217 esleerlsqlqse 229 + +l ql+++ T018734_1 2223 AEHKKQLEQLNKD 2235 6666777777665 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 1.1 1.1e-06 0.009 24 94 .. 1966 2035 .. 1962 2036 .. 0.95 2 ? -2.6 0.2 0.55 4.5e+03 59 80 .. 2077 2098 .. 2047 2106 .. 0.52 3 ? -1.0 10.8 0.18 1.5e+03 13 95 .. 2153 2232 .. 2141 2239 .. 0.82 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018734_1 1966 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2035 68999********************************************************76.9999986 PP == domain 2 score: -2.6 bits; conditional E-value: 0.55 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018734_1 2077 VVVRQLQQEAADSLKKLTMLES 2098 3456666666666666655554 PP == domain 3 score: -1.0 bits; conditional E-value: 0.18 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a++ +++++++ T018734_1 2153 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAEH--KKQLEQL 2232 4444.46789********************************************************99998866..5666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1138 (0.0697903); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.57 # Mc/sec: 13998.34 // Query: T018734_2 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-17 61.1 9.6 8.5e-17 61.1 9.6 1.5 2 CCDC144C CCDC144C protein coiled-coil region 5.7e-09 36.2 0.0 5.7e-09 36.2 0.0 2.6 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 2.4 1.2 9.8e+03 28 107 .. 1347 1375 .. 1334 1384 .. 0.40 2 ! 61.1 9.6 1e-20 8.5e-17 96 185 .. 1878 1965 .. 1865 1967 .. 0.93 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 1.2 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018734_2 1347 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1375 22222221...................................................133333444444444444433 PP == domain 2 score: 61.1 bits; conditional E-value: 1e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018734_2 1878 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 1965 689**********************9554.57..89*****************************************************99 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 2.1 0.13 1.1e+03 25 45 .. 1336 1356 .. 1333 1384 .. 0.69 2 ? -4.5 0.9 2 1.6e+04 44 70 .. 1926 1952 .. 1922 1964 .. 0.73 3 ! 36.2 0.0 6.9e-13 5.7e-09 64 107 .. 2302 2344 .. 2298 2346 .. 0.95 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.13 DUF3496 25 snkteLekykqlyleelkvrk 45 n+ eLe+ +++y +e+++++ T018734_2 1336 KNREELERKEKQYKKEVEAKQ 1356 4789************99875 PP == domain 2 score: -4.5 bits; conditional E-value: 2 DUF3496 44 rksLsnklnktnerLaevstkllveke 70 ++ L ++l+kt+ + + ++ k+ ++ T018734_2 1926 NEFLTEQLSKTQIKFNTLKDKFRKKRD 1952 678888999999888888888766665 PP == domain 3 score: 36.2 bits; conditional E-value: 6.9e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018734_2 2302 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 2344 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.52 # Mc/sec: 15608.03 // Query: T018734_3 [L=2837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-17 61.4 7.5 1.8e-16 60.3 7.5 1.4 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.3 7.5 1.1e-20 1.8e-16 3 69 .. 2242 2307 .. 2241 2309 .. 0.93 Alignments for each domain: == domain 1 score: 60.3 bits; conditional E-value: 1.1e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018734_3 2242 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 2307 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 11118.05 // Query: T228579_1 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3146.91 // Query: T228579_2 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 2821.37 // Query: T228579_3 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3087.54 // Query: T040979_1 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 3236.02 // Query: T040979_2 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 19.0 0.0 0.0034 17.8 0.0 1.5 1 Ank_2 Ankyrin repeats (3 copies) 0.0062 16.8 0.0 0.014 15.7 0.0 1.5 1 Ank Ankyrin repeat 0.0067 16.7 0.0 0.015 15.6 0.0 1.6 1 Ank_3 Ankyrin repeat ------ inclusion threshold ------ 0.013 15.7 0.0 0.028 14.7 0.0 1.5 1 Ank_5 Ankyrin repeats (many copies) Domain annotation for each model (and alignments): >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 8.3e-07 0.0034 55 80 .. 310 335 .. 298 341 .. 0.81 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 8.3e-07 Ank_2 55 rtaLhlAarsghleivklLlekgadi 80 taLh+A+ +gh e+v +L+++++++ T040979_2 310 GTALHWACVNGHAEVVTFLVDRKCQL 335 48999999999999999999776655 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 3.5e-06 0.014 4 24 .. 311 331 .. 311 341 .. 0.86 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 3.5e-06 BHHHHHHHHTTHHHHHHHHTT CS Ank 4 TPLHlAatngkkriiklLLhG 24 T+LH+A+ ng+++++ +L+++ T040979_2 311 TALHWACVNGHAEVVTFLVDR 331 9****************9954 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 3.7e-06 0.015 4 28 .. 311 334 .. 308 337 .. 0.86 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 3.7e-06 Ank_3 4 tpLhlAarsgrpeivkfLlenlgad 28 t+Lh+A+ +g+ e+v fL++ + + T040979_2 311 TALHWACVNGHAEVVTFLVD-RKCQ 334 9******************9.6654 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 6.7e-06 0.028 15 44 .. 310 337 .. 300 341 .. 0.85 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 6.7e-06 Ank_5 15 ggntpLhlAakggalevvrlLlargadlnl 44 g t+Lh+A+ +g++evv +L++r + l++ T040979_2 310 G--TALHWACVNGHAEVVTFLVDRKCQLDV 337 3..*******************99888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 3524.95 // Query: T040979_3 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3403.40 // Query: T026763_1 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 2769.07 // Query: T026763_2 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 13.9 1.0 0.11 12.5 1.0 1.7 1 Toxin_23 Magi 5 toxic peptide family Domain annotation for each model (and alignments): >> Toxin_23 Magi 5 toxic peptide family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 1.0 7e-06 0.11 4 20 .. 128 144 .. 127 145 .. 0.88 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 7e-06 Toxin_23 4 ltflrCssdkdCCGltP 20 ++f +Css+ CC+ P T026763_2 128 FSFYKCSSNSTCCEPSP 144 89***********9665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.67 # Mc/sec: 2190.46 // Query: T026763_3 [L=512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-09 36.4 0.8 4.7e-09 35.5 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.8 2.9e-13 4.7e-09 1 19 [] 406 424 .. 406 424 .. 0.98 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 2.9e-13 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T026763_3 406 SFAGTWMKLETIILSKLTQ 424 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 703 (0.043113); expected 326.1 (0.02) Passed bias filter: 341 (0.0209125); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 2441.24 // Query: T023851_1 [L=6120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-13 48.8 0.0 7.9e-13 48.1 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.1 0.0 4.8e-17 7.9e-13 8 106 .. 3604 3702 .. 3598 3721 .. 0.92 Alignments for each domain: == domain 1 score: 48.1 bits; conditional E-value: 4.8e-17 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBE CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifaril 105 + + sAg+++ ++ t++pg+t ++p+++++ lp + +l+lp S a+kg++v+ gvid dy+ e+++ l+n +k++ ++gd + +L++ ++ T023851_1 3604 PMTLHSAGLEVLVPGGGTLPPGDTRMIPLNRKLRLPPRHFGLLLPLSQQAKKGVTVLAGVIDPDYQDEISILLYNGGKEEYAWNTGDPLGHLLVLPCP 3701 667789****************************************************************************************9997 PP C CS dUTPase 106 t 106 T023851_1 3702 M 3702 6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.99u 0.48s 00:00:02.46 Elapsed: 00:00:00.78 # Mc/sec: 22446.51 // Query: T023851_2 [L=6119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-13 50.5 0.0 3e-13 49.9 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 0.0 1.9e-17 3e-13 2 118 .. 3421 3534 .. 3420 3535 .. 0.94 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 1.9e-17 rve 2 trpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftr 98 ++p +wqvD+ +++ ++++++++l+ id++ ++ +a++ + +a+t+i+ l + + + +g p + sD+ + +ka+ ++ + +gi +s++ T023851_2 3421 NQPATWWQVDYIgPLP--SWKSQSFVLTGIDTYLGYGFAYPACNA-SAKTTIRGLMKCLTHHHGI-PNSIASDQRIHFMAKAVWQWSRAHGIYWSYHI 3514 5899********7777..77778**********************.9999999999999999998.******************************** PP rve 99 pgrpqdnGkvErfnrtlkde 118 p++p+ G++E n++lk + T023851_2 3515 PHHPEAAGLIEWWNGLLKSQ 3534 *****************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.74u 0.42s 00:00:02.16 Elapsed: 00:00:00.84 # Mc/sec: 20839.78 // Query: T023851_3 [L=6119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.37s 00:00:02.31 Elapsed: 00:00:00.73 # Mc/sec: 23980.03 // Query: T338760_1 [L=965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 4679.15 // Query: T338760_2 [L=965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.69 # Mc/sec: 4001.02 // Query: T338760_3 [L=965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-08 34.9 0.0 2.1e-08 34.1 0.0 1.3 1 Trypsin Trypsin 0.0037 17.5 0.0 0.0077 16.5 0.0 1.4 1 DUF1986 Domain of unknown function (DUF1986) Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.0 2.6e-12 2.1e-08 49 130 .. 209 285 .. 202 289 .. 0.88 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 2.6e-12 GEEEEESESBTTSETTTCEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTTBSSBHCCBBCSTTHTTSTTTEEEEEESSBS CS Trypsin 49 dvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvsGwgrt 130 +v+vv+g++++++ + ++ +v+kvi+h++y+p +ld D+ ll l++pv+++++ +p+cl++++ ++ c+ + w +t T338760_3 209 NVTVVMGTRTFSNIHS--ERKQVQKVIIHKDYKPPQLDSDLSLLLLATPVQFSNFKMPVCLQEEE---RTWDWCWMAQWVTT 285 5889999977777777..799******************************************55...58889999988665 PP >> DUF1986 Domain of unknown function (DUF1986) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 9.4e-07 0.0077 37 99 .. 205 270 .. 196 277 .. 0.80 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 9.4e-07 DUF1986 37 lehsyvsvvlGgaktkksvkgpyeqivrvdafkdvp....ksevvllhleskvsfsrhvlPtfvpes 99 + v+vv+G ++t +++++ +q+++v +kd s+++ll l+++v+fs+ +P+ + e T338760_3 205 MAVVNVTVVMG-TRTFSNIHSERKQVQKVIIHKDYKppqlDSDLSLLLLATPVQFSNFKMPVCLQEE 270 44456777776.689**************99998642333799******************999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 5309.04 // Query: T099717_1 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 7161.77 // Query: T099717_2 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 6707.06 // Query: T099717_3 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 6810.62 // Query: T047520_1 [L=1687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 7424.95 // Query: T047520_2 [L=1687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.76 # Mc/sec: 6350.29 // Query: T047520_3 [L=1686] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1686 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7093.18 // Query: T238557_1 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-23 82.2 1.0 2.9e-23 81.4 1.0 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.4 1.0 1.8e-27 2.9e-23 6 80 .] 302 375 .. 299 375 .. 0.91 Alignments for each domain: == domain 1 score: 81.4 bits; conditional E-value: 1.8e-27 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 ++ + W+++ + +++ +kkvm+tV Wsa++li+y+fl+pgetitse+Yaqq+ k+++klq + palvnr T238557_1 302 NQLSGWTKRQLQSSSQSQT-CTKKKVMVTVRWSAAHLIHYSFLNPGETITSEKYAQQIGKMHRKLQYLLPALVNR 375 5677888888888888877.888**************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 6657.93 // Query: T238557_2 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 6003.05 // Query: T238557_3 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-05 23.6 0.2 6e-05 22.7 0.2 1.3 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.2 3.7e-09 6e-05 6 31 .. 300 325 .. 298 329 .. 0.94 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 3.7e-09 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkkv 31 ++ aqWld++++pk++pkp+lhqkk T238557_3 300 QQPAQWLDQEAAPKQFPKPNLHQKKG 325 6899********************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 5548.28 // Query: T132185_1 [L=3465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.63 # Mc/sec: 15734.57 // Query: T132185_2 [L=3464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.34s 00:00:01.78 Elapsed: 00:00:00.73 # Mc/sec: 13575.23 // Query: T132185_3 [L=3464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.0 0.8 0.21 11.1 0.8 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.8 1.3e-05 0.21 7 19 .] 2672 2684 .. 2672 2684 .. 0.94 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.3e-05 DUF1725 7 MELEnIILSEisQ 19 M LEnI+LSE sQ T132185_3 2672 MNLENIMLSERSQ 2684 88********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.71 # Mc/sec: 13957.63 // Query: T295149_1 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 5462.40 // Query: T295149_2 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 5544.56 // Query: T295149_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 5373.96 // Query: T002728_1 [L=2998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:00.64 # Mc/sec: 13401.20 // Query: T002728_2 [L=2997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.62 # Mc/sec: 13828.88 // Query: T002728_3 [L=2997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.61 # Mc/sec: 14055.59 // Query: T168003_1 [L=7166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-21 74.9 0.2 8.3e-21 74.1 0.2 1.3 1 TLV_coat ENV polyprotein (coat polyprotein) 6.3e-10 39.2 0.0 1.1e-09 38.4 0.0 1.3 1 rve Integrase core domain 0.0013 18.6 0.2 0.0038 17.1 0.2 1.9 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.013 15.1 0.0 0.013 15.1 0.0 2.1 2 Gag_MA Matrix protein (MA), p15 0.56 9.8 5.5 1.4 8.5 5.5 1.7 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.1 0.2 2.6e-24 8.3e-21 423 517 .. 6823 6916 .. 6818 6932 .. 0.80 Alignments for each domain: == domain 1 score: 74.1 bits; conditional E-value: 2.6e-24 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX CS TLV_coat 423 tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlw 517 +++ +L l + + +++s+s l+ +++ la vvlQN GLDlL++e+GGlC L+EeC F ++sg+v d ++kL++r ++ + ++ ++ T168003_1 6823 HHSAASLMTSLFS-ITDISQSLSVLQAQVDTLAAVVLQNCQGLDLLTAEKGGLCIFLNEECLFNFNQSGLVYDDVKKLKNRAQNLASQATNYAGP 6916 5566666666654.7889*************************************************************9988655554444444 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.4 0.0 3.4e-13 1.1e-09 4 99 .. 5589 5680 .. 5588 5682 .. 0.87 Alignments for each domain: == domain 1 score: 38.4 bits; conditional E-value: 3.4e-13 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrp 99 p + +q+D+t+ + + ++ yllv++d+f+++i a+++++e+++ ++ ll ++ +fg + s ng++++s+ ++++ + lgi++++++p T168003_1 5589 PTQDYQIDFTHRP--QVKKLRYLLVWVDTFTGWIEAFPTRSEKATTVISSLLSDIIPWFGL--ATSIQSNNGPAFVSQITQAVSQALGIQWKLHAP 5680 56779*****999..555579*********************7777777777777777777..79****************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.2 1.2e-06 0.0038 2 15 .. 4637 4650 .. 4636 4650 .. 0.92 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.2e-06 CTSSSSSSSSTTTT CS zf-CCHC 2 kCynCGepGHiard 15 +C++C++pGH+a++ T168003_1 4637 PCFKCQKPGHWASE 4650 7***********97 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.6 2.7 8.9e+03 38 51 .. 3679 3692 .. 3678 3696 .. 0.90 2 ? 15.1 0.0 3.9e-06 0.013 28 63 .. 4206 4245 .. 4203 4254 .. 0.82 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 2.7 HHTTGGGGSSS--T CS Gag_MA 38 CsseWptlnvgWPr 51 C+ +W+ ++ WP+ T168003_1 3679 CCKQWTPFGSLWPH 3692 999**********7 PP == domain 2 score: 15.1 bits; conditional E-value: 3.9e-06 ---HHHHHHHHHTTGGGGSS....S--TT----HHHHHHH CS Gag_MA 28 evrkkklitlCsseWptlnv....gWPreGtfdltviakv 63 +++ k li +C+ Wp ++ +WP++Gtf+l++++ + T168003_1 4206 DIKAKCLIFFCNIAWPQYKLdnssKWPENGTFNLSILQDL 4245 799999**********997533337**********99876 PP >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.5 0.00043 1.4 7 20 .. 5867 5880 .. 5867 5886 .. 0.88 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00043 DUF3704 7 SFGYMPksgIAGSS 20 SFGYMP +g AGS T168003_1 5867 SFGYMPSNGMAGSN 5880 9***********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.08u 0.40s 00:00:02.48 Elapsed: 00:00:00.89 # Mc/sec: 23034.50 // Query: T168003_2 [L=7166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-14 52.9 0.0 4.8e-14 52.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 1.5e-13 51.0 0.0 2.5e-13 50.3 0.0 1.2 1 RNase_H RNase H ------ inclusion threshold ------ 0.016 15.3 0.0 0.032 14.4 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.3 0.0 8.8e-18 4.8e-14 32 185 .. 4411 4564 .. 4383 4569 .. 0.85 Alignments for each domain: == domain 1 score: 52.3 bits; conditional E-value: 8.8e-18 Gag_p30 32 esillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeafpltrpdwdyeta.egreslklyrqlllaglrgaarrptnlak 128 + + +++ tw d + +l + ++++rv + a+ + + l++ a + p+w+y+t +g + l+ gl+ aa + n + T168003_2 4411 QYLTQSYNLTWSDLNVILTFTPSPDKQERVYFLAQSYTDTHWLHEPGLQEG-TRAVAREYPHWQYQTDsPGIARRDYMVSCLVEGLKKAAYSAVNYDN 4507 555667778888888888888888888888888888777776666666654.57888999******962576666667789***************** PP Gag_p30 129 vkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklq 185 +k +qgk e+pa f+ rl + r++t d e pe + + + fi+q a+dirk lq T168003_2 4508 LKVTTQGKVENPAQFIARLAATLRHFTALDQEGPEGHLILNMHFITQPAPDIRKNLQ 4564 *******************************************************98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.3 0.0 4.6e-17 2.5e-13 3 109 .. 5324 5430 .. 5322 5439 .. 0.81 Alignments for each domain: == domain 1 score: 50.3 bits; conditional E-value: 4.6e-17 SEEEEEEEEEECT..TTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSB CS RNase_H 3 avvvYtDGsclgn..sgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkp 97 +++++ DGs+++ +++++ag+v+ + ++ + +++l++ t ++aEL+A+++ L ++ +vniytDSkY+++ ++ w +++ tt+ + T168003_2 5324 DHTWFIDGSSSRPnrQSPARAGYVVVSSTSVTEATALHPSITSQQAELIALTQDLTlV--KGLCVNIYTDSKYAFHIVHYHAVIWAERGFLTTQGS-S 5418 679******9976346666****87666567888888899***************944..99**************77877777888888556555.7 PP HTTHHHHHHHHH CS RNase_H 98 vknkelaellke 109 ++n++l+++l + T168003_2 5419 IINASLIKILLK 5430 ***999999854 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 5.8e-06 0.032 19 89 .. 4737 4802 .. 4732 4802 .. 0.88 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 5.8e-06 EE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 19 llDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllG 89 l+D GA++t + + P + a +++ i g+ + + + + +l+++ f + s+l++p++pv+llG T168003_2 4737 LIDMGATHTTLLSFQGPVS----LAPVTVVVIDGQAsRPLKTPQLLCQLGQHSFMH--SFLVIPTCPVPLLG 4802 99*****************....9********999945555566677888999999..************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.05u 0.40s 00:00:02.44 Elapsed: 00:00:00.81 # Mc/sec: 25309.52 // Query: T168003_3 [L=7165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.27u 0.43s 00:00:02.70 Elapsed: 00:00:00.87 # Mc/sec: 23560.74 // Query: T170761_1 [L=338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 1696.42 // Query: T170761_2 [L=338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.59 # Mc/sec: 1638.92 // Query: T170761_3 [L=337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 1555.00 // Query: T026987_1 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-08 34.3 0.4 2.4e-08 33.3 0.4 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 0.4 1.5e-12 2.4e-08 1 19 [] 4454 4472 .. 4454 4472 .. 0.98 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 1.5e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS++sQ T026987_1 4454 SFVGTWMKLETIILSKVSQ 4472 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:00.80 # Mc/sec: 16796.65 // Query: T026987_2 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-07 28.6 0.7 1.3e-06 27.7 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 0.7 8.2e-11 1.3e-06 1 19 [] 4653 4671 .. 4653 4671 .. 0.98 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 8.2e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM LE+IILS+ +Q T026987_2 4653 SFAGTWMTLETIILSKLTQ 4671 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.53u 0.37s 00:00:01.90 Elapsed: 00:00:00.80 # Mc/sec: 16796.65 // Query: T026987_3 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.42s 00:00:02.11 Elapsed: 00:00:00.80 # Mc/sec: 16796.65 // Query: T331402_1 [L=2918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.61 # Mc/sec: 13685.09 // Query: T331402_2 [L=2918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 12842.93 // Query: T331402_3 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.75 # Mc/sec: 11126.72 // Query: T125972_1 [L=889] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (889 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 4036.95 // Query: T125972_2 [L=889] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (889 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 4709.77 // Query: T125972_3 [L=889] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (889 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4541.57 // Query: T091536_1 [L=3709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-14 53.5 0.0 3.4e-14 52.3 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.3 0.0 2.1e-18 3.4e-14 16 67 .. 2659 2710 .. 2651 2723 .. 0.90 Alignments for each domain: == domain 1 score: 52.3 bits; conditional E-value: 2.1e-18 Transposase_1 16 etpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr 67 + k +pk++l kkvm+t+wWs+++li+++fl+ +eti se +qq+d ++ T091536_1 2659 RRSKALPKAKLAPKKVMVTIWWSSARLIHCSFLNASETIASEECTQQIDDMH 2710 567999********************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.60 # Mc/sec: 17684.70 // Query: T091536_2 [L=3708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0056 16.4 0.4 0.014 15.1 0.4 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.4 8.3e-07 0.014 9 30 .. 2652 2673 .. 2646 2676 .. 0.94 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 8.3e-07 Transposase_1 9 aqWldkgetpkkvpkpelhqkk 30 aqWld++++p ++pkp+lhqk+ T091536_2 2652 AQWLDQEDAPRHFPKPNLHQKR 2673 7*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.59 # Mc/sec: 17979.59 // Query: T091536_3 [L=3708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.60 # Mc/sec: 17679.93 // Query: T167024_1 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 5178.10 // Query: T167024_2 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 24.6 0.0 3.3e-05 23.9 0.0 1.2 1 ADK Adenylate kinase Domain annotation for each model (and alignments): >> ADK Adenylate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.0 2e-09 3.3e-05 56 96 .. 620 660 .. 617 668 .. 0.90 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 2e-09 -HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ADK 56 pdevvvklvkeelekedkkkgfllDGfPRtveqaealeell 96 ++ ++ ++v++++ ++ +++gfl+DGfP +v+qa+++e+++ T167024_2 620 SQGIIPDMVSDNMLSRPESRGFLIDGFPQEVKQAMEFERIV 660 5678999*******************************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 4794.54 // Query: T167024_3 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4978.94 // Query: T099952_1 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3547.43 // Query: T099952_2 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3410.99 // Query: T099952_3 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.097 13.0 16.6 0.19 12.0 2.9 3.0 3 DUF1720 Domain of unknown function (DUF1720) 5.1 7.1 7.0 56 3.8 0.0 4.4 5 DUF382 Domain of unknown function (DUF382) Domain annotation for each model (and alignments): >> DUF1720 Domain of unknown function (DUF1720) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 2.9 2.4e-05 0.19 3 75 .] 204 299 .. 192 299 .. 0.74 2 ? 9.7 4.0 0.00013 1.1 4 44 .. 295 337 .. 286 355 .. 0.80 3 ? -3.5 0.1 1.7 1.4e+04 40 46 .. 479 486 .. 470 494 .. 0.51 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.4e-05 DUF1720 3 PqstGfqppqqqqpqqq......qplqpqpTGfmpqqqtgq.....glqpqpTGngqfap.....glqpqqTGf.......qeqqqqglqP...qaTGf 75 P++t ++p + p+ + +p q TGf p ++q + q+TG f+p q+ +TG ++ q ++ P q+TGf T099952_3 204 PSPTALAPTHPIHPSVPa*rcpvPPHWHQHTGFIPSSLPTQ*cpvpPHWHQRTG---FIPpslpdDAQSHRTGTnapdssfLPARQCPVPPhwhQRTGF 299 677777777777777778888887888899999999998889977767779999...555555588888888886666666555666666677777776 PP == domain 2 score: 9.7 bits; conditional E-value: 0.00013 DUF1720 4 qstGfqppqqqqpqqq.qplqpqpTGfmpqqqtgq.glqpqpT 44 q+tGf pp+ +++ + +p q TGf+p+ + + +l+p T T099952_3 295 QRTGFIPPSLPAQRCPvPPHWHQGTGFLPPCPMMPsPLAPKHT 337 88*******9999998999999******998866589999988 PP == domain 3 score: -3.5 bits; conditional E-value: 1.7 DUF1720 40 qpqpTG.n 46 +pq G + T099952_3 479 APQLSGtG 486 44444422 PP >> DUF382 Domain of unknown function (DUF382) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.0069 56 30 43 .. 185 198 .. 184 211 .. 0.90 2 ? -0.1 0.0 0.11 8.6e+02 30 42 .. 225 237 .. 223 241 .. 0.84 3 ? 0.4 0.1 0.075 6.1e+02 30 42 .. 247 259 .. 246 262 .. 0.87 4 ? 1.6 0.1 0.033 2.7e+02 29 42 .. 287 300 .. 283 310 .. 0.86 5 ? -0.3 0.0 0.13 1e+03 29 42 .. 309 322 .. 303 324 .. 0.83 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0069 DUF382 30 pvpshWsskreyls 43 pvp hW+++ ++l+ T099952_3 185 PVPPHWHQRTRFLH 198 9***********97 PP == domain 2 score: -0.1 bits; conditional E-value: 0.11 DUF382 30 pvpshWsskreyl 42 pvp hW+++ ++ T099952_3 225 PVPPHWHQHTGFI 237 9******998876 PP == domain 3 score: 0.4 bits; conditional E-value: 0.075 DUF382 30 pvpshWsskreyl 42 pvp hW+++ ++ T099952_3 247 PVPPHWHQRTGFI 259 9*******99875 PP == domain 4 score: 1.6 bits; conditional E-value: 0.033 DUF382 29 vpvpshWsskreyl 42 pvp hW+++ ++ T099952_3 287 CPVPPHWHQRTGFI 300 69*******99886 PP == domain 5 score: -0.3 bits; conditional E-value: 0.13 DUF382 29 vpvpshWsskreyl 42 pvp hW++ +l T099952_3 309 CPVPPHWHQGTGFL 322 69*****9988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 3547.43 // Query: T324535_1 [L=642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3673.31 // Query: T324535_2 [L=642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-21 75.0 69.8 9.8e-17 60.8 7.7 12.0 11 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.1 0.14 2.3e+03 42 50 .] 2 10 .. 1 10 [. 0.87 2 ? -25.6 28.3 1 1.6e+04 38 38 .. 83 83 .. 35 158 .. 0.60 3 ? -2.0 0.3 0.25 4.1e+03 17 35 .. 179 197 .. 170 206 .. 0.76 4 ! 15.0 8.6 1.2e-06 0.019 18 50 .] 277 309 .. 262 309 .. 0.87 5 ! 19.9 1.6 3.6e-08 0.00059 22 50 .] 314 342 .. 310 342 .. 0.92 6 ! 60.8 7.7 6e-21 9.8e-17 1 50 [] 347 396 .. 347 396 .. 0.99 7 ? 1.4 0.1 0.021 3.4e+02 29 39 .. 396 406 .. 395 415 .. 0.87 8 ! 16.4 6.2 4.2e-07 0.0069 20 50 .] 419 450 .. 417 450 .. 0.90 9 ! 4.4 1.7 0.0025 40 27 46 .. 448 469 .. 446 471 .. 0.73 10 ? 0.8 0.1 0.032 5.2e+02 29 38 .. 473 482 .. 473 495 .. 0.73 11 ! 20.1 14.2 3.1e-08 0.00051 1 38 [. 500 559 .. 500 562 .. 0.97 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.14 DUF4705 42 gLsrPssCL 50 gL+ P sCL T324535_2 2 GLLMPNSCL 10 7999****8 PP == domain 2 score: -25.6 bits; conditional E-value: 1 DUF4705 38 l 38 l T324535_2 83 L 83 2 PP == domain 3 score: -2.0 bits; conditional E-value: 0.25 DUF4705 17 lqasglsrpsaqLpvAsaG 35 l+++g + ++a+++ A++ T324535_2 179 LAPRGCGGARAGPGDAPGR 197 7888888888888877665 PP == domain 4 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsr Lp++s+Gp lpp+ srP +CL T324535_2 277 PQVGLSRLTCSLPASSPGPALPPGCVSRPDCCL 309 789*****************************9 PP == domain 5 score: 19.9 bits; conditional E-value: 3.6e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssCL 50 l +++a L +A +Gp+lp+a+L rP+s L T324535_2 314 LDSAPAHLLAALVGPQLPEAKLPRPRSGL 342 5699***********************87 PP == domain 6 score: 60.8 bits; conditional E-value: 6e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa++++Lqap+ l+++g+s+ps++Lp++saG ++ ++gLsrPss+L T324535_2 347 PGSAPALQWRLQAPNGLRSVGSSTPSLGLPATSAGLNRAEVGLSRPSSSL 396 9************************************************8 PP == domain 7 score: 1.4 bits; conditional E-value: 0.021 DUF4705 29 LpvAsaGpklp 39 Lp+AsaG ++p T324535_2 396 LPAASAGLSRP 406 9******9986 PP == domain 8 score: 16.4 bits; conditional E-value: 4.2e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324535_2 419 VGLPGPSSVLSAASPGAKLPRVSLSRPSfSCL 450 67888**********************96676 PP == domain 9 score: 4.4 bits; conditional E-value: 0.0025 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324535_2 448 SCLPVASFGPAQlvALSGLPRP 469 8*********874544455555 PP == domain 10 score: 0.8 bits; conditional E-value: 0.032 DUF4705 29 LpvAsaGpkl 38 L vAs Gp+l T324535_2 473 LLVASSGPEL 482 7899999998 PP == domain 11 score: 20.1 bits; conditional E-value: 3.1e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpkl 38 +gpA as++ L+a +++l+asgl rps++L+ A++Gp++ T324535_2 500 TGPASASQWTLHAqlalaslrppqskapafrplwqSQLLPASGLFRPSSFLTTAFPGPVF 559 8*********************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 3532.02 // Query: T324535_3 [L=641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-14 53.2 98.3 0.0012 18.8 2.6 12.2 11 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.5 0.26 4.3e+03 14 24 .. 25 35 .. 13 57 .. 0.62 2 ? -0.7 0.3 0.099 1.6e+03 6 37 .. 141 188 .. 140 196 .. 0.62 3 ! 4.1 7.2 0.003 48 14 38 .. 282 307 .. 264 313 .. 0.79 4 ! 18.8 2.6 7.6e-08 0.0012 1 26 [. 336 360 .. 336 362 .. 0.95 5 ! 14.3 0.6 1.9e-06 0.032 1 13 [. 369 381 .. 369 389 .. 0.87 6 ! 15.7 0.9 7.2e-07 0.012 1 13 [. 390 402 .. 390 417 .. 0.92 7 ! 17.2 10.1 2.4e-07 0.0039 1 37 [. 422 470 .. 422 472 .. 0.95 8 ! 11.5 2.5 1.5e-05 0.25 1 25 [. 467 490 .. 467 492 .. 0.92 9 ! 6.1 6.0 0.00073 12 5 26 .. 493 513 .. 489 513 .. 0.97 10 ! 16.1 6.0 5.5e-07 0.0089 14 39 .. 524 549 .. 518 557 .. 0.88 11 ! 3.7 0.2 0.0041 67 2 19 .. 545 562 .. 545 565 .. 0.86 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 0.26 DUF4705 14 paslqasglsr 24 p++l+ +g+s T324535_3 25 PPTLRKVGMSP 35 56666666553 PP == domain 2 score: -0.7 bits; conditional E-value: 0.099 DUF4705 6 asrrpLqa................paslqasglsrpsaqLpvAsaGpk 37 as++pL a l a + +++ + A +G + T324535_3 141 ASHWPLPRgersa*apastghregGAGLHAGCREQAGTWPREAAVGRE 188 889998666666666555555555666666666666666666666655 PP == domain 3 score: 4.1 bits; conditional E-value: 0.003 DUF4705 14 paslqasg.lsrpsaqLpvAsaGpkl 38 p+sl+as+ + r+ ++Lp+As+Gp+ T324535_3 282 PDSLAASRhPLRAQLFLPAASPGPTA 307 88887765489*************86 PP == domain 4 score: 18.8 bits; conditional E-value: 7.6e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l+++g srp T324535_3 336 PGPGQASRWPLQ-DQLLPSNGVSRPQ 360 9***********.9***********7 PP == domain 5 score: 14.3 bits; conditional E-value: 1.9e-06 DUF4705 1 PgpAPasrrpLqa 13 P+pA+asrrpLqa T324535_3 369 PRPAWASRRPLQA 381 99**********7 PP == domain 6 score: 15.7 bits; conditional E-value: 7.2e-07 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T324535_3 390 PGPAPASRRPLQA 402 9***********6 PP == domain 7 score: 17.2 bits; conditional E-value: 2.4e-07 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpL pas+++ + +ps+ L vA++Gp T324535_3 422 PGPAPSSRRPLPVqnflesaspgpasPASQWPL-SAQPSSWLSVAFPGPA 470 9**********7788******************.89*************7 PP == domain 8 score: 11.5 bits; conditional E-value: 1.5e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 PgpA +++pLq ++ l +s++ ++ T324535_3 467 PGPAFDFWWPLQ-AQNLTSSRPLQA 490 9***********.*****9998776 PP == domain 9 score: 6.1 bits; conditional E-value: 0.00073 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp q ++ +++sgls+ps T324535_3 493 PASRRPAQ-AQPQPHSGLSTPS 513 9*******.************7 PP == domain 10 score: 16.1 bits; conditional E-value: 5.5e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l+ ++++ps++LpvAs Gp + T324535_3 524 PKLLPFGRFGSPSSCLPVASLGPAHS 549 8999*******************874 PP == domain 11 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 2 gpAPasrrpLqapaslqa 19 gpA s+rp qap l++ T324535_3 545 GPAHSSQRPFQAPFFLAS 562 8**********9988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3595.67 // Query: T256194_1 [L=2238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 12312.57 // Query: T256194_2 [L=2238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 11433.10 // Query: T256194_3 [L=2237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 11851.25 // Query: T110280_1 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 5953.77 // Query: T110280_2 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6181.64 // Query: T110280_3 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.21s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6181.64 // Query: T229995_1 [L=1437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.095 13.2 5.3 0.16 12.4 5.3 1.3 1 DUF883 Bacterial protein of unknown function (DUF883) 1.7 8.2 10.7 2.8 7.5 10.7 1.2 1 IncA IncA protein 5 7.2 14.9 7.2 6.7 14.9 1.1 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 5.7 6.8 11.3 8.2 6.3 11.3 1.1 1 OmpH Outer membrane protein (OmpH-like) 9.1 6.2 11.9 13 5.7 11.9 1.1 1 ADIP Afadin- and alpha -actinin-Binding Domain annotation for each model (and alignments): >> DUF883 Bacterial protein of unknown function (DUF883) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 5.3 5e-05 0.16 2 73 .. 369 443 .. 368 447 .. 0.83 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 5e-05 DUF883 2 eleaeleslladleellkeaadeageeaeelReraeea...lerarerlsdaeeavaerakeaaeaaddyVrenP 73 ele+ ++ l a+ e+l ++ +d +++e + lR+r ++a +are++++ +e+v++r +ea ++ + Vr++P T229995_1 369 ELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAqplQGEAREAARERAERVRRRLEEAERHKEYLVRKSP 443 678889999999999999999999999999988765542214699999999999999999999999999999998 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 10.7 0.00086 2.8 83 176 .. 346 438 .. 326 441 .. 0.77 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00086 IncA 83 lselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrl 176 +++ ++ l +l++ ++ ++r +ele+ + le + esl + l+++ +r sl ++ +++a+ ++ ++ ++e+ ++ r +le+ +++++l T229995_1 346 MAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEA-REAARERAERVRRRLEEAERHKEYL 438 56678888888888888888888888888888888888888888888888888888888888765544.6777777777777777776666666 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 14.9 0.0022 7.2 57 151 .. 347 438 .. 337 442 .. 0.80 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0022 Jnk-SapK_ap_N 57 eeleqLetekerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelv 151 +++++L +++++ + + ++ ++ele++ +e e + l++++++l e++r l + ++ ++ l+ + e +e ++ +r e +++ke++ T229995_1 347 AATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLL---RRRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEYL 438 67899************************************************...444455556666666666677777777777777777765 PP >> OmpH Outer membrane protein (OmpH-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 11.3 0.0025 8.2 27 110 .. 342 425 .. 338 437 .. 0.69 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0025 HHHHSHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS OmpH 27 ileespegkaaqkqlekef...kklqaeleakekelqkkqeelqkkakklekeekeqe.lqkkeqelqakqqqkaqqelqkkqqellk 110 + +++ ++++ ql+k ++++ele++ + l+++ e l++ ++ e+e+ l+++ q+ q +q +a +e +++++e ++ T229995_1 342 VSTAMAATQELLLQLQKDNrdgRQRKQELEKLMRGLEAESESLNQRLQD--LSERERSlLRRRSQAAQP-LQGEA-REAARERAERVR 425 5667777777777888777777888899999999999999999866666..556666656666666666.77777.666666666444 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 11.9 0.0041 13 37 124 .. 345 437 .. 336 442 .. 0.81 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0041 ADIP 37 iinviysLlqardrd....leqreslnetirkleaeierlqskierlk.tqleqlerelalvqakerqlekklktleqklknekeelqrlkna 124 +++ +Ll ++++d ++ +++l++ +r leae+e+l+++ + l+ ++ + l+r+ +++q + +++ + ++ + +++ ee++r k T229995_1 345 AMAATQELLLQLQKDnrdgRQRKQELEKLMRGLEAESESLNQRLQDLSeRERSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEY 437 56667778877777633334567899999******************94566777888889999999***************99999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 875 (0.0536612); expected 326.1 (0.02) Passed bias filter: 417 (0.0255734); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 7341.09 // Query: T229995_2 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7900.29 // Query: T229995_3 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-48 161.9 4.8 1e-47 161.0 4.8 1.3 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.0 4.8 6.4e-52 1e-47 16 121 .] 584 689 .. 580 689 .. 0.99 Alignments for each domain: == domain 1 score: 161.0 bits; conditional E-value: 6.4e-52 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelra 115 cd+qlr vq++++slmee+arad+e+rlfgg++a a+r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra T229995_3 584 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAIRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRA 683 69************************************************************************************************** PP TMEM191C 116 rGllPa 121 +GllP+ T229995_3 684 NGLLPT 689 *****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 7335.99 // Query: T372727_1 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-15 55.5 0.0 7.8e-15 54.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 5.6e-06 26.4 0.1 0.028 14.5 0.0 2.5 2 rve Integrase core domain 0.0004 20.2 7.1 0.00044 20.1 1.5 2.5 2 zf-CCHC Zinc knuckle 0.0041 16.7 12.1 0.08 12.5 2.3 2.7 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.8 0.0 1.9e-18 7.8e-15 1 220 [. 800 967 .. 800 969 .. 0.90 Alignments for each domain: == domain 1 score: 54.8 bits; conditional E-value: 1.9e-18 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkvpt 99 ++K++ +syR++ d++++n+ + +++ +p++ + l++ +++ ++++ lDlk+aF+++pl+ +++l+af+ + T372727_1 800 VQKPD-KSYRLV----QDLRLINQTVLP---------IHPVMPNLYTL-------------LSSIPSStTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTD 872 58***.*****7....7***********.........99999999999.............44445555****************************994 PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 + ++ +++ ++++lpq + SP f+ ++++ l +++ +l++Y+D +l+ s s e+ q++ v ++l g++++ T372727_1 873 L------------------DTHQ-SQQLTWAVLPQDFRDSPHYFSQALSNDLLSFHPS--ASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRVS 951 4..................4444.999*****************99998777777775..69************************************** PP GGG-EEE.....ESSEEETTE CS RVT_1 200 peKtklvlfsgkseevkyLGv 220 p+K ++ s +++ LG+ T372727_1 952 PSKAQIS-----SPSITHLGI 967 *******.....899999997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.3 0.0 0.00029 1.2 3 53 .. 1285 1332 .. 1284 1335 .. 0.85 2 ! 14.5 0.0 6.8e-06 0.028 97 118 .. 1375 1396 .. 1373 1397 .. 0.91 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00029 rve 3 rpgelwqvDvtvgripdgggkayllvv.iddfsrlilaeavsdemdastvia 53 +p + wq+D+t+++ + + k+ l v +d+f++++ a+++ +e +a tvi T372727_1 1285 APAQDWQIDFTHMP--QVR-KLKYLLV*VDTFTGWVEAFPTGSE-KATTVIS 1332 58999*********..444.688888999***************.8888876 PP == domain 2 score: 14.5 bits; conditional E-value: 6.8e-06 rve 97 trpgrpqdnGkvErfnrtlkde 118 + p+rpq+ GkvEr+n++lk++ T372727_1 1375 HTPYRPQSSGKVERTNGLLKTH 1396 78*****************986 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 1.5 1.1e-07 0.00044 2 16 .. 620 634 .. 619 635 .. 0.95 2 ? 2.7 0.4 0.034 1.4e+02 11 17 .. 651 657 .. 651 658 .. 0.95 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.1e-07 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 C++C + GH+a++C T372727_1 620 SCFKCRKSGHWAKEC 634 6************** PP == domain 2 score: 2.7 bits; conditional E-value: 0.034 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T372727_1 651 HWKSDCP 657 ******9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 2.3 2e-05 0.08 2 18 .. 618 634 .. 617 636 .. 0.93 2 ! 8.6 2.5 0.00033 1.4 1 20 [. 640 658 .. 640 660 .. 0.85 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2e-05 --B-TTT-SSBS-TTT- CS zf-CCHC_5 2 pglCpRCkkgkHwardC 18 +g C +C k Hwa++C T372727_1 618 SGSCFKCRKSGHWAKEC 634 688************** PP == domain 2 score: 8.6 bits; conditional E-value: 0.00033 ---B-TTT-SSBS-TTT--- CS zf-CCHC_5 1 ppglCpRCkkgkHwardChs 20 pp Cp C g+Hw++dC + T372727_1 640 PPKPCPICA-GTHWKSDCPA 658 67779*9*6.********65 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 9743.02 // Query: T372727_2 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 10327.60 // Query: T372727_3 [L=1805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-14 53.2 1.1 2.3e-14 52.9 1.1 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.9 1.1 1.4e-18 2.3e-14 474 561 .] 1407 1489 .. 1405 1489 .. 0.83 Alignments for each domain: == domain 1 score: 52.9 bits; conditional E-value: 1.4e-18 SHHHHHTS--------HHHHHHHHHHHHHHHHH..HHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 474 GlCaALkEeCCFyadksgivrdsiakLqerleq..rqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 GlC L+EeC Fy ++sg+v d+i+kL++r ++ q + ++ w l + w++++l +pL+ + L+Ll+GPc++ + q+i+ T372727_3 1407 GLCIFLNEEC-FYLNQSGLVYDNIKKLKDRGQKlaNQASNYAEPPW--ALSNWMSWVLPIL----SPLISVFLLLLFGPCVFCLVSQFIQ 1489 9********6.999***************97652133334445555..7888888888888....*****************99999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 9388.72 // Query: T278102_1 [L=758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 833 (0.0510855); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 3872.34 // Query: T278102_2 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 731 (0.0448301); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4086.13 // Query: T278102_3 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 636 (0.039004); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 3937.54 // Query: T117890_1 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 3683.32 // Query: T117890_2 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3399.99 // Query: T117890_3 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 3466.65 // Query: T218395_1 [L=465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00031 19.2 8.2 0.00043 18.7 8.2 1.2 1 Rrn6 RNA polymerase I-specific transcription-initiat ------ inclusion threshold ------ 2.2 8.7 4.7 4.8 7.5 4.7 1.5 1 DUF3682 Protein of unknown function (DUF3682) 2.3 6.7 20.9 3 6.3 20.9 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 2.6 6.1 18.2 3.5 5.7 18.2 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 8.2 1e-07 0.00043 697 823 .. 99 223 .. 21 229 .. 0.70 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1e-07 Rrn6 697 edpvaalsrytklikssplsls.revsniLshWevgsdpdeydwqrtessleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsksssss 795 + +v+ l++ l+++ +++++ + +niL +++++++e +++r +++ +++ +r+r+rr++++rrrr+++ + r+r+++ +++ + + + + s T218395_1 99 QGTVTELRSSGVLDQPGQQNKTsSLPKNILKKKKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRRRRRGRRRRRRRRRRRRGGGGGMGRGRGRGS 198 4555557777777777776666344677888877777777767777777776555566666666666666666666666666666666666666666666 PP Rrn6 796 ssqlpsssqvpvlpsfslsmqissSQvv 823 ss + + s+++vl +++ sSQ++ T218395_1 199 SSEVNAGSNQTVLWH---HPMTGSSQIG 223 666666666666666...6788999986 PP >> DUF3682 Protein of unknown function (DUF3682) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 4.7 0.0012 4.8 90 107 .. 129 146 .. 108 158 .. 0.61 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0012 DUF3682 90 htrqeeeEeeeenekqqq 107 ++++eeeEeeee++k+++ T218395_1 129 KKKKEEEEEEEEEKKRKK 146 345555555554555444 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 20.9 0.00075 3 114 171 .. 124 181 .. 97 208 .. 0.42 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00075 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 114 ekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekerer 171 k+ +kkk+ee+e e+ek+rk+k+ + ++rr + +++ + +++ ++ r + ++r r T218395_1 124 PKNILKKKKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRRRRRGRRRRRRRRR 181 2222222222222222222222222222222222222222222222222222221111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 18.2 0.00086 3.5 156 202 .. 131 175 .. 93 197 .. 0.43 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00086 CDC45 156 eeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrr 202 ++eee+eee++kkrk+k++++++++++++r+r+rrr++ +++ rrr T218395_1 131 KKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRR--RRRGRRR 175 11111111112222211111111111111111111111..1111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1629 (0.0999019); expected 326.1 (0.02) Passed bias filter: 703 (0.043113); expected 326.1 (0.02) Passed Vit filter: 200 (0.0122654); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 2333.84 // Query: T218395_2 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 10.5 6.0 0.23 10.1 6.0 1.1 1 NPR3 Nitrogen Permease regulator of amino acid transpo 0.97 8.0 5.0 1.4 7.5 5.0 1.2 1 Presenilin Presenilin 1.4 8.9 4.3 2 8.3 4.3 1.3 1 Eapp_C E2F-associated phosphoprotein 2.4 6.2 19.8 3.1 5.8 19.8 1.0 1 Nop14 Nop14-like family 6.3 7.2 20.6 11 6.4 20.6 1.4 1 PBP1_TM Transmembrane domain of transglycosylase PBP1 at 7.6 7.1 15.9 13 6.4 15.9 1.3 1 FYDLN_acid Protein of unknown function (FYDLN_acid) Domain annotation for each model (and alignments): >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 6.0 8.3e-05 0.23 49 96 .. 133 176 .. 121 237 .. 0.47 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 8.3e-05 NPR3 49 kkkkkskrkrssrskekkskesskksesssksesseekksskeseese 96 k+k++ +r+r++r+++ e+++++e+++++e++ee+++++e+ee+ T218395_2 133 KRKRRRRRRRRGRRRK----EEEEEEEEEEEEEEEEEEEEEEEEEEEG 176 1111111111111111....1111111111111111111111111111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 5.0 0.0005 1.4 264 306 .. 140 182 .. 84 225 .. 0.47 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0005 Presenilin 264 seksassseseeeeeeesaeaeseaeesseekeeeessessee 306 +++++++++eeeeeee++e+e+e+ee++ee+eeee ee T218395_2 140 RRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEEGGGGGEE 182 1111111111111111111111111111111111111111111 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 4.3 0.00075 2 81 114 .. 137 170 .. 129 237 .. 0.61 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00075 Eapp_C 81 sekkkkkkkkkkkkeekeeeaeaeeaeeeeeeee 114 ++++++ +++k++ee+eee+e+ee+eeeeeeee T218395_2 137 RRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEE 170 1222222222222222222222222222211111 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 19.8 0.0012 3.1 364 407 .. 149 196 .. 114 205 .. 0.40 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0012 Nop14 364 eseeeeeeeeedeeeeedeeeeeeeeededdlsdlese.....eeeeed 407 e+eeee eeee+eeeee+eeeeeeeee+ ++e e eeeee+ T218395_2 149 EEEEEE-EEEEEEEEEEEEEEEEEEEEEGGGGGEEEGEgegewEEEEEE 196 111111.111111111111111111111111111111122322222222 PP >> PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 20.6 0.004 11 11 53 .. 129 171 .. 129 197 .. 0.58 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.004 PBP1_TM 11 RkGkkskakparkkasrrrrrdddyddeyddeedddddddeee 53 R+ +k+k++ r+++ rrr+ +++ ++e ++ee+++++++eee T218395_2 129 RRRRKRKRRRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEE 171 5666666665566666655555544443333333333333333 PP >> FYDLN_acid Protein of unknown function (FYDLN_acid) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 15.9 0.0046 13 45 85 .. 136 185 .. 129 201 .. 0.29 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0046 FYDLN_acid 45 raaaaeaeeekkkkeaeedeedeeeeedvsdedadeeeee.........d 85 r+ +++++ +++k+e+ee+ee+eeeee++++e+++eeeee + T218395_2 136 RRRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEEgggggeeegE 185 22222222222222222222222222222222222222223565443220 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1319 (0.0808905); expected 326.1 (0.02) Passed bias filter: 637 (0.0390654); expected 326.1 (0.02) Passed Vit filter: 233 (0.0142892); expected 16.3 (0.001) Passed Fwd filter: 52 (0.00318901); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 2413.50 // Query: T218395_3 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.085 11.0 14.3 0.11 10.7 14.3 1.0 1 CDC45 CDC45-like protein 0.66 9.7 30.3 0.95 9.2 30.3 1.1 1 eIF3_subunit Translation initiation factor eIF3 subunit 1 9.5 24.7 1.6 8.9 24.7 1.2 1 PcfK PcfK-like protein 1.9 8.4 11.1 2.9 7.8 11.1 1.2 1 Eapp_C E2F-associated phosphoprotein 2 7.7 12.3 2.8 7.2 12.3 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 4.5 6.2 23.6 6.9 5.6 23.6 1.1 1 FLO_LFY Floricaula / Leafy protein 4.8 7.1 33.5 7 6.6 33.5 1.1 1 YL1 YL1 nuclear protein 9.9 6.5 15.5 17 5.7 15.5 1.3 1 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 14.3 5.2e-05 0.11 137 193 .. 141 198 .. 120 239 .. 0.47 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 5.2e-05 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeee...edeeersrkrrrse 193 ee e+++e++++++++++++++++++++kkkrk+k++eeee+ + + + +rkr+r++ T218395_3 141 EE--EEEEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKkkgRGRGNGKRKRKRKQ 198 22..22222222222223333333333333344433333333322222223333333333 PP >> eIF3_subunit Translation initiation factor eIF3 subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 30.3 0.00047 0.95 38 81 .. 141 183 .. 123 199 .. 0.47 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00047 eIF3_subunit 38 daeeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrk 81 ++eeeee++k+k+kk++++k+k++k+kkkk+kk+k +e+e ++k T218395_3 141 EEEEEEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEE-KKK 183 3334444333333333333333333333333333333333.111 PP >> PcfK PcfK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 24.7 0.00077 1.6 67 120 .. 124 181 .. 120 186 .. 0.47 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00077 PcfK 67 veYfeeddievtk......eeekaekradavskkqkekkkakkkkpeeekkkkkkkekke 120 ++Yfee++ + eee++ek++++++kk+k+kkk+kkkk+ +++kkkk++e+++ T218395_3 124 KKYFEEEEGRG-RgggggeEEEEEEKKKKKKKKKKKKKKKKKKKKK-KKRKKKKEEEEEK 181 589*9999544.3599995333344443333333333333333333.2222222222222 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 11.1 0.0014 2.9 81 113 .. 149 181 .. 140 230 .. 0.49 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0014 Eapp_C 81 sekkkkkkkkkkkkeekeeeaeaeeaeeeeeee 113 ++kkkkkkkkkkkk++k++++++++++eeeee+ T218395_3 149 KKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEK 181 111111111111111111111111111111111 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 12.3 0.0014 2.8 29 66 .. 145 182 .. 125 218 .. 0.47 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0014 SpoIIP 29 keekekeeeeeeekeeeeeeeikkeekeeekekeedse 66 +eek+k+++++++k+++++++ kk++++++ke+ee+++ T218395_3 145 EEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKK 182 11111111111111111111111111111111111111 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 23.6 0.0034 6.9 150 223 .. 123 195 .. 119 198 .. 0.52 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0034 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX.XXXXXXXX-- CS FLO_LFY 150 eepvqqekeaagsGGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag.gsgggerqre 223 + +e+e+ g GG g +ee ++++k+kk++++kk++++k+ +++ ++ ++ +++ee+e+++g g+g+g+r+r+ T218395_3 123 TKKYFEEEEGRGRGGGGGEEEEEEEKKKKKKKKKKKKKKKKKKKKK-KKRKK-KKEEEEEKKKGrGRGNGKRKRK 195 5556678888888887776665555555555544443343333333.33333.3333334444414555888875 PP >> YL1 YL1 nuclear protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 33.5 0.0034 7 53 123 .. 128 196 .. 120 199 .. 0.36 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0034 xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF YL1 53 dsdeedee....seeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidpak.eprpkkks 123 +++e + ++e+eee+ek+ ++++kk+kk+ kk+k++kkk+k+kkkk+++++kk +++ + ++k+k+ T218395_3 128 EEEE---GrgrgGGGGEEEEEEEKK--KKKKKKKKKK-KKKKKKKKKKKRKKKKEEEEEKK-KGRGRgNGKRKRKR 196 3333...234554555555555553..2222222222.33332333333333333333333.12222122222222 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 15.5 0.0083 17 39 79 .. 142 182 .. 112 197 .. 0.47 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0083 RNA_pol_Rpc4 39 kaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklks 79 ++eee+k++k++++++++kk+kkk++kkk+kkk++++++k+ T218395_3 142 EEEEEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKK 182 22222222222222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2529 (0.155096); expected 326.1 (0.02) Passed bias filter: 1013 (0.0621244); expected 326.1 (0.02) Passed Vit filter: 432 (0.0264933); expected 16.3 (0.001) Passed Fwd filter: 63 (0.00386361); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 2249.87 // Query: T352327_1 [L=4734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-119 397.0 17.2 3.1e-118 394.7 17.1 1.8 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 394.7 17.1 1.9e-122 3.1e-118 103 361 .. 4176 4418 .. 4160 4425 .. 0.95 Alignments for each domain: == domain 1 score: 394.7 bits; conditional E-value: 1.9e-122 ..XXXXXXXXXXXXXXXXX..................XXHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE CS Transposase_22 103 nkellelktkvdelkkeqseatleietlgkrsgtidaslssr..ideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlr 193 kel+elk+k++el +e++ sl r +d+leervs +ede+++++re+k+rekr+k++eqslq+i+d+vkrPnlr T352327_1 4176 LKELMELKAKARELCEECR------------------SL--Rs*CDQLEERVSVMEDEMNKMKREGKFREKRIKRNEQSLQEIWDYVKRPNLR 4248 4788888888888888888..................44..6589************************************************ PP EES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE- CS Transposase_22 194 liGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltad 286 liG++es+ e+++klen+l++ii+enfPnl+++an++iqei+rtP+r++s+ra++rh+ivr+tkv++k+k+l+a+rekGrvt kGkPirltad T352327_1 4249 LIGIPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRTPQRYSSRRATPRHVIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTAD 4341 ********************************************************************************************* PP --HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 287 lsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 lsae l+arrew+++++i+kek+fqPr++yPakls+i++Geik+f dk++lrd ++trPalk+llke ++er+++y T352327_1 4342 LSAEILQARREWGPIFNIFKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDSVTTRPALKELLKEalNMERNNQY 4418 *******************************************************************9999999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.31s 00:00:01.56 Elapsed: 00:00:00.62 # Mc/sec: 21843.82 // Query: T352327_2 [L=4734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-16 59.9 4.8 2.4e-16 59.5 4.8 1.1 1 Transposase_22 L1 transposable element 6.4e-06 26.3 0.0 1.1e-05 25.5 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 7.4e-06 25.7 1.4 1.3e-05 24.9 1.4 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.2 11.3 2.3 0.36 10.4 2.3 1.4 1 ISK_Channel Slow voltage-gated potassium channel Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.5 4.8 5.8e-20 2.4e-16 1 75 [. 4091 4160 .. 4091 4161 .. 0.95 Alignments for each domain: == domain 1 score: 59.5 bits; conditional E-value: 5.8e-20 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alk 75 +Gkk+ rk++nsk +++s+P+k++sssPa e+++ ++df+elr+e++++++yk l+ +i++kake++ ++k T352327_2 4091 MGKKQ---SRKTGNSKKQSTSPPPKDHSSSPAV--EQSWTENDFDELREEGFRRSNYK-LQKEIQTKAKEVKnFEK 4160 79999...9************************..**********************8.677799******97877 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 2.8e-09 1.1e-05 18 87 .. 4472 4622 .. 4469 4678 .. 0.70 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 2.8e-09 HHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF Exo_endo_phos 18 saaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................................ 77 +++la+++k++d+ v ++qE++ ++ + + + ++ + ++++ gva+l++ + + + T352327_2 4472 KDRLANWIKSQDPSVCCIQETHLTCRDTDRIKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimvk*siqqeeltilniyap 4565 799*****************9887766665555776677888899999***********7777888**************************** PP ......................EEEEEE-SS.........................- CS ......................xxxxxxxxx.........................x RF Exo_endo_phos 78 ......................vivlGDfNa.........................r 87 +++GDfN+ T352327_2 4566 ntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrstrqkvnkdtqelnsalhQ 4622 ******9999999999999999999******88833333333333333333333330 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 1.4 3.1e-09 1.3e-05 2 118 .. 4558 4681 .. 4557 4682 .. 0.81 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 3.1e-09 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkegptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + +++++ ++ +eL + l++ +l + + + ++ tf s + T352327_2 4558 TILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQADLIDIyrtlHPTSTEYTFFSAPHh 4647 7999***9999.777777778888888876.89**************9888879***************99656663333344777665555 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s i ++ s+ l+ + ++ ++++SDH++i T352327_2 4648 tYSKIYHIVGSKALLSKrkRTEIITNYLSDHSAI 4681 67999999999999999997777799*****998 PP >> ISK_Channel Slow voltage-gated potassium channel # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 2.3 8.7e-05 0.36 36 69 .. 14 47 .. 8 49 .. 0.92 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 8.7e-05 ISK_Channel 36 dklevlyillllgffgfftlGimlsyirskkleh 69 ++l ++y+llll ff ff +++ +++s +leh T352327_2 14 SQLVAVYLLLLLLFFFFFCQELLICFVKSLHLEH 47 6899****************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.62 # Mc/sec: 21843.82 // Query: T352327_3 [L=4734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 22954.52 // Query: T258635_1 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:00.77 # Mc/sec: 18940.92 // Query: T258635_2 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.088 13.0 0.2 7.1 6.8 0.0 2.8 2 RWD RWD domain Domain annotation for each model (and alignments): >> RWD RWD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.0078 1.3e+02 46 92 .. 395 457 .. 322 464 .. 0.74 2 ? 6.8 0.0 0.00044 7.1 24 78 .. 484 547 .. 471 573 .. 0.77 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.0078 ...................TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHHHHHHHH CS x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF RWD 46 e................feekkkpslkleiklpeeYPeeaPiislsstenlpkeqvksleekl 92 + ++ lkl+ ++p+ P +P+ + s++++++ + ++le++l T258635_2 395 LklehqlrnpqtgtsapHRVSSCTALKLQHHFPPACPAAPPQTATSAPRWISSSMALNLEHQL 457 0333444455555556688899999************************99999999888887 PP == domain 2 score: 6.8 bits; conditional E-value: 0.00044 --EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTT.........SS--EEEEEECC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxx RF RWD 24 enysikleikikldededeedkefeekkkpslkleiklpeeYP.........eeaPiislsste 78 +n++i+ + +i+l++++ + + + lkle +lp YP +++P ++l+ ++ T258635_2 484 SNWNISSTPGIQLHSPQTGTSAPCRVSRCTALKLEHQLPAGYPaarpsnwniSSPPGLQLHGPH 547 7999999*********9998888********************655555555555555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.52u 0.37s 00:00:01.89 Elapsed: 00:00:00.68 # Mc/sec: 21447.81 // Query: T258635_3 [L=5098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.35s 00:00:01.93 Elapsed: 00:00:00.77 # Mc/sec: 18940.92 // Query: T258776_1 [L=1385] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1385 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.46 # Mc/sec: 8613.59 // Query: T258776_2 [L=1385] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.3 8.9 9.0 2.1 8.2 9.0 1.3 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 9.0 0.00013 2.1 94 120 .. 22 48 .. 20 58 .. 0.42 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00013 Trypan_PARP 94 eeeepepepetepepepepepepepep 120 ++++p+p+p+++p+p+ +p+p+p+p+p T258776_2 22 PNPNPNPNPNPNPNPNANPNPNPNPNP 48 222333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1385 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 7204.09 // Query: T258776_3 [L=1385] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.6 2.5 8 6.5 0.1 3.2 3 Opiods_neuropep Vertebrate endogenous opioids neuropeptide Domain annotation for each model (and alignments): >> Opiods_neuropep Vertebrate endogenous opioids neuropeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 0.49 8e+03 35 46 .. 447 458 .. 446 458 .. 0.82 2 ? 5.8 0.2 0.00082 13 27 45 .. 520 538 .. 517 540 .. 0.92 3 ? 6.5 0.1 0.00049 8 27 46 .. 540 559 .. 539 560 .. 0.93 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.49 Opiods_neuropep 35 sskeWelCkkal 46 ++ +W C+ +l T258776_3 447 PAGSWGHCRALL 458 7789****9886 PP == domain 2 score: 5.8 bits; conditional E-value: 0.00082 Opiods_neuropep 27 leCegklssskeWelCkka 45 eC + +++ +W +C+++ T258776_3 520 SECSRRTPPAGSWGRCRDF 538 49***************97 PP == domain 3 score: 6.5 bits; conditional E-value: 0.00049 Opiods_neuropep 27 leCegklssskeWelCkkal 46 + C g+ ++ W lC+++l T258776_3 540 WHCRGSTLPAGRWGLCRDLL 559 78***************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1385 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 5826.84 // Query: T337275_1 [L=2354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.74 # Mc/sec: 9100.53 // Query: T337275_2 [L=2354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.69 # Mc/sec: 9759.99 // Query: T337275_3 [L=2353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 9755.84 // Query: T012273_1 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 1934.70 // Query: T012273_2 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.63 8.7 10.5 0.82 8.4 10.5 1.0 1 DUF812 Protein of unknown function (DUF812) Domain annotation for each model (and alignments): >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 10.5 5e-05 0.82 320 406 .. 62 153 .. 48 168 .. 0.90 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 5e-05 DUF812 320 kteteeelrkkreeeleelqekleeleskieeleeelkklessikqieeeleeekeeneel.....ekelklkkktlellpdaeeniekLqa 406 ++e+el +++e e ++l++++e+++s++ee + +lk+ +i eee+ +kee+ee+ + lkkk e+lp +++ ++L + T012273_2 62 GLKEEKELSQPKEGEATDLKKEVEKISSSEEEETVNLKEEVEKIPPPEEETMDLKEEKEEIpppevREATGLKKKQEEILPPEDGEAAALSS 153 6789*********************************************************99999999***********999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 754 (0.0462406); expected 326.1 (0.02) Passed bias filter: 364 (0.0223231); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.68 # Mc/sec: 1674.43 // Query: T012273_3 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1997.56 // Query: T338272_1 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 3881.34 // Query: T338272_2 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 4263.11 // Query: T338272_3 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 4194.35 // Query: T036538_1 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-40 136.6 0.3 1.6e-39 135.9 0.3 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 7e-10 39.1 0.1 1.7e-05 24.9 0.0 2.4 2 RNase_H RNase H ------ inclusion threshold ------ 1.5 7.3 41.6 2.5 6.6 41.6 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.9 0.3 2.9e-43 1.6e-39 400 560 .. 1690 1847 .. 1679 1848 .. 0.91 Alignments for each domain: == domain 1 score: 135.9 bits; conditional E-value: 2.9e-43 XXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHH.H..HHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHH CS TLV_coat 400 lallLgGLgiaagvgtGttgl.vstqqfkkLqaalekDvqaleesIs.k..leksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgiv 493 l++lL GLg+a+++gtG++ l s+ ++ L+ + +q++++sI+ l +++sla lQN RGLDlL++e+GGlC+ L EeCCFy +++giv T036538_1 1690 LIPLLIGLGMATATGTGIASLsTSLSYYHTLSKDFSDSLQEITKSIQ*G**LRSQIDSLAAATLQNCRGLDLLTAEKGGLCTFLGEECCFYTNQAGIV 1787 99*******************9************************8879999********************************************* PP HHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXX...XXX....XXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 494 rdsiakLqerleqrqrllednqlwfegllglspwlt...tllstilgpLlllLLiLllGPcilnrLvqli 560 rd +Lqe+ ++ ++ l +++ +l w+t ++l gp+ +LL+L++GPci+n v+++ T036538_1 1788 RDAAWRLQEKASEIRQRLS------NSYTNLWSWVT*llPFL----GPVTSILLLLTFGPCIFNLFVKFV 1847 *********9887554443......44557889975544999....**********************98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 3.2e-09 1.7e-05 40 89 .. 1274 1322 .. 1270 1333 .. 0.84 2 ! 11.8 0.0 3.5e-05 0.19 9 72 .. 1562 1626 .. 1560 1653 .. 0.77 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 3.2e-09 CEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTS CS RNase_H 40 aqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknaw 89 ++++ aEL A++ aL+ ++ ++n+ytDSkY++ ++ + wk+++ T036538_1 1274 GTSAQLAELVALTRALElG--KERRINVYTDSKYAYLILHAHAAIWKERGF 1322 799**************55..889************988887888877765 PP == domain 2 score: 11.8 bits; conditional E-value: 3.5e-05 EEEEECTTTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HH CS RNase_H 9 DGsclgnsgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLkalksdekvniytDSkY 72 DGs+ + ++++ g+ v +ke+ +++ +l++ ++++ EL A+ + Lk l++ ++ iyt Sk T036538_1 1562 DGSSPEIKEKRHNGYsVSDKETlEETELGKLPNNWSAQTCELLALSQTLKYLQN-QEEAIYTISKI 1626 9**9999********666777755577799999*****************8754.55668887764 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 41.6 0.00045 2.5 85 180 .. 1374 1469 .. 1344 1475 .. 0.68 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00045 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 85 kgeskgkaaktkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekk 180 +g++ k+++++ e++ k +++ +r +++ee ++ ++ke+++e++r+ k+++ e+ r+++ke+e+++ ++ke++r++ ++rer+++ ++++k T036538_1 1374 QGKTSRKEGEKETDREKERKRQRQRSQRGRQREEETERLKVKERRRERKRQTKKSQRERNRKSKKERERQRGSQKERERQRRSQRERKRDGNSKEK 1469 344445555555555555555555556666666777777777777777777777777777777777777777777777777777777777777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1496 (0.0917454); expected 326.1 (0.02) Passed bias filter: 475 (0.0291304); expected 326.1 (0.02) Passed Vit filter: 174 (0.0106709); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.30u 0.49s 00:00:02.79 Elapsed: 00:00:00.92 # Mc/sec: 7363.53 // Query: T036538_2 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-21 75.7 0.1 5.7e-21 74.9 0.1 1.3 1 Gag_p30 Gag P30 core shell protein 7.3e-05 22.9 0.0 0.015 15.4 0.0 2.4 2 RVP Retroviral aspartyl protease 0.00084 19.2 0.9 0.0023 17.8 0.9 1.8 1 zf-CCHC Zinc knuckle 0.0015 18.1 0.2 0.003 17.1 0.2 1.3 1 Gag_MA Matrix protein (MA), p15 ------ inclusion threshold ------ 0.064 12.8 0.4 0.13 11.8 0.4 1.5 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.9 0.1 1.8e-24 5.7e-21 39 209 .. 634 813 .. 630 815 .. 0.85 Alignments for each domain: == domain 1 score: 74.9 bits; conditional E-value: 1.8e-24 Gag_p30 39 qptwddcqqllqtlltteerqrvlleark.....nvpgedgrptql.pnev...deafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakv 129 + tw d ll+ l+ +e++ l ar n+ + r t +++ ++a p+ +wd ++ +g s k +l g r ++p n + T036538_2 634 NLTWRDVMLLLDHTLAFNEKNAALAAAREfgdtwNLSQVNDRMTAEeRDKFptgQQAVPIMDLQWDLNSDHGYWSCKHLLICVLEGQRRIRKKPVNYLMM 733 66999999999999999999999999986333333433344444330333222267899999***************9999******************* PP Gag_p30 130 kevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkr 209 +++qgkee+p+aflerl+ea r+ytp p++ e + + fi qsa+dir+ lq+ e++l+ l++ a v++ + T036538_2 734 STITQGKEENPSAFLERLREALRKYTPLSPDSLEGQLILKGKFIIQSATDIRRELQKRALGPEQNLEALLNLATSVFYDK 813 ********************************************************99999999*********9999875 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.8 0.0 0.0096 31 4 29 .. 931 956 .. 929 962 .. 0.90 2 ! 15.4 0.0 4.7e-06 0.015 41 100 .. 983 1041 .. 976 1042 .. 0.86 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0096 SSEEEEEETTEEEEEEE-TTBSSEEE CS RVP 4 rPllkvkiggkyieallDtGAdatvi 29 +P + + i+g+ i +llD+G +v+ T036538_2 931 EPQVCLTIEGQEIDFLLDSGMAFSVL 956 699999**************999887 PP == domain 2 score: 15.4 bits; conditional E-value: 4.7e-06 .EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 41 kkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++++++qGi+g+ +++s+ + + f++ +l++pe+ +llGrd+L k g+ + T036538_2 983 SSRSVTIQGILGQPiTRYFSHLLSCNSDALLFSH--DFLVMPESSTPLLGRDILAKAGAII 1041 678899******9967888888888888889999..*******************998765 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.9 7e-07 0.0023 1 17 [. 857 873 .. 857 874 .. 0.93 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 7e-07 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 r+Cy CG GH+++dCp T036538_2 857 RACYQCGLQGHLKKDCP 873 58**************9 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.2 9.1e-07 0.003 29 83 .. 456 511 .. 441 513 .. 0.81 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 9.1e-07 --HHHHHHHHHTTGGGGSS....S--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHH CS Gag_MA 29 vrkkklitlCsseWptlnv....gWPreGtfdltviakvkskvfspGkeGhpDqvpYiv 83 ++k+ li +C++ Wp ++ +WP+eG+ + ++i+++ +f++G eG +pY+ T036538_2 456 LKKRWLIFFCTTAWPQYSLsdgeKWPPEGSINYNTILQLD--LFCKG-EGKWSEIPYVQ 511 577888899******997644447************9985..78885.68888999986 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.4 4e-05 0.13 32 48 .. 857 873 .. 856 874 .. 0.92 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 4e-05 zf-CCHC_4 32 rfCfiCgllGHsdkeCp 48 r C+ Cgl GH +k+Cp T036538_2 857 RACYQCGLQGHLKKDCP 873 78**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 557 (0.0341592); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.70 # Mc/sec: 9677.78 // Query: T036538_3 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1387 (0.0850607); expected 326.1 (0.02) Passed bias filter: 404 (0.0247762); expected 326.1 (0.02) Passed Vit filter: 175 (0.0107322); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.44s 00:00:02.58 Elapsed: 00:00:00.82 # Mc/sec: 8261.52 // Query: T377435_1 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-122 407.6 22.1 4.9e-108 361.1 10.2 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 4.0 2.3e-18 3.7e-14 1 121 [. 339 443 .. 339 447 .. 0.85 2 ! 361.1 10.2 3e-112 4.9e-108 146 367 .. 450 673 .. 449 674 .. 0.99 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 2.3e-18 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX...... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkeliesk...akelealkekeentekqlkiikekq 92 +Gkk+ rk +nsk +++s+P+ke ss Pa e+++++ df+elr+e+++ ++++elke+++++ ak+le k ++e + i k T377435_1 339 MGKKQ---SRKAENSKNQSTSPPPKECSSLPAM--EQSWMESDFDELREEGFRGSNFSELKEEVRTQ*k*AKNLE--KRLDEWLTRMTSIE--KS 424 79999...9************************..*******************************999999875..77888666666632..22 PP ............XXXXXXXXXXXXXXXXX CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqs 121 ++l+elkt + el++e+ T377435_1 425 ----------LNDLMELKTMAGELHDECT 443 ..........2367888888888887775 PP == domain 2 score: 361.1 bits; conditional E-value: 3e-112 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 d+leervs +e +i+e+++e k+rekr+k++eqs+q+ d +krPnlrliGv+ese e+++klen+l++ii+enfP l+++an++iqei+ P+ T377435_1 450 DQLEERVSVIEGQINEMKQEEKFREKRVKRNEQSFQE-I*DCMKRPNLRLIGVPESEGENGTKLENTLQDIIQENFPKLARQANIQIQEIQGMPQ 543 89**********************************9.5668***************************************************** PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidk 334 r++s+ra++rh+ivr+tkv++k+k+l+a+rekGrvt kGkPirltad+saetl+a rew+++++il+ek+fqPr++yP kls+i+ Geik+f dk T377435_1 544 RYSSRRATPRHLIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADISAETLQATREWGPIFNILQEKNFQPRISYPVKLSFISVGEIKYFTDK 638 *********************************************************************************************** PP HHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 335 tklrdylstrPalkrllke..knerkdryqaleqa 367 ++lrd+++trPalk+llke ++er+++yq+l+++ T377435_1 639 QMLRDFVTTRPALKELLKEalNMERNNQYQSLQKH 673 *********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 6975.38 // Query: T377435_2 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 6870.14 // Query: T377435_3 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-43 148.3 1.2 2e-43 148.3 1.2 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.2 0.1 1.6e+03 179 206 .. 977 1006 .. 969 1024 .. 0.82 2 ! 148.3 1.2 1.3e-47 2e-43 18 222 .] 1235 1469 .. 1233 1469 .. 0.95 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.1 H..HHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 179 e..lqelleaveewlkesglkinpeKtklv 206 + q+l++++++ ++ +++n++K k T377435_3 977 DttYQNLWDTFKAVCRVKFIELNAHKRKQE 1006 245999********************8865 PP == domain 2 score: 148.3 bits; conditional E-value: 1.3e-47 -THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET............. CS RVT_1 18 dykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflst 111 +k+l+k++a+r+++ ++kl++++ +gf p + + ++ +++++ ++ k k+++++++D +kaFd+++ +++l++l++++++ + +++i++++ + T377435_3 1235 ECKILSKILANRIQQNMKKLFHHDPVGFIPEMQGWFNIcksiNVIQHVNRTKDKNHMIISIDAEKAFDKIQQPFILKTLNKLGIDGTYLKIIRAIYDK 1332 69***************************************99999999999999******************************************* PP ............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BE CS RVT_1 112 rsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkin 199 +++++ +ng++ e ++ k+g++qG++lSP+lfn++++ l r +r++ ++v+l+++aDD++++ +s ++q+ll+ ++++ k sg+kin T377435_3 1333 PTANIILNGQKLEAFPLKTGTRQGCPLSPFLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLESpIVSAQNLLKLISNFRKVSGYKIN 1430 **********99*********************************99***************************6677******************** PP GGG-EEE.....................ESSEEETTEEE CS RVT_1 200 peKtklvlf...........sg.....kseevkyLGvtl 222 +K +++l+ s+ s+++kyLG++l T377435_3 1431 VQKLQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 1469 *******99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1151 (0.0705875); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.77 # Mc/sec: 6156.36 // Query: T077422_1 [L=985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 4144.00 // Query: T077422_2 [L=985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 5123.49 // Query: T077422_3 [L=984] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (984 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 3964.87 // Query: T221964_1 [L=2863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 12600.86 // Query: T221964_2 [L=2862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.30s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 11866.23 // Query: T221964_3 [L=2862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 11866.23 // Query: T353450_1 [L=2305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1397 (0.085674); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 136 (0.00834049); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.35s 00:00:02.25 Elapsed: 00:00:00.79 # Mc/sec: 8347.11 // Query: T353450_2 [L=2305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1128 (0.069177); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.40s 00:00:01.93 Elapsed: 00:00:00.84 # Mc/sec: 7850.25 // Query: T353450_3 [L=2304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1219 (0.0747578); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.40s 00:00:01.94 Elapsed: 00:00:00.74 # Mc/sec: 8907.23 // Query: T138137_1 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.72 # Mc/sec: 14657.78 // Query: T138137_2 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.70 # Mc/sec: 15076.57 // Query: T138137_3 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.81 # Mc/sec: 13029.14 // Query: T047714_1 [L=418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.31 10.9 5.2 0.67 9.9 5.2 1.5 1 YqzE YqzE-like protein 0.35 9.1 2.5 0.45 8.7 2.5 1.1 1 Rrn6 RNA polymerase I-specific transcription-initiation Domain annotation for each model (and alignments): >> YqzE YqzE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 5.2 8.2e-05 0.67 13 42 .. 156 185 .. 156 191 .. 0.87 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 8.2e-05 YqzE 13 fVkymdtPkeeRkkkkeekkeekepfsyrw 42 +V ym + +++kkkk++kk++k+ ++ w T047714_1 156 LVPYMTQMAQKKKKKKKKKKKKKKALQLGW 185 589****99999999999999999887655 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 2.5 5.6e-05 0.45 816 847 .. 143 179 .. 120 180 .. 0.75 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 5.6e-05 Rrn6 816 qissSQvvsss.......mSQverGvFgsRpakkKKKRk 847 q+ SQ+ ++s m+Q+ +++ +++++kkKKK+k T047714_1 143 QPGHSQT-EKSly*lvpyMTQMAQKK-KKKKKKKKKKKK 179 6788999.4457***********977.444444555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1135 (0.0696063); expected 326.1 (0.02) Passed bias filter: 692 (0.0424384); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 2061.77 // Query: T047714_2 [L=417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 758 (0.046486); expected 326.1 (0.02) Passed bias filter: 434 (0.026616); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 2294.17 // Query: T047714_3 [L=417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 625 (0.0383294); expected 326.1 (0.02) Passed bias filter: 413 (0.0253281); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2092.92 // Query: T089227_1 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 4602.95 // Query: T089227_2 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.3 0.3 0.00026 20.4 0.3 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.3 1.6e-08 0.00026 3 19 .] 927 943 .. 926 943 .. 0.96 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 1.6e-08 DUF1725 3 agKWMELEnIILSEisQ 19 ag+WMELE ILS+ +Q T089227_2 927 AGTWMELEVLILSKQTQ 943 8************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 5055.70 // Query: T089227_3 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-07 29.8 0.0 1.2e-06 28.6 0.0 1.6 1 rve Integrase core domain ------ inclusion threshold ------ 0.017 14.8 0.1 0.044 13.4 0.0 1.7 2 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.0 1.4e-10 1.2e-06 54 117 .. 32 94 .. 30 96 .. 0.90 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 1.4e-10 rve 54 lleravarfggvepervlsDngseytskafreflael.girvsftrpgrpqdnGkvErfnrtlkd 117 l++ a +++g p+ + sDng++++ ++ + a gi+++++ ++rpq+ Gkv r+nrt+k+ T089227_3 32 LHQDAQMWRFGL-PLPIGSDNGPAFV-ADLVQKTAMV*GITWKLHTTYRPQSSGKVDRMNRTIKN 94 78899999***9.*************.567777788899************************98 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 5.3e-06 0.044 2 31 .. 68 97 .. 68 110 .. 0.89 2 ? -3.6 0.1 1.1 9.1e+03 52 62 .. 528 538 .. 527 540 .. 0.88 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.3e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdell 31 gi++++ ++Pq g+v ++n+t+++ l T089227_3 68 GITWKLHTTYRPQSSGKVDRMNRTIKNSLG 97 79************************9875 PP == domain 2 score: -3.6 bits; conditional E-value: 1.1 rve_3 52 dYNteRPHssL 62 +YN++ P ssL T089227_3 528 HYNCRAPSSSL 538 8******9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 5317.20 // Query: T278099_1 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 922 (0.0565436); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.78 # Mc/sec: 2156.63 // Query: T278099_2 [L=587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 835 (0.0512081); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 2544.40 // Query: T278099_3 [L=587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 729 (0.0447075); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 2623.92 // Query: T236810_1 [L=7242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-27 93.7 1.5 1.8e-25 89.6 0.1 2.2 2 Gag_p30 Gag P30 core shell protein 2.6e-15 56.5 0.0 4.5e-15 55.8 0.0 1.3 1 rve Integrase core domain 4.6e-10 39.3 0.0 6.9e-10 38.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.1 0.012 64 16 40 .. 1975 1999 .. 1970 2001 .. 0.92 2 ! 89.6 0.1 3.2e-29 1.8e-25 83 185 .. 2043 2145 .. 2029 2151 .. 0.92 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.012 Gag_p30 16 nnpsfsedpqkltaliesillthqp 40 + ps++++pq+l l+++++ th+p T236810_1 1975 DTPSYTKKPQALMDLLQTVIQTHKP 1999 68**********************9 PP == domain 2 score: 89.6 bits; conditional E-value: 3.2e-29 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdi 180 + +p t +wd + +g ++l+ yr++ll gl+ a++ tn+ kv e +qgk+espa f +rl+eayr+ytp+dp + e++ + ++++ qsa di T236810_1 2043 MRIQLPGTDAEWDPNERQGMQRLNRYRKALLEGLKKGAQKVTNVNKVSEAIQGKDESPAQFYKRLREAYRMYTPFDPSSLENQHMINMALVSQSAEDI 2140 456789999***************************************************************************************** PP Gag_p30 181 rkklq 185 ++ ++ T236810_1 2141 KENFK 2145 *9865 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.8 0.0 8.4e-19 4.5e-15 4 117 .. 3186 3300 .. 3184 3302 .. 0.88 Alignments for each domain: == domain 1 score: 55.8 bits; conditional E-value: 8.4e-19 rve 4 pgelwqvDvtvgripdgggkayllvviddfsr.....lilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsf 96 p e +qvD+t+++ + gg++yllv + ++s+ + ++++++e ++ +v++++ r + ++g p+ + sDn ++++ +++ ++ lgi++++ T236810_1 3186 PFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGgggggGVEVCPTRTE-KTLEVTCVILRDLIPRFGL-PLQIDSDNRLAFVADLVQKTAKVLGITWKL 3279 77889********..9999************7333336999999999.6777777777777777777.****************************** PP rve 97 trpgrpqdnGkvErfnrtlkd 117 + ++rpq+ GkvE++n+t+k T236810_1 3280 HTTYRPQSSGKVEQMNQTIKS 3300 *******************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.0 1.3e-13 6.9e-10 122 222 .] 2567 2662 .. 2555 2662 .. 0.91 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 1.3e-13 ..TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEET CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyL 218 + ++++ ++ lpqG+++SP++f ++ +l + + g+ ll Y+DD+l+ + + + + +++ ++l+++g+k+ ++K +++ +++v yL T236810_1 2567 RCHHSVPWTQLPQGFKNSPTIFGGVLA*DLQKFPTRD-LGCLLLEYIDDLLLGHPTAVGCAKGTDTLLQHLEDCGYKVPKKKAQIC-----RQQVSYL 2658 5678999******************988887766665.69**********************************************.....9****** PP TEEE CS RVT_1 219 Gvtl 222 G+t+ T236810_1 2659 GFTI 2662 **97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.96u 0.37s 00:00:02.33 Elapsed: 00:00:00.72 # Mc/sec: 28775.18 // Query: T236810_2 [L=7242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-13 47.7 0.5 1.3e-12 47.1 0.5 1.2 1 Transposase_22 L1 transposable element 0.003 17.0 0.0 0.0046 16.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.1 0.5 1.6e-16 1.3e-12 201 310 .. 4420 4529 .. 4418 4531 .. 0.86 Alignments for each domain: == domain 1 score: 47.1 bits; conditional E-value: 1.6e-16 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236810_2 4420 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 4508 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236810_2 4509 ETL*A-KREWHDIFKELKEKKL 4529 **775.69************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 5.6e-07 0.0046 1 100 [. 2490 2564 .. 2490 2579 .. 0.81 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 5.6e-07 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 +pK+g+ + R+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+ F+s++l+ +++kl+af+ T236810_2 2490 VPKPGAMDCRLaQ-----DLRLVNQATVT---------LHPVVPNLYTLLGL------------LPAEDSWFTCLDLKDIFFSIRLAPESQKLFAFQW 2561 5788888888855.....99999999999.........88888888888444............55788***************************98 PP T.. CS RVT_1 98 ptk 100 +++ T236810_2 2562 EDP 2564 866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.89u 0.36s 00:00:02.25 Elapsed: 00:00:00.73 # Mc/sec: 28381.00 // Query: T236810_3 [L=7241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-09 35.5 0.1 1.7e-08 34.6 0.1 1.3 1 RNase_H RNase H 0.0015 18.0 0.0 0.0032 17.0 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.1 2.1e-12 1.7e-08 39 138 .. 2954 3056 .. 2939 3056 .. 0.79 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 2.1e-12 CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT.HHHHHHHHHCH.CSSEEEEEE-SCCSSS....C CS RNase_H 39 eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn.kelaellkela.kkkkvqlkhvkgHaGd....p 128 + +++++a L+A+i a++ + +d++vniytDS Y++ +++ vh++ +++ +s +k+ k +e+ +ll e++ k++kv +++++gH+ + T236810_3 2954 QGTSAQKAKLIALIWAIElS--EDKTVNIYTDSWYAFLTLQ--VHGALYKEKGLlNSGGKDTKYqQEILQLL-EAV*KPQKVAVMYCRGHQQSftliA 3046 6799**************55..9**************9555..57765544444266666666645666666.5557689**********87779997 PP HHHHHHHHHH CS RNase_H 129 kgNemaDrlA 138 gN +aD+ A T236810_3 3047 LGNSRADSEA 3056 8******865 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 3.9e-07 0.0032 32 62 .. 1852 1882 .. 1850 1886 .. 0.90 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 3.9e-07 HHHHHHHHTTGGGGSSS--TT----HHHHHH CS Gag_MA 32 kklitlCsseWptlnvgWPreGtfdltviak 62 +kl+tlC+ +Wp+l+vgW eG d +++ k T236810_3 1852 GKLRTLCEIDWPALEVGWASEGNLDGSLVFK 1882 699********************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.00u 0.38s 00:00:02.38 Elapsed: 00:00:00.81 # Mc/sec: 25574.41 // Query: T376021_1 [L=993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-101 339.9 18.0 2.8e-101 338.9 18.0 1.4 1 Transposase_22 L1 transposable element 0.0046 17.4 4.8 0.02 15.3 4.8 2.1 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.0084 14.2 5.7 0.013 13.6 5.7 1.3 1 EzrA Septation ring formation regulator, EzrA 0.0093 16.1 2.0 0.028 14.5 2.0 1.7 1 KLRAQ Predicted coiled-coil domain-containing prote ------ inclusion threshold ------ 0.012 15.6 5.7 0.024 14.6 5.7 1.5 1 Tropomyosin_1 Tropomyosin like 0.014 15.4 1.8 0.014 15.4 1.8 2.4 2 ADIP Afadin- and alpha -actinin-Binding 0.097 12.6 0.6 0.25 11.3 0.6 1.7 1 DUF2730 Protein of unknown function (DUF2730) 0.11 12.6 3.2 0.31 11.2 3.2 1.8 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.11 12.8 1.9 0.31 11.4 1.9 1.7 1 Cep57_MT_bd Centrosome microtubule-binding domain of Cep5 0.26 11.2 1.1 14 5.6 0.1 2.5 2 DUF1515 Protein of unknown function (DUF1515) 4.6 6.3 6.5 0.21 10.7 1.1 1.4 2 TMPIT TMPIT-like protein 6.8 6.8 8.0 5.4 7.1 1.0 2.6 2 XhlA Haemolysin XhlA 8.7 6.7 6.1 44 4.4 0.1 2.7 2 FlaC_arch Flagella accessory protein C (FlaC) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 338.9 18.0 2.2e-104 2.8e-101 1 297 [. 337 598 .. 337 601 .. 0.94 Alignments for each domain: == domain 1 score: 338.9 bits; conditional E-value: 2.2e-104 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX........ CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskak.elealkekeentekqlkiikekqen 94 +Gkk+ rk++nsk + +s+P+ke sss at e+++ ++df+elr e++++++y+elke+i++++k + +k + +k l + n T376021_1 337 MGKKQ---SRKTENSKNQIASPPPKECSSSSAT--EQSWIENDFDELR-EGFRRSNYSELKEDIQTHGK*VKNLEKRL----DKWLT----RITN 417 79999...9************************..************8.8*****************98875555555....55555....2233 PP ..........XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS Transposase_22 95 tskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr 189 + k k+l+elkt v+el+ e+ slssr d+leervsa+ed+++e++re k+rekr+k++e+slq+i+d+vkr T376021_1 418 AEK----SFKDLMELKTMVRELRGECT------------------SLSSRFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEKSLQEIWDYVKR 490 333....3589***************9..................************************************************** PP TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEE CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirlt 284 Pnl liGv+es+ e+ +klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l a+rekGrvt kGkPirlt T376021_1 491 PNLCLIGVPESDGENATKLENTLQDIIQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLSAAREKGRVTHKGKPIRLT 585 *********************************************************************************************** PP E---HHHHHHHHH CS Transposase_22 285 adlsaetlkarre 297 adlsaetl+arr+ T376021_1 586 ADLSAETLQARRD 598 ************6 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 4.8 1.6e-05 0.02 5 91 .. 389 484 .. 386 490 .. 0.74 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.6e-05 Syntaxin-6_N 5 evkeeVqks...lnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpsk....fkidekelsrrrafveev 91 e ke++q +++le+ +++w +++ + ++s + el+ +eLr ++ s++ ++Lee v+++e + ++ k +ek ++r ++ ++e+ T376021_1 389 ELKEDIQTHgk*VKNLEKRLDKWlTRITNAEKSfKDLMELKTMVRELRGECTSLSSRFDQLEERVSAMEDQMNEmkreEKFREKRIKRNEKSLQEI 484 55666666655578999******6699999999989*****************************9998865440012455555555555555555 PP >> EzrA Septation ring formation regulator, EzrA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.6 5.7 1e-05 0.013 347 459 .. 406 519 .. 401 544 .. 0.85 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1e-05 HHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS-..S-TTTHHH CS EzrA 347 relekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeelleslkslrkdEkrAreqldeikkelkeikrkieksnLP..giPesyle 444 + l+k+l ++ + ++ ++ +e k+++ el+ e+ +l+++ +++ee++ +++++++++++Ek ++++++ +k l+ei ++++ nL g+Pes e T376021_1 406 KRLDKWLTRITNAEKSFKDLMELKTMV-RELRGECTSLSSRFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEKSLQEIWDYVKRPNLCliGVPESDGE 504 456777777777777777777777776.59**********************************************************975578999999 PP HSTTTSTTTHHHHHH CS EzrA 445 elkeasdeieelake 459 + ++ ++ ++++++e T376021_1 505 NATKLENTLQDIIQE 519 999999999999876 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 2.0 2.2e-05 0.028 34 86 .. 424 475 .. 411 487 .. 0.72 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 2.2e-05 KLRAQ 34 elkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkkses 86 +l e ++ +r + E sL+ r +qLe rv+++ ++++e +++ k ++k + T376021_1 424 DLMELKTMVRELRGECTSLSSRFDQLEERVSAMEDQMNEMKRE-EKFREKRIK 475 455667889999*************************987744.333322222 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 5.7 1.9e-05 0.024 6 78 .. 405 481 .. 401 490 .. 0.82 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.9e-05 Tropomyosin_1 6 kleaeealeraeeleekvkeleqenl...ekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.al 78 +++l+r ++e++ k+l + ++ e e +sL+ + +qlee v +e++++e+k++ + ek+ + ne +l T376021_1 405 EKRLDKWLTRITNAEKSFKDLMELKTmvrELRGECTSLSSRFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEkSL 481 555699*************975544311144579****************************999999999998555 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 1.8 1.1e-05 0.014 56 120 .. 426 490 .. 415 495 .. 0.88 2 ? 0.2 0.3 0.53 6.6e+02 92 130 .. 509 547 .. 500 563 .. 0.66 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 1.1e-05 ADIP 56 eslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqr 120 +l++ +r+l+ e ++l+s++++l++++++ e ++ +++e+ ek++k+ e+ l++ + ++r T376021_1 426 MELKTMVRELRGECTSLSSRFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEKSLQEIWDYVKR 490 5788999***********************************************99987766665 PP == domain 2 score: 0.2 bits; conditional E-value: 0.53 ADIP 92 lvqakerqlekklktleqklknekeelqrlknalqqikt 130 l + + ++ + +l ++++++ +e+qr+ + ++++ T376021_1 509 LENTLQDIIQENFPNLARQANIQIQEIQRMPQRYSSRRA 547 333334445666667777777777777777777666665 PP >> DUF2730 Protein of unknown function (DUF2730) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.6 0.0002 0.25 42 93 .. 401 453 .. 383 465 .. 0.85 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0002 DUF2730 42 veendkrlteletkvenLP.takdlekLkllladlrgelkaleaevrqlshqv 93 v++ +krl++ t++ n + kdl +Lk+ +++lrge l+ + +ql+ +v T376021_1 401 VKNLEKRLDKWLTRITNAEkSFKDLMELKTMVRELRGECTSLSSRFDQLEERV 453 56789999999999998862569**************************9876 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 3.2 0.00025 0.31 6 100 .. 370 463 .. 367 466 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00025 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldek.rrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +i +++++++e + R ++++e ++ k ++l+++l++ ++ ++ k+++ +++ k el+ e +l+ ++++le++++++e++++++ T376021_1 370 WIENDFDELREGFR-R-SNYSELKEDIQTHGK*VKNLEKRLDKWLTRITNAEKSFKDLMELKTMVRELRGECTSLSSRFDQLEERVSAMEDQMNEM 463 78888888888884.4.356777777888888899**********************************************************986 PP >> Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 1.9 0.00024 0.31 12 52 .. 427 467 .. 418 476 .. 0.93 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00024 Cep57_MT_bd 12 aLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkd 52 +L++ ++eL E + l+ ++ +l+++ a+++ +++ kR++ T376021_1 427 ELKTMVRELRGECTSLSSRFDQLEERVSAMEDQMNEMKREE 467 79************************************986 PP >> DUF1515 Protein of unknown function (DUF1515) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.1 0.034 43 14 70 .. 372 436 .. 364 442 .. 0.75 2 ? 5.6 0.1 0.011 14 37 62 .. 441 466 .. 434 527 .. 0.68 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.034 DUF1515 14 laevknlredlr...rsedrsdasr.....akmyrrmdelvervtalegsvsklkeditevkevt 70 ++ +lre +r se + d++ ++ +r+d+ + r+t+ e s l e t v+e+ T376021_1 372 ENDFDELREGFRrsnYSELKEDIQThgk*vKNLEKRLDKWLTRITNAEKSFKDLMELKTMVRELR 436 5688899999994444577888875333334799***************9998888878777765 PP == domain 2 score: 5.6 bits; conditional E-value: 0.011 DUF1515 37 kmyrrmdelvervtalegsvsklked 62 ++ r d+l erv+a+e ++ ++k + T376021_1 441 SLSSRFDQLEERVSAMEDQMNEMKRE 466 67789999999999999999887643 PP >> TMPIT TMPIT-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.4 6.3 7.9e+03 30 51 .. 333 350 .. 313 386 .. 0.46 2 ? 10.7 1.1 0.00017 0.21 3 78 .. 438 516 .. 430 533 .. 0.78 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 6.3 TMPIT 30 klqskcskeikkqkkrlkelks 51 k + kkq+++ ++ k+ T376021_1 333 KTTK----MGKKQSRKTENSKN 350 1111....11111111111111 PP == domain 2 score: 10.7 bits; conditional E-value: 0.00017 TMPIT 3 eweelekefkeleethkkykqkleelsklqskcskeikkqkkrlkelksslkklkksvk...eeeeeeveelkeelker 78 e+++l+++f++lee+ + ++ +++e+++ ++ k+ik+++k l+e+++ +k+ + + e++ e++++l+++l+++ T376021_1 438 ECTSLSSRFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEKSLQEIWDYVKRPNLCLIgvpESDGENATKLENTLQDI 516 5677888888888888888888888888888888888888888888888888877663345588888888888887764 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 1.0 0.096 1.2e+02 9 45 .. 390 426 .. 388 430 .. 0.79 2 ? 7.1 1.0 0.0043 5.4 7 44 .. 447 484 .. 441 489 .. 0.84 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.096 XhlA 9 ietkldnlee..rvdkleekaaeaeekiknleedlkkie 45 +++++ ++++ + le++ ++ +++i n+e+ k++ T376021_1 390 LKEDIQTHGK*vK--NLEKRLDKWLTRITNAEKSFKDLM 426 6677777777755..899999999999999999988875 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0043 XhlA 7 erietkldnleervdkleekaaeaeekiknleedlkki 44 ++e+++ +e+++++ ++ + e++ik +e+ l +i T376021_1 447 DQLEERVSAMEDQMNEMKREEKFREKRIKRNEKSLQEI 484 57899999999999999999999999999999999998 PP >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.1 0.035 44 2 28 .. 401 427 .. 401 436 .. 0.81 2 ? 2.8 2.4 0.12 1.4e+02 1 36 [. 445 480 .. 445 489 .. 0.78 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.035 FlaC_arch 2 idelEnklsklsteletvkkeneelsk 28 +++lE++l+k t++++++k++++l + T376021_1 401 VKNLEKRLDKWLTRITNAEKSFKDLME 427 689999999999999999999988755 PP == domain 2 score: 2.8 bits; conditional E-value: 0.12 FlaC_arch 1 ridelEnklsklsteletvkkeneelsksveeleen 36 r d+lE+++s ++ +++ +k+e + +k +++ e++ T376021_1 445 RFDQLEERVSAMEDQMNEMKREEKFREKRIKRNEKS 480 67999*************999987666666655555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1199 (0.0735312); expected 326.1 (0.02) Passed bias filter: 531 (0.0325647); expected 326.1 (0.02) Passed Vit filter: 113 (0.00692996); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 4117.11 // Query: T376021_2 [L=993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 5165.10 // Query: T376021_3 [L=992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 5791.72 // Query: T123310_1 [L=4821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.33s 00:00:01.75 Elapsed: 00:00:00.70 # Mc/sec: 19702.94 // Query: T123310_2 [L=4820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.72 # Mc/sec: 19151.67 // Query: T123310_3 [L=4820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.36s 00:00:01.84 Elapsed: 00:00:00.68 # Mc/sec: 20278.24 // Query: T041774_1 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.21s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 3664.30 // Query: T041774_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 32.1 0.0 2.6e-07 31.3 0.0 1.3 1 TGF_beta Transforming growth factor beta like domain Domain annotation for each model (and alignments): >> TGF_beta Transforming growth factor beta like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.0 1.6e-11 2.6e-07 22 98 .. 105 180 .. 95 184 .. 0.81 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 1.6e-11 TGF_beta 22 iaPkgyeanyCsGsC...lskeakaeksatnhavlqslvkelkpekkvpkpcCvPtklsslsllyldeennvvlkkledm 98 +P++y +nyC+G C + ++ ++a++h+ ++s+ ++ k + ++++p vP+kl+s++llyld+++ v l+++ + T041774_2 105 HHPSSYRINYCKGWCvfpVGHK----TNASHHTSFMSFFSHFKVNPDISNPAYVPNKLNSTRLLYLDSQKMVLLREYANR 180 69*************6443333....45688888888866666546899*****************99999999999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3587.96 // Query: T041774_3 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3514.73 // Query: T018212_1 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4606.52 // Query: T018212_2 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-13 49.0 0.0 1.1e-12 48.1 0.0 1.5 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.1 0.0 6.8e-17 1.1e-12 3 118 .. 162 273 .. 160 274 .. 0.94 Alignments for each domain: == domain 1 score: 48.1 bits; conditional E-value: 6.8e-17 rve 3 rpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafre.flaelgirvsftrpg 100 p +wq+D+ +++ + +g++y l + d +++l+l+++++ ++++ i++l++ a +g p+++ sD+g+ +t +++r+ ++++i+++f+ p+ T018212_2 162 MPLTRWQIDYAePLP--KLQGYTYALMAADIATGLLLIYPCRLA-NQQHSIRALQHLSALYGL--PLAIKSDRGTHFTGHQIRQ*A-QQMDIQWEFHVPY 255 6899*******7777..78889**********************.9999******99999999..***************999888.89*********** PP rve 101 rpqdnGkvErfnrtlkde 118 +pq G++E+ nr+lk++ T018212_2 256 NPQAAGMIEQYNRLLKNR 273 ****************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 4702.49 // Query: T018212_3 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 4600.68 // Query: T027823_1 [L=1579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 9218.88 // Query: T027823_2 [L=1579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 8857.35 // Query: T027823_3 [L=1578] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1578 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 8681.52 // Query: T361759_1 [L=5028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-14 54.5 2.0 2.9e-14 53.2 2.0 1.6 1 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.2 2.0 1.8e-18 2.9e-14 2 109 .. 602 701 .. 601 708 .. 0.89 Alignments for each domain: == domain 1 score: 53.2 bits; conditional E-value: 1.8e-18 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361759_1 602 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 694 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkr 109 +g+++ r T361759_1 695 GGFPRG--R 701 ***764..3 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 23200.41 // Query: T361759_2 [L=5028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.27s 00:00:01.51 Elapsed: 00:00:00.57 # Mc/sec: 24800.44 // Query: T361759_3 [L=5027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.30s 00:00:01.60 Elapsed: 00:00:00.61 # Mc/sec: 23576.05 // Query: T051312_1 [L=2323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.26s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 11458.12 // Query: T051312_2 [L=2322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 11453.18 // Query: T051312_3 [L=2322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.27s 00:00:01.34 Elapsed: 00:00:00.56 # Mc/sec: 11654.12 // Query: T358367_1 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3797.61 // Query: T358367_2 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3654.31 // Query: T358367_3 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-40 137.9 1.7 5.1e-40 137.5 1.7 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.5 1.7 3.1e-44 5.1e-40 2 139 .. 216 351 .. 215 358 .. 0.93 Alignments for each domain: == domain 1 score: 137.5 bits; conditional E-value: 3.1e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssks 93 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358367_3 216 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP---- 307 7****************************97765324444559*******************************.******************.... PP RBP_receptor 94 ekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358367_3 308 ---QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 351 ...9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3648.91 // Query: T222465_1 [L=3008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 15097.15 // Query: T222465_2 [L=3008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 15097.15 // Query: T222465_3 [L=3008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 14836.86 // Query: T227872_1 [L=2446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12958.50 // Query: T227872_2 [L=2446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12722.89 // Query: T227872_3 [L=2446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 12276.47 // Query: T021199_1 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 2585.97 // Query: T021199_2 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 2536.24 // Query: T021199_3 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.4 5.3 5.8 8.4 5.0 5.8 1.1 1 DUF4551 Protein of unknown function (DUF4551) Domain annotation for each model (and alignments): >> DUF4551 Protein of unknown function (DUF4551) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 5.8 0.00051 8.4 106 230 .. 191 311 .. 176 341 .. 0.74 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.00051 DUF4551 106 selllskdkkselfkvspskasekksrressgaakkssslnessldakekeektvskksqlslslselrklseeekeelesekalkslrsasrplPesl. 204 s + ls+ + s l++ s + + ++++ + ss+a++ +s ++s +a++ ++ + +s++++++s +ls + + +++ + + +sa+ p+P s T021199_3 191 SPECLSRSRSSVLPRSSAAPHPSSAAPHPSSAAPRLNSAAPHPSSAARRLNNAAPLPSSAVPHPSSAALHLSSTAPHPNRPSSLASPHPSARSPVPPSAh 290 556677777888888888888889999999999999999999999999999999999999***9999999999998888888777779999999996662 PP DUF4551 205 lsrapkppsspkeppssslskderds 230 +++++p ++s++ d+r++ T021199_3 291 PLSSARRP-----SRSKPWACDQRRT 311 22222222.....2222233334433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 2637.69 // Query: T096587_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 5144.56 // Query: T096587_2 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5328.30 // Query: T096587_3 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5425.17 // Query: T063227_1 [L=4325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.64 # Mc/sec: 19332.95 // Query: T063227_2 [L=4324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-15 57.1 0.0 2.3e-15 56.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0057 16.7 0.0 0.012 15.7 0.0 1.6 1 rve Integrase core domain 0.0091 15.4 0.0 0.015 14.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.6 0.0 4.2e-19 2.3e-15 1 221 [. 1599 1769 .. 1599 1770 .. 0.85 Alignments for each domain: == domain 1 score: 56.6 bits; conditional E-value: 4.2e-19 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGG.GGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellr.kltafkv 97 +pK+++++y p+ d++++n++++ l++ p+ + ++ ++ ++++lDlk+aF+s++l+++ + +++ T063227_2 1599 VPKPKTKDYWPV----QDLRLVNQATVT---------LHPAVPNPYTLLGL------------LPAEDSCFTFLDLKDAFFSIRLSREPEaVCFQWAD 1671 688888999996....699999999999.........88888888888444............45788*******************99944444444 PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 p + + +++y+++glpqG+++SP++f ++ + l+++ +r +++ll+Y+DD+l+ + + + +a+ ++l+++g T063227_2 1672 P-E--------------------SGVTTQYTWTGLPQGFKNSPTIFGEALPQDLQKFPTRDLDCVLLQYVDDLLLGHPMAVGCTKGTDALLRHLEDCG 1748 4.3....................3459*******************************999************************************* PP --BEGGG...-EEE.....ESSEEETTEE CS RVT_1 196 lkinpeK...tklvlfsgkseevkyLGvt 221 +k++++K + +++v+yLG+t T063227_2 1749 YKMSKKKa*iC--------RQQVHYLGFT 1769 ****9993322........2456777776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 2.2e-06 0.012 39 118 .. 3518 3595 .. 3516 3596 .. 0.82 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 2.2e-06 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgir.vsftrpgrpqdnGkvErfnrtlkde 118 a+++ +++++ ++ ll ++ +fg+ p + sD ++++++ ++f + l i+ + p++pq+ GkvE++ ++lk++ T063227_2 3518 AFPTGSKKTTTVISSLLSDIIPQFGP--PTSIESDSRPAFINQVSQAFFQALSIQ*N-LYIPYSPQSSGKVEQTTGLLKTH 3595 56677785666666666667777777..9************************9774.3579****************986 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 2.8e-06 0.015 138 181 .. 1267 1310 .. 1260 1310 .. 0.94 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 2.8e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++p f+ rl + r +t dp+ + + + + fi+qsa+di+ T063227_2 1267 KNPPQFMARLAATLRCFTALDPKMSKGRLILNIHFITQSAPDIK 1310 67999*************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.63 # Mc/sec: 19635.28 // Query: T063227_3 [L=4324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-17 61.8 0.0 1.4e-16 60.9 0.0 1.5 1 RNase_H RNase H 3.7e-07 30.2 0.6 1.1e-06 28.6 0.6 1.9 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.9 0.0 1.7e-20 1.4e-16 6 142 .. 2019 2159 .. 2018 2160 .. 0.76 Alignments for each domain: == domain 1 score: 60.9 bits; conditional E-value: 1.7e-20 EEEEEEEECT.TTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHT CS RNase_H 6 vYtDGsclgn.sgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvk 99 +Y+ Gs + n +ge++a + v+ ++ a+ +s+p + +++++aEL A+i aL+ + + ++vniytDS+Y++++++ + k++ +s +k++k T063227_3 2019 LYVAGSIFINpQGERCARYaVVTLDTvAEARSFP--QGTSAQKAELVALIRALElS--EAKNVNIYTDSQYAFSTLQVRGAL-YKEKSLLNSGGKDIK 2111 799*******877775555444444224455555..56****************55..99**************66553343.444444688888888 PP THHHHH...HHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 100 nkelae...llkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 l+e llk++ +++kv ++h++gH+ + gN +aD A++a T063227_3 2112 Y--LQEil*LLKAVWRPRKVAVMHCRGHQRAstlvGLGNSRADLEARKAT 2159 8..6662244799***************666568877*********9985 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.6 1.4e-10 1.1e-06 1 39 [] 2225 2263 .. 2225 2263 .. 0.98 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 1.4e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll ++++ ++++++++V++ C++C+ T063227_3 2225 HETTHLGQESLEKLLGWYFYISHLSALAKTVTQWCVTCR 2263 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.62u 0.40s 00:00:02.02 Elapsed: 00:00:00.82 # Mc/sec: 15085.65 // Query: T315991_1 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 2189.84 // Query: T315991_2 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 1877.42 // Query: T315991_3 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2225.09 // Query: T276138_1 [L=7112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.37s 00:00:02.27 Elapsed: 00:00:00.84 # Mc/sec: 24221.69 // Query: T276138_2 [L=7112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 72 (0.00441555); expected 326.1 (0.02) Passed bias filter: 26 (0.00159451); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.43s 00:00:02.49 Elapsed: 00:00:00.87 # Mc/sec: 23386.46 // Query: T276138_3 [L=7111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 46 (0.00282105); expected 326.1 (0.02) Passed bias filter: 13 (0.000797253); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.37s 00:00:02.21 Elapsed: 00:00:00.80 # Mc/sec: 25429.20 // Query: T381518_1 [L=4379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.34s 00:00:01.86 Elapsed: 00:00:00.75 # Mc/sec: 16703.43 // Query: T381518_2 [L=4378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.76 # Mc/sec: 16479.89 // Query: T381518_3 [L=4378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.77 # Mc/sec: 16265.86 // Query: T371837_1 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6498.17 // Query: T371837_2 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-37 126.5 0.4 1.1e-36 125.9 0.4 1.3 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 125.9 0.4 6.7e-41 1.1e-36 1 176 [] 931 1118 .. 931 1118 .. 0.94 Alignments for each domain: == domain 1 score: 125.9 bits; conditional E-value: 6.7e-41 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldvey..ksnrkawltssifeeWLekvfdkrve.....kaekrkvlLllddsrshe.t 90 k+rlt ll+anaag+ kLkp++i+++k+ +a kn kl+ + k+++k w+t+++f++W+++++++++e k+ k+lLl+d++++ + T371837_2 931 KDRLTFLLGANAAGDFKLKPMLIYHSKTVKALKN---YAKLTLPIl*KWKNKVWMTAHLFTAWFTEYLKPTLEtycseKKIPFKILLLIDNAPGPPrD 1025 689*******************************...555555555667899*****************************************99945 PP DDE_1 91 velsecelqniklvflPasstsllqPldqgvvselKarYrrqllkallalqnrlsk..........eqkkltllnalkfikkAwnavsketIksaw 176 ++++i++vf+Pa++ts+l P+dqg+ ++K++Y ++++ +++ + nr+s+ + + +l+a+k+i ++w++v+ +t++++w T371837_2 1026 LRE---MYREINAVFMPANTTSILYPMDQGITLTFKSYYLKNTFCKAITAINRDSSdgsgqnklktYWRGFAILDAIKNIHDSWEEVKISTLTEVW 1118 555...9************************************************9*********99**************************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 5848.35 // Query: T371837_3 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.9 0.1 0.047 13.6 0.1 1.7 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 2.9e-06 0.047 11 36 .. 806 832 .. 804 847 .. 0.79 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.9e-06 HHHHHC.CT---SCHHHHHHHHHHH.H CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela.s 36 Wi++++ +++p++++li++k + l+ s T371837_3 806 WIEDQTSHNIPLSQSLIQRKTLTLFhS 832 *********************998641 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 6016.16 // Query: T369010_1 [L=976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.73 # Mc/sec: 3824.89 // Query: T369010_2 [L=976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 4577.33 // Query: T369010_3 [L=975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.73 # Mc/sec: 3820.97 // Query: T018736_1 [L=2797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-61 206.3 57.3 5.2e-36 124.2 14.1 3.3 3 CCDC144C CCDC144C protein coiled-coil region 5.2e-09 36.3 0.1 5.2e-09 36.3 0.1 4.3 4 DUF3496 Domain of unknown function (DUF3496) 0.0088 15.9 1.1 0.0088 15.9 1.1 2.9 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 15.7 6.8e-32 3.7e-28 3 96 .. 1786 1879 .. 1786 1880 .. 0.98 2 ! 124.2 14.1 9.6e-40 5.2e-36 184 304 .. 1964 2075 .. 1953 2076 .. 0.96 3 ? -4.1 11.6 1.2 6.3e+03 129 204 .. 2131 2209 .. 2100 2222 .. 0.49 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 6.8e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018736_1 1786 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1879 599*****************************************************************************************95 PP == domain 2 score: 124.2 bits; conditional E-value: 9.6e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018736_1 1964 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2052 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018736_1 2053 KLMNECDHLKESLFQYEREKAER 2075 **********************9 PP == domain 3 score: -4.1 bits; conditional E-value: 1.2 CCDC144C 129 lrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqn 204 + ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ + T018736_1 2131 MAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQ 2209 4444444444444444444444443222234444444444444444433333334444444444444444444443333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 5.9 3 1.6e+04 29 94 .. 1805 1869 .. 1790 1875 .. 0.78 2 ? 1.8 0.5 0.05 2.7e+02 44 108 .. 2051 2119 .. 2037 2120 .. 0.75 3 ? -1.8 9.8 0.66 3.6e+03 8 65 .. 2148 2203 .. 2144 2221 .. 0.78 4 ! 36.3 0.1 9.6e-13 5.2e-09 64 107 .. 2231 2273 .. 2224 2275 .. 0.95 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018736_1 1805 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 1869 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 1.8 bits; conditional E-value: 0.05 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018736_1 2051 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2119 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -1.8 bits; conditional E-value: 0.66 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018736_1 2148 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2203 666789***********9..89******999984466666665.445567777777776 PP == domain 4 score: 36.3 bits; conditional E-value: 9.6e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018736_1 2231 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 2273 89*****************************.**********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 1.1 1.6e-06 0.0088 24 94 .. 1966 2035 .. 1962 2036 .. 0.95 2 ? -2.5 0.2 0.81 4.4e+03 59 80 .. 2077 2098 .. 2047 2106 .. 0.52 3 ? -0.6 5.7 0.21 1.1e+03 13 79 .. 2153 2218 .. 2118 2222 .. 0.78 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.6e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018736_1 1966 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2035 68999********************************************************76.9999986 PP == domain 2 score: -2.5 bits; conditional E-value: 0.81 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018736_1 2077 VVVRQLQQEAADSLKKLTMLES 2098 3456666666666666655554 PP == domain 3 score: -0.6 bits; conditional E-value: 0.21 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018736_1 2153 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2218 3333.45678888888888888888888888888888888888888888999999999999988885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 948 (0.0581381); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.58u 0.41s 00:00:01.99 Elapsed: 00:00:00.77 # Mc/sec: 10391.87 // Query: T018736_2 [L=2797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-17 61.1 9.6 8.4e-17 61.1 9.6 1.5 2 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 2.4 0.59 9.7e+03 28 107 .. 1347 1375 .. 1334 1384 .. 0.40 2 ! 61.1 9.6 5.1e-21 8.4e-17 96 185 .. 1878 1965 .. 1865 1967 .. 0.93 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 0.59 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018736_2 1347 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1375 22222221...................................................133333444444444444433 PP == domain 2 score: 61.1 bits; conditional E-value: 5.1e-21 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018736_2 1878 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 1965 689**********************9554.57..89*****************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.78 # Mc/sec: 10258.64 // Query: T018736_3 [L=2797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.75 # Mc/sec: 10668.99 // Query: T189216_1 [L=638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-44 150.6 1.4 5.9e-44 150.1 1.4 1.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.1 1.4 3.6e-48 5.9e-44 1 210 [. 301 529 .. 301 548 .. 0.92 Alignments for each domain: == domain 1 score: 150.1 bits; conditional E-value: 3.6e-48 EE-TT......S-EEE......-THHHHCTB...--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkli...akrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleel 88 ipK+g ++++Rpisl+++d k+lnk++ ++ ++++kl+ ++q gf pg + + ++ ++++ +++ k k+++++++D +kaFd+++ ++ T189216_1 301 IPKPGrdttkKENFRPISLMNIDAKILNKILgn*IQ---QHIKKLIYHDQLGFIPGMQGWFNTcksiNVIQYINRTKDKNHMIISVDAEKAFDKIQQPFM 397 899999999999******************755534...678888************999999*9988888887888888******************** PP GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HH CS RVT_1 89 lrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.ke 178 l++l++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r + ++v+l+++aDD++++ ++ T189216_1 398 LKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAYPLKTGTRQGCPLSPLLFNIVLEVLARAIRLEKeikriqlgkEEVKLSLFADDMIVYLENpIV 497 *********************************99********************************9999**************************667 PP HHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 179 elqelleaveewlkesglkinpeKtklvlfsg 210 ++q+ll+ ++++ k sg+kin +K++++l+++ T189216_1 498 SAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 529 7***************************8733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 2765.47 // Query: T189216_2 [L=638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3202.12 // Query: T189216_3 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 3254.19 // Query: T212823_1 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.35s 00:00:01.85 Elapsed: 00:00:00.95 # Mc/sec: 12226.28 // Query: T212823_2 [L=4059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:00.74 # Mc/sec: 15692.04 // Query: T212823_3 [L=4059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.32s 00:00:01.72 Elapsed: 00:00:00.67 # Mc/sec: 17331.51 // Query: T039749_1 [L=2768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.5 5.8 21.4 9 4.8 21.4 1.5 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 21.4 0.00055 9 231 317 .. 698 788 .. 668 849 .. 0.44 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.00055 Presenilin 231 kaevakaeeeeeaekkeeeaseeskeeeseeesseksassse............seeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeees 317 +++++ ++e+++++kke+++++++k+ ++++e+ ek + +++ee+e+ ++ ++e ++++e+k++ee+++ +++e+e++++ T039749_1 698 RKKKEREKERKKERKKERKKERKRKRGRERKEEREKG----RkikkerkrrrerKRKEEREKGRKIKKERKRRRERKRKEEREKG----RKKEKERKKK 788 1111111111111111111111122222222222222....02222222222111111112222222222222222221111111....1111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1632 (0.100086); expected 326.1 (0.02) Passed bias filter: 524 (0.0321354); expected 326.1 (0.02) Passed Vit filter: 302 (0.0185208); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.61u 0.51s 00:00:04.12 Elapsed: 00:00:01.01 # Mc/sec: 7840.37 // Query: T039749_2 [L=2768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 984 (0.0603459); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.36s 00:00:02.08 Elapsed: 00:00:00.78 # Mc/sec: 10152.28 // Query: T039749_3 [L=2767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1731 (0.106157); expected 326.1 (0.02) Passed bias filter: 527 (0.0323194); expected 326.1 (0.02) Passed Vit filter: 393 (0.0241016); expected 16.3 (0.001) Passed Fwd filter: 98 (0.00601006); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.30u 0.51s 00:00:04.80 Elapsed: 00:00:01.15 # Mc/sec: 6824.07 // Query: T275904_1 [L=2293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1348 (0.082669); expected 326.1 (0.02) Passed bias filter: 536 (0.0328713); expected 326.1 (0.02) Passed Vit filter: 384 (0.0235496); expected 16.3 (0.001) Passed Fwd filter: 107 (0.006562); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.71u 0.59s 00:00:06.30 Elapsed: 00:00:01.53 # Mc/sec: 4287.51 // Query: T275904_2 [L=2292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.0 0.14 12.4 0.0 2.2 1 DUF912 Nucleopolyhedrovirus protein of unknown function 0.032 13.5 0.0 0.032 13.5 0.0 1.8 2 DUF1510 Protein of unknown function (DUF1510) 0.047 13.5 0.2 0.1 12.4 0.2 1.5 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.25 11.1 5.6 0.51 10.1 5.6 1.4 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 3.3e-05 0.14 39 87 .. 1295 1341 .. 1273 1357 .. 0.45 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 3.3e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275904_2 1295 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 1341 111222222222222223344444444444444444444433222..11 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 1.7 1.5 6.3e+03 109 109 .. 1143 1143 .. 1069 1229 .. 0.56 2 ? 13.5 0.0 8e-06 0.032 5 58 .. 1312 1365 .. 1307 1371 .. 0.65 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 1.5 DUF1510 109 n 109 + T275904_2 1143 H 1143 0 PP == domain 2 score: 13.5 bits; conditional E-value: 8e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275904_2 1312 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 1365 334444555566667777777777788888888888887777777766666554 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.2 2.5e-05 0.1 86 139 .. 1293 1344 .. 1268 1352 .. 0.52 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.5e-05 LRRC37AB_C 86 nesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275904_2 1293 RHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 1344 333333344444455556666667777777777666666555555554444..4 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 5.6 0.00013 0.51 26 58 .. 1325 1357 .. 1317 1365 .. 0.68 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00013 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssna 58 +++ti+++++iii+ ++++ s s+ s sss++ T275904_2 1325 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSS 1357 678999999999888888876554444333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1170 (0.0717527); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 145 (0.00889243); expected 16.3 (0.001) Passed Fwd filter: 46 (0.00282105); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.77u 0.51s 00:00:03.28 Elapsed: 00:00:00.81 # Mc/sec: 8095.09 // Query: T275904_3 [L=2292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.1 12.4 5.3 6.5 12.4 1.1 1 SR-25 Nuclear RNA-splicing-associated protein 8.7 5.5 18.0 14 4.9 18.0 1.1 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 12.4 0.00065 5.3 65 98 .. 1323 1355 .. 1320 1362 .. 0.31 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00065 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275904_3 1323 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 1355 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 18.0 0.0017 14 177 204 .. 1334 1361 .. 1318 1365 .. 0.52 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0017 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275904_3 1334 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 1361 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1451 (0.0889856); expected 326.1 (0.02) Passed bias filter: 559 (0.0342819); expected 326.1 (0.02) Passed Vit filter: 421 (0.0258187); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.94u 0.57s 00:00:04.51 Elapsed: 00:00:01.20 # Mc/sec: 5464.19 // Query: T293597_1 [L=268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.64 # Mc/sec: 1197.97 // Query: T293597_2 [L=267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.52 # Mc/sec: 1468.93 // Query: T293597_3 [L=267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.53 # Mc/sec: 1441.21 // Query: T268278_1 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-05 22.1 1.8 0.00016 21.1 1.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 1.8 9.7e-09 0.00016 2 14 .. 1500 1512 .. 1500 1512 .. 0.98 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 9.7e-09 DUF1725 2 FagKWMELEnIIL 14 Fag+WMELE IIL T268278_1 1500 FAGTWMELEAIIL 1512 9***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.79 # Mc/sec: 9643.53 // Query: T268278_2 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 11543.02 // Query: T268278_3 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.83 # Mc/sec: 9178.78 // Query: T357974_1 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1323 (0.0811358); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.76 # Mc/sec: 3824.48 // Query: T357974_2 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1384 (0.0848767); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 3981.65 // Query: T357974_3 [L=1015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1691 (0.103704); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.59 # Mc/sec: 4921.60 // Query: T037861_1 [L=101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.096 12.5 1.2 0.14 11.9 1.2 1.2 1 OrfB_Zn_ribbon Putative transposase DNA-binding domain Domain annotation for each model (and alignments): >> OrfB_Zn_ribbon Putative transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 1.2 8.7e-06 0.14 19 55 .. 21 56 .. 13 58 .. 0.85 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 8.7e-06 OrfB_Zn_ribbon 19 veevnpay.TSktCseCgsknkealsgrtfkCpnCgfe 55 +e+ + ++ + +tC + g ++ + s+ f+C+ Cg + T037861_1 21 LELLDSSNsSASTCQVVGTTHVP--SHSAFVCDPCGNH 56 5677788856789**********..***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 293 (0.0179688); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.54 # Mc/sec: 535.08 // Query: T037861_2 [L=100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 501.90 // Query: T037861_3 [L=100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 560.95 // Query: T159803_1 [L=4001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0064 15.9 0.0 0.011 15.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.083 13.0 0.0 0.16 12.2 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 1.3e-06 0.011 138 181 .. 1742 1785 .. 1735 1785 .. 0.94 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.3e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa +i+ T159803_1 1742 KNPAPFMARLAATLRRFTALDPKRSKGRLILNIHFITQSALNIK 1785 689*************************************9996 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 1.9e-05 0.16 77 100 .. 2019 2042 .. 2017 2043 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.9e-05 EEESTTSSSEEE-HHHHCCCT-EE CS RVP 77 plilpelpvnllGrdlLqklgvrL 100 +l++p++pv+llGrd L+kl + L T159803_1 2019 LLVIPTCPVPLLGRDTLTKLSASL 2042 6899****************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 20081.02 // Query: T159803_2 [L=4001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.59 # Mc/sec: 19400.31 // Query: T159803_3 [L=4000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-05 24.6 3.9 4.5e-05 23.2 3.9 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.12 11.7 0.0 0.2 11.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 3.9 5.5e-09 4.5e-05 2 18 .] 1861 1877 .. 1860 1877 .. 0.94 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 5.5e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T159803_3 1861 ACYKCQKSGHQAKECPQ 1877 7***************7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 2.5e-05 0.2 69 100 .. 2184 2215 .. 2170 2242 .. 0.79 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 2.5e-05 -EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 69 klllklDlkkaFdsvpleellrkltafkvptk 100 +++ lDlk aF+++pl+ +++l+af+ ++ T159803_3 2184 IHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP 2215 68899**********************98766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 18456.97 // Query: T365967_1 [L=3016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 15407.61 // Query: T365967_2 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 14871.38 // Query: T365967_3 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.59 # Mc/sec: 14619.33 // Query: T126881_1 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2574.75 // Query: T126881_2 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 91 (0.00558077); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 2470.22 // Query: T126881_3 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2470.22 // Query: T258044_1 [L=2336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 11724.38 // Query: T258044_2 [L=2336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.85 8.9 9.9 67 2.8 0.0 6.1 5 zf-TFIIB Transcription factor zinc-finger Domain annotation for each model (and alignments): >> zf-TFIIB Transcription factor zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.0041 67 24 35 .. 2042 2053 .. 2041 2056 .. 0.87 2 ? 1.3 0.1 0.012 2e+02 24 31 .. 2087 2094 .. 2086 2097 .. 0.80 3 ? 1.3 0.1 0.012 2e+02 24 31 .. 2147 2154 .. 2146 2157 .. 0.80 4 ? 0.8 0.1 0.017 2.7e+02 25 35 .. 2223 2233 .. 2221 2234 .. 0.87 5 ? 2.6 0.1 0.0049 80 24 35 .. 2267 2278 .. 2266 2279 .. 0.87 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.0041 zf-TFIIB 24 qCrGvWldrgel 35 +C+G Wl el T258044_2 2042 RCGGTWLLVSEL 2053 8******98887 PP == domain 2 score: 1.3 bits; conditional E-value: 0.012 zf-TFIIB 24 qCrGvWld 31 +C+G Wl T258044_2 2087 RCGGTWLL 2094 8*****96 PP == domain 3 score: 1.3 bits; conditional E-value: 0.012 zf-TFIIB 24 qCrGvWld 31 +C+G Wl T258044_2 2147 RCGGTWLL 2154 8*****96 PP == domain 4 score: 0.8 bits; conditional E-value: 0.017 zf-TFIIB 25 CrGvWldrgel 35 C+G Wl el T258044_2 2223 CGGTWLLVSEL 2233 ******98887 PP == domain 5 score: 2.6 bits; conditional E-value: 0.0049 zf-TFIIB 24 qCrGvWldrgel 35 +C+G Wl el T258044_2 2267 RCGGTWLLVSEL 2278 8******98887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 12150.73 // Query: T258044_3 [L=2336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 11724.38 // Query: T125964_1 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 6791.82 // Query: T125964_2 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 6668.33 // Query: T125964_3 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 6791.82 // Query: T210858_1 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 10022.94 // Query: T210858_2 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 10387.41 // Query: T210858_3 [L=1996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 10196.82 // Query: T124875_1 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.7e-25 87.5 0.1 1.7e-24 86.7 0.1 1.3 1 Trypsin Trypsin Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.7 0.1 1e-28 1.7e-24 115 221 .] 206 326 .. 193 326 .. 0.87 Alignments for each domain: == domain 1 score: 86.7 bits; conditional E-value: 1e-28 TTSTTTEEEEEESSB.SSTSS...BSSBEEEEEEEEEEHHHHHHHTTTT.........STTTEEEEESTTSSSBCTTTTTTSEEEETTT...EEEEEEEE CS Trypsin 115 slpvgttclvsGwgr.tkekg...ksdtlqevevpvvsretcksaykgk.........vtenmlcagakeggkdacqGDSGGPlvcsdg...elvGivsw 198 ++p++ + +G g+ ++ + ++++lq++ v+v++++ c++ y++ + ++mlcag+ +g+d+c+GDSGGPlvc+ + lvG+vsw T124875_1 206 HRPPQLCHCGAGCGCgPAPAEslpPPYRLQQASVQVLENAVCEQPYRNAsghtgdrqlILDDMLCAGS--EGRDSCYGDSGGPLVCRLRgswRLVGVVSW 303 4456656667777776333335689********************7776788999***99********..8***************************** PP ESSSSBTTCEEEEEEGGGGHHHH CS Trypsin 199 gkgcakgnrpgvytkvssyldwi 221 g+gc+ + pgvyt+v+ y+ wi T124875_1 304 GYGCTLRDFPGVYTHVQIYVLWI 326 **********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 5494.95 // Query: T124875_2 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 5489.55 // Query: T124875_3 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 5387.90 // Query: T138211_1 [L=12140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.51u 0.46s 00:00:02.97 Elapsed: 00:00:00.76 # Mc/sec: 45698.00 // Query: T138211_2 [L=12140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.43s 00:00:02.80 Elapsed: 00:00:00.73 # Mc/sec: 47575.99 // Query: T138211_3 [L=12139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.50s 00:00:03.33 Elapsed: 00:00:00.82 # Mc/sec: 42350.75 // Query: T316901_1 [L=1402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 6915.32 // Query: T316901_2 [L=1402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7427.56 // Query: T316901_3 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.50 # Mc/sec: 8016.05 // Query: T368497_1 [L=1079] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1079 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5612.43 // Query: T368497_2 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 5410.48 // Query: T368497_3 [L=1078] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1078 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 5930.72 // Query: T228182_1 [L=2318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 11634.04 // Query: T228182_2 [L=2318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 11634.04 // Query: T228182_3 [L=2317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.57 # Mc/sec: 11428.52 // Query: T133989_1 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 16099.57 // Query: T133989_2 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16382.02 // Query: T133989_3 [L=3263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.41s 00:00:01.53 Elapsed: 00:00:00.76 # Mc/sec: 12282.75 // Query: T229041_1 [L=2068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 10200.34 // Query: T229041_2 [L=2068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 19.4 0.2 0.015 15.8 0.1 2.7 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.1 9.2e-07 0.015 10 42 .] 1466 1499 .. 1463 1499 .. 0.87 2 ? -0.0 0.0 0.082 1.3e+03 13 22 .. 1596 1605 .. 1592 1616 .. 0.80 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 9.2e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229041_2 1466 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1499 579********8544.6***************766 PP == domain 2 score: -0.0 bits; conditional E-value: 0.082 GPS 13 gsWseeGClt 22 +Ws +GC++ T229041_2 1596 QRWSVRGCRS 1605 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 8700.29 // Query: T229041_3 [L=2068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00055 19.3 0.0 0.00093 18.5 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 5.7e-08 0.00093 112 157 .. 64 108 .. 51 161 .. 0.89 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 5.7e-08 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalkes 157 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k++ T229041_3 64 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPP 108 89********************.9********************94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.61 # Mc/sec: 9698.68 // Query: T138230_1 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.31 10.8 1.2 14 5.5 1.2 3.0 1 Ubiquitin_3 Ubiquitin-like domain Domain annotation for each model (and alignments): >> Ubiquitin_3 Ubiquitin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 1.2 0.00088 14 73 87 .. 51 65 .. 2 83 .. 0.75 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.00088 EEEEEEE--TTS--T CS Ubiquitin_3 73 qvllleekdemgnWp 87 qvl++ e +mg+W+ T138230_1 51 QVLVMMEIADMGAWA 65 666666666666663 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.53 # Mc/sec: 458.81 // Query: T138230_2 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 16 (0.000981234); expected 326.1 (0.02) Passed bias filter: 6 (0.000367963); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.55 # Mc/sec: 442.13 // Query: T138230_3 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.56 # Mc/sec: 426.62 // Query: T316254_1 [L=1569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 6412.35 // Query: T316254_2 [L=1569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 7239.75 // Query: T316254_3 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 6501.13 // Query: T138736_1 [L=785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.64 # Mc/sec: 3508.99 // Query: T138736_2 [L=785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 3508.99 // Query: T138736_3 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.55 # Mc/sec: 4077.98 // Query: T165558_1 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 3224.49 // Query: T165558_2 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3337.64 // Query: T165558_3 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 3019.76 // Query: T351156_1 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.048 13.4 0.1 0.11 12.2 0.1 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 6.8e-06 0.11 15 43 .. 1821 1853 .. 1818 1860 .. 0.79 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 6.8e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351156_1 1821 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1853 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.57 # Mc/sec: 13505.09 // Query: T351156_2 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-20 73.2 7.1 1.8e-20 72.4 4.2 2.4 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.078 13.1 0.0 0.19 11.8 0.0 1.6 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.056 4.5e+02 25 38 .. 1631 1644 .. 1627 1646 .. 0.80 2 ! 72.4 4.2 2.2e-24 1.8e-20 9 79 .. 1816 1885 .. 1796 1886 .. 0.86 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.056 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351156_2 1631 EKLSKNAMLTIVWS 1644 45569********8 PP == domain 2 score: 72.4 bits; conditional E-value: 2.2e-24 Transposase_1 9 aqWldkgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 + g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351156_2 1816 S-----GWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1885 4.....556666666666666666*************************************************98 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 2.3e-05 0.19 5 23 .. 2663 2681 .. 2660 2687 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 2.3e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351156_2 2663 NLVCQVFPREYLANHNCGR 2681 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.82 # Mc/sec: 9552.38 // Query: T351156_3 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 10443.94 // Query: T125962_1 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.75 # Mc/sec: 4222.59 // Query: T125962_2 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.73 # Mc/sec: 4334.35 // Query: T125962_3 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 5273.46 // Query: T077413_1 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 6133.96 // Query: T077413_2 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 6045.06 // Query: T077413_3 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 6512.86 // Query: T378693_1 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 3315.96 // Query: T378693_2 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 3583.07 // Query: T378693_3 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.68 # Mc/sec: 3214.23 // Query: T239847_1 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 4582.73 // Query: T239847_2 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 3736.68 // Query: T239847_3 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 3515.92 // Query: T358360_1 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.67 # Mc/sec: 5538.05 // Query: T358360_2 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-40 136.6 1.8 1.3e-39 136.2 1.8 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.2 1.8 8.1e-44 1.3e-39 2 139 .. 292 427 .. 291 435 .. 0.93 Alignments for each domain: == domain 1 score: 136.2 bits; conditional E-value: 8.1e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssks 93 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358360_2 292 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP---- 383 7****************************97765324444559*******************************.******************.... PP RBP_receptor 94 ekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358360_2 384 ---QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 427 ...9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.73 # Mc/sec: 5082.87 // Query: T358360_3 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 5452.41 // Query: T222039_1 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.68 # Mc/sec: 12659.17 // Query: T222039_2 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.69 # Mc/sec: 12475.71 // Query: T222039_3 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.30s 00:00:01.62 Elapsed: 00:00:00.76 # Mc/sec: 11326.63 // Query: T233456_1 [L=86] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.01 15.4 0.3 0.015 14.8 0.3 1.2 1 ICAM_N Intercellular adhesion molecule (ICAM), N-terminal Domain annotation for each model (and alignments): >> ICAM_N Intercellular adhesion molecule (ICAM), N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.3 9.1e-07 0.015 8 32 .. 39 63 .. 33 71 .. 0.86 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 9.1e-07 EESSEEEEETTEEEEEEEEESSSS- CS ICAM_N 8 vepkkaileaggslkvnCstsCkqp 32 ++++ +l+a+gs v+C + C++p T233456_1 39 CSSQQLMLSATGSCGVTCGSRCAAP 63 678999****************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (86 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.64 # Mc/sec: 384.42 // Query: T233456_2 [L=86] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (86 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 84 (0.00515148); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.50 # Mc/sec: 492.06 // Query: T233456_3 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.48 # Mc/sec: 506.61 // Query: T138205_1 [L=9106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.73u 0.40s 00:00:03.13 Elapsed: 00:00:01.14 # Mc/sec: 22652.80 // Query: T138205_2 [L=9105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.26u 0.53s 00:00:03.79 Elapsed: 00:00:00.97 # Mc/sec: 26853.46 // Query: T138205_3 [L=9105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.63u 0.42s 00:00:03.05 Elapsed: 00:00:00.95 # Mc/sec: 27418.80 // Query: T006607_1 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 2639.35 // Query: T006607_2 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.61 # Mc/sec: 2677.92 // Query: T006607_3 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.59 # Mc/sec: 2768.70 // Query: T051369_1 [L=3379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.72 # Mc/sec: 13426.03 // Query: T051369_2 [L=3378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.35s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 12389.59 // Query: T051369_3 [L=3378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.28s 00:00:01.59 Elapsed: 00:00:00.97 # Mc/sec: 9962.77 // Query: T017738_1 [L=263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1343.57 // Query: T017738_2 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.68 # Mc/sec: 1102.26 // Query: T017738_3 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 1135.66 // Query: T053074_1 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 7673.29 // Query: T053074_2 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 8482.79 // Query: T053074_3 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 8356.19 // Query: T132849_1 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.5 8.6 16.4 4.7 7.7 16.4 1.4 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 16.4 0.00029 4.7 62 95 .. 943 973 .. 934 976 .. 0.57 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00029 PRP38_assoc 62 rrsrstprdrdrardRdrrrskrsreRdrsrsrd 95 + +r+ +r+r rdRdr ++ r+reR+r+r+r+ T132849_1 943 KGKRE--NNRERKRDRDRGGE-RERERERERERE 973 22222..55666666666655.777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 7650.41 // Query: T132849_2 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 8321.50 // Query: T132849_3 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.57 # Mc/sec: 8178.03 // Query: T193341_1 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 2519.54 // Query: T193341_2 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2930.89 // Query: T193341_3 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.31s 00:00:00.76 Elapsed: 00:00:00.47 # Mc/sec: 3055.61 // Query: T156490_1 [L=3308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.53 # Mc/sec: 17855.90 // Query: T156490_2 [L=3308] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3308 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16899.33 // Query: T156490_3 [L=3307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16597.83 // Query: T316900_1 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 8979.83 // Query: T316900_2 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9149.26 // Query: T316900_3 [L=1694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 9319.70 // Query: T188413_1 [L=4250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 999 (0.0612658); expected 326.1 (0.02) Passed bias filter: 420 (0.0257574); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.41s 00:00:01.94 Elapsed: 00:00:00.62 # Mc/sec: 19610.53 // Query: T188413_2 [L=4250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 642 (0.039372); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.41s 00:00:01.68 Elapsed: 00:00:00.61 # Mc/sec: 19932.01 // Query: T188413_3 [L=4249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5 7.1 5.6 8.3 6.4 5.6 1.2 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 5.6 0.00051 8.3 66 103 .. 412 449 .. 409 470 .. 0.62 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00051 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188413_3 412 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 449 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1019 (0.0624923); expected 326.1 (0.02) Passed bias filter: 567 (0.0347725); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.70u 0.44s 00:00:02.14 Elapsed: 00:00:00.64 # Mc/sec: 18993.23 // Query: T053875_1 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6707.06 // Query: T053875_2 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-38 130.5 0.0 8.3e-38 129.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 2.7e-16 58.7 23.8 3.1e-06 26.9 3.8 3.8 3 zf-CCHC Zinc knuckle 1.7e-06 27.6 0.2 4e-06 26.4 0.2 1.6 1 Gag_MA Matrix protein (MA), p15 5.7e-05 22.9 14.2 0.045 13.6 0.8 3.9 3 zf-CCHC_3 Zinc knuckle 0.00046 19.8 30.8 0.0033 17.1 3.6 4.9 4 zf-CCHC_2 Zinc knuckle 0.0042 16.6 11.7 0.44 10.2 1.2 3.6 3 zf-CCHC_4 Zinc knuckle ------ inclusion threshold ------ 0.097 12.3 31.2 0.025 14.1 2.2 4.1 4 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.9 0.0 3.6e-41 8.3e-38 3 210 .. 318 525 .. 316 526 .. 0.94 Alignments for each domain: == domain 1 score: 129.9 bits; conditional E-value: 3.6e-41 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeafpltrpdwdyet.aeg 101 pfs dl + + sfs +p+ +t+ + ++ tw d +l l+ eer+r+l+ ar++ + ++p +a p t p+wdy+ +g T053875_2 318 VPFSLVDLSKIERHLGSFSTNPTLFTKEFHYLCQVYDLTWHDIHIILTSTLSPEERERILIAARQHANQLHLTDPNVPVG-TQAVPSTDPEWDYQVgQAG 416 69**************************************************************9987766665566544.6799*********973579 PP Gag_p30 102 reslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklq.rleglqeatlkdlvk 200 r + + q llag++ a+++ n+ k+ke+vq ++e+pa+fl+rl++a +yt dp +p+ ++ +a fi qsa dirkkl+ eglq+ ++dlvk T053875_2 417 RRRRDIMVQCLLAGMQVASNKSVNFDKLKEIVQYPDENPAVFLNRLTDALVHYTRLDPASPAGATILATYFISQSARDIRKKLK*AEEGLQT-PIQDLVK 515 ******************************************************************************************97.69***** PP Gag_p30 201 eaekvynkre 210 a kv+n re T053875_2 516 LAFKVFNSRE 525 *******998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 2.4 1.2e-08 2.8e-05 2 18 .] 574 590 .. 573 590 .. 0.94 2 ! 26.9 3.8 1.3e-09 3.1e-06 3 18 .] 601 616 .. 600 616 .. 0.95 3 ! 19.0 2.5 4.3e-07 0.00099 2 17 .. 623 638 .. 622 638 .. 0.94 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 1.2e-08 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C++CG+ GH+a+ Cp+ T053875_2 574 ACFKCGNSGHWASRCPS 590 7***************6 PP == domain 2 score: 26.9 bits; conditional E-value: 1.3e-09 TSSSSSSSSTTTTSTS CS zf-CCHC 3 CynCGepGHiardCpk 18 C++CG+pGH+a++Cp+ T053875_2 601 CFKCGNPGHWAKQCPN 616 ***************6 PP == domain 3 score: 19.0 bits; conditional E-value: 4.3e-07 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 +C nC ++GH+ +dCp T053875_2 623 PCPNCRQMGHWRSDCP 638 799************9 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 0.2 1.7e-09 4e-06 6 100 .. 102 191 .. 98 219 .. 0.70 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 1.7e-09 -HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGG....SSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXX CS Gag_MA 6 tPLslllehfkdvraraknlsvevrkkklitlCsseWptl....nvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpfl 100 tPL ll ++ + +l ++++k+li +C++ Wp + + +WP+eGt +++++ + + k+G + Y+ + +L +PP+ +p T053875_2 102 TPLGCLLRNLPTL-----QLDQDLKRKRLIFFCTVAWPQYtldnQSRWPPEGTLNFNILNDLTNFCQ---KQGKWSEIKYVQGFWDLH-SPPDLCAPCS 191 5555555555443.....345589**************873333468*************9988655...5688899****9998985.6887776643 PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 2.3 0.00019 0.45 4 24 .. 572 592 .. 569 600 .. 0.84 2 ! 13.6 0.8 1.9e-05 0.045 7 22 .. 601 616 .. 598 623 .. 0.86 3 ! 5.3 0.1 0.0074 17 7 26 .. 624 641 .. 619 647 .. 0.82 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00019 zf-CCHC_3 4 saaCQkClkkGHwtYECknag 24 s aC kC+ GHw+ C+ ++ T053875_2 572 SGACFKCGNSGHWASRCPSQQ 592 789***********9999644 PP == domain 2 score: 13.6 bits; conditional E-value: 1.9e-05 zf-CCHC_3 7 CQkClkkGHwtYECkn 22 C kC+ +GHw+ +C+n T053875_2 601 CFKCGNPGHWAKQCPN 616 89*************6 PP == domain 3 score: 5.3 bits; conditional E-value: 0.0074 zf-CCHC_3 7 CQkClkkGHwtYECknager 26 C +C + GHw C+ g r T053875_2 624 CPNCRQMGHWRSDCP--GLR 641 999*******99998..555 PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.0 0.9 0.00047 1.1 6 20 .. 575 589 .. 574 590 .. 0.92 2 ! 17.1 3.6 1.4e-06 0.0033 4 21 .] 599 616 .. 597 616 .. 0.94 3 ! 9.1 3.6 0.00043 1 6 20 .. 624 638 .. 624 638 .. 0.91 4 ? -0.4 1.0 0.42 9.7e+02 6 12 .. 1073 1079 .. 1072 1079 .. 0.89 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00047 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C Cg+ GH+ + CP T053875_2 575 CFKCGNSGHWASRCP 589 888***********9 PP == domain 2 score: 17.1 bits; conditional E-value: 1.4e-06 zf-CCHC_2 4 YvChiCgkkGHyIqdCPt 21 Y C Cg++GH+ ++CP+ T053875_2 599 YNCFKCGNPGHWAKQCPN 616 9****************5 PP == domain 3 score: 9.1 bits; conditional E-value: 0.00043 zf-CCHC_2 6 ChiCgkkGHyIqdCP 20 C C + GH+ +dCP T053875_2 624 CPNCRQMGHWRSDCP 638 567***********9 PP == domain 4 score: -0.4 bits; conditional E-value: 0.42 zf-CCHC_2 6 ChiCgkk 12 C++C++k T053875_2 1073 CKMCFVK 1079 ****987 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.2 0.6 0.0015 3.6 33 48 .. 574 589 .. 572 590 .. 0.93 2 ! 10.2 1.2 0.00019 0.44 30 48 .. 597 615 .. 596 616 .. 0.95 3 ! 4.7 0.1 0.0095 22 34 48 .. 624 638 .. 621 639 .. 0.92 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0015 zf-CCHC_4 33 fCfiCgllGHsdkeCp 48 Cf Cg GH +++Cp T053875_2 574 ACFKCGNSGHWASRCP 589 6**************9 PP == domain 2 score: 10.2 bits; conditional E-value: 0.00019 zf-CCHC_4 30 LprfCfiCgllGHsdkeCp 48 Lp+ Cf Cg GH +k+Cp T053875_2 597 LPYNCFKCGNPGHWAKQCP 615 899***************9 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0095 zf-CCHC_4 34 CfiCgllGHsdkeCp 48 C +C +GH ++Cp T053875_2 624 CPNCRQMGHWRSDCP 638 99************8 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.3 1.9 7 1.6e+04 1 8 [. 183 190 .. 183 190 .. 0.87 2 ? 14.1 2.2 1.1e-05 0.025 1 21 [. 571 591 .. 571 593 .. 0.93 3 ? 9.9 1.9 0.00023 0.54 5 18 .. 601 614 .. 598 616 .. 0.93 4 ? 7.4 2.6 0.0014 3.2 5 18 .. 624 637 .. 620 639 .. 0.94 Alignments for each domain: == domain 1 score: -5.3 bits; conditional E-value: 7 ---B-TTT CS zf-CCHC_5 1 ppglCpRC 8 pp+lC C T053875_2 183 PPDLCAPC 190 89***877 PP == domain 2 score: 14.1 bits; conditional E-value: 1.1e-05 ---B-TTT-SSBS-TTT---S CS zf-CCHC_5 1 ppglCpRCkkgkHwardChsk 21 p+g C +C+ Hwa+ C s+ T053875_2 571 PSGACFKCGNSGHWASRCPSQ 591 799***************985 PP == domain 3 score: 9.9 bits; conditional E-value: 0.00023 -TTT-SSBS-TTT- CS zf-CCHC_5 5 CpRCkkgkHwardC 18 C +C+ Hwa++C T053875_2 601 CFKCGNPGHWAKQC 614 ************** PP == domain 4 score: 7.4 bits; conditional E-value: 0.0014 -TTT-SSBS-TTT- CS zf-CCHC_5 5 CpRCkkgkHwardC 18 Cp C + Hw +dC T053875_2 624 CPNCRQMGHWRSDC 637 ************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 458 (0.0280878); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 6462.41 // Query: T053875_3 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-20 72.3 0.0 5.1e-20 71.7 0.0 1.2 1 rve Integrase core domain 0.0014 18.2 0.0 0.0027 17.3 0.0 1.5 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.0 6.3e-24 5.1e-20 18 118 .. 1156 1254 .. 1152 1255 .. 0.93 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 6.3e-24 rve 18 pdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtl 115 ++++++ yll+ +d+fs++i a+++++e +a++v+ +l + + ++g p+++ s ng++++sk ++++ lg++++++ p++pq+ GkvEr n+++ T053875_3 1156 KKKKKFRYLLTLVDTFSGWIEAYPTTHE-TAEVVASTLIEHIIPRFGL-PRTIQSENGPAFISKIVKQVTTTLGVNWKLHTPYHPQSSGKVERANGLV 1251 4667799*********************.9999999998888888888.************************************************* PP rve 116 kde 118 k++ T053875_3 1252 KQH 1254 *97 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 3.3e-07 0.0027 2 35 .. 1227 1260 .. 1226 1265 .] 0.90 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 3.3e-07 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellneel 35 g+++++ p++Pq g+vE+ ng ++++l++ l T053875_3 1227 GVNWKLHTPYHPQSSGKVERANGLVKQHLIKLAL 1260 89**************************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6959.52 // Query: T196781_1 [L=1497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-14 51.2 0.0 1.6e+02 2.3 0.0 18.5 26 Amdo_NSP Amdovirus non-structural protein 2.9e-05 23.0 19.6 2.6 6.8 0.0 9.5 15 Transketolase_N Transketolase, thiamine diphosphate binding Domain annotation for each model (and alignments): >> Amdo_NSP Amdovirus non-structural protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.11 9.3e+02 20 36 .. 240 256 .. 237 257 .. 0.89 2 ? -0.0 0.0 0.11 8.8e+02 20 36 .. 282 298 .. 279 300 .. 0.89 3 ? -0.7 0.0 0.18 1.5e+03 19 36 .. 302 319 .. 299 324 .. 0.87 4 ? 0.1 0.0 0.1 8.2e+02 20 36 .. 324 340 .. 320 343 .. 0.89 5 ? 0.0 0.0 0.1 8.4e+02 20 36 .. 345 361 .. 341 363 .. 0.89 6 ? 0.3 0.0 0.083 6.7e+02 20 36 .. 366 382 .. 359 384 .. 0.89 7 ? -0.3 0.0 0.13 1.1e+03 19 36 .. 386 403 .. 381 409 .. 0.87 8 ? -1.2 0.0 0.26 2.1e+03 20 36 .. 408 424 .. 405 426 .. 0.89 9 ? 0.6 0.0 0.068 5.5e+02 19 36 .. 428 445 .. 425 446 .. 0.86 10 ? -2.1 0.0 0.47 3.8e+03 21 36 .. 451 466 .. 450 471 .. 0.88 11 ? 0.2 0.0 0.094 7.7e+02 20 36 .. 471 487 .. 467 493 .. 0.90 12 ? 0.0 0.0 0.1 8.4e+02 20 36 .. 492 508 .. 488 510 .. 0.89 13 ? 0.9 0.0 0.057 4.7e+02 19 36 .. 512 529 .. 506 532 .. 0.87 14 ? -0.2 0.0 0.13 1e+03 20 36 .. 534 550 .. 530 555 .. 0.90 15 ? 0.2 0.0 0.092 7.5e+02 20 36 .. 555 571 .. 546 574 .. 0.90 16 ? -2.9 0.0 0.84 6.9e+03 20 36 .. 576 592 .. 575 594 .. 0.88 17 ? 0.7 0.0 0.064 5.2e+02 19 36 .. 596 613 .. 591 614 .. 0.86 18 ? -2.1 0.0 0.47 3.8e+03 21 36 .. 619 634 .. 618 639 .. 0.88 19 ? -0.0 0.0 0.11 8.7e+02 20 36 .. 639 655 .. 634 656 .. 0.89 20 ? 0.0 0.0 0.1 8.4e+02 20 36 .. 660 676 .. 656 678 .. 0.89 21 ? 2.1 0.0 0.023 1.8e+02 20 36 .. 681 697 .. 677 700 .. 0.90 22 ? 0.0 0.0 0.1 8.4e+02 20 36 .. 702 718 .. 698 720 .. 0.89 23 ? 0.7 0.0 0.064 5.2e+02 19 36 .. 722 739 .. 719 741 .. 0.86 24 ? -0.4 0.0 0.14 1.2e+03 20 34 .. 744 758 .. 740 762 .. 0.88 25 ? -1.0 0.0 0.22 1.8e+03 19 34 .. 764 779 .. 758 781 .. 0.85 26 ? 2.3 0.0 0.02 1.6e+02 20 38 .. 787 805 .. 784 809 .. 0.91 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.11 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 240 KRTSSVLQMAYSGHPGD 256 8************9766 PP == domain 2 score: -0.0 bits; conditional E-value: 0.11 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 282 KRTSSVLQMAYSGHPGD 298 8************9766 PP == domain 3 score: -0.7 bits; conditional E-value: 0.18 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L + ys h D T196781_1 302 GKRTSSVLPMAYSGHPGD 319 59************9766 PP == domain 4 score: 0.1 bits; conditional E-value: 0.1 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 324 KRTSSVLQMAYSGHPGD 340 9************9766 PP == domain 5 score: 0.0 bits; conditional E-value: 0.1 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 345 KRTSSVLQMAYSGHPGD 361 9************9766 PP == domain 6 score: 0.3 bits; conditional E-value: 0.083 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 366 KRTSSVLQMAYSGHPGD 382 9************9766 PP == domain 7 score: -0.3 bits; conditional E-value: 0.13 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 386 GKRTSSVLQMEYSGHPGD 403 59************9766 PP == domain 8 score: -1.2 bits; conditional E-value: 0.26 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 408 KRTSSVLQMEYSGHPGD 424 8************9766 PP == domain 9 score: 0.6 bits; conditional E-value: 0.068 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 428 GKRTSSVLQMAYSGHPGD 445 59************9766 PP == domain 10 score: -2.1 bits; conditional E-value: 0.47 Amdo_NSP 21 rlskDLaliysnhhCD 36 r+s+ L++ ys h D T196781_1 451 RTSSVLQMAYSGHPGD 466 899*********9766 PP == domain 11 score: 0.2 bits; conditional E-value: 0.094 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 471 KRTSSVLQMAYSGHPGD 487 9************9766 PP == domain 12 score: 0.0 bits; conditional E-value: 0.1 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 492 KRTSSVLQMAYSGHPGD 508 9************9766 PP == domain 13 score: 0.9 bits; conditional E-value: 0.057 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 512 GKRTSSVLQMAYSGHPGD 529 59************9766 PP == domain 14 score: -0.2 bits; conditional E-value: 0.13 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 534 KRTSSVLQMAYSVHPGD 550 9************9766 PP == domain 15 score: 0.2 bits; conditional E-value: 0.092 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 555 KRTSSVLQMAYSGHPGD 571 9************9766 PP == domain 16 score: -2.9 bits; conditional E-value: 0.84 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 576 KRMSSVLQMEYSGHPGD 592 899**********9766 PP == domain 17 score: 0.7 bits; conditional E-value: 0.064 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 596 GKRTSSVLQMAYSGHPGD 613 59************9766 PP == domain 18 score: -2.1 bits; conditional E-value: 0.47 Amdo_NSP 21 rlskDLaliysnhhCD 36 r+s+ L++ ys h D T196781_1 619 RTSSVLQMAYSGHPGD 634 899*********9766 PP == domain 19 score: -0.0 bits; conditional E-value: 0.11 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 639 KRTSSVLQMAYSGHPGD 655 9************9766 PP == domain 20 score: 0.0 bits; conditional E-value: 0.1 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 660 KRTSSVLQMAYSGHPGD 676 9************9766 PP == domain 21 score: 2.1 bits; conditional E-value: 0.023 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L+++ys h D T196781_1 681 KRTSSVLQMVYSGHPGD 697 9************9766 PP == domain 22 score: 0.0 bits; conditional E-value: 0.1 Amdo_NSP 20 krlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 702 KRTSSVLQMAYSGHPGD 718 9************9766 PP == domain 23 score: 0.7 bits; conditional E-value: 0.064 Amdo_NSP 19 mkrlskDLaliysnhhCD 36 kr+s+ L++ ys h D T196781_1 722 GKRTSSVLQMAYSGHPGD 739 59************9766 PP == domain 24 score: -0.4 bits; conditional E-value: 0.14 Amdo_NSP 20 krlskDLaliysnhh 34 kr+s+ L++ ys h T196781_1 744 KRTSSVLQMAYSGHP 758 9***********996 PP == domain 25 score: -1.0 bits; conditional E-value: 0.22 Amdo_NSP 19 mkrlskDLaliysnhh 34 kr+s+ L++ ys h T196781_1 764 GKRMSSVLQMAYSGHL 779 59***********996 PP == domain 26 score: 2.3 bits; conditional E-value: 0.02 Amdo_NSP 20 krlskDLaliysnhhCDiq 38 kr+s+ L++ ys h Di T196781_1 787 KRTSSVLQMAYSGHPGDIR 805 8*************99985 PP >> Transketolase_N Transketolase, thiamine diphosphate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.23 1.9e+03 17 34 .. 246 263 .. 244 268 .. 0.77 2 ! 2.5 0.1 0.0064 52 20 60 .. 270 309 .. 263 320 .. 0.84 3 ? -2.0 0.0 0.15 1.2e+03 17 38 .. 330 351 .. 326 355 .. 0.79 4 ! 4.8 0.0 0.0012 10 17 61 .. 351 394 .. 345 401 .. 0.85 5 ! 2.9 0.0 0.0047 38 18 61 .. 394 436 .. 389 443 .. 0.85 6 ? -1.1 0.0 0.079 6.5e+02 17 39 .. 435 457 .. 430 468 .. 0.73 7 ? -1.1 0.0 0.08 6.5e+02 17 39 .. 456 478 .. 451 489 .. 0.73 8 ! 4.4 0.1 0.0017 14 17 61 .. 477 520 .. 471 530 .. 0.85 9 ? -0.9 0.0 0.07 5.7e+02 17 41 .. 519 543 .. 515 551 .. 0.75 10 ! 6.8 0.0 0.00032 2.6 17 61 .. 561 604 .. 556 615 .. 0.88 11 ? -0.4 0.0 0.05 4e+02 18 40 .. 625 647 .. 618 667 .. 0.62 12 ? -0.6 0.0 0.055 4.5e+02 18 40 .. 646 668 .. 641 687 .. 0.61 13 ? -0.9 0.0 0.067 5.5e+02 18 38 .. 667 687 .. 661 713 .. 0.69 14 ! 1.9 0.0 0.0098 80 18 60 .. 688 729 .. 682 731 .. 0.84 15 ! 4.7 0.0 0.0014 11 17 61 .. 729 772 .. 725 779 .. 0.84 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.23 HHHHT-S--HHHHHHHHH CS Transketolase_N 17 vekaksGhPGaplgladi 34 ++ a sGhPG ++g T196781_1 246 LQMAYSGHPGDTFGGNRT 263 57899*****99986655 PP == domain 2 score: 2.5 bits; conditional E-value: 0.0064 HT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEE CS Transketolase_N 20 aksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvL 60 a sGhPG ++g + vl h P d+ w +R vL T196781_1 270 AYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVL 309 789*********99999998887777.******99988887 PP == domain 3 score: -2.0 bits; conditional E-value: 0.15 HHHHT-S--HHHHHHHHHHHHH CS Transketolase_N 17 vekaksGhPGaplgladiaevl 38 ++ a sGhPG ++g + vl T196781_1 330 LQMAYSGHPGDTFGGKRTSSVL 351 67899*****999977666665 PP == domain 4 score: 4.8 bits; conditional E-value: 0.0012 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g + vl h P d+ w +R vL T196781_1 351 LQMAYSGHPGDTFGRKRTSSVLQMAYSGH-PGDTFWGKRTSSVLQ 394 67899************999998888777.******999888875 PP == domain 5 score: 2.9 bits; conditional E-value: 0.0047 HHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 18 ekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 + sGhPG ++g + vl + h P d+ w +R vL T196781_1 394 QMEYSGHPGDTFGGKRTSSVLQMEYSGH-PGDTFWGKRTSSVLQ 436 55679*************9999998888.*******99988885 PP == domain 6 score: -1.1 bits; conditional E-value: 0.079 HHHHT-S--HHHHHHHHHHHHHH CS Transketolase_N 17 vekaksGhPGaplgladiaevlf 39 ++ a sGhPG ++g + vl T196781_1 435 LQMAYSGHPGDTFGGNRTSSVLQ 457 57789999999998777777664 PP == domain 7 score: -1.1 bits; conditional E-value: 0.08 HHHHT-S--HHHHHHHHHHHHHH CS Transketolase_N 17 vekaksGhPGaplgladiaevlf 39 ++ a sGhPG ++g + vl T196781_1 456 LQMAYSGHPGDTFGGKRTSSVLQ 478 57789999999998777777664 PP == domain 8 score: 4.4 bits; conditional E-value: 0.0017 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g + vl h P d+ w +R vL T196781_1 477 LQMAYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVLQ 520 67899***********9999998887777.*******99988885 PP == domain 9 score: -0.9 bits; conditional E-value: 0.07 HHHHT-S--HHHHHHHHHHHHHHHC CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkk 41 ++ a sGhPG ++g + vl T196781_1 519 LQMAYSGHPGDTFGGKRTSSVLQMA 543 67899*******9988888777554 PP == domain 10 score: 6.8 bits; conditional E-value: 0.00032 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g ++ vl + h P d+ w +R vL T196781_1 561 LQMAYSGHPGDTFGGKRMSSVLQMEYSGH-PGDTFWGKRTSSVLQ 604 67899*****************9999988.********9988885 PP == domain 11 score: -0.4 bits; conditional E-value: 0.05 HHHT-S--HHHHHHHHHHHHHHH CS Transketolase_N 18 ekaksGhPGaplgladiaevlfk 40 + a sGhPG ++g + vl T196781_1 625 QMAYSGHPGDTFGGKRTSSVLQM 647 56667777777766665555543 PP == domain 12 score: -0.6 bits; conditional E-value: 0.055 HHHT-S--HHHHHHHHHHHHHHH CS Transketolase_N 18 ekaksGhPGaplgladiaevlfk 40 + a sGhPG ++g + vl T196781_1 646 QMAYSGHPGDTFGGKRTSSVLQM 668 56677777777776665555543 PP == domain 13 score: -0.9 bits; conditional E-value: 0.067 HHHT-S--HHHHHHHHHHHHH CS Transketolase_N 18 ekaksGhPGaplgladiaevl 38 + a sGhPG ++g + vl T196781_1 667 QMAYSGHPGDTFGGKRTSSVL 687 677888888888876666655 PP == domain 14 score: 1.9 bits; conditional E-value: 0.0098 HHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEE CS Transketolase_N 18 ekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvL 60 + sGhPG ++g + vl h P d+ w +R vL T196781_1 688 QMVYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVL 729 66789*********99999998877777.****9999987766 PP == domain 15 score: 4.7 bits; conditional E-value: 0.0014 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g + vl h P+d+ w +R vL T196781_1 729 LQMAYSGHPGDTFGGKRTSSVLQMAYSGH-PRDTFWGKRMSSVLQ 772 67899************999998888777.******999888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 98 (0.00601006); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7647.61 // Query: T196781_2 [L=1496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 8391.77 // Query: T196781_3 [L=1496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-07 30.1 56.9 3.8 7.1 0.1 23.8 27 Fels1 Fels-1 Prophage Protein-like 0.00024 20.8 150.3 8.3 6.3 0.1 26.6 27 HCBP_related Haemolysin-type calcium binding protein related Domain annotation for each model (and alignments): >> Fels1 Fels-1 Prophage Protein-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.0 1.1 9e+03 11 18 .. 243 250 .. 241 250 .. 0.86 2 ? 1.2 0.0 0.032 2.6e+02 9 18 .. 262 271 .. 259 271 .. 0.88 3 ? 0.2 0.0 0.066 5.4e+02 9 18 .. 283 292 .. 280 292 .. 0.88 4 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 304 313 .. 302 313 .. 0.88 5 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 325 334 .. 322 334 .. 0.88 6 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 346 355 .. 343 355 .. 0.88 7 ? 1.9 0.0 0.02 1.6e+02 7 18 .. 365 376 .. 362 376 .. 0.86 8 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 388 397 .. 386 397 .. 0.88 9 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 409 418 .. 406 418 .. 0.88 10 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 430 439 .. 428 439 .. 0.88 11 ? 1.2 0.0 0.032 2.6e+02 9 18 .. 451 460 .. 448 460 .. 0.88 12 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 472 481 .. 469 481 .. 0.88 13 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 493 502 .. 490 502 .. 0.88 14 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 514 523 .. 512 523 .. 0.88 15 ! 7.1 0.1 0.00046 3.8 9 19 .. 535 545 .. 532 546 .. 0.90 16 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 556 565 .. 553 565 .. 0.88 17 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 577 586 .. 574 586 .. 0.88 18 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 598 607 .. 596 607 .. 0.88 19 ? 1.2 0.0 0.032 2.6e+02 9 18 .. 619 628 .. 616 628 .. 0.88 20 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 640 649 .. 637 649 .. 0.88 21 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 661 670 .. 658 670 .. 0.88 22 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 682 691 .. 679 691 .. 0.88 23 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 703 712 .. 700 712 .. 0.88 24 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 724 733 .. 722 733 .. 0.88 25 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 745 754 .. 742 754 .. 0.88 26 ? 1.2 0.0 0.033 2.7e+02 9 18 .. 766 775 .. 764 775 .. 0.88 27 ? 1.3 0.0 0.031 2.5e+02 9 18 .. 788 797 .. 785 797 .. 0.88 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 1.1 Fels1 11 fspanGVf 18 f +a GVf T196781_3 243 FCFADGVF 250 889***98 PP == domain 2 score: 1.2 bits; conditional E-value: 0.032 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 262 DEFSFADGVF 271 68*******9 PP == domain 3 score: 0.2 bits; conditional E-value: 0.066 Fels1 9 tifspanGVf 18 +fs+a G+f T196781_3 283 DEFSFADGIF 292 68*******8 PP == domain 4 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 304 DEFSFADGVF 313 68*******9 PP == domain 5 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 325 DEFSFADGVF 334 68*******9 PP == domain 6 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 346 DEFSFADGVF 355 68*******9 PP == domain 7 score: 1.9 bits; conditional E-value: 0.02 Fels1 7 datifspanGVf 18 ++ +fs+a GVf T196781_3 365 KEDEFSFADGVF 376 5679*******9 PP == domain 8 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 388 DEFSFADGVF 397 68*******9 PP == domain 9 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 409 DEFSFADGVF 418 68*******9 PP == domain 10 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 430 DEFSFADGVF 439 68*******9 PP == domain 11 score: 1.2 bits; conditional E-value: 0.032 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 451 DEFSFADGVF 460 68*******9 PP == domain 12 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 472 DEFSFADGVF 481 68*******9 PP == domain 13 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 493 DEFSFADGVF 502 68*******9 PP == domain 14 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 514 DEFSFADGVF 523 68*******9 PP == domain 15 score: 7.1 bits; conditional E-value: 0.00046 Fels1 9 tifspanGVfC 19 +fs+a GVfC T196781_3 535 DEFSFADGVFC 545 68********* PP == domain 16 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 556 DEFSFADGVF 565 68*******9 PP == domain 17 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 577 DEFSFADGVF 586 68*******9 PP == domain 18 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 598 DEFSFADGVF 607 68*******9 PP == domain 19 score: 1.2 bits; conditional E-value: 0.032 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 619 DEFSFADGVF 628 68*******9 PP == domain 20 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 640 DEFSFADGVF 649 68*******9 PP == domain 21 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 661 DEFSFADGVF 670 68*******9 PP == domain 22 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 682 DEFSFADGVF 691 68*******9 PP == domain 23 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 703 DEFSFADGVF 712 68*******9 PP == domain 24 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 724 DEFSFADGVF 733 68*******9 PP == domain 25 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 745 DEFSFADGVF 754 68*******9 PP == domain 26 score: 1.2 bits; conditional E-value: 0.033 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 766 DEFSFADGVF 775 68*******9 PP == domain 27 score: 1.3 bits; conditional E-value: 0.031 Fels1 9 tifspanGVf 18 +fs+a GVf T196781_3 788 DEFSFADGVF 797 68*******9 PP >> HCBP_related Haemolysin-type calcium binding protein related domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.6 1.5 0.0072 59 28 39 .. 241 252 .. 228 254 .. 0.82 2 ! 4.9 0.2 0.0028 23 28 39 .. 262 273 .. 256 275 .. 0.88 3 ? 3.0 0.2 0.011 87 28 39 .. 283 294 .. 277 296 .. 0.89 4 ! 4.5 0.4 0.0038 31 28 39 .. 304 315 .. 300 317 .. 0.90 5 ! 4.8 0.2 0.0031 25 28 39 .. 325 336 .. 319 338 .. 0.89 6 ! 4.8 0.2 0.0031 25 28 39 .. 346 357 .. 340 359 .. 0.89 7 ! 4.5 0.3 0.0037 30 28 39 .. 367 378 .. 363 380 .. 0.90 8 ! 4.2 0.6 0.0045 37 28 39 .. 388 399 .. 385 401 .. 0.90 9 ! 4.8 0.2 0.0031 25 28 39 .. 409 420 .. 403 422 .. 0.89 10 ! 4.2 0.6 0.0045 37 28 39 .. 430 441 .. 427 443 .. 0.90 11 ! 4.9 0.2 0.0028 23 28 39 .. 451 462 .. 445 464 .. 0.88 12 ! 4.8 0.2 0.0031 25 28 39 .. 472 483 .. 466 485 .. 0.89 13 ! 4.8 0.2 0.0031 25 28 39 .. 493 504 .. 487 506 .. 0.89 14 ! 4.2 0.6 0.0045 37 28 39 .. 514 525 .. 511 527 .. 0.90 15 ? -1.1 0.3 0.21 1.7e+03 28 36 .. 535 543 .. 531 544 .. 0.88 16 ! 4.8 0.2 0.0031 25 28 39 .. 556 567 .. 550 569 .. 0.89 17 ! 4.8 0.2 0.0031 25 28 39 .. 577 588 .. 571 590 .. 0.89 18 ! 4.2 0.6 0.0045 37 28 39 .. 598 609 .. 595 611 .. 0.90 19 ! 4.9 0.2 0.0028 23 28 39 .. 619 630 .. 613 632 .. 0.88 20 ! 4.8 0.2 0.0031 25 28 39 .. 640 651 .. 634 653 .. 0.89 21 ! 4.8 0.2 0.0031 25 28 39 .. 661 672 .. 655 674 .. 0.89 22 ! 4.8 0.2 0.0031 25 28 39 .. 682 693 .. 676 695 .. 0.89 23 ! 4.8 0.2 0.0031 25 28 39 .. 703 714 .. 697 716 .. 0.89 24 ! 4.2 0.6 0.0045 37 28 39 .. 724 735 .. 721 737 .. 0.90 25 ! 6.3 0.1 0.001 8.3 28 41 .. 745 758 .. 739 759 .. 0.89 26 ! 4.2 0.6 0.0046 38 28 39 .. 766 777 .. 764 779 .. 0.90 27 ! 4.5 0.4 0.0038 31 28 39 .. 788 799 .. 784 801 .. 0.90 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.0072 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 241 DKFCFADGVFWT 252 799********9 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0028 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 262 DEFSFADGVFWT 273 689********9 PP == domain 3 score: 3.0 bits; conditional E-value: 0.011 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG W+ T196781_3 283 DEFSFADGIFWT 294 6899*******8 PP == domain 4 score: 4.5 bits; conditional E-value: 0.0038 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 304 DEFSFADGVFWT 315 5899*******9 PP == domain 5 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 325 DEFSFADGVFWT 336 6899*******9 PP == domain 6 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 346 DEFSFADGVFWT 357 6899*******9 PP == domain 7 score: 4.5 bits; conditional E-value: 0.0037 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 367 DEFSFADGVFWT 378 5899*******9 PP == domain 8 score: 4.2 bits; conditional E-value: 0.0045 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 388 DEFSFADGVFWT 399 5899*******9 PP == domain 9 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 409 DEFSFADGVFWT 420 6899*******9 PP == domain 10 score: 4.2 bits; conditional E-value: 0.0045 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 430 DEFSFADGVFWT 441 5899*******9 PP == domain 11 score: 4.9 bits; conditional E-value: 0.0028 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 451 DEFSFADGVFWT 462 689********9 PP == domain 12 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 472 DEFSFADGVFWT 483 6899*******9 PP == domain 13 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 493 DEFSFADGVFWT 504 6899*******9 PP == domain 14 score: 4.2 bits; conditional E-value: 0.0045 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 514 DEFSFADGVFWT 525 5899*******9 PP == domain 15 score: -1.1 bits; conditional E-value: 0.21 HCBP_related 28 eqieFaDGt 36 +++ FaDG+ T196781_3 535 DEFSFADGV 543 5899****6 PP == domain 16 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 556 DEFSFADGVFWT 567 6899*******9 PP == domain 17 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 577 DEFSFADGVFWT 588 6899*******9 PP == domain 18 score: 4.2 bits; conditional E-value: 0.0045 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 598 DEFSFADGVFWT 609 5899*******9 PP == domain 19 score: 4.9 bits; conditional E-value: 0.0028 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 619 DEFSFADGVFWT 630 689********9 PP == domain 20 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 640 DEFSFADGVFWT 651 6899*******9 PP == domain 21 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 661 DEFSFADGVFWT 672 6899*******9 PP == domain 22 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 682 DEFSFADGVFWT 693 6899*******9 PP == domain 23 score: 4.8 bits; conditional E-value: 0.0031 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 703 DEFSFADGVFWT 714 6899*******9 PP == domain 24 score: 4.2 bits; conditional E-value: 0.0045 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 724 DEFSFADGVFWT 735 5899*******9 PP == domain 25 score: 6.3 bits; conditional E-value: 0.001 HCBP_related 28 eqieFaDGtvWdaa 41 +++ FaDG+ W+ a T196781_3 745 DEFSFADGVFWTSA 758 6899*******987 PP == domain 26 score: 4.2 bits; conditional E-value: 0.0046 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 766 DEFSFADGVFWT 777 5799*******9 PP == domain 27 score: 4.5 bits; conditional E-value: 0.0038 HCBP_related 28 eqieFaDGtvWd 39 +++ FaDG+ W+ T196781_3 788 DEFSFADGVFWT 799 6899*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 8230.39 // Query: T035280_1 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2940.93 // Query: T035280_2 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 2940.93 // Query: T035280_3 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 2877.66 // Query: T177666_1 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-45 153.9 0.0 8.7e-45 153.4 0.0 1.1 1 PNMA PNMA Domain annotation for each model (and alignments): >> PNMA PNMA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 153.4 0.0 5.4e-49 8.7e-45 4 131 .. 401 528 .. 399 550 .. 0.94 Alignments for each domain: == domain 1 score: 153.4 bits; conditional E-value: 5.4e-49 PNMA 4 alLedWCrgmgvdaqralLvlgIpedceeaeieetLqaaLkpLGryrVlgkiFrreenakaaLvElaeevnlsliPreipGkggvWrVvvkpptqDaefl 103 alLe+ C++++vd ++l++lgIpedc+++e+ee+++ LkpLG++ V gk +++e+++kaa++ l+e++n++++Prei+GkggvWrVv+ p++qD efl T177666_1 401 ALLEHGCKALEVDSYKSLMILGIPEDCNHEEFEEIIRLPLKPLGKFEVAGKAYLEEDKSKAAIIQLTEDINYAVVPREIKGKGGVWRVVYMPRKQDIEFL 500 89************************************************************************************************** PP PNMA 104 krlneflqaegrtvedvvrllgleeepg 131 ++ln flq egrtved++r+l e p+ T177666_1 501 TKLNLFLQSEGRTVEDMARVLRQELCPP 528 ********************99887776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.53 # Mc/sec: 7529.92 // Query: T177666_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7529.92 // Query: T177666_3 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7385.18 // Query: T353312_1 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 6987.84 // Query: T353312_2 [L=1318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7114.29 // Query: T353312_3 [L=1318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 7251.10 // Query: T057650_1 [L=6155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.3 5.7 14.2 5.1 5.0 14.2 1.1 1 Nop14 Nop14-like family Domain annotation for each model (and alignments): >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 14.2 0.00032 5.1 365 449 .. 4030 4109 .. 4018 4112 .. 0.41 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.00032 Nop14 365 seeeeeeeeedeeeeedeeeee.eeeededdlsdleseeeeeedeleeelleeekkaaeekkekkkkkkkseekakeelpytfpcP 449 +++++++eee+eeeee e e+e e e + + + + e eeeeee+e eee+ +++++e+ +++++ ++++++py ++P T057650_1 4030 KKKKKKKEEEEEEEEEGEGEGEgEGEGEGEGEGEGEGEEEEEEEE------EEEEAGRAFQAEEPQHAQSPGYRRSTKVPYLQSFP 4109 222222223333333333333223333333333322223233333......22233333444444455555556677778776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 645 (0.039556); expected 326.1 (0.02) Passed bias filter: 306 (0.0187661); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.37u 0.39s 00:00:02.76 Elapsed: 00:00:00.74 # Mc/sec: 23795.15 // Query: T057650_2 [L=6155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 7.8 40.0 1.6 7.2 40.0 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 1.5 8.1 24.1 2.4 7.4 24.1 1.2 1 DUF1510 Protein of unknown function (DUF1510) 2.1 8.0 22.7 3.9 7.2 22.7 1.3 1 SRP-alpha_N Signal recognition particle, alpha subunit, N 4.5 5.6 31.2 6.9 5.0 31.2 1.1 1 TFIIF_alpha Transcription initiation factor IIF, alpha su 6 5.4 18.6 9.3 4.8 18.6 1.1 1 Tim54 Inner membrane protein import complex subunit Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 40.0 0.00051 1.6 102 174 .. 4023 4090 .. 4007 4126 .. 0.45 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00051 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 102 knksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekerereka 174 ++ s+k++++r+ kkk++kkkk+ekeke+ +ke+ kek ++kekek+k+kkkkk+k++e++ ++ +++ T057650_2 4023 DSVSKKKKKRRRRKKKKKKKKKKEKEKEK-----EKEKEKEKEKEKEKEKKKKKKKKKKKRQEEHFRQRNHSM 4090 33333333333333333333333333331.....122222222222222222222222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 24.1 0.00074 2.4 52 138 .. 4027 4113 .. 4011 4120 .. 0.38 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00074 DUF1510 52 eeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenvekavtnpdWkpvgTeqe 138 ++++++ ++kk+++++++e+eke+e+++e+e+++e+e+e++k+++++k+k ++++ + + + +++++ +p k+ +T q+ T057650_2 4027 KKKKKRRRRKKKKKKKKKKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKRQEEHFRQRNHSMRRAQDIDDLQRSPICKASPTGQS 4113 111111111222222222222222222222222222222222222222333233333344444444555555555555566666655 PP >> SRP-alpha_N Signal recognition particle, alpha subunit, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 22.7 0.0012 3.9 184 252 .. 4026 4090 .. 3995 4124 .. 0.45 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0012 XX.XXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXX CS SRP-alpha_N 184 gpaaedlsrrarkkankkrssagassgdeakasksskkkkkkpkkkgkkaRvWdadgsadeed..kLDySa 252 ++++++ rr++kk++kk++++++++++e++++k+++k+k+k+kkk+kk+++ +++ + +S T057650_2 4026 SKKKKKRRRRKKKKKKKKKKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKRQEE------HfrQRNHSM 4090 22222233333333322222222222222222222222222222222222222211......112333333 PP >> TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 31.2 0.0021 6.9 292 377 .. 4026 4107 .. 4017 4120 .. 0.48 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0021 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX CS TFIIF_alpha 292 sendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdk.kdSddeedsddsDideedsvslvka 377 s+ +++k +++kk+++++e+e+eke+ek++e++k+++k+kk+kk+kkkkk++++ + + +Did+ + +++ ka T057650_2 4026 SK-----KKKKRRRRKKKKKKKKKKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKRQEEhFRQRNHSMRRAQDIDDLQRSPICKA 4107 22.....22223333333344444444444444443333333333333333333333333203333555566788888887777666 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 18.6 0.0028 9.3 200 260 .. 4029 4084 .. 4005 4107 .. 0.42 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0028 Tim54 200 eaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYa 260 ++++++++++++k++++e+e+e+e+eke+eke+eke+e+++++ k+ k+ ++e++ T057650_2 4029 KKKRRRRKKKKKKKKKKEKEKEKEKEKEKEKEKEKEKEKKKKK-----KKKKKKRQEEHFR 4084 1111111111111111111112222222222222222222222.....2222233333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2287 (0.140255); expected 326.1 (0.02) Passed bias filter: 842 (0.0516374); expected 326.1 (0.02) Passed Vit filter: 441 (0.0270453); expected 16.3 (0.001) Passed Fwd filter: 82 (0.00502882); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 6.29u 0.50s 00:00:06.79 Elapsed: 00:00:01.12 # Mc/sec: 15721.79 // Query: T057650_3 [L=6154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 723 (0.0443395); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.88u 0.40s 00:00:03.28 Elapsed: 00:00:01.00 # Mc/sec: 17605.55 // Query: T182780_1 [L=1604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.3 7.0 74 3.3 0.1 5.1 5 Rib Rib/alpha-like repeat Domain annotation for each model (and alignments): >> Rib Rib/alpha-like repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.1 0.011 1.7e+02 12 31 .. 823 842 .. 818 846 .. 0.89 2 ? 3.1 0.0 0.0052 84 12 30 .. 848 866 .. 844 870 .. 0.90 3 ? 3.0 0.0 0.0055 90 12 30 .. 873 891 .. 869 894 .. 0.90 4 ? 3.3 0.1 0.0045 74 12 31 .. 898 917 .. 894 926 .. 0.87 5 ? 1.8 0.1 0.013 2.2e+02 12 31 .. 923 942 .. 919 952 .. 0.87 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.011 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT+ +W++ T182780_1 823 TENTRNKPRMLDGTQRSWNH 842 8999**************85 PP == domain 2 score: 3.1 bits; conditional E-value: 0.0052 Rib 12 tdgikNksdlPdGTkytWk 30 t++ +Nk+ + dGT+ +W+ T182780_1 848 TENTRNKPRMLDGTQCSWN 866 8999**************8 PP == domain 3 score: 3.0 bits; conditional E-value: 0.0055 Rib 12 tdgikNksdlPdGTkytWk 30 t++ +Nk+ + dGT+ +W+ T182780_1 873 TENTRNKPRMLDGTQCSWN 891 8999**************7 PP == domain 4 score: 3.3 bits; conditional E-value: 0.0045 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT+ +W++ T182780_1 898 TENARNKPRMLDGTQCSWNH 917 8999**************86 PP == domain 5 score: 1.8 bits; conditional E-value: 0.013 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT +W++ T182780_1 923 TENTRNKPRMLDGTPCSWNH 942 8999**************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 8050.48 // Query: T182780_2 [L=1604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 7777.58 // Query: T182780_3 [L=1604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.55 # Mc/sec: 8343.22 // Query: T351103_1 [L=2005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 13.7 0.1 0.083 12.6 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 5.1e-06 0.083 15 43 .. 1088 1120 .. 1084 1127 .. 0.80 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.1e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351103_1 1088 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1120 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 10429.03 // Query: T351103_2 [L=2005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-21 74.0 7.5 1.6e-20 72.6 4.6 2.6 2 Transposase_1 Transposase (partial DDE domain) 0.0031 17.1 0.4 0.0055 16.3 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.06 3.3e+02 25 38 .. 898 911 .. 894 913 .. 0.80 2 ! 72.6 4.6 3e-24 1.6e-20 14 79 .. 1083 1152 .. 1062 1153 .. 0.86 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.06 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351103_2 898 EKLSKNAMLTIVWS 911 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 3e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351103_2 1083 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1152 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.4 1e-06 0.0055 55 143 .. 1123 1216 .. 1058 1218 .. 0.75 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1e-06 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351103_2 1123 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1216 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 2.5e-05 0.14 5 23 .. 1930 1948 .. 1927 1954 .. 0.86 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.5e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351103_2 1930 NLVCQVFPREYLANHNCGR 1948 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 9104.70 // Query: T351103_3 [L=2005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 8690.85 // Query: T249678_1 [L=3590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.60 # Mc/sec: 17117.30 // Query: T249678_2 [L=3589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.63 # Mc/sec: 16297.65 // Query: T249678_3 [L=3589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 543 (0.0333006); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:00.75 # Mc/sec: 13690.03 // Query: T138037_1 [L=4145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.29s 00:00:01.74 Elapsed: 00:00:00.83 # Mc/sec: 14286.92 // Query: T138037_2 [L=4145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.66 10.3 4.1 1.1 9.6 4.1 1.2 1 CENP-B_dimeris Centromere protein B dimerisation domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 4.1 6.6e-05 1.1 24 42 .. 1740 1758 .. 1738 1777 .. 0.66 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 6.6e-05 CENP-B_dimeris 24 eedeededeeddedddevp 42 ++d++d+d++dd+d+d v T138037_2 1740 DDDDDDDDDDDDDDGDRVC 1758 5677777777777888774 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.71 # Mc/sec: 16701.61 // Query: T138037_3 [L=4145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.36s 00:00:01.83 Elapsed: 00:00:00.96 # Mc/sec: 12352.23 // Query: T293990_1 [L=3466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.35s 00:00:01.59 Elapsed: 00:00:00.70 # Mc/sec: 14165.20 // Query: T293990_2 [L=3465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 13217.03 // Query: T293990_3 [L=3465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 13579.15 // Query: T125103_1 [L=3695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 457 (0.0280265); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.36s 00:00:02.31 Elapsed: 00:00:00.81 # Mc/sec: 13050.33 // Query: T125103_2 [L=3694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.34s 00:00:02.13 Elapsed: 00:00:00.73 # Mc/sec: 14476.58 // Query: T125103_3 [L=3694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.36s 00:00:01.87 Elapsed: 00:00:00.67 # Mc/sec: 15772.99 // Query: T227363_1 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.67 # Mc/sec: 12515.06 // Query: T227363_2 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.64 # Mc/sec: 13101.71 // Query: T227363_3 [L=2930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.66 # Mc/sec: 12700.35 // Query: T010862_1 [L=1745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 6933.54 // Query: T010862_2 [L=1744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 7559.53 // Query: T010862_3 [L=1744] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1744 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 8179.16 // Query: T058041_1 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 4010.01 // Query: T058041_2 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.69 # Mc/sec: 3428.85 // Query: T058041_3 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.68 # Mc/sec: 3479.27 // Query: T266286_1 [L=4968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.38s 00:00:02.00 Elapsed: 00:00:00.73 # Mc/sec: 19469.32 // Query: T266286_2 [L=4967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-94 317.3 20.5 4.1e-92 308.7 10.8 2.2 2 Transposase_22 L1 transposable element 6.1e-06 25.6 2.1 1.4e-05 24.4 2.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 2.1 2e-06 0.017 35 121 .. 1436 1514 .. 1431 1518 .. 0.78 2 ! 308.7 10.8 5e-96 4.1e-92 146 368 .] 1521 1745 .. 1520 1745 .. 0.97 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 2e-06 .XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 35 eeldpdlkdflelriedik...kdfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 e++++++d ++l + +++ k +++elke + ++ ke + +k ++e + v + k+l+elkt +el +++ T266286_2 1436 MEQSWMKNDIDQLTEIGFRr*vKTNFSELKEHVLTHLKEAKsLEKRLDEWLTRINS------------VEKNLKDLMELKTMERELCNTCT 1514 49****************95555*****************9888999985544333............22234678888888888877775 PP == domain 2 score: 308.7 bits; conditional E-value: 5e-96 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE.EE CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei.yr 236 +++eer+s +ed+++ei++e k ekr+k+ eq lq+ d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iq i + T266286_2 1521 NQVEERISVIEDQMNEINQEDKCGEKRVKRTEQGLQE-I*DYVKRPNLCLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQKI*K- 1611 699*********************************8.6779**********************************************8666. PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH..HHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre..wtdviqilkekkfqPrllyPaklsiiidGe 327 tP+r++ +ra++rhii+r tkv++k+k+l+a+rek +vt kGkPirltadl aetl+a re t ++ilkek+fqPr++y akls+i++Ge T266286_2 1612 TPQRYSLRRATPRHIIIRCTKVEMKEKMLRAAREKDQVTHKGKPIRLTADLLAETLQAGRE*gLT--FNILKEKNFQPRISYTAKLSFISEGE 1702 9***********************************************************88565..9************************* PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f d ++lrd+++trPal++llke ++er++ryq+l++++ T266286_2 1703 IKSFTDNKMLRDFVTTRPALQELLKEvlNMERNNRYQPLQKHA 1745 ****************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.4 2.1 1.8e-09 1.4e-05 4 19 .] 3004 3019 .. 3004 3019 .. 0.98 Alignments for each domain: == domain 1 score: 24.4 bits; conditional E-value: 1.8e-09 DUF1725 4 gKWMELEnIILSEisQ 19 g+WM+LE+IILS+isQ T266286_2 3004 GTWMKLETIILSKISQ 3019 9**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.77u 0.43s 00:00:02.20 Elapsed: 00:00:00.86 # Mc/sec: 16522.96 // Query: T266286_3 [L=4967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-20 70.9 0.2 1.7e-19 70.1 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 0.2 1e-23 1.7e-19 54 193 .. 2343 2492 .. 2334 2515 .. 0.91 Alignments for each domain: == domain 1 score: 70.1 bits; conditional E-value: 1e-23 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS RVT_1 54 aveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnell 151 ++++++ ++k+++ +++++++D +kaF +++ ++ l++l++++++ + + +i++++ +++ ++ +ng++ e ++ k+g++q ++lS llfn++++ T266286_3 2343 QINKCNPSIKQTNDKNHMITIDAEKAFKRIQQHFMLKTLNKLGIDGMYLIIIRTIYDKPTDNIILNGQKLEAFPLKTGTRQECPLSSLLFNIVLEVPA 2440 458888999999********************************************************99**************************99 PP TT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 152 relrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 r + ++ ++ tl+++aDD++++ ++ ++q++ + ++++ k+ T266286_3 2441 RAIWQEKaikgiqlgkEEATLSLFADDMIVYLENpIVSAQNHHKLISNFSKS 2492 99988878**************************666699999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.86u 0.39s 00:00:02.25 Elapsed: 00:00:00.82 # Mc/sec: 17328.95 // Query: T138390_1 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 6096.85 // Query: T138390_2 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.73 # Mc/sec: 5094.63 // Query: T138390_3 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 563 (0.0345272); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 5634.97 // Query: T259012_1 [L=2921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 10852.58 // Query: T259012_2 [L=2921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 12110.85 // Query: T259012_3 [L=2921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.6 6.6 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00064 10 6 41 .. 1980 2015 .. 1966 2026 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00064 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T259012_3 1980 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2015 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 11606.23 // Query: T347703_1 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 10622.93 // Query: T347703_2 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-20 72.3 0.6 4.5e-20 71.2 0.6 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.2 0.6 2.8e-24 4.5e-20 9 59 .. 1039 1089 .. 1034 1093 .. 0.97 Alignments for each domain: == domain 1 score: 71.2 bits; conditional E-value: 2.8e-24 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevY 59 aqWld++e+ k++pkp+lhqkkv++tVwWsa++l y+fl+p++titse++ T347703_2 1039 AQWLDQEESSKHFPKPNLHQKKVIVTVWWSAASLTRYSFLNPSKTITSEKH 1089 7************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 11108.82 // Query: T347703_3 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0079 15.9 0.2 0.019 14.7 0.2 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.2 1.2e-06 0.019 56 80 .] 1088 1112 .. 1085 1112 .. 0.92 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.2e-06 Transposase_1 56 sevYaqqldklrqklqekrpalvnr 80 s ++aqq+d++++klq+++p+lvnr T347703_3 1088 SMKHAQQIDEMHRKLQCLKPELVNR 1112 5689*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.70 # Mc/sec: 10315.34 // Query: T137363_1 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 11456.32 // Query: T137363_2 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.80 # Mc/sec: 9451.47 // Query: T137363_3 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.87 # Mc/sec: 8691.00 // Query: T238780_1 [L=1281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 5910.84 // Query: T238780_2 [L=1281] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1281 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.67 # Mc/sec: 5469.74 // Query: T238780_3 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-09 34.5 1.6 3.6e-08 32.4 1.6 1.8 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 1.6 2.2e-12 3.6e-08 333 487 .. 525 669 .. 462 718 .. 0.72 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 2.2e-12 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX..XXX...XXXXXXXXXXXXXXXXXXXXXXXXXXHHHH CS TLV_coat 333 ylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge....yiyaidepatR..vkRepvaltlallLgGLgiaagvgtGttglvstqqf 426 + apngt ++c+ +l + l+ + + C l + + ++ y+++ +++tR v R+ l + + vg Gt +q++ T238780_3 525 NWYAPNGTQWLCSPNLW----PWLPSGWLGCCTLGIPWAQGRWVKTMevypYLPHVVNQGTRaiVHRN-DHLPTIFMP-------SVGLGT----VIQHI 608 45578888888887777....67788888888888777776655554455677777777777332452.223333333.......223333....35667 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS------ CS TLV_coat 427 kkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFya 487 + L + + ++ +sIs ++ ++ + e +lQNR LD+L++ eGG Ca +k eCC y+ T238780_3 609 EALANFTQRALNDSLQSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIKTECCVYI 669 77777777777777899*******************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 5812.48 // Query: T103696_1 [L=3489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.37s 00:00:01.66 Elapsed: 00:00:00.72 # Mc/sec: 13863.11 // Query: T103696_2 [L=3489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-142 474.1 20.5 3e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.031 14.4 0.0 0.058 13.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.062 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.063 13.6 2.8 0.11 12.8 2.8 1.4 1 Spectrin Spectrin repeat 0.36 11.3 5.0 0.71 10.3 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.44 9.7 12.3 0.76 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.3 9.1 11.3 0.015 15.3 2.1 2.3 2 Med2 Mediator complex subunit 2 3.4 7.8 7.6 5.8 7.1 6.8 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.5e-145 3e-142 1 368 [] 3044 3379 .. 3044 3379 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.5e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103696_2 3044 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3129 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103696_2 3130 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3186 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103696_2 3187 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3279 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103696_2 3280 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3372 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103696_2 3373 QLLQNHA 3379 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.9e-05 0.058 1 72 [. 3414 3483 .. 3414 3488 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.9e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103696_2 3414 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3483 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.5e-05 0.11 76 175 .. 3068 3191 .. 3034 3198 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.5e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103696_2 3068 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3161 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103696_2 3162 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3191 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 2.8 5.5e-05 0.11 3 94 .. 3109 3198 .. 3107 3200 .. 0.92 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.5e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103696_2 3109 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3198 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 5.0 0.00035 0.71 3 95 .. 3095 3196 .. 3094 3198 .. 0.70 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00035 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103696_2 3095 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3189 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103696_2 3190 QEIWDYV 3196 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00038 0.76 30 124 .. 3097 3191 .. 3093 3198 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00038 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103696_2 3097 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3191 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.8 5.7e+03 77 96 .. 1119 1133 .. 1105 1136 .. 0.43 2 ? 15.3 2.1 7.5e-06 0.015 44 96 .. 3102 3154 .. 3095 3159 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.8 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103696_2 1119 SKKKKRKKERKKR-----KK 1133 2333332222222.....22 PP == domain 2 score: 15.3 bits; conditional E-value: 7.5e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103696_2 3102 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3154 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 6.8 0.0029 5.8 28 89 .. 3127 3186 .. 3107 3194 .. 0.71 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0029 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103696_2 3127 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3186 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 717 (0.0439715); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.60u 0.33s 00:00:01.93 Elapsed: 00:00:00.73 # Mc/sec: 13673.20 // Query: T103696_3 [L=3488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.26s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 17204.44 // Query: T111372_1 [L=1896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10234.21 // Query: T111372_2 [L=1896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 10044.69 // Query: T111372_3 [L=1896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 9862.06 // Query: T344838_1 [L=3879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.27s 00:00:01.35 Elapsed: 00:00:00.59 # Mc/sec: 18808.75 // Query: T344838_2 [L=3878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-123 411.9 15.8 1.8e-123 411.9 15.8 1.8 2 Transposase_22 L1 transposable element 4.4e-38 130.9 1.5 7.7e-38 130.1 1.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.00024 21.2 0.0 0.00053 20.1 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.098 12.8 3.8 0.22 11.6 3.8 1.5 1 KLRAQ Predicted coiled-coil domain-containing prote 0.23 11.6 2.5 0.42 10.7 2.5 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 1.5 9.3 5.4 0.76 10.2 2.5 2.0 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.3 0.27 7.2e+02 214 269 .. 2652 2708 .. 2647 2711 .. 0.87 2 ! 411.9 15.8 6.5e-127 1.8e-123 103 368 .] 3301 3550 .. 3288 3550 .. 0.98 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.27 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS.HHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk.vlnkdkilkavr 269 k +een n +++ + + +tP+ + k + + +i+++ k+ i++ r T344838_2 2652 KTLEENIGNTIQDIGMGKDFMTKTPKARATKAKIDKWVIIKLKSfCIAKETIIRLNR 2708 5689************************************98762578999998777 PP == domain 2 score: 411.9 bits; conditional E-value: 6.5e-127 ..XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE CS Transposase_22 103 nkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrli 195 kel+elktk++el+ke++ l+sr+++leervs +ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrli T344838_2 3301 LKELMELKTKARELRKECR------------------GLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLI 3375 59*****************..................89****************************************************** PP S----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE--- CS Transposase_22 196 GvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadls 288 Gv+ s+ e+++klen l++ii+enfPnl+++anv+iqei+rtP+r++ +ra++rh+i+r+tkv++k+k+l+a+rekGrvtlkGkPirlt+dls T344838_2 3376 GVPKSDGENGTKLENSLQDIIQENFPNLARQANVQIQEIQRTPQRYSLRRATPRHVIIRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTSDLS 3468 ********************************************************************************************* PP HHHHHHHHHH.HHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 289 aetlkarrew.tdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 aetl+arr +++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq+l++++ T344838_2 3469 AETLQARR-Q*GPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEvlNMERNNRYQPLQNHA 3550 ******99.6669********************************************************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.1 1.5 2.9e-41 7.7e-38 4 212 .. 2202 2425 .. 2198 2451 .. 0.92 Alignments for each domain: == domain 1 score: 130.1 bits; conditional E-value: 2.9e-41 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG..GGG-E CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr..kltaf 95 k+ +++Rpisl+++d+k+lnk++a+r++++++ l++++q+gf pg + + + + ++++++ + k++++++ D++k s++++ l+ +l+++ T344838_2 2202 KK-ENFRPISLMNIDVKILNKILANRIQQHIKILINHDQVGFIPGMQSWFNRhisiNIIHQINRTNDKNHMIISTDIEK--PSIKFNTLSC*kTLNKL 2296 33.79****************************************9999999***88888888889999**********..6********888***** PP EET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHH CS RVT_1 96 kvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqel 183 +++ + ++++++++ ++++++ +ng++ e+++ k+g++qG++lSPllfn++ + l r +r++ ++v+l+++aDD++ + ++ ++q+l T344838_2 2297 GIDGMYLKTLRAIYDKPTANIILNGQKLETFPLKTGTRQGCPLSPLLFNIVWEVLVRAIREEEetkgiqtgrEEVKLSLFADDMIGYLENpIVSAQNL 2394 **************************99*********************************99***************************6677**** PP HHHHHHHHHHTT--BEGGG-EEE.......E CS RVT_1 184 leaveewlkesglkinpeKtklvlfsg..ks 212 l+ v+++ k sg+kin +K++++l+++ ++ T344838_2 2395 LKLVRNFSKVSGYKINVQKSQAFLYTNnrQT 2425 ***********************98333432 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.0 1.9e-07 0.00053 5 92 .. 3589 3731 .. 3585 3773 .. 0.75 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.9e-07 ESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH........................EEEEEEESSSTTSSEEEEEECSEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 5 vngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla........................dadaskfgtgkgqggvavlsrfpl 74 vng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ ++d++ ++ +++++g ++++ ++ T344838_2 3589 VNG----LNAPIKRHRLANWIKSQDPSVCCIQETHLMCRDTHRLKIkgwrkiyqangk*kkagvailvsdKTDFKPTKIKRDKEGHYIMVKGSI 3678 555....56677889******************9999888777777878888888888877777777777556666666666677777777777 PP EEE................................EEEEEE-SS...-BEEEE CS xxx................................xxxxxxxxx...xxxxxx RF Exo_endo_phos 75 tsl................................vivlGDfNa...rlDril 92 ++ +++GDfN+ +lDr T344838_2 3679 QQEeltilniyapntgaprfikqvlsdlqrdlgshRLIMGDFNTplsTLDRST 3731 55578888888888888888888888888888888888******888777654 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 3.8 8.3e-05 0.22 33 89 .. 3305 3357 .. 3291 3365 .. 0.66 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 8.3e-05 KLRAQ 33 eelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 elk+k+ r ++E L r +qLe rv+++ +e++e +++ +k ++k ++++ T344838_2 3305 MELKTKA---RELRKECRGLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3357 2455555...5555699999*******************98755.665533333332 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 2.5 0.00015 0.42 23 98 .. 3296 3368 .. 3285 3378 .. 0.83 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00015 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 23 edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaele 98 + ++ ++el+el +k rel++e l+++ N+l + ++ + ++ +e++ e+k +++k+ e+ l+e+ + ++ T344838_2 3296 NRDKCLKELMELKTKARELRKECRGLRSRCNQLEERVSVMEDE---MNEMKREGKFREKRIKRNEQSLQEIWDYVK 3368 4467799******************************998875...689999999999999999999999876665 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 2.5 0.00028 0.76 26 95 .. 3293 3367 .. 3285 3369 .. 0.73 2 ? -2.1 0.0 1.9 5.2e+03 8 53 .. 3704 3749 .. 3700 3757 .. 0.71 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00028 Syntaxin-6_N 26 elledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreev 95 ++ + + ++ el+ +eLrk++r ++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + v T344838_2 3293 RITNRDKClKELMELKTKARELRKECRGLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSLQEIWDYV 3367 44444444557889****************************987332222447778888888888887776655 PP == domain 2 score: -2.1 bits; conditional E-value: 1.9 Syntaxin-6_N 8 eeVqkslnkleslyrrweelledtssstseeldetrteLrkalrsi 53 ++ q l + + +++ ++ l++ + st++++++ ++eL++al+++ T344838_2 3704 SDLQRDLGSHRLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQV 3749 5666677777777777764444444457999999999999999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 585 (0.0358764); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.62 # Mc/sec: 17894.03 // Query: T344838_3 [L=3878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-19 67.6 4.7 1.2e-18 67.1 4.7 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.1 4.7 7.1e-23 1.2e-18 1 78 [. 3215 3288 .. 3214 3290 .. 0.95 Alignments for each domain: == domain 1 score: 67.1 bits; conditional E-value: 7.1e-23 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkeke 78 +G k+ nrk++nsk +++ +P+ke+sssPat e++++++df+elr+e++ + ++y+el+e+i++k+ke+e ++k+++ T344838_3 3215 MGEKQ---NRKTGNSKKQSAFPPPKERSSSPAT--EQSWMENDFDELREEGF-R*SNYSELREDIQTKGKEVEnFEKNLK 3288 67888...*************************..****************9.7779****************9***986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.30s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 17894.03 // Query: T065961_1 [L=497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 2787.91 // Query: T065961_2 [L=497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 2633.02 // Query: T065961_3 [L=496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 2677.31 // Query: T077411_1 [L=1501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 7952.05 // Query: T077411_2 [L=1501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 7952.05 // Query: T077411_3 [L=1501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.23s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 7807.47 // Query: T000551_1 [L=1260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 7356.42 // Query: T000551_2 [L=1260] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1260 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 7209.29 // Query: T000551_3 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6926.51 // Query: T319917_1 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-10 38.8 0.0 2.4e-09 37.3 0.0 1.7 2 rve Integrase core domain 0.00021 21.4 0.0 0.00038 20.5 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.079 13.1 0.0 0.21 11.8 0.0 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.0 4.4e-13 2.4e-09 4 99 .. 877 969 .. 875 977 .. 0.89 2 ? -3.8 0.0 2.5 1.4e+04 59 81 .. 1233 1255 .. 1228 1258 .. 0.76 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 4.4e-13 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrp 99 p + wq+D+t+++ + ++ +yllv++d+f++++ a+++ e +a +vi l + +g ++ sDng +++s+ +++ + lgi++ + p T319917_1 877 PVQDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGPE-KATVVISSLPSDIIPGFGLPTSIIQSDNGLAFISQIAQAVSQALGIQWLLVLP 969 7788*********..55556**********************.9999999998888888888899************************9977665 PP == domain 2 score: -3.8 bits; conditional E-value: 2.5 rve 59 varfggvepervlsDngseytsk 81 ++ + +p r++ D ++++++ T319917_1 1233 ECQASEPKPARIHPDGLKQMKNH 1255 45555666*******99999876 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 7.1e-08 0.00038 15 100 .. 270 350 .. 261 351 .. 0.80 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 7.1e-08 EEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 15 yieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ ll t A+ + ++ + P + a+ + G+ + + + + +l+++ f g +l++p++p +llGrd+L+kl + L T319917_1 270 QVHPLLNTEATYSALHSFQRPVS----LASIIVVGMDSRAsKPLKTPQLWCQLGQHSFMG--FFLVIPTCPAPLLGRDFLTKLSASL 350 66778999999999999999988....888888888888834445555556677777777..99*******************9988 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 3.8e-05 0.21 1 38 [. 816 853 .. 816 854 .. 0.98 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 3.8e-05 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 H+l H+G++ l ll+ + ++ k +++e++s+C+ C T319917_1 816 HNLFHAGYTLLARLLESLISFPSWKSILKEITSQCSIC 853 9999********************************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 7929.36 // Query: T319917_2 [L=1469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 8081.84 // Query: T319917_3 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-08 33.1 0.0 7.5e-08 32.5 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.0 4.6e-12 7.5e-08 39 141 .. 650 755 .. 645 757 .. 0.69 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 4.6e-12 CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHTTHHHHHHHHHCHC.SSEEEEEE-S..CCSSS....C CS RNase_H 39 eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvknkelaellkelak.kkkvqlkhvk..gHaGd....p 128 + +t ++aEL+A++ aL a ++ +vniytD+kY+++ i++ h +++ tt+ + ++n++l+++l ++a +k+ + gH+ + + T319917_3 650 PSTTSQQAELIALTRALTlA--KGLCVNIYTDCKYAFH-ILH-HHAVi*AERGFLTTQGS-SIINASLIKTLLKVALlPKEAGVI--Hc*GHQKVsdpiA 742 479**************977..99**************.665.24447867787566555.699999999987766544444443..2233333333335 PP HHHHHHHHHHHHH CS RNase_H 129 kgNemaDrlAkea 141 +gN a ++Ak+a T319917_3 743 QGNAYAAKVAKKA 755 5666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 8234.70 // Query: T331175_1 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8862.61 // Query: T331175_2 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 8508.11 // Query: T331175_3 [L=1487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-11 41.5 0.0 1.4e-10 40.8 0.0 1.3 1 dUTPase dUTPase 1.6e-05 24.9 0.0 2.7e-05 24.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.8 0.0 1.8e-14 1.4e-10 13 109 .. 529 625 .. 525 644 .. 0.92 Alignments for each domain: == domain 1 score: 40.8 bits; conditional E-value: 1.8e-14 -SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEE CS dUTPase 13 sAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltael 109 sAg+++s+++ +++pg+t+++p+ +++lp g+ +l+lp S a+k ++v+ gvid dy+ e+++ l n +k++ ++gd + L++ ++ +++ T331175_3 529 SAGLEVSVPEGGMLPPGDTTMIPLSWKLTLPPGHFGLLLPLSQQAKKRVTVLAGVIDLDYQDEISLLLHNGGKEEYVWNTGDPLGCLLVLPCPVIKV 625 8*********************************************************************************999999988876555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 3.3e-09 2.7e-05 62 117 .. 400 453 .. 366 455 .. 0.86 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 3.3e-09 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++ p + sD+g+ +t+k++ +++ +gi++s+ ++p+ G++E n +lk T331175_3 400 RKI--PHSIASDQGTHFTAKEVWQWAHAHGIHWSYRVSQQPEAAGLIELWNCLLKS 453 333..999****************************************99988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.50 # Mc/sec: 8508.11 // Query: T226888_1 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3152.75 // Query: T226888_2 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3152.75 // Query: T226888_3 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3146.91 // Query: T141523_1 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 9501.26 // Query: T141523_2 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 9149.36 // Query: T141523_3 [L=1727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9687.56 // Query: T336909_1 [L=624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3500.31 // Query: T336909_2 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3427.49 // Query: T336909_3 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3494.70 // Query: T207402_1 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 6364.09 // Query: T207402_2 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 520 (0.0318901); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 6844.40 // Query: T207402_3 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 800 (0.0490617); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 6717.65 // Query: T315766_1 [L=1959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 624 (0.0382681); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.52 # Mc/sec: 10777.63 // Query: T315766_2 [L=1959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 10378.46 // Query: T315766_3 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.1 6.6 8.4 10 5.8 0.9 2.9 2 Ribosomal_S14 Ribosomal protein S14p/S29e Domain annotation for each model (and alignments): >> Ribosomal_S14 Ribosomal protein S14p/S29e # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 1.3 0.0033 54 13 27 .. 1563 1577 .. 1559 1579 .. 0.89 2 ? 5.8 0.9 0.00063 10 12 27 .. 1642 1657 .. 1641 1658 .. 0.91 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.0033 CCC---SSS--SSSE CS Ribosomal_S14 13 rirnrCrvtGrprGv 27 r+r+rCr t r rG+ T315766_3 1563 RQRQRCRETERDRGC 1577 89************7 PP == domain 2 score: 5.8 bits; conditional E-value: 0.00063 CCCC---SSS--SSSE CS Ribosomal_S14 12 trirnrCrvtGrprGv 27 +r r+rC v+ rprG+ T315766_3 1642 GRWRRRCLVCIRPRGL 1657 689************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10568.88 // Query: T260445_1 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 10283.66 // Query: T260445_2 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 10470.64 // Query: T260445_3 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-10 39.6 0.0 8.2e-10 38.8 0.0 1.3 1 HMG_box HMG (high mobility group) box 0.0022 18.4 0.0 0.0042 17.5 0.0 1.3 1 HMG_box_2 HMG-box domain Domain annotation for each model (and alignments): >> HMG_box HMG (high mobility group) box # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.8 0.0 1e-13 8.2e-10 4 48 .. 110 154 .. 108 162 .. 0.95 Alignments for each domain: == domain 1 score: 38.8 bits; conditional E-value: 1e-13 S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHCSHHHHHH CS HMG_box 4 plsafflfskeqraklkaenPelknaeiskklgekWkalseeeKk 48 p++ +++f++eqr +l+a +P+l +ei+k+l+ +W +ls+++K T260445_3 110 PTTGYMIFLNEQRSQLRATHPDLPFTEIMKMLAVQWAQLSQDKKG 154 899***************************************995 PP >> HMG_box_2 HMG-box domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.0 5.2e-07 0.0042 8 53 .. 111 155 .. 108 161 .. 0.91 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.2e-07 --HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHH CS HMG_box_2 8 rnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKek 53 + +Y++f e++ +l++ p ++ e++k + +W++ls++ K + T260445_3 111 TTGYMIFLNEQRSQLRAT-HPDLPFTEIMKMLAVQWAQLSQDKKGE 155 679***************.**********************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 8595.30 // Query: T337141_1 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 815 (0.0499816); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 4984.78 // Query: T337141_2 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 797 (0.0488777); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.72 # Mc/sec: 4565.41 // Query: T337141_3 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1169 (0.0716914); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.69 # Mc/sec: 4763.90 // Query: T278262_1 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.56 # Mc/sec: 1495.66 // Query: T278262_2 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.55 # Mc/sec: 1550.05 // Query: T278262_3 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.65 # Mc/sec: 1311.58 // Query: T115992_1 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 1403.59 // Query: T115992_2 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.66 # Mc/sec: 1361.06 // Query: T115992_3 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.67 # Mc/sec: 1340.75 // Query: T144215_1 [L=285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-10 41.4 0.0 0.022 14.7 0.0 6.0 4 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.3 0.0 0.0012 19 46 69 .. 34 57 .. 29 64 .. 0.66 2 ? 0.8 0.0 0.031 5.1e+02 49 69 .. 72 92 .. 70 96 .. 0.47 3 ! 5.3 0.0 0.0012 19 49 73 .. 161 186 .. 160 195 .. 0.60 4 ! 14.7 0.0 1.4e-06 0.022 22 69 .. 219 266 .. 198 285 .] 0.50 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0012 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfs 69 v +++++++ +++ +++++v+++ T144215_1 34 VVWNGVEWNGVEWNSMEWSGVEWN 57 556666666666666666666664 PP == domain 2 score: 0.8 bits; conditional E-value: 0.031 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfs 69 ++++++ ++ g+++++ +++ T144215_1 72 SGVEWNGMECNGMEWNGMQWN 92 444444444444444444443 PP == domain 3 score: 5.3 bits; conditional E-value: 0.0012 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfsg.klk 73 ++++++ +++sg+++ ++++sg ++k T144215_1 161 SGVEWSGLEWSGMEWDGIEWSGvEWK 186 55666666666666666666655544 PP == domain 4 score: 14.7 bits; conditional E-value: 1.4e-06 Pentapeptide_4 22 rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 + + +++ + ++++ + s +++++++++ +++sg+++++ +++ T144215_1 219 EWSGVEWSGVEWNGMEWSAVEWSGLEWNGMKWNGVEWSGMEWSGMEWN 266 333333333333444444444444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.59 # Mc/sec: 1381.93 // Query: T144215_2 [L=285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-11 41.8 0.0 0.13 12.2 0.0 7.1 8 Pentapeptide_4 Pentapeptide repeats (9 copies) 0.0002 21.2 2.4 0.44 10.4 0.1 4.0 4 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.014 1.1e+02 44 68 .. 10 34 .. 6 41 .. 0.53 2 ! 6.2 0.0 0.0013 10 48 74 .. 34 61 .. 30 67 .. 0.61 3 ? 3.1 0.0 0.012 98 46 69 .. 72 96 .. 70 106 .. 0.83 4 ? 1.3 0.0 0.041 3.4e+02 46 63 .. 136 153 .. 133 160 .. 0.73 5 ! 5.6 0.0 0.0019 15 44 70 .. 159 185 .. 141 187 .. 0.83 6 ! 12.2 0.0 1.6e-05 0.13 46 71 .. 211 237 .. 199 247 .. 0.36 7 ? 2.7 0.0 0.016 1.3e+02 46 69 .. 236 264 .. 231 267 .. 0.65 8 ? -0.6 0.0 0.16 1.3e+03 46 67 .. 256 282 .. 254 284 .. 0.64 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.014 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnf 68 s+v++++++++ + g ++++v++ T144215_2 10 SEVEWNGVEWNGLGMNGIEWSGVEW 34 3455555555555555555555554 PP == domain 2 score: 6.2 bits; conditional E-value: 0.0013 Pentapeptide_4 48 faeadlkrasFsgcdlknvnfsg.klkd 74 + +++++ + + g ++++v+++g ++++ T144215_2 34 WCGMEWNGMGWNGIQWSGVEWNGiEWNG 61 5556666666666666666666545544 PP == domain 3 score: 3.1 bits; conditional E-value: 0.012 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnf.s 69 v++++++++ +++ g++ ++ ++ + T144215_2 72 VEWNGMEWNAMEWNGMECNGMEW*N 96 799*************999988855 PP == domain 4 score: 1.3 bits; conditional E-value: 0.041 Pentapeptide_4 46 vdfaeadlkrasFsgcdl 63 v++++ d++ +++sg+d T144215_2 136 VEWRGLDWSAVEWSGMDC 153 678888888888888775 PP == domain 5 score: 5.6 bits; conditional E-value: 0.0019 Pentapeptide_4 44 sdvdfaeadlkrasFsgcdlknvnfsg 70 + v ++++d++ +++ g++ ++v++sg T144215_2 159 NGVGWNGVDWNGVEWNGMESNGVEWSG 185 567899999999999999999999975 PP == domain 6 score: 12.2 bits; conditional E-value: 1.6e-05 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.k 71 v++++++++ +++sg+++++ ++sg + T144215_2 211 VEWSGMEWSGVEWSGVEWNGMEWSGvQ 237 233333333333333333333333222 PP == domain 7 score: 2.7 bits; conditional E-value: 0.016 Pentapeptide_4 46 vdfaeadlkra.....sFsgcdlknvnfs 69 v+++++d++ + ++sg+++++v+++ T144215_2 236 VQWNGVDWNGMe*sgmEWSGVEWNGVEWN 264 56666666666666667777777777776 PP == domain 8 score: -0.6 bits; conditional E-value: 0.16 Pentapeptide_4 46 vdfaeadlkra.....sFsgcdlknvn 67 v++++++++ + ++sg+ +++ T144215_2 256 VEWNGVEWNGMq*sgvQWSGMKWNGMG 282 567777777776666677777766655 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 0.1 5.5e-05 0.44 42 78 .. 16 52 .. 10 57 .. 0.54 2 ! 7.6 0.1 0.00038 3.1 44 78 .. 38 72 .. 35 92 .. 0.61 3 ! 3.5 0.1 0.0071 58 52 75 .. 150 173 .. 134 186 .. 0.45 4 ? 2.3 0.0 0.016 1.3e+02 42 68 .. 215 241 .. 200 247 .. 0.43 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 5.5e-05 Lamprin 42 glgygglgygglgvaglgvaglgygglgypgaalggv 78 g+ + glg g+ ++g+ +g+ + g+g+ g gv T144215_2 16 GVEWNGLGMNGIEWSGVEWCGMEWNGMGWNGIQWSGV 52 4445555555555555555555555555555544443 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00038 Lamprin 44 gygglgygglgvaglgvaglgygglgypgaalggv 78 + g+g+ g+ ++g+ g+ + g+g g gv T144215_2 38 EWNGMGWNGIQWSGVEWNGIEWNGIGSNGIERSGV 72 55555555555555555555555555555444443 PP == domain 3 score: 3.5 bits; conditional E-value: 0.0071 Lamprin 52 glgvaglgvaglgygglgypgaal 75 g+ g g+g+ g+ + g T144215_2 150 GMDCYGTECNGVGWNGVDWNGVEW 173 333333333333333333333332 PP == domain 4 score: 2.3 bits; conditional E-value: 0.016 Lamprin 42 glgygglgygglgvaglgvaglgyggl 68 g+ + g+ + g+ + g+ +g+ + g+ T144215_2 215 GMEWSGVEWSGVEWNGMEWSGVQWNGV 241 233333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 1455.96 // Query: T144215_3 [L=285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-15 56.2 0.0 0.17 11.9 0.0 7.1 6 Pentapeptide_4 Pentapeptide repeats (9 copies) ------ inclusion threshold ------ 0.099 12.5 0.0 17 5.2 0.0 3.2 3 Lamprin Lamprin Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 0.082 6.7e+02 48 63 .. 7 22 .. 7 23 .. 0.76 2 ! 11.7 0.0 2.4e-05 0.19 43 74 .. 27 59 .. 25 61 .. 0.88 3 ! 11.9 0.0 2.1e-05 0.17 36 73 .. 60 97 .. 55 100 .. 0.86 4 ! 3.5 0.0 0.0085 70 52 61 .. 140 149 .. 131 185 .. 0.54 5 ! 7.3 0.0 0.00057 4.7 45 69 .. 178 202 .. 167 207 .. 0.82 6 ! 10.0 0.0 7.9e-05 0.64 21 59 .. 224 262 .. 211 273 .. 0.43 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.082 Pentapeptide_4 48 faeadlkrasFsgcdl 63 +++++++ +++sg+d+ T144215_3 7 WNGVKWSGMEWSGMDW 22 6788888888888886 PP == domain 2 score: 11.7 bits; conditional E-value: 2.4e-05 Pentapeptide_4 43 lsdvdfaeadlkrasFsgcdlknvnfsg.klkd 74 l+ v++++++++ +++ g+++++v++sg +l++ T144215_3 27 LNGVEWSGVEWSGMEWGGMEFNGVEWSGmELNG 59 78899*********************9889986 PP == domain 3 score: 11.9 bits; conditional E-value: 2.1e-05 Pentapeptide_4 36 vnFdkcllsdvdfaeadlkrasFsgcdlknvnfsgklk 73 ++ + +l+ v++++++++ +++ g++++ +++g++k T144215_3 60 MESEAMELKGVEWSGMEWNGMQWNGMEWNAMEWNGEMK 97 5566778999***********************99876 PP == domain 4 score: 3.5 bits; conditional E-value: 0.0085 Pentapeptide_4 52 dlkrasFsgc 61 d++ +++ g+ T144215_3 140 DWTGVQWNGV 149 3333333332 PP == domain 5 score: 7.3 bits; conditional E-value: 0.00057 Pentapeptide_4 45 dvdfaeadlkrasFsgcdlknvnfs 69 +++++++ r+ + g++l++v++s T144215_3 178 RMEWSGVEMYRMDWNGMELTEVEWS 202 5689999999999999999999885 PP == domain 6 score: 10.0 bits; conditional E-value: 7.9e-05 Pentapeptide_4 21 arlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 ++ + +++ +s +++ + ++v++++++++ +++ T144215_3 224 VEWSGMEWNGVECSGMEWIGMEWNEVEWSGVEWNGMEWN 262 333333333333344444444444444444444444444 PP >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.0 0.0021 17 43 69 .. 35 61 .. 26 94 .. 0.55 2 ? 1.5 0.0 0.03 2.4e+02 45 67 .. 161 183 .. 137 198 .. 0.63 3 ? 1.7 0.0 0.025 2e+02 42 70 .. 218 246 .. 211 265 .. 0.57 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0021 Lamprin 43 lgygglgygglgvaglgvaglgygglg 69 + + g+ +gg+ + g+ +g+ g+ T144215_3 35 VEWSGMEWGGMEFNGVEWSGMELNGME 61 333333333333333333333333333 PP == domain 2 score: 1.5 bits; conditional E-value: 0.03 Lamprin 45 ygglgygglgvaglgvaglgygg 67 +gg+ + g+ + g+g + + g T144215_3 161 WGGMEWTGMEWNGMGWNRMEWSG 183 33333333333333333333333 PP == domain 3 score: 1.7 bits; conditional E-value: 0.025 Lamprin 42 glgygglgygglgvaglgvaglgygglgy 70 g+ + g+ + g+ + g+ +g+ + g+ + T144215_3 218 GVEWSGVEWSGMEWNGVECSGMEWIGMEW 246 44555555555555555555555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 1358.89 // Query: T272738_1 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.60 # Mc/sec: 3642.79 // Query: T272738_2 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.002 17.6 0.1 0.0062 16.1 0.1 1.8 1 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.1 3.8e-07 0.0062 4 20 .. 406 422 .. 406 423 .. 0.91 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.8e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272738_2 406 VTVMQAHVRGWLERKRL 422 589************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 3699.68 // Query: T272738_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 3578.38 // Query: T195955_1 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 8603.84 // Query: T195955_2 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 8603.84 // Query: T195955_3 [L=2014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 487 (0.0298663); expected 326.1 (0.02) Passed bias filter: 289 (0.0177235); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.72 # Mc/sec: 8002.38 // Query: T089132_1 [L=5235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-14 52.9 0.0 4.6e-14 52.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 4.6e-07 29.5 0.0 8.1e-07 28.7 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 8.8e-06 25.4 1.0 2.3e-05 24.1 1.0 1.8 1 zf-CCHC Zinc knuckle 0.00051 20.1 0.0 0.00094 19.3 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.057 13.0 2.7 0.13 11.9 2.7 1.6 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.3 0.0 1.4e-17 4.6e-14 133 210 .. 3008 3085 .. 3007 3086 .. 0.98 Alignments for each domain: == domain 1 score: 52.3 bits; conditional E-value: 1.4e-17 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089132_1 3008 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 3085 79*************************************************************************998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.7 0.0 2.5e-10 8.1e-07 3 221 .. 3416 3582 .. 3414 3583 .. 0.74 Alignments for each domain: == domain 1 score: 28.7 bits; conditional E-value: 2.5e-10 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGG.GGG-EEET CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellr.kltafkvp 98 K++ +syR++ d+ ++n++ +++ p+ + l +++ + ++++ +Dlk a ++vpl+ + l+af+ T089132_1 3416 KPD-KSYRLV----QDLCLINQIALP---------IHPVVPNPYTL-------------LFSMPPStTHYSVMDLKHASFTVPLHP-SF*ALFAFTWT 3485 666.666664....466666666666.........55555555555.............333333337778888888888888776.45556666666 PP .........................TEEEEESB--ST-TTHHHHHHHHH.HHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm.nellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 ++ + +++ ++++lpqG+ SP f+ ++ ++ll + + l+rY D+l++s s + q+ + ++l g T089132_1 3486 DS------------------DT-HQSQQLTWAVLPQGFRGSPHYFSQTLsHDLLSFCPS---ASRLIRYFHDLLLYSPSYISSQQDTLLLLQHLFTKG 3561 44..................23.349999*************99987762567777777...59***************99999999999999999** PP --BEGGG-EEE.....ESSEEETTEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvt 221 ++++p+K ++ s++++yL ++ T089132_1 3562 YHVSPSKAQIS-----SSSITYLSII 3582 ***********.....9*****9876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 1.0 7.1e-09 2.3e-05 2 17 .. 3135 3150 .. 3134 3151 .. 0.94 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 7.1e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089132_1 3135 SCFKCQKSGHWAKECP 3150 6**************9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.0 2.9e-07 0.00094 64 100 .. 3278 3312 .. 3259 3313 .. 0.80 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 2.9e-07 EEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 64 vllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +l+++ f + s+l++p++pv+llGrd+L+kl + L T089132_1 3278 CQLGQHSFLH--SFLVIPTCPVPLLGRDILTKLSASL 3312 4566677777..*********************9988 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 2.7 3.9e-05 0.13 1 18 [. 3132 3149 .. 3132 3150 .. 0.96 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 3.9e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089132_1 3132 PSGSCFKCQKSGHWAKEC 3149 7999************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.84u 0.41s 00:00:02.25 Elapsed: 00:00:00.90 # Mc/sec: 16640.49 // Query: T089132_2 [L=5234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.36s 00:00:02.14 Elapsed: 00:00:00.90 # Mc/sec: 16637.32 // Query: T089132_3 [L=5234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-15 55.3 0.1 1.1e-14 54.6 0.1 1.3 1 RNase_H RNase H 2.7e-12 46.1 0.3 2.7e-12 46.1 0.3 1.9 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.6 0.1 1.4e-18 1.1e-14 18 142 .. 3769 3896 .. 3766 3897 .. 0.81 Alignments for each domain: == domain 1 score: 54.6 bits; conditional E-value: 1.4e-18 EEEEEE.EECTT..EEEE.EEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHC CS RNase_H 18 eggaga.vlykegarnis.apleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelak 112 +++ag+ ++++ i+ ++l++ +t ++aEL+A++ aL a ++ +vniytDS+ +++ +++ +w +++ tt+ + ++n +l+++l ++a T089132_3 3769 PAKAGYaIVSST--SIIEaTTLSPSTTSQQAELIALTRALTlA--KGLCVNIYTDSQHAFHILHHHAVMWTERGFLTTQGS-SIINSSLIKTLLKAAL 3861 568888555544..44441555599***************977..99**************9999999**99999776666.6***888877766655 PP .SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 113 .kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +k+ + h+kg + ++gN+ aD+ Akeaa T089132_3 3862 lPKEAGVLHCKGNQRAsdptAQGNTYADKTAKEAA 3896 5***********9554458889***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.1 0.3 3.3e-16 2.7e-12 464 499 .. 4130 4165 .. 4129 4173 .. 0.97 2 ? -1.3 2.0 0.073 6e+02 542 561 .] 4205 4224 .. 4198 4224 .. 0.89 Alignments for each domain: == domain 1 score: 46.1 bits; conditional E-value: 3.3e-16 HHHHHTGGGTSHHHHHTS--------HHHHHHHHHH CS TLV_coat 464 GLDlLfleeGGlCaALkEeCCFyadksgivrdsiak 499 GLDlL++e+GGlC L+EeCCFy ++sg+v d+i+k T089132_3 4130 GLDLLTAEKGGLCIFLNEECCFYLNQSGLVYDNIKK 4165 9*********************************97 PP == domain 2 score: -1.3 bits; conditional E-value: 0.073 XXXXXXXXXXXXXXXXXXXX CS TLV_coat 542 lLLiLllGPcilnrLvqlik 561 ++Ll+GPc++ + q+i+ T089132_3 4205 FFFLLLFGPCVFSLVSQFIQ 4224 56899************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.82u 0.39s 00:00:02.21 Elapsed: 00:00:00.80 # Mc/sec: 18716.98 // Query: T198078_1 [L=733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.65 # Mc/sec: 3226.14 // Query: T198078_2 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 3125.56 // Query: T198078_3 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 3272.07 // Query: T001552_1 [L=1475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1475 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.72 # Mc/sec: 5860.73 // Query: T001552_2 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.67 # Mc/sec: 6293.83 // Query: T001552_3 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 6693.43 // Query: T127984_1 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3668.32 // Query: T127984_2 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.66 # Mc/sec: 3446.00 // Query: T127984_3 [L=794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 3663.71 // Query: T124683_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 3930.34 // Query: T124683_2 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 4330.04 // Query: T124683_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 3925.94 // Query: T184061_1 [L=2413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 924 (0.0566663); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.92 # Mc/sec: 7503.46 // Query: T184061_2 [L=2412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.59 # Mc/sec: 11695.46 // Query: T184061_3 [L=2412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.72 # Mc/sec: 9583.78 // Query: T258953_1 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00063 18.6 0.0 0.001 17.9 0.0 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 6.3e-08 0.001 314 343 .. 1921 1950 .. 1894 1973 .. 0.85 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 6.3e-08 EETTTEEEEESSSSEEEESSHHHHHHHHTT CS Transposase_22 314 llyPaklsiiidGeikvfidktklrdylst 343 +ly kls+ ++Geik f dk+klr+ l + T258953_1 1921 ILYTVKLSLRSEGEIKTFSDKQKLRNVLPV 1950 89***********************98865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.64 # Mc/sec: 9632.95 // Query: T258953_2 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.65 # Mc/sec: 9484.75 // Query: T258953_3 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 7.9 5.7 0.85 9.7 1.5 2.2 2 DUF678 Protein of unknown function (DUF678) Domain annotation for each model (and alignments): >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 1.5 5.2e-05 0.85 20 65 .. 1505 1549 .. 1495 1556 .. 0.83 2 ? -2.5 0.1 0.32 5.1e+03 12 35 .. 1583 1607 .. 1580 1610 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 5.2e-05 DUF678 20 ededdctTCSlCqSkLvkvsdvskvslsklkvavgkgntlrCaACg 65 e + +c+ CS+C L +++ ++k + + ++ + + tl+C+ C T258953_3 1505 ETNAHCLRCSVCGILLWQLKLIQKQKQT-INKGAEAAVTLSCSKCS 1549 44589*****************998865.555569**********6 PP == domain 2 score: -2.5 bits; conditional E-value: 0.32 DUF678 12 krkpkttvededdc.tTCSlCqSkL 35 kr+ k+tv++ ++ T C+ kL T258953_3 1583 KRQEKATVQKGKASlRTRLRCDTKL 1607 8999*****9977646778888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.82 # Mc/sec: 7518.40 // Query: T051365_1 [L=3967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 15546.46 // Query: T051365_2 [L=3966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.33s 00:00:01.82 Elapsed: 00:00:00.78 # Mc/sec: 14546.22 // Query: T051365_3 [L=3966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.39s 00:00:01.77 Elapsed: 00:00:00.73 # Mc/sec: 15542.54 // Query: T336882_1 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.63 10.8 6.0 37 5.1 0.0 4.6 5 zf-RVT zinc-binding in reverse transcriptase Domain annotation for each model (and alignments): >> zf-RVT zinc-binding in reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.0 0.014 2.2e+02 37 66 .. 112 143 .. 103 150 .. 0.78 2 ? 0.4 0.1 0.068 1.1e+03 36 51 .. 211 226 .. 185 240 .. 0.57 3 ? 5.1 0.0 0.0023 37 37 64 .. 255 282 .. 243 290 .. 0.87 4 ? 1.0 0.0 0.043 7e+02 38 50 .. 390 402 .. 371 420 .. 0.57 5 ? -2.7 0.1 0.62 1e+04 47 66 .. 519 538 .. 510 539 .. 0.57 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.014 zf-RVT 37 Wlllrnrlltadrlarrgl..easdvCvlCdq 66 l+++ rl t+ rl +r+l ++ ++ + C+ T336882_1 112 RLVTHSRLITQLRLVTRHLvtQHAPRHPACTS 143 68999**********99995334444777765 PP == domain 2 score: 0.4 bits; conditional E-value: 0.068 zf-RVT 36 lWlllrnrlltadrla 51 l+++ rl t++rl T336882_1 211 SRLITQSRLITQSRLV 226 2344555555555554 PP == domain 3 score: 5.1 bits; conditional E-value: 0.0023 zf-RVT 37 WlllrnrlltadrlarrgleasdvCvlC 64 l+++ rl t++rl +++++ ++ C l T336882_1 255 RLVTHLRLVTQSRLVTQHVPRHPACALS 282 57889999*****************997 PP == domain 4 score: 1.0 bits; conditional E-value: 0.043 zf-RVT 38 lllrnrlltadrl 50 l++r rl t++rl T336882_1 390 LVTRSRLVTRSRL 402 3333333333333 PP == domain 5 score: -2.7 bits; conditional E-value: 0.62 zf-RVT 47 adrlarrgleasdvCvlCdq 66 ++ + + ++ C lC+q T336882_1 519 RKVWIPHSFQWLYGCDLCNQ 538 44444444444555777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.71 # Mc/sec: 3175.12 // Query: T336882_2 [L=788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.065 13.7 0.6 1.1e+02 3.7 0.0 3.5 3 Ank_3 Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 0.012 1.9e+02 2 14 .. 103 115 .. 102 118 .. 0.84 2 ? 3.7 0.0 0.0069 1.1e+02 2 14 .. 240 252 .. 239 256 .. 0.86 3 ? 2.9 0.0 0.013 2.1e+02 2 14 .. 368 380 .. 367 384 .. 0.82 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.012 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A+ s + T336882_2 103 QRTPLHPACASSP 115 69*******9876 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0069 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A++s + T336882_2 240 QRTPLHPACSSSP 252 69*******9976 PP == domain 3 score: 2.9 bits; conditional E-value: 0.013 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A+ s + T336882_2 368 QRTPLHPACASSP 380 69****9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 3415.66 // Query: T336882_3 [L=787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.75 # Mc/sec: 3001.96 // Query: T317350_1 [L=2853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.32s 00:00:01.51 Elapsed: 00:00:00.77 # Mc/sec: 10599.93 // Query: T317350_2 [L=2853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.84 # Mc/sec: 9716.60 // Query: T317350_3 [L=2852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.77 # Mc/sec: 10596.22 // Query: T183084_1 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 4625.74 // Query: T183084_2 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 2.2 28 4.9 0.0 3.3 3 AMPKBI 5'-AMP-activated protein kinase beta subunit, inter Domain annotation for each model (and alignments): >> AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.0017 28 9 61 .. 848 901 .. 844 905 .. 0.83 2 ? 4.9 0.0 0.0018 30 9 53 .. 918 961 .. 913 971 .. 0.84 3 ? 2.5 0.1 0.0097 1.6e+02 9 53 .. 986 1031 .. 982 1041 .. 0.81 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0017 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikngvlavgctt 61 Pp L+++ l++ss+s++ + +++ + P + ++HL ++ + + l +t T183084_2 848 PPSLRRLPLQRSSTSSSRQDRETHSITAPlSSTAIQHLQQQAGQGDALHHCTTF 901 99*********999999999999999999456789***9999998887766555 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0018 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikng 53 Pp L++ l++ s+s+a + d+ + p P+ ++HL ++ + + T183084_2 918 PPSLHHFPLQRFSTSTAGQGDTLHPAP-PSSTAIQHLQQQAGQGD 961 99*********8888877777777777.*********99887765 PP == domain 3 score: 2.5 bits; conditional E-value: 0.0097 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikng 53 Pp L++ l++ss+s++ + ++ + P + ++HL ++ + + T183084_2 986 PPSLHHFPLQRSSTSSSRQDRETPSITAPlSSTAIQHLQQQAGQGD 1031 99*********88888888888778888845678999988877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 5096.16 // Query: T183084_3 [L=1050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.08 12.5 0.1 0.13 11.8 0.1 1.3 1 DUF3481 C-terminal domain of neuropilin glycoprotein Domain annotation for each model (and alignments): >> DUF3481 C-terminal domain of neuropilin glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.1 8.2e-06 0.13 32 55 .. 539 563 .. 514 565 .. 0.87 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 8.2e-06 DUF3481 32 aic.Gvvlycacsqaslsdrnlsal 55 ic Gv c+c+++s+ +rn+++l T183084_3 539 YIClGVKHNCTCWRGSVNSRNVTTL 563 5899*******************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 4693.55 // Query: T012549_1 [L=4998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.41s 00:00:01.85 Elapsed: 00:00:00.85 # Mc/sec: 16821.68 // Query: T012549_2 [L=4998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.36s 00:00:02.14 Elapsed: 00:00:00.84 # Mc/sec: 17021.94 // Query: T012549_3 [L=4997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.40s 00:00:02.09 Elapsed: 00:00:00.80 # Mc/sec: 17869.46 // Query: T212557_1 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.80 # Mc/sec: 7895.89 // Query: T212557_2 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 9718.02 // Query: T212557_3 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 11279.84 // Query: T082948_1 [L=1167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 6070.16 // Query: T082948_2 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5852.15 // Query: T082948_3 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 6414.86 // Query: T202701_1 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-10 39.8 0.3 6.8e-10 39.0 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.0 0.3 4.2e-14 6.8e-10 33 96 .. 1643 1707 .. 1638 1713 .. 0.95 Alignments for each domain: == domain 1 score: 39.0 bits; conditional E-value: 4.2e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202701_1 1643 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1707 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11194.32 // Query: T202701_2 [L=2113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-37 127.6 0.2 5.8e-37 126.9 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.9 0.2 3.6e-41 5.8e-37 1 168 [. 1244 1408 .. 1244 1409 .. 0.87 Alignments for each domain: == domain 1 score: 126.9 bits; conditional E-value: 3.6e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202701_2 1244 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1337 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202701_2 1338 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1408 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.53 # Mc/sec: 11405.54 // Query: T202701_3 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 11189.02 // Query: T111735_1 [L=1879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10142.45 // Query: T111735_2 [L=1879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 9954.63 // Query: T111735_3 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 9768.43 // Query: T002456_1 [L=3700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 18901.91 // Query: T002456_2 [L=3700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 18570.30 // Query: T002456_3 [L=3700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.57 # Mc/sec: 18250.12 // Query: T051590_1 [L=1290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 6834.20 // Query: T051590_2 [L=1290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.53 # Mc/sec: 6963.15 // Query: T051590_3 [L=1290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 6963.15 // Query: T003279_1 [L=1242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 6460.27 // Query: T003279_2 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 6574.61 // Query: T003279_3 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 6698.66 // Query: T368602_1 [L=8017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 627 (0.0384521); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.38s 00:00:02.33 Elapsed: 00:00:00.68 # Mc/sec: 33728.34 // Query: T368602_2 [L=8017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 594 (0.0364283); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.44s 00:00:02.36 Elapsed: 00:00:00.68 # Mc/sec: 33728.34 // Query: T368602_3 [L=8016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.43s 00:00:02.34 Elapsed: 00:00:00.72 # Mc/sec: 31850.57 // Query: T194240_1 [L=5881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.38s 00:00:02.11 Elapsed: 00:00:00.76 # Mc/sec: 22137.55 // Query: T194240_2 [L=5881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.35s 00:00:02.08 Elapsed: 00:00:00.78 # Mc/sec: 21569.92 // Query: T194240_3 [L=5880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.37s 00:00:02.16 Elapsed: 00:00:00.78 # Mc/sec: 21566.26 // Query: T351099_1 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-21 74.1 7.5 1.5e-20 72.6 4.6 2.6 2 Transposase_1 Transposase (partial DDE domain) 0.0027 17.3 0.4 0.0051 16.4 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.06 13.5 0.0 0.13 12.4 0.0 1.5 1 BEN BEN domain 8.7 6.7 15.4 3.1 8.2 4.1 2.6 2 RCDG1 Renal cancer differentiation gene 1 protein Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.077 3.1e+02 25 38 .. 817 830 .. 813 832 .. 0.80 2 ! 72.6 4.6 3.8e-24 1.5e-20 14 79 .. 1002 1071 .. 981 1072 .. 0.86 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.077 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351099_1 817 EKLSKNAMLTIVWS 830 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 3.8e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351099_1 1002 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1071 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 1.3e-06 0.0051 55 143 .. 1042 1135 .. 976 1137 .. 0.75 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.3e-06 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351099_1 1042 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1135 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 3.2e-05 0.13 5 23 .. 1849 1867 .. 1846 1873 .. 0.86 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 3.2e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351099_1 1849 NLVCQVFPREYLANHNCGR 1867 8****************85 PP >> RCDG1 Renal cancer differentiation gene 1 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 3.5 0.021 87 9 36 .. 245 275 .. 238 294 .. 0.75 2 ? 8.2 4.1 0.00076 3.1 8 32 .. 447 471 .. 442 490 .. 0.80 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.021 RCDG1 9 PpPP....PssPssraaasssspelPvslgwr 36 P P P ++aa+++s+ lP+ lg T351099_1 245 PQ-PfawpWQKPIASAASTASACALPAKLGQE 275 33.22442789******************975 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00076 RCDG1 8 PPpPPPssPssraaasssspelPvs 32 P PP ss s +a+ +ssp++Pvs T351099_1 447 WPVPPCSSQSHPDASLASSPSVPVS 471 589999******************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 7977.15 // Query: T351099_2 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 8215.28 // Query: T351099_3 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.08 12.7 0.1 0.08 12.7 0.1 1.8 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 1.0 0.74 1.2e+04 10 30 .. 356 376 .. 354 378 .. 0.87 2 ? 12.7 0.1 4.9e-06 0.08 15 43 .. 1006 1038 .. 1002 1045 .. 0.80 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.74 Transposase_1 10 qWldkgetpkkvpkpelhqkk 30 +W ++++t+ +++pe h k T351099_3 356 SWRKRSHTERRNRQPESHSKE 376 699999*********999885 PP == domain 2 score: 12.7 bits; conditional E-value: 4.9e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351099_3 1006 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1038 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 7973.01 // Query: T182270_1 [L=1908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.79 # Mc/sec: 6909.45 // Query: T182270_2 [L=1907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.81 # Mc/sec: 6735.31 // Query: T182270_3 [L=1907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 456 (0.0279652); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.37s 00:00:01.47 Elapsed: 00:00:00.77 # Mc/sec: 7085.20 // Query: T376177_1 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.61 # Mc/sec: 1266.27 // Query: T376177_2 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0085 15.7 0.0 0.17 11.5 0.0 2.3 2 TOM6p Mitochondrial import receptor subunit TOM6 homolog Domain annotation for each model (and alignments): >> TOM6p Mitochondrial import receptor subunit TOM6 homolog # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 0.012 2e+02 6 25 .. 98 117 .. 93 123 .. 0.84 2 ! 11.5 0.0 1.1e-05 0.17 5 38 .. 125 158 .. 120 169 .. 0.80 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.012 TOM6p 6 vpvskaGsanetpeipdnvg 25 +p ++aG a +p +pd + T376177_2 98 LPDGAAGRAGSAPHLPDGAA 117 68899999999*****9765 PP == domain 2 score: 11.5 bits; conditional E-value: 1.1e-05 TOM6p 5 evpvskaGsanetpeipdnvgdwlrsvyrfaadr 38 ++p ++aG a +p +pd +g+w +v+ r T376177_2 125 HLPDGAAGRAGSAPHLPDGLGGWPGGVCPPPPGR 158 67899*******************9999655555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.62 # Mc/sec: 1245.85 // Query: T376177_3 [L=269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 1261.58 // Query: T169470_1 [L=4259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.44s 00:00:02.15 Elapsed: 00:00:00.78 # Mc/sec: 15620.87 // Query: T169470_2 [L=4259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.73 # Mc/sec: 16690.79 // Query: T169470_3 [L=4258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.87 # Mc/sec: 14001.63 // Query: T201438_1 [L=641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.52 # Mc/sec: 3526.52 // Query: T201438_2 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 3328.97 // Query: T201438_3 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 2816.82 // Query: T381565_1 [L=4890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.76 # Mc/sec: 18407.18 // Query: T381565_2 [L=4890] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4890 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.78 # Mc/sec: 17935.20 // Query: T381565_3 [L=4889] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.8 0.0 0.093 12.8 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.7e-06 0.093 18 53 .. 1359 1394 .. 1354 1398 .. 0.89 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.7e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381565_3 1359 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1394 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4889 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.52u 0.37s 00:00:01.89 Elapsed: 00:00:00.76 # Mc/sec: 18403.42 // Query: T090082_1 [L=1559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.25s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7193.60 // Query: T090082_2 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 6459.67 // Query: T090082_3 [L=1558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 6190.52 // Query: T292825_1 [L=191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 942.10 // Query: T292825_2 [L=190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 1025.58 // Query: T292825_3 [L=190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 988.29 // Query: T256190_1 [L=3074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.42s 00:00:01.70 Elapsed: 00:00:00.71 # Mc/sec: 12386.19 // Query: T256190_2 [L=3074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 13529.53 // Query: T256190_3 [L=3074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.79 # Mc/sec: 11131.89 // Query: T316531_1 [L=5484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.4 13.3 1.2e-05 25.4 13.3 1.6 2 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 2.4 6.2 10.6 3.6 5.7 10.6 1.1 1 CDC45 CDC45-like protein 3.1 8.3 42.0 6.7 7.2 42.0 1.5 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil 7.7 6.4 10.7 16 5.4 10.7 1.5 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 13.3 3.1e-09 1.2e-05 8 71 .. 2152 2211 .. 2148 2343 .. 0.67 2 ? -5.5 1.7 4 1.6e+04 84 102 .. 4680 4698 .. 4652 4732 .. 0.40 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 3.1e-09 DUF1777 8 rdrrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr 71 r+r+rdr+r+ + +++r+rdr+ +r +r+rer+++r+r+r+ er+r+r+r+r+r+++r+++ T316531_1 2152 RERERDRERETETERQRQRDRETER---QRQRERDTERERQRET-ERHRERERERERERERSQH 2211 2233333222222222233333333...3334444444443333.5555555555445444444 PP == domain 2 score: -5.5 bits; conditional E-value: 4 DUF1777 84 keskersrekekkeskkee 102 +es+++ r+++k++ ++e T316531_1 4680 TESTPAGRNTHKSHPGNSE 4698 1111111111111111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 10.6 0.00087 3.6 137 191 .. 2154 2208 .. 2136 2264 .. 0.51 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00087 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrr 191 +e + ++++e+e ++++d+e+e ++++e++ +r++++++e+++e+e+er+r+r+r T316531_1 2154 RERDRERETETERQRQRDRETERQRQRERDTERERQRETERHRERERERERERER 2208 1111111111111111111111111111111111111111111222222222222 PP >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 42.0 0.0016 6.7 35 97 .. 2151 2209 .. 2146 2211 .. 0.56 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0016 PRP38_assoc 35 rsrrsrsrrrsrtrdrsrsrersrererrsrstprdrdrardRdrrrsk.rsreRdrsrsrdrd 97 ++r+r+r+r++ ++r+r r+r++er r r+rd +r+R+r+ ++ r+reR+r+r+r+r+ T316531_1 2151 ERERERDRERETETERQRQRDRETERQRQ-----RERDTERERQRETERhRERERERERERERS 2209 34555556666656666655555555555.....555555555555553366666666666665 PP >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 10.7 0.0039 16 51 113 .. 2145 2207 .. 2143 2211 .. 0.80 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0039 Trypan_PARP 51 gaddtngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepe 113 a + n +r+ + e e ete + + + ete + + e +te e + e e + e e e e e e T316531_1 2145 NALEINERERERDRERETETERQRQRDRETERQRQRERDTERERQRETERHRERERERERERE 2207 566778889999999999999999999999999999999999998888888887777777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1686 (0.103398); expected 326.1 (0.02) Passed bias filter: 315 (0.019318); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 3.57u 0.48s 00:00:04.05 Elapsed: 00:00:01.08 # Mc/sec: 14526.66 // Query: T316531_2 [L=5484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00012 22.2 19.1 0.00012 22.2 19.1 2.4 2 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 19.1 7.6e-09 0.00012 4 64 .. 2152 2209 .. 2150 2280 .. 0.58 2 ? -7.7 8.5 1 1.6e+04 71 101 .. 4721 4789 .. 4674 4866 .. 0.52 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 7.6e-09 DUF1777 4 srdrr.drrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrr 64 +r+r+ +r+r+r+rdr+++++r+rdrdr+r + +rer+r+r+r+++r er+r+r+r+r+ T316531_2 2152 EREREtERERQRQRDRDRETERQRDRDRER---ETQRERDRERQRDTER-EREREREREREA 2209 344432222223233222222333333333...2334444444443333.333333333332 PP == domain 2 score: -7.7 bits; conditional E-value: 1 DUF1777 71 r...........................................kesekrsesksskeskersrekekkeskke 101 + +++++++ ++ r+ k+++++++e T316531_2 4721 PagrntwkshtgnsehphlqvgtcgnhtqetvrihtcwrehaeiT-----PRKQEESTPAGRNTWKSHNRKQQE 4789 011111222222223333344555555555555555544222220.....222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 722 (0.0442782); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.91u 0.44s 00:00:03.35 Elapsed: 00:00:00.92 # Mc/sec: 17053.03 // Query: T316531_3 [L=5483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1453 (0.0891083); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 95 (0.00582608); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.38u 0.47s 00:00:03.84 Elapsed: 00:00:01.20 # Mc/sec: 13071.61 // Query: T233600_1 [L=2782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 10336.14 // Query: T233600_2 [L=2782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.76 # Mc/sec: 10472.14 // Query: T233600_3 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.63 # Mc/sec: 12628.52 // Query: T275909_1 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 13.4 0.0 0.034 13.4 0.0 1.8 2 DUF1510 Protein of unknown function (DUF1510) 0.034 14.3 0.0 0.14 12.4 0.0 2.0 1 DUF912 Nucleopolyhedrovirus protein of unknown function 0.047 13.4 0.2 0.1 12.4 0.2 1.5 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.25 11.1 5.6 0.51 10.1 5.6 1.4 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 1.0 1.2 4.7e+03 90 90 .. 420 420 .. 352 493 .. 0.53 2 ? 13.4 0.0 8.4e-06 0.034 5 58 .. 610 663 .. 605 668 .. 0.65 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 1.2 DUF1510 90 e 90 T275909_1 420 H 420 0 PP == domain 2 score: 13.4 bits; conditional E-value: 8.4e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275909_1 610 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 663 334444555566667777777777788888888888887777777666665554 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 3.3e-05 0.14 39 87 .. 593 639 .. 571 655 .. 0.45 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 3.3e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275909_1 593 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 639 111222222222222223344444444444444444444433222..11 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.2 2.5e-05 0.1 86 139 .. 591 642 .. 566 650 .. 0.52 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.5e-05 LRRC37AB_C 86 nesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275909_1 591 RHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 642 333333344444455556666667777777777666666555555554444..4 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 5.6 0.00013 0.51 26 58 .. 623 655 .. 615 663 .. 0.68 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00013 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssna 58 +++ti+++++iii+ ++++ s s+ s sss++ T275909_1 623 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSS 655 678999999999888888876554444333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1211 (0.0742671); expected 326.1 (0.02) Passed bias filter: 327 (0.020054); expected 326.1 (0.02) Passed Vit filter: 153 (0.00938305); expected 16.3 (0.001) Passed Fwd filter: 49 (0.00300503); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.77u 0.44s 00:00:03.21 Elapsed: 00:00:00.90 # Mc/sec: 7231.54 // Query: T275909_2 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.078 13.2 11.5 0.19 11.9 11.5 1.5 1 DUF3446 Domain of unknown function (DUF3446) 3.2 7.2 12.4 5.2 6.5 12.4 1.2 1 SR-25 Nuclear RNA-splicing-associated protein 7.7 5.7 17.9 12 5.1 17.9 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 11.5 3.5e-05 0.19 20 68 .. 608 654 .. 599 661 .. 0.49 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 3.5e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssel 68 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ T275909_2 608 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHR 654 233444..23333566666666666666666555555444433333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 12.4 0.00097 5.2 65 98 .. 621 653 .. 618 660 .. 0.31 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00097 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275909_2 621 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 653 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 17.9 0.0022 12 177 204 .. 632 659 .. 615 663 .. 0.52 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0022 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275909_2 632 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 659 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1457 (0.0893536); expected 326.1 (0.02) Passed bias filter: 566 (0.0347111); expected 326.1 (0.02) Passed Vit filter: 422 (0.02588); expected 16.3 (0.001) Passed Fwd filter: 62 (0.00380228); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.98u 0.43s 00:00:04.41 Elapsed: 00:00:01.14 # Mc/sec: 5659.47 // Query: T275909_3 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1349 (0.0827303); expected 326.1 (0.02) Passed bias filter: 581 (0.0356311); expected 326.1 (0.02) Passed Vit filter: 388 (0.0237949); expected 16.3 (0.001) Passed Fwd filter: 111 (0.00680731); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.93u 0.64s 00:00:06.56 Elapsed: 00:00:01.51 # Mc/sec: 4308.30 // Query: T172397_1 [L=7690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0065 15.3 1.5 0.01 14.7 1.5 1.2 1 DUF913 Domain of Unknown Function (DUF913) ------ inclusion threshold ------ 2.1 8.4 10.9 0.022 14.8 2.2 1.9 2 CPSF100_C Cleavage and polyadenylation factor 2 C-termin 4.9 7.0 6.7 9.2 6.1 6.7 1.3 1 RP-C_C Replication protein C C-terminal region 5.2 6.3 14.4 1.9 7.8 11.2 1.7 2 SpoIIP Stage II sporulation protein P (SpoIIP) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 1.5 2.6e-06 0.01 231 319 .. 741 871 .. 739 893 .. 0.57 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 2.6e-06 DUF913 231 sLktaiikavikmlarvrelgkekaakllved...........................................assasskseasssssssetkeeeks 287 sL++a ++ + ++++ g+ a +l+ + ++++++k+e++++++++++k+++++ T172397_1 741 SLRPAWTTKQDPISKKIKTAGCGVA-RLWSQVvgrlrwqgclslggh*gcsep*srpctsgyctpacatdldlvfKKKRKKKKEEEEKEKEKKKKKKTEE 839 5666666666666677777777777.77777777888888888888888888888888888888888888877763333333333333333333333323 PP DUF913 288 sededvemedaeaetesesdeeeeseeekekn 319 +e+e++e+e++++++e++++ ++e+eeeke++ T172397_1 840 EEEEEEEEEEERRKKEKKKERKKEEEEEKEER 871 33333333333233333333333333334433 PP >> CPSF100_C Cleavage and polyadenylation factor 2 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 2.2 5.4e-06 0.022 34 80 .. 825 871 .. 761 894 .. 0.61 2 ? -2.7 1.6 1.3 5.1e+03 63 80 .. 6965 6981 .. 6939 6997 .. 0.43 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 5.4e-06 CPSF100_C 34 aeaeeeekeeeeeeeeeeeeeeeankkqklaeksekeaseeeseekk 80 +e+e+e+k+++++eeeeeeeeee+++++k+++k+e++++eee++e++ T172397_1 825 EEKEKEKKKKKKTEEEEEEEEEEEEERRKKEKKKERKKEEEEEKEER 871 22222222222222222222222223333323333333333333333 PP == domain 2 score: -2.7 bits; conditional E-value: 1.3 CPSF100_C 63 laeksekeaseeeseekk 80 + +k++k+++++++ee+k T172397_1 6965 K-KKKKKKKKKKKEEESK 6981 1.1111111111111111 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 6.7 0.0023 9.2 43 109 .. 814 891 .. 805 907 .. 0.50 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0023 RP-C_C 43 leaklkaenssanesqnerhiqnsnpesssese.pasekereekeaaaasaeaepsek..........ksvplglvlk 109 +++k k+++++ ++++++++++++++e+++e+e ++ ++++e+k+++++++e+e++e+ ++ +lg v T172397_1 814 FKKKRKKKKEEEEKEKEKKKKKKTEEEEEEEEEeEEERRKKEKKKERKKEEEEEKEERtglrfflelfETATLGAVFT 891 444445555444444555555555554333332133333444444444444444333366777777776666666655 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 11.2 0.00046 1.9 17 65 .. 819 868 .. 803 904 .. 0.48 2 ? -1.9 0.0 0.42 1.7e+03 32 47 .. 6966 6981 .. 6946 7020 .. 0.62 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00046 SpoIIP 17 epteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.ds 65 ++ +e++++e+ek++k+k+eeeeee+eeeeee kke+k+e k++ee ++ T172397_1 819 KKKKEEEEKEKEKKKKKKTEEEEEEEEEEEEERRKKEKKKERKKEEEeEK 868 22222222222222222222222222222222222222222222222122 PP == domain 2 score: -1.9 bits; conditional E-value: 0.42 SpoIIP 32 kekeeeeeeekeeeee 47 k+k+++++++keee++ T172397_1 6966 KKKKKKKKKKKEEESK 6981 1111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1819 (0.111554); expected 326.1 (0.02) Passed bias filter: 829 (0.0508402); expected 326.1 (0.02) Passed Vit filter: 377 (0.0231203); expected 16.3 (0.001) Passed Fwd filter: 102 (0.00625537); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 9.44u 0.67s 00:00:10.11 Elapsed: 00:00:01.78 # Mc/sec: 12359.43 // Query: T172397_2 [L=7690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.14u 0.46s 00:00:03.60 Elapsed: 00:00:00.97 # Mc/sec: 22680.19 // Query: T172397_3 [L=7690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.42s 00:00:02.79 Elapsed: 00:00:00.90 # Mc/sec: 24444.20 // Query: T194263_1 [L=4912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.33s 00:00:01.92 Elapsed: 00:00:00.72 # Mc/sec: 19517.22 // Query: T194263_2 [L=4912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:00.90 # Mc/sec: 15613.77 // Query: T194263_3 [L=4912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.39s 00:00:02.00 Elapsed: 00:00:01.03 # Mc/sec: 13643.10 // Query: T137397_1 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.80 # Mc/sec: 8235.61 // Query: T137397_2 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 10980.82 // Query: T137397_3 [L=2302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 9544.39 // Query: T137362_1 [L=2129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 9370.32 // Query: T137362_2 [L=2128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.76 # Mc/sec: 8010.32 // Query: T137362_3 [L=2128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.61 # Mc/sec: 9980.08 // Query: T119930_1 [L=305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 1710.89 // Query: T119930_2 [L=304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.45 # Mc/sec: 1932.65 // Query: T119930_3 [L=304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 1610.54 // Query: T089220_1 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-20 73.3 0.1 2.6e-20 72.7 0.1 1.2 1 Gag_p30 Gag P30 core shell protein 1.2e-13 50.7 0.0 2.2e-13 49.9 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 8.7e-05 22.6 0.0 0.00017 21.6 0.0 1.5 1 rve Integrase core domain ------ inclusion threshold ------ 0.057 13.1 0.0 0.12 12.1 0.0 1.5 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.7 0.1 6.4e-24 2.6e-20 90 193 .. 658 761 .. 637 779 .. 0.87 Alignments for each domain: == domain 1 score: 72.7 bits; conditional E-value: 6.4e-24 Gag_p30 90 trpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaafle.rlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrle 188 t +wd + + ++l+ yr+ ll gl+ +++ tn+ kv ev+qgk espa f rl eay +yt +dpe+pe++ + ++++ qsa d+r+klq+ T089220_1 658 TDLQWDPNERQVMQRLNRYRESLLEGLKRGSQKATNINKVSEVIQGKGESPAQF-Y*RLCEAYLMYTCFDPESPENQHMINMALVSQSAEDLRRKLQKQA 756 5568999999999**************************************998.888***************************************987 PP Gag_p30 189 glqea 193 ++ ++ T089220_1 757 EFAGM 761 76554 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 0.0 5.5e-17 2.2e-13 2 80 .. 336 409 .. 333 422 .. 0.92 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 5.5e-17 XX---HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHH CS Gag_MA 2 qtvstPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvp 80 q++ tPL +l++fk + + +v + +kl+tlC+ +Wp+l+vgWP eG+ ++++kv +kv + GhpDqv+ T089220_1 336 QSKPTPLGTMLKNFK--KGFNGDYGVTMTPGKLRTLCEIDWPALEVGWPSEGSLVRSLVSKVWHKVTGK---GHPDQVS 409 78889*********9..5677899******************************************966...*****96 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.0 4.2e-08 0.00017 64 117 .. 1575 1627 .. 1563 1629 .. 0.87 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 4.2e-08 rve 64 gvepervlsDngseytskafreflael.girvsftrpgrpqdnGkvErfnrtlkd 117 g p+ + sDng++++ ++ + a gi+++++ ++rpq+ Gkv r+nrt+k+ T089220_1 1575 GL-PLPIGSDNGPAFV-ADLVQKTAMV*GITWKLHTTYRPQSSGKVDRMNRTIKN 1627 44.78899********.567777778899************************98 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 2.8e-05 0.12 2 30 .. 1601 1629 .. 1601 1643 .. 0.89 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 2.8e-05 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdel 30 gi++++ ++Pq g+v ++n+t+++ l T089220_1 1601 GITWKLHTTYRPQSSGKVDRMNRTIKNSL 1629 79************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.60 # Mc/sec: 12449.38 // Query: T089220_2 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-13 48.3 0.0 1.3e-12 47.6 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0024 17.9 0.0 0.0044 17.1 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.6 0.0 1.6e-16 1.3e-12 71 222 .] 1141 1268 .. 1096 1268 .. 0.89 Alignments for each domain: == domain 1 score: 47.6 bits; conditional E-value: 1.6e-16 EEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB..--ST-TTHHHHHHHHHHHHHTT-T......TEEEC CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkg..lpqGsvlSPllfnlfmnellrelrkrakgvtllrY 166 + lDlk+aF+s++l+ +++kl+af+ +++ s+ ++++ l+qG+++S ++f ++ + l+++ +r g++ll+Y T089220_2 1141 STCLDLKDAFFSIRLAPESQKLFAFQWEDP---------------------GSGVTTQYTWt*LRQGFKNSLTIFGEALAQDLQKFPSRDLGCVLLQY 1217 578*************************66.....................5688888888566*************************9******** PP TTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 167 aDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +DD l+ + + + + +++ +l+++g+k++++K +++ +++v yLG+t+ T089220_2 1218 IDDPLLGHPTAFGCAKGTDTLLWHLEDCGYKVSKKKAQIC-----KQQVCYLGFTI 1268 ****************************************.....9********97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 5.4e-07 0.0044 5 57 .. 1517 1571 .. 1515 1583 .. 0.79 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 5.4e-07 EEEEEEEEECTT.TEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.T CS RNase_H 5 vvYtDGsclgns.geggaga.vlykegarnisapleeaqtnnraELsAvieaLk.a 57 +Y D s++ n+ ge+++++ + + + + +++l++ +++++aEL+A+i+aL+ + T089220_2 1517 ELYMDRSSFVNP*GERCVAYaAVTLD-TVTEAKSLPQGTSAQKAELIALIQALElS 1571 589********888887777444444.4588899999****************954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 12873.74 // Query: T089220_3 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-11 41.5 5.1 2.5e-08 33.6 0.6 2.1 2 Gag_p30 Gag P30 core shell protein 1.1e-05 25.5 0.0 2e-05 24.7 0.0 1.3 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.13 12.8 0.1 0.23 12.1 0.1 1.3 1 Asp_protease_2 Aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.4 5.2e-05 0.28 2 20 .. 550 568 .. 549 569 .. 0.92 2 ! 33.6 0.6 4.6e-12 2.5e-08 3 43 .. 569 609 .. 567 617 .. 0.94 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 5.2e-05 Gag_p30 2 ywpfsasdlynwktnnpsf 20 y pf+++dl+nwk+n ps T089220_3 550 YQPFTSADLFNWKNNTPSH 568 89***************85 PP == domain 2 score: 33.6 bits; conditional E-value: 4.6e-12 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwd 43 pf+++dl nwk+n ps++++pq++ l+ +i+ th+ptw T089220_3 569 QPFTSADLLNWKNNTPSYTKKPQAMIDLLPTIIQTHNPTWA 609 69**************************************6 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 3.6e-09 2e-05 12 88 .. 893 964 .. 891 969 .. 0.87 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.6e-09 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnll 88 ggk ie+l+DtGA+++v++ P + k++ + G++g ++++ + ++ +++ ++l +pe+p+ ll T089220_3 893 GGKDIEFLVDTGAEHSVVTTPLTPLS----KKTIDIIGATGVLaKQAFCLPWTCTVAGHEVIY--EFLYMPECPLSLL 964 6899**********************....9999999**999967777777777777777777..9********9976 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 4.1e-05 0.23 6 26 .. 893 913 .. 891 929 .. 0.91 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 4.1e-05 Asp_protease_2 6 nGkpvrfllDTGasttlispe 26 +Gk+++fl+DTGa ++++++ T089220_3 893 GGKDIEFLVDTGAEHSVVTTP 913 699**************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.50 # Mc/sec: 14933.53 // Query: T125901_1 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5875.30 // Query: T125901_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5660.36 // Query: T125901_3 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5561.05 // Query: T062266_1 [L=460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.53 # Mc/sec: 2482.98 // Query: T062266_2 [L=460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.54 # Mc/sec: 2437.00 // Query: T062266_3 [L=459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 2431.71 // Query: T189144_1 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 8925.79 // Query: T189144_2 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 9395.57 // Query: T189144_3 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 10500.93 // Query: T084402_1 [L=1528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-28 97.2 0.0 8.6e-28 95.9 0.0 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.9 0.0 5.3e-32 8.6e-28 10 73 .. 187 250 .. 185 256 .. 0.96 Alignments for each domain: == domain 1 score: 95.9 bits; conditional E-value: 5.3e-32 Transposase_1 10 qWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqek 73 qWld e+pk++pkp+lh+++vm+tVwWsa+gli+y+fl+pge +t e+Y+qq+d +++klq++ T084402_1 187 QWLDHREAPKHFPKPNLHRENVMVTVWWSAAGLIHYSFLNPGEIVTFEKYSQQIDAMHRKLQCQ 250 9*************************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 8571.27 // Query: T084402_2 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 8565.66 // Query: T084402_3 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 8736.97 // Query: T284132_1 [L=1006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.068 13.6 0.1 0.17 12.3 0.1 1.6 1 TAF8_C Transcription factor TFIID complex subunit 8 C-term Domain annotation for each model (and alignments): >> TAF8_C Transcription factor TFIID complex subunit 8 C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 1e-05 0.17 5 23 .. 9 27 .. 7 31 .. 0.83 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1e-05 TAF8_C 5 hlPpfPppHTYkrTpvyne 23 hlP +P pHT++ v+++ T284132_1 9 HLPRLPGPHTWRGRRVEMP 27 9**********98777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 5873.46 // Query: T284132_2 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5750.27 // Query: T284132_3 [L=1005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 5134.17 // Query: T073552_1 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5820.49 // Query: T073552_2 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 5519.43 // Query: T073552_3 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5820.49 // Query: T021299_1 [L=734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4199.70 // Query: T021299_2 [L=734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 3333.09 // Query: T021299_3 [L=733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.69 # Mc/sec: 3039.11 // Query: T090327_1 [L=3484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-14 51.7 5.0 1.6e-13 50.4 5.0 1.7 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.4 5.0 1e-17 1.6e-13 13 56 .. 2000 2042 .. 2000 2051 .. 0.93 Alignments for each domain: == domain 1 score: 50.4 bits; conditional E-value: 1e-17 Colipase-like 13 lngyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 +ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rk T090327_1 2000 PNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKVS 2042 79******************9.99******************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 919 (0.0563596); expected 326.1 (0.02) Passed bias filter: 271 (0.0166196); expected 326.1 (0.02) Passed Vit filter: 123 (0.00754324); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.77u 0.49s 00:00:03.26 Elapsed: 00:00:00.98 # Mc/sec: 10170.54 // Query: T090327_2 [L=3483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-11 44.0 0.3 4e-11 42.8 0.3 1.7 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.8 0.3 2.5e-15 4e-11 54 89 .] 2068 2103 .. 2063 2103 .. 0.96 Alignments for each domain: == domain 1 score: 42.8 bits; conditional E-value: 2.5e-15 Colipase-like 54 kpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 +pn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090327_2 2068 QPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 2103 689*******************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 966 (0.059242); expected 326.1 (0.02) Passed bias filter: 349 (0.0214032); expected 326.1 (0.02) Passed Vit filter: 144 (0.00883111); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.11u 0.44s 00:00:03.55 Elapsed: 00:00:01.05 # Mc/sec: 9489.78 // Query: T090327_3 [L=3483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-10 40.8 3.6 4.6e-10 39.4 3.6 1.7 1 Colipase-like Colipase-like ------ inclusion threshold ------ 1.9 7.0 62.6 4.7 5.7 62.6 1.5 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 3.6 5.6e-14 4.6e-10 15 56 .. 1919 1960 .. 1916 1972 .. 0.92 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 5.6e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090327_3 1919 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKVR 1960 567************************************975 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 62.6 0.00058 4.7 95 256 .. 900 1044 .. 886 1058 .. 0.22 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00058 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS MIP-T3 95 tkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkk 192 t+r + + + ++e e++++k+ e+ + +e+e e+e++r e+++e++++rer+++++re +++k+ ++++++ T090327_3 900 TERDRDRERQRQRETETGRQKE-TERGRGREREGETERDR-----------------------RREGETERQRQRERQRQRGRERQRQKE-TETERDR 972 1222222222222222222221.11222222222222222.......................222222222222222222221111111.1111111 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 193 dkekekkkekssksesgkeeerskdeerekead........kgkdretnrateeeeesrkssekkrrsskse 256 ++e+e ++ + +++e++ e++r+ ++er++++d ++ dr+++r+ ++e e+ +++e++r+ + + T090327_3 973 ERETETERGRGREREGETERDRDGERERQRDRDrgrdrdreAERDRDRKRQRQKETERGRQRERQRDRERQR 1044 111111111111111111111111111111111000000001111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 817 (0.0501043); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 121 (0.00742058); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.66u 0.45s 00:00:03.11 Elapsed: 00:00:00.94 # Mc/sec: 10600.29 // Query: T353306_1 [L=1352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 6139.43 // Query: T353306_2 [L=1352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.71 # Mc/sec: 5447.67 // Query: T353306_3 [L=1351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 5768.63 // Query: T379112_1 [L=4497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:00.85 # Mc/sec: 15135.47 // Query: T379112_2 [L=4497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.35s 00:00:01.79 Elapsed: 00:00:00.79 # Mc/sec: 16285.00 // Query: T379112_3 [L=4496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.40s 00:00:01.70 Elapsed: 00:00:00.64 # Mc/sec: 20097.33 // Query: T198724_1 [L=704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0033 16.9 0.3 0.0057 16.1 0.3 1.3 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.3 3.5e-07 0.0057 3 18 .. 598 613 .. 598 613 .. 0.95 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.5e-07 DUF1725 3 agKWMELEnIILSEis 18 a+KWM E+++LSEi+ T198724_1 598 ATKWMNFEDTMLSEIK 613 89************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 3949.07 // Query: T198724_2 [L=704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 3356.71 // Query: T198724_3 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 3094.10 // Query: T227243_1 [L=4222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.77 # Mc/sec: 15686.27 // Query: T227243_2 [L=4221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.37s 00:00:02.24 Elapsed: 00:00:00.93 # Mc/sec: 12984.48 // Query: T227243_3 [L=4221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0028 18.1 1.6 0.0061 17.0 1.6 1.6 1 DUF1117 Protein of unknown function (DUF1117) Domain annotation for each model (and alignments): >> DUF1117 Protein of unknown function (DUF1117) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 1.6 3.8e-07 0.0061 2 29 .. 3492 3519 .. 3491 3594 .. 0.80 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 3.8e-07 DUF1117 2 GltiWRLPGGGfAvGRfsggrregerel 29 Glt+WR+PGGG vG g+r + r l T227243_3 3492 GLTVWRVPGGGAGVGQRDGARGKTSRSL 3519 9********************9999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1691 (0.103704); expected 326.1 (0.02) Passed bias filter: 969 (0.059426); expected 326.1 (0.02) Passed Vit filter: 849 (0.0520667); expected 16.3 (0.001) Passed Fwd filter: 85 (0.00521281); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 11.31u 0.87s 00:00:12.18 Elapsed: 00:00:02.14 # Mc/sec: 5642.79 // Query: T238785_1 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 4876.61 // Query: T238785_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 4661.47 // Query: T238785_3 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-09 34.5 2.1 4e-08 32.3 2.1 1.9 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.3 2.1 2.4e-12 4e-08 333 487 .. 352 496 .. 290 545 .. 0.72 Alignments for each domain: == domain 1 score: 32.3 bits; conditional E-value: 2.4e-12 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX..XXX...XXXXXXXXXXXXXXXXXXXXXXXXXXHHHH CS TLV_coat 333 ylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge....yiyaidepatR..vkRepvaltlallLgGLgiaagvgtGttglvstqqf 426 + apngt ++c+ +l + l+ + + C l + + ++ y+++ +++tR v R+ l + + vg Gt +q++ T238785_3 352 NWYAPNGTQWLCSPNLW----PWLPSGWLGCCTLGIPWAQGRWVKTMevypYLPHVVNQGTRaiVHRN-DHLPTIFMP-------SVGLGT----VIQHI 435 45578888888887777....67788888888888777776655554455677777777777332452.223333333.......223333....35667 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS------ CS TLV_coat 427 kkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFya 487 + L + + ++ +sIs ++ ++ + e +lQNR LD+L++ eGG Ca +k eCC y+ T238785_3 436 EALANFTQRALNDSLQSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIKTECCVYI 496 77777777777777899*******************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 4460.48 // Query: T125938_1 [L=2310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 9577.56 // Query: T125938_2 [L=2310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.74 # Mc/sec: 8930.43 // Query: T125938_3 [L=2309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 9714.20 // Query: T277968_1 [L=4058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 789 (0.0483871); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.38s 00:00:02.02 Elapsed: 00:00:00.79 # Mc/sec: 14695.25 // Query: T277968_2 [L=4058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 800 (0.0490617); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.35s 00:00:02.02 Elapsed: 00:00:00.80 # Mc/sec: 14511.56 // Query: T277968_3 [L=4057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.85 # Mc/sec: 13654.57 // Query: T368111_1 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 5704.05 // Query: T368111_2 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5980.06 // Query: T368111_3 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 6078.09 // Query: T369922_1 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 7614.21 // Query: T369922_2 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.84 # Mc/sec: 5891.95 // Query: T369922_3 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 7733.18 // Query: T234700_1 [L=3389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.7 10.9 2 8.4 2.1 2.9 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 2.1 0.00012 2 17 30 .. 404 417 .. 402 418 .. 0.96 2 ? 4.2 1.7 0.0025 40 16 29 .. 1278 1291 .. 1273 1292 .. 0.90 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00012 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T234700_1 404 CSGAISAHCNLCLP 417 *************9 PP == domain 2 score: 4.2 bits; conditional E-value: 0.0025 Toxin_18 16 cCSGAcSaaFgyCL 29 CSG Sa ++CL T234700_1 1278 VCSGVISAHCNFCL 1291 6************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.75 # Mc/sec: 12927.14 // Query: T234700_2 [L=3389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.75 # Mc/sec: 12927.14 // Query: T234700_3 [L=3389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.30s 00:00:01.67 Elapsed: 00:00:00.69 # Mc/sec: 14051.24 // Query: T141054_1 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.64 # Mc/sec: 1948.94 // Query: T141054_2 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2598.59 // Query: T141054_3 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.66 # Mc/sec: 1889.88 // Query: T155650_1 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-18 63.9 0.0 1.2e-17 63.5 0.0 1.0 1 PhoPQ_related PhoPQ-activated pathogenicity-related protein Domain annotation for each model (and alignments): >> PhoPQ_related PhoPQ-activated pathogenicity-related protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.5 0.0 7.4e-22 1.2e-17 218 336 .. 167 287 .. 162 301 .. 0.89 Alignments for each domain: == domain 1 score: 63.5 bits; conditional E-value: 7.4e-22 PhoPQ_related 218 kaYGewslaledYvaegidellktpefkkLlkivDplsYlerl.tipkyiinasgDdffvpdstkfyfekLkgekalrivPnssHglsnkevvesl 312 + +G s+ ++ +++ + +tp+f++ ++ vDp+ +++++ t p +++ +sgD+ff d t ++++L+g+k+lr +P ++H + +e+ + l T155650_1 167 RCFGGQSACVRALHTLNVTGNKDTPRFQEKIEHVDPFYHMTHYqTKPELLVFGSGDEFFSTDGTMNFYDQLPGRKYLRAIPSAGHAIDFHETNTYL 262 5689999999999999***************************889*****************************************996666665 PP PhoPQ_related 313 .vafvklvaagkelPeleweieese 336 + f+ ++++++e P+++w+ +e + T155650_1 263 eIRFFLYLLKEQEFPSISWTKTEAT 287 37899999***********977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.57 # Mc/sec: 1820.08 // Query: T155650_2 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 1852.01 // Query: T155650_3 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.59 # Mc/sec: 1784.38 // Query: T316784_1 [L=2089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 8186.68 // Query: T316784_2 [L=2089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.72 # Mc/sec: 8300.38 // Query: T316784_3 [L=2088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 8296.41 // Query: T181584_1 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00019 21.8 19.9 0.00019 21.8 19.9 1.8 2 TonB_N TonB N-terminal region ------ inclusion threshold ------ 0.17 11.7 13.1 0.38 10.6 13.1 1.5 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> TonB_N TonB N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 19.9 2.3e-08 0.00019 35 83 .. 51 93 .. 43 123 .. 0.50 2 ? -3.9 0.6 2 1.6e+04 31 47 .. 1356 1372 .. 1348 1377 .. 0.57 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 2.3e-08 X.XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS TonB_N 35 P.apePevepePePePevvPePpkeapvaiekPkPepkpKPKPKpekKee 83 ++eP p+P+P+P++ P+P +kPkP+pkpKPKPK + K + T181584_1 51 MgQDEPLHLPQPQPQPQPKPKPK-------PKPKPKPKPKPKPKAKPKPN 93 23556666566666666555554.......22333333333333333311 PP == domain 2 score: -3.9 bits; conditional E-value: 2 XXXXXXXXXXX..XXXX CS TonB_N 31 aepePapePevepePeP 47 +p+ a P+v p+P P T181584_1 1356 TAPTSAAGPKVTPTPLP 1372 34444555666555444 PP >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 13.1 4.7e-05 0.38 81 119 .. 55 93 .. 44 105 .. 0.49 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 4.7e-05 Trypan_PARP 81 epeeegeeetepeeeeepepepetepepepepepepepe 119 ep + ++++++p+++++p+p+p+++p+p+p+p+ +p+p+ T181584_1 55 EPLHLPQPQPQPQPKPKPKPKPKPKPKPKPKPKAKPKPN 93 333333444444444434444444444444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 7301.93 // Query: T181584_2 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 10.8 18.1 0.25 10.2 18.1 1.1 1 Corona_nucleoca Coronavirus nucleocapsid protein 3.9 7.4 25.7 7.8 6.4 25.7 1.4 1 Transformer Fruit fly transformer protein Domain annotation for each model (and alignments): >> Corona_nucleoca Coronavirus nucleocapsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 18.1 3.1e-05 0.25 166 202 .. 61 97 .. 53 106 .. 0.80 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 3.1e-05 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Corona_nucleoca 166 grsraasrsgsrsrsrsrnrarsssrgrspastaknd 202 rsr+ srs srs+s+srnr+rs+sr r+ ++t + T181584_2 61 SRSRSRSRSRSRSQSQSRNRNRSQSRRRNRSQTEAKA 97 58888999999999999***********999876543 PP >> Transformer Fruit fly transformer protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 25.7 0.00096 7.8 41 95 .. 49 100 .. 27 118 .. 0.45 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00096 Transformer 41 krktqstrpttshrerrtrsrsrsqsaeresrqrrrr..srsrsrrrsdsrskssss 95 + ++ r t r+rsrsrs+s +r++ q r+r s+sr r+rs++ k+++ T181584_2 49 RAWAKMSRST-----CRSRSRSRSRSRSRSQSQSRNRnrSQSRRRNRSQTEAKAETE 100 2222223322.....244444444444444444444400444444444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 941 (0.0577088); expected 326.1 (0.02) Passed bias filter: 414 (0.0253894); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.57 # Mc/sec: 7931.40 // Query: T181584_3 [L=1607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0031 17.4 15.0 0.0051 16.7 15.0 1.2 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) ------ inclusion threshold ------ 1 7.9 5.6 1.4 7.5 5.6 1.1 1 Tim54 Inner membrane protein import complex subunit Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 15.0 6.2e-07 0.0051 68 119 .. 67 118 .. 60 133 .. 0.63 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 6.2e-07 Trypan_PARP 68 eetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepe 119 e+e e +++ ete e ++e ete + +++p+p+p+++p+p+p+p+p+p+p+ T181584_3 67 AEAEAEAKAKAETETEAKAEGETEAKRKPKPKPKPKPKPKPKPHPHPHPHPH 118 4666777777777777777777776666666666666666666555555554 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 5.6 0.00017 1.4 215 292 .. 66 143 .. 56 146 .. 0.75 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00017 Tim54 215 eeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasaelppeiPellqpvlviplphllGflntper 292 +e+e+e+++++e+e+e+++e e+e++ k+k k++pkp +p+ +++ + p+ +++ +++l + p l Gf ++p r T181584_3 66 AAEAEAEAKAKAETETEAKAEGETEAKRKPKPKPKPKPKPKPKPHPHPHPHPHRSNEANSLLHLTAPSLKGFNEFPAR 143 2233333445555566666677777777888888888899999999999999999999*****************988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 291 (0.0178462); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 8209.56 // Query: T045468_1 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3146.91 // Query: T045468_2 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3208.62 // Query: T045468_3 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3146.91 // Query: T315157_1 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7363.99 // Query: T315157_2 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7363.99 // Query: T315157_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 7358.69 // Query: T125937_1 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 11928.64 // Query: T125937_2 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 12365.14 // Query: T125937_3 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12365.14 // Query: T272754_1 [L=577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 67 (0.00410892); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3236.66 // Query: T272754_2 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00067 19.1 1.2 0.0045 16.5 0.1 2.8 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.1 0.072 1.2e+03 11 21 .] 275 285 .. 274 285 .. 0.87 2 ! 16.5 0.1 2.8e-07 0.0045 4 20 .. 374 390 .. 374 391 .. 0.91 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.072 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272754_2 275 WRGFVLTRSFR 285 9***9988886 PP == domain 2 score: 16.5 bits; conditional E-value: 2.8e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272754_2 374 VTVMQAHVRGWLERKRL 390 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 354 (0.0217098); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 2996.07 // Query: T272754_3 [L=576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3362.93 // Query: T110890_1 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-08 34.3 0.3 5.7e-08 33.4 0.3 1.4 1 Lbh Cardiac transcription factor regulator, Development Domain annotation for each model (and alignments): >> Lbh Cardiac transcription factor regulator, Developmental protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.3 3.5e-12 5.7e-08 55 80 .. 550 575 .. 543 580 .. 0.93 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 3.5e-12 Lbh 55 trLPSiVVEasevgeeesgelrwPhe 80 rLPSiVVE+se +esgelrwP e T110890_1 550 QRLPSIVVEPSEADPVESGELRWPLE 575 59**********************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3932.24 // Query: T110890_2 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 3932.24 // Query: T110890_3 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3783.85 // Query: T379111_1 [L=2961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 14605.03 // Query: T379111_2 [L=2961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.59 # Mc/sec: 14357.49 // Query: T379111_3 [L=2961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.57 # Mc/sec: 14605.03 // Query: T276918_1 [L=6355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-35 122.6 15.7 2.6e-33 115.2 3.7 3.1 3 Transposase_22 L1 transposable element 3.5e-10 39.1 10.2 1.7e-07 30.6 0.7 3.3 3 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.0 6.4e-06 0.053 305 332 .. 2223 2250 .. 2217 2254 .. 0.92 2 ? 0.6 1.9 0.022 1.8e+02 3 77 .. 3451 3526 .. 3448 3537 .. 0.76 3 ! 115.2 3.7 3.2e-37 2.6e-33 157 334 .. 3552 3726 .. 3543 3728 .. 0.91 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 6.4e-06 HHHTT---EEETTTEEEEESSSSEEEES CS Transposase_22 305 lkekkfqPrllyPaklsiiidGeikvfi 332 lkek ++Pr+l+ k s++++Geik f+ T276918_1 2223 LKEKTLKPRILHLMKTSFTSEGEIKSFQ 2250 9************************996 PP == domain 2 score: 0.6 bits; conditional E-value: 0.022 XXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX.XXXXX CS Transposase_22 3 kkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkeliesk....akele.alkek 77 k+ n t ++ ns++ ++s P ke P+ e + lk+f+e+ +e + ykel+ li+ +ke++ + k+ T276918_1 3451 KQGNMTIPEKHNSPAVDKSQP-KEILKIPDK-EFKILILKKFNEMCEES--ENQYKELRRLIQNMneifTKEIDtFFKKN 3526 566788889999999999998.677888998.7888999*******996..67899999998875222268887744443 PP == domain 3 score: 115.2 bits; conditional E-value: 3.2e-37 HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS- CS Transposase_22 157 deieeidrevkerekrkkileqsl.qviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrass 248 d + e + k++ kr++++eqsl +d+++r nl++iG++e+e e l++len++n+ i en+P l+++++++ qe++++P ++ k++ + T276918_1 3552 DRLFETIQSNKNKAKRMRKNEQSL*DT-WDYIQRLNLQVIGLPEDE-EILRGLENLFNEGIYENLPSLARDLSIQTQEAQQSPGKHRAKKTLP 3642 666666678899999******998885.***************976.679*************************************999988 PP -EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHHHTT---EEE.TTTEEEEESSSSEEEESSH CS Transposase_22 249 rhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilkekkfqPrll.yPaklsiiidGeikvfidk 334 + + +kv+ k++ilk+ rek vt+kG irl ++sa tl+arre d++++l+ek+f+P yPa+l++i +Geik f +k T276918_1 3643 QC-TMNQSKVKVKEQILKS-REKHLVTYKGNFIRLRVEFSAKTLQARRE*G-DIFKLLQEKNFRPT-I*YPARLTFINEGEIKSFPEK 3726 75.67899*********95.***************************9554.9************5.899***************887 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.2 0.096 7.9e+02 11 19 .] 1939 1947 .. 1939 1947 .. 0.97 2 ! 30.6 0.7 2.1e-11 1.7e-07 1 19 [] 5670 5688 .. 5670 5688 .. 0.98 3 ! 13.4 0.2 5.3e-06 0.043 1 12 [. 5857 5868 .. 5857 5868 .. 0.91 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.096 DUF1725 11 nIILSEisQ 19 nI+L++isQ T276918_1 1939 NILLKKISQ 1947 8*******9 PP == domain 2 score: 30.6 bits; conditional E-value: 2.1e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS+ sQ T276918_1 5670 SFVGTWMKLETIILSKLSQ 5688 7*****************9 PP == domain 3 score: 13.4 bits; conditional E-value: 5.3e-06 DUF1725 1 kFagKWMELEnI 12 +Fa++WMELE I T276918_1 5857 SFAATWMELEVI 5868 7*********66 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 853 (0.052312); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.85u 0.40s 00:00:02.25 Elapsed: 00:00:00.70 # Mc/sec: 25972.25 // Query: T276918_2 [L=6355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 690 (0.0423157); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.39s 00:00:02.11 Elapsed: 00:00:00.65 # Mc/sec: 27970.11 // Query: T276918_3 [L=6355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0036 16.7 1.0 0.31 10.4 0.2 2.3 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.7 0.0 0.001 17 1 22 [. 4788 4814 .. 4788 4817 .. 0.90 2 ! 10.4 0.2 1.9e-05 0.31 34 84 .. 4923 4977 .. 4907 4979 .. 0.89 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.001 EE-TT......S-EEE......-THHH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykal 22 ipK + +++yRpisl+++d k+l T276918_3 4788 IPKSDkdtteKENYRPISLMNIDSKIL 4814 78888889999**************98 PP == domain 2 score: 10.4 bits; conditional E-value: 1.9e-05 ....-------HHHH.................HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 34 lekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvp 84 ++k++ +nq+gf +g + + ++ ++++++++ k k++++ ++D ++aF++ + T276918_3 4923 IRKIIYHNQVGFVSGIQGWFNIckliNVIHHINRIKDKNHTINSIDAENAFNKFQ 4977 478899**********999999***99999999999999*************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 527 (0.0323194); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.65u 0.38s 00:00:02.02 Elapsed: 00:00:00.62 # Mc/sec: 29323.51 // Query: T381525_1 [L=6543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 631 (0.0386974); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.67 # Mc/sec: 27937.93 // Query: T381525_2 [L=6543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.40s 00:00:01.99 Elapsed: 00:00:00.71 # Mc/sec: 26363.96 // Query: T381525_3 [L=6542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.068 13.2 0.0 0.13 12.4 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 7.7e-06 0.13 18 53 .. 3012 3047 .. 3007 3051 .. 0.89 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7.7e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381525_3 3012 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 3047 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.67 # Mc/sec: 27933.66 // Query: T156217_1 [L=944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5511.48 // Query: T156217_2 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.54 # Mc/sec: 4995.86 // Query: T156217_3 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 5289.73 // Query: T368470_1 [L=3986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.60 # Mc/sec: 19005.45 // Query: T368470_2 [L=3985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.57 # Mc/sec: 19655.88 // Query: T368470_3 [L=3985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.60 # Mc/sec: 19000.68 // Query: T258983_1 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 11359.47 // Query: T258983_2 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.57 # Mc/sec: 11359.47 // Query: T258983_3 [L=2303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.57 # Mc/sec: 11359.47 // Query: T315664_1 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 8417.63 // Query: T315664_2 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 8712.98 // Query: T315664_3 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.27 11.3 5.9 22 5.2 0.4 3.3 2 MSG Major surface glycoprotein Domain annotation for each model (and alignments): >> MSG Major surface glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.4 0.0014 22 7 38 .. 1098 1129 .. 1092 1144 .. 0.62 2 ? 1.8 4.2 0.016 2.6e+02 11 11 .. 1172 1172 .. 1125 1225 .. 0.60 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0014 MSG 7 CielleeCyfleesckntkkkCdklkekCkkk 38 C +++C l + c+ ++ +C l +C++ T315664_3 1098 CRGNDPHCLLLPTHCRGNDPHCLLLPTHCRGN 1129 66666666666666666666666666666543 PP == domain 2 score: 1.8 bits; conditional E-value: 0.016 MSG 11 l 11 + T315664_3 1172 D 1172 2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 8712.98 // Query: T222358_1 [L=4299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.64 # Mc/sec: 19216.73 // Query: T222358_2 [L=4299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.39s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 14998.42 // Query: T222358_3 [L=4298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.74 # Mc/sec: 16616.01 // Query: T337179_1 [L=6060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1509 (0.0925426); expected 326.1 (0.02) Passed bias filter: 389 (0.0238562); expected 326.1 (0.02) Passed Vit filter: 305 (0.0187048); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.20u 0.59s 00:00:05.79 Elapsed: 00:00:01.18 # Mc/sec: 14692.06 // Query: T337179_2 [L=6060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1839 (0.112781); expected 326.1 (0.02) Passed bias filter: 507 (0.0310928); expected 326.1 (0.02) Passed Vit filter: 449 (0.0275359); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.26u 0.62s 00:00:07.88 Elapsed: 00:00:01.50 # Mc/sec: 11557.75 // Query: T337179_3 [L=6060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1449 (0.088863); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 210 (0.0128787); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.46u 0.49s 00:00:04.95 Elapsed: 00:00:01.18 # Mc/sec: 14692.06 // Query: T344413_1 [L=4181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-32 110.5 0.3 1.2e-31 109.8 0.3 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.8 0.3 7.5e-36 1.2e-31 65 222 .] 3151 3334 .. 3125 3334 .. 0.93 Alignments for each domain: == domain 1 score: 109.8 bits; conditional E-value: 7.5e-36 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T....... CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.... 158 k+++++++D +k F+++++++ l++l++++v+ + +++i++++ + ++++ +n ++ e ++ k+g++qG++lSPllfn++++ l r +r++ T344413_1 3151 DDKNHMIISIDAEKSFNKIQHPFMLKTLNKLGVDGMYLKIIRAIYDKSTTNIILNRQKLEALPLKTGIRQGCPLSPLLFNMVLEVLARAIRQEKeikg 3248 46899****************************************************99*********************************99**** PP ........TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 .....kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin K +++l+ ++ ++++kyLG++l T344413_1 3249 iqigkEEVKLSLFADDMIVYLENsIVSAQNLLKLISNFSKVSGYKINVLKLQAFLYtnnrqteieittKFpfiiATKRIKYLGIPL 3334 ***********************7888***************************99999988887765226789*********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.56u 0.42s 00:00:01.98 Elapsed: 00:00:00.76 # Mc/sec: 15738.33 // Query: T344413_2 [L=4180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-34 118.6 13.4 2.2e-33 115.5 4.7 2.4 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.4 7.6e-05 1.2 30 83 .. 2262 2327 .. 2251 2340 .. 0.74 2 ! 115.5 4.7 1.4e-37 2.2e-33 202 295 .. 2370 2465 .. 2349 2473 .. 0.93 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 7.6e-05 XXXX..XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.XXXXXXX..........XXXX CS Transposase_22 30 sPatteeldpdlkdflelriedikkdfyke...lkelieskakele.alkekee..........ntek 83 Pa e+++++++f+el + +++ + lke + +++ke + k ee nt+ T344413_2 2262 TPAR--EQNWMENEFNELTEVSFRRWVITNss*LKEHVLTQCKEAKnLDKRSEElltritslekNTND 2327 4555..9******************887655799**********985556555544444433333333 PP == domain 2 score: 115.5 bits; conditional E-value: 1.4e-37 T--HHHHHHHHHHHHHHH-HHHHHHT---EE..EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH CS Transposase_22 202 deqlkklenilnkiieenfPnlkkeanviiq..eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl 292 +e+++klen+l++ii+enfPnl+++an++iq ei+ P+ ++ +ra++rhii+r+tkv+ k+k l +rek +vt kGkPirltadl + T344413_2 2370 VENGTKLENTLQEIIQENFPNLARQANIQIQihEIQGIPQTHSLRRATPRHIIIRFTKVEVKEKRLSVAREKSQVTHKGKPIRLTADLCRNPA 2462 689************************988766*******************************************************87655 PP HHH CS Transposase_22 293 kar 295 + T344413_2 2463 SQK 2465 554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.38s 00:00:01.81 Elapsed: 00:00:00.70 # Mc/sec: 17083.24 // Query: T344413_3 [L=4180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-33 113.9 0.3 1.2e-32 113.0 0.3 1.4 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.0 0.3 7.7e-37 1.2e-32 287 367 .. 2456 2538 .. 2454 2539 .. 0.98 Alignments for each domain: == domain 1 score: 113.0 bits; conditional E-value: 7.7e-37 --HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 287 lsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +saetl+arrew ++++ilke+kfqPr++yPak+s+i+dGeik f dk++lrd ++ rP l+++l+e ++e ++ yq+l+++ T344413_3 2456 ISAETLQARREWRPIFNILKENKFQPRISYPAKVSFISDGEIKSFTDKQMLRDVVTNRPDLQEFLEEalNMENNNLYQPLQKH 2538 8********************************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 609 (0.0373482); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:00.86 # Mc/sec: 13904.96 // Query: T168002_1 [L=7099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.43s 00:00:02.65 Elapsed: 00:00:00.99 # Mc/sec: 20514.17 // Query: T168002_2 [L=7099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-25 89.5 1.0 3.2e-25 88.7 1.0 1.3 1 TLV_coat ENV polyprotein (coat polyprotein) 6e-10 39.2 0.0 1.1e-09 38.4 0.0 1.3 1 rve Integrase core domain 0.0013 18.6 0.2 0.0038 17.1 0.2 1.9 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.013 15.1 0.0 0.013 15.1 0.0 2.0 2 Gag_MA Matrix protein (MA), p15 0.55 9.8 5.5 1.4 8.5 5.5 1.7 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.7 1.0 9.8e-29 3.2e-25 423 544 .. 6690 6810 .. 6685 6813 .. 0.86 Alignments for each domain: == domain 1 score: 88.7 bits; conditional E-value: 9.8e-29 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XX CS TLV_coat 423 tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfeg 520 +++ +L l + + +++s+s l+ +++ la vvlQN GLDlL++e+GGlC L+EeC F ++sg+v d ++kL++r ++ + ++ ++ T168002_2 6690 HHSAASLMTSLFS-ITDISQSLSVLQAQVDTLAAVVLQNCQGLDLLTAEKGGLCIFLNEECLFNFNQSGLVYDDVKKLKNRAQNLASQATNYAGPTWP 6786 5566666666654.7889***************************************************************98766666665555226 PP XXXXXXXXXXXX....XXXXXXXX CS TLV_coat 521 llglspwlttllstilgpLlllLL 544 l + wl++++s+++ ++lllLL T168002_2 6787 LSNWVSWLLPIVSSLIPVFLLLLL 6810 99**********999988888776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.4 0.0 3.4e-13 1.1e-09 4 99 .. 5456 5547 .. 5455 5549 .. 0.87 Alignments for each domain: == domain 1 score: 38.4 bits; conditional E-value: 3.4e-13 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrp 99 p + +q+D+t+ + + ++ yllv++d+f+++i a+++++e+++ ++ ll ++ +fg + s ng++++s+ ++++ + lgi++++++p T168002_2 5456 PTQDYQIDFTHRP--QVKKLRYLLVWVDTFTGWIEAFPTRSEKATTVISSLLSDIIPWFGL--ATSIQSNNGPAFVSQITQAVSQALGIQWKLHAP 5547 56779*****999..555579*********************7777777777777777777..79****************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.2 1.2e-06 0.0038 2 15 .. 4504 4517 .. 4503 4517 .. 0.92 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.2e-06 CTSSSSSSSSTTTT CS zf-CCHC 2 kCynCGepGHiard 15 +C++C++pGH+a++ T168002_2 4504 PCFKCQKPGHWASE 4517 7***********97 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.6 2.7 8.8e+03 38 51 .. 3546 3559 .. 3545 3563 .. 0.90 2 ? 15.1 0.0 3.9e-06 0.013 28 63 .. 4073 4112 .. 4070 4121 .. 0.82 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 2.7 HHTTGGGGSSS--T CS Gag_MA 38 CsseWptlnvgWPr 51 C+ +W+ ++ WP+ T168002_2 3546 CCKQWTPFGSLWPH 3559 999**********7 PP == domain 2 score: 15.1 bits; conditional E-value: 3.9e-06 ---HHHHHHHHHTTGGGGSS....S--TT----HHHHHHH CS Gag_MA 28 evrkkklitlCsseWptlnv....gWPreGtfdltviakv 63 +++ k li +C+ Wp ++ +WP++Gtf+l++++ + T168002_2 4073 DIKAKCLIFFCNIAWPQYKLdnssKWPENGTFNLSILQDL 4112 799999**********997533337**********99876 PP >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 5.5 0.00042 1.4 7 20 .. 5734 5747 .. 5734 5753 .. 0.88 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00042 DUF3704 7 SFGYMPksgIAGSS 20 SFGYMP +g AGS T168002_2 5734 SFGYMPSNGMAGSN 5747 9***********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.18u 0.34s 00:00:02.52 Elapsed: 00:00:00.79 # Mc/sec: 25707.64 // Query: T168002_3 [L=7098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-14 52.9 0.0 4.7e-14 52.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 1.5e-13 51.0 0.0 2.4e-13 50.3 0.0 1.2 1 RNase_H RNase H ------ inclusion threshold ------ 0.016 15.4 0.0 0.031 14.4 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.3 0.0 8.7e-18 4.7e-14 32 185 .. 4278 4431 .. 4250 4436 .. 0.85 Alignments for each domain: == domain 1 score: 52.3 bits; conditional E-value: 8.7e-18 Gag_p30 32 esillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpnevdeafpltrpdwdyeta.egreslklyrqlllaglrgaarrptnlak 128 + + +++ tw d + +l + ++++rv + a+ + + l++ a + p+w+y+t +g + l+ gl+ aa + n + T168002_3 4278 QYLTQSYNLTWSDLNVILTFTPSPDKQERVYFLAQSYTDTHWLHEPGLQEG-TRAVAREYPHWQYQTDsPGIARRDYMVSCLVEGLKKAAYSAVNYDN 4374 555667778888888888888888888888888888777776666666654.57888999******962576666667789***************** PP Gag_p30 129 vkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklq 185 +k +qgk e+pa f+ rl + r++t d e pe + + + fi+q a+dirk lq T168002_3 4375 LKVTTQGKVENPAQFIARLAATLRHFTALDQEGPEGHLILNMHFITQPAPDIRKNLQ 4431 *******************************************************98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.3 0.0 4.5e-17 2.4e-13 3 109 .. 5191 5297 .. 5189 5306 .. 0.81 Alignments for each domain: == domain 1 score: 50.3 bits; conditional E-value: 4.5e-17 SEEEEEEEEEECT..TTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSB CS RNase_H 3 avvvYtDGsclgn..sgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkp 97 +++++ DGs+++ +++++ag+v+ + ++ + +++l++ t ++aEL+A+++ L ++ +vniytDSkY+++ ++ w +++ tt+ + T168002_3 5191 DHTWFIDGSSSRPnrQSPARAGYVVVSSTSVTEATALHPSITSQQAELIALTQDLTlV--KGLCVNIYTDSKYAFHIVHYHAVIWAERGFLTTQGS-S 5285 679******9976346666****87666567888888899***************944..99**************77877777888888556555.7 PP HTTHHHHHHHHH CS RNase_H 98 vknkelaellke 109 ++n++l+++l + T168002_3 5286 IINASLIKILLK 5297 ***999999854 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 5.8e-06 0.031 19 89 .. 4604 4669 .. 4599 4669 .. 0.88 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 5.8e-06 EE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 19 llDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllG 89 l+D GA++t + + P + a +++ i g+ + + + + +l+++ f + s+l++p++pv+llG T168002_3 4604 LIDMGATHTTLLSFQGPVS----LAPVTVVVIDGQAsRPLKTPQLLCQLGQHSFMH--SFLVIPTCPVPLLG 4669 99*****************....9********999945555566677888999999..************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.13u 0.39s 00:00:02.52 Elapsed: 00:00:00.95 # Mc/sec: 21374.92 // Query: T124944_1 [L=2112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 9154.66 // Query: T124944_2 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.70 # Mc/sec: 8627.45 // Query: T124944_3 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 9013.75 // Query: T109575_1 [L=2434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.71 # Mc/sec: 9807.41 // Query: T109575_2 [L=2434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.68 # Mc/sec: 10240.09 // Query: T109575_3 [L=2433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 11600.67 // Query: T125951_1 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 4834.39 // Query: T125951_2 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5852.15 // Query: T125951_3 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 5212.07 // Query: T188691_1 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 6122.18 // Query: T188691_2 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.69 # Mc/sec: 6654.54 // Query: T188691_3 [L=1604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 548 (0.0336073); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 6748.19 // Query: T004106_1 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 5169.93 // Query: T004106_2 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.70 # Mc/sec: 5169.93 // Query: T004106_3 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1655 (0.101496); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.36s 00:00:01.75 Elapsed: 00:00:00.84 # Mc/sec: 4308.27 // Query: T322058_1 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-27 93.6 223.5 2e-14 53.4 12.6 20.0 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.5 0.43 6.9e+03 7 16 .. 97 105 .. 87 123 .. 0.63 2 ? -1.1 0.1 0.13 2.1e+03 38 47 .. 871 880 .. 870 884 .. 0.76 3 ? 0.5 0.1 0.042 6.8e+02 7 34 .. 883 909 .. 879 911 .. 0.88 4 ! 31.0 5.2 1.2e-11 1.9e-07 3 49 .. 911 956 .. 909 957 .. 0.96 5 ! 13.1 6.5 4.6e-06 0.075 24 47 .. 952 975 .. 951 979 .. 0.93 6 ? 1.5 1.0 0.02 3.3e+02 34 49 .. 983 998 .. 980 999 .. 0.91 7 ? -13.4 22.9 1 1.6e+04 8 31 .. 1021 1081 .. 999 1102 .. 0.57 8 ? 1.2 7.5 0.025 4e+02 6 46 .. 1087 1119 .. 1083 1121 .. 0.54 9 ! 33.6 11.6 1.9e-12 3e-08 2 50 .] 1108 1156 .. 1107 1156 .. 0.89 10 ! 8.7 4.8 0.00011 1.8 29 50 .] 1156 1177 .. 1154 1177 .. 0.93 11 ! 18.3 2.4 1.1e-07 0.0018 17 50 .] 1177 1210 .. 1177 1210 .. 0.95 12 ! 53.4 12.6 1.3e-18 2e-14 1 50 [] 1215 1262 .. 1215 1262 .. 0.99 13 ? 1.4 9.0 0.021 3.4e+02 2 27 .. 1326 1351 .. 1325 1376 .. 0.70 14 ! 6.1 18.1 0.0007 11 13 46 .. 1389 1436 .. 1352 1439 .. 0.67 15 ? -1.7 11.1 0.2 3.3e+03 9 27 .. 1442 1459 .. 1441 1492 .. 0.69 16 ? -8.8 9.4 1 1.6e+04 7 20 .. 1493 1505 .. 1467 1520 .. 0.71 17 ! 16.9 15.9 3.1e-07 0.0051 1 39 [. 1521 1603 .. 1521 1618 .. 0.96 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.43 DUF4705 7 srrpLqapas 16 ++r+L+ p T322058_1 97 GQRRLH-PEN 105 577777.554 PP == domain 2 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322058_1 871 LPPGSLSRPR 880 5788888884 PP == domain 3 score: 0.5 bits; conditional E-value: 0.042 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322058_1 883 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 909 678889.99***********99999877 PP == domain 4 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322058_1 911 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 956 689*******.************************************ PP == domain 5 score: 13.1 bits; conditional E-value: 4.6e-06 DUF4705 24 rpsaqLpvAsaGpklppagLsrPs 47 rps++ +As+Gp lpp+gL rP+ T322058_1 952 RPSSCFLAASPGPALPPGGLCRPR 975 8**********************6 PP == domain 6 score: 1.5 bits; conditional E-value: 0.02 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322058_1 983 QGQLLPPGALCRPKSS 998 79999********997 PP == domain 7 score: -13.4 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322058_1 1021 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 1081 5777766666666666653333333333333333333223222111134555555555555 PP == domain 8 score: 1.2 bits; conditional E-value: 0.025 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+ ++L +AsaGp + L+rP T322058_1 1087 ASSR-LTAASPVQS-------SCLSAASAGPAPACQCLFRP 1119 5555.554444555.......55555555555555555555 PP == domain 9 score: 33.6 bits; conditional E-value: 1.9e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322058_1 1108 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1156 9******9555.7765499***************************9976 PP == domain 10 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322058_1 1156 LRASSPGPALPPGCVSRPDSCL 1177 7799*****************9 PP == domain 11 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322058_1 1177 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1210 68899999************************87 PP == domain 12 score: 53.4 bits; conditional E-value: 1.3e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322058_1 1215 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1262 9*********************************************..97 PP == domain 13 score: 1.4 bits; conditional E-value: 0.021 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322058_1 1326 GRGWASsSWPLQ-THLQPPGVLSGPSS 1351 78999637****.88888888888876 PP == domain 14 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322058_1 1389 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1436 25578889********************55555555555555555555 PP == domain 15 score: -1.7 bits; conditional E-value: 0.2 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322058_1 1442 RPLQ-AQLQPPGGLCRPKS 1459 9***.99999999888865 PP == domain 16 score: -8.8 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqas 20 s +pLq +++l ++ T322058_1 1493 SSQPLQ-AQLLLPQ 1505 568888.5555444 PP == domain 17 score: 16.9 bits; conditional E-value: 3.1e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322058_1 1521 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1603 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 7239.14 // Query: T322058_2 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-48 161.5 247.2 2.6e-18 65.8 10.8 20.9 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.2 0.3 4.9e+03 16 46 .. 443 473 .. 435 475 .. 0.82 2 ! 21.4 0.9 1.2e-08 0.00019 27 48 .. 870 891 .. 858 891 .. 0.94 3 ! 4.5 3.1 0.0023 38 2 39 .. 899 936 .. 899 940 .. 0.86 4 ! 37.1 19.3 1.4e-13 2.4e-09 1 50 [] 951 1009 .. 951 1009 .. 0.96 5 ! 10.9 3.2 2.2e-05 0.36 29 49 .. 1009 1029 .. 1008 1031 .. 0.90 6 ! 3.9 5.3 0.0035 57 1 19 [. 1048 1069 .. 1035 1072 .. 0.67 7 ? -10.2 29.0 1 1.6e+04 1 39 [. 1073 1134 .. 1048 1135 .. 0.75 8 ! 3.9 13.0 0.0035 57 7 39 .. 1135 1177 .. 1133 1186 .. 0.87 9 ! 6.2 1.7 0.00068 11 1 18 [. 1171 1187 .. 1171 1203 .. 0.75 10 ! 16.3 2.3 4.6e-07 0.0076 1 26 [. 1204 1228 .. 1204 1230 .. 0.95 11 ! 17.4 5.8 2.2e-07 0.0035 1 30 [. 1237 1276 .. 1237 1278 .. 0.93 12 ! 14.3 10.8 1.9e-06 0.032 18 50 .] 1331 1363 .. 1316 1363 .. 0.87 13 ! 23.1 5.9 3.6e-09 5.9e-05 17 50 .] 1363 1396 .. 1362 1396 .. 0.96 14 ! 65.8 10.8 1.6e-22 2.6e-18 1 50 [] 1401 1450 .. 1401 1450 .. 0.99 15 ! 11.9 1.2 1.1e-05 0.18 25 44 .. 1446 1465 .. 1446 1466 .. 0.95 16 ! 16.2 7.3 5e-07 0.0082 20 49 .. 1473 1502 .. 1471 1504 .. 0.90 17 ? 0.1 1.7 0.053 8.6e+02 19 46 .. 1513 1544 .. 1511 1546 .. 0.87 18 ? 0.9 3.3 0.03 4.9e+02 4 29 .. 1565 1589 .. 1563 1589 .. 0.88 19 ! 18.4 6.9 1e-07 0.0016 2 35 .. 1588 1620 .. 1587 1627 .. 0.92 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.3 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322058_2 443 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 473 5677788888888889999898888999888 PP == domain 2 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322058_2 870 SYLPAASPGPELSPVGLHRPSS 891 67******************98 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322058_2 899 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 936 67788999888.899********************9854 PP == domain 4 score: 37.1 bits; conditional E-value: 1.4e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322058_2 951 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 1009 9*****************99997888999****************************98 PP == domain 5 score: 10.9 bits; conditional E-value: 2.2e-05 DUF4705 29 LpvAsaGpklppagLsrPssC 49 L +As+G k p ++LsrPss+ T322058_2 1009 LSAASPGAKVPRVSLSRPSSS 1029 789***************975 PP == domain 6 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 1 PgpAPasrrpLqa...paslqa 19 PgpA ++rpLqa p +l++ T322058_2 1048 PGPAFDFWRPLQAstrPGLLPP 1069 6777777777776666555554 PP == domain 7 score: -10.2 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322058_2 1073 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1134 56666666666669999999999889888888887777777777775447899999999987 PP == domain 8 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 7 srrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322058_2 1135 FRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1177 69*************8888776549**************9854 PP == domain 9 score: 6.2 bits; conditional E-value: 0.00068 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322058_2 1171 PGPTPASQQPLW-TQCLP 1187 9**********9.77766 PP == domain 10 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322058_2 1204 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1228 9***********.9***********7 PP == domain 11 score: 17.4 bits; conditional E-value: 2.2e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLp 30 P+pA+asrrpLqa pas+q s l + s+++ T322058_2 1237 PRPAWASRRPLQAqvvlksaspgPASQQVSKLFWLSSCPA 1276 99**************************999999999985 PP == domain 12 score: 14.3 bits; conditional E-value: 1.9e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322058_2 1331 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1363 899***************************987 PP == domain 13 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322058_2 1363 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1396 899*****************************87 PP == domain 14 score: 65.8 bits; conditional E-value: 1.6e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322058_2 1401 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1450 9***********************************************98 PP == domain 15 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322058_2 1446 PSSSLPAASAGLSRPQVGLE 1465 99****************96 PP == domain 16 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322058_2 1473 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1502 67888**********************975 PP == domain 17 score: 0.1 bits; conditional E-value: 0.053 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322058_2 1513 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1544 67888999999999***99999999******9 PP == domain 18 score: 0.9 bits; conditional E-value: 0.03 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322058_2 1565 RPASSR-LTAPSPVQSSCLSATSAGP 1589 599999.*99999*******999976 PP == domain 19 score: 18.4 bits; conditional E-value: 1e-07 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322058_2 1588 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1620 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 7455.24 // Query: T322058_3 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-08 32.4 213.4 0.0031 17.5 6.0 20.1 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 1.0 0.00018 3 4 24 .. 869 889 .. 868 897 .. 0.88 2 ? -0.4 2.7 0.08 1.3e+03 1 25 [. 919 942 .. 919 942 .. 0.75 3 ? -1.1 0.2 0.13 2e+03 41 49 .. 958 966 .. 952 967 .. 0.85 4 ? -1.6 1.0 0.19 3.1e+03 7 15 .. 967 974 .. 961 980 .. 0.76 5 ! 14.6 1.3 1.5e-06 0.025 1 14 [. 982 994 .. 982 1001 .. 0.90 6 ! 2.9 18.7 0.0072 1.2e+02 1 50 [] 1003 1068 .. 1003 1068 .. 0.88 7 ? -8.8 19.3 1 1.6e+04 3 31 .. 1039 1114 .. 1037 1117 .. 0.62 8 ? 2.4 10.0 0.011 1.7e+02 6 49 .. 1123 1165 .. 1120 1166 .. 0.91 9 ? -5.1 23.3 1 1.6e+04 13 42 .. 1172 1233 .. 1145 1252 .. 0.66 10 ? 2.0 1.1 0.013 2.2e+02 21 35 .. 1268 1282 .. 1255 1289 .. 0.84 11 ! 5.6 7.8 0.001 16 16 43 .. 1339 1367 .. 1319 1374 .. 0.74 12 ! 17.5 6.0 1.9e-07 0.0031 1 26 [. 1390 1414 .. 1390 1416 .. 0.96 13 ! 12.1 0.5 9.8e-06 0.16 2 15 .. 1424 1436 .. 1424 1443 .. 0.82 14 ! 14.7 0.7 1.5e-06 0.024 1 13 [. 1444 1456 .. 1444 1474 .. 0.87 15 ! 6.6 12.2 0.0005 8.1 1 46 [. 1476 1522 .. 1476 1524 .. 0.79 16 ! 2.6 0.7 0.0087 1.4e+02 29 50 .] 1526 1548 .. 1526 1548 .. 0.86 17 ! 16.4 16.9 4.2e-07 0.0069 2 39 .. 1554 1613 .. 1553 1620 .. 0.90 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322058_3 869 APTSRQPLQAQNFLQSASTDQ 889 9********999999987655 PP == domain 2 score: -0.4 bits; conditional E-value: 0.08 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322058_3 919 TGTAPSLQWPL*tQ---LLPPSLLSRP 942 799*******9744...6676666665 PP == domain 3 score: -1.1 bits; conditional E-value: 0.13 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322058_3 958 GSLSRPSSS 966 689999997 PP == domain 4 score: -1.6 bits; conditional E-value: 0.19 DUF4705 7 srrpLqapa 15 srrpLq ++ T322058_3 967 SRRPLQ-AQ 974 89****.65 PP == domain 5 score: 14.6 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322058_3 982 PGPAPASRRPLQ-A 994 9***********.5 PP == domain 6 score: 2.9 bits; conditional E-value: 0.0072 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322058_3 1003 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 1068 9***********999**********97777666666778889************9999...88899998 PP == domain 7 score: -8.8 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322058_3 1039 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1114 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 8 score: 2.4 bits; conditional E-value: 0.011 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322058_3 1123 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1165 59*****.************9...679999998899*********97 PP == domain 9 score: -5.1 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322058_3 1172 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1233 36666666666666666666666666666665567779********************5543 PP == domain 10 score: 2.0 bits; conditional E-value: 0.013 DUF4705 21 glsrpsaqLpvAsaG 35 ++ ++aqLp A+a T322058_3 1268 FFGLAPAQLPTAFAA 1282 599**********85 PP == domain 11 score: 5.6 bits; conditional E-value: 0.001 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322058_3 1339 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1367 3356889***************9887776 PP == domain 12 score: 17.5 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322058_3 1390 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1414 9***********.***********96 PP == domain 13 score: 12.1 bits; conditional E-value: 9.8e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322058_3 1424 GPAWASRQPLQA-Q 1436 9**********4.4 PP == domain 14 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322058_3 1444 PGPAPASRRPLQA 1456 9***********7 PP == domain 15 score: 6.6 bits; conditional E-value: 0.0005 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322058_3 1476 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1522 9***********999*****99888765.4566666544777778777 PP == domain 16 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322058_3 1526 LLVASSGPELdLQSAFAGPASCL 1548 789*******8677888999998 PP == domain 17 score: 16.4 bits; conditional E-value: 4.2e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322058_3 1554 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1613 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 7928.59 // Query: T364415_1 [L=5712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.006 16.1 0.6 0.014 14.9 0.6 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.6 8.9e-07 0.014 3 18 .. 3882 3897 .. 3880 3897 .. 0.95 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 8.9e-07 DUF1725 3 agKWMELEnIILSEis 18 a++WMEL I+LSEis T364415_1 3882 ATTWMELQVIMLSEIS 3897 89*************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.75u 0.38s 00:00:02.13 Elapsed: 00:00:00.82 # Mc/sec: 19928.12 // Query: T364415_2 [L=5712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.35s 00:00:02.45 Elapsed: 00:00:00.86 # Mc/sec: 19001.23 // Query: T364415_3 [L=5711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.41s 00:00:02.51 Elapsed: 00:00:00.91 # Mc/sec: 17954.07 // Query: T015890_1 [L=2215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 8924.98 // Query: T015890_2 [L=2215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.66 # Mc/sec: 9601.12 // Query: T015890_3 [L=2214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 9896.68 // Query: T119564_1 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 6753.80 // Query: T119564_2 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 5838.03 // Query: T119564_3 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.61 # Mc/sec: 5646.62 // Query: T127057_1 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1506 (0.0923586); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.70 # Mc/sec: 2721.88 // Query: T127057_2 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1009 (0.0618791); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 3073.09 // Query: T127057_3 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 933 (0.0572182); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 3882.55 // Query: T164345_1 [L=628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 3266.55 // Query: T164345_2 [L=628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 2945.25 // Query: T164345_3 [L=628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3389.81 // Query: T274998_1 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.53 # Mc/sec: 3238.68 // Query: T274998_2 [L=600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 3300.96 // Query: T274998_3 [L=599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 3295.46 // Query: T249683_1 [L=4159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.62 # Mc/sec: 19190.63 // Query: T249683_2 [L=4159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.60 # Mc/sec: 19830.32 // Query: T249683_3 [L=4158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 632 (0.0387587); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.40s 00:00:01.64 Elapsed: 00:00:00.62 # Mc/sec: 19186.02 // Query: T348841_1 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 4463.97 // Query: T348841_2 [L=826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4544.32 // Query: T348841_3 [L=826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4544.32 // Query: T100533_1 [L=1448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 7397.29 // Query: T100533_2 [L=1447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-05 24.0 2.9 4e-05 24.0 2.9 1.6 2 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 0.82 1.3e+04 74 89 .. 25 40 .. 14 44 .. 0.75 2 ! 24.0 2.9 2.5e-09 4e-05 48 96 .. 160 210 .. 155 218 .. 0.92 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.82 SBEEEEEEEEESSSCT CS RnaseA 74 skvsvttCkltggskk 89 +v t C+lt+g+k T100533_2 25 LRVFHTACTLTSGKKI 40 5677899****99985 PP == domain 2 score: 24.0 bits; conditional E-value: 2.5e-09 HHHHHGGGGSTEEECTTS..SSSEEEESSBEEEEEEEEESSSCTTC-EEEE CS RnaseA 48 leevkavCktknvtcknn..rkncheskskvsvttCkltggskkpnCkYke 96 l++++++C+t+ +c+n+ ch+s++ v+vt+C ++g++ +C+Y++ T100533_2 160 LTTIADFCRTPPLPCTNSpsMCSCHNSTHDVNVTDCFASTGTRPLHCHYQK 210 5789************9887889********************999***95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7960.81 // Query: T100533_3 [L=1447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 22.3 0.0 0.00028 21.3 0.0 1.5 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.0 1.7e-08 0.00028 6 46 .. 114 158 .. 110 159 .. 0.87 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 1.7e-08 HHHHHB-TTSSS...SSCCHHHHHHHHT.TCTSSST-SEEEEEES CS RnaseA 6 Ferqhvdskksk...tsekyCnkamkrr.nmtkkrCkkvntfihe 46 F+++h+d+++s +++yC+ +m+ r +++++C++++tfih T100533_3 114 FSTRHLDNPRSWvprGHHRYCDVMMRCRwLIYRGKCEQIHTFIHR 158 999*****99878899999*******9934566**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7665.96 // Query: T001579_1 [L=2547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 691 (0.042377); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.59 # Mc/sec: 12350.06 // Query: T001579_2 [L=2547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 848 (0.0520054); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:00.60 # Mc/sec: 12144.22 // Query: T001579_3 [L=2546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 580 (0.0355697); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.60 # Mc/sec: 12139.46 // Query: T062855_1 [L=2000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1799 (0.110327); expected 326.1 (0.02) Passed bias filter: 569 (0.0348951); expected 326.1 (0.02) Passed Vit filter: 329 (0.0201766); expected 16.3 (0.001) Passed Fwd filter: 84 (0.00515148); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.47u 0.42s 00:00:02.89 Elapsed: 00:00:00.76 # Mc/sec: 7528.50 // Query: T062855_2 [L=2000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1976 (0.121182); expected 326.1 (0.02) Passed bias filter: 644 (0.0394947); expected 326.1 (0.02) Passed Vit filter: 384 (0.0235496); expected 16.3 (0.001) Passed Fwd filter: 83 (0.00509015); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.65u 0.41s 00:00:03.06 Elapsed: 00:00:00.76 # Mc/sec: 7528.50 // Query: T062855_3 [L=1999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1774 (0.108794); expected 326.1 (0.02) Passed bias filter: 562 (0.0344658); expected 326.1 (0.02) Passed Vit filter: 314 (0.0192567); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.43s 00:00:02.69 Elapsed: 00:00:00.74 # Mc/sec: 7728.11 // Query: T317440_1 [L=2911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.61 # Mc/sec: 13652.26 // Query: T317440_2 [L=2911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 13432.06 // Query: T317440_3 [L=2910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 13875.03 // Query: T335616_1 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-74 247.5 87.4 1e-13 51.5 5.5 10.8 10 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 3.6 1.4e-12 2.3e-08 48 95 .. 160 207 .. 158 215 .. 0.85 2 ! 4.4 4.5 0.0023 38 5 63 .. 197 256 .. 195 259 .. 0.78 3 ! 37.0 1.8 1.9e-13 3.1e-09 44 99 .. 286 341 .. 277 342 .. 0.89 4 ! 51.5 5.5 6.1e-18 1e-13 56 121 .. 325 390 .. 324 393 .. 0.95 5 ! 15.1 0.4 1.1e-06 0.019 94 117 .. 389 412 .. 389 416 .. 0.86 6 ! 28.3 3.9 9.5e-11 1.6e-06 10 36 .. 412 438 .. 410 444 .. 0.94 7 ! 47.5 6.9 1.1e-16 1.8e-12 33 93 .. 484 544 .. 478 551 .. 0.89 8 ! 5.9 0.1 0.00081 13 79 99 .. 556 576 .. 554 578 .. 0.88 9 ! 41.3 1.5 9.1e-15 1.5e-10 51 97 .. 581 626 .. 580 633 .. 0.90 10 ! 37.1 2.9 1.8e-13 2.9e-09 80 117 .. 832 869 .. 823 877 .. 0.88 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 1.4e-12 DUF4575 48 rlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrg 95 r g +p geegl lsprlag asp cdg pksq ++g p g T335616_1 160 RWGGPKPGGEEGLALSPRLAGGASPLCDGGPKSQWGNQGLALSPCLAG 207 789999****************************99998766665554 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0023 DUF4575 5 eglalspllpgvppppamgv..prdrggrgagsqstprggcllpprlgsqqpa.geeglvls 63 +glalsp l g p g p g + ggcl r gs +p geegl ls T335616_1 197 QGLALSPCLAGGASPLRWGY*qPGVEEGIALSPH--SCGGCLPLLRSGSSEPGgGEEGLALS 256 6999999999999999999554877666555544..469**9999***999963699*9998 PP == domain 3 score: 37.0 bits; conditional E-value: 1.9e-13 DUF4575 44 llpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppp 99 +l +g +p geegl lsprlag as cdg pksq ++g gvppp T335616_1 286 ILGSTIGGPKPVGEEGLALSPRLAGGASHLCDGGPKSQWGNQGLALNLCLGGVPPP 341 567789999********************************998777788899998 PP == domain 4 score: 51.5 bits; conditional E-value: 6.1e-18 DUF4575 56 geeglvlsprlagdaspccdgspksqgvkrg.wlsvptsrgvppppaigvliarggrgagsqslprg 121 g++gl l+ l g p cdg +sqg krg svpt g+ppppa+gvl +rggrg+gsqslprg T335616_1 325 GNQGLALNLCLGGVPPPSCDGGTNSQGRKRG*L-SVPTLVGLPPPPAMGVLRTRGGRGTGSQSLPRG 390 789*************************99777.9*******************************9 PP == domain 5 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4575 94 rgvppppaigvliarggrgagsqs 117 rg ppa+gvl arggrg sqs T335616_1 389 RGGASPPAMGVLTARGGRGDSSQS 412 6778999************99998 PP == domain 6 score: 28.3 bits; conditional E-value: 9.5e-11 DUF4575 10 spllpgvppppamgvprdrggrgagsq 36 spl gvppppamgvpr rggrg+gsq T335616_1 412 SPLSWGVPPPPAMGVPRARGGRGTGSQ 438 89************************8 PP == domain 7 score: 47.5 bits; conditional E-value: 1.1e-16 DUF4575 33 agsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvpts 93 prggcl r gs +p geegl lsp lag as dg pks+g krg lsvp s T335616_1 484 LALSPHPRGGCLPLLRWGSPEPGGEEGLALSPCLAGGASAPSDGGPKSKGGKRGSLSVPVS 544 455568*****************************************************85 PP == domain 8 score: 5.9 bits; conditional E-value: 0.00081 DUF4575 79 ksqgvkrgwlsvptsrgvppp 99 k g +rg ++vp+srg+ppp T335616_1 556 KEPGEERGRFAVPASRGLPPP 576 567889**************9 PP == domain 9 score: 41.3 bits; conditional E-value: 9.1e-15 DUF4575 51 sqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvp 97 sq+p geegl lsprlag asp cdgspksqg rg s p+ g p T335616_1 581 SQEPGGEEGLALSPRLAGGASPHCDGSPKSQGG-RGDGSQPSQNGGP 626 89*****************************95.7888888877766 PP == domain 10 score: 37.1 bits; conditional E-value: 1.8e-13 DUF4575 80 sqgvkrgwlsvptsrgvppppaigvliarggrgagsqs 117 sq krgwlsvp+ rgv p p +gv arggrgagsq T335616_1 832 SQWGKRGWLSVPALRGVSPHPVMGVTRARGGRGAGSQP 869 8899********************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 7635.82 // Query: T335616_2 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-70 233.5 88.8 1.1e-20 74.0 10.3 9.5 9 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.9 4.9e-12 7.9e-08 74 110 .. 159 195 .. 153 197 .. 0.93 2 ! 15.8 1.8 6.6e-07 0.011 82 102 .. 194 214 .. 192 224 .. 0.84 3 ! 11.7 0.2 1.2e-05 0.2 64 96 .. 229 261 .. 226 268 .. 0.82 4 ! 24.1 1.1 1.8e-09 3e-05 82 110 .. 297 325 .. 291 327 .. 0.90 5 ! 30.0 5.9 2.8e-11 4.6e-07 81 129 .] 323 371 .. 321 371 .. 0.86 6 ! 29.5 5.6 4e-11 6.5e-07 3 63 .. 378 438 .. 376 441 .. 0.94 7 ! 74.0 10.3 7e-25 1.1e-20 44 118 .. 468 542 .. 459 544 .. 0.93 8 ! 69.7 16.3 1.4e-23 2.3e-19 15 113 .. 519 616 .. 519 627 .. 0.92 9 ! 24.3 0.6 1.6e-09 2.6e-05 29 66 .. 834 871 .. 832 886 .. 0.84 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 4.9e-12 DUF4575 74 cdgspksqgvkrgwlsvptsrgvppppaigvliargg 110 dg sq kr wlsvp+srgvppp a+gvl a gg T335616_2 159 NDGGVLSQEGKRVWLSVPASRGVPPPSAMGVLRASGG 195 589999****************************999 PP == domain 2 score: 15.8 bits; conditional E-value: 6.6e-07 DUF4575 82 gvkrgwlsvptsrgvppppai 102 g rgwlsvp+srgvppp T335616_2 194 GGTRGWLSVPASRGVPPPCDG 214 678**************9765 PP == domain 3 score: 11.7 bits; conditional E-value: 1.2e-05 DUF4575 64 prlagdaspccdgspksqgv.krgwlsvptsrgv 96 p l asp cd p+s+g kr wlsv r v T335616_2 229 PTLVVGASPSCDRGPQSRGAgKRVWLSVI-PRKV 261 788999************9769*****95.3445 PP == domain 4 score: 24.1 bits; conditional E-value: 1.8e-09 DUF4575 82 gvkrgwlsvptsrgvppppaigvliargg 110 kr wlsvp+srgvpp a+gvl a gg T335616_2 297 WGKRVWLSVPASRGVPPTSAMGVLRASGG 325 569***********************999 PP == domain 5 score: 30.0 bits; conditional E-value: 2.8e-11 DUF4575 81 qgvkrgwlsvptsrgvppppaigvliarggrgagsqslprgwsftp.lrw 129 g rgwls+ +s g pppa+gv arggrg sqs p w p lrw T335616_2 323 SGGTRGWLSISASGGCLPPPAMGVPTARGGRGDSSQSPP-SWGCLPlLRW 371 5788********************************977.5666662577 PP == domain 6 score: 29.5 bits; conditional E-value: 4e-11 DUF4575 3 rgeglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglvls 63 eglalsp l gvppp g + g rggcl r gs +p geegl ls T335616_2 378 GEEGLALSPCLAGVPPPLRWGYSQPGAEEGIALSPHSRGGCLPLLRWGSPEPGGEEGLALS 438 579*********************99999*99999************************98 PP == domain 7 score: 74.0 bits; conditional E-value: 7e-25 DUF4575 44 llpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppppaigvliarggrgagsqsl 118 +l +g +p g+ + p lag asp cdg p+sqg kr wlsvp+srgvppppa+gvl a+ggrga sqs T335616_2 468 ILGSTMGGPKPGGKRVWLSVPTLAGGASPSCDGGPQSQGGKRDWLSVPASRGVPPPPAMGVLRAKGGRGARSQSP 542 5677889999****999999*****************************************************95 PP == domain 8 score: 69.7 bits; conditional E-value: 1.4e-23 DUF4575 15 gvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwl.svptsrgvppppaigvliarggrga 113 gvppppamgv r +ggrga sqs r gcllp g++ + g sp gd+ p cd pksq krgwl p+srgvppp a+gv arg g T335616_2 519 GVPPPPAMGVLRAKGGRGARSQSPCREGCLLPCDEGAKSQGRKGGGSQSPP-RGDCLPHCDSGPKSQAGKRGWL*V-PASRGVPPPTAMGVPRARGEEGM 616 8***********************************998888888888875.6********************555.9******************9886 PP == domain 9 score: 24.3 bits; conditional E-value: 1.6e-09 DUF4575 29 ggrgagsqstprggcllpprl..gsqqpageeglvlsprl 66 ggrgagsqs p ggcl p l gsq+p geegl l+ + T335616_2 834 GGRGAGSQSPPCGGCL--PTL*wGSQEPEGEEGLALNHHE 871 9**************7..56555***********998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 7367.89 // Query: T335616_3 [L=1468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-75 250.8 96.6 8.7e-17 61.4 10.1 11.3 11 DUF4575 Domain of unknown function (DUF4575) Domain annotation for each model (and alignments): >> DUF4575 Domain of unknown function (DUF4575) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 2.8 1.9e-06 0.03 28 51 .. 166 189 .. 165 189 .. 0.90 2 ! 9.9 1.0 4.6e-05 0.76 29 48 .. 194 212 .. 192 214 .. 0.81 3 ! 12.4 0.1 7.8e-06 0.13 99 117 .. 210 228 .. 209 233 .. 0.84 4 ! 14.4 2.0 1.9e-06 0.03 10 36 .. 228 255 .. 226 260 .. 0.74 5 ! 16.9 1.3 3e-07 0.0049 29 51 .. 297 319 .. 274 319 .. 0.90 6 ! 61.4 10.1 5.4e-21 8.7e-17 29 103 .. 324 398 .. 322 407 .. 0.92 7 ! 25.6 0.2 6.1e-10 1e-05 64 97 .. 412 444 .. 409 451 .. 0.86 8 ! 3.5 0.5 0.0044 71 106 119 .. 476 489 .. 472 491 .. 0.66 9 ! 57.3 16.0 9.9e-20 1.6e-15 2 73 .. 480 550 .. 478 561 .. 0.86 10 ! 41.3 5.5 9e-15 1.5e-10 4 61 .. 560 617 .. 556 624 .. 0.92 11 ! 43.5 0.1 1.9e-15 3.1e-11 50 93 .. 828 871 .. 819 896 .. 0.92 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.9e-06 DUF4575 28 rggrgagsqstprggcllpprlgs 51 r grg+gsqs prggcl p r gs T335616_3 166 RRGRGSGSQSPPRGGCLPPLRWGS 189 789*************99999987 PP == domain 2 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4575 29 ggrgagsqstprggcllppr 48 g gagsqs prggcl pp T335616_3 194 GEPGAGSQSLPRGGCL-PPA 212 5679***********7.554 PP == domain 3 score: 12.4 bits; conditional E-value: 7.8e-06 DUF4575 99 ppaigvliarggrgagsqs 117 ppa+gvl arggrg sqs T335616_3 210 PPAMGVLTARGGRGDSSQS 228 8999999999999999998 PP == domain 4 score: 14.4 bits; conditional E-value: 1.9e-06 DUF4575 10 spllpgvppppamgvprdrg.grgagsq 36 spll vppppa+gv r g grg+gsq T335616_3 228 SPLLWWVPPPPAIGVLRAGGrGRGSGSQ 255 8899999999999998864445555554 PP == domain 5 score: 16.9 bits; conditional E-value: 3e-07 DUF4575 29 ggrgagsqstprggcllpprlgs 51 ggrg+gsqs prggcl p r gs T335616_3 297 GGRGSGSQSPPRGGCLPPLRWGS 319 89**************9999987 PP == domain 6 score: 61.4 bits; conditional E-value: 5.4e-21 DUF4575 29 ggrgagsqstprggcllpprlgsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvptsrgvppppaig 103 g gagsqs prgg+ r g qqp eeg+ lsp+ g asp cdg pk+ g kr wlsvp+srg pp g T335616_3 324 GEPGAGSQSLPRGGASPLLRWGYQQPGAEEGIALSPHPRGVASPSCDGGPKNPGGKRDWLSVPASRGCLPPCDGG 398 6679***********9999*************************************************9997655 PP == domain 7 score: 25.6 bits; conditional E-value: 6.1e-10 DUF4575 64 prlagdaspccdgspksqgvkrgwlsvptsrgvp 97 p l g asp cdg p+sqg kr wlsv r vp T335616_3 412 PTLVGGASPSCDGGPQSQGGKRDWLSVI-PRKVP 444 89************************95.34554 PP == domain 8 score: 3.5 bits; conditional E-value: 0.0044 DUF4575 106 iarggrgagsqslp 119 ++rggrg+gsqs p T335616_3 476 LSRGGRGSGSQSPP 489 46777777777655 PP == domain 9 score: 57.3 bits; conditional E-value: 9.9e-20 DUF4575 2 grgeglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgs.qqpageeglvlsprlagdaspc 73 grg g + sp gvppppamgvpr rggrg+gsqs prggcl p r gs +q geegl lspr+ as T335616_3 480 GRGSG-SQSPPSRGVPPPPAMGVPRARGGRGTGSQSLPRGGCLRPQRWGS*EQ-RGEEGLALSPRVVRGASSP 550 67777.4688899************************************9987.49*********98666543 PP == domain 10 score: 41.3 bits; conditional E-value: 9e-15 DUF4575 4 geglalspllpgvppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglv 61 g+g sp l g+ p a+ vpr r grg gs+s prggcl p r sq+p g+ g + T335616_3 560 GKGEVRSPRLAGIASPTAIVVPRARRGRGVGSESPPRGGCLPPLRWESQEPGGKRGWI 617 678899************************************************9976 PP == domain 11 score: 43.5 bits; conditional E-value: 1.9e-15 DUF4575 50 gsqqpageeglvlsprlagdaspccdgspksqgvkrgwlsvpts 93 g +p geegl lsprlag sp cdg ksq krgwls t T335616_3 828 GRPKPVGEEGLALSPRLAGGVSPPCDGGHKSQRGKRGWLSTTTK 871 5678************************************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 7635.82 // Query: T191691_1 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 5175.50 // Query: T191691_2 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 5083.08 // Query: T191691_3 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 5266.05 // Query: T274832_1 [L=3684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-25 87.6 0.3 2.8e-13 49.8 0.1 2.3 2 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.4e-24 85.5 0.6 3.5e-24 84.2 0.6 1.7 1 RVT_thumb Reverse transcriptase thumb domain 1.7e-20 73.0 0.0 3.7e-20 71.9 0.0 1.5 1 RVP Retroviral aspartyl protease 1.8e-18 66.7 0.0 3.4e-18 65.8 0.0 1.5 1 rve Integrase core domain 4.2e-14 52.0 0.2 9.1e-14 50.9 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 1.9e-12 47.4 0.2 4e-12 46.3 0.2 1.5 1 Gag_p24 gag gene protein p24 (core nucleocapsid prot 2.2e-12 47.1 0.5 4.3e-12 46.2 0.5 1.4 1 GP41 Retroviral envelope protein 7e-11 42.4 0.1 7e-11 42.4 0.1 1.7 1 RNase_H RNase H 8.3e-09 35.1 2.2 1.8e-08 34.0 2.2 1.5 1 G-patch G-patch domain 0.00065 19.5 1.5 0.0024 17.7 1.5 2.1 1 Integrase_Zn Integrase Zinc binding domain 0.0022 17.1 3.1 0.0051 15.9 3.1 1.6 1 IN_DBD_C Integrase DNA binding domain ------ inclusion threshold ------ 0.16 12.4 0.0 0.35 11.3 0.0 1.5 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.8 0.1 2.1e-16 2.8e-13 84 219 .. 1011 1122 .. 999 1125 .. 0.88 2 ! 35.7 0.0 4.1e-12 5.6e-09 107 221 .. 2436 2542 .. 2423 2542 .. 0.87 Alignments for each domain: == domain 1 score: 49.8 bits; conditional E-value: 2.1e-16 BB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH.. CS RVT_1 84 pleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee.. 179 pl+e++++ +af++p vn+ +s +++ +k lpqG+ +SP++++ ++ +++++ +k++++++++rY+D il+++ ++e T274832_1 1011 PLAEQDYERFAFTIP------------------AVNNLQSDKHFHWKMLPQGMLNSPTICQTYVGQAIEPTHKKFSNCYIIRYIDNILCAAPTREIll 1090 677888888888888..................4566699****************************************************988755 PP .HHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 180 .lqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + ++++++ ++ ++l i+ +K++ + +++ yLG T274832_1 1091 *C---YDHLQNSISHANLIIALDKIQTT------TPYSYLG 1122 54...5677899999*************......8999999 PP == domain 2 score: 35.7 bits; conditional E-value: 4.1e-12 .................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 107 sflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204 s+ + ++ + ++++ + +y+ + lp G v+S +l+ ++++ l +++ +++tl++ + Di+++ s++e+ + l+ ++++l g +in +K++ T274832_1 2436 SCPKPHQKKFAFSWQ--GSQYTFTILPKGYVNSTALCHNLIQRYLDHFSL-PQDITLVHHIGDIMLIGASEQEVANTLDLLVRYLHARGWEINLTKIQ 2530 333334456667776..899****************************98.69********************************************* PP EE.....ESSEEETTEE CS RVT_1 205 lvlfsgkseevkyLGvt 221 s++vk+LGv+ T274832_1 2531 EP-----STSVKFLGVQ 2542 **.....9*******95 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.2 0.6 2.5e-27 3.5e-24 1 66 [] 1132 1196 .. 1132 1196 .. 0.96 Alignments for each domain: == domain 1 score: 84.2 bits; conditional E-value: 2.5e-27 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 pqk++++rd+lktLNDfQkLlgdINWi+ lgi+t+ +++LF+iL Gd++ltsp qL +eA+++L+ T274832_1 1132 PQKVTIHRDQLKTLNDFQKLLGDINWIQSALGIPTYAISNLFSILIGDPSLTSPQQL-KEAQAELQ 1196 6********************************************************.67888886 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.9 0.0 2.7e-23 3.7e-20 12 99 .. 752 838 .. 750 839 .. 0.97 Alignments for each domain: == domain 1 score: 71.9 bits; conditional E-value: 2.7e-23 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +gk+i+al+DtGAd+++is +++P wp+ + ++ G+g+a e++qs++i+++ + + + g+++p+i++ +p+nl+GrdlLq++g++ T274832_1 752 SGKKIKALVDTGADISIISLQHWPSMWPIPPVRFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITS-VPINLWGRDLLQQWGAQ 838 6899******************************************************************.**************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.8 0.0 2.5e-21 3.4e-18 5 117 .. 1526 1632 .. 1523 1632 .. 0.90 Alignments for each domain: == domain 1 score: 65.8 bits; conditional E-value: 2.5e-21 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 ++lwq+D+t+++++++ ay+++ id+fs +++a a ++ +a + +ll+ + g p+ v +Dn+s yts+a+++f + +i++ + p+++ T274832_1 1526 NSLWQMDITYVPSFGKL--AYVHICIDTFSQFVWAPAKWES-SAYVKWHLLK-CFTVMGI--PDSVKTDNASGYTSQALATFFSVRNIKHITGIPYNS 1617 89**********66555..****************999999.6666666666.7888888..************************************ PP rve 103 qdnGkvErfnrtlkd 117 q +++vEr+n lk+ T274832_1 1618 QGQAIVERMNLSLKQ 1632 **********99986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.9 0.2 6.7e-17 9.1e-14 2 84 .] 87 169 .. 86 169 .. 0.90 Alignments for each domain: == domain 1 score: 50.9 bits; conditional E-value: 6.7e-17 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee.GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevLd 84 ++ +l++l +Ll++ G+kv + + l+++++ ve++cPWF + Gt+++e+W+ vg+ lk +a + g e ip++v+s+w+lir++L+ T274832_1 87 HKAYLSLLWKLLRKGGVKVIT-S*LTQLFSAVEKYCPWF-LD*GTMNVEVWENVGSTLK-KAYKDGaEDIPITVWSVWALIRSALE 169 678****************75.78899************.6999***************.5555666***************9985 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.3 0.2 2.9e-15 4e-12 8 113 .. 302 411 .. 301 418 .. 0.87 Alignments for each domain: == domain 1 score: 46.3 bits; conditional E-value: 2.9e-15 Gag_p24 8 kkaveqygpsspeviqlidala..eqalpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleq 102 k+a++qygp+sp+v+ l++++a +q++p d+ l+ a+ + ++l+ +++w ee + ++v+ a+++i+i++d+llg + q+ ++ +++eq T274832_1 302 KQAINQYGPGSPFVMRLLKNVAvfSQMTPTDWGALT*AClTPAQFLQfKTWWAEEGSTQAAHNVQ-AQPQINITADQLLGVSGWAGLDAQVVMQDDAIEQ 400 899****************98855799********99885889999999******9999555554.446************99888777777777***** PP Gag_p24 103 vrrlillalek 113 +r+++++a+ek T274832_1 401 LRAVCIRAWEK 411 *********98 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.2 0.5 3.2e-15 4.3e-12 27 168 .. 2080 2217 .. 2073 2219 .. 0.87 Alignments for each domain: == domain 1 score: 46.2 bits; conditional E-value: 3.2e-15 HHHHHHHHHHHHHHHHSSC.HH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHH CS GP41 27 letQeeidkklearvnale.evvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqek 122 + Q +id kl +++n l v+ lG+ v sl+ +++l+C n C+T+ yn++e +We +k hl+g ++sld++kl++++ ++++++ T274832_1 2080 WNSQTNIDLKLANQINDLR*I-VMWLGDRVSSLEYRIQLQCDWNTSDFCITPHLYNETEhEWEIIKRHLKGH--TGNLSLDIAKLKEQVFQASQAHLT 2174 57899999***9999998555.59**********************************************94..4589******************** PP HHHHHTCHHHHH.HHHHHGCHHHHHHHHH.HHHHHHHHHCHHHHHHH CS GP41 123 tlqeldkldklaqslannfkslnWvsyik.ltvliiavgvalrvvli 168 ++ + ++ a +++ ++nW++ k l+ +i ++++l++ ++ T274832_1 2175 LMPGTEVFEGAA----DGLAAINWLKRTKtLGGSVISMMIVLLIGVV 2217 ***877777777....8999999998765377889999999988654 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.4 0.1 5.1e-14 7e-11 4 141 .. 1343 1467 .. 1340 1469 .. 0.73 Alignments for each domain: == domain 1 score: 42.4 bits; conditional E-value: 5.1e-14 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +v+tD s++ g+a + +k + +++++ +++++aEL Avie+L a + +v +++DS+Yvv+ tq v++++ + + t+eq ++ T274832_1 1343 ENVFTDESSN-----GKASYSGSKS--KVFQTSY---TSAQKAELVAVIEVLTA--FEMSVDVISDSSYVVH-STQLVENAQLRFY--TDEQ--LMTl 1423 5678888866.....7777744433..4555555...6****************..999*************.8999999866555..5555..4441 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++l+ +++++ ++++h+++H + + +maD l+ a T274832_1 1424 lTQLQTAVRST--MYPIYITHIRAHISLpgplTAATQMADCLVATA 1467 23555555333..458*********988676755788999887765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 2.2 1.3e-11 1.8e-08 7 44 .. 852 889 .. 847 890 .. 0.95 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 1.3e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+GLGk+ qG + P++a+ + G+G+ T274832_1 852 HMMHEMGYVPGMGLGKNLQGLKKPLQAEGQNPHQGVGY 889 6***********************************98 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 1.5 1.7e-06 0.0024 1 24 [. 1471 1494 .. 1471 1507 .. 0.92 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 1.7e-06 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitre 24 Ak +H+l+H+N+ +L+++++it + T274832_1 1471 AKHFHNLTHVNTSGLKHRYSITQK 1494 89*******************964 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 3.1 3.8e-06 0.0051 5 49 .. 1689 1731 .. 1686 1732 .. 0.87 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 3.8e-06 EEE-SSTTS--EEEEEEEEEETTEEEE..E-SS.-EEEEEGGGEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikgrGavcvFPqdas.dikwvPeRlvrk 49 v w+d +++W +i+grG++cv + +++ +++w+P R +++ T274832_1 1689 VWWRDPITKSWE--IGKIIWGRGYACV-SPGQN*QPIWIPSRHLKP 1731 779999999998..5579*********.8888899*******9996 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00026 0.35 7 25 .. 753 771 .. 750 781 .. 0.90 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00026 TEEEEEEEETT-SS-EEEH CS gag-asp_proteas 7 gkpvkflvDTGAsstiise 25 gk++k+lvDTGA+ +iis T274832_1 753 GKKIKALVDTGADISIISL 771 99***************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.62 # Mc/sec: 16998.87 // Query: T274832_2 [L=3684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-27 94.2 0.0 1.2e-26 93.7 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 9.7e-20 70.4 0.0 3.1e-18 65.6 0.0 2.2 2 dUTPase dUTPase 7e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.7 0.0 2.2e-30 1.2e-26 112 199 .. 410 497 .. 400 498 .. 0.94 Alignments for each domain: == domain 1 score: 93.7 bits; conditional E-value: 2.2e-30 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraCqgvggav 199 +ki + g++ +s + ++QGpkEpy df+a l+++l+k++ad +a++++++ La++NANpeCq+ l+p+ +++ l d+++aC+g gg T274832_2 410 KKITSGGEQYPSSSAVKQGPKEPYADFIAQLQESLKKVIADSAAQHIVLRLLAFDNANPECQATLRPITAKAHLVDYIKACDGFGGNL 497 7999999*****************************************************************************9975 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.6 0.0 5.6e-22 3.1e-18 5 127 .. 612 726 .. 608 731 .. 0.87 2 ? 2.4 0.0 0.02 1.1e+02 54 110 .. 3233 3289 .. 3232 3303 .. 0.89 Alignments for each domain: == domain 1 score: 65.6 bits; conditional E-value: 5.6e-22 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 + + + +sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l RS+l++kg+ v +gvidsdy+Ge+++v+ +t+ + k g+Ri qL++++ T274832_2 612 CLSPTTTGSAAVDLCCTKAVSLLPgEPPQKVPTGVCGPLPAGTVGLLLSRSSLNLKGVQVQTGVIDSDYNGEIQIVI--STSVPWKAGPGERISQLLIVP 709 6788999*****************7789*******************************************888887..68899***************9 PP BECGEEEEESSTTTESSBTTXTTT CS dUTPase 104 iltaeleevetlkatergeggfgs 127 +++ + k++ +++ggfgs T274832_2 710 YVE--M-----GKSETKQTGGFGS 726 998..1.....1334445555555 PP == domain 2 score: 2.4 bits; conditional E-value: 0.02 HHHHHHHEEEEEEEEETTB.TSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEE CS dUTPase 54 Sglaakglivvpgvidsdy.rGevkvvlfnltkkdvkikkgdRiAqLifariltaele 110 S a+kg++v+ gvi dy + +++ l n +k++ k+gd + +L++ ++ ++++ T274832_2 3233 SQQAKKGVTVLAGVIYPDY*EE-ISLLLHNGGKEEYAWKTGDPLGRLLVLPCSVIKVN 3289 56799*************9998.9***************************9885554 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.0 2e-08 0.00011 2 84 .. 957 1011 .. 955 1014 .. 0.92 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 2e-08 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvp 84 +Kk+ g++R++ +d++a+n++i++ + qpg++++ + +k++ l+ +Dlk++F+++p T274832_2 957 KKKS-GKWRML----TDLRAINSVIQS---------MGALQPGLPSPAMI--------------PKNWPLIVMDLKDCFFTIP 1011 5666.*****7....7***********.........***********777..............9****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.72 # Mc/sec: 14637.91 // Query: T274832_3 [L=3683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-06 27.6 19.3 4.9e-06 26.0 8.8 3.2 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00051 19.9 6.8 0.0037 17.1 6.2 3.0 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.038 14.0 0.0 0.062 13.4 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.6 2.7 0.0021 12 2 19 .. 520 537 .. 519 542 .. 0.93 2 ! 26.0 8.8 8.9e-10 4.9e-06 3 35 .. 556 588 .. 554 589 .. 0.90 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0021 --B-TTT-SSBS-TTT-- CS zf-CCHC_5 2 pglCpRCkkgkHwardCh 19 pg C C+k H +++C+ T274832_3 520 PGACFNCGKHGHTKKECR 537 899**************8 PP == domain 2 score: 26.0 bits; conditional E-value: 8.9e-10 -B-TTT-SSBS.-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 3 glCpRCkkgkH.wardChskfdknGnpLsanegr 35 + Cp+C kgkH ++Ch kfdk+Gnp s+n r T274832_3 556 EICPKCRKGKH*A-NQCHCKFDKDGNPISGNAMR 588 68********998.8***************9866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 6.2 6.9e-07 0.0037 2 18 .] 522 538 .. 521 538 .. 0.93 2 ? -2.6 0.0 1.2 6.6e+03 9 15 .. 2591 2597 .. 2590 2597 .. 0.91 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 6.9e-07 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T274832_3 522 ACFNCGKHGHTKKECRK 538 7**************86 PP == domain 2 score: -2.6 bits; conditional E-value: 1.2 SSSTTTT CS zf-CCHC 9 pGHiard 15 pGH+++d T274832_3 2591 PGHLSSD 2597 8****98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 1.1e-05 0.062 8 87 .. 2799 2880 .. 2798 2903 .. 0.78 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.1e-05 EEEEE.ECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT...SCSEEEEEES-HHHHHHHHCCCHHHHHT CS RNase_H 8 tDGsc.lgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkal..ksdekvniytDSkYvvkgitqwvhrwkkn 87 tDGs+ + ++++ a++ + +r+ ++ +e + + +EL+A++ +++++ +++++v++yt S+ v +g+ w +w+k+ T274832_3 2799 TDGSS*Y-AGITRKWTALALQTLSRTSLKHRPEGKYSQCTELQAMHLVVQSA*kEEWPDVQLYTNSRAVANGLAGWSGTWEKH 2880 6666332.244567777554444677777777899***************8776999***********************653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.68 # Mc/sec: 15494.76 // Query: T155176_1 [L=2451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 10624.08 // Query: T155176_2 [L=2450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 10158.02 // Query: T155176_3 [L=2450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 10619.75 // Query: T090170_1 [L=5144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.43s 00:00:02.13 Elapsed: 00:00:00.79 # Mc/sec: 18627.99 // Query: T090170_2 [L=5144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.36s 00:00:02.13 Elapsed: 00:00:00.79 # Mc/sec: 18627.99 // Query: T090170_3 [L=5144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.43s 00:00:02.18 Elapsed: 00:00:00.77 # Mc/sec: 19111.83 // Query: T267909_1 [L=265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1547.18 // Query: T267909_2 [L=265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.56 # Mc/sec: 1330.04 // Query: T267909_3 [L=264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.59 # Mc/sec: 1280.10 // Query: T290883_1 [L=2824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 886 (0.0543358); expected 326.1 (0.02) Passed bias filter: 251 (0.0153931); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.38s 00:00:02.83 Elapsed: 00:00:00.85 # Mc/sec: 9504.69 // Query: T290883_2 [L=2824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00025 19.7 3.2 0.0024 16.5 0.0 2.7 3 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.9 0.093 1.5e+03 476 489 .. 1224 1237 .. 1223 1239 .. 0.90 2 ! 2.9 0.0 0.0019 31 341 393 .. 1753 1799 .. 1736 1803 .. 0.77 3 ! 16.5 0.0 1.5e-07 0.0024 442 499 .. 1867 1924 .. 1862 1946 .. 0.83 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.093 HHHHTS-------- CS TLV_coat 476 CaALkEeCCFyadk 489 CaA CCFy +k T290883_2 1224 CAAHHQDCCFYSEK 1237 99*********876 PP == domain 2 score: 2.9 bits; conditional E-value: 0.0019 XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 341 vfacntgltpclstallnlttdlCvlaellPdislisgeyiyaidepatRvkR 393 ++ c+ l +l+n++++ C l++l +++l + ++ + + R R T290883_2 1753 WWYCGGPLL----DTLPNNWSGTCALVQLAIPFTLTFHQ--PKEGKIRHRKAR 1799 677877776....89**************9888887666..455555555555 PP == domain 3 score: 16.5 bits; conditional E-value: 1.5e-07 HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHH CS TLV_coat 442 esIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiak 499 ++++ ++l ++++ QN+ LD++ +e+G +C +k +CC ++ + si+k T290883_2 1867 DAVNGIAEQLGATSQMAWQNKIALDMIVAERGVVCIIIKTQCCTFIPNNTAPNGSIRK 1924 68899999***********************************887777777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1454 (0.0891696); expected 326.1 (0.02) Passed bias filter: 402 (0.0246535); expected 326.1 (0.02) Passed Vit filter: 276 (0.0169263); expected 16.3 (0.001) Passed Fwd filter: 61 (0.00374095); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.51u 0.44s 00:00:03.95 Elapsed: 00:00:01.05 # Mc/sec: 7694.27 // Query: T290883_3 [L=2823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 804 (0.049307); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 111 (0.00680731); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.39s 00:00:02.44 Elapsed: 00:00:00.81 # Mc/sec: 9970.52 // Query: T221916_1 [L=1959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 11.8 12.1 0.16 11.8 0.6 2.5 2 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 5.0 0.0034 56 45 71 .. 1443 1470 .. 1428 1491 .. 0.57 2 ? 11.8 0.6 1e-05 0.16 33 71 .. 1502 1540 .. 1491 1545 .. 0.93 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.0034 Lamprin 45 ygglgyg.glgvaglgvaglgygglgyp 71 y g+ +g g g+ glgva lg+ lg+ T221916_1 1443 YSGVVWGvGCGFQGLGVAVLGWAWLGWT 1470 4444443345555555555555555443 PP == domain 2 score: 11.8 bits; conditional E-value: 1e-05 Lamprin 33 tgflghpvgglgygglgygglgvaglgvaglgygglgyp 71 g+ gh l + g + gvagl va l glgy T221916_1 1502 RGWTGHGCTQLCWAGCDWAWCGVAGLCVAALSCVGLGYC 1540 699**********************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.78 # Mc/sec: 7185.08 // Query: T221916_2 [L=1959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 10007.80 // Query: T221916_3 [L=1959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.1 8.9 0.036 13.9 8.9 1.6 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 8.9 2.2e-06 0.036 34 75 .. 1459 1500 .. 1449 1514 .. 0.85 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 2.2e-06 Lamprin 34 gflghpvgglgygglgygglgvaglgvaglgygglgypgaal 75 g +g v gl lg+ lg+aglgv g gy glg g+ + T221916_3 1459 GCVGLGVAGLDTAELGWAWLGWAGLGVVGHGYVGLGVAGCGV 1500 788999******************************998654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.67 # Mc/sec: 8364.73 // Query: T111293_1 [L=5495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.42s 00:00:02.19 Elapsed: 00:00:00.80 # Mc/sec: 19650.33 // Query: T111293_2 [L=5495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:00.76 # Mc/sec: 20684.55 // Query: T111293_3 [L=5494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.35s 00:00:02.00 Elapsed: 00:00:00.69 # Mc/sec: 22778.84 // Query: T144141_1 [L=4732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.74 # Mc/sec: 18293.85 // Query: T144141_2 [L=4732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4732 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.40s 00:00:01.99 Elapsed: 00:00:00.78 # Mc/sec: 17355.70 // Query: T144141_3 [L=4731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.31s 00:00:01.75 Elapsed: 00:00:00.66 # Mc/sec: 20506.95 // Query: T157133_1 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.70 # Mc/sec: 2582.92 // Query: T157133_2 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 2916.20 // Query: T157133_3 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3166.99 // Query: T379586_1 [L=8783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-34 119.6 1.8 2.1e-34 118.9 1.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.016 14.6 0.0 0.025 14.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 118.9 1.8 2.5e-38 2.1e-34 11 200 .. 8209 8409 .. 8206 8434 .. 0.90 Alignments for each domain: == domain 1 score: 118.9 bits; conditional E-value: 2.5e-38 E......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET... CS RVT_1 11 pisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkl 101 pisl+++d k+lnk++a + ++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l++l++++++++ T379586_1 8209 PISLMNIDAKILNKILAn*iQ---QHIKKLIHHDQVGFIPGMQGWFNI*ksiNVIQHINRTKDKNHTIISIDAEKAFDKIQQRFMLKTLNKLGIDETY 8303 8**************964434...688888*********************99999999999999********************************* PP ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHH CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleavee 189 +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPll n++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ +++ T379586_1 8304 LKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLLNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLQNpIVSAQNLLKLISN 8401 ********************99*********************************99***************************55669999988887 PP HHHHTT--BEG CS RVT_1 190 wlkesglkinp 200 + l+i++ T379586_1 8402 FS---SLRIQN 8409 74...344444 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 3.1e-06 0.025 138 181 .. 666 709 .. 659 709 .. 0.94 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 3.1e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f rl + r++t dp+ + + + + fi+qsa+di+ T379586_1 666 KNPAQFTARLAATLRHFTALDPKRSKGRLILNIHFITQSAPDIK 709 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.48u 0.39s 00:00:02.87 Elapsed: 00:00:00.97 # Mc/sec: 25903.78 // Query: T379586_2 [L=8783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 28.2 0.0 2.8e-06 27.4 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.012 15.7 0.0 0.018 15.1 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 3.5e-10 2.8e-06 7 100 .. 866 954 .. 861 955 .. 0.85 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 3.5e-10 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEE.EEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqska.ievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ ++gk + +l+ t +++ ++ + P + a+ ++ Gi g+ ++ ++ +l ++ f + s+l+++++pv+llGr +L+kl + L T379586_2 866 VTLTMEGKSVPFLINTESTHSTLPSFQGPVS----LASITVVGIDGQASKPLKTPqLWCQLRQHSFMH--SFLVISTCPVPLLGRHILTKLSASL 954 67788899***********************....************976666650444455555555..*********************9988 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 2.2e-06 0.018 39 118 .. 1458 1535 .. 1456 1536 .. 0.84 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 2.2e-06 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 a+++ +e+++ ++ +l ++ +f p + sDng++++s+ +++ + l i+ + p+ p + kvE + ++lk++ T379586_2 1458 AFPTGSEKATAVISSVLSDIIPQFSL--PTSIQSDNGRAFISQISQAVFQALSIQCNLYIPYGPPSSRKVEWTKGLLKTH 1535 67788895555555666666666666..*******************************************999999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.46u 0.39s 00:00:02.85 Elapsed: 00:00:00.88 # Mc/sec: 28553.03 // Query: T379586_3 [L=8782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.3 9.1 11.9 0.54 10.3 6.3 2.7 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 6.3 3.3e-05 0.54 2 16 .. 778 792 .. 777 793 .. 0.95 2 ? 0.9 0.3 0.031 5e+02 11 17 .. 809 815 .. 809 816 .. 0.93 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 3.3e-05 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +Cy+C++ GH+a++C T379586_3 778 ACYKCQKCGHQAKEC 792 7************** PP == domain 2 score: 0.9 bits; conditional E-value: 0.031 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T379586_3 809 HWKSDCP 815 ******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.60u 0.47s 00:00:03.07 Elapsed: 00:00:01.08 # Mc/sec: 23262.79 // Query: T030591_1 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 2299.88 // Query: T030591_2 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 1988.03 // Query: T030591_3 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.66 # Mc/sec: 1777.18 // Query: T035079_1 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.55 # Mc/sec: 2189.84 // Query: T035079_2 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.086 13.4 4.3 0.19 12.3 4.3 1.6 1 PLA2_inh Phospholipase A2 inhibitor 0.19 12.3 5.3 0.36 11.4 5.3 1.5 1 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> PLA2_inh Phospholipase A2 inhibitor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 4.3 2.3e-05 0.19 2 55 .. 79 133 .. 78 137 .. 0.89 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.3e-05 PLA2_inh 2 sCeiCvnl.GkdCegykeeCdsneDaCvtvllevssaplslrlihknCfssdlCk 55 +C C ++ G++C+++ + C++++ +C ++ + + + k C +dlCk T035079_2 79 KCPTCFAVqGRKCDTELKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLCK 133 699998655*********************98777777789999**********8 PP >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 5.3 4.4e-05 0.36 1 52 [. 80 132 .. 80 153 .. 0.93 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 4.4e-05 EEEEEEBTTTBCCCC.EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGG CS UPAR_LY6 1 CysClgessesClpe.veCpeadsvCvsatlklqagnlettlvvkgCaressc 52 C++C ++ +C +e + C+ ++ C++ + + g ++ + +k C+++ c T035079_2 80 CPTCFAVQGRKCDTElKWCAADKIKCIEFSGIINTGIRDVAIEMKRCTQADLC 132 ***************99********************************9999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 2361.59 // Query: T035079_3 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.70 # Mc/sec: 1716.50 // Query: T051125_1 [L=3056] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-05 24.9 0.0 5 6.8 0.0 4.2 4 DUF3060 Protein of unknown function (DUF3060) ------ inclusion threshold ------ 0.15 12.4 6.4 7.4e+02 0.6 6.4 4.0 1 DUF296 Domain of unknown function (DUF296) Domain annotation for each model (and alignments): >> DUF3060 Protein of unknown function (DUF3060) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.9 0.0 0.0049 40 8 56 .. 313 362 .. 311 364 .. 0.87 2 ! 3.7 0.0 0.0057 46 3 56 .. 371 425 .. 365 427 .. 0.78 3 ! 6.8 0.0 0.00061 5 7 56 .. 429 479 .. 423 481 .. 0.92 4 ! 5.2 0.0 0.0019 16 7 48 .. 492 534 .. 482 539 .. 0.64 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.0049 DUF3060 8 vtltGeCeavtVsGssNtVtvd.svdkitvsGldNtVtyksGePkvsdtG 56 v+l G+ ++v+ G+ +V+++ ++ +++++G+ + V+ + + P vs +G T051125_1 313 VSLRGTFQHVSLRGTFPHVSLRgTFPHVSLRGTFQPVSLRGTFPHVSLRG 362 8999999************99724556************99999999888 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0057 DUF3060 3 GssNtvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 G+ v+l G+ +v+ G+ V+++ + + ++++G+ + V+ + + P vs +G T051125_1 371 GTFQHVSLRGTFPHVSLRGTFQPVSLRGTFQpVSLRGTFQPVSLRGTFPHVSLRG 425 4555688888888888888888888888777788888888888888888888777 PP == domain 3 score: 6.8 bits; conditional E-value: 0.00061 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 v+l G+ +v+ G+ +V+++ + + ++++G+ + V+ + + P vs +G T051125_1 429 HVSLRGTFPHVSLRGTFQHVSLRGTFQpVSLRGTFQHVSLRGTFPHVSLRG 479 6999******************999999************9999***9998 PP == domain 4 score: 5.2 bits; conditional E-value: 0.0019 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksG 48 v+l G+ ++v+ G+ +V+++ + + ++++G+ + V+ + + T051125_1 492 HVSLRGTFQHVSLRGTFQHVSLRGTFQhVSLRGTFQHVSLRGT 534 5667777777777777777776655555777777666666554 PP >> DUF296 Domain of unknown function (DUF296) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 6.4 0.09 7.4e+02 30 30 .. 474 474 .. 310 537 .. 0.66 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.09 E CS DUF296 30 c 30 + T051125_1 474 H 474 1 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3056 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.81 # Mc/sec: 10793.45 // Query: T051125_2 [L=3055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.30s 00:00:01.45 Elapsed: 00:00:00.81 # Mc/sec: 10789.92 // Query: T051125_3 [L=3055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 13242.18 // Query: T349338_1 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-18 66.8 0.1 1.9e-18 66.0 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.0 0.1 1.2e-22 1.9e-18 16 67 .. 1009 1060 .. 1009 1073 .. 0.89 Alignments for each domain: == domain 1 score: 66.0 bits; conditional E-value: 1.2e-22 Transposase_1 16 etpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr 67 e pk++pkp+l +kk+m+tVwWs +g + fl+pgetitse+Yaq + +++ T349338_1 1009 EDPKHFPKPNLNKKKFMVTVWWSPAGFTHHRFLNPGETITSEKYAQHIHEMH 1060 579************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6161.38 // Query: T349338_2 [L=1162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 4888.65 // Query: T349338_3 [L=1162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 5449.65 // Query: T138159_1 [L=1998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.72 # Mc/sec: 7938.80 // Query: T138159_2 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.67 # Mc/sec: 8526.98 // Query: T138159_3 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 491 (0.0301116); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.73 # Mc/sec: 7826.13 // Query: T181638_1 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.69 # Mc/sec: 4175.15 // Query: T181638_2 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.71 # Mc/sec: 4057.54 // Query: T181638_3 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 5435.58 // Query: T369081_1 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 9370.47 // Query: T369081_2 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 8.6 5.5 3.5 7.6 5.5 1.4 1 MRP-L28 Mitochondrial ribosomal protein L28 Domain annotation for each model (and alignments): >> MRP-L28 Mitochondrial ribosomal protein L28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 5.5 0.00021 3.5 44 118 .. 140 219 .. 133 225 .. 0.80 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00021 XXXXXXXXXXXXXXX.....XXXXXXXX-HHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHH-HH CS MRP-L28 44 Pveelivplksvdsak...rrqrkllelskeelerrallekqwaryrqq..ekekdeqlirqqleaqeealeeLkkvsee 118 P +l + +s+ +++ + q +ll+l + l+++ l+e +w ++r+ ++d++ + +++e q++al+ L+k+ e T369081_2 140 PTHQLQMLERSLREEElraQHQAALLRLREMALQEKTLAELAWLEHRRGclDSKRDRAVLAALVEKQQQALSRLEKEQRE 219 66666666666666551114566778889999***************9633688999*******************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 9711.22 // Query: T369081_3 [L=1866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 7736.68 // Query: T124780_1 [L=2871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 11568.23 // Query: T124780_2 [L=2870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.90 # Mc/sec: 9122.87 // Query: T124780_3 [L=2870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 12440.28 // Query: T051367_1 [L=1784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.61 # Mc/sec: 8366.76 // Query: T051367_2 [L=1783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 8645.53 // Query: T051367_3 [L=1783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 7847.48 // Query: T316984_1 [L=1618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 6807.09 // Query: T316984_2 [L=1618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 6807.09 // Query: T316984_3 [L=1618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 7714.70 // Query: T136965_1 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 9709.74 // Query: T136965_2 [L=2274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.68 # Mc/sec: 9566.95 // Query: T136965_3 [L=2273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 86 (0.00527413); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 11611.90 // Query: T279384_1 [L=1788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 9300.30 // Query: T279384_2 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 9467.23 // Query: T279384_3 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 9645.86 // Query: T174934_1 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 9563.35 // Query: T174934_2 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 10104.67 // Query: T174934_3 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 9917.54 // Query: T334766_1 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 663 (0.0406599); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 7370.84 // Query: T334766_2 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 756 (0.0463633); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 7370.84 // Query: T334766_3 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 6961.35 // Query: T053313_1 [L=2317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.50 # Mc/sec: 13257.09 // Query: T053313_2 [L=2317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12051.90 // Query: T053313_3 [L=2316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.59 # Mc/sec: 11229.97 // Query: T182842_1 [L=2007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 9899.46 // Query: T182842_2 [L=2007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.60 # Mc/sec: 9569.48 // Query: T182842_3 [L=2006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 10247.90 // Query: T173646_1 [L=4091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.31s 00:00:01.44 Elapsed: 00:00:00.60 # Mc/sec: 19506.09 // Query: T173646_2 [L=4090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.60 # Mc/sec: 19501.32 // Query: T173646_3 [L=4090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.08 12.6 1.5 0.16 11.6 1.5 1.4 1 Gly-zipper_YMGG YMGG-like Gly-zipper Domain annotation for each model (and alignments): >> Gly-zipper_YMGG YMGG-like Gly-zipper # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.5 1e-05 0.16 5 27 .. 982 1004 .. 981 1017 .. 0.85 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 1e-05 XXXXXXXXXXXXXXXXXXXXXXX CS Gly-zipper_YMGG 5 rGAaiGAaaGAvvGaliGsgggk 27 r A+ GAaaGAv+Gal +gg+ T173646_3 982 RAAGRGAAAGAVLGALLHPHGGH 1004 56999999999999999876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.59 # Mc/sec: 19831.86 // Query: T257636_1 [L=3248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.61 # Mc/sec: 15232.75 // Query: T257636_2 [L=3247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 15481.86 // Query: T257636_3 [L=3247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 13864.35 // Query: T059797_1 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 589 (0.0361217); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2118.02 // Query: T059797_2 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.2 6.1 11.5 13 5.0 11.5 1.4 1 CAP_N Adenylate cyclase associated (CAP) N terminal Domain annotation for each model (and alignments): >> CAP_N Adenylate cyclase associated (CAP) N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 11.5 0.00078 13 229 270 .. 320 359 .. 310 370 .. 0.49 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.00078 ......SSC--XXXXXXX....XXXXXXXX.....XXXXXXX CS CAP_N 229 eealkaaaaaasaaaaggpppPpPpPppasvfeeesaaasas 270 +ea ++ + +++ +++++pppPp pPpp+ +++++ ++++ T059797_2 320 QEAPRQGERESRVSQSSSPPPPPSPPPPPRTTDHRP--PTTE 359 455444455555555556444444555554432222..2222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 697 (0.042745); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 1775.40 // Query: T059797_3 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 585 (0.0358764); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 1942.60 // Query: T210907_1 [L=3177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 12282.24 // Query: T210907_2 [L=3177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.67 # Mc/sec: 13565.46 // Query: T210907_3 [L=3176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 701 (0.0429903); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.81 # Mc/sec: 11217.28 // Query: T082366_1 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-19 69.5 0.1 5e-19 67.8 0.0 1.9 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.22 3.7e+03 29 37 .. 224 232 .. 222 232 .. 0.91 2 ! 67.8 0.0 3.1e-23 5e-19 15 80 .] 404 469 .. 398 469 .. 0.97 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.22 Transposase_1 29 kkvmltVwW 37 k+ mlt++W T082366_1 224 KNSMLTILW 232 899*****9 PP == domain 2 score: 67.8 bits; conditional E-value: 3.1e-23 Transposase_1 15 getpkkvpkpelhqkkvmltV.wWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 +e pk vp+ +lhqk vm+tV w sa+gli y+fl+pgeti se+Ya+q+d +++klq+++ alvnr T082366_1 404 EEDPKNVPNINLHQKMVMVTV*W-SAAGLIPYSFLNPGETIRSEKYAEQIDAMHRKLQCLQLALVNR 469 6889****************999.*****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 3641.60 // Query: T082366_2 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 3236.98 // Query: T082366_3 [L=610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3355.97 // Query: T103742_1 [L=3398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.057 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.3 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2953 3288 .. 2953 3288 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103742_1 2953 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3038 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103742_1 3039 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3095 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103742_1 3096 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3188 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103742_1 3189 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3281 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103742_1 3282 QLLQNHA 3288 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.057 1 72 [. 3323 3392 .. 3323 3397 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103742_1 3323 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3392 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2977 3100 .. 2943 3107 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103742_1 2977 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3070 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103742_1 3071 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3100 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 3018 3107 .. 3016 3109 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103742_1 3018 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3107 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 3004 3105 .. 3003 3107 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103742_1 3004 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3098 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103742_1 3099 QEIWDYV 3105 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 3006 3100 .. 3002 3107 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103742_1 3006 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3100 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1028 1042 .. 1014 1045 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 3011 3063 .. 3004 3069 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103742_1 1028 SKKKKRKKERKKR-----KK 1042 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103742_1 3011 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3063 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3036 3095 .. 3016 3103 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103742_1 3036 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3095 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 921 (0.0564823); expected 326.1 (0.02) Passed bias filter: 366 (0.0224457); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.81u 0.34s 00:00:02.15 Elapsed: 00:00:00.83 # Mc/sec: 11712.17 // Query: T103742_2 [L=3397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.29s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 17354.00 // Query: T103742_3 [L=3397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.72 # Mc/sec: 13497.55 // Query: T316369_1 [L=4713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:00.70 # Mc/sec: 19261.56 // Query: T316369_2 [L=4713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:00.75 # Mc/sec: 17977.46 // Query: T316369_3 [L=4713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.34s 00:00:02.10 Elapsed: 00:00:00.77 # Mc/sec: 17510.51 // Query: T003462_1 [L=790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3830.60 // Query: T003462_2 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4425.87 // Query: T003462_3 [L=789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.5 0.6 0.067 12.7 0.6 1.9 1 Ribosomal_L39 Ribosomal L39 protein Domain annotation for each model (and alignments): >> Ribosomal_L39 Ribosomal L39 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.6 4.1e-06 0.067 26 40 .. 684 698 .. 678 699 .. 0.80 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.1e-06 Ribosomal_L39 26 kvrynpkrRhWRrtk 40 + +p rRhWRrtk T003462_3 684 PILLSPSRRHWRRTK 698 5667899*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 4179.99 // Query: T043264_1 [L=5039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.35s 00:00:01.93 Elapsed: 00:00:00.82 # Mc/sec: 17580.15 // Query: T043264_2 [L=5039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.34s 00:00:02.02 Elapsed: 00:00:00.83 # Mc/sec: 17368.34 // Query: T043264_3 [L=5038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.42s 00:00:02.12 Elapsed: 00:00:00.77 # Mc/sec: 18718.00 // Query: T103734_1 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 13383.20 // Query: T103734_2 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.75 # Mc/sec: 13026.31 // Query: T103734_3 [L=3415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.057 13.5 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.35 11.3 5.0 0.7 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 9.8 12.3 0.75 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.1 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3.1 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.4e-145 2.9e-142 1 368 [] 2970 3305 .. 2970 3305 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103734_3 2970 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3055 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103734_3 3056 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3112 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103734_3 3113 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3205 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103734_3 3206 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3298 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103734_3 3299 QLLQNHA 3305 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.8e-05 0.057 1 72 [. 3340 3409 .. 3340 3414 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103734_3 3340 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3409 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2994 3117 .. 2960 3124 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103734_3 2994 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3087 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103734_3 3088 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3117 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.4e-05 0.11 3 94 .. 3035 3124 .. 3033 3126 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.4e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103734_3 3035 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3124 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.7 3 95 .. 3021 3122 .. 3020 3124 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103734_3 3021 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3115 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103734_3 3116 QEIWDYV 3122 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00037 0.75 30 124 .. 3023 3117 .. 3019 3124 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00037 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103734_3 3023 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3117 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.6e+03 77 96 .. 1045 1059 .. 1031 1062 .. 0.43 2 ? 15.4 2.1 7.1e-06 0.014 44 96 .. 3028 3080 .. 3021 3086 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103734_3 1045 SKKKKRKKERKKR-----KK 1059 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7.1e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103734_3 3028 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3080 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3053 3112 .. 3033 3120 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103734_3 3053 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3112 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 920 (0.0564209); expected 326.1 (0.02) Passed bias filter: 364 (0.0223231); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.69u 0.36s 00:00:02.04 Elapsed: 00:00:00.65 # Mc/sec: 15030.36 // Query: T097870_1 [L=4062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-13 48.2 0.1 1.5e-12 47.4 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 0.00016 21.4 0.7 0.0003 20.5 0.7 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.4 0.1 1.9e-16 1.5e-12 109 218 .. 1390 1525 .. 1388 1529 .. 0.82 Alignments for each domain: == domain 1 score: 47.4 bits; conditional E-value: 1.9e-16 ...............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT- CS RVT_1 109 lstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesgl 196 + ++++++ +ng++ e ++ k+ ++qG++lS llfn++++ l r ++++ ++vtl++++DD++++ ++ ++q+ll+ ++++ k + T097870_1 1390 YDKPTANIILNGQKLESFPLKTSTRQGCPLSSLLFNIVLEALARAVSQEKeikririrrEKVTLSLFVDDMIVYLENpIVSAQNLLKLISNFSK-VSG 1486 6788999999***99*********************************99***************************55558888877777755.555 PP .-BEGGG-EEE.....................ESSEEET CS RVT_1 197 .kinpeKtklvlf...........sg.....kseevkyL 218 kin +K++++l+ s+ ++++kyL T097870_1 1487 *KINVQKSQAFLYtnnrqtesqimSElpftiATKKIKYL 1525 668889999998877666665554113445677777776 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.7 3.7e-08 0.0003 2 118 .. 872 995 .. 871 996 .. 0.79 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 3.7e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i ++Y p++ + + +++ + +l ++l+ ++ii+GDfN + + +++++ ++++++L + l++ +l + ++k+ tf s + T097870_1 872 TILNIYAPNTG-APRFTKQVFGDLQRDLD-FHTIIVGDFNTPLSILDRSTRQKiNKNNQDLNSALDQMDLIDIyrtLHPKSAeYTFFSAPHqtY 963 78999999998.55556666666666665.69**************99888889***************9966666444444477765544458 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s D ++ ++l+ + + + +++SDH++i T097870_1 964 SKTDHIIGCKTLLSKckRMKITINSLSDHSAI 995 999*****9999999996666789*****998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.70 # Mc/sec: 16600.99 // Query: T097870_2 [L=4062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-56 191.6 27.9 1.4e-51 175.3 22.9 2.9 2 Transposase_22 L1 transposable element 3e-06 26.6 1.1 7.1e-06 25.4 1.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.044 13.9 0.0 0.089 12.9 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.22 11.3 4.5 5.8 6.8 0.5 2.4 2 HSBP1 Heat shock factor binding protein 1 0.27 11.7 4.7 0.76 10.2 4.7 1.8 1 Syntaxin-6_N Syntaxin 6, N-terminal 8 6.1 12.0 2 8.0 5.5 2.3 2 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.3 22.9 5.3e-55 1.4e-51 9 263 .. 402 628 .. 398 629 .. 0.91 2 ! 17.1 0.2 6.5e-07 0.0018 329 359 .. 692 724 .. 690 724 .. 0.94 Alignments for each domain: == domain 1 score: 175.3 bits; conditional E-value: 5.3e-55 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............. CS Transposase_22 9 nrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiikekqentskqv 99 +k +nsk ++ s+P+k+++ssPa e+++ +++f+el + ++++ + ++lke + ++ke + k ++e + en T097870_2 402 TKKAENSKNQNSSSPPKDHNSSPAR--EQNWTENEFDELTEVGFRRwviTNSSKLKEHVLVQCKEAKnLDKGLQELLTRITS-----LENN---- 485 6899********************9..******************966568899**********998777888886555544.....2222.... PP .....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE CS Transposase_22 100 memnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrl 194 ++l++lk ++el + s++srid++eer+s +ed ++ei++e k rekr+++++qslq+iqd+vkrPnl l T097870_2 486 ---INDLMDLKNTARELCEAYT------------------SINSRIDQVEERISEIEDGLNEIKHEDKIREKRMRRNKQSLQKIQDYVKRPNLHL 559 ...2589*******99988887..................******************************************************* PP ES----TT--.HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 195 iGvdesedeq.lkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 iG+ es+ e+ + len+l++ii+ nfPnl+++an++iqei+rtP+r++ +ra++rh+ + + kv++k+k T097870_2 560 IGLLESDREN*TT-LENTLQDIIQVNFPNLARHANIQIQEIQRTPQRYSMRRATPRHLNIIFVKVEMKEK 628 ******9987765.9******************************************************8 PP == domain 2 score: 17.1 bits; conditional E-value: 6.5e-07 EEESSHHHHHHHHTT-HHHHHHHTT..T-SSXS CS Transposase_22 329 kvfidktklrdylstrPalkrllke..knerkd 359 k+f dk++lrd+++tr al +llke ++erk+ T097870_2 692 KIFSDKQMLRDFITTRLALLQLLKEasNMERKN 724 99***********************99999987 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 1.1 2.6e-09 7.1e-06 2 19 .] 1996 2013 .. 1996 2013 .. 0.96 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 2.6e-09 DUF1725 2 FagKWMELEnIILSEisQ 19 F g+WM+LE+IILS+ +Q T097870_2 1996 FSGTWMKLETIILSKLTQ 2013 77***************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 3.3e-05 0.089 1 72 [. 773 842 .. 773 859 .. 0.81 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3.3e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH......EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla......dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ s ++ +la+++k++d+ v + qE++ ++ +l+ + + + ++++ gva+l++ T097870_2 773 LTLNVNG----LNASIKRHRLANWIKSQDPSVYCTQETHLTCKDTYRLKIkgwr*iY----QASGKQEKAGVAILVSD 842 699****....77788999******************99998877777668888862....34556677788887765 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.5 0.0021 5.8 30 48 .. 473 491 .. 467 494 .. 0.88 2 ? 5.5 0.3 0.0052 14 24 46 .. 505 527 .. 502 531 .. 0.87 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0021 HSBP1 30 DdMssriDdLEksiadlmt 48 ++ +ri +LE++i+dlm+ T097870_2 473 QELLTRITSLENNINDLMD 491 67889*************7 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0052 HSBP1 24 qilsriDdMssriDdLEksiadl 46 +i sriD+ ++ri ++E ++++ T097870_2 505 SINSRIDQVEERISEIEDGLNEI 527 799**************988876 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 4.7 0.00028 0.76 16 96 .. 467 553 .. 452 554 .. 0.75 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00028 Syntaxin-6_N 16 kleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreevk 96 +l + ++++ +++ +++++ + +l++t +eL +a+ si+ ++++ee ++ +e +++ ki+ek ++r ++ ++++++ vk T097870_2 467 NLDKGLQELlTRITSLENNiNDLMDLKNTARELCEAYTSINSRIDQVEERISEIEDglneIKHEDKIREKRMRRNKQSLQKIQDYVK 553 444444444346666666666789999999999999999999999999999888765532446699999999999999999999887 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 5.5 0.00075 2 78 178 .. 453 547 .. 411 555 .. 0.58 2 ? 1.3 0.5 0.088 2.4e+02 68 143 .. 1142 1217 .. 1133 1221 .. 0.86 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00075 IncA 78 rlqeelselesrlaeleeeleqleerlaelea...elkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlq 174 +l+e++ + ++ + l++ l++l +r+ +le +l dl++ +l+e+ +s +sr++ +ee+i+e++ + e+ ++++++e+r +++++q T097870_2 453 KLKEHVLVQCKEAKNLDKGLQELLTRITSLENninDLMDLKNTARELCEAYTSINSRIDQVEERISEIEDGLNEIK----HEDKIREKR-----MRRNKQ 543 4444444444444555555555555544444311134455555556668888888888888888888888888888....444444333.....344444 PP IncA 175 rlqq 178 lq+ T097870_2 544 SLQK 547 4444 PP == domain 2 score: 1.3 bits; conditional E-value: 0.088 IncA 68 qsedekieesrlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikela 143 +++ek + +++ ++ e+ + +e+++ +++ ++l++++ e+++ + + ++ + +++++sl+++i +++ T097870_2 1142 KKKREKNQIDTIKNDKGEIITDPTEIQTTIREYYKHLYANKMENLEEMDKFLVTYTLPRLNQEEVKSLNRPITSYE 1217 44555555577999999999*************************9999999999***************998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 643 (0.0394333); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.58u 0.32s 00:00:01.90 Elapsed: 00:00:00.68 # Mc/sec: 17089.25 // Query: T097870_3 [L=4061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-25 87.3 0.0 1.4e-24 86.6 0.0 1.3 1 Transposase_22 L1 transposable element 2.3e-15 56.6 0.5 3.7e-15 55.9 0.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.6 0.0 1.7e-28 1.4e-24 274 332 .. 637 695 .. 630 699 .. 0.97 Alignments for each domain: == domain 1 score: 86.6 bits; conditional E-value: 1.7e-28 EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEES CS Transposase_22 274 vtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfi 332 vt k kP rlt d+saetl++rrew++ ++ilke++fqPr++yPakls+i++Geik f+ T097870_3 637 VTHKKKPFRLTVDFSAETLQTRREWGPTFDILKENNFQPRISYPAKLSLISEGEIKSFQ 695 89*******************************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.9 0.5 4.5e-19 3.7e-15 1 100 [. 1273 1381 .. 1273 1389 .. 0.91 Alignments for each domain: == domain 1 score: 55.9 bits; conditional E-value: 4.5e-19 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++R+ l++++ k+ln+++a+++++++++l++++q+gf +g + + ++ + ++++++ + k ++++++D +kaF+++++++ l T097870_3 1273 IPKPGrdtteKENFRTTFLMHINAKILNRILANQIQQHIKNLIHHDQVGFITGMQGWLSIhksiNIIHHINRTNDKTHIIVSIDAEKAFNKIQHPFML 1370 89999999999*****99***********************************999888899988888888888899********************* PP GGGG-EEET.. CS RVT_1 90 rkltafkvptk 100 +l++ +++ + T097870_3 1371 ITLNKPGIDGT 1381 99999888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.81 # Mc/sec: 14343.00 // Query: T378368_1 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.69 # Mc/sec: 10274.11 // Query: T378368_2 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.66 # Mc/sec: 10741.12 // Query: T378368_3 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 11434.09 // Query: T307680_1 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 3534.82 // Query: T307680_2 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 4005.16 // Query: T307680_3 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 3305.85 // Query: T157170_1 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 2700.82 // Query: T157170_2 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.61 # Mc/sec: 2607.58 // Query: T157170_3 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 2742.45 // Query: T260858_1 [L=707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 3428.15 // Query: T260858_2 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3606.69 // Query: T260858_3 [L=706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 3543.41 // Query: T207322_1 [L=2086] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2086 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 230 (0.0141052); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.68 # Mc/sec: 8776.02 // Query: T207322_2 [L=2085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 590 (0.036183); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.30s 00:00:01.38 Elapsed: 00:00:00.79 # Mc/sec: 7550.42 // Query: T207322_3 [L=2085] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 7.9 12.7 0.16 11.6 7.8 1.6 2 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 0.68 1.1e+04 6 17 .. 1337 1348 .. 1336 1349 .. 0.48 2 ? 11.6 7.8 9.7e-06 0.16 1 24 [. 1545 1568 .. 1545 1568 .. 0.92 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.68 Yae1_N 6 laeGkeqglqeG 17 + G +gl+ G T207322_3 1337 AQFGLSEGLMDG 1348 444555555555 PP == domain 2 score: 11.6 bits; conditional E-value: 9.7e-06 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqe 24 G +eG++eG+e+g eG+ eG++e T207322_3 1545 GRKEGQEEGREEGRKEGRKEGRKE 1568 789******************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2085 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 8902.73 // Query: T004120_1 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1300 (0.0797253); expected 326.1 (0.02) Passed bias filter: 352 (0.0215871); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.68 # Mc/sec: 5056.94 // Query: T004120_2 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.79 # Mc/sec: 4349.19 // Query: T004120_3 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 5453.74 // Query: T136929_1 [L=9526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.03u 0.51s 00:00:03.54 Elapsed: 00:00:00.99 # Mc/sec: 27527.54 // Query: T136929_2 [L=9526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 644 (0.0394947); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.36u 0.52s 00:00:03.88 Elapsed: 00:00:00.91 # Mc/sec: 29947.55 // Query: T136929_3 [L=9525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1159 (0.0710781); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.69u 0.45s 00:00:04.13 Elapsed: 00:00:00.92 # Mc/sec: 29618.92 // Query: T151416_1 [L=845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 5036.25 // Query: T151416_2 [L=845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4834.80 // Query: T151416_3 [L=844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 4471.37 // Query: T236798_1 [L=6244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-09 36.3 0.0 8.3e-09 35.5 0.0 1.3 1 rve Integrase core domain 0.0024 17.3 0.0 0.0039 16.6 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 1e-12 8.3e-09 59 117 .. 2792 2849 .. 2784 2851 .. 0.92 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 1e-12 rve 59 varfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 +++++g p+ + sDn ++++ +++ ++ lgi+++++ ++rpq+ GkvE++n+t+k T236798_1 2792 ADSRFGL-PLQIDSDNRLAFVADLVQKTAKVLGITWKLHTTYRPQSSGKVEQMNQTIKS 2849 5677787.*************************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 4.8e-07 0.0039 1 100 [. 2631 2705 .. 2631 2720 .. 0.81 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 4.8e-07 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 +pK+g+ + R+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+ F+s++l+ +++kl+af+ T236798_1 2631 VPKPGAMDCRLaQ-----DLRLVNQATVT---------LHPVVPNLYTLLGL------------LPAEDSWFTCLDLKDIFFSIRLAPESQKLFAFQW 2702 5788888888855.....99999999999.........88888888888444............55788***************************98 PP T.. CS RVT_1 98 ptk 100 +++ T236798_1 2703 EDP 2705 866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.61 # Mc/sec: 29283.64 // Query: T236798_2 [L=6244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.2 0.0 0.0027 17.3 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 1.7e-07 0.0027 32 62 .. 1993 2023 .. 1991 2027 .. 0.90 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 1.7e-07 HHHHHHHHTTGGGGSSS--TT----HHHHHH CS Gag_MA 32 kklitlCsseWptlnvgWPreGtfdltviak 62 +kl+tlC+ +Wp+l+vgW eG d +++ k T236798_2 1993 GKLRTLCEIDWPALEVGWASEGNLDGSLVFK 2023 699********************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.38u 0.37s 00:00:01.75 Elapsed: 00:00:00.62 # Mc/sec: 28811.33 // Query: T236798_3 [L=6244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-27 94.2 1.5 1.5e-25 89.8 0.1 2.2 2 Gag_p30 Gag P30 core shell protein 7.3e-13 48.0 0.5 1.1e-12 47.3 0.5 1.2 1 Transposase_22 L1 transposable element 5.9e-07 29.1 0.0 9.3e-07 28.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.1 0.01 55 16 40 .. 2115 2139 .. 2110 2141 .. 0.92 2 ! 89.8 0.1 2.8e-29 1.5e-25 83 185 .. 2183 2285 .. 2169 2291 .. 0.92 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.01 Gag_p30 16 nnpsfsedpqkltaliesillthqp 40 + ps++++pq+l l+++++ th+p T236798_3 2115 DTPSYTKKPQALMDLLQTVIQTHKP 2139 68**********************9 PP == domain 2 score: 89.8 bits; conditional E-value: 2.8e-29 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdi 180 + +p t +wd + +g ++l+ yr++ll gl+ a++ tn+ kv e +qgk+espa f +rl+eayr+ytp+dp + e++ + ++++ qsa di T236798_3 2183 MRIQLPGTDAEWDPNERQGMQRLNRYRKALLEGLKKGAQKVTNVNKVSEAIQGKDESPAQFYKRLREAYRMYTPFDPSSLENQHMINMALVSQSAEDI 2280 456789999***************************************************************************************** PP Gag_p30 181 rkklq 185 ++ ++ T236798_3 2281 KENFK 2285 *9865 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.5 2.1e-16 1.1e-12 201 310 .. 3635 3744 .. 3633 3746 .. 0.86 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 2.1e-16 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236798_3 3635 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 3723 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236798_3 3724 ETL*A-KREWHDIFKELKEKKL 3744 **775.69************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.0 1.7e-10 9.3e-07 122 207 .. 2707 2792 .. 2695 2807 .. 0.87 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.7e-10 ..TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvl 207 + ++++ ++ lpqG+++SP++f ++ +l + + g+ ll Y+DD+l+ + + + + +++ ++l+++g+k+ ++K +++ T236798_3 2707 RCHHSVPWTQLPQGFKNSPTIFGGVLA*DLQKFPTRD-LGCLLLEYIDDLLLGHPTAVGCAKGTDTLLQHLEDCGYKVPKKKAQICR 2792 5678999******************988887766665.69*********************************************93 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.63 # Mc/sec: 28354.00 // Query: T369732_1 [L=2206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 11474.53 // Query: T369732_2 [L=2206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 11907.53 // Query: T369732_3 [L=2206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 11907.53 // Query: T277296_1 [L=2814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 719 (0.0440942); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.41s 00:00:01.77 Elapsed: 00:00:00.65 # Mc/sec: 12385.19 // Query: T277296_2 [L=2814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 625 (0.0383294); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 13644.70 // Query: T277296_3 [L=2813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 845 (0.0518214); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.39s 00:00:01.66 Elapsed: 00:00:00.65 # Mc/sec: 12380.79 // Query: T170767_1 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9536.10 // Query: T170767_2 [L=1699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 9170.85 // Query: T170767_3 [L=1699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 9347.21 // Query: T137788_1 [L=1937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1495 (0.091684); expected 326.1 (0.02) Passed bias filter: 394 (0.0241629); expected 326.1 (0.02) Passed Vit filter: 181 (0.0111002); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.09u 0.40s 00:00:02.48 Elapsed: 00:00:00.72 # Mc/sec: 7696.43 // Query: T137788_2 [L=1937] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1937 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1050 (0.0643935); expected 326.1 (0.02) Passed bias filter: 272 (0.016681); expected 326.1 (0.02) Passed Vit filter: 91 (0.00558077); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.62 # Mc/sec: 8937.79 // Query: T137788_3 [L=1936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 882 (0.0540905); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 9890.30 // Query: T317229_1 [L=2799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14048.18 // Query: T317229_2 [L=2799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 13571.97 // Query: T317229_3 [L=2799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 12915.26 // Query: T051863_1 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-49 164.8 256.2 1.3e-06 28.3 9.0 24.6 22 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.2 0.1 1.7e+03 38 47 .. 269 278 .. 268 282 .. 0.76 2 ! 8.5 0.1 0.00013 2.1 7 35 .. 281 308 .. 276 311 .. 0.93 3 ! 21.8 5.4 8.7e-09 0.00014 3 46 .. 309 351 .. 307 353 .. 0.94 4 ! 19.1 0.6 6.5e-08 0.0011 27 48 .. 429 450 .. 414 450 .. 0.92 5 ! 7.8 4.7 0.00021 3.4 2 42 .. 458 498 .. 458 501 .. 0.90 6 ! 2.5 0.2 0.0098 1.6e+02 2 20 .. 490 508 .. 490 509 .. 0.84 7 ! 28.3 9.0 8.2e-11 1.3e-06 1 37 [. 510 545 .. 510 556 .. 0.81 8 ! 20.6 6.6 2.1e-08 0.00034 5 46 .. 557 601 .. 551 603 .. 0.90 9 ! 18.1 7.1 1.3e-07 0.0021 5 40 .. 601 635 .. 600 642 .. 0.90 10 ? 2.4 1.1 0.011 1.7e+02 1 30 [. 629 653 .. 629 669 .. 0.74 11 ! 19.9 12.6 3.5e-08 0.00058 1 49 [. 671 718 .. 671 718 .. 0.99 12 ! 6.8 2.0 0.00044 7.2 11 29 .. 702 719 .. 697 730 .. 0.84 13 ! 13.6 1.3 3.2e-06 0.051 7 43 .. 731 766 .. 726 767 .. 0.89 14 ? 0.6 9.5 0.038 6.3e+02 1 26 [. 768 804 .. 768 805 .. 0.75 15 ! 18.6 11.4 8.7e-08 0.0014 3 50 .] 844 893 .. 843 893 .. 0.94 16 ! 5.7 6.8 0.00093 15 14 37 .. 879 901 .. 877 902 .. 0.86 17 ! 18.7 10.8 8.2e-08 0.0013 1 36 [. 898 936 .. 898 959 .. 0.87 18 ! 10.8 24.0 2.4e-05 0.4 2 42 .. 958 1084 .. 957 1089 .. 0.97 19 ! 21.8 1.7 8.8e-09 0.00014 19 43 .. 1117 1141 .. 1117 1141 .. 0.96 20 ! 10.0 21.9 4.3e-05 0.7 4 50 .] 1156 1214 .. 1155 1214 .. 0.90 21 ? -0.3 2.3 0.071 1.2e+03 4 23 .. 1271 1303 .. 1271 1320 .. 0.77 22 ? -1.0 1.3 0.12 2e+03 13 44 .. 1345 1368 .. 1337 1374 .] 0.50 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.1 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051863_1 269 LPPGSLSRPR 278 5788888884 PP == domain 2 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaG 35 s +pLq + ++ ++gl rp+ ++Asa+ T051863_1 281 SSQPLQ-TKLMTHNGLFRPIPYVTAASAD 308 789***.********************97 PP == domain 3 score: 21.8 bits; conditional E-value: 8.7e-09 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 A as++p q +++ + +gl rps++Lp+ s+Gp+ ++++L P T051863_1 309 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPEHSQVSLCCP 351 689*******.******************************887 PP == domain 4 score: 19.1 bits; conditional E-value: 6.5e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rP+s T051863_1 429 SYLPAASPGPELSPVSLYRPRS 450 67******************98 PP == domain 5 score: 7.8 bits; conditional E-value: 0.00021 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051863_1 458 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 498 788********.***********************9966555 PP == domain 6 score: 2.5 bits; conditional E-value: 0.0098 DUF4705 2 gpAPasrrpLqapaslqas 20 +pAPas+ Lqa + l+++ T051863_1 490 DPAPASQPSLQALNFLKST 508 6**********98887776 PP == domain 7 score: 28.3 bits; conditional E-value: 8.2e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpk 37 PgpAPas++pLq ++ l++++l +p ++L++ s p T051863_1 510 PGPAPASWWPLQ-AQPLPPVSLYSPNVCLTADSSRPA 545 9***********.*****************9666554 PP == domain 8 score: 20.6 bits; conditional E-value: 2.1e-08 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 P++++ L+ +++l++sgl rps++ + A++Gp++ p ++++ P T051863_1 557 PTFQQLLH-TQLLPPSGLFRPSSCFTRAFPGPTFvswqPSLARFLP 601 899*****.************************9888887877777 PP == domain 9 score: 18.1 bits; conditional E-value: 1.3e-07 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 P+s++p q ++ l+++gls+ s++L+vAs+ p++ p T051863_1 601 PVSQQPRQ-AQVLPHTGLSTSSLCLTVASPRPTPVP 635 9*******.*********************999844 PP == domain 10 score: 2.4 bits; conditional E-value: 0.011 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 P+p P+ r+L+a ++l++ + + ++ T051863_1 629 PRPTPVPGRHLRAQNLLKSDS-----LVPT 653 899*********866666663.....3333 PP == domain 11 score: 19.9 bits; conditional E-value: 3.5e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srp + + + + lp +L+ PssC T051863_1 671 PGPAPASCQRLQ-AQPLPHGGFSRPTSSSWLGLQAQLLPHNSLFWPSSC 718 9***********.************************************ PP == domain 12 score: 6.8 bits; conditional E-value: 0.00044 DUF4705 11 LqapaslqasglsrpsaqL 29 Lq +++l++++l +ps+++ T051863_1 702 LQ-AQLLPHNSLFWPSSCP 719 99.***************8 PP == domain 13 score: 13.6 bits; conditional E-value: 3.2e-06 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 s + Lq + +l + g rps+ L AsaGp l gL T051863_1 731 SSQTLQ-AHLLLPGGINRPSFDLRTASAGPALASQGL 766 5688**.***********************9955555 PP == domain 14 score: 0.6 bits; conditional E-value: 0.038 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrps 26 PgpA as++ qa +++l++sg+ rp T051863_1 768 PGPALASWQLPQAkflpacqqpqqAQLLPHSGPFRPN 804 7888888885566788777777779999999999986 PP == domain 15 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLs.rPssCL 50 +A as++ Lq ++ ++ g r s++L +As+Gp + ++ Ls +PssCL T051863_1 844 SASASQWTLQ-TQMVSHCGILRRSSCLLAASPGPAPpaSQWPLSaQPSSCL 893 689*******.*************************8889999857****8 PP == domain 16 score: 5.7 bits; conditional E-value: 0.00093 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 pas+++ + +ps++Lp+A++ p T051863_1 879 PASQWPL-SAQPSSCLPAAFPSPA 901 7888888.789*********9885 PP == domain 17 score: 18.7 bits; conditional E-value: 8.2e-08 DUF4705 1 PgpAPasrrpLqa...paslqasglsrpsaqLpvAsaGp 36 P pA +r+pLqa p +l++ gl+rps++L++ s+ p T051863_1 898 PSPAFDFRWPLQAstrPSLLPPEGLHRPSLCLTADSPRP 936 789999***************************977655 PP == domain 18 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T051863_1 958 GPAPACQWPLQAhgahs*qrpfqaqffpsgglsgprtsssrplqthlhppcilsgpsssswlglqarflplnnlfglsaypspgglgrptasssqapq 1055 9***********************************************************************************************88 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p+g T051863_1 1056 AQVRPHGGLSRMSSCPPMASPGPKWSPVG 1084 7888*********************9986 PP == domain 19 score: 21.8 bits; conditional E-value: 8.8e-09 DUF4705 19 asglsrpsaqLpvAsaGpklppagL 43 as++++++aqLp A++Gp+l+pa+L T051863_1 1117 ASSFGSTPAQLPTAFVGPELSPAKL 1141 689********************98 PP == domain 20 score: 10.0 bits; conditional E-value: 4.3e-05 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 A ++++pLq ++ l+++glsrps+++ Gp++ p +gL+ P sCL T051863_1 1156 ALVGEQPLQ-APPLPPRGLSRPSSCPHGGLSGPSPclppsspraaqllPHGGLLMPNSCL 1214 889******.88899999999999999999999988999999999999***********8 PP == domain 21 score: -0.3 bits; conditional E-value: 0.071 DUF4705 4 APasrrpLqa.............paslqasgls 23 A as+rpL p++l+ +++s T051863_1 1271 ALASHRPLPRgqrsa*apcltpaPPTLREVSPS 1303 889*****7777888888888887777777665 PP == domain 22 score: -1.0 bits; conditional E-value: 0.12 DUF4705 13 a.............paslqasglsrpsaqLpvAsaGpklppagLs 44 p++l+ + +Ls T051863_1 1345 Rgqrsa*apcltpaPPTLREV---------------------SLS 1368 444444444444445555555.....................443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 7019.25 // Query: T051863_2 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-43 144.2 254.5 4.4e-14 52.3 8.5 26.3 22 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.9 2.3e-08 0.00037 27 48 .. 268 289 .. 253 289 .. 0.92 2 ! 7.2 5.3 0.00032 5.2 2 42 .. 297 337 .. 297 340 .. 0.90 3 ! 3.0 1.1 0.0067 1.1e+02 2 32 .. 329 364 .. 328 375 .. 0.65 4 ! 8.4 0.5 0.00014 2.2 4 21 .. 428 445 .. 427 468 .. 0.81 5 ? -0.1 2.7 0.062 1e+03 1 25 [. 478 501 .. 478 501 .. 0.75 6 ! 10.1 4.9 4e-05 0.66 7 36 .. 505 533 .. 503 535 .. 0.90 7 ! 11.7 8.6 1.3e-05 0.21 3 50 .] 533 601 .. 531 601 .. 0.83 8 ! 6.8 6.3 0.00043 7.1 2 33 .. 575 617 .. 574 618 .. 0.73 9 ! 25.6 2.8 6e-10 9.8e-06 3 50 .] 620 708 .. 619 708 .. 0.98 10 ! 24.2 0.3 1.6e-09 2.6e-05 22 49 .. 713 740 .. 709 741 .. 0.93 11 ! 4.1 0.1 0.0029 48 24 38 .. 736 750 .. 736 751 .. 0.92 12 ! 8.1 10.0 0.00017 2.7 8 50 .] 753 817 .. 744 817 .. 0.82 13 ! 13.7 0.5 3.2e-06 0.051 16 35 .. 845 864 .. 838 865 .. 0.92 14 ? 2.3 16.6 0.011 1.8e+02 2 26 .. 864 888 .. 863 918 .. 0.55 15 ! 22.4 25.6 5.8e-09 9.4e-05 1 50 [] 923 1006 .. 923 1006 .. 0.94 16 ! 4.2 0.6 0.0029 47 33 50 .] 1010 1027 .. 1005 1027 .. 0.90 17 ! 12.6 7.7 6.9e-06 0.11 14 50 .] 1023 1060 .. 1011 1060 .. 0.79 18 ! 52.3 8.5 2.7e-18 4.4e-14 4 50 .] 1068 1112 .. 1068 1112 .. 0.99 19 ? -2.4 6.1 0.32 5.2e+03 5 27 .. 1113 1147 .. 1113 1151 .. 0.79 20 ? 0.9 18.1 0.029 4.8e+02 2 50 .] 1143 1203 .. 1142 1203 .. 0.86 21 ? -2.7 1.0 0.4 6.5e+03 14 33 .. 1229 1245 .. 1222 1254 .. 0.62 22 ? -3.4 5.1 0.65 1.1e+04 6 42 .. 1289 1333 .. 1287 1339 .. 0.71 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 2.3e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rPss T051863_2 268 SYLPAASPGPELSPVSLYRPSS 289 67******************98 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00032 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051863_2 297 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 337 788********.***********************9966555 PP == domain 3 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 2 gpAPasrrpLqa.....paslqasglsrpsaqLpvA 32 +pAPas+ Lqa ++s + + +qL++A T051863_2 329 DPAPASQPSLQAlnilrSPSVVQGWSVVVLSQLTAA 364 6**********9666664433333333334455555 PP == domain 4 score: 8.4 bits; conditional E-value: 0.00014 DUF4705 4 APasrrpLqapaslqasg 21 AP+sr+pLqa + lq+ + T051863_2 428 APTSRQPLQAQNFLQSAS 445 9********977777765 PP == domain 5 score: -0.1 bits; conditional E-value: 0.062 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051863_2 478 TGTAPSLQWPL*tQ---LLPPSLLSRP 501 799*******9744...6776666665 PP == domain 6 score: 10.1 bits; conditional E-value: 4e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q +++l g+srps++Lp As p T051863_2 505 SSRPHQ-AQLLHLGGPSRPSLCLPSASTVP 533 679999.*******************9755 PP == domain 7 score: 11.7 bits; conditional E-value: 1.3e-05 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ L+a p s++ s++ +ps++ pvAs G+ + + L P sCL T051863_2 533 PTSASQQILHAqhlphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPDSCL 601 55699**************************************98876666666666666666666665 PP == domain 8 score: 6.8 bits; conditional E-value: 0.00043 DUF4705 2 gpAPasrrpLqa..........pas.lqasglsrpsaqLpvAs 33 g+A as+ p qa p+s l++s+l rp+++L++As T051863_2 575 GQAHASQGPFQAqllshgnlpwPDScLSPSSLDRPRSCLTLAS 617 8999*******77777777777554467777777777777776 PP == domain 9 score: 25.6 bits; conditional E-value: 6e-10 DUF4705 3 pAPasrrpLqa.........................................paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 pA asr+pL+a +++l++++ rp ++L As++p lp + r +CL T051863_2 620 PAYASRWPLHAqllsqdvisgpktyssqtl*sqllppggl*rpkisss*pvqAQLLPPVSVYRPNLCLMGASPDPPLPLGWVYRHNCCL 708 9*****************************************************************************99999999997 PP == domain 10 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssC 49 ++ ++qL +A +Gpklp+++LsrP+ C T051863_2 713 FGPVPVQLMAANVGPKLPQVKLSRPTFC 740 67789*********************99 PP == domain 11 score: 4.1 bits; conditional E-value: 0.0029 DUF4705 24 rpsaqLpvAsaGpkl 38 rp ++ pvAs Gp l T051863_2 736 RPTFCFPVASTGPAL 750 799**********76 PP == domain 12 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 8 rrpLqa.....................pas.lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++pLqa p+ l+as+l r s+ L+vA Gp+ ++srPs CL T051863_2 753 EQPLQAlllpprgffqaqllphgscprPNFcLPASSLNRHSSSLTVAHLGPTHDCEAISRPSACL 817 69999999999999998888888888866448899999999999999999999888899999998 PP == domain 13 score: 13.7 bits; conditional E-value: 3.2e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T051863_2 845 PLPHSGPSRPRWCLTVASSG 864 69****************98 PP == domain 14 score: 2.3 bits; conditional E-value: 0.011 DUF4705 2 gpAPasrrpLqapaslqasglsrps 26 g APa+++pLqa +l++sgl rps T051863_2 864 GEAPAFWQPLQAQLLLPPSGLFRPS 888 89*********84455666666655 PP == domain 15 score: 22.4 bits; conditional E-value: 5.8e-09 DUF4705 1 PgpAPasrrpLqa.................................pasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p l + +glsrps+ Lp+As+Gp++p++gLsrP++ L T051863_2 923 TGPASASQRTLHAqlavaslrppeskapasrplrqaqlppasglfrPMGLiPDNGLSRPSFSLPAASPGPEPPQVGLSRPTCTL 1006 8*********************************************76553789**************************9976 PP == domain 16 score: 4.2 bits; conditional E-value: 0.0029 DUF4705 33 saGpklppagLsrPssCL 50 s+Gp l p+ srP sCL T051863_2 1010 SPGPALLPGWVSRPDSCL 1027 89****99*********9 PP == domain 17 score: 12.6 bits; conditional E-value: 6.9e-06 DUF4705 14 pas.lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 p+s l+ ++l + + L +A +Gp+lp+a+L rP+s L T051863_2 1023 PDScLSTTSLDSVPTHLLAALVGPQLPQAKLPRPRSGL 1060 5543788999999***********************87 PP == domain 18 score: 52.3 bits; conditional E-value: 2.7e-18 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 APa+r++Lqap+ l+++g+s+p+++Lp++ aGp++p++gLsrP CL T051863_2 1068 APALRWHLQAPNGLRSVGSSTPRLGLPATAAGPSCPEVGLSRP--CL 1112 9******************************************..97 PP == domain 19 score: -2.4 bits; conditional E-value: 0.32 DUF4705 5 PasrrpLqa............paslqasglsrpsa 27 Pas++ L a p+ lq+s+ + p+a T051863_2 1113 PASKQALLAqllpssqppl*aPNFLQPSSEGPPPA 1147 78888888888888888888888888888888876 PP == domain 20 score: 0.9 bits; conditional E-value: 0.029 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 gp Pas++p q + l+ +++ p + +++As+G+++ pa++ rPss+L T051863_2 1143 GPPPASWWPVQF*hwlenslcrpRPCLPGASPG-PALAPTAASRGQVPacLPAARVRPSSSL 1203 899********9*********955666666665.7899*******9988877********98 PP == domain 21 score: -2.7 bits; conditional E-value: 0.4 DUF4705 14 paslqasglsrpsaqLpvAs 33 p++l+ + + s +L++A+ T051863_2 1229 PPTLREV---SVSPCLTPAP 1245 6666666...3344666554 PP == domain 22 score: -3.4 bits; conditional E-value: 0.65 DUF4705 6 asrrpLqa.............paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL p+ l+ + + s +L++A +p+l++++ T051863_2 1289 ASHRPLPR*ersarapcltpaPPMLREV---SVSPCLTPA--PPTLREVS 1333 8889998788888888888888888888...334455555..56666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7279.22 // Query: T051863_3 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-32 110.5 231.3 4.7e-12 45.8 5.6 23.8 25 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 1.5 0.00021 3.4 4 24 .. 267 287 .. 266 294 .. 0.88 2 ? 0.7 2.1 0.036 5.9e+02 1 25 [. 317 340 .. 317 347 .. 0.80 3 ? -0.8 0.1 0.11 1.7e+03 38 47 .. 429 438 .. 428 440 .. 0.74 4 ! 5.5 0.0 0.0011 18 7 34 .. 441 467 .. 436 469 .. 0.92 5 ! 36.6 6.4 2.2e-13 3.6e-09 1 49 [. 467 514 .. 467 515 .. 0.97 6 ! 21.0 6.2 1.6e-08 0.00026 1 34 [. 520 552 .. 520 562 .. 0.86 7 ! 15.4 2.7 9e-07 0.015 1 37 [. 563 598 .. 563 605 .. 0.90 8 ! 45.8 5.6 2.9e-16 4.7e-12 1 50 [] 607 655 .. 607 655 .. 0.99 9 ! 24.5 0.2 1.3e-09 2.1e-05 28 50 .] 654 676 .. 652 676 .. 0.96 10 ? -1.1 0.2 0.13 2.2e+03 26 36 .. 680 690 .. 677 716 .. 0.60 11 ! 14.7 3.9 1.5e-06 0.024 1 36 [. 735 780 .. 735 782 .. 0.97 12 ! 2.6 1.9 0.0087 1.4e+02 23 39 .. 779 795 .. 778 799 .. 0.83 13 ! 15.7 7.6 7.3e-07 0.012 2 46 .. 853 899 .. 842 901 .. 0.90 14 ! 4.2 6.7 0.0028 46 5 26 .. 916 936 .. 913 936 .. 0.95 15 ! 16.2 1.9 5.1e-07 0.0083 14 36 .. 947 969 .. 939 974 .. 0.88 16 ! 3.1 0.3 0.0061 1e+02 27 39 .. 972 984 .. 970 989 .. 0.85 17 ? 1.2 2.0 0.024 4e+02 1 22 [. 979 1000 .. 979 1014 .. 0.70 18 ! 5.0 5.6 0.0016 26 1 36 [. 1021 1056 .. 1021 1057 .. 0.90 19 ! 16.4 0.9 4.2e-07 0.0069 1 26 [. 1054 1078 .. 1054 1080 .. 0.95 20 ? 2.2 3.0 0.012 1.9e+02 1 28 [. 1087 1124 .. 1087 1129 .. 0.77 21 ! 4.3 0.5 0.0027 44 7 38 .. 1137 1167 .. 1132 1167 .. 0.91 22 ? 1.3 16.6 0.022 3.7e+02 2 26 .. 1164 1202 .. 1163 1209 .. 0.63 23 ? 1.3 1.8 0.022 3.6e+02 2 18 .. 1198 1213 .. 1197 1220 .. 0.87 24 ? -3.4 5.0 0.67 1.1e+04 4 33 .. 1238 1277 .. 1222 1287 .. 0.65 25 ? -1.9 0.5 0.23 3.7e+03 4 14 .. 1319 1335 .. 1319 1365 .. 0.65 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00021 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T051863_3 267 APTSRQPLQAQNFLQSASTDQ 287 9********999999987655 PP == domain 2 score: 0.7 bits; conditional E-value: 0.036 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051863_3 317 TGTAPSLQWPL*tQ---LLPPSLLSRP 340 799*******9744...7777766666 PP == domain 3 score: -0.8 bits; conditional E-value: 0.11 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051863_3 429 LPPGSLSRPR 438 5788888884 PP == domain 4 score: 5.5 bits; conditional E-value: 0.0011 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +pLq + + ++gl rp+ ++As T051863_3 441 SSQPLQ-TKIMTHNGLFRPIPYVTAAST 467 789***.*************99999996 PP == domain 5 score: 36.6 bits; conditional E-value: 2.2e-13 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 ++ A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T051863_3 467 TDEATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 514 67899*******.************************************ PP == domain 6 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpA asr+pLq +++l++s++ +ps L+v ++ T051863_3 520 PGPASASRQPLQ-SQRLPHSRFFTPSIYLTVDPP 552 9***********.*****************9554 PP == domain 7 score: 15.4 bits; conditional E-value: 9e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpk 37 + pAPa ++pL ++ + glsrp ++L ++++G+ T051863_3 563 THPAPATQWPL*A--KLMLHKGLSRPNFCLMATFPGQI 598 57*******9996..6********************85 PP == domain 8 score: 45.8 bits; conditional E-value: 2.9e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++pL+ +++++ gls+p +++ +s+Gpkl ++ Ls+P +CL T051863_3 607 TGPGLASHWPLY-IQLMPHGGLSTPNSCPRTSSPGPKLTQVRLSSPNYCL 655 8***********.************************************9 PP == domain 9 score: 24.5 bits; conditional E-value: 1.3e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T051863_3 654 CLLVAYEGPKSPQVDLSRPSSCL 676 9*********************9 PP == domain 10 score: -1.1 bits; conditional E-value: 0.13 DUF4705 26 saqLpvAsaGp 36 s +++ As+G T051863_3 680 STGPTSASWGL 690 55555555553 PP == domain 11 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGp 36 Pgp asr++ qa p s + +srps++L +A +G+ T051863_3 735 PGPPSASRWHQQAql*lenslcrPCSCLPGAFSRPSSCLMAAAPGQ 780 9999****************************************98 PP == domain 12 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 23 srpsaqLpvAsaGpklp 39 ++ sa+Lp+As G +p T051863_3 779 GQISACLPAASTGTAPP 795 5669*********8876 PP == domain 13 score: 15.7 bits; conditional E-value: 7.3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrps.aqLpvAsaGpkl..ppagLsrP 46 +p +s ++ q + +l+ +lsrps ++LpvAs Gp pp+gL +P T051863_3 853 DPDGVSLWHPQ-AKLLPFGSLSRPSsSCLPVASFGPAQlmPPGGLPKP 899 5666889999*.************737*********9889*****999 PP == domain 14 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp q ++ l++sgls+ps T051863_3 916 PASRRPAQ-AQPLPHSGLSTPS 936 9*******.************7 PP == domain 15 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T051863_3 947 PKLLPLGRFGRPSSRLPVASSGP 969 999*******************9 PP == domain 16 score: 3.1 bits; conditional E-value: 0.0061 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T051863_3 972 SFLTTAFPGPVFP 984 79*********97 PP == domain 17 score: 1.2 bits; conditional E-value: 0.024 DUF4705 1 PgpAPasrrpLqapaslqasgl 22 Pgp +rrpL+a ++l++ ++ T051863_3 979 PGPVFPFRRPLRAQNLLKSASP 1000 7888889*****8555555543 PP == domain 18 score: 5.0 bits; conditional E-value: 0.0016 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp Pas++pL ++ l+ s ++ ++ ++L ++s+Gp T051863_3 1021 PGPIPASQQPLW-TQCLPISwRPWSAHSFLKPSSPGP 1056 9***********.999985548999***********9 PP == domain 19 score: 16.4 bits; conditional E-value: 4.2e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +l++ g srp T051863_3 1054 PGPGQASRWPLQ-DELLPSDGISRPQ 1078 9***********.9**********97 PP == domain 20 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaq 28 P++++asrr qa pas+q s l + ++ T051863_3 1087 PRQGWASRRLPQAqvvlksgspgPASQQVSKLFWLNSC 1124 899******66778888888888888887766665555 PP == domain 21 score: 4.3 bits; conditional E-value: 0.0027 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl 38 s + L+ + +l++ gl + s + AsaGp l T051863_3 1137 SSQALR-AHLLPPGGLYSSSTGWRTASAGPAL 1167 567899.***********************75 PP == domain 22 score: 1.3 bits; conditional E-value: 0.022 DUF4705 2 gpAPasrrpLqa..............paslqasglsrps 26 gpA as+ pLqa pas+q+ + p+ T051863_3 1164 GPALASQGPLQAqllpprrplgakslPASQQPACGPAPP 1202 9**********5555555555555555555555544444 PP == domain 23 score: 1.3 bits; conditional E-value: 0.022 DUF4705 2 gpAPasrrpLqapaslq 18 gpAP sr+p +++++ T051863_3 1198 GPAPPSRWPVD-AQLMP 1213 9********97.88776 PP == domain 24 score: -3.4 bits; conditional E-value: 0.67 DUF4705 4 APasrrpLqa.............paslqasglsrpsaqLpvAs 33 A as rpL p++l+ + + s +L++A+ T051863_3 1238 ALASPRPLPRgqrsa*apcltpaPPTLREV---SVSPCLTPAP 1277 445555554488888888888888888888...4445666665 PP == domain 25 score: -1.9 bits; conditional E-value: 0.23 DUF4705 4 APasrrpLqa......p 14 A as+rpL + T051863_3 1319 ALASHRPLPR*ersv*A 1335 78999999655555553 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 7279.22 // Query: T154291_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3222.48 // Query: T154291_2 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3284.45 // Query: T154291_3 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3348.85 // Query: T014934_1 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 28.0 0.0 1.3e-06 28.0 0.0 1.9 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.0 0.0 8.3e-11 1.3e-06 1 38 [. 256 297 .. 256 301 .. 0.87 2 ? -4.7 2.2 1 1.6e+04 15 30 .. 455 470 .. 450 471 .. 0.47 Alignments for each domain: == domain 1 score: 28.0 bits; conditional E-value: 8.3e-11 Transposase_1 1 lyenkkrsaqWldkgetpkkvpkpelhq....kkvmltVwWs 38 ly+n ++ aqWl ++etpk++pkp+lh+ + +++ ++Ws T014934_1 256 LYDNRRCPAQWLYQEETPKHFPKPNLHHkeghSLCLVVCCWS 297 69**************************55544578888887 PP == domain 2 score: -4.7 bits; conditional E-value: 1 Transposase_1 15 getpkkvpkpelhqkk 30 +++kk +k+ qkk T014934_1 455 KKKKKKRNKQTNNQKK 470 3334444444444454 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 479 (0.0293757); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 2631.03 // Query: T014934_2 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-23 82.7 0.4 1.2e-23 82.7 0.4 2.0 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.1 0.73 1.2e+04 10 22 .. 214 226 .. 211 228 .. 0.80 2 ! 82.7 0.4 7.1e-28 1.2e-23 17 80 .] 268 335 .. 263 335 .. 0.91 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 0.73 Transposase_1 10 qWldkgetpkkvp 22 +W++ + t++k++ T014934_2 214 KWVPHELTKNKTN 226 8999999988875 PP == domain 2 score: 82.7 bits; conditional E-value: 7.1e-28 Transposase_1 17 tpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 t+kk++++ ++q kkv+++VwWsa+gli+y+fl+ +etitse+Yaqq+d++++klq+++ alvnr T014934_2 268 TKKKLQSTFQSQtctiKKVIVSVWWSAAGLIHYSFLNCSETITSEKYAQQIDEMHRKLQSLHLALVNR 335 6677777777777777**************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 607 (0.0372256); expected 326.1 (0.02) Passed bias filter: 269 (0.016497); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.67 # Mc/sec: 2395.41 // Query: T014934_3 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 666 (0.0408439); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2860.83 // Query: T039848_1 [L=774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4025.97 // Query: T039848_2 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-18 64.4 0.0 2.5e-17 63.0 0.0 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.0 0.0 1.5e-21 2.5e-17 67 216 .. 11 137 .. 7 139 .. 0.90 Alignments for each domain: == domain 1 score: 63.0 bits; conditional E-value: 1.5e-21 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE..SB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek..kglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + ++++ lDlk+aF+s++l+++++kl+af+ ++ es +++ ++lpqG++ SP++f ++ + l+e+ +r+ g++ll T039848_2 11 EDRWFTCLDLKDAFFSIRLARESQKLFAFQWEDL---------------------ESVITTQYt*TRLPQGFKDSPTIFGEALARDLQEFPTRHLGCVLL 89 679*****************************33.....................445566664669********************************* PP ECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEE CS RVT_1 165 rYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevk 216 +Y+DD+l+ + + + + ++a+ ++l+++g+k++++K ++ +++ +k T039848_2 90 QYVDDLLLGHPTAVGCAKGMDALLRHLEDCGYKVSKKKAQIS----RQQVIK 137 ****************************************99....455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 4607.13 // Query: T039848_3 [L=773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 3300.63 // Query: T051477_1 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.74 # Mc/sec: 12042.55 // Query: T051477_2 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-08 34.3 64.4 0.0017 18.3 12.7 4.2 4 Colipase-like Colipase-like 2.1e-07 30.8 18.0 0.01 15.7 0.0 5.8 6 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 12.7 2.1e-07 0.0017 3 87 .. 806 892 .. 804 894 .. 0.90 2 ! 17.9 13.0 2.7e-07 0.0022 3 87 .. 894 980 .. 892 982 .. 0.93 3 ! 16.7 13.3 6.5e-07 0.0053 3 84 .. 993 1076 .. 991 1078 .. 0.87 4 ? -4.3 1.7 2 1.6e+04 40 61 .. 2904 2925 .. 2903 2928 .. 0.83 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 2.1e-07 Colipase-like 3 lllkclklrklngyeCskksEcksqcClknseskekfCkare..iflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtg 87 + ++c + r + +C + c++ +C + + +C++ ++ +C + r + +C+ + c++ +c r + +C++ +g T051477_2 806 VQPHCTPARGCVQPHCTPARGCVQPHCTPPRGCVQPHCTPARgcVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARG 892 67899999******************************765548999***********************************99876 PP == domain 2 score: 17.9 bits; conditional E-value: 2.7e-07 Colipase-like 3 lllkclklrklngyeCskksEcksqcClknseskekfC.kare.iflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtg 87 + ++c + r + +C + c++ +C + + +C +r ++ +C + r + +C+ + c++ +c r + +C++ +g T051477_2 894 VQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCtPPRGcVQPHCTPPRGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARG 980 6789**********************************446779999***********************************99876 PP == domain 3 score: 16.7 bits; conditional E-value: 6.5e-07 Colipase-like 3 lllkclklrklngyeCskksEcksqcClknseskekfCkare..iflqClklrkpneevCqkhkeclskcclkLrelseqrCvk 84 + ++c + r + +C + c++ +C + + +C++ ++ +C + r + +C+ + c++ +c r + +C+ T051477_2 993 VQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARgcVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCSS 1076 678999999999999999999999999999999999997654489999999999999999999999999999999999999975 PP == domain 4 score: -4.3 bits; conditional E-value: 2 Colipase-like 40 CkareiflqClklrkpneevCq 61 C+ ++++ C + r e +C T051477_2 2904 CAQKTVAGLCQTRRAEIEGHCR 2925 8999999999999988888885 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 1.3e-06 0.01 2 97 .. 801 896 .. 800 899 .. 0.93 2 ! 13.4 0.0 6.9e-06 0.056 8 97 .. 895 984 .. 888 996 .. 0.55 3 ! 13.1 0.0 8.5e-06 0.07 2 86 .. 988 1072 .. 987 1078 .. 0.79 4 ? -10.2 8.1 2 1.6e+04 53 53 .. 2157 2157 .. 2111 2208 .. 0.55 5 ? -5.2 3.1 2 1.6e+04 43 54 .. 2481 2492 .. 2478 2503 .. 0.37 6 ? -5.6 2.0 2 1.6e+04 64 73 .. 2684 2693 .. 2680 2701 .. 0.30 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.3e-06 Mucin-like 2 psssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 p+ + qp+ +p +++p+ +P + +p +p + +p +p ++p +p + +p tp + +p +p + +p +p + +p T051477_2 801 PPRGCVQPHCTPARGCVQPHCTPARGCVQPHCTPPRGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQP 896 7888899999**************************************************************************999998887777 PP == domain 2 score: 13.4 bits; conditional E-value: 6.9e-06 Mucin-like 8 qppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 qp+ +p +++p+ +P + +p +p + +p +p ++p +p + +p tp + +p +p + +p +p + +p T051477_2 895 QPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPPRGCVQPHCTPPRGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQP 984 555555555555555555555555555555555555555555555555555555555555555555555555555555555555444444 PP == domain 3 score: 13.1 bits; conditional E-value: 8.5e-06 Mucin-like 2 psssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytap 86 p+ + qp+ +p +++p+ +P + +p +p + +p +p ++p +p + +p tp + +p +p + +p T051477_2 988 PPRGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQPHCTPARGCVQP 1072 6777788888888888888888888888888888888888888888888888888888888888888888888887777776665 PP == domain 4 score: -10.2 bits; conditional E-value: 2 Mucin-like 53 p 53 p T051477_2 2157 P 2157 2 PP == domain 5 score: -5.2 bits; conditional E-value: 2 Mucin-like 43 prdpsssytapq 54 +r+p s++ ap T051477_2 2481 QRHPASDSRAPT 2492 222222221111 PP == domain 6 score: -5.6 bits; conditional E-value: 2 Mucin-like 64 ppstpsssyg 73 p+++p +g T051477_2 2684 PQQDPQGTSG 2693 1122211111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.70 # Mc/sec: 12730.69 // Query: T051477_3 [L=3114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.74 # Mc/sec: 12038.68 // Query: T028425_1 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.65 # Mc/sec: 9251.48 // Query: T028425_2 [L=2101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 10928.37 // Query: T028425_3 [L=2101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 9106.98 // Query: T098223_1 [L=10051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-17 63.5 0.0 3e-17 62.6 0.0 1.3 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.6 0.0 1.8e-21 3e-17 48 134 .. 4127 4216 .. 4121 4223 .. 0.93 Alignments for each domain: == domain 1 score: 62.6 bits; conditional E-value: 1.8e-21 DDE_1 48 nrkawltssifeeWLekvfdkrve.....kaekrkvlLllddsrshe.tvelsecelqniklvflPasstsllqPldqgvvselKarYrrqll 134 ++kaw+t+++f++W+++++++ ve k+ + k+lLl+d+++++ + + +++ ++vf+Pa++ts+ qP+dq vvs++K++Y r+++ T098223_1 4127 KNKAWMTAHLFRAWFTEYLKPAVEtycseKNISLKILLLIDNAPCYLgALTE---IYKEMNVVFVPANTTSIPQPMDQAVVSAFKSYYFRNTF 4216 579************************99999***************87777...8********************************88876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 540 (0.0331166); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 4.16u 0.47s 00:00:04.63 Elapsed: 00:00:01.13 # Mc/sec: 25222.98 // Query: T098223_2 [L=10051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 677 (0.0415185); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 93 (0.00570342); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.93u 0.47s 00:00:05.40 Elapsed: 00:00:01.21 # Mc/sec: 23763.80 // Query: T098223_3 [L=10050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1153 (0.0707102); expected 326.1 (0.02) Passed bias filter: 275 (0.016865); expected 326.1 (0.02) Passed Vit filter: 168 (0.010303); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.54u 0.60s 00:00:07.14 Elapsed: 00:00:01.28 # Mc/sec: 22461.99 // Query: T358361_1 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 5546.32 // Query: T358361_2 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-24 85.7 0.0 4.3e-24 84.9 0.0 1.3 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.9 0.0 2.6e-28 4.3e-24 2 92 .. 689 783 .. 688 793 .. 0.89 Alignments for each domain: == domain 1 score: 84.9 bits; conditional E-value: 2.6e-28 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssk 92 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p+ + T358361_2 689 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIPQWA 783 7****************************97765324444559*******************************.***************999444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.57 # Mc/sec: 5928.82 // Query: T358361_3 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 6032.84 // Query: T176333_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 3256.58 // Query: T176333_2 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.65 # Mc/sec: 3001.67 // Query: T176333_3 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 4241.49 // Query: T122146_1 [L=7170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.37s 00:00:02.54 Elapsed: 00:00:00.73 # Mc/sec: 28098.84 // Query: T122146_2 [L=7170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.44s 00:00:02.63 Elapsed: 00:00:00.88 # Mc/sec: 23309.26 // Query: T122146_3 [L=7170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.35u 0.48s 00:00:02.83 Elapsed: 00:00:00.78 # Mc/sec: 26297.63 // Query: T125929_1 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4776.72 // Query: T125929_2 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 4850.21 // Query: T125929_3 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.75 # Mc/sec: 4203.51 // Query: T276652_1 [L=3369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.87 # Mc/sec: 11078.32 // Query: T276652_2 [L=3368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 11.5 0.4 5.9 4.4 0.0 3.4 4 Raffinose_syn Raffinose synthase or seed imbibition protein Domain annotation for each model (and alignments): >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.0 0.00036 5.9 90 146 .. 273 327 .. 266 338 .. 0.70 2 ? 1.7 0.0 0.0023 38 89 120 .. 348 381 .. 342 389 .. 0.80 3 ? -1.6 0.0 0.023 3.8e+02 90 120 .. 790 822 .. 784 831 .. 0.69 4 ? -2.6 0.0 0.049 8e+02 89 120 .. 974 1007 .. 971 1012 .. 0.72 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.00036 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPlleGsfraslqggekdeveicles 146 rdi++etq++ l ++ s+ + +++++ vll + Gs r + e + v++ + T276652_2 273 SRDINKETQLVPLSVTKASSRDINKETHLVLLSVTKGSSRDI--SKETQLVLLSVTK 327 578888888888888888888888888888888888887765..3344444444444 PP == domain 2 score: 1.7 bits; conditional E-value: 0.0023 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 s rdi+ etq++l+ ++ s+ ++e+++y +l T276652_2 348 SSRDINRETQLVLVSVTKASSCdiDKETQSYLLL 381 679***********99955555348888888765 PP == domain 3 score: -1.6 bits; conditional E-value: 0.023 Raffinose_syn 90 Grdieaetqflllesksesdg..edeqkvyvvl 120 rd ++etq++ll ++ s+ ++e++++ +l T276652_2 790 SRDFNKETQLVLLSVTKASSHdiNKETESFYLL 822 48************9966665234445554444 PP == domain 4 score: -2.6 bits; conditional E-value: 0.049 Raffinose_syn 89 sGrdieaetqflllesksesdg..edeqkvyvvl 120 + rdi++et ++ll ++ s+ ++e++++ +l T276652_2 974 NSRDINKETHLVLLSVTKASSRdiSKETQSFYLL 1007 679***********99966655235555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.76 # Mc/sec: 12677.99 // Query: T276652_3 [L=3368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.006 15.4 0.1 8.8 5.0 0.0 4.1 5 DUF759 Borrelia burgdorferi protein of unknown functi ------ inclusion threshold ------ 0.054 11.1 0.2 2 6.0 0.0 3.3 5 Raffinose_syn Raffinose synthase or seed imbibition protein Domain annotation for each model (and alignments): >> DUF759 Borrelia burgdorferi protein of unknown function (DUF759) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.0 0.0 0.0011 8.8 197 234 .. 184 222 .. 169 244 .. 0.75 2 ? -1.3 0.0 0.083 6.8e+02 201 234 .. 449 482 .. 441 497 .. 0.80 3 ? 1.3 0.0 0.013 1.1e+02 196 234 .. 720 758 .. 714 765 .. 0.89 4 ? -3.9 0.0 0.52 4.3e+03 198 233 .. 924 960 .. 916 962 .. 0.77 5 ! 2.8 0.0 0.0049 40 201 234 .. 1056 1089 .. 1048 1103 .. 0.87 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0011 DUF759 197 dkekkg.lldgmkgferdlekeeflnqasvfkgtlrdld 234 +ke++ ll kg rd++ke l sv kg+ rd++ T276652_3 184 NKETQLvLLSVTKGSSRDINKETQLVLLSVTKGSSRDIN 222 455544145577888888888888888888888888875 PP == domain 2 score: -1.3 bits; conditional E-value: 0.083 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l+ sv k + d++ T276652_3 449 TVLLPVTKGGSRDINKETHLDLLSVTKASSCDIN 482 4567789*******************99877765 PP == domain 3 score: 1.3 bits; conditional E-value: 0.013 DUF759 196 kdkekkglldgmkgferdlekeeflnqasvfkgtlrdld 234 +ke++ +l k d++ke l sv kg+ rdl T276652_3 720 INKETHLVLSVTKASSCDINKETHLVLLSVTKGSSRDLS 758 5789999999***************************96 PP == domain 4 score: -3.9 bits; conditional E-value: 0.52 DUF759 198 kekkg.lldgmkgferdlekeeflnqasvfkgtlrdl 233 ke++ ll k rd++ke l sv k + d+ T276652_3 924 KETQLvLLSFTKASSRDINKESHLVLLSVTKASSHDI 960 555541556789999*********9999999988776 PP == domain 5 score: 2.8 bits; conditional E-value: 0.0049 DUF759 201 kglldgmkgferdlekeeflnqasvfkgtlrdld 234 ll kg rd++ke l sv kg+ rd+ T276652_3 1056 TVLLSVTKGGSRDINKETHLVLLSVTKGSSRDIS 1089 4578889************************986 PP >> Raffinose_syn Raffinose synthase or seed imbibition protein Sip1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.00024 2 89 130 .. 179 220 .. 174 247 .. 0.83 2 ? -0.7 0.0 0.025 2e+02 91 129 .. 589 627 .. 582 635 .. 0.85 3 ? -3.8 0.0 0.22 1.8e+03 92 130 .. 719 756 .. 716 764 .. 0.70 4 ? -0.7 0.0 0.026 2.1e+02 90 124 .. 919 953 .. 913 962 .. 0.87 5 ? -4.3 0.0 0.32 2.6e+03 91 117 .. 1067 1095 .. 1064 1100 .. 0.68 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00024 Raffinose_syn 89 sGrdieaetqflllesksesdgedeqkvyvvllPlleGsfra 130 s rdi++etq++ll ++ s+ + ++++ vll + Gs r T276652_3 179 SSRDINKETQLVLLSVTKGSSRDINKETQLVLLSVTKGSSRD 220 578999999999999999999999999999999999998875 PP == domain 2 score: -0.7 bits; conditional E-value: 0.025 Raffinose_syn 91 rdieaetqflllesksesdgedeqkvyvvllPlleGsfr 129 di++et ++ll ++ s+ + +++++ vll + + s r T276652_3 589 CDINKETHLVLLSVTKASSCDINKETHLVLLSVTNASSR 627 49*************99999*********9998887766 PP == domain 3 score: -3.8 bits; conditional E-value: 0.22 Raffinose_syn 92 dieaetqflllesksesdgedeqkvyvvllPlleGsfra 130 di++et ++l +k s+ + +++++ vll + Gs r T276652_3 719 DINKETHLVLSVTK-ASSCDINKETHLVLLSVTKGSSRD 756 78888877665444.677788888888888888887764 PP == domain 4 score: -0.7 bits; conditional E-value: 0.026 Raffinose_syn 90 GrdieaetqflllesksesdgedeqkvyvvllPll 124 r i++etq++ll ++ s+ + +++++ vll + T276652_3 919 SRGINKETQLVLLSFTKASSRDINKESHLVLLSVT 953 5789************99999*******9999765 PP == domain 5 score: -4.3 bits; conditional E-value: 0.32 Raffinose_syn 91 rdieaetqflllesksesdg..edeqkvy 117 rdi++et ++ll ++ s+ +++++++ T276652_3 1067 RDINKETHLVLLSVTKGSSRdiSKKTQSF 1095 8***********99966666224444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.74 # Mc/sec: 13020.64 // Query: T102663_1 [L=5023] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5023 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.65 # Mc/sec: 22107.61 // Query: T102663_2 [L=5022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:00.70 # Mc/sec: 20524.41 // Query: T102663_3 [L=5022] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5022 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 617 (0.0378388); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.35s 00:00:02.55 Elapsed: 00:00:00.84 # Mc/sec: 17103.68 // Query: T133990_1 [L=3458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.67 # Mc/sec: 14765.30 // Query: T133990_2 [L=3458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.76 # Mc/sec: 13016.78 // Query: T133990_3 [L=3457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.63 # Mc/sec: 15698.24 // Query: T111047_1 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 4183.96 // Query: T111047_2 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 4183.96 // Query: T111047_3 [L=936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 4318.93 // Query: T233835_1 [L=4997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1479 (0.0907028); expected 326.1 (0.02) Passed bias filter: 423 (0.0259414); expected 326.1 (0.02) Passed Vit filter: 255 (0.0156384); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.45u 0.51s 00:00:05.96 Elapsed: 00:00:01.32 # Mc/sec: 10829.98 // Query: T233835_2 [L=4997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1467 (0.0899669); expected 326.1 (0.02) Passed bias filter: 450 (0.0275972); expected 326.1 (0.02) Passed Vit filter: 244 (0.0149638); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.68u 0.43s 00:00:05.10 Elapsed: 00:00:01.27 # Mc/sec: 11256.35 // Query: T233835_3 [L=4996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1273 (0.0780694); expected 326.1 (0.02) Passed bias filter: 350 (0.0214645); expected 326.1 (0.02) Passed Vit filter: 174 (0.0106709); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.97u 0.48s 00:00:04.45 Elapsed: 00:00:01.09 # Mc/sec: 13112.57 // Query: T183297_1 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1295 (0.0794186); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 5946.77 // Query: T183297_2 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.60 # Mc/sec: 6041.12 // Query: T183297_3 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 868 (0.0532319); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.84 # Mc/sec: 4315.09 // Query: T221919_1 [L=1725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 8508.50 // Query: T221919_2 [L=1725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.3 8.9 0.031 14.1 8.9 1.6 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 8.9 1.9e-06 0.031 34 75 .. 1225 1266 .. 1215 1280 .. 0.85 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.9e-06 Lamprin 34 gflghpvgglgygglgygglgvaglgvaglgygglgypgaal 75 g +g v gl lg+ lg+aglgv g gy glg g+ + T221919_2 1225 GCVGLGVAGLDTAELGWAWLGWAGLGVVGHGYVGLGVAGCGV 1266 788999******************************998654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 10071.29 // Query: T221919_3 [L=1724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.2 12.1 0.14 12.0 0.6 2.6 2 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 5.1 0.003 50 45 71 .. 1208 1235 .. 1193 1256 .. 0.57 2 ? 12.0 0.6 8.7e-06 0.14 33 71 .. 1267 1305 .. 1256 1310 .. 0.93 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.003 Lamprin 45 ygglgyg.glgvaglgvaglgygglgyp 71 y g+ +g g g+ glgva lg+ lg+ T221919_3 1208 YSGVVWGvGCGFQGLGVAVLGWAWLGWT 1235 4444443345555555555555555443 PP == domain 2 score: 12.0 bits; conditional E-value: 8.7e-06 Lamprin 33 tgflghpvgglgygglgygglgvaglgvaglgygglgyp 71 g+ gh l + g + gvagl va l glgy T221919_3 1267 RGWTGHGCTQLCWAGCDWAWCGVAGLCVAALSCVGLGYC 1305 699**********************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 9133.46 // Query: T051571_1 [L=4265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.56 # Mc/sec: 21788.29 // Query: T051571_2 [L=4264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 21783.18 // Query: T051571_3 [L=4264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.28s 00:00:01.52 Elapsed: 00:00:00.57 # Mc/sec: 21032.03 // Query: T337385_1 [L=2660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-09 37.7 0.0 2.1e-09 37.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 0.0 1.3e-13 2.1e-09 159 222 .] 2063 2143 .. 2043 2143 .. 0.87 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.3e-13 ...TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T337385_1 2063 EEVKLSLFADDMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSElpvtiASKRIKYLGIQL 2143 689***************6677***************************99999888776661166778*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 13120.36 // Query: T337385_2 [L=2660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-37 127.8 0.8 3.8e-37 127.8 0.8 2.0 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.0 0.29 4.8e+03 7 21 .. 247 261 .. 243 262 .. 0.88 2 ? -2.3 0.1 0.15 2.4e+03 196 221 .. 539 594 .. 532 594 .. 0.76 3 ! 127.8 0.8 2.3e-41 3.8e-37 1 158 [. 1887 2053 .. 1887 2067 .. 0.96 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.29 S-EEE......-THH CS RVT_1 7 gsyRpisllsvdyka 21 ++yR+isl+++++k+ T337385_2 247 NNYRIISLTNTKGKI 261 79*********9996 PP == domain 2 score: -2.3 bits; conditional E-value: 0.15 --BEGGG-EEE...................................ESSEEETTEE CS RVT_1 196 lkinpeKtklvlf............................sg..kseevkyLGvt 221 l+i +eK k v + s+ +++vkyLG++ T337385_2 539 LHIRKEKNKTVACgscksilrkikrsqqk*svklsskfnqaSFkrAAQSVKYLGIN 594 6788888888877888888888888888888888877655411579********85 PP == domain 3 score: 127.8 bits; conditional E-value: 2.3e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++ +gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l T337385_2 1887 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDKVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFML 1984 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++l++++++ + +++i++++ ++++ + +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ T337385_2 1985 KTLNKLGIDGMYLKIIRAIYDKPTADIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEK 2053 ********************************99********************************964 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 612 (0.0375322); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 13120.36 // Query: T337385_3 [L=2660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.3 0.0 0.00026 20.4 0.0 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 1.6e-08 0.00026 1 19 [] 2610 2628 .. 2610 2628 .. 0.97 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 1.6e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+ M+LE+IILS+ sQ T337385_3 2610 SFVGTRMKLETIILSKLSQ 2628 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 13588.94 // Query: T052874_1 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 5603.86 // Query: T052874_2 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5710.22 // Query: T052874_3 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5710.22 // Query: T316825_1 [L=2238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 11640.98 // Query: T316825_2 [L=2238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11856.55 // Query: T316825_3 [L=2237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 11851.25 // Query: T172327_1 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 9982.79 // Query: T172327_2 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-16 61.0 0.0 2.1e-16 60.3 0.0 1.3 1 RNase_H RNase H 4.9e-05 23.4 0.3 0.0001 22.4 0.3 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.3 0.0 2.6e-20 2.1e-16 5 123 .. 377 495 .. 374 497 .. 0.85 Alignments for each domain: == domain 1 score: 60.3 bits; conditional E-value: 2.6e-20 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + + ++++vniytDS+Y++ +++ vh++ +++ +s +k+vk T172327_2 377 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASElS--EGKTVNIYTDSQYAFLTLQ--VHGALYKEKGLlNSGGKDVKY 471 68*******99999******766766.557778999****************8844..9**************9555..566644444443888899*** PP .HHHHHHHHHCHCSSEEEEEE-SC CS RNase_H 101 .kelaellkelakkkkvqlkhvkg 123 + + +ll+++ k++kv ++h++g T172327_2 472 *QGILQLLEAVWKPQKVAVMHCRG 495 **********************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.3 1.2e-08 0.0001 1 32 [. 584 615 .. 584 615 .. 0.98 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 1.2e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVi 32 H++tHlG++ l++ll +++++l++++++++V+ T172327_2 584 HETTHLGQESLEKLLGQYFYILHLSALAKTVV 615 9****************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 10161.06 // Query: T172327_3 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 10345.80 // Query: T381554_1 [L=4848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.63 # Mc/sec: 22014.77 // Query: T381554_2 [L=4847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.30s 00:00:01.51 Elapsed: 00:00:00.60 # Mc/sec: 23110.74 // Query: T381554_3 [L=4847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.60 # Mc/sec: 23110.74 // Query: T256207_1 [L=2645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 13275.25 // Query: T256207_2 [L=2645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.55 # Mc/sec: 13757.99 // Query: T256207_3 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13507.20 // Query: T177397_1 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 12245.29 // Query: T177397_2 [L=2611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.70 # Mc/sec: 10670.90 // Query: T177397_3 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.62 # Mc/sec: 12043.17 // Query: T112618_1 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-17 63.5 7.9 3.3e-17 63.0 7.9 1.1 1 7tm_4 Olfactory receptor 4.1e-09 35.9 1.5 6.5e-09 35.3 1.5 1.2 1 7tm_1 7 transmembrane receptor (rhodopsin family) Domain annotation for each model (and alignments): >> 7tm_4 Olfactory receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.0 7.9 4.1e-21 3.3e-17 1 92 [. 196 288 .. 196 305 .. 0.92 Alignments for each domain: == domain 1 score: 63.0 bits; conditional E-value: 4.1e-21 7tm_4 1 fsliyliillGnliilfvirtessl.hqPmylflamlalidlglsastlptvlGiflvelreisleaclaqsffihklsllesavllamavdr 92 f + y+ i+lGnl+i+ +++++ l Pmy+fl l+ idl+ls tlp++lG fl + + is+ claq +f+h l e l ma+d T112618_1 196 FLFFYIAIVLGNLLIVVTVQAHAHLlQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGKSISFSGCLAQIYFLHFLGASEMFLLTVMAYDS 288 5678************999999876156***************************************************************95 PP >> 7tm_1 7 transmembrane receptor (rhodopsin family) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.3 1.5 8e-13 6.5e-09 1 81 [. 206 287 .. 206 287 .. 0.90 Alignments for each domain: == domain 1 score: 35.3 bits; conditional E-value: 8e-13 HHHHHHHHHHH-CC.C-SHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSSCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF 7tm_1 1 gNllvllviltkks.lrtstnyfilsLaisDlllgllvlpfaiiyeltnewlfgsvlCklwlsldvvlstasilnllaisiD 81 gNll+++++ + + l+++++yf+ +L++ Dl+l++++lp ++ +l + ++ +C ++++ +l +++++l+++++D T112618_1 206 GNLLIVVTVQAHAHlLQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGKSISFSGCLAQIYFLHFLGASEMFLLTVMAYD 287 799999888887775899**************************877666666878************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.45 # Mc/sec: 3763.58 // Query: T112618_2 [L=591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.62 # Mc/sec: 2727.02 // Query: T112618_3 [L=591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 2641.80 // Query: T278481_1 [L=2165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 9831.26 // Query: T278481_2 [L=2165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.80 # Mc/sec: 7742.12 // Query: T278481_3 [L=2165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.73 # Mc/sec: 8484.52 // Query: T222470_1 [L=1393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.74 # Mc/sec: 5385.32 // Query: T222470_2 [L=1393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.66 # Mc/sec: 6038.09 // Query: T222470_3 [L=1392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.69 # Mc/sec: 5771.41 // Query: T282304_1 [L=973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4970.69 // Query: T282304_2 [L=973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 4563.26 // Query: T282304_3 [L=973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 4799.29 // Query: T317520_1 [L=1569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 7124.83 // Query: T317520_2 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 6901.20 // Query: T317520_3 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 6796.64 // Query: T018829_1 [L=7395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-29 100.9 16.4 6.3e-29 100.9 16.4 2.5 3 CCDC144C CCDC144C protein coiled-coil region 1.5e-15 57.4 6.5 1.5e-15 57.4 6.5 2.4 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.1 5.9 2 1.6e+04 191 237 .. 157 203 .. 145 254 .. 0.59 2 ! 100.9 16.4 7.7e-33 6.3e-29 1 96 [. 703 798 .. 703 799 .. 0.99 3 ? -3.3 1.3 0.43 3.5e+03 75 107 .. 1168 1200 .. 1155 1214 .. 0.73 Alignments for each domain: == domain 1 score: -6.1 bits; conditional E-value: 2 CCDC144C 191 aqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 + + l ++++e+e+ +++ +kq ++e +se + L + + T018829_1 157 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 44444444555555555555555555555555555555544444433 PP == domain 2 score: 100.9 bits; conditional E-value: 7.7e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018829_1 703 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 798 9*********************************************************************************************95 PP == domain 3 score: -3.3 bits; conditional E-value: 0.43 CCDC144C 75 lnskLekekqnkerletevesyrsrLaaAiqdh 107 + k+ k k e++ te+e y+ aaA++ T018829_1 1168 VDCKFYKMKTAYEEVTTELEEYKEAFAAALKAN 1200 556777888999999999999999999998753 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.9 2.5 2 1.6e+04 34 74 .. 151 191 .. 149 197 .. 0.87 2 ? -7.5 6.2 2 1.6e+04 30 87 .. 725 781 .. 710 794 .. 0.56 3 ! 57.4 6.5 1.8e-19 1.5e-15 3 69 .. 1160 1225 .. 1159 1227 .. 0.93 Alignments for each domain: == domain 1 score: -4.9 bits; conditional E-value: 2 DUF3496 34 kqlyleelkvrksLsnklnktnerLaevstkllvekeqnrs 74 ++ y++ l++++ L l++++er + + k ke n++ T018829_1 151 QRKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNT 191 568999********************999999999987765 PP == domain 2 score: -7.5 bits; conditional E-value: 2 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018829_1 725 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 781 554.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 57.4 bits; conditional E-value: 1.8e-19 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018829_1 1160 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1225 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.68u 0.43s 00:00:03.11 Elapsed: 00:00:00.93 # Mc/sec: 22748.21 // Query: T018829_2 [L=7395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-29 102.1 13.6 2.7e-29 102.1 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region ------ inclusion threshold ------ 3.1 7.7 19.2 0.025 14.5 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 1.2 3.3e-05 0.27 96 143 .. 797 842 .. 784 843 .. 0.87 2 ! 102.1 13.6 3.3e-33 2.7e-29 184 304 .. 881 992 .. 870 993 .. 0.94 3 ? -7.9 20.5 2 1.6e+04 121 231 .. 1040 1154 .. 1013 1157 .. 0.78 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 3.3e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018829_2 797 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 842 689**********************9554.57..89*********9976 PP == domain 2 score: 102.1 bits; conditional E-value: 3.3e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018829_2 881 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 971 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018829_2 972 MNECD-H*KESLFRYEREKAER 992 ****7.55589**********8 PP == domain 3 score: -7.9 bits; conditional E-value: 2 CCDC144C 121 fqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yig 214 + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ +++ T018829_2 1040 VESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQ 1137 44555778888999999999999999999999844458899999999999999888777777889999999999999999977666666666552677 PP CCDC144C 215 kqesleerlsqlqsenl 231 +q ++ +l ql+++ + T018829_2 1138 EQAQYKKQLEQLNKDII 1154 88899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 1.1 3.1e-06 0.025 24 94 .. 883 952 .. 879 953 .. 0.95 2 ? -2.5 11.1 0.53 4.3e+03 9 96 .. 1065 1150 .. 1039 1156 .. 0.85 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 3.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018829_2 883 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 952 68999********************************************************76.9999986 PP == domain 2 score: -2.5 bits; conditional E-value: 0.53 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018829_2 1065 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 1150 55555666678899999**************999999999******************************9999984..467666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 692 (0.0424384); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.64u 0.51s 00:00:03.15 Elapsed: 00:00:00.91 # Mc/sec: 23248.17 // Query: T018829_3 [L=7394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.5 0.4 1.9e-08 34.0 0.4 1.1 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 6.4e-07 28.7 3.0 8.7e-07 28.2 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.4 2.3e-12 1.9e-08 185 228 .. 2127 2170 .. 2122 2176 .. 0.92 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.3e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018829_3 2127 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2170 679**************************************998 PP >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 3.0 1.1e-10 8.7e-07 145 185 .. 842 882 .. 842 884 .. 0.97 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.1e-10 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018829_3 842 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 882 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.09u 0.42s 00:00:02.50 Elapsed: 00:00:00.79 # Mc/sec: 26775.92 // Query: T118248_1 [L=2805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 10992.64 // Query: T118248_2 [L=2805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2805 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 10421.59 // Query: T118248_3 [L=2804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.33s 00:00:01.57 Elapsed: 00:00:00.70 # Mc/sec: 11459.67 // Query: T170374_1 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 849 (0.0520667); expected 326.1 (0.02) Passed bias filter: 419 (0.0256961); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.66 # Mc/sec: 8079.68 // Query: T170374_2 [L=1864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.0 0.0 0.2 11.3 0.0 1.2 1 IncA IncA protein Domain annotation for each model (and alignments): >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 1.2e-05 0.2 35 116 .. 193 283 .. 190 286 .. 0.95 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.2e-05 IncA 35 alisiilgivllAlgvvLlalgllllllkapvlqsedekiee.........srlqeelselesrlaeleeeleqleerlaeleaelkdlee 116 al+ +++++++ A g +L+a +l+ ++ p++++ ++ + +l ++l+e+ +r l+++l+q e++ +ele+ lk++e T170374_2 193 ALCGVAVFLAAAAAGGALVAWNLAASAARGPRCPEPGANATAppgdpppgvDDLRRRLAEAAEREEALARQLDQAESIRHELEKALKACEG 283 78999999*****************************99999*********************************************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 771 (0.0472832); expected 326.1 (0.02) Passed bias filter: 408 (0.0250215); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.43s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 7510.69 // Query: T170374_3 [L=1863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 456 (0.0279652); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.71 # Mc/sec: 7506.66 // Query: T263538_1 [L=219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3141 (0.192628); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 154 (0.00944438); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 908.00 // Query: T263538_2 [L=219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 1027.08 // Query: T263538_3 [L=219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2143 (0.131424); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 135 (0.00827916); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.43s 00:00:01.97 Elapsed: 00:00:00.74 # Mc/sec: 846.65 // Query: T182269_1 [L=3048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:00.87 # Mc/sec: 10022.77 // Query: T182269_2 [L=3048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.69 # Mc/sec: 12637.41 // Query: T182269_3 [L=3048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.59 # Mc/sec: 14779.34 // Query: T317442_1 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.74 # Mc/sec: 6599.24 // Query: T317442_2 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 7746.95 // Query: T317442_3 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 7284.44 // Query: T108364_1 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0044 15.7 8.8 0.0069 15.0 8.8 1.2 1 Presenilin Presenilin ------ inclusion threshold ------ 1.3 8.2 16.2 2.4 7.3 16.2 1.3 1 NOA36 NOA36 protein 3 7.9 31.3 0.27 11.3 26.1 1.7 2 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 3.5 8.2 18.1 6.9 7.3 18.1 1.5 1 FYDLN_acid Protein of unknown function (FYDLN_acid) 3.6 7.0 20.2 6.5 6.1 20.2 1.3 1 PPP4R2 PPP4R2 5.2 7.4 9.2 0.054 13.8 1.7 1.6 2 RNA_pol_Rpc4 RNA polymerase III RPC4 7.3 6.5 18.4 13 5.7 18.4 1.3 1 RXT2_N RXT2-like, N-terminal Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 8.8 3e-06 0.0069 236 310 .. 301 374 .. 281 434 .. 0.45 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 3e-06 Presenilin 236 kaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeee 310 +++++++++++++ ++++++++++++s +++++++++++e+eee++e+e+e+ee++ee+eeee++e++eee+ e T108364_1 301 RRRRRRRRRRRRRRRRRRRRRRRRRRRSRRRRRRRRKRKKEKEEEEEEEEEEEEEEEEEDEEEEEEEEEEEER-E 374 1111111111111111111111111111111111111111111111111111111111111111111111111.1 PP >> NOA36 NOA36 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 16.2 0.001 2.4 268 304 .. 336 372 .. 288 379 .. 0.33 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.001 NOA36 268 dededdegdedddddddeeddeeeeddeeeeeeedee 304 ++++++ +e+++++++ee++eee+++eeeeeee+ee T108364_1 336 RKRKKEKEEEEEEEEEEEEEEEEEDEEEEEEEEEEEE 372 1112222222222222222222222222222222222 PP >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 26.1 0.00012 0.27 160 214 .. 313 372 .. 285 376 .. 0.38 2 ? -1.7 0.2 1.1 2.6e+03 138 159 .. 731 751 .. 726 767 .. 0.53 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00012 RNA_pol_3_Rpc31 160 k.......eadeedeegksaleklkelaeeeddeeekkekedeeeeeeeeeeeddefdddde 214 + +++ + + ++ +++k+++e+e++eee++e+e+eeeee +eee++e ++++e T108364_1 313 RrrrrrrrRRRRRRRSRRRRRRRRKRKKEKEEEEEEEEEEEEEEEEE--DEEEEEEEEEEEE 372 02222222333333334444444444444444432222222222222..2222222222222 PP == domain 2 score: -1.7 bits; conditional E-value: 1.1 RNA_pol_3_Rpc31 138 ELwptlkdgkdekeekgkskkk 159 +L ++ + + ++k++k+k+kkk T108364_1 731 SLGNKSE-TPSKKKKKRKRKKK 751 4444442.11112233333333 PP >> FYDLN_acid Protein of unknown function (FYDLN_acid) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 18.1 0.003 6.9 44 89 .. 328 370 .. 302 380 .. 0.43 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.003 FYDLN_acid 44 sraaaaeaeeekkkkeaeedeedeeeeedvsdedadeeeeeddddd 89 sr+ +++++++ k+++e+ee+eeeee++++e++deeeee+++++ T108364_1 328 SRRRRRRRRKR---KKEKEEEEEEEEEEEEEEEEEDEEEEEEEEEE 370 22222222222...22222222222222222222222222222221 PP >> PPP4R2 PPP4R2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 20.2 0.0028 6.5 243 285 .. 333 375 .. 291 378 .. 0.47 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0028 PPP4R2 243 desvkveekdddeeddeedtdyveeeeddesedddeeeeeeee 285 +k ++++++ee++ee+++ +eeeed+e+e+++eeeee ee T108364_1 333 RRRRKRKKEKEEEEEEEEEEEEEEEEEDEEEEEEEEEEEEREE 375 2222222222233333333333333444444444444444443 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 1.7 2.3e-05 0.054 10 60 .. 242 372 .. 233 384 .. 0.44 2 ? -3.9 1.0 6.6 1.5e+04 43 60 .. 740 746 .. 729 753 .. 0.30 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 2.3e-05 RNA_pol_Rpc4 10 PpllPplkq...................................................................................avsaa 23 P+++P k+ + + T108364_1 242 PQTFPFCKKplhghsdkgvtifshhsh*rlsprgk*lenfevhlvegtdaikrrrssrrrrrrrrrrrrrrrrrrrrrrrrrrrrrsrrrrrR---R 335 666666655666666666666666666666666666666666666666666666666666666666666666666666655554433221111...1 PP RNA_pol_Rpc4 24 eddkseaksqsaekakaeeeakaekesgaeaeekkek 60 + k+e++++++e++++eee+++e+e+++e+ee++e+ T108364_1 336 RKRKKEKEEEEEEEEEEEEEEEEEDEEEEEEEEEEEE 372 1111111111111111111111111111111111111 PP == domain 2 score: -3.9 bits; conditional E-value: 6.6 RNA_pol_Rpc4 43 eakaekesgaeaeekkek 60 ++k+ k+ T108364_1 740 SKKK-----------KKR 746 1111...........111 PP >> RXT2_N RXT2-like, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 18.4 0.0055 13 54 87 .. 326 369 .. 294 378 .. 0.46 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0055 RXT2_N 54 k...........kekekeekeeeeedeegdeededdddeeeaeaa 87 + + k+++e+eeeee+ee++ee+e+d++eee+e++ T108364_1 326 RrsrrrrrrrrkR-KKEKEEEEEEEEEEEEEEEEEDEEEEEEEEE 369 0233333344322.2222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1680 (0.10303); expected 326.1 (0.02) Passed bias filter: 662 (0.0405986); expected 326.1 (0.02) Passed Vit filter: 331 (0.0202993); expected 16.3 (0.001) Passed Fwd filter: 97 (0.00594873); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.90u 0.35s 00:00:02.25 Elapsed: 00:00:00.90 # Mc/sec: 3490.21 // Query: T108364_2 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.4 0.0 0.12 12.4 0.0 2.0 3 ETRAMP Malarial early transcribed membrane protein (ET 6.5 5.2 17.9 9.3 4.7 17.9 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> ETRAMP Malarial early transcribed membrane protein (ETRAMP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 1.4e-05 0.12 11 55 .. 259 369 .. 255 375 .. 0.78 2 ? -10.1 7.1 2 1.6e+04 9 14 .. 445 450 .. 441 453 .. 0.35 3 ? -6.8 3.4 2 1.6e+04 40 46 .. 741 747 .. 735 752 .. 0.45 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 1.4e-05 ETRAMP 11 afLlavnlltpeslcdevnkkk..................................................................ekakkaikkidd 44 ++L++v +l+ +++ +e+n k +k kk+ k + + T108364_2 259 VLLYSVIILIEGYHREESNLKIskcillrvlmrlkeeeaaeeeggggggggeggeggeeggegggeeggaeeegggggrgrrrrrrrrRKRKKKKKRKRK 358 5788888999999988888654889999999999999999999999999999999999999999999999999999999999999999555555555666 PP ETRAMP 45 kiekkkkkkKl 55 k++kkkkk+K+ T108364_2 359 KMKKKKKKRKK 369 66655555543 PP == domain 2 score: -10.1 bits; conditional E-value: 2 ETRAMP 9 ffafLl 14 ff+f++ T108364_2 445 FFFFFF 450 222222 PP == domain 3 score: -6.8 bits; conditional E-value: 2 ETRAMP 40 kkiddki 46 kk++++ T108364_2 741 KKKKKEK 747 3333333 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 17.9 0.0011 9.3 113 163 .. 330 380 .. 283 385 .. 0.41 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 113 kekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdr 163 +e+ + +++ + +++++++k+k ++k+ +++k+k+k+k+k+kk e+++ T108364_2 330 EEGGGGGRGRRRRRRRRRKRKKKKKRKRKKMKKKKKKRKKKKKEKKGEEEE 380 222222222222222222222222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1590 (0.0975101); expected 326.1 (0.02) Passed bias filter: 718 (0.0440329); expected 326.1 (0.02) Passed Vit filter: 196 (0.0120201); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.35u 0.40s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 4424.21 // Query: T108364_3 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 7.0 5.1 3.5 6.4 5.1 1.2 1 DUF913 Domain of Unknown Function (DUF913) 9.5 4.8 14.0 13 4.3 14.0 1.1 1 API5 Apoptosis inhibitory protein 5 (API5) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 5.1 0.00043 3.5 267 311 .. 297 335 .. 259 378 .. 0.61 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00043 DUF913 267 sskseasssssssetkeeekssededvemedaeaetesesdeeee 311 ++k++++++++++++ +++e++e++++e+++e++++eeee T108364_3 297 QQKKKEEEEEEEEKE------EKEEKKEEKEEEKKEEQKKKEEEE 335 111111111111111......111111111111111111111111 PP >> API5 Apoptosis inhibitory protein 5 (API5) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 14.0 0.0016 13 451 518 .. 295 358 .. 271 359 .. 0.56 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.0016 API5 451 akrkapitfngsesskaakkargekkqrqqyvppsgklsnkanessgkgrgsgsrgrgrggggrGrGr 518 +k++++++ +++e++k++k+++ e+k+ + + +++k ++ +e++g+g+g g rgr r rGrGr T108364_3 295 KKQQKKKEEEEEEEEKEEKEEKKEEKE-EEKKEEQKKKEEEEEEEEGEGGGGGGRGRRR---RRGRGR 358 233333332222222222222222222.2223344444444455788888877888777...666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1921 (0.117809); expected 326.1 (0.02) Passed bias filter: 707 (0.0433583); expected 326.1 (0.02) Passed Vit filter: 309 (0.0189501); expected 16.3 (0.001) Passed Fwd filter: 56 (0.00343432); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.48u 0.35s 00:00:01.83 Elapsed: 00:00:00.60 # Mc/sec: 5235.32 // Query: T155238_1 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.55 # Mc/sec: 2569.55 // Query: T155238_2 [L=493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.59 # Mc/sec: 2390.49 // Query: T155238_3 [L=493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.54 # Mc/sec: 2611.83 // Query: T295336_1 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 8586.82 // Query: T295336_2 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 8458.66 // Query: T295336_3 [L=1980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 8714.53 // Query: T222009_1 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 5201.94 // Query: T222009_2 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 4658.46 // Query: T222009_3 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.55 # Mc/sec: 5669.64 // Query: T078924_1 [L=1841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-40 138.7 14.0 3.8e-40 138.3 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.9 7.9 11.7 1.2 7.5 11.7 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 0.93 8.2 9.9 1.6 7.4 9.9 1.3 1 Spc7 Spc7 kinetochore protein 1.2 9.1 10.2 1.3 9.0 3.0 2.3 2 BRE1 BRE1 E3 ubiquitin ligase 6.3 6.8 12.9 10 6.1 12.9 1.2 1 Tropomyosin_1 Tropomyosin like 10 6.3 10.5 16 5.7 10.5 1.2 1 Muted Organelle biogenesis, Muted-like protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.3 14.0 1.4e-43 3.8e-40 126 312 .] 145 332 .. 142 332 .. 0.96 Alignments for each domain: == domain 1 score: 138.3 bits; conditional E-value: 1.4e-43 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078924_1 145 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 242 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078924_1 243 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 332 ***************************************************************************************975 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 11.7 0.00045 1.2 412 502 .. 225 311 .. 214 324 .. 0.86 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00045 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078924_1 225 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 311 44444444....46999*******************************9999999**********************************85 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 9.9 0.00058 1.6 198 287 .. 214 303 .. 205 327 .. 0.82 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00058 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkiv 287 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ T078924_1 214 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLK 303 567788999999999999999999999999999999999999999999999999999999988888888888888888887777666654 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 2.5 0.043 1.2e+02 7 51 .. 219 263 .. 214 272 .. 0.81 2 ? 9.0 3.0 0.00046 1.3 14 69 .. 272 327 .. 261 330 .. 0.87 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.043 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaam 51 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078924_1 219 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLE 263 567777889999999999999999999999999999999877666 PP == domain 2 score: 9.0 bits; conditional E-value: 0.00046 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078924_1 272 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 327 445667788889**************************************999986 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 12.9 0.0037 10 8 102 .. 208 304 .. 205 311 .. 0.86 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0037 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078924_1 208 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 303 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078924_1 304 Q 304 5 PP >> Muted Organelle biogenesis, Muted-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 10.5 0.0058 16 56 141 .. 220 307 .. 213 312 .. 0.82 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0058 Muted 56 lpkcleslkenLsevnkkleaalekverllqkeleeeqekserlqekeekrkkeweeFlkelqkkkeevDeefeekveelk...ekYse 141 + ++++ enL ++++l++++ +++rl + e+++++ +l+++ +++++ e l++ + k +e+++ +++ +++ ++Y+e T078924_1 220 VKATVTQQGENLRRTKDELNELNCMIQRLTAE-VENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMAcmlKQYQE 307 4444555689********************99.77777799******************************999987765422256665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 322 (0.0197473); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.54 # Mc/sec: 9753.31 // Query: T078924_2 [L=1841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0051 16.3 0.0 0.0065 16.0 0.0 1.1 1 Filament Intermediate filament protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 4e-07 0.0065 87 126 .. 106 145 .. 104 147 .. 0.94 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 4e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Filament 87 lrkkyekelnkreevEaelkalrkdldeatlarvdLekkv 126 + +ye+el++r ++E+e+ l+kd+ ++l+ +dLe+ v T078924_2 106 FLLRYEEELALRATAENEFMMLKKDVGYTYLHETDLEANV 145 5679*********************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 9404.98 // Query: T078924_3 [L=1841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 8926.76 // Query: T373077_1 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0039 16.7 0.0 0.01 15.4 0.0 1.6 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.0 6.1e-07 0.01 27 73 .. 249 299 .. 231 308 .. 0.79 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 6.1e-07 ----HHHHHHHHHTTGGGGSS....S--TT----HHHHHHHHHHHTSSCCC CS Gag_MA 27 vevrkkklitlCsseWptlnv....gWPreGtfdltviakvkskvfspGke 73 +++ k li +Cs+ Wp ++ +WP++ tf++++++ + + + Gk+ T373077_1 249 PDLKPKCLIFFCSTSWPQYKLdngsKWPENSTFNFSILQDLDNSCHKMGKW 299 47788999*********996532337************9999988888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 3630.65 // Query: T373077_2 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.67 # Mc/sec: 2980.39 // Query: T373077_3 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-12 46.2 0.0 5e-12 45.7 0.0 1.1 1 Gag_p30 Gag P30 core shell protein 5.2e-07 29.3 7.7 2.6e-06 27.1 2.4 2.6 2 zf-CCHC Zinc knuckle 0.0097 15.6 6.5 0.055 13.1 2.2 2.6 2 zf-CCHC_2 Zinc knuckle ------ inclusion threshold ------ 0.013 15.1 2.6 0.013 15.1 2.6 2.5 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.035 13.9 0.9 0.081 12.8 0.9 1.6 1 zf-CCHC_3 Zinc knuckle 1.8 8.8 9.2 9.4 6.5 3.0 2.4 2 eIF3g Eukaryotic translation initiation factor 3 subunit Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.7 0.0 1.8e-15 5e-12 138 210 .. 454 526 .. 448 527 .. 0.96 Alignments for each domain: == domain 1 score: 45.7 bits; conditional E-value: 1.8e-15 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 ++pa f+ l + r +t dpe e + + + fi+qsa+dirkklq+le ++ ++l++ + kvyn re T373077_3 454 KNPAQFMAHLAATLRCFTALDPEGSEGRVILNMHFITQSAPDIRKKLQKLESSPQTPQQELINLTFKVYNNRE 526 68********************************************************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 2.4 9.5e-10 2.6e-06 2 18 .] 581 597 .. 580 597 .. 0.94 2 ? 4.6 0.3 0.012 34 11 17 .. 612 618 .. 612 619 .. 0.93 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 9.5e-10 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 C++C++ GH+a++Cp+ T373077_3 581 SCFKCQKSGHWAKECPQ 597 6***************7 PP == domain 2 score: 4.6 bits; conditional E-value: 0.012 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T373077_3 612 HWKSDCP 618 ******9 PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.1 2.2 2e-05 0.055 6 21 .] 582 597 .. 581 597 .. 0.94 2 ? 3.8 0.1 0.016 45 13 21 .] 610 619 .. 609 619 .. 0.91 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 2e-05 zf-CCHC_2 6 ChiCgkkGHyIqdCPt 21 C C+k GH+ ++CP+ T373077_3 582 CFKCQKSGHWAKECPQ 597 888************7 PP == domain 2 score: 3.8 bits; conditional E-value: 0.016 zf-CCHC_2 13 G.HyIqdCPt 21 G H+ +dCPt T373077_3 610 GpHWKSDCPT 619 88*******8 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 2.6 4.6e-06 0.013 1 18 [. 578 595 .. 578 597 .. 0.95 2 ? 4.6 4.2 0.0091 25 1 18 [. 601 617 .. 601 620 .. 0.85 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 4.6e-06 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T373077_3 578 PSGSCFKCQKSGHWAKEC 595 799*************** PP == domain 2 score: 4.6 bits; conditional E-value: 0.0091 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 pp Cp C g Hw++dC T373077_3 601 PPKPCPICA-GPHWKSDC 617 577799996.******** PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.9 3e-05 0.081 4 22 .. 579 597 .. 577 605 .. 0.85 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3e-05 zf-CCHC_3 4 saaCQkClkkGHwtYECkn 22 s C kC k GHw+ EC++ T373077_3 579 SGSCFKCQKSGHWAKECPQ 597 56799************94 PP >> eIF3g Eukaryotic translation initiation factor 3 subunit G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.4 0.0073 20 106 121 .. 581 597 .. 567 600 .. 0.88 2 ? 6.5 3.0 0.0035 9.4 107 121 .. 605 619 .. 603 622 .. 0.92 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0073 eIF3g 106 kCriCk.gdHfTskCPy 121 +C C+ H+ +CP+ T373077_3 581 SCFKCQkSGHWAKECPQ 597 6999*559********7 PP == domain 2 score: 6.5 bits; conditional E-value: 0.0035 eIF3g 107 CriCkgdHfTskCPy 121 C iC g H+ s CP T373077_3 605 CPICAGPHWKSDCPT 619 99************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3442.86 // Query: T165141_1 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 557 (0.0341592); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 12505.22 // Query: T165141_2 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.61 # Mc/sec: 12095.21 // Query: T165141_3 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-07 29.9 0.7 3.9e-07 29.1 0.7 1.3 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 3.9 6.5 10.1 24 3.8 3.0 2.4 2 DUF2981 Protein of unknown function (DUF2981) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.7 4.7e-11 3.9e-07 260 352 .. 2131 2220 .. 2125 2232 .. 0.79 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 4.7e-11 HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEESSHHHHHHHHTT-HHHHHHH CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfidktklrdylstrPalkrll 351 nk k rekG +t + +r ++d+s+et+ a+ +w++++q+lke+ +q k ++ + f dk++l++ strP k++l T165141_3 2131 NKGKETTLRREKGTMTSEER-VRPSSDFSTETMTAKTQWSEIFQVLKENTLQTWKNM-P*KYALKNESKNPGFSDKKMLKE--STRPITKEVL 2219 555555667*******9876.9******************************86554.24456677778888999999987..7888888887 PP T CS Transposase_22 352 k 352 T165141_3 2220 P 2220 4 PP >> DUF2981 Protein of unknown function (DUF2981) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 3.0 0.003 24 211 242 .. 332 363 .. 311 376 .. 0.64 2 ? 2.3 9.0 0.009 73 170 245 .. 342 414 .. 325 418 .. 0.62 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.003 DUF2981 211 nsgntansvnntpnsvdntanssdntsnsvnn 242 nta s nt s nta s nt+ s n T165141_3 332 SYRNTARSCRNTARSYRNTAGSCRNTAGSYRN 363 44566666666666666666666666666544 PP == domain 2 score: 2.3 bits; conditional E-value: 0.009 DUF2981 170 qnknsgdttgdttgdttgntdgtanynay.dnpdgkvaakdvnsgntansvnntpnsvdntanssdntsnsvnnkks 245 + s t + +t+g ta +y + p+ + +a+ s nta+s nt s n a s nt+ s n s T165141_3 342 NTARSYRNTAGSCRNTAGSYRNTAR--SYrNSPESRNTAR--SSRNTAQSYRNTARSYRNMARSCRNTARSYRNTES 414 3333333333344455555555543..3414477777776..57899999999999999999999999999888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.74 # Mc/sec: 9970.38 // Query: T078932_1 [L=1768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.22s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 9366.57 // Query: T078932_2 [L=1767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-40 138.7 14.0 3.6e-40 138.3 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.86 8.0 11.7 1.2 7.5 11.7 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 0.9 8.2 9.9 1.5 7.5 9.9 1.3 1 Spc7 Spc7 kinetochore protein 1.3 9.0 10.2 1.2 9.1 3.0 2.2 2 BRE1 BRE1 E3 ubiquitin ligase 6.3 6.8 12.9 9.7 6.2 12.9 1.1 1 Tropomyosin_1 Tropomyosin like Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.3 14.0 1.1e-43 3.6e-40 126 312 .] 71 258 .. 68 258 .. 0.96 Alignments for each domain: == domain 1 score: 138.3 bits; conditional E-value: 1.1e-43 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078932_2 71 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 168 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078932_2 169 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 258 ***************************************************************************************975 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 11.7 0.00036 1.2 412 502 .. 151 237 .. 140 250 .. 0.86 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00036 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078932_2 151 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 237 44444444....46999*******************************9999999**********************************85 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 9.9 0.00046 1.5 198 288 .. 140 230 .. 131 253 .. 0.82 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00046 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkivs 288 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ + T078932_2 140 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQ 230 5677889999999999999999999999999999999999999999999999999999999888888888888888888877776666544 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 2.5 0.035 1.1e+02 7 51 .. 145 189 .. 140 198 .. 0.81 2 ? 9.1 3.0 0.00037 1.2 14 69 .. 198 253 .. 187 256 .. 0.87 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.035 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaam 51 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078932_2 145 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLE 189 567777889999999999999999999999999999999877666 PP == domain 2 score: 9.1 bits; conditional E-value: 0.00037 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078932_2 198 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 253 445667788889**************************************999986 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 12.9 0.003 9.7 8 102 .. 134 230 .. 131 237 .. 0.86 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.003 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078932_2 134 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 229 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078932_2 230 Q 230 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 566 (0.0347111); expected 326.1 (0.02) Passed bias filter: 304 (0.0186434); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 6740.12 // Query: T078932_3 [L=1767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 9026.94 // Query: T273046_1 [L=365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1025 (0.0628603); expected 326.1 (0.02) Passed bias filter: 484 (0.0296823); expected 326.1 (0.02) Passed Vit filter: 118 (0.0072366); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 1711.81 // Query: T273046_2 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1569 (0.0962222); expected 326.1 (0.02) Passed bias filter: 306 (0.0187661); expected 326.1 (0.02) Passed Vit filter: 83 (0.00509015); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 1764.99 // Query: T273046_3 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 564 (0.0345885); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 1928.41 // Query: T142775_1 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 10278.55 // Query: T142775_2 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 10659.24 // Query: T142775_3 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 9924.12 // Query: T185652_1 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2376.24 // Query: T185652_2 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2425.75 // Query: T185652_3 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 2277.45 // Query: T342072_1 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 978 (0.0599779); expected 326.1 (0.02) Passed bias filter: 280 (0.0171716); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 3292.38 // Query: T342072_2 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 3885.01 // Query: T342072_3 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 972 (0.05961); expected 326.1 (0.02) Passed bias filter: 351 (0.0215258); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 3597.23 // Query: T229062_1 [L=6045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-35 119.7 0.0 1.4e-34 119.2 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.2 0.0 8.7e-39 1.4e-34 49 210 .] 42 239 .. 39 239 .. 0.97 Alignments for each domain: == domain 1 score: 119.2 bits; conditional E-value: 8.7e-39 GAIN 49 lenlvktvsnLLdpenresWedlqqseqgtaatkLlrtleeyalllaqnmk..ylkpvtivtpNivlsvdvldtenskearlprfpskirgqrpkdleds 146 len+++ +s+LL+p +r++We++q+se+gta+ Llr le y++++a+n++ yl+p++ivt+N++l+vd++d+ n+++ar+p f i+++ p++le+s T229062_1 42 LENIIHSGSALLAPATRAAWEQIQRSEGGTAQ--LLRRLEGYFSNVARNVQwtYLQPFVIVTTNMILAVDIFDKFNFTGARVPWFDA-IHEEFPRELESS 138 69******************************..*****************************************************.9*********** PP GAIN 147 vklpkkalke.......................................snseg.evvvvfvlYrnLgslLpepsktkyeadrrslrlpsr.vvnSpVvs 205 +++p++++k+ ++ +g + + +++Y + g+l pe y+++rrsl lp+ ++n++ vs T229062_1 139 ISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYCTPGQLPPE----PYDPNRRSLWLPHWpIINTSMVS 234 ************************************************75645****************9998....8********************** PP GAIN 206 asvsk 210 a v++ T229062_1 235 ALVYS 239 *9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.36u 0.31s 00:00:01.67 Elapsed: 00:00:00.59 # Mc/sec: 29311.39 // Query: T229062_2 [L=6045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.31s 00:00:01.71 Elapsed: 00:00:00.59 # Mc/sec: 29311.39 // Query: T229062_3 [L=6045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.33s 00:00:01.75 Elapsed: 00:00:00.60 # Mc/sec: 28822.86 // Query: T182961_1 [L=6637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.35s 00:00:01.86 Elapsed: 00:00:00.63 # Mc/sec: 30138.62 // Query: T182961_2 [L=6637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 709 (0.0434809); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.31s 00:00:02.09 Elapsed: 00:00:00.63 # Mc/sec: 30138.62 // Query: T182961_3 [L=6636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.2 3.2e+02 1.4 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.3 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.034 5.6e+02 89 121 .. 5484 5516 .. 5480 5521 .. 0.89 4 ? 0.4 0.0 0.04 6.6e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.0 0.0 0.11 1.8e+03 94 121 .. 5577 5604 .. 5567 5609 .. 0.82 6 ? 1.1 0.0 0.025 4.1e+02 88 121 .. 5615 5648 .. 5590 5652 .. 0.86 7 ? -0.7 0.0 0.091 1.5e+03 88 121 .. 5659 5692 .. 5635 5697 .. 0.79 8 ? 1.4 0.0 0.02 3.2e+02 88 121 .. 5703 5736 .. 5677 5756 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182961_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182961_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182961_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.04 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182961_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182961_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 66677777889***************96 PP == domain 6 score: 1.1 bits; conditional E-value: 0.025 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182961_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 57788899999999******************97 PP == domain 7 score: -0.7 bits; conditional E-value: 0.091 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182961_3 5659 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5692 56666677777778889***************96 PP == domain 8 score: 1.4 bits; conditional E-value: 0.02 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182961_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.61 # Mc/sec: 31122.08 // Query: T039850_1 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 7003.74 // Query: T039850_2 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-21 74.3 0.0 1.8e-20 73.3 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.0 1.1e-24 1.8e-20 67 222 .] 11 142 .. 7 142 .. 0.93 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 1.1e-24 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE..SB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek..kglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + ++++ lDlk+aF+s++l+++++kl+af+ ++ es +++ ++lpqG++ SP++f ++ + l+e+ +r+ g++ll T039850_2 11 EDRWFTCLDLKDAFFSIRLARESQKLFAFQWEDL---------------------ESVITTQYt*TRLPQGFKDSPTIFGEALARDLQEFPTRHLGCVLL 89 679*****************************33.....................445566664669********************************* PP ECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 165 rYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +Y+DD+l+ + + + + ++a+ ++l+++g+k++++K ++ +++v+yLG+t+ T039850_2 90 QYVDDLLLGHPTAVGCAKGMDALLRHLEDCGYKVSKKKAQIS-----RQQVRYLGFTI 142 ******************************************.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6753.60 // Query: T039850_3 [L=1321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-20 73.1 0.0 4.7e-20 72.1 0.0 1.4 1 RNase_H RNase H 7.2e-07 29.3 0.4 1.5e-06 28.2 0.4 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 0.0 5.8e-24 4.7e-20 5 142 .. 372 513 .. 369 514 .. 0.84 Alignments for each domain: == domain 1 score: 72.1 bits; conditional E-value: 5.8e-24 EEEEEEEEECT.TTEEEEEE.EECTT..E.EEEEEEC.CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSB CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegar.nisaple.eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkp 97 +++DGs++ n +ge+gag+ v+ + +++l+ + +++++aEL+A+i aL+ + ++++vn+ytDS Y++ + +q vh++ k+++ +s +k+ T039850_3 372 ELHVDGSSFINpQGERGAGCaVVTLD--TvVEARSLP*G-TSAQKAELIALIRALElS--EGKTVNVYTDSPYAFLT-LQ-VHGT*yKEKGL-LNSGGKD 463 589********99999****666766..31333445555.89**************55..9**************94.33.8**9*777777.7778889 PP HTT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 98 vkn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +k +e+ +ll+++ k++kv+++h++gH+ + gN aD A++aa T039850_3 464 IKYqQEILQLLEAVWKPHKVSVMHCRGHQRAstlvGLGNSLADPEARKAA 513 *9889***********************666568877**********997 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.4 1.9e-10 1.5e-06 1 38 [. 578 615 .. 578 615 .. 1.00 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.9e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 Hk+tHlG++ l++ll ++++ ++++ ++ V+++C++C T039850_3 578 HKTTHLGQESLEKLLGWYFYISHLSAPAKIVTQQCVTC 615 ************************************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7130.48 // Query: T260005_1 [L=3402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:00.61 # Mc/sec: 15954.99 // Query: T260005_2 [L=3402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.60 # Mc/sec: 16220.91 // Query: T260005_3 [L=3401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.60 # Mc/sec: 16216.14 // Query: T302015_1 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 9297.70 // Query: T302015_2 [L=1884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.59 # Mc/sec: 9135.26 // Query: T302015_3 [L=1884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 9292.77 // Query: T381535_1 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.63 # Mc/sec: 11402.45 // Query: T381535_2 [L=2510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 649 (0.0398013); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.80 # Mc/sec: 8975.85 // Query: T381535_3 [L=2510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.79 # Mc/sec: 9089.47 // Query: T357991_1 [L=1529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 758 (0.046486); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.72 # Mc/sec: 6075.29 // Query: T357991_2 [L=1529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 890 (0.0545811); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.59 # Mc/sec: 7413.91 // Query: T357991_3 [L=1528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 976 (0.0598553); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.61 # Mc/sec: 7166.14 // Query: T141824_1 [L=4104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 598 (0.0366736); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.35s 00:00:01.90 Elapsed: 00:00:00.84 # Mc/sec: 13977.20 // Query: T141824_2 [L=4104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.89 # Mc/sec: 13191.96 // Query: T141824_3 [L=4103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.39s 00:00:01.96 Elapsed: 00:00:00.76 # Mc/sec: 15444.72 // Query: T091395_1 [L=1499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.71 # Mc/sec: 6039.98 // Query: T091395_2 [L=1499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 6700.60 // Query: T091395_3 [L=1498] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1498 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 6802.42 // Query: T353739_1 [L=12484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-29 103.2 3.3 1.1e-14 53.9 0.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.6 0.2 1.4e-17 2.3e-13 205 292 .. 12156 12241 .. 12149 12246 .. 0.86 2 ! 53.9 0.4 7e-19 1.1e-14 300 357 .. 12358 12416 .. 12346 12427 .. 0.85 Alignments for each domain: == domain 1 score: 49.6 bits; conditional E-value: 1.4e-17 HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEE.EESSHHHHHHHHHHHHHHS-EEETTEEEE.EEE---HHHH CS Transposase_22 205 lkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiiv.rttkvlnkdkilkavrekGrvtlkGkPir.ltadlsaetl 292 +l ++++i+ enfPnl k++ + iq ++ tP + +skr + rhiiv + + k +ilk +r k vt+kG i+ ad+s+et T353739_1 12156 IMQLMTMFEEIMAENFPNLMKDMHINIQAAQVTPSKMNSKRPTLRHIIV*LL---KCKVRILKVARGKKLVTYKGSSIK*Q-ADFSSETW 12241 4567889*****************************************8854...46789***************998543.67777775 PP == domain 2 score: 53.9 bits; conditional E-value: 7e-19 HHHHHHHHT.T---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTTT-SS CS Transposase_22 300 dviqilkek.kfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllkekner 357 + ++lkek + q r+lyPakls++ + e k f dk+kl+++++trPal+ +lke + T353739_1 12358 IINKVLKEKkNWQKRILYPAKLSFTCEEENKTFPDKQKLKEFVTTRPALQGMLKEVLQV 12416 456799997368*******************************************5553 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 665 (0.0407825); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.96u 0.52s 00:00:04.48 Elapsed: 00:00:01.12 # Mc/sec: 31888.04 // Query: T353739_2 [L=12484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 815 (0.0499816); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.62u 0.55s 00:00:05.17 Elapsed: 00:00:01.21 # Mc/sec: 29516.20 // Query: T353739_3 [L=12484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-09 34.9 1.5 7e-08 31.8 0.7 2.5 2 DUF1725 Protein of unknown function (DUF1725) 4.8e-05 23.3 9.1 0.00014 21.8 9.1 1.8 1 DUF2054 Uncharacterized conserved protein (DUF2054) 0.001 18.5 0.0 0.0018 17.7 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.057 3.1e+02 6 15 .. 2656 2665 .. 2656 2665 .. 0.89 2 ! 31.8 0.7 1.3e-11 7e-08 1 19 [] 3056 3074 .. 3056 3074 .. 0.98 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.057 DUF1725 6 WMELEnIILS 15 + ELEn+IL+ T353739_3 2656 FTELENTILK 2665 58*******7 PP == domain 2 score: 31.8 bits; conditional E-value: 1.3e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WMELE IILS+ sQ T353739_3 3056 SFAGTWMELEAIILSKLSQ 3074 7*****************9 PP >> DUF2054 Uncharacterized conserved protein (DUF2054) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 9.1 2.7e-08 0.00014 4 116 .. 9904 9994 .. 9901 9997 .. 0.75 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 2.7e-08 DUF2054 4 ekCrnsvqgkklivDdrGivCsrsellkngCCeveeekeeekskrfsCktCdkkseCCeiyeyCvsCClepdkkelleevlekaakkrkkvllssved 101 ++C+nsvqgk livD+ G+vC+r++ll +gC + s k+C CC+ C C l p+ + ++ ++ +r+++ + T353739_3 9904 NQCQNSVQGKLLIVDEPGYVCERRDLLVQGCNV----------HSPSVKQC-----CCD---GCWPCLLLPAAQPGASPGASW--CSRTSSWQ--SKI 9979 68****************************977..........23356677.....885...689999999988866544443..23333333..256 PP DUF2054 102 qfelClakCRtsses 116 + e C akCRtss+ T353739_3 9980 SIESCPAKCRTSSQG 9994 789999999999986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 3.3e-07 0.0018 111 158 .. 2456 2503 .. 2440 2519 .. 0.84 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 3.3e-07 .............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 111 trsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++++++ +ng++ e ++ k+g++qG+ l llfn++++ l r +r++ T353739_3 2456 KPTANIILNGQKLEAFPLKTGTRQGCSLPSLLFNIVLEVLARAIRQEK 2503 56778889***99********************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.71u 0.47s 00:00:04.18 Elapsed: 00:00:01.12 # Mc/sec: 31888.04 // Query: T190307_1 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 5569.95 // Query: T190307_2 [L=1285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 5835.19 // Query: T190307_3 [L=1284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6444.40 // Query: T176334_1 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.60 # Mc/sec: 3351.94 // Query: T176334_2 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.59 # Mc/sec: 3408.75 // Query: T176334_3 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 3591.36 // Query: T238526_1 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 10.4 9.5 0.17 10.0 9.5 1.1 1 SSP160 Special lobe-specific silk protein SSP160 8.8 6.2 16.0 18 5.1 16.0 1.5 1 DUF3439 Domain of unknown function (DUF3439) Domain annotation for each model (and alignments): >> SSP160 Special lobe-specific silk protein SSP160 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 9.5 2e-05 0.17 676 711 .. 580 615 .. 557 622 .. 0.60 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 2e-05 SSP160 676 eattttssttttttttttaaptttttkaanapftyp 711 +a+ ++tttttttttt++ ttt a f y T238526_1 580 DASEPKTTTTTTTTTTTTTTTTTTLCFAPSISFYYS 615 444444444444444444444555555555555555 PP >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 16.0 0.0023 18 47 71 .. 586 610 .. 579 620 .. 0.74 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0023 DUF3439 47 ttttttttttttmpttttlptttkm 71 tttttttttttt ttttl + + T238526_1 586 TTTTTTTTTTTTTTTTTTLCFAPSI 610 6777777778888888898766555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 3299.82 // Query: T238526_2 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.2 2.2 0.022 14.6 2.2 1.1 1 Suf Suppressor of forked protein (Suf) 0.064 13.2 6.9 0.12 12.3 6.9 1.4 1 SUIM_assoc Unstructured region C-term to UIM in Ataxin3 0.19 11.9 3.2 2.5 8.3 1.3 2.2 2 CCDC117 Coiled-coil domain-containing protein 117 0.92 8.2 6.7 1.3 7.8 6.7 1.1 1 DUF2722 Protein of unknown function (DUF2722) 1 8.0 6.0 1.5 7.5 6.0 1.1 1 Androgen_recep Androgen receptor 1.2 8.5 11.0 2.2 7.7 11.0 1.3 1 Spt20 Spt20 family Domain annotation for each model (and alignments): >> Suf Suppressor of forked protein (Suf) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 2.2 8e-06 0.022 224 272 .. 568 616 .. 530 618 .. 0.85 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 8e-06 Suf 224 gaagrrleqqrksessksaeaasksqkalqqqpaplprsivallsvLPs 272 + +++ +++ +++ ++++++++++q+++qqq++pl ++ +ls++P T238526_2 568 TYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQPLSALLLPFLSTIPV 616 45667778888999**********************************6 PP >> SUIM_assoc Unstructured region C-term to UIM in Ataxin3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 6.9 4.4e-05 0.12 29 48 .. 585 604 .. 548 607 .. 0.80 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.4e-05 SUIM_assoc 29 Kqeqqqqqqqqqqdppgqls 48 Kq+qqqqqqqqqq++++ ls T238526_2 585 KQQQQQQQQQQQQQQQQPLS 604 55566666666666665555 PP >> CCDC117 Coiled-coil domain-containing protein 117 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.036 97 51 95 .. 482 522 .. 479 550 .. 0.67 2 ? 8.3 1.3 0.00091 2.5 61 106 .. 560 605 .. 552 615 .. 0.88 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.036 CCDC117 51 diltkkviesvsrssmELvlWkPleellsdklkdslqkkqrkqet 95 ++l++++ie + s E+ +Wk l ++l + s + q++ T238526_2 482 QLLPHEIIERLLLGSNEIKMWKWLCKPLRPMPSMSR----YCQDK 522 689******************987777654444433....33332 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00091 CCDC117 61 vsrssmELvlWkPleellsdklkdslqkkqrkqetaarqaktpvas 106 s+ssm L Pl ++ + + q++q +q+++++q+++p+++ T238526_2 560 FSQSSMSLTYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQPLSA 605 6899***************999999999999999999999999876 PP >> DUF2722 Protein of unknown function (DUF2722) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 6.7 0.00046 1.3 8 43 .. 566 601 .. 560 617 .. 0.58 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00046 DUF2722 8 Slidksssseqvskqqqkkesskqgsqqeqksqqqq 43 Sl + s ++ + ++++++q++qq+q++qqqq T238526_2 566 SLTYNIPLSTNTPRMPLNQKQQQQQQQQQQQQQQQQ 601 555555555555555555555554444444433333 PP >> Androgen_recep Androgen receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 6.0 0.00054 1.5 184 209 .. 577 601 .. 534 607 .. 0.56 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00054 Androgen_recep 184 astmqllqqqqqehhhqqhqhqqqqq 209 + m l q+qqq++ +qq+q+qqqqq T238526_2 577 TPRMPLNQKQQQQQ-QQQQQQQQQQQ 601 33455555555552.22222222222 PP >> Spt20 Spt20 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 11.0 0.0008 2.2 106 124 .. 583 601 .. 560 612 .. 0.52 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0008 Spt20 106 dqkqsqqnqqqqqqqqqqq 124 +qkq+qq+qqqqqqqqqqq T238526_2 583 NQKQQQQQQQQQQQQQQQQ 601 2222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1242 (0.0761683); expected 326.1 (0.02) Passed bias filter: 736 (0.0451368); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 2730.05 // Query: T238526_3 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 2852.29 // Query: T135867_1 [L=1655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.39s 00:00:01.38 Elapsed: 00:00:00.74 # Mc/sec: 6398.21 // Query: T135867_2 [L=1655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 6861.85 // Query: T135867_3 [L=1654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 7169.41 // Query: T222967_1 [L=1276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 5290.46 // Query: T222967_2 [L=1276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-16 60.7 0.0 1.8e-16 60.1 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 1.6e-11 44.4 0.0 2.7e-11 43.7 0.0 1.3 1 GATase_6 Glutamine amidotransferase domain ------ inclusion threshold ------ 0.052 12.8 0.0 0.08 12.2 0.0 1.2 1 DUF3700 Aluminium induced protein Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.1 0.0 3.3e-20 1.8e-16 24 123 .. 181 276 .. 176 277 .. 0.95 Alignments for each domain: == domain 1 score: 60.1 bits; conditional E-value: 3.3e-20 GATase_7 24 lvivfnGeiyNykelreeLeakghrfrtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkal 122 +++++nGeiyN+k++++++e ++ +tk D e++l+l+++ ++e+++ l G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se kal T222967_2 181 MWLCYNGEIYNHKKVQHQFE---FEYQTKVDGEIILHLYDK-GGIEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVRSEAKAL 275 699***************97...5689*************9.8******************************.************9779*********9 PP GATase_7 123 l 123 + T222967_2 276 R 276 6 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.7 0.0 5e-15 2.7e-11 42 130 .. 181 266 .. 175 271 .. 0.86 Alignments for each domain: == domain 1 score: 43.7 bits; conditional E-value: 5e-15 GATase_6 42 lllvhNGeiynykelreelpalkglafrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgla 130 ++l +NGeiyn+k+++ +++ + ++++D e++l+l+++ G e+++ +l+G+faf++ d++++++ l rd + gv+pl+ av+e+g++ T222967_2 181 MWLCYNGEIYNHKKVQHQFEF----EYQTKVDGEIILHLYDKGGiEQTICTLVGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFL 266 799**********99999998....33468**********9999**************************955.67778888887766665 PP >> DUF3700 Aluminium induced protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 1.5e-05 0.08 81 185 .. 185 284 .. 179 302 .. 0.76 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.5e-05 DUF3700 81 fqGslenlasLkkqyGLskta.nevllvieayrtLrDrgPypadqvvkdleGkfafvlyDskaktvfvaldad..gsvplyWGiaadgsvvisddlelvk 177 ++G++ n ++++q+ ++ ++ + +++ L D+g +q + l G fafvl Ds +k+v +ld+d g pl+ ++ dg +++ +++ ++ T222967_2 185 YNGEIYNHKKVQHQFEFEYQTkVDGEIILH----LYDKGG--IEQTICTLVGVFAFVLLDSANKKV--SLDRDt*GVRPLFKAVTEDGFLAVRSEAKALR 276 566666666666666664332034444444....447774..589999***************996..6899978899**************99999999 PP DUF3700 178 ksCgksfa 185 C + + T222967_2 277 LWCLQPLE 284 88876655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 6084.03 // Query: T222967_3 [L=1275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.70 # Mc/sec: 5210.80 // Query: T155203_1 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.68 # Mc/sec: 11699.95 // Query: T155203_2 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.73 # Mc/sec: 10898.59 // Query: T155203_3 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.28s 00:00:01.43 Elapsed: 00:00:00.75 # Mc/sec: 10607.96 // Query: T183413_1 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2166.06 // Query: T183413_2 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.059 13.9 1.2 15 6.2 0.0 4.3 5 Ig_3 Immunoglobulin domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.38 6.3e+03 51 65 .. 97 111 .. 83 116 .. 0.70 2 ? -3.9 0.0 1 1.6e+04 51 64 .. 140 153 .. 126 155 .. 0.67 3 ? 1.3 0.0 0.03 4.9e+02 50 72 .. 225 248 .. 201 259 .. 0.68 4 ? 1.2 0.1 0.031 5.1e+02 50 67 .. 278 299 .. 259 331 .. 0.70 5 ? 6.2 0.0 0.00091 15 50 76 .. 378 408 .. 346 410 .. 0.79 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.38 SSEEEETTEEEESS- CS Ig_3 51 issegssssLtisnv 65 s++++++Lti+ T183413_2 97 HYSSTDTGTLTIPAP 111 356888999999865 PP == domain 2 score: -3.9 bits; conditional E-value: 1 SSEEEETTEEEESS CS Ig_3 51 issegssssLtisn 64 s+++++ Lti+ T183413_2 140 HYSSTDTGMLTIPA 153 45677888888875 PP == domain 3 score: 1.3 bits; conditional E-value: 0.03 ESSEEEETTEEEESS--.GGG-EE CS Ig_3 50 sissegssssLtisnvt.ksdsGt 72 + s++++++Lti+ t +d Gt T183413_2 225 DHYSSTDTGTLTIPAPTrGTDMGT 248 256788888899988662334554 PP == domain 4 score: 1.2 bits; conditional E-value: 0.031 E....SSEEEETTEEEESS--G CS Ig_3 50 s....issegssssLtisnvtk 67 + s++++++Lti+ t+ T183413_2 278 RhgdaHYSSTDTGTLTIPAPTR 299 1334466788888888887665 PP == domain 5 score: 6.2 bits; conditional E-value: 0.00091 E....SSEEEETTEEEESS--GGG-EEEEEE CS Ig_3 50 s....issegssssLtisnvtksdsGtYtCv 76 ++++++ ++Lti+ t ++s +++C+ T183413_2 378 VtipaRTRGTDMGTLTIQAPTWEHSLVFQCS 408 044456779999******************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 2128.06 // Query: T183413_3 [L=423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.084 12.9 0.0 7.1 6.7 0.0 2.8 2 DUF1724 Domain of unknown function (DUF1724) Domain annotation for each model (and alignments): >> DUF1724 Domain of unknown function (DUF1724) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.00043 7.1 37 55 .. 235 253 .. 231 254 .. 0.90 2 ? 2.8 0.0 0.0072 1.2e+02 37 54 .. 378 395 .. 375 396 .. 0.88 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00043 DUF1724 37 dlisfdesAlkWGeeLFey 55 l+++ + A WG+ LF++ T183413_3 235 SLFQHRQGAPTWGRSLFQH 253 6899999**********98 PP == domain 2 score: 2.8 bits; conditional E-value: 0.0072 DUF1724 37 dlisfdesAlkWGeeLFe 54 l+++++ A WG+ LF+ T183413_3 378 SLFQHGQGAPIWGRSLFK 395 5889999999*******7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.65 # Mc/sec: 1861.74 // Query: T062843_1 [L=1652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1934 (0.118607); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 123 (0.00754324); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.38s 00:00:01.94 Elapsed: 00:00:00.68 # Mc/sec: 6950.13 // Query: T062843_2 [L=1651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2458 (0.150742); expected 326.1 (0.02) Passed bias filter: 338 (0.0207286); expected 326.1 (0.02) Passed Vit filter: 190 (0.0116522); expected 16.3 (0.001) Passed Fwd filter: 63 (0.00386361); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.10u 0.52s 00:00:03.62 Elapsed: 00:00:01.02 # Mc/sec: 4630.62 // Query: T062843_3 [L=1651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 4002 (0.245431); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 286 (0.0175396); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.98u 0.48s 00:00:03.46 Elapsed: 00:00:01.11 # Mc/sec: 4255.16 // Query: T165302_1 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 4877.48 // Query: T165302_2 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 4958.77 // Query: T165302_3 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 4872.79 // Query: T050205_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.74 # Mc/sec: 2307.99 // Query: T050205_2 [L=596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 ssDNA-exonuc_C Single-strand DNA-specific exonuclease, C ter 0.22 11.4 2.5 0.38 10.7 2.5 1.3 1 MNE1 Mitochondrial splicing apparatus component Domain annotation for each model (and alignments): >> ssDNA-exonuc_C Single-strand DNA-specific exonuclease, C terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 2.5e-05 0.21 148 185 .. 386 423 .. 385 429 .. 0.92 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2.5e-05 ssDNA-exonuc_C 148 feLeFvtiedgvislvenpekrdLtesptYqerlekie 185 f++ +v+ + g++s+ ++p +++L +s++Y++ ++ ++ T050205_2 386 FDVHLVKVQVGLLSIIKAPGSQSLAKSRLYKKIQKLAR 423 8999***************************9998765 PP >> MNE1 Mitochondrial splicing apparatus component # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 2.5 4.6e-05 0.38 44 105 .. 247 312 .. 229 336 .. 0.68 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 4.6e-05 MNE1 44 iLnhlavekn.fsgvvslleklvklnssnligsldnss....fhillkslsnSssakltsltLfkfL 105 iL+ +++ n +s ++sl++ +++l + + + l++ss f ll+sls+Sss+ t+l Lf L T050205_2 247 ILSLIVIIINlISVIISLINVIISLITVII-SPLSSSSstllFSSLLTSLSSSSSSPSTALFLFFIL 312 444444433315677777777777666655.444444423337888899999999999999999665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 755 (0.046302); expected 326.1 (0.02) Passed bias filter: 284 (0.0174169); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 2795.17 // Query: T050205_3 [L=596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 510 (0.0312768); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.67 # Mc/sec: 2544.86 // Query: T099911_1 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 5588.69 // Query: T099911_2 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.75 # Mc/sec: 5286.81 // Query: T099911_3 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 6007.74 // Query: T300736_1 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 4162.51 // Query: T300736_2 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0039 17.1 4.3 0.011 15.6 4.4 1.8 1 Mucin-like Mucin-like ------ inclusion threshold ------ 4.1 6.3 8.0 6.5 5.7 8.0 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 4.4 1.4e-06 0.011 7 87 .. 190 270 .. 178 274 .. 0.84 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.4e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300736_2 190 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 270 445566678889999999999999999999999999999999999999999999999999999888899999999999877 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 8.0 0.00079 6.5 242 305 .. 212 270 .. 182 285 .. 0.62 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00079 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300736_2 212 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 270 2334444444444444444444444444432.....2466777777777777777777766666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 4306.04 // Query: T300736_3 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-09 36.7 0.7 6e-09 35.8 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 1.7e-06 27.9 4.4 4e-06 26.7 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.8 0.7 7.3e-13 6e-09 2 62 .. 367 428 .. 366 431 .. 0.86 Alignments for each domain: == domain 1 score: 35.8 bits; conditional E-value: 7.3e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300736_3 367 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 428 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 4.4 5e-10 4e-06 10 82 .. 282 354 .. 269 361 .. 0.54 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 5e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300736_3 282 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 354 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 3468.76 // Query: T124756_1 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 19759.12 // Query: T124756_2 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:00.64 # Mc/sec: 18215.44 // Query: T124756_3 [L=4075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.57 # Mc/sec: 20099.80 // Query: T357975_1 [L=981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1130 (0.0692996); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 5612.95 // Query: T357975_2 [L=980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1531 (0.0938918); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 5289.84 // Query: T357975_3 [L=980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1227 (0.0752484); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.48 # Mc/sec: 5840.86 // Query: T156839_1 [L=2788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 14501.81 // Query: T156839_2 [L=2788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 14501.81 // Query: T156839_3 [L=2787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.55 # Mc/sec: 14496.61 // Query: T189155_1 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4123.91 // Query: T189155_2 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4280.03 // Query: T189155_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 4042.25 // Query: T138134_1 [L=8418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1423 (0.0872685); expected 326.1 (0.02) Passed bias filter: 389 (0.0238562); expected 326.1 (0.02) Passed Vit filter: 130 (0.00797253); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.38u 0.48s 00:00:03.86 Elapsed: 00:00:00.79 # Mc/sec: 30484.14 // Query: T138134_2 [L=8418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1328 (0.0814424); expected 326.1 (0.02) Passed bias filter: 394 (0.0241629); expected 326.1 (0.02) Passed Vit filter: 124 (0.00760456); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.45u 0.50s 00:00:03.95 Elapsed: 00:00:00.81 # Mc/sec: 29731.44 // Query: T138134_3 [L=8418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1205 (0.0738992); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.50s 00:00:03.19 Elapsed: 00:00:00.76 # Mc/sec: 31687.46 // Query: T172969_1 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4828.38 // Query: T172969_2 [L=826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 4726.09 // Query: T172969_3 [L=826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 4633.42 // Query: T021937_1 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3444.44 // Query: T021937_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3376.90 // Query: T021937_3 [L=601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3438.72 // Query: T348532_1 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 5155.22 // Query: T348532_2 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 5054.13 // Query: T348532_3 [L=901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 4863.41 // Query: T001710_1 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 10569.47 // Query: T001710_2 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 10198.61 // Query: T001710_3 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 10569.47 // Query: T236020_1 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 10961.50 // Query: T236020_2 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.60 # Mc/sec: 10413.42 // Query: T236020_3 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 11360.10 // Query: T071141_1 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 11157.24 // Query: T071141_2 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 11360.10 // Query: T071141_3 [L=2184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.55 # Mc/sec: 11360.10 // Query: T181901_1 [L=1411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 612 (0.0375322); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 7616.29 // Query: T181901_2 [L=1410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 7757.25 // Query: T181901_3 [L=1410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 556 (0.0340979); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 7334.13 // Query: T275606_1 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 13353.95 // Query: T275606_2 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.74 # Mc/sec: 10105.69 // Query: T275606_3 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.74 # Mc/sec: 10105.69 // Query: T159427_1 [L=9993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.49u 0.41s 00:00:02.90 Elapsed: 00:00:00.77 # Mc/sec: 37127.63 // Query: T159427_2 [L=9993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-07 29.8 1.1 8.3e-07 28.9 1.1 1.5 1 BAGE B melanoma antigen family Domain annotation for each model (and alignments): >> BAGE B melanoma antigen family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 1.1 5.1e-11 8.3e-07 6 28 .] 179 201 .. 179 201 .. 0.97 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 5.1e-11 BAGE 6 vmLAASAQALEAkLskeDLPvLA 28 v+LA+SAQ+L+A+L+ke +Pv++ T159427_2 179 VFLALSAQLLQARLMKEVSPVVS 201 8********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.77u 0.44s 00:00:03.21 Elapsed: 00:00:00.95 # Mc/sec: 30092.92 // Query: T159427_3 [L=9992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.58u 0.41s 00:00:02.99 Elapsed: 00:00:00.75 # Mc/sec: 38113.88 // Query: T099789_1 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 2458.19 // Query: T099789_2 [L=464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 2328.82 // Query: T099789_3 [L=463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.68 # Mc/sec: 1947.89 // Query: T218394_1 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.07 11.3 14.3 0.086 11.0 14.3 1.0 1 CDC45 CDC45-like protein 0.57 9.9 30.3 0.79 9.5 30.3 1.1 1 eIF3_subunit Translation initiation factor eIF3 subunit 0.89 9.7 24.7 1.3 9.2 24.7 1.2 1 PcfK PcfK-like protein 1.7 8.6 11.1 2.5 8.1 11.1 1.2 1 Eapp_C E2F-associated phosphoprotein 2.2 7.5 12.7 3 7.1 12.7 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 4 6.4 23.6 5.7 5.9 23.6 1.1 1 FLO_LFY Floricaula / Leafy protein 4.1 7.3 7.3 5.6 6.9 7.3 1.1 1 DDHD DDHD domain 4.9 7.3 21.6 7 6.8 21.6 1.1 1 DUF3807 Protein of unknown function (DUF3807) 9.3 5.2 6.4 12 4.9 6.4 1.1 1 Zip ZIP Zinc transporter Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 14.3 4.7e-05 0.086 137 193 .. 84 141 .. 63 182 .. 0.47 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 4.7e-05 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeee...edeeersrkrrrse 193 ee e+++e++++++++++++++++++++kkkrk+k++eeee+ + + + +rkr+r++ T218394_1 84 EE--EEEEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKkkgRGRGNGKRKRKRKQ 141 22..22222222222223333333333333344433333333322222223333333333 PP >> eIF3_subunit Translation initiation factor eIF3 subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 30.3 0.00044 0.79 38 81 .. 84 126 .. 66 142 .. 0.47 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00044 eIF3_subunit 38 daeeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrk 81 ++eeeee++k+k+kk++++k+k++k+kkkk+kk+k +e+e ++k T218394_1 84 EEEEEEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEE-KKK 126 3334444333333333333333333333333333333333.111 PP >> PcfK PcfK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 24.7 0.00071 1.3 67 120 .. 67 124 .. 63 129 .. 0.47 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00071 PcfK 67 veYfeeddievtk......eeekaekradavskkqkekkkakkkkpeeekkkkkkkekke 120 ++Yfee++ + eee++ek++++++kk+k+kkk+kkkk+ +++kkkk++e+++ T218394_1 67 KKYFEEEEGRG-RgggggeEEEEEEKKKKKKKKKKKKKKKKKKKKK-KKRKKKKEEEEEK 124 589*9999544.3599995333344443333333333333333333.2222222222222 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 11.1 0.0014 2.5 81 113 .. 92 124 .. 83 174 .. 0.49 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0014 Eapp_C 81 sekkkkkkkkkkkkeekeeeaeaeeaeeeeeee 113 ++kkkkkkkkkkkk++k++++++++++eeeee+ T218394_1 92 KKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEK 124 111111111111111111111111111111111 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 12.7 0.0017 3 29 66 .. 88 125 .. 68 162 .. 0.48 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0017 SpoIIP 29 keekekeeeeeeekeeeeeeeikkeekeeekekeedse 66 +eek+k+++++++k+++++++ kk++++++ke+ee+++ T218394_1 88 EEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKK 125 11111111111111111111111111111111111111 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 23.6 0.0031 5.7 150 223 .. 66 138 .. 62 141 .. 0.52 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0031 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX-- CS FLO_LFY 150 eepvqqekeaagsGGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessaggsgggerqre 223 + +e+e+ g GG g +ee ++++k+kk++++kk++++k+ +++ ++ ++ +e+ee++++ g+g+g+r+r+ T218394_1 66 TKKYFEEEEGRGRGGGGGEEEEEEEKKKKKKKKKKKKKKKKKKKKK-KKRKKKKEEEEEKKKGRGRGNGKRKRK 138 5556678888888888776665555555555544443343333333.333333333333333344555888875 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 7.3 0.0031 5.6 134 170 .. 88 124 .. 65 182 .. 0.51 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0031 DDHD 134 laesqksherssesskesqeskaaesssasssaksss 170 ++e++k+++++++++k+++++k+++++++++++++++ T218394_1 88 EEEKKKKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEK 124 1111111111111111111111111111111111111 PP >> DUF3807 Protein of unknown function (DUF3807) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 21.6 0.0038 7 83 135 .. 86 136 .. 64 146 .. 0.35 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0038 DUF3807 83 eedkeaedssseeseeqekkkkkakkskkkkkrakkakekkkkkeekkidlrk 135 ee++e++ +++++++++kkkkk+kk+kkk+k++k+++e+kkk++ + + +rk T218394_1 86 EEEEEKK--KKKKKKKKKKKKKKKKKKKKKRKKKKEEEEEKKKGRGRGNGKRK 136 1111111..11222222222222222222222222222222222222333333 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 6.4 0.0066 12 119 158 .. 89 127 .. 65 187 .. 0.52 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0066 Zip 119 sesaakksvsndkveeseekedhvaeadtdadskeelrng 158 +e+++kk+ +++k +++++k +++++ +++++++ee+++g T218394_1 89 EEKKKKKKKKKKKKKKKKKK-KKKKKRKKKKEEEEEKKKG 127 11111111111111111111.1111111111222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2692 (0.165093); expected 326.1 (0.02) Passed bias filter: 1087 (0.0666626); expected 326.1 (0.02) Passed Vit filter: 470 (0.0288237); expected 16.3 (0.001) Passed Fwd filter: 66 (0.00404759); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.61 # Mc/sec: 1908.78 // Query: T218394_2 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0058 15.0 12.5 0.0091 14.3 12.5 1.2 1 Rrn6 RNA polymerase I-specific transcription-initiat ------ inclusion threshold ------ 1.7 9.0 4.6 3.4 8.0 4.6 1.5 1 DUF3682 Protein of unknown function (DUF3682) 1.9 7.0 20.9 2.5 6.6 20.9 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 2.3 6.3 18.3 3 5.9 18.3 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 12.5 2.2e-06 0.0091 697 823 .. 41 165 .. 25 171 .. 0.61 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.2e-06 Rrn6 697 edpvaalsrytklikssplsls.revsniLshWevgsdpdeydwqrtessleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsksssss 795 + +v+ l++ l+++ +++++ + +niL +++++++e +++r +++ +++ +r+r+rr++++rrrr+++ + r+r+++ +++ + + + + s T218394_2 41 QGTVTELRSSGVLDQPGQQNKTsSLPKNILKKKKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRRRRRGRRRRRRRRRRRRGGGGGMGRGRGRGS 140 4555556666666666666666333577777777776666666666666666545566666666666666666666666666666666666666666666 PP Rrn6 796 ssqlpsssqvpvlpsfslsmqissSQvv 823 ss + + s+++vl +++ sSQ++ T218394_2 141 SSEVNAGSNQTVLWH---HPMTGSSQIG 165 666666666666666...6788999986 PP >> DUF3682 Protein of unknown function (DUF3682) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 4.6 0.00084 3.4 90 107 .. 71 88 .. 49 101 .. 0.62 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00084 DUF3682 90 htrqeeeEeeeenekqqq 107 ++++eeeEeeee++k+++ T218394_2 71 KKKKEEEEEEEEEKKRKK 88 345555555554555444 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 20.9 0.00061 2.5 114 171 .. 66 123 .. 39 150 .. 0.42 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00061 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 114 ekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekerer 171 k+ +kkk+ee+e e+ek+rk+k+ + ++rr + +++ + +++ ++ r + ++r r T218394_2 66 PKNILKKKKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRRRRRGRRRRRRRRR 123 2222222222222222222222222222222222222222222222222222221111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 18.3 0.00074 3 156 202 .. 73 117 .. 35 141 .. 0.44 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00074 CDC45 156 eeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrr 202 ++eee+eee++kkrk+k++++++++++++r+r+rrr++ +++ rrr T218394_2 73 KKEEEEEEEEEKKRKKKKRRRRRRRRRRRRRRRRRRRR--RRRGRRR 117 11111111112222211111111111111111111111..1111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1817 (0.111431); expected 326.1 (0.02) Passed bias filter: 797 (0.0488777); expected 326.1 (0.02) Passed Vit filter: 224 (0.0137373); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 2156.22 // Query: T218394_3 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 10.5 6.3 0.22 10.1 6.3 1.1 1 NPR3 Nitrogen Permease regulator of amino acid transpo 0.58 10.1 3.4 0.84 9.6 3.4 1.3 1 Eapp_C E2F-associated phosphoprotein 0.78 8.3 5.0 1.1 7.8 5.0 1.2 1 Presenilin Presenilin 2 6.4 19.8 2.6 6.0 19.8 1.0 1 Nop14 Nop14-like family 5.4 7.4 20.6 9.1 6.7 20.6 1.4 1 PBP1_TM Transmembrane domain of transglycosylase PBP1 at 6 7.5 16.0 10 6.7 16.0 1.3 1 FYDLN_acid Protein of unknown function (FYDLN_acid) 6.9 7.0 8.6 11 6.3 8.6 1.3 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle traffi Domain annotation for each model (and alignments): >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 6.3 9.4e-05 0.22 49 96 .. 75 118 .. 63 180 .. 0.47 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 9.4e-05 NPR3 49 kkkkkskrkrssrskekkskesskksesssksesseekksskeseese 96 k+k++ +r+r++r+++ e+++++e+++++e++ee+++++e+ee+ T218394_3 75 KRKRRRRRRRRGRRRK----EEEEEEEEEEEEEEEEEEEEEEEEEEEG 118 1111111111111111....1111111111111111111111111111 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 3.4 0.00036 0.84 81 114 .. 79 112 .. 71 183 .. 0.62 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00036 Eapp_C 81 sekkkkkkkkkkkkeekeeeaeaeeaeeeeeeee 114 ++++++ +++k++ee+eee+e+ee+eeeeeeee T218394_3 79 RRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEE 112 1222222222222222222222222222211111 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 5.0 0.00047 1.1 264 320 .. 82 146 .. 26 167 .. 0.46 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00047 Presenilin 264 seksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeeeses.....................e 320 +++++++++eeeeeee++e+e+e+ee++ee+eeee e + + T218394_3 82 RRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEEGGGGGE-------------Eegegegeweeeeeeeaalr*mQ 146 111111111111111111111111111111111111111111.............01111222222222233444440 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 19.8 0.0011 2.6 364 407 .. 91 138 .. 56 147 .. 0.40 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0011 Nop14 364 eseeeeeeeeedeeeeedeeeeeeeeededdlsdlese.....eeeeed 407 e+eeee eeee+eeeee+eeeeeeeee+ ++e e eeeee+ T218394_3 91 EEEEEE-EEEEEEEEEEEEEEEEEEEEEGGGGGEEEGEgegewEEEEEE 138 111111.111111111111111111111111111111122322222222 PP >> PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 20.6 0.0039 9.1 11 53 .. 71 113 .. 71 139 .. 0.58 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0039 PBP1_TM 11 RkGkkskakparkkasrrrrrdddyddeyddeedddddddeee 53 R+ +k+k++ r+++ rrr+ +++ ++e ++ee+++++++eee T218394_3 71 RRRRKRKRRRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEE 113 5666666665566666655555544443333333333333333 PP >> FYDLN_acid Protein of unknown function (FYDLN_acid) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 16.0 0.0044 10 45 85 .. 78 127 .. 71 143 .. 0.29 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0044 FYDLN_acid 45 raaaaeaeeekkkkeaeedeedeeeeedvsdedadeeeee.........d 85 r+ +++++ +++k+e+ee+ee+eeeee++++e+++eeeee + T218394_3 78 RRRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEEgggggeeegE 127 22222222222222222222222222222222222222223565443220 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 8.6 0.0049 11 71 111 .. 77 117 .. 63 130 .. 0.40 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0049 Afi1 71 nklekrkkkksededdvdeedeeeeddnedldelskdeeek 111 +++++r+++ ++++++++ee+eeee+++e+++e ++ eee+ T218394_3 77 KRRRRRRRRGRRRKEEEEEEEEEEEEEEEEEEEEEEEEEEE 117 22222222222222222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1448 (0.0888017); expected 326.1 (0.02) Passed bias filter: 727 (0.0445848); expected 326.1 (0.02) Passed Vit filter: 271 (0.0166196); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 1591.09 // Query: T006791_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 3944.19 // Query: T006791_2 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 3875.96 // Query: T006791_3 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4073.05 // Query: T196599_1 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.32 10.7 9.6 0.5 10.0 5.8 2.4 2 Ephrin_rec_like Putative ephrin-receptor like 9.2 6.6 8.8 1.9 8.9 3.6 2.4 2 TNFR_c6 TNFR/NGFR cysteine-rich region Domain annotation for each model (and alignments): >> Ephrin_rec_like Putative ephrin-receptor like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.3 0.015 1.2e+02 10 22 .. 547 559 .. 543 564 .. 0.73 2 ? 10.0 5.8 6.2e-05 0.5 5 40 .. 558 596 .. 554 602 .. 0.75 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.015 Ephrin_rec_like 10 tCipCprgtYqne 22 C Cp g++ ++ T196599_1 547 LCLRCPVGHFCPN 559 5888888887664 PP == domain 2 score: 10.0 bits; conditional E-value: 6.2e-05 Ephrin_rec_like 5 ntgletCipCprgtYqn...eegqlsClaCPlgtttkkp 40 ++ + + ipC+ gt+ + + ++C++CP+g+ ++ T196599_1 558 PNRATRPIPCQPGTFGPrlgQDEATDCTPCPAGRACTQA 596 55566669*********555556689*****99876665 PP >> TNFR_c6 TNFR/NGFR cysteine-rich region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.2 0.28 2.3e+03 1 9 [. 551 559 .. 544 563 .. 0.58 2 ? 8.9 3.6 0.00023 1.9 1 29 [. 567 595 .. 567 608 .. 0.73 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.28 --TTEECCC CS TNFR_c6 1 CpegtYtdn 9 Cp g++++n T196599_1 551 CPVGHFCPN 559 555555444 PP == domain 2 score: 8.9 bits; conditional E-value: 0.00023 --TTEECCCTCTCSEEEEE-BGCTEEECC CS TNFR_c6 1 CpegtYtdnenskeClpCtrCppgqvvlr 29 C++gt+ ++ ++ e Ct+Cp+g ++ T196599_1 567 CQPGTFGPRLGQDEATDCTPCPAGRACTQ 595 ******87776668999999998865444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3944.64 // Query: T196599_2 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3598.62 // Query: T196599_3 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 3870.22 // Query: T212056_1 [L=8420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.37s 00:00:02.81 Elapsed: 00:00:00.88 # Mc/sec: 27372.94 // Query: T212056_2 [L=8420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.56u 0.40s 00:00:02.96 Elapsed: 00:00:00.84 # Mc/sec: 28676.42 // Query: T212056_3 [L=8420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.65u 0.42s 00:00:03.07 Elapsed: 00:00:01.00 # Mc/sec: 24088.19 // Query: T354627_1 [L=1058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 5310.10 // Query: T354627_2 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 5929.21 // Query: T354627_3 [L=1057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 4877.25 // Query: T032434_1 [L=940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 5171.50 // Query: T032434_2 [L=940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0069 15.9 1.3 0.013 15.0 1.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 1.3 7.9e-07 0.013 6 19 .] 41 54 .. 38 54 .. 0.92 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 7.9e-07 DUF1725 6 WMELEnIILSEisQ 19 WM LE+I+L EisQ T032434_2 41 WMNLEDIMLCEISQ 54 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 4268.54 // Query: T032434_3 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.68 # Mc/sec: 3950.47 // Query: T090195_1 [L=2320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1241 (0.076107); expected 326.1 (0.02) Passed bias filter: 378 (0.0231817); expected 326.1 (0.02) Passed Vit filter: 195 (0.0119588); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.47u 0.54s 00:00:04.01 Elapsed: 00:00:01.08 # Mc/sec: 6145.49 // Query: T090195_2 [L=2320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1301 (0.0797866); expected 326.1 (0.02) Passed bias filter: 379 (0.023243); expected 326.1 (0.02) Passed Vit filter: 213 (0.0130627); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.83u 0.49s 00:00:04.32 Elapsed: 00:00:01.09 # Mc/sec: 6089.11 // Query: T090195_3 [L=2319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1410 (0.0864712); expected 326.1 (0.02) Passed bias filter: 415 (0.0254508); expected 326.1 (0.02) Passed Vit filter: 235 (0.0144119); expected 16.3 (0.001) Passed Fwd filter: 72 (0.00441555); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.12u 0.46s 00:00:04.58 Elapsed: 00:00:01.22 # Mc/sec: 5437.92 // Query: T234590_1 [L=2513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 12185.20 // Query: T234590_2 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 10415.08 // Query: T234590_3 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.80 # Mc/sec: 8983.01 // Query: T339232_1 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.62 # Mc/sec: 5301.76 // Query: T339232_2 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 4901.84 // Query: T339232_3 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 88 (0.00539679); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 5383.99 // Query: T199603_1 [L=2144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.83 # Mc/sec: 7389.90 // Query: T199603_2 [L=2144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 9436.34 // Query: T199603_3 [L=2143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.71 # Mc/sec: 8634.87 // Query: T184064_1 [L=4015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 627 (0.0384521); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.36s 00:00:02.04 Elapsed: 00:00:00.73 # Mc/sec: 15734.57 // Query: T184064_2 [L=4015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 473 (0.0290077); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.78 # Mc/sec: 14725.94 // Query: T184064_3 [L=4015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 820 (0.0502882); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.38s 00:00:02.09 Elapsed: 00:00:00.84 # Mc/sec: 13674.09 // Query: T168200_1 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.70 # Mc/sec: 4605.94 // Query: T168200_2 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.69 # Mc/sec: 4672.69 // Query: T168200_3 [L=1127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 5117.71 // Query: T203106_1 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.5 8.6 6.3 2.2 8.0 6.3 1.3 1 TFIIA Transcription factor IIA, alpha/beta subunit Domain annotation for each model (and alignments): >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 6.3 0.00014 2.2 58 267 .. 265 455 .. 242 603 .. 0.44 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00014 TFIIA 58 pqfvlqlpqslkqalqasaaaa....sqapastsqslpslvipagksvqsftanssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqq 153 p+ + +p+s+++ +++s++ + s+++ s s++ psl+ p+ +s++ +++s++ +++ + p++++p+ p++ T203106_1 265 PSSTSPSPSSTSPSSSPSSSSTspsaSPTSTSPSSTSPSLTSPSLSSISPSASSTSPSPSSSSTSPTSTSPSSTSPSSSP-------------------- 344 11111111111111111000001111111111111111111111111111111222222222222222222222222111.................... PP TFIIA 154 iaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekq..................................qqqqqqqqqqqqqq.qvqqqq 218 + + ++++++q+++++ + + q++ T203106_1 345 ---------------------SP---------------------Sltsp*plplpsstspspsssstqhhhhhhlqhyhHHHHHHQHHHNHHHyHRLQHH 402 .....................11.....................01112222222222222211111111111111110111111111111111111111 PP TFIIA 219 qeesqqaqqasqe.............qlag.sqvessqtdgaedaleeespvlegelsaeeea 267 + + q + ++ ++g +++lee++ ++++ + +e+e+ T203106_1 403 HH----------Yhhh*hcchhhhhlQHHHhHHDLLGAQEGVSSHLEESTLMMRFGIFTEQEN 455 11..........122232222222211111111123333344444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1408 (0.0863486); expected 326.1 (0.02) Passed bias filter: 284 (0.0174169); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.42s 00:00:01.50 Elapsed: 00:00:00.69 # Mc/sec: 3068.14 // Query: T203106_2 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1619 (0.0992886); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 3470.52 // Query: T203106_3 [L=739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1339 (0.082117); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 3523.59 // Query: T370530_1 [L=2536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.70 # Mc/sec: 10364.38 // Query: T370530_2 [L=2536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.64 # Mc/sec: 11336.04 // Query: T370530_3 [L=2536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:00.78 # Mc/sec: 9301.37 // Query: T126170_1 [L=2106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.82 # Mc/sec: 7347.45 // Query: T126170_2 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.75 # Mc/sec: 8029.40 // Query: T126170_3 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 8855.95 // Query: T119766_1 [L=1990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 8497.09 // Query: T119766_2 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 8492.82 // Query: T119766_3 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.80 # Mc/sec: 7112.74 // Query: T361826_1 [L=3965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.68 # Mc/sec: 16681.16 // Query: T361826_2 [L=3964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.35s 00:00:01.87 Elapsed: 00:00:00.78 # Mc/sec: 14538.88 // Query: T361826_3 [L=3964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.33s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 15972.30 // Query: T276598_1 [L=634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 2834.01 // Query: T276598_2 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.65 # Mc/sec: 2786.01 // Query: T276598_3 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.77 9.6 23.4 37 4.2 0.3 8.2 12 SspN Small acid-soluble spore protein N family 6 6.8 20.3 84 3.1 0.1 8.2 9 DUF1967 Domain of unknown function (DUF1967) Domain annotation for each model (and alignments): >> SspN Small acid-soluble spore protein N family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.2 0.045 3.7e+02 21 31 .. 432 442 .. 420 445 .. 0.54 2 ? 3.1 0.3 0.01 85 21 36 .. 432 447 .. 427 457 .. 0.89 3 ? 2.2 0.2 0.02 1.6e+02 23 37 .. 446 460 .. 442 471 .. 0.62 4 ? 1.5 0.1 0.033 2.7e+02 22 36 .. 457 471 .. 456 481 .. 0.82 5 ? 1.7 0.2 0.028 2.3e+02 22 37 .. 469 484 .. 463 493 .. 0.80 6 ? 1.5 0.2 0.032 2.6e+02 22 36 .. 481 495 .. 477 505 .. 0.84 7 ? 1.4 0.0 0.034 2.8e+02 22 37 .. 493 508 .. 491 511 .. 0.87 8 ? 3.5 0.1 0.008 65 21 36 .. 528 543 .. 526 545 .. 0.92 9 ? -0.5 0.1 0.14 1.1e+03 22 36 .. 541 555 .. 535 560 .. 0.78 10 ? 3.1 0.1 0.011 87 21 36 .. 564 579 .. 562 581 .. 0.92 11 ? 4.2 0.3 0.0046 37 21 37 .. 588 604 .. 583 617 .. 0.90 12 ? -1.2 0.1 0.23 1.9e+03 21 36 .. 612 627 .. 607 629 .. 0.83 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.045 SspN 21 rkaggNkGkkM 31 rkag+ +G++M T276598_3 432 RKAGARRGEQM 442 45555555555 PP == domain 2 score: 3.1 bits; conditional E-value: 0.01 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276598_3 432 RKAGARRGEQMITKAG 447 89999******99988 PP == domain 3 score: 2.2 bits; conditional E-value: 0.02 SspN 23 aggNkGkkMqdksge 37 ag+ +G++M +k g T276598_3 446 AGAWRGEQMLTKAGA 460 566667777776664 PP == domain 4 score: 1.5 bits; conditional E-value: 0.033 SspN 22 kaggNkGkkMqdksg 36 kag+ +G++M +k g T276598_3 457 KAGARRGEQMLTKAG 471 688889999999987 PP == domain 5 score: 1.7 bits; conditional E-value: 0.028 SspN 22 kaggNkGkkMqdksge 37 kag+ +G++M +k g T276598_3 469 KAGAWRGEQMLTKAGA 484 6788889999998885 PP == domain 6 score: 1.5 bits; conditional E-value: 0.032 SspN 22 kaggNkGkkMqdksg 36 kag+ +G++M +k g T276598_3 481 KAGARRGEQMLTKAG 495 788899999999987 PP == domain 7 score: 1.4 bits; conditional E-value: 0.034 SspN 22 kaggNkGkkMqdksge 37 kag+ +G++M +k g T276598_3 493 KAGAWRGEQMLTKAGA 508 789999*******996 PP == domain 8 score: 3.5 bits; conditional E-value: 0.008 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276598_3 528 RKAGAQRGEQMLTKAG 543 89***********998 PP == domain 9 score: -0.5 bits; conditional E-value: 0.14 SspN 22 kaggNkGkkMqdksg 36 kag+ +G++M k g T276598_3 541 KAGAWRGEQMLRKAG 555 677888999988777 PP == domain 10 score: 3.1 bits; conditional E-value: 0.011 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G++M +k g T276598_3 564 RKAGARRGEQMLTKAG 579 899**********998 PP == domain 11 score: 4.2 bits; conditional E-value: 0.0046 SspN 21 rkaggNkGkkMqdksge 37 rkag+ +G++M +k g T276598_3 588 RKAGAQRGEQMLTKAGA 604 899999*****999986 PP == domain 12 score: -1.2 bits; conditional E-value: 0.23 SspN 21 rkaggNkGkkMqdksg 36 rkag+ +G+ M k g T276598_3 612 RKAGARRGEEMLRKAG 627 7899999999988877 PP >> DUF1967 Domain of unknown function (DUF1967) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.0 0.054 4.4e+02 39 59 .. 408 428 .. 407 431 .. 0.88 2 ? 1.1 0.0 0.042 3.4e+02 47 60 .. 428 441 .. 428 444 .. 0.87 3 ? -1.0 0.0 0.19 1.6e+03 47 60 .. 452 465 .. 452 469 .. 0.87 4 ? -0.8 0.0 0.16 1.3e+03 47 59 .. 476 488 .. 466 491 .. 0.87 5 ? 3.1 0.1 0.01 84 47 60 .. 524 537 .. 501 540 .. 0.74 6 ? 1.2 0.1 0.039 3.2e+02 47 60 .. 548 561 .. 539 562 .. 0.90 7 ? 2.6 0.3 0.015 1.2e+02 47 59 .. 560 572 .. 548 578 .. 0.63 8 ? 1.9 0.1 0.025 2e+02 47 59 .. 584 596 .. 582 599 .. 0.89 9 ? 1.3 0.1 0.038 3.1e+02 47 60 .. 608 621 .. 604 623 .. 0.89 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.054 HHHHHTTHHHHHHTTT--TT- CS DUF1967 39 rrLkklGvedaLrkaGakeGd 59 rrL+ L kaGa+ G+ T276598_3 408 RRLRAVQTSHMLTKAGARRGE 428 6889999999*********97 PP == domain 2 score: 1.1 bits; conditional E-value: 0.042 HHHHHTTT--TT-E CS DUF1967 47 edaLrkaGakeGdt 60 e+ LrkaGa+ G++ T276598_3 428 EQMLRKAGARRGEQ 441 679********985 PP == domain 3 score: -1.0 bits; conditional E-value: 0.19 HHHHHTTT--TT-E CS DUF1967 47 edaLrkaGakeGdt 60 e+ L kaGa+ G++ T276598_3 452 EQMLTKAGARRGEQ 465 678*******9975 PP == domain 4 score: -0.8 bits; conditional E-value: 0.16 HHHHHTTT--TT- CS DUF1967 47 edaLrkaGakeGd 59 e+ L kaGa+ G+ T276598_3 476 EQMLTKAGARRGE 488 67899****9997 PP == domain 5 score: 3.1 bits; conditional E-value: 0.01 HHHHHTTT--TT-E CS DUF1967 47 edaLrkaGakeGdt 60 e+ LrkaGa+ G++ T276598_3 524 EQMLRKAGAQRGEQ 537 689********975 PP == domain 6 score: 1.2 bits; conditional E-value: 0.039 HHHHHTTT--TT-E CS DUF1967 47 edaLrkaGakeGdt 60 e+ LrkaGa+ G++ T276598_3 548 EQMLRKAGARRGEE 561 689*******9985 PP == domain 7 score: 2.6 bits; conditional E-value: 0.015 HHHHHTTT--TT- CS DUF1967 47 edaLrkaGakeGd 59 e+ LrkaGa+ G+ T276598_3 560 EEMLRKAGARRGE 572 5667777777665 PP == domain 8 score: 1.9 bits; conditional E-value: 0.025 HHHHHTTT--TT- CS DUF1967 47 edaLrkaGakeGd 59 e+ LrkaGa+ G+ T276598_3 584 EQMLRKAGAQRGE 596 689********97 PP == domain 9 score: 1.3 bits; conditional E-value: 0.038 HHHHHTTT--TT-E CS DUF1967 47 edaLrkaGakeGdt 60 e+ LrkaGa+ G++ T276598_3 608 EQMLRKAGARRGEE 621 689********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 3018.18 // Query: T277860_1 [L=4311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 981 (0.0601619); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.33s 00:00:02.27 Elapsed: 00:00:00.82 # Mc/sec: 15040.29 // Query: T277860_2 [L=4311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 987 (0.0605299); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.30s 00:00:01.84 Elapsed: 00:00:00.73 # Mc/sec: 16894.57 // Query: T277860_3 [L=4310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1071 (0.0656813); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.30s 00:00:01.72 Elapsed: 00:00:00.56 # Mc/sec: 22018.17 // Query: T342949_1 [L=656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 3992.99 // Query: T342949_2 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 4073.57 // Query: T342949_3 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 3903.84 // Query: T002406_1 [L=1899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.58 10.1 3.7 5.7 7.0 0.2 2.5 2 DUF1163 Protein of unknown function (DUF1163) Domain annotation for each model (and alignments): >> DUF1163 Protein of unknown function (DUF1163) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.2 0.00035 5.7 34 55 .. 423 444 .. 421 446 .. 0.88 2 ? 3.5 0.5 0.0044 71 37 55 .. 537 555 .. 532 556 .. 0.87 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00035 DUF1163 34 ttgvmsyaCdevtlrFepgsei 55 + ++++Cd+v + Fe ++e+ T002406_1 423 MRASVNFECDNVSMSFECEHEM 444 56789*************9998 PP == domain 2 score: 3.5 bits; conditional E-value: 0.0044 DUF1163 37 vmsyaCdevtlrFepgsei 55 ++++C+ v + Fe ++e+ T002406_1 537 SVNFECERVSVHFECEHEM 555 789***********99987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 11558.97 // Query: T002406_2 [L=1898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.49 # Mc/sec: 11081.34 // Query: T002406_3 [L=1898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48 # Mc/sec: 11312.20 // Query: T141842_1 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 498 (0.0305409); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.47 # Mc/sec: 6360.78 // Query: T141842_2 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.8 8.7 4.9 16 5.6 0.2 3.4 3 Tat Transactivating regulatory protein (Tat) Domain annotation for each model (and alignments): >> Tat Transactivating regulatory protein (Tat) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.2 0.0065 1.1e+02 36 59 .. 52 76 .. 48 79 .. 0.67 2 ? 5.6 0.2 0.001 16 5 33 .. 413 440 .. 409 441 .. 0.81 3 ? -1.2 0.0 0.13 2.1e+03 9 20 .. 772 783 .. 765 785 .. 0.76 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.0065 HHHHCTT---S-XXX.XXXXXXXXX CS Tat 36 cfikkalGisyerkk.rrqrrrahr 59 cf+kk+l + kk +qr + ++ T141842_2 52 CFMKKSLQVGQRGKKeEHQREKVKK 76 *********8765550555555443 PP == domain 2 score: 5.6 bits; conditional E-value: 0.001 TTS-GGGS-B-S-SS---S--SCCHHTSS CS Tat 5 Prlepwkhpgsqpktactncyckkcsfhc 33 lep ++p c cy kk +hc T141842_2 413 GVLEPSSTVVADPAGGCS-CYSKKSLLHC 440 567888888899999995.********** PP == domain 3 score: -1.2 bits; conditional E-value: 0.13 GGGS-B-S-SS- CS Tat 9 pwkhpgsqpkta 20 wkhp s+ + a T141842_2 772 LWKHPTSEGRNA 783 6*****998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 778 (0.0477125); expected 326.1 (0.02) Passed bias filter: 435 (0.0266773); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 5979.13 // Query: T141842_3 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 624 (0.0382681); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.47 # Mc/sec: 6354.69 // Query: T133991_1 [L=3328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.53 # Mc/sec: 17963.85 // Query: T133991_2 [L=3328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.55 # Mc/sec: 17310.62 // Query: T133991_3 [L=3328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.54 # Mc/sec: 17631.19 // Query: T306119_1 [L=2896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-44 150.5 1.6 1e-43 149.8 1.6 1.3 1 TLV_coat ENV polyprotein (coat polyprotein) 2.8e-09 37.2 0.0 3.9e-09 36.7 0.0 1.2 1 RNase_H RNase H 7.1e-06 26.1 0.0 1.4e-05 25.1 0.0 1.3 1 rve Integrase core domain 3.2e-05 24.0 0.0 5.6e-05 23.2 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 149.8 1.6 2.5e-47 1e-43 387 561 .] 2389 2558 .. 2364 2558 .. 0.88 Alignments for each domain: == domain 1 score: 149.8 bits; conditional E-value: 2.5e-47 XXXXXXX...XXXXXXXXXXXXXXX.XXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS- CS TLV_coat 387 patRvkRepvaltlallLgGLgiaa.gvgtGttgl.vstqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEe 482 ++++ k+ + l +lL+GLg++a + gtG++gl s+++f +L + + +++++s l+ +++sla vlQNR GLDlL++ +GGlC+ L+Ee T306119_1 2389 KKKKKKK---VIPLTPLLVGLGVSAtASGTGIAGLiTSINTFCSLFSDFSTSLTDITQTLSVLQTQVDSLAAAVLQNRQGLDLLTADKGGLCLFLNEE 2483 2333333...57889******99652789******778************************************************************ PP -------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXX.XXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 483 CCFyadksgivrdsiakLqerleqrqrllednqlwfegllg.lspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 CCFy ++sg+v d+i+kL++r ++ + ++ + ++ + l w+++l gp++l+LL++llG c+++ + q+i+ T306119_1 2484 CCFYLNQSGLVYDNIKKLKDRAQKLTNQANSYTGT-TWPFSsLDSWFLPLT----GPFALILLLILLGLCLFRLISQFIQ 2558 **********************9999999998887.776651668******....***********************96 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.7 0.0 9.6e-13 3.9e-09 4 142 .. 1432 1575 .. 1429 1576 .. 0.83 Alignments for each domain: == domain 1 score: 36.7 bits; conditional E-value: 9.6e-13 EEEEEEEEE.ECT.TTEEEEEE.EECTT..EEEE.EEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 4 vvvYtDGsc.lgn.sgeggaga.vlykegarnis.apleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 ++++ DG + + s++g+a + v+++ i+ a+l++ ++a L+A++ aL + ++ +v iyt SkY+++ +++ w +++ tt+ T306119_1 1432 HIWFIDGGS*KTS*SSPGKASYaVVSHS--SIIEtATLPPSAASQQAKLIALTPALTlT--KGLHVSIYTKSKYAFHILHHHAVIWAERGFLTTQGP- 1524 6788888877777889999999555534..4444267779999*************966..99**************88888888888888666666. PP BHTTHHHHHHHH.HCHCSSEEEEEE-SCCSSS.....CHHHHHHHHHHHHHH CS RNase_H 97 pvknkelaellk.elakkkkvqlkhvkgHaGd.....pkgNemaDrlAkeaa 142 ++n++l+++l ++ + k + +kgH++ p gN+ aD+ Ak+aa T306119_1 1525 SIINAHLIKALL*AALLPAKAGVIRCKGHQNTsdpiaP-GNTYADKTAKNAA 1575 6*********988788899999*******888899966.**********997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 0.0 3.4e-09 1.4e-05 4 81 .. 1696 1769 .. 1695 1776 .. 0.86 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 3.4e-09 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytsk 81 p + +q+D+t+++ ++ +yllv++++ +r++la++ +++++ ++ ll ++ rf p + sDn ++++++ T306119_1 1696 PAQDLQIDFTHMPHV--QKLKYLLVWVNTLTRWVLAFPRRSKKARAIILSLLTDIIPRFCL--PTSIQSDNRPAFINQ 1769 67889********44..556**********************7777777777777777777..9***********976 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 1.4e-08 5.6e-05 6 100 .. 828 917 .. 823 918 .. 0.94 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.4e-08 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEE.EEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaie.vllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++++++gk + +l+ tG +++ ++ + P + a +++ G + +++ + ++ ++ ++ f + s+l++p++pv+ll d+L+k+ + L T306119_1 828 RVTLRVEGKSVPFLINTGNTHSTLPSFQGPVS----LARTTVVGTDSQASKRLKIPQL*CHIRQHSFLH--SFLVIPTCPVPLLCGDILTKFSASL 917 6899****************************....9*******999999999999889999*******..********************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.49 # Mc/sec: 16908.09 // Query: T306119_2 [L=2896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.4 1.1 4.6 7.4 0.0 2.9 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.00028 4.6 8 16 .. 747 755 .. 747 756 .. 0.94 2 ? 2.5 0.3 0.0095 1.5e+02 11 17 .. 772 778 .. 772 779 .. 0.93 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00028 SSSSTTTTS CS zf-CCHC 8 epGHiardC 16 +pGH+a++C T306119_2 747 KPGHWAKEC 755 69******* PP == domain 2 score: 2.5 bits; conditional E-value: 0.0095 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T306119_2 772 HWKSDCP 778 ******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.50 # Mc/sec: 16569.93 // Query: T306119_3 [L=2895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-18 67.1 0.0 2e-18 66.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 4.5e-12 45.8 0.1 8e-12 45.0 0.1 1.3 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.012 15.2 0.0 0.026 14.2 0.0 1.5 1 rve_3 Integrase core domain 0.022 14.8 0.0 0.037 14.1 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.6 0.0 4.9e-22 2e-18 1 222 [] 1018 1186 .. 1018 1186 .. 0.87 Alignments for each domain: == domain 1 score: 66.6 bits; conditional E-value: 4.9e-22 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 ++K+g +syR++ d ++n+++ + +++ p++ + s + ++ +++ +Dlk+aF+++pl+ +++l++f++ T306119_3 1018 VQKPG-KSYRLV----QDRHLINQIVLS---------IHPVVPNLYTLLS------------SIPPSTIHYSVIDLKDAFFTIPLHPSSQPLFTFTCT 1089 57999.9****8....466677888888.........9999999988822............24566799**************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT- CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesgl 196 ++ + +++++++ lpqG+ +SP f+ ++++ l +++ +l++Y+DD+l+ s ++ q+ + + ++l + g+ T306119_3 1090 DS------------------DT-HQSQQPTWTLLPQGFRNSPHYFSQALSHDLLSFHPS--ASHLIQYVDDLLC-SPFYQSSQQDIILLLQHLYSKGY 1165 77..................33.459*********************999888888885..69********875.6777888999999999******* PP -BEGGG-EEE.....ESSEEETTEEE CS RVT_1 197 kinpeKtklvlfsgkseevkyLGvtl 222 +i+p+K ++ s +v+yLG++l T306119_3 1166 RISPSKAQIS-----SPSVTYLGIIL 1186 **********.....9*******975 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.0 0.1 2e-15 8e-12 127 210 .. 613 696 .. 610 697 .. 0.97 Alignments for each domain: == domain 1 score: 45.0 bits; conditional E-value: 2e-15 Gag_p30 127 akvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +k k+ +q k+++pa f+ l + rryt dpe e + + + fi+qs sd rkklq+le + ++l++ a kv+n re T306119_3 613 TKTKKTTQNKDKNPAQFMACLPATLRRYTALDPEGIEGRLILNMHFITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNRE 696 588999***************************************************************************998 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 6.4e-06 0.026 2 35 .. 1771 1804 .. 1770 1813 .. 0.90 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 6.4e-06 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellneel 35 gi++++ ap++Pq g+vE ng l+++l + +l T306119_3 1771 GIQWNLYAPYHPQSSGKVEKANGLLKTHLAKLTL 1804 8***************************988766 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 9e-06 0.037 90 118 .. 1770 1798 .. 1769 1799 .. 0.93 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 9e-06 rve 90 lgirvsftrpgrpqdnGkvErfnrtlkde 118 gi++ + +p++pq+ GkvE+ n++lk++ T306119_3 1770 VGIQWNLYAPYHPQSSGKVEKANGLLKTH 1798 5999**********************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 16239.42 // Query: T190312_1 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7660.02 // Query: T190312_2 [L=1311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 7654.18 // Query: T190312_3 [L=1311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 7501.10 // Query: T026664_1 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.50 # Mc/sec: 7592.64 // Query: T026664_2 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7741.76 // Query: T026664_3 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-06 27.1 0.0 8.3e-06 25.9 0.0 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.0 5.1e-10 8.3e-06 1 38 [. 55 92 .. 55 93 .. 0.98 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 5.1e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 H++tHlG++ l++ll r++++ ++ + ++ V++ C +C T026664_3 55 HETTHLGQESLEELLGRYFYVSHLPAFAKAVAQLCITC 92 9************************************* PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 252 (0.0154544); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 7295.12 // Query: T181583_1 [L=1919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0036 17.2 15.0 0.0062 16.4 15.0 1.3 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) ------ inclusion threshold ------ 1.2 7.7 5.6 1.7 7.2 5.6 1.1 1 Tim54 Inner membrane protein import complex subunit Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 15.0 7.6e-07 0.0062 68 119 .. 379 430 .. 372 445 .. 0.63 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 7.6e-07 Trypan_PARP 68 eetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepe 119 e+e e +++ ete e ++e ete + +++p+p+p+++p+p+p+p+p+p+p+ T181583_1 379 AEAEAEAKAKAETETEAKAEGETEAKRKPKPKPKPKPKPKPKPHPHPHPHPH 430 4666777777777777777777776666666666666666666555555554 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 5.6 0.00021 1.7 215 292 .. 378 455 .. 368 458 .. 0.75 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00021 Tim54 215 eeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasaelppeiPellqpvlviplphllGflntper 292 +e+e+e+++++e+e+e+++e e+e++ k+k k++pkp +p+ +++ + p+ +++ +++l + p l Gf ++p r T181583_1 378 AAEAEAEAKAKAETETEAKAEGETEAKRKPKPKPKPKPKPKPKPHPHPHPHPHRSNEANSLLHLTAPSLKGFNEFPAR 455 2233333445555566666677777777888888888899999999999999999999*****************988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 9803.45 // Query: T181583_2 [L=1919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 21.5 19.9 0.00023 21.5 19.9 1.7 2 TonB_N TonB N-terminal region ------ inclusion threshold ------ 0.22 11.4 13.1 0.47 10.4 13.1 1.4 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> TonB_N TonB N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 19.9 2.9e-08 0.00023 35 83 .. 362 404 .. 354 434 .. 0.50 2 ? -3.9 0.2 2 1.6e+04 31 47 .. 1667 1683 .. 1660 1688 .. 0.57 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.9e-08 X.XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS TonB_N 35 P.apePevepePePePevvPePpkeapvaiekPkPepkpKPKPKpekKee 83 ++eP p+P+P+P++ P+P +kPkP+pkpKPKPK + K + T181583_2 362 MgQDEPLHLPQPQPQPQPKPKPK-------PKPKPKPKPKPKPKAKPKPN 404 23556666566666666555554.......22333333333333333311 PP == domain 2 score: -3.9 bits; conditional E-value: 2 XXXXXXXXXXX..XXXX CS TonB_N 31 aepePapePevepePeP 47 +p+ a P+v p+P P T181583_2 1667 TAPTSAAGPKVTPTPLP 1683 34444555666554444 PP >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 13.1 5.7e-05 0.47 81 119 .. 366 404 .. 355 416 .. 0.49 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 5.7e-05 Trypan_PARP 81 epeeegeeetepeeeeepepepetepepepepepepepe 119 ep + ++++++p+++++p+p+p+++p+p+p+p+ +p+p+ T181583_2 366 EPLHLPQPQPQPQPKPKPKPKPKPKPKPKPKPKAKPKPN 404 333333444444444434444444444444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 10166.54 // Query: T181583_3 [L=1919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.26 10.1 18.5 0.41 9.5 18.5 1.1 1 Corona_nucleoca Coronavirus nucleocapsid protein 4.9 7.1 25.7 9.5 6.1 25.7 1.4 1 Transformer Fruit fly transformer protein Domain annotation for each model (and alignments): >> Corona_nucleoca Coronavirus nucleocapsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 18.5 5e-05 0.41 166 202 .. 372 408 .. 364 416 .. 0.80 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 5e-05 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Corona_nucleoca 166 grsraasrsgsrsrsrsrnrarsssrgrspastaknd 202 rsr+ srs srs+s+srnr+rs+sr r+ ++t + T181583_3 372 SRSRSRSRSRSRSQSQSRNRNRSQSRRRNRSQTEAKA 408 58888999999999999***********999876543 PP >> Transformer Fruit fly transformer protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 25.7 0.0012 9.5 41 95 .. 360 411 .. 338 429 .. 0.45 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0012 Transformer 41 krktqstrpttshrerrtrsrsrsqsaeresrqrrrr..srsrsrrrsdsrskssss 95 + ++ r t r+rsrsrs+s +r++ q r+r s+sr r+rs++ k+++ T181583_3 360 RAWAKMSRST-----CRSRSRSRSRSRSRSQSQSRNRnrSQSRRRNRSQTEAKAETE 411 2222223322.....244444444444444444444400444444444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 846 (0.0518827); expected 326.1 (0.02) Passed bias filter: 371 (0.0227524); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.57 # Mc/sec: 9465.40 // Query: T221904_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 6089.48 // Query: T221904_2 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5845.07 // Query: T221904_3 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 5845.07 // Query: T050999_1 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 5017.46 // Query: T050999_2 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5324.65 // Query: T050999_3 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 4831.62 // Query: T236801_1 [L=6384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-09 36.3 0.0 8.5e-09 35.5 0.0 1.3 1 rve Integrase core domain 0.0025 17.2 0.0 0.004 16.6 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 1e-12 8.5e-09 59 117 .. 2719 2776 .. 2711 2778 .. 0.92 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 1e-12 rve 59 varfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 +++++g p+ + sDn ++++ +++ ++ lgi+++++ ++rpq+ GkvE++n+t+k T236801_1 2719 ADSRFGL-PLQIDSDNRLAFVADLVQKTAKVLGITWKLHTTYRPQSSGKVEQMNQTIKS 2776 5677787.*************************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 4.9e-07 0.004 1 100 [. 2558 2632 .. 2558 2647 .. 0.81 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 4.9e-07 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 +pK+g+ + R+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+ F+s++l+ +++kl+af+ T236801_1 2558 VPKPGAMDCRLaQ-----DLRLVNQATVT---------LHPVVPNLYTLLGL------------LPAEDSWFTCLDLKDIFFSIRLAPESQKLFAFQW 2629 5788888888855.....99999999999.........88888888888444............55788***************************98 PP T.. CS RVT_1 98 ptk 100 +++ T236801_1 2630 EDP 2632 866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.62 # Mc/sec: 29457.32 // Query: T236801_2 [L=6384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.2 0.0 0.0028 17.2 0.0 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 1.7e-07 0.0028 32 62 .. 1920 1950 .. 1918 1954 .. 0.90 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.7e-07 HHHHHHHHTTGGGGSSS--TT----HHHHHH CS Gag_MA 32 kklitlCsseWptlnvgWPreGtfdltviak 62 +kl+tlC+ +Wp+l+vgW eG d +++ k T236801_2 1920 GKLRTLCEIDWPALEVGWASEGNLDGSLVFK 1950 699********************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.59u 0.33s 00:00:01.92 Elapsed: 00:00:00.73 # Mc/sec: 25018.55 // Query: T236801_3 [L=6384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-27 94.2 1.5 1.5e-25 89.8 0.1 2.2 2 Gag_p30 Gag P30 core shell protein 7.5e-13 47.9 0.5 1.2e-12 47.3 0.5 1.2 1 Transposase_22 L1 transposable element 6e-07 29.1 0.0 9.6e-07 28.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.1 0.01 56 16 40 .. 2042 2066 .. 2037 2068 .. 0.92 2 ! 89.8 0.1 2.8e-29 1.5e-25 83 185 .. 2110 2212 .. 2096 2218 .. 0.92 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.01 Gag_p30 16 nnpsfsedpqkltaliesillthqp 40 + ps++++pq+l l+++++ th+p T236801_3 2042 DTPSYTKKPQALMDLLQTVIQTHKP 2066 68**********************9 PP == domain 2 score: 89.8 bits; conditional E-value: 2.8e-29 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdi 180 + +p t +wd + +g ++l+ yr++ll gl+ a++ tn+ kv e +qgk+espa f +rl+eayr+ytp+dp + e++ + ++++ qsa di T236801_3 2110 MRIQLPGTDAEWDPNERQGMQRLNRYRKALLEGLKKGAQKVTNVNKVSEAIQGKDESPAQFYKRLREAYRMYTPFDPSSLENQHMINMALVSQSAEDI 2207 456789999***************************************************************************************** PP Gag_p30 181 rkklq 185 ++ ++ T236801_3 2208 KENFK 2212 *9865 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.5 2.2e-16 1.2e-12 201 310 .. 3562 3671 .. 3560 3673 .. 0.86 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 2.2e-16 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236801_3 3562 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 3650 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236801_3 3651 ETL*A-KREWHDIFKELKEKKL 3671 **775.69************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.0 1.8e-10 9.6e-07 122 207 .. 2634 2719 .. 2622 2734 .. 0.87 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.8e-10 ..TEEEEESB--ST-TTHHHHHHHHHH.HHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS RVT_1 122 esegryekkglpqGsvlSPllfnlfmn.ellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvl 207 + ++++ ++ lpqG+++SP++f ++ +l + + g+ ll Y+DD+l+ + + + + +++ ++l+++g+k+ ++K +++ T236801_3 2634 RCHHSVPWTQLPQGFKNSPTIFGGVLA*DLQKFPTRD-LGCLLLEYIDDLLLGHPTAVGCAKGTDTLLQHLEDCGYKVPKKKAQICR 2719 5678999******************988887766665.69*********************************************93 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.99u 0.40s 00:00:02.39 Elapsed: 00:00:00.87 # Mc/sec: 20992.57 // Query: T166773_1 [L=1650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.61 # Mc/sec: 7738.31 // Query: T166773_2 [L=1649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 7371.11 // Query: T166773_3 [L=1649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 7371.11 // Query: T358356_1 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-40 137.4 2.0 7.1e-40 137.1 2.0 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.1 2.0 4.4e-44 7.1e-40 2 139 .. 321 456 .. 320 465 .. 0.93 Alignments for each domain: == domain 1 score: 137.1 bits; conditional E-value: 4.4e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssks 93 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358356_1 321 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP---- 412 7****************************97765324444559*******************************.******************.... PP RBP_receptor 94 ekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358356_1 413 ---QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 456 ...9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 3793.07 // Query: T358356_2 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 3283.55 // Query: T358356_3 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 3543.74 // Query: T265029_1 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 76 (0.00466086); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.59 # Mc/sec: 930.98 // Query: T265029_2 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-05 22.3 0.0 0.00013 21.8 0.0 1.1 1 cNMP_binding Cyclic nucleotide-binding domain Domain annotation for each model (and alignments): >> cNMP_binding Cyclic nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 8e-09 0.00013 3 55 .. 28 85 .. 27 91 .. 0.89 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 8e-09 EE-TT-EEE-TTSB-SEEEEEEES-EEEE.....EETTS-EEEEEEE-TTEEESHHHH CS cNMP_binding 3 sfkagevifrqGdpadslyivlsGevrvy.....lsedgkevilavlgpGdlfGelal 55 +++a+ ++rqG + ++y +l G ++v+ ++++ ++ il ++++Gd++G +l T265029_2 28 RYEAESLVLRQGHLPLECYWILAGHLKVIssntsTNKNSNSDILSEFEEGDFIGVNSL 85 699*********99999***********98887777777888************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 980.86 // Query: T265029_3 [L=191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.46 # Mc/sec: 1187.87 // Query: T173635_1 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:00.84 # Mc/sec: 7976.27 // Query: T173635_2 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.3 1.5 0.09 12.4 1.5 1.4 1 Gly-zipper_YMGG YMGG-like Gly-zipper Domain annotation for each model (and alignments): >> Gly-zipper_YMGG YMGG-like Gly-zipper # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 1.5 5.5e-06 0.09 5 27 .. 930 952 .. 929 965 .. 0.85 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 5.5e-06 XXXXXXXXXXXXXXXXXXXXXXX CS Gly-zipper_YMGG 5 rGAaiGAaaGAvvGaliGsgggk 27 r A+ GAaaGAv+Gal +gg+ T173635_2 930 RAAGRGAAAGAVLGALLHPHGGH 952 56999999999999999876665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.72 # Mc/sec: 9305.64 // Query: T173635_3 [L=2342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 10307.79 // Query: T294483_1 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-17 62.8 0.3 5.7e-17 62.0 0.3 1.3 1 DUF1669 Protein of unknown function (DUF1669) Domain annotation for each model (and alignments): >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.0 0.3 3.5e-21 5.7e-17 140 198 .. 51 109 .. 46 110 .. 0.94 Alignments for each domain: == domain 1 score: 62.0 bits; conditional E-value: 3.5e-21 DUF1669 140 viavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlr 198 v avvmd+ft+vdifkdll+a++krk ++yi++de+++k+ l+mce+++++ +hlk + T294483_1 51 VPAVVMDMFTHVDIFKDLLDAGFKRKAALYIIVDESKVKYVLHMCERTRMHLGHLKAIL 109 779****************************************************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.72 # Mc/sec: 1350.95 // Query: T294483_2 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.67 # Mc/sec: 1447.49 // Query: T294483_3 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.66 # Mc/sec: 1469.43 // Query: T293972_1 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 8481.76 // Query: T293972_2 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 8727.60 // Query: T293972_3 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 9712.98 // Query: T227391_1 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 2136.68 // Query: T227391_2 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 2274.36 // Query: T227391_3 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 516 (0.0316448); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 2784.93 // Query: T181320_1 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.77 # Mc/sec: 3328.97 // Query: T181320_2 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 785 (0.0481418); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.79 # Mc/sec: 3241.07 // Query: T181320_3 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.61 # Mc/sec: 4197.45 // Query: T381581_1 [L=1641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 7956.99 // Query: T381581_2 [L=1641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.66 # Mc/sec: 7113.06 // Query: T381581_3 [L=1641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 7451.78 // Query: T297988_1 [L=3905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.34s 00:00:01.71 Elapsed: 00:00:00.65 # Mc/sec: 17186.99 // Query: T297988_2 [L=3905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.29s 00:00:01.64 Elapsed: 00:00:00.56 # Mc/sec: 19599.19 // Query: T297988_3 [L=3905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.72 # Mc/sec: 15516.03 // Query: T138735_1 [L=1381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 5896.73 // Query: T138735_2 [L=1381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 6696.28 // Query: T138735_3 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 7592.20 // Query: T240633_1 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.57 # Mc/sec: 2727.65 // Query: T240633_2 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.55 # Mc/sec: 2876.43 // Query: T240633_3 [L=553] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (553 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.62 # Mc/sec: 2551.68 // Query: T143627_1 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 13.1 0.7 0.045 12.6 0.7 1.1 1 DUF2722 Protein of unknown function (DUF2722) Domain annotation for each model (and alignments): >> DUF2722 Protein of unknown function (DUF2722) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.7 2.7e-06 0.045 20 46 .. 516 539 .. 507 600 .. 0.68 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 2.7e-06 DUF2722 20 skqqqkkesskqgsqqeqksqqqqqsq 46 ++qq+++e+++q+++ +++qqq++q T143627_1 516 QEQQEQQEQQEQQQE---QQEQQQEQQ 539 222222222222222...222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1168 (0.0716301); expected 326.1 (0.02) Passed bias filter: 736 (0.0451368); expected 326.1 (0.02) Passed Vit filter: 108 (0.00662333); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.40u 0.40s 00:00:01.79 Elapsed: 00:00:00.72 # Mc/sec: 6162.70 // Query: T143627_2 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.52 9.2 4.2 0.75 8.6 4.2 1.1 1 Corona_nucleoca Coronavirus nucleocapsid protein 0.93 8.9 11.5 1.3 8.4 11.5 1.1 1 RSRP Arginine/Serine-Rich protein 1 Domain annotation for each model (and alignments): >> Corona_nucleoca Coronavirus nucleocapsid protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 4.2 9.1e-05 0.75 152 191 .. 502 539 .. 482 560 .. 0.64 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 9.1e-05 TT---STTEEETT-.SXXXXXXXXXXXXXXXX.XXXXXXXXX CS Corona_nucleoca 152 dGtvlPqgfyvegs.grsraasrsgsrsrsrs.rnrarsssr 191 G +P y+eg grs +srs srs srs r ++rss r T143627_2 502 TGVRVPG--YLEGRpGRSSRSSRS-SRSSSRSsRSSSRSS-R 539 5666777..999999999999997.566666623334433.3 PP >> RSRP Arginine/Serine-Rich protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 11.5 0.00016 1.3 23 51 .. 513 539 .. 463 547 .. 0.64 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00016 RSRP 23 ssGsssrlssrsrsrsssrssrshsrsss 51 + G+ssr+s+ sr sssrssrs srss T143627_2 513 RPGRSSRSSRSSR--SSSRSSRSSSRSSR 539 4455555555444..45566666665553 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 7650.25 // Query: T143627_3 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 6722.95 // Query: T265155_1 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 3470.08 // Query: T265155_2 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 3022.33 // Query: T265155_3 [L=654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3741.97 // Query: T212085_1 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.73 # Mc/sec: 5349.36 // Query: T212085_2 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 7656.93 // Query: T212085_3 [L=1365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.57 # Mc/sec: 6732.82 // Query: T230232_1 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.55 # Mc/sec: 7557.79 // Query: T230232_2 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.24s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 6112.92 // Query: T230232_3 [L=1453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 6204.16 // Query: T323259_1 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0069 16.4 34.3 0.025 14.7 15.5 5.1 4 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 3.8 7.9e-05 1.3 25 50 .] 326 351 .. 323 351 .. 0.87 2 ! 14.7 15.5 1.5e-06 0.025 2 46 .. 377 424 .. 376 428 .. 0.94 3 ? -2.2 0.1 0.28 4.6e+03 11 30 .. 429 448 .. 424 453 .. 0.77 4 ? -0.3 0.2 0.073 1.2e+03 22 48 .. 550 574 .. 546 581 .. 0.56 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 7.9e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323259_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 2 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323259_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 3 score: -2.2 bits; conditional E-value: 0.28 DUF4705 11 LqapaslqasglsrpsaqLp 30 L+a+ +l++ gl r ++ L+ T323259_1 429 LRAALLLPHGGLLRQGLTLT 448 66788899999999888876 PP == domain 4 score: -0.3 bits; conditional E-value: 0.073 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323259_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 6129.75 // Query: T323259_2 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 6412.66 // Query: T323259_3 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-05 23.8 22.5 0.00032 20.7 6.3 7.8 9 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 0.4 0.99 1.6e+04 35 48 .. 201 214 .. 198 214 .. 0.81 2 ? -2.9 0.2 0.48 7.7e+03 21 47 .. 248 274 .. 247 276 .. 0.81 3 ? 0.9 1.2 0.031 5.1e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 20.7 6.3 2e-08 0.00032 26 50 .] 357 381 .. 336 381 .. 0.82 5 ! 18.6 8.2 8.7e-08 0.0014 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? -0.3 2.6 0.069 1.1e+03 2 14 .. 431 446 .. 430 461 .. 0.73 7 ? -2.7 0.1 0.39 6.4e+03 24 38 .. 584 598 .. 578 611 .. 0.63 8 ? 0.4 0.2 0.043 6.9e+02 6 14 .. 832 850 .. 830 879 .. 0.64 9 ? -2.9 0.1 0.47 7.7e+03 37 47 .. 1066 1076 .. 1054 1076 .. 0.73 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 0.99 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323259_3 201 GPGRPTCSSSRPTS 214 78888888899987 PP == domain 2 score: -2.9 bits; conditional E-value: 0.48 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 + r++a ++ A++ p l ++L + s T323259_3 248 CHRRAGAEPGEATVRPDLGLGSLASGS 274 77799999999**99999888887764 PP == domain 3 score: 0.9 bits; conditional E-value: 0.031 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323259_3 324 PGLCLPHGGLCRPSC 338 345556667777755 PP == domain 4 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323259_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 18.6 bits; conditional E-value: 8.7e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323259_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: -0.3 bits; conditional E-value: 0.069 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323259_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -2.7 bits; conditional E-value: 0.39 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323259_3 584 RGSRRPLSAWQGPVR 598 666666666666665 PP == domain 8 score: 0.4 bits; conditional E-value: 0.043 DUF4705 6 asrrpLqa..........p 14 a+rr+Lq+ p T323259_3 832 AGRRRLQDdlglqrspggP 850 7899999844443333321 PP == domain 9 score: -2.9 bits; conditional E-value: 0.47 DUF4705 37 klppagLsrPs 47 ++p++gL rP+ T323259_3 1066 ERPELGLGRPT 1076 56888999995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 6512.86 // Query: T320626_1 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 675 (0.0413958); expected 326.1 (0.02) Passed bias filter: 271 (0.0166196); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 3385.32 // Query: T320626_2 [L=781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 4137.61 // Query: T320626_3 [L=780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.65 # Mc/sec: 3433.00 // Query: T137385_1 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 9265.00 // Query: T137385_2 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 9679.85 // Query: T137385_3 [L=2266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.25s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 11176.97 // Query: T259859_1 [L=2370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.49 # Mc/sec: 13837.08 // Query: T259859_2 [L=2369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.50 # Mc/sec: 13554.61 // Query: T259859_3 [L=2369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.64 # Mc/sec: 10589.54 // Query: T258275_1 [L=1235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1234 (0.0756777); expected 326.1 (0.02) Passed bias filter: 282 (0.0172942); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 5047.32 // Query: T258275_2 [L=1234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.55 # Mc/sec: 6418.66 // Query: T258275_3 [L=1234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 516 (0.0316448); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.71 # Mc/sec: 4972.20 // Query: T190064_1 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0027 17.6 3.4 0.0095 15.9 3.4 2.0 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 1.3 8.7 15.1 1.5 8.4 1.3 3.5 3 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 3.4 1.2e-06 0.0095 2 16 .. 757 771 .. 756 771 .. 0.95 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.2e-06 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +Cy+C++ H+a++C T190064_1 757 ACYKCQKSDHQAKEC 771 7************** PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 1.3 0.00019 1.5 2 18 .. 755 771 .. 754 772 .. 0.95 2 ? 5.8 1.9 0.0013 10 1 19 [. 777 794 .. 777 797 .. 0.89 3 ? 1.6 0.2 0.026 2.1e+02 4 10 .. 1058 1064 .. 1057 1069 .. 0.89 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00019 --B-TTT-SSBS-TTT- CS zf-CCHC_5 2 pglCpRCkkgkHwardC 18 pg C +C k H a++C T190064_1 755 PGACYKCQKSDHQAKEC 771 899************** PP == domain 2 score: 5.8 bits; conditional E-value: 0.0013 ---B-TTT-SSBS-TTT-- CS zf-CCHC_5 1 ppglCpRCkkgkHwardCh 19 p+ lCp C g Hw+ dC T190064_1 777 PSKLCPICA-GPHWKLDCS 794 688*****6.********6 PP == domain 3 score: 1.6 bits; conditional E-value: 0.026 B-TTT-S CS zf-CCHC_5 4 lCpRCkk 10 lC+RC++ T190064_1 1058 LCLRCGQ 1064 8****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 7165.28 // Query: T190064_2 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 7893.95 // Query: T190064_3 [L=1627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 9903.34 // Query: T323209_1 [L=2343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-115 376.0 531.8 4e-17 62.0 8.0 47.2 45 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.1 0.18 3e+03 38 47 .. 39 48 .. 38 52 .. 0.81 2 ? -0.5 0.1 0.085 1.4e+03 7 34 .. 51 77 .. 46 79 .. 0.86 3 ! 34.2 7.0 1.2e-12 1.9e-08 3 49 .. 79 124 .. 77 125 .. 0.96 4 ! 30.8 7.0 1.4e-11 2.3e-07 1 38 [. 130 166 .. 130 176 .. 0.93 5 ! 23.9 4.6 2e-09 3.3e-05 5 38 .. 177 209 .. 171 218 .. 0.92 6 ! 22.5 6.2 5.4e-09 8.7e-05 5 38 .. 221 253 .. 220 255 .. 0.95 7 ! 10.5 3.2 3e-05 0.49 1 34 [. 249 277 .. 249 288 .. 0.77 8 ! 22.4 16.3 5.6e-09 9.2e-05 1 49 [. 291 338 .. 291 339 .. 0.99 9 ! 8.9 1.8 9.9e-05 1.6 8 40 .. 352 383 .. 349 386 .. 0.84 10 ! 10.9 12.6 2.3e-05 0.38 2 34 .. 377 408 .. 376 436 .. 0.59 11 ! 18.7 0.3 8.4e-08 0.0014 23 48 .. 492 517 .. 461 517 .. 0.80 12 ! 23.9 0.9 2e-09 3.3e-05 29 50 .] 519 540 .. 519 540 .. 0.99 13 ! 12.0 0.4 1e-05 0.16 31 47 .. 542 558 .. 542 561 .. 0.94 14 ! 4.5 1.4 0.0023 38 14 39 .. 557 582 .. 557 586 .. 0.89 15 ! 8.4 2.1 0.00014 2.3 4 30 .. 592 617 .. 590 620 .. 0.89 16 ! 6.4 0.5 0.00057 9.2 3 18 .. 623 637 .. 622 641 .. 0.87 17 ! 22.2 14.5 6.7e-09 0.00011 1 50 [] 642 690 .. 642 690 .. 0.91 18 ! 8.3 2.2 0.00014 2.4 21 38 .. 682 699 .. 674 707 .. 0.82 19 ! 24.9 7.6 9.8e-10 1.6e-05 2 50 .] 696 753 .. 696 753 .. 0.81 20 ! 27.3 7.0 1.7e-10 2.7e-06 20 50 .] 744 774 .. 743 774 .. 0.96 21 ! 15.9 9.3 6.3e-07 0.01 16 49 .. 761 794 .. 759 796 .. 0.91 22 ! 2.7 12.0 0.0081 1.3e+02 17 50 .] 783 828 .. 781 828 .. 0.81 23 ? 1.6 5.2 0.018 2.9e+02 14 38 .. 813 837 .. 812 853 .. 0.79 24 ! 7.3 13.7 0.0003 4.8 2 49 .. 857 915 .. 856 915 .. 0.68 25 ? 0.8 22.5 0.032 5.3e+02 10 42 .. 919 983 .. 889 1002 .. 0.71 26 ! 33.2 4.4 2.5e-12 4.1e-08 19 50 .] 1016 1047 .. 1005 1047 .. 0.95 27 ! 17.8 17.1 1.6e-07 0.0026 1 50 [] 1052 1113 .. 1052 1113 .. 0.96 28 ? -3.4 1.1 0.68 1.1e+04 11 11 .. 1189 1189 .. 1177 1222 .. 0.47 29 ! 16.2 11.9 5e-07 0.0081 18 50 .] 1347 1379 .. 1332 1379 .. 0.88 30 ! 21.0 2.8 1.6e-08 0.00025 17 50 .] 1379 1412 .. 1379 1412 .. 0.96 31 ! 57.0 9.2 9.1e-20 1.5e-15 1 50 [] 1417 1464 .. 1417 1464 .. 0.99 32 ? -2.5 3.1 0.35 5.7e+03 5 31 .. 1465 1498 .. 1465 1509 .. 0.57 33 ? -1.5 15.1 0.17 2.8e+03 5 50 .] 1498 1555 .. 1494 1555 .. 0.78 34 ? -9.9 11.9 1 1.6e+04 13 23 .. 1624 1639 .. 1606 1722 .. 0.71 35 ? -2.8 0.8 0.42 6.9e+03 6 23 .. 1751 1781 .. 1750 1805 .. 0.66 36 ? -1.3 0.1 0.14 2.3e+03 6 13 .. 1800 1807 .. 1796 1822 .. 0.74 37 ? -3.4 0.1 0.69 1.1e+04 4 11 .. 1852 1859 .. 1852 1876 .. 0.83 38 ! 13.2 9.7 4.5e-06 0.073 17 50 .] 1984 2017 .. 1962 2017 .. 0.85 39 ! 27.4 3.3 1.6e-10 2.7e-06 17 50 .] 2017 2050 .. 2016 2050 .. 0.96 40 ! 62.0 8.0 2.5e-21 4e-17 1 50 [] 2055 2104 .. 2055 2104 .. 0.99 41 ! 12.0 0.9 1.1e-05 0.17 25 44 .. 2100 2119 .. 2099 2120 .. 0.91 42 ! 10.4 4.7 3.3e-05 0.54 24 49 .. 2131 2155 .. 2125 2155 .. 0.80 43 ! 3.8 1.5 0.0038 62 26 39 .. 2154 2169 .. 2154 2178 .. 0.72 44 ? 2.2 0.7 0.012 1.9e+02 29 50 .] 2180 2202 .. 2180 2202 .. 0.86 45 ! 20.8 13.9 1.8e-08 0.0003 1 39 [. 2207 2267 .. 2207 2274 .. 0.95 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.18 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323209_1 39 LPPGSLSRPR 48 6889999985 PP == domain 2 score: -0.5 bits; conditional E-value: 0.085 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323209_1 51 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 77 567788.999**********99999877 PP == domain 3 score: 34.2 bits; conditional E-value: 1.2e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323209_1 79 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 124 689*******.************************************ PP == domain 4 score: 30.8 bits; conditional E-value: 1.4e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323209_1 130 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 166 9***********.***********************86 PP == domain 5 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323209_1 177 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 209 899*****.***********************98 PP == domain 6 score: 22.5 bits; conditional E-value: 5.4e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323209_1 221 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 253 9*******.***********************86 PP == domain 7 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323209_1 249 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 277 9***********5444.....4446888888887 PP == domain 8 score: 22.4 bits; conditional E-value: 5.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323209_1 291 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 338 9***********.************************************ PP == domain 9 score: 8.9 bits; conditional E-value: 9.9e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323209_1 352 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 383 67799..889999****************99544 PP == domain 10 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323209_1 377 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 408 9**********.666666666666666666553 PP == domain 11 score: 18.7 bits; conditional E-value: 8.4e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323209_1 492 LQTKLSLPVASTGQNCPQVSLSRANS 517 488999*****************976 PP == domain 12 score: 23.9 bits; conditional E-value: 2e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323209_1 519 LPVASAGQNRPQVSLFTPSSCL 540 8********************9 PP == domain 13 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323209_1 542 VASAGAKLPQVGLSRPS 558 8***************7 PP == domain 14 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323209_1 557 PSLLLPEGMYRPSLCLTADSPCPALP 582 678999************99999987 PP == domain 15 score: 8.4 bits; conditional E-value: 0.00014 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323209_1 592 APAFRQLVR-AQLLPHGGLFSPNSCLL 617 9*****555.***************95 PP == domain 16 score: 6.4 bits; conditional E-value: 0.00057 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323209_1 623 SAPASHWPLE-AQLMP 637 6********9.99887 PP == domain 17 score: 22.2 bits; conditional E-value: 6.7e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323209_1 642 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 690 8***********.***************99876666667899*******9 PP == domain 18 score: 8.3 bits; conditional E-value: 0.00014 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323209_1 682 SLCGPSSCLPVASVGQAR 699 5667***********986 PP == domain 19 score: 24.9 bits; conditional E-value: 9.8e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323209_1 696 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 753 678888888888888888852.44311567899*************************9 PP == domain 20 score: 27.3 bits; conditional E-value: 1.7e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323209_1 744 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 774 79***************************87 PP == domain 21 score: 15.9 bits; conditional E-value: 6.3e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323209_1 761 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 794 66899**************************975 PP == domain 22 score: 2.7 bits; conditional E-value: 0.0081 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323209_1 783 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 828 57899***9637*********9989888888888888888888765 PP == domain 23 score: 1.6 bits; conditional E-value: 0.018 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323209_1 813 PGLLPPEGLHRPSLSLTADSPRPAS 837 6689999999999999998877655 PP == domain 24 score: 7.3 bits; conditional E-value: 0.0003 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gl p+ + +s++ + pp++Ls Pss+ T323209_1 857 GPAPACQWPLQAhgahssqrpfqAQFFPSGGLCGPR---TSSSRPLQThlqPPGVLSGPSSS 915 9*************9998765554444444444443...23444444488888999999886 PP == domain 25 score: 0.8 bits; conditional E-value: 0.032 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323209_1 919 RLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 983 45556666666666666666666666667777775577779********************5543 PP == domain 26 score: 33.2 bits; conditional E-value: 2.5e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323209_1 1016 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1047 589****************************9 PP == domain 27 score: 17.8 bits; conditional E-value: 1.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323209_1 1052 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1113 8***********.************************99*99999999999***********8 PP == domain 28 score: -3.4 bits; conditional E-value: 0.68 DUF4705 11 L 11 L T323209_1 1189 L 1189 2 PP == domain 29 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP +CL T323209_1 1347 PQVGLSRPTCSLPASSPGPALPPGCVSRPDCCL 1379 899*****************************9 PP == domain 30 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323209_1 1379 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1412 6889****************************87 PP == domain 31 score: 57.0 bits; conditional E-value: 9.1e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323209_1 1417 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1464 9*********************************************..97 PP == domain 32 score: -2.5 bits; conditional E-value: 0.35 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpv 31 Pas++ L a p+ l +s s+++p T323209_1 1465 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPT 1498 6777777766665555555555555555.....333444 PP == domain 33 score: -1.5 bits; conditional E-value: 0.17 DUF4705 5 PasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa l+ +++ p + +++As+G+++ pa++ +Pss+L T323209_1 1498 TASRWPVQAqlwl*nslcrlRSCLPEASPG-PALAPTAASRGQVPacLPAARVQPSSSL 1555 599999998888888888876677777666.6678899999988777679999999987 PP == domain 34 score: -9.9 bits; conditional E-value: 1 DUF4705 13 a.....paslqasgls 23 p++l+ +gls T323209_1 1624 PclapaPPTLREVGLS 1639 0444444444444444 PP == domain 35 score: -2.8 bits; conditional E-value: 0.42 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323209_1 1751 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 1781 7888887777777777777777777777666 PP == domain 36 score: -1.3 bits; conditional E-value: 0.14 DUF4705 6 asrrpLqa 13 as+rpL++ T323209_1 1800 ASHRPLHT 1807 999***95 PP == domain 37 score: -3.4 bits; conditional E-value: 0.69 DUF4705 4 APasrrpL 11 A as+rpL T323209_1 1852 ALASHRPL 1859 889****9 PP == domain 38 score: 13.2 bits; conditional E-value: 4.5e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323209_1 1984 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 2017 45568**************************987 PP == domain 39 score: 27.4 bits; conditional E-value: 1.6e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323209_1 2017 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 2050 8999****************************87 PP == domain 40 score: 62.0 bits; conditional E-value: 2.5e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323209_1 2055 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 2104 9***********************************************98 PP == domain 41 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323209_1 2100 SSSSLPAASAGLSCPQVGLE 2119 6899**************96 PP == domain 42 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323209_1 2131 GPSSV-LLASPGAKLPRVSLSRPSSS 2155 45555.579***************97 PP == domain 43 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323209_1 2154 SSCLPVASFGPAQlmA 2169 79*********86443 PP == domain 44 score: 2.2 bits; conditional E-value: 0.012 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323209_1 2180 LLVASSGPELdLQSAFAGPASCL 2202 789*******8677888999998 PP == domain 45 score: 20.8 bits; conditional E-value: 1.8e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323209_1 2207 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 2267 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.53 # Mc/sec: 12647.03 // Query: T323209_2 [L=2343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-58 194.0 524.6 1.5e-15 57.0 9.2 45.3 42 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 2.9 2.3e-07 0.0038 29 48 .. 40 59 .. 31 59 .. 0.95 2 ! 11.4 3.8 1.6e-05 0.26 2 43 .. 67 108 .. 67 113 .. 0.90 3 ! 25.6 6.2 6e-10 9.8e-06 1 36 [. 119 153 .. 119 155 .. 0.94 4 ! 7.5 15.3 0.00026 4.3 3 50 .] 153 221 .. 151 237 .. 0.85 5 ! 11.9 2.7 1.1e-05 0.18 3 26 .. 240 262 .. 239 269 .. 0.91 6 ! 14.6 4.9 1.6e-06 0.026 10 39 .. 289 317 .. 289 319 .. 0.96 7 ! 19.7 0.2 4e-08 0.00066 22 47 .. 333 358 .. 325 360 .. 0.91 8 ! 20.5 6.1 2.3e-08 0.00037 8 37 .. 372 400 .. 365 402 .. 0.90 9 ! 3.3 0.7 0.0052 85 24 39 .. 399 414 .. 398 416 .. 0.85 10 ! 15.8 4.8 6.9e-07 0.011 9 48 .. 458 496 .. 451 497 .. 0.94 11 ? 1.2 0.9 0.024 3.9e+02 7 27 .. 498 518 .. 497 525 .. 0.65 12 ! 6.3 4.1 0.00063 10 3 29 .. 536 562 .. 513 565 .. 0.90 13 ! 14.4 1.4 1.8e-06 0.03 1 30 [. 566 594 .. 566 597 .. 0.96 14 ? 0.3 4.8 0.047 7.6e+02 18 50 .] 601 637 .. 598 637 .. 0.80 15 ! 9.5 3.2 6e-05 0.98 8 43 .. 638 672 .. 637 677 .. 0.89 16 ! 20.2 15.6 2.8e-08 0.00046 2 49 .. 685 731 .. 684 731 .. 0.94 17 ? -2.2 0.0 0.28 4.5e+03 7 15 .. 732 739 .. 732 744 .. 0.81 18 ! 9.9 0.6 4.6e-05 0.75 1 15 [. 747 760 .. 747 767 .. 0.82 19 ! 20.7 14.2 1.9e-08 0.00032 1 39 [. 768 818 .. 768 821 .. 0.93 20 ! 24.3 24.9 1.5e-09 2.5e-05 1 50 [] 822 905 .. 822 905 .. 0.95 21 ! 8.4 7.5 0.00013 2.2 29 50 .] 905 926 .. 903 926 .. 0.96 22 ! 20.9 3.0 1.7e-08 0.00028 17 50 .] 926 959 .. 926 959 .. 0.96 23 ! 57.0 9.2 9.1e-20 1.5e-15 1 50 [] 964 1011 .. 964 1011 .. 0.99 24 ? -2.5 7.6 0.34 5.6e+03 5 50 .] 1012 1068 .. 1012 1068 .. 0.71 25 ? 0.0 15.3 0.056 9.2e+02 5 50 .] 1045 1102 .. 1041 1102 .. 0.78 26 ? -4.4 2.2 1 1.6e+04 6 24 .. 1139 1176 .. 1138 1204 .. 0.58 27 ? -2.6 0.6 0.38 6.2e+03 4 11 .. 1214 1221 .. 1214 1236 .. 0.80 28 ! 3.4 6.3 0.0049 80 18 38 .. 1357 1377 .. 1334 1384 .. 0.83 29 ! 15.9 2.3 6.4e-07 0.01 1 26 [. 1406 1430 .. 1406 1432 .. 0.95 30 ? -6.7 12.2 1 1.6e+04 1 48 [. 1439 1508 .. 1439 1516 .. 0.63 31 ! 4.2 14.0 0.0028 46 2 41 .. 1516 1552 .. 1515 1561 .. 0.72 32 ? -1.7 0.3 0.2 3.3e+03 5 39 .. 1575 1623 .. 1575 1630 .. 0.72 33 ? -2.4 0.1 0.33 5.5e+03 30 44 .. 1641 1655 .. 1639 1661 .. 0.81 34 ? -3.4 0.6 0.67 1.1e+04 6 22 .. 1767 1796 .. 1766 1807 .. 0.68 35 ? -2.0 0.1 0.24 3.9e+03 31 46 .. 1909 1928 .. 1893 1929 .. 0.78 36 ? -0.3 9.6 0.072 1.2e+03 19 39 .. 1996 2017 .. 1983 2029 .. 0.69 37 ! 7.5 3.9 0.00026 4.3 1 25 [. 2044 2067 .. 2044 2070 .. 0.94 38 ! 12.5 0.4 7.2e-06 0.12 2 15 .. 2078 2090 .. 2078 2097 .. 0.82 39 ! 13.0 18.9 5.2e-06 0.085 1 37 [. 2098 2177 .. 2098 2180 .. 0.98 40 ! 2.6 14.4 0.0092 1.5e+02 1 46 [. 2174 2219 .. 2174 2220 .. 0.57 41 ! 14.0 4.0 2.4e-06 0.04 16 38 .. 2233 2255 .. 2231 2264 .. 0.86 42 ? 2.2 0.3 0.012 2e+02 2 22 .. 2252 2271 .. 2251 2274 .. 0.86 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 2.3e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323209_2 40 LPAASPGPELSPVSLHRPSS 59 9*****************98 PP == domain 2 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323209_2 67 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 108 788********.***********************99765555 PP == domain 3 score: 25.6 bits; conditional E-value: 6e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323209_2 119 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 153 9***********.*******************9755 PP == domain 4 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323209_2 153 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 221 5569****************************************9999999999999555566666665 PP == domain 5 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323209_2 240 PALASRWPLQ-AQLLSQDVISRPK 262 9*********.******9999995 PP == domain 6 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323209_2 289 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 317 9**.************************98 PP == domain 7 score: 19.7 bits; conditional E-value: 4e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323209_2 333 FGPVPVQLTATNVGPKLPQVKLSRPA 358 78889********************5 PP == domain 8 score: 20.5 bits; conditional E-value: 2.3e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323209_2 372 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 400 69***.**********************96 PP == domain 9 score: 3.3 bits; conditional E-value: 0.0052 DUF4705 24 rpsaqLpvAsaGpklp 39 + sa+Lp+As G lp T323209_2 399 QVSACLPAASTGTALP 414 569*********9987 PP == domain 10 score: 15.8 bits; conditional E-value: 6.9e-07 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 r Lq + ++++s lsr s ++s+ p+l p+gLsrPss T323209_2 458 RTLQ-AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 496 88**.*********************************98 PP == domain 11 score: 1.2 bits; conditional E-value: 0.024 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323209_2 498 SQWPLQAKIVLKSASPGPTPS 518 577777655666666665554 PP == domain 12 score: 6.3 bits; conditional E-value: 0.00063 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323209_2 536 PALVCKWPLQEQNCLKSASPGPASCFP 562 999*******99999999999988776 PP == domain 13 score: 14.4 bits; conditional E-value: 1.8e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323209_2 566 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 594 8***********.****************9 PP == domain 14 score: 0.3 bits; conditional E-value: 0.047 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323209_2 601 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 637 567777888888888866567799999*********8 PP == domain 15 score: 9.5 bits; conditional E-value: 6e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323209_2 638 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 672 57777.999*********************998877 PP == domain 16 score: 20.2 bits; conditional E-value: 2.8e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323209_2 685 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 731 9********995..4689999**************************97 PP == domain 17 score: -2.2 bits; conditional E-value: 0.28 DUF4705 7 srrpLqapa 15 srrpLq ++ T323209_2 732 SRRPLQ-AQ 739 79****.66 PP == domain 18 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323209_2 747 PGPAPASRCPLQA-Q 760 9***********4.4 PP == domain 19 score: 20.7 bits; conditional E-value: 1.9e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323209_2 768 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 818 9*******************************9.89**********876666 PP == domain 20 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323209_2 822 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 905 8*********************************************6515699*****************************98 PP == domain 21 score: 8.4 bits; conditional E-value: 0.00013 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323209_2 905 LPASSPGPALPPGCVSRPDCCL 926 9********************9 PP == domain 22 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323209_2 926 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 959 6889****************************87 PP == domain 23 score: 57.0 bits; conditional E-value: 9.1e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323209_2 964 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1011 9*********************************************..97 PP == domain 24 score: -2.5 bits; conditional E-value: 0.34 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323209_2 1012 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1068 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 25 score: 0.0 bits; conditional E-value: 0.056 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323209_2 1045 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1102 599*****888888888876665555556677889999999888886799999*9998 PP == domain 26 score: -4.4 bits; conditional E-value: 1 DUF4705 6 asrrpLqa...................paslqasglsr 24 as+rpL p++l +g s T323209_2 1139 ASHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1176 56666654555555555555555555566666666653 PP == domain 27 score: -2.6 bits; conditional E-value: 0.38 DUF4705 4 APasrrpL 11 A as++pL T323209_2 1214 ALASHWPL 1221 89*****9 PP == domain 28 score: 3.4 bits; conditional E-value: 0.0049 DUF4705 18 qasglsrpsaqLpvAsaGpkl 38 +++++ r+ ++Lp+As+Gp+ T323209_2 1357 ASRRPLRAQLFLPAASPGPTA 1377 578899999999999999986 PP == domain 29 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323209_2 1406 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1430 9***********.9***********7 PP == domain 30 score: -6.7 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslq.......asglsrpsaqLpvAsaGpkl.....ppagLsrPss 48 P+pA+as r pLqa pas+q s++ +++ p ++ + l p +gL rPss T323209_2 1439 PRPAWAS-R*PLQAqvvlksaspgPASQQvsklfwlNSCPAPSRLCRPRTFSSQALrarllPLGGLYRPSS 1508 7788887.666888888888888877777222222223444444555556666666667777777777776 PP == domain 31 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 g+A as+rpLq +++ +++ p+a +As+ p ++p+ T323209_2 1516 GSALASQRPLQ-AQLSPPR--RPPGAKSLPASRQPACSPV 1552 89*********.6666666..4566666666777766665 PP == domain 32 score: -1.7 bits; conditional E-value: 0.2 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323209_2 1575 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 1623 7788866657777787888888999999999843777777777776555 PP == domain 33 score: -2.4 bits; conditional E-value: 0.33 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323209_2 1641 CLAPAPPTLREVGVS 1655 579999999999865 PP == domain 34 score: -3.4 bits; conditional E-value: 0.67 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323209_2 1767 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 1796 788888666667776666666666666554 PP == domain 35 score: -2.0 bits; conditional E-value: 0.24 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323209_2 1909 EATVGPADalllPELGLYRP 1928 58888876667799999999 PP == domain 36 score: -0.3 bits; conditional E-value: 0.072 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323209_2 1996 SRRPLRAQLFLPAASLGPTPaS 2017 6777788888888888887752 PP == domain 37 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323209_2 2044 PGPGQASRWPRQ-AQLLPSDGISRS 2067 9***********.********9985 PP == domain 38 score: 12.5 bits; conditional E-value: 7.2e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323209_2 2078 GPAWASRRPLQA-Q 2090 9**********4.4 PP == domain 39 score: 13.0 bits; conditional E-value: 5.2e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323209_2 2098 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 2177 9***************************************************************.***************7 PP == domain 40 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323209_2 2174 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 2219 9***********44444444444444444444444444444.....................44444 PP == domain 41 score: 14.0 bits; conditional E-value: 2.4e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323209_2 2233 LLPFGRFGRPSSCLPVASLGPAH 2255 578889***************87 PP == domain 42 score: 2.2 bits; conditional E-value: 0.012 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323209_2 2252 GPAHSSQRPFQ-APFFPSGSL 2271 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.51 # Mc/sec: 13142.99 // Query: T323209_3 [L=2343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-23 81.6 53.6 1.9e-11 43.8 11.0 43.0 39 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.5 1.0 0.00025 4.2 4 24 .. 37 57 .. 36 74 .. 0.89 2 ? -0.9 15.6 0.11 1.8e+03 7 36 .. 114 142 .. 87 143 .. 0.73 3 ! 22.9 3.9 4.2e-09 6.8e-05 1 31 [. 140 169 .. 140 182 .. 0.88 4 ! 16.0 2.8 5.8e-07 0.0095 1 35 [. 183 216 .. 183 225 .. 0.90 5 ! 43.8 11.0 1.2e-15 1.9e-11 1 50 [] 227 275 .. 227 275 .. 0.99 6 ! 22.9 0.8 4e-09 6.6e-05 28 50 .] 274 296 .. 273 296 .. 0.97 7 ? -1.3 0.7 0.15 2.5e+03 1 13 [. 301 313 .. 297 344 .. 0.60 8 ! 8.9 1.8 9.8e-05 1.6 20 41 .. 372 398 .. 346 401 .. 0.80 9 ? 0.5 3.4 0.039 6.4e+02 5 26 .. 402 422 .. 402 423 .. 0.94 10 ! 4.5 1.0 0.0023 37 28 47 .. 486 505 .. 478 509 .. 0.85 11 ? 1.6 1.1 0.018 3e+02 7 27 .. 508 527 .. 506 532 .. 0.91 12 ? -0.5 0.2 0.085 1.4e+03 7 24 .. 529 545 .. 527 549 .. 0.87 13 ! 9.3 9.3 7.1e-05 1.2 6 38 .. 549 591 .. 545 597 .. 0.89 14 ! 10.2 6.3 3.7e-05 0.61 1 33 [. 599 630 .. 599 630 .. 0.95 15 ! 3.8 2.5 0.0038 61 19 43 .. 637 662 .. 634 667 .. 0.80 16 ! 15.5 12.7 8.3e-07 0.013 1 38 [. 652 709 .. 652 716 .. 0.87 17 ? 2.0 13.9 0.014 2.2e+02 1 49 [. 705 762 .. 705 763 .. 0.95 18 ? -1.4 7.5 0.16 2.6e+03 7 40 .. 784 815 .. 782 815 .. 0.79 19 ? 1.9 9.5 0.014 2.3e+02 3 26 .. 813 835 .. 804 835 .. 0.93 20 ! 15.0 2.1 1.2e-06 0.02 14 36 .. 846 868 .. 837 873 .. 0.91 21 ? 2.3 0.1 0.011 1.8e+02 27 39 .. 871 883 .. 870 887 .. 0.86 22 ! 5.6 11.8 0.001 17 1 38 [. 878 924 .. 878 932 .. 0.85 23 ! 15.9 2.3 6.4e-07 0.01 1 26 [. 953 977 .. 953 979 .. 0.95 24 ? -1.6 4.4 0.19 3e+03 1 29 [. 986 1024 .. 986 1029 .. 0.77 25 ? 1.1 7.9 0.026 4.3e+02 7 46 .. 1036 1079 .. 1031 1081 .. 0.83 26 ? -3.9 4.5 0.95 1.6e+04 10 39 .. 1071 1097 .. 1070 1107 .. 0.53 27 ? -3.7 2.7 0.81 1.3e+04 7 14 .. 1156 1181 .. 1150 1214 .. 0.56 28 ? 1.4 21.9 0.022 3.5e+02 10 42 .. 1371 1435 .. 1341 1454 .. 0.71 29 ! 33.2 4.4 2.5e-12 4.1e-08 19 50 .] 1468 1499 .. 1457 1499 .. 0.95 30 ! 15.2 21.0 1e-06 0.017 1 50 [] 1504 1565 .. 1504 1565 .. 0.88 31 ? -3.1 0.5 0.55 9e+03 5 23 .. 1591 1622 .. 1587 1625 .. 0.71 32 ? -4.8 3.5 1 1.6e+04 6 42 .. 1641 1680 .. 1639 1687 .. 0.55 33 ? -2.2 0.7 0.28 4.5e+03 6 23 .. 1734 1764 .. 1722 1787 .. 0.63 34 ? -7.1 6.1 1 1.6e+04 6 36 .. 1783 1843 .. 1780 1853 .. 0.46 35 ! 2.6 0.9 0.0087 1.4e+02 8 27 .. 1986 2004 .. 1983 2006 .. 0.87 36 ! 11.3 10.5 1.8e-05 0.29 14 48 .. 2045 2091 .. 2040 2092 .. 0.74 37 ? -6.1 12.4 1 1.6e+04 9 45 .. 2095 2140 .. 2094 2145 .. 0.62 38 ? -14.6 23.8 1 1.6e+04 8 46 .. 2146 2197 .. 2144 2235 .. 0.78 39 ! 22.5 3.2 5.5e-09 8.9e-05 2 36 .. 2241 2274 .. 2240 2281 .. 0.91 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00025 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323209_3 37 APTSRQPLQAQNFLQSASTDQ 57 9********999999987655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323209_3 114 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 142 345555.**********************9 PP == domain 3 score: 22.9 bits; conditional E-value: 4.2e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323209_3 140 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 169 9***********.*****************9 PP == domain 4 score: 16.0 bits; conditional E-value: 5.8e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323209_3 183 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 216 57*******9996..7*******************9 PP == domain 5 score: 43.8 bits; conditional E-value: 1.2e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323209_3 227 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 275 8***********.************************************9 PP == domain 6 score: 22.9 bits; conditional E-value: 4e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323209_3 274 CLLVAYEGPKSPQVDLSRPSSCL 296 9*********************9 PP == domain 7 score: -1.3 bits; conditional E-value: 0.15 DUF4705 1 PgpAPasrrpLqa 13 +gp as+ Lqa T323209_3 301 TGPTSASWGLLQA 313 4555555555665 PP == domain 8 score: 8.9 bits; conditional E-value: 9.8e-05 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323209_3 372 NSLCRPCSCLPGASPGPALaswrlPQA 398 5799*************9965555555 PP == domain 9 score: 0.5 bits; conditional E-value: 0.039 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323209_3 402 PACQQPQQ-AQLFPHSGPFRPN 422 9*******.*********9996 PP == domain 10 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323209_3 486 LLQLASPDQALPPSGLYRPK 505 6889***************6 PP == domain 11 score: 1.6 bits; conditional E-value: 0.018 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323209_3 508 SSQPLQ-GQLLATGGFCRPKS 527 689***.***********986 PP == domain 12 score: -0.5 bits; conditional E-value: 0.085 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323209_3 529 SSQPLH-TQLLSVSGLCR 545 78****.*****999876 PP == domain 13 score: 9.3 bits; conditional E-value: 7.1e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323209_3 549 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 591 788999999999999999********************99888 PP == domain 14 score: 10.2 bits; conditional E-value: 3.7e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323209_3 599 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 630 8***********.*****9999999******98 PP == domain 15 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323209_3 637 SRGLNGPSPCLSAASTGPAStSQWAL 662 78999999999999999976566555 PP == domain 16 score: 15.5 bits; conditional E-value: 8.3e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323209_3 652 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 709 688888888888888888888888888888888**********************876 PP == domain 17 score: 2.0 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323209_3 705 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 762 89999999*************9899******************************997 PP == domain 18 score: -1.4 bits; conditional E-value: 0.16 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323209_3 784 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 815 679***777899******98..667777777765 PP == domain 19 score: 1.9 bits; conditional E-value: 0.014 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323209_3 813 RPPASRRPAQ-AQPQPHSGLSTPS 835 66********.************7 PP == domain 20 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323209_3 846 PKLLPLGRFGRPSSRLPVASSGP 868 899*******************9 PP == domain 21 score: 2.3 bits; conditional E-value: 0.011 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323209_3 871 SFLTTAFPGPVFP 883 79*********97 PP == domain 22 score: 5.6 bits; conditional E-value: 0.001 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323209_3 878 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 924 7888889**************766651678***************86 PP == domain 23 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323209_3 953 PGPGQASRWPLQ-DQLLPSDGVSRPQ 977 9***********.9***********7 PP == domain 24 score: -1.6 bits; conditional E-value: 0.19 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323209_3 986 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1024 8899998.77799988888888888888877776666666 PP == domain 25 score: 1.1 bits; conditional E-value: 0.026 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323209_3 1036 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1079 567799.9**********************997776446666655 PP == domain 26 score: -3.9 bits; conditional E-value: 0.95 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323209_3 1071 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1097 899.5555555..33444444455555442 PP == domain 27 score: -3.7 bits; conditional E-value: 0.81 DUF4705 7 srrpLqa..................p 14 s++pL + T323209_3 1156 SHWPLAShwplpr*qrsv*apcltlA 1181 55555334444445555555555552 PP == domain 28 score: 1.4 bits; conditional E-value: 0.022 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323209_3 1371 RLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 1435 45556666666666666666666666666667765577779********************5543 PP == domain 29 score: 33.2 bits; conditional E-value: 2.5e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323209_3 1468 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1499 589****************************9 PP == domain 30 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++glsrps+++ +Gp++ p +gL+ P CL T323209_3 1504 TGPALAVEQPLQ-APLLPPRGLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNACL 1565 8***********.************************99988887777777777777777776 PP == domain 31 score: -3.1 bits; conditional E-value: 0.55 DUF4705 5 PasrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323209_3 1591 LASHRPLPC*ersa*apclapaPAMLREVGVS 1622 58888886677777777777777777777665 PP == domain 32 score: -4.8 bits; conditional E-value: 1 DUF4705 6 asrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL ++ l p + + +++a+p+l ++g T323209_3 1641 ASHRPLPR*erla*APCLTLA---PPTLTPCLTPAPPTLTEVG 1680 566666555555553333222...4555556666666666555 PP == domain 33 score: -2.2 bits; conditional E-value: 0.28 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323209_3 1734 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 1764 5555554477777777777777777776665 PP == domain 34 score: -7.1 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGp 36 as+rpL p++l + p + + ++ a+p T323209_3 1783 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPP 1843 5666665555555655555555555555553333333333333221102223333444444 PP == domain 35 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323209_3 1986 ARPLQ-THLQPPGVLSGPSS 2004 69***.99999999999987 PP == domain 36 score: 11.3 bits; conditional E-value: 1.8e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323209_3 2045 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 2091 555699*******************6666666666666666666666 PP == domain 37 score: -6.1 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323209_3 2095 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 2140 7888.666666654122222277778886577888865558888888 PP == domain 38 score: -14.6 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323209_3 2146 SQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 2197 6888887777633333333667788888888888888888788888888888 PP == domain 39 score: 22.5 bits; conditional E-value: 5.5e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323209_3 2241 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 2274 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 13142.99 // Query: T051538_1 [L=4565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0055 16.4 6.3 0.51 10.1 1.1 2.3 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.1 3.1e-05 0.51 9 39 .. 111 141 .. 110 142 .. 0.70 2 ! 9.9 0.7 3.8e-05 0.63 3 40 .] 140 177 .. 139 180 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.1e-05 Pentapeptide_2 9 GsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 Gs+ tG++ +Gs+ tGs +Gs+ tG + tG T051538_1 111 GSVATGTVAMGSVATGSVATGSVATGTVATG 141 7777777777777777777777777777776 PP == domain 2 score: 9.9 bits; conditional E-value: 3.8e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntGs 40 tGs+ +G++ tG++ +G++ tGs Gs+ Gs tGs T051538_1 140 TGSVATGTVATGSVATGTVATGSVARGSVARGSMATGS 177 78888888888888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 22135.07 // Query: T051538_2 [L=4565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 32 (0.00196247); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 22135.07 // Query: T051538_3 [L=4565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.60 # Mc/sec: 21766.15 // Query: T369071_1 [L=1533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8599.32 // Query: T369071_2 [L=1533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 8433.95 // Query: T369071_3 [L=1533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 7973.91 // Query: T275900_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 14.9 0.0 0.04 13.2 0.0 1.8 1 DUF1510 Protein of unknown function (DUF1510) 0.045 13.9 0.0 0.17 12.1 0.0 1.9 1 DUF912 Nucleopolyhedrovirus protein of unknown function 0.057 13.2 0.2 0.12 12.2 0.2 1.5 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.3 10.8 5.6 0.6 9.9 5.6 1.4 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 9.9e-06 0.04 5 58 .. 610 663 .. 605 668 .. 0.65 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 9.9e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275900_1 610 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 663 334444555566667777777777788888888888887777777666665554 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 4.1e-05 0.17 39 86 .. 593 638 .. 572 654 .. 0.44 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 4.1e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYf 86 ++++++++++ ++++++++++++ + +i ++++++++++++v + T275900_1 593 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--I 638 111222222222222223334444444444444444444433221..1 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.2 2.9e-05 0.12 86 139 .. 591 642 .. 566 650 .. 0.52 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 LRRC37AB_C 86 nesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275900_1 591 RHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 642 333333344444455556666667777777777666666555555554444..4 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 5.6 0.00015 0.6 26 58 .. 623 655 .. 615 663 .. 0.68 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00015 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssna 58 +++ti+++++iii+ ++++ s s+ s sss++ T275900_1 623 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSS 655 678999999999888888876554444333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1255 (0.0769655); expected 326.1 (0.02) Passed bias filter: 308 (0.0188888); expected 326.1 (0.02) Passed Vit filter: 151 (0.00926039); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.23u 0.43s 00:00:02.66 Elapsed: 00:00:00.70 # Mc/sec: 10830.28 // Query: T275900_2 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.8 11.5 0.22 11.7 11.5 1.4 1 DUF3446 Domain of unknown function (DUF3446) 4 6.8 12.4 6.2 6.2 12.4 1.2 1 SR-25 Nuclear RNA-splicing-associated protein Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 11.5 2.7e-05 0.22 20 68 .. 608 654 .. 599 661 .. 0.49 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.7e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssel 68 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ T275900_2 608 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHR 654 233444..23333566666666666666666555555444433333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 12.4 0.00076 6.2 65 98 .. 621 653 .. 618 660 .. 0.31 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00076 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275900_2 621 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 653 2222222222222222222222222222.22222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1523 (0.0934012); expected 326.1 (0.02) Passed bias filter: 582 (0.0356924); expected 326.1 (0.02) Passed Vit filter: 426 (0.0261254); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.91u 0.39s 00:00:03.30 Elapsed: 00:00:00.74 # Mc/sec: 10241.00 // Query: T275900_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1405 (0.0861646); expected 326.1 (0.02) Passed bias filter: 558 (0.0342205); expected 326.1 (0.02) Passed Vit filter: 389 (0.0238562); expected 16.3 (0.001) Passed Fwd filter: 104 (0.00637802); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.36u 0.49s 00:00:04.85 Elapsed: 00:00:00.98 # Mc/sec: 7733.00 // Query: T293086_1 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.46 # Mc/sec: 8445.67 // Query: T293086_2 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.46 # Mc/sec: 8439.45 // Query: T293086_3 [L=1357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.46 # Mc/sec: 8439.45 // Query: T381584_1 [L=1384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.49 # Mc/sec: 8080.39 // Query: T381584_2 [L=1384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 8080.39 // Query: T381584_3 [L=1383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 7913.06 // Query: T143992_1 [L=1916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 10747.75 // Query: T143992_2 [L=1916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.47 # Mc/sec: 11662.45 // Query: T143992_3 [L=1916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.48 # Mc/sec: 11419.48 // Query: T089849_1 [L=4113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.27s 00:00:01.40 Elapsed: 00:00:00.55 # Mc/sec: 21393.81 // Query: T089849_2 [L=4112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.31s 00:00:01.44 Elapsed: 00:00:00.57 # Mc/sec: 20282.30 // Query: T089849_3 [L=4112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 19938.53 // Query: T099989_1 [L=1862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 9512.26 // Query: T099989_2 [L=1861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-12 45.7 0.2 1.9e-11 44.5 0.2 1.6 1 KIAA1430 KIAA1430 homologue Domain annotation for each model (and alignments): >> KIAA1430 KIAA1430 homologue # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.5 0.2 1.2e-15 1.9e-11 5 68 .. 384 447 .. 383 453 .. 0.87 Alignments for each domain: == domain 1 score: 44.5 bits; conditional E-value: 1.2e-15 KIAA1430 5 lknikssidnkapkkpshlskkkkklqleeerlaeiereNqiLleklseimrrkgkkknassqs 68 ++++++ +d++ap +++hl++k k+l+leeerl+ ier+N++Llek +mr++g+++++++++ T099989_2 384 VQSAQPLVDTRAPLTFRHLHLKLKRLKLEEERLSVIERDNRLLLEKVASVMRTRGQTDSKNNSK 447 6899**************************************************9744433333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.55 # Mc/sec: 9680.01 // Query: T099989_3 [L=1861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 9859.27 // Query: T035438_1 [L=2162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 585 (0.0358764); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 10851.08 // Query: T035438_2 [L=2161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 11240.46 // Query: T035438_3 [L=2161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 542 (0.0332393); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 11240.46 // Query: T143994_1 [L=2227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 12020.88 // Query: T143994_2 [L=2227] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.6 0.2 0.026 14.0 0.2 1.2 1 RabGAP-TBC Rab-GTPase-TBC domain Domain annotation for each model (and alignments): >> RabGAP-TBC Rab-GTPase-TBC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.2 1.6e-06 0.026 125 177 .. 676 728 .. 670 731 .. 0.91 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.6e-06 RabGAP-TBC 125 dlytssfpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflr 177 ++++s++ +l+r l e++l+k + k+++hl +egl +e+f+++w+l +f+ T143994_2 676 SVLQSNTAQLRRLLLYQEQVLHKCFLKIMRHLGKEGLCIECFMLRWLLQCFID 728 5678888999*****************************************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2227 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.62 # Mc/sec: 10275.92 // Query: T143994_3 [L=2226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2226 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 9950.32 // Query: T281913_1 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4116.69 // Query: T281913_2 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.65 # Mc/sec: 3736.68 // Query: T281913_3 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3855.31 // Query: T222194_1 [L=1799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 8873.51 // Query: T222194_2 [L=1799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 9029.18 // Query: T222194_3 [L=1799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 7917.90 // Query: T070836_1 [L=2734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 11502.22 // Query: T070836_2 [L=2734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.64 # Mc/sec: 12221.11 // Query: T070836_3 [L=2733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.69 # Mc/sec: 11331.37 // Query: T227647_1 [L=5488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.7 3.3 3e+02 1.5 0.1 4.9 5 Peptidase_M24_C C-terminal region of peptidase_M24 Domain annotation for each model (and alignments): >> Peptidase_M24_C C-terminal region of peptidase_M24 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.1 0.018 3e+02 29 55 .. 2646 2672 .. 2641 2681 .. 0.83 2 ? -0.3 0.0 0.063 1e+03 29 48 .. 2698 2717 .. 2686 2727 .. 0.85 3 ? -0.7 0.0 0.086 1.4e+03 30 51 .. 2725 2746 .. 2722 2754 .. 0.84 4 ? 1.1 0.0 0.024 3.9e+02 28 53 .. 2857 2882 .. 2853 2895 .. 0.80 5 ? 0.1 0.0 0.05 8.1e+02 30 49 .. 2937 2956 .. 2898 2966 .. 0.66 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.018 HHHHHHHHHHHHHHHHHHHHTTH.HHH CS Peptidase_M24_C 29 awLnaYhakvleklsplLeeeseeleW 55 + L Y ++v+ kl+ L+++s+++++ T227647_1 2646 NLLQGYAKTVRSKLTTSLRQDSAVKTY 2672 67999*************999866655 PP == domain 2 score: -0.3 bits; conditional E-value: 0.063 HHHHHHHHHHHHHHHHHHHH CS Peptidase_M24_C 29 awLnaYhakvleklsplLee 48 + L Y ++v+ kl+ +L + T227647_1 2698 NLLQGYTKTVWSKLTTRLHQ 2717 57899************954 PP == domain 3 score: -0.7 bits; conditional E-value: 0.086 HHHHHHHHHHHHHHHHHHHTTH CS Peptidase_M24_C 30 wLnaYhakvleklsplLeeese 51 L Y ++v kl+ +L+++s+ T227647_1 2725 LLQGYAKTVQSKLTTRLRQDSA 2746 6889*************99875 PP == domain 4 score: 1.1 bits; conditional E-value: 0.024 HHHHHHHHHHHHHHHHHHHHHTTH.H CS Peptidase_M24_C 28 iawLnaYhakvleklsplLeeeseel 53 + L Y ++v+ kl+ L+++s ++ T227647_1 2857 QNLLQGYAKTVRSKLTTSLRQDSVVK 2882 678999*************9987444 PP == domain 5 score: 0.1 bits; conditional E-value: 0.05 HHHHHHHHHHHHHHHHHHHT CS Peptidase_M24_C 30 wLnaYhakvleklsplLeee 49 L Y ++v kl+ +L+++ T227647_1 2937 SLQGYTKTVQSKLTTRLRQD 2956 35556666666666666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1119 (0.068625); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.37u 0.40s 00:00:02.77 Elapsed: 00:00:00.76 # Mc/sec: 20658.20 // Query: T227647_2 [L=5488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.9 13.4 28 4.6 0.1 7.6 9 Med28 Mediator complex subunit 28 Domain annotation for each model (and alignments): >> Med28 Mediator complex subunit 28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.53 8.7e+03 63 84 .. 2492 2510 .. 2459 2511 .. 0.71 2 ? 1.4 0.0 0.018 2.9e+02 61 96 .. 2531 2563 .. 2521 2573 .. 0.82 3 ? 1.4 0.1 0.017 2.7e+02 68 96 .. 2576 2604 .. 2563 2615 .. 0.80 4 ? 1.7 0.0 0.014 2.3e+02 60 96 .. 2612 2645 .. 2604 2651 .. 0.84 5 ? 0.6 0.0 0.031 5.1e+02 57 95 .. 2658 2696 .. 2646 2722 .. 0.79 6 ? 2.6 0.1 0.0074 1.2e+02 56 96 .. 2735 2775 .. 2717 2789 .. 0.78 7 ? 1.2 0.0 0.02 3.2e+02 60 96 .. 2783 2816 .. 2775 2824 .. 0.83 8 ? 0.8 0.0 0.027 4.4e+02 57 96 .. 2870 2909 .. 2857 2941 .. 0.71 9 ? 4.6 0.1 0.0017 28 56 96 .. 2947 2987 .. 2925 2998 .. 0.79 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.53 Med28 63 lqktseqlatqlkalrekgqnv 84 ++ +l+t+l++ r+ gqn+ T227647_2 2492 VR---SKLTTRLRSPRQCGQNL 2510 33...48999**********96 PP == domain 2 score: 1.4 bits; conditional E-value: 0.018 Med28 61 kHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +q+ +l+t+l++ r+ gqn++ ++ ds++ T227647_2 2531 KTVQS---KLTTRLRSPRQCGQNLLQGYAHQDSAVK 2563 44455...89***************99999999985 PP == domain 3 score: 1.4 bits; conditional E-value: 0.017 Med28 68 eqlatqlkalrekgqnvfgdgtkidstid 96 +l+t+l++ r+ gqn++ ++ ds + T227647_2 2576 SKLTTRLRSTRQCGQNLLQGYAHQDSVVK 2604 489***************99999999885 PP == domain 4 score: 1.7 bits; conditional E-value: 0.014 Med28 60 mkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +++ +l+t+l+ r+ gqn++ ++ dsti T227647_2 2612 TKTVRS---KLTTRLRQPRQCGQNLLQGYANQDSTIK 2645 444455...8*************************96 PP == domain 5 score: 0.6 bits; conditional E-value: 0.031 Med28 57 ellmkHlqktseqlatqlkalrekgqnvfgdgtkidsti 95 +ll+ + + +l+t+l++ r+ gqn++ ++ +s++ T227647_2 2658 NLLQVYAKTVRSKLTTRLRSPRQCGQNLLQGYANQESAV 2696 5677777777789**************987777766666 PP == domain 6 score: 2.6 bits; conditional E-value: 0.0074 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ ds+i T227647_2 2735 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSAIK 2775 56777777777789****************99999999986 PP == domain 7 score: 1.2 bits; conditional E-value: 0.02 Med28 60 mkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +++ +l+t+l++ r+ gqn++ ++ ds+i T227647_2 2783 TKTVRS---KLTTRLRSPRQCGQNLLQGYAHQDSAIK 2816 444555...8****************99999999985 PP == domain 8 score: 0.8 bits; conditional E-value: 0.027 Med28 57 ellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 +ll+ + + +l+t+l++ r+ gqn++ ++ +s++ T227647_2 2870 NLLQVYAKTVWSKLTTRLRSPRQCGQNLLQGYANQESAVK 2909 5677777777789**************9988888888775 PP == domain 9 score: 4.6 bits; conditional E-value: 0.0017 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ dsti T227647_2 2947 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSTIK 2987 45777777777789*************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 888 (0.0544585); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.24u 0.42s 00:00:02.66 Elapsed: 00:00:00.96 # Mc/sec: 16354.41 // Query: T227647_3 [L=5487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 953 (0.0584447); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.40u 0.42s 00:00:02.82 Elapsed: 00:00:00.93 # Mc/sec: 16878.90 // Query: T009717_1 [L=4580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.35s 00:00:01.94 Elapsed: 00:00:00.78 # Mc/sec: 16798.21 // Query: T009717_2 [L=4580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.44s 00:00:02.09 Elapsed: 00:00:00.78 # Mc/sec: 16798.21 // Query: T009717_3 [L=4580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.81 # Mc/sec: 16176.05 // Query: T028434_1 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.28s 00:00:01.30 Elapsed: 00:00:00.69 # Mc/sec: 8777.36 // Query: T028434_2 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 9463.09 // Query: T028434_3 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 8530.11 // Query: T331173_1 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 5486.33 // Query: T331173_2 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 5076.91 // Query: T331173_3 [L=1189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-11 41.9 0.0 1.1e-10 41.2 0.0 1.3 1 dUTPase dUTPase 1.3e-05 25.3 0.0 2e-05 24.6 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.2 0.0 1.3e-14 1.1e-10 13 109 .. 529 625 .. 525 644 .. 0.92 Alignments for each domain: == domain 1 score: 41.2 bits; conditional E-value: 1.3e-14 -SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEE CS dUTPase 13 sAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltael 109 sAg+++s+++ +++pg+t+++p+ +++lp g+ +l+lp S a+k ++v+ gvid dy+ e+++ l n +k++ ++gd + L++ ++ +++ T331173_3 529 SAGLEVSVPEGGMLPPGDTTMIPLSWKLTLPPGHFGLLLPLSQQAKKRVTVLAGVIDLDYQDEISLLLHNGGKEEYVWNTGDPLGCLLVLPCPVIKV 625 8*********************************************************************************999999998876555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 0.0 2.5e-09 2e-05 62 117 .. 400 453 .. 366 455 .. 0.86 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 2.5e-09 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++ p + sD+g+ +t+k++ +++ +gi++s+ ++p+ G++E n +lk T331173_3 400 RKI--PHSIASDQGTHFTAKEVWQWAHAHGIHWSYRVSQQPEAAGLIELWNCLLKS 453 333..999****************************************99988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.59 # Mc/sec: 5765.30 // Query: T337134_1 [L=3396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 602 (0.0369189); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:00.79 # Mc/sec: 12297.95 // Query: T337134_2 [L=3396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.56 # Mc/sec: 17044.52 // Query: T337134_3 [L=3396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.75 # Mc/sec: 12953.84 // Query: T255256_1 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 5933.11 // Query: T255256_2 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.72 # Mc/sec: 5685.90 // Query: T255256_3 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 7177.17 // Query: T158520_1 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.65 # Mc/sec: 1624.07 // Query: T158520_2 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 1730.57 // Query: T158520_3 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.56 # Mc/sec: 1879.97 // Query: T222942_1 [L=1416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.1 7.1 10.3 10 5.8 1.9 2.7 2 zf-C2H2_10 C2H2 zinc-finger Domain annotation for each model (and alignments): >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 1.9 0.00063 10 5 12 .. 4 11 .. 3 11 .. 0.86 2 ? 5.3 1.5 0.00092 15 5 12 .. 200 207 .. 199 207 .. 0.85 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00063 zf-C2H2_10 5 tCSYChet 12 tCSYCh + T222942_1 4 TCSYCHHP 11 8*****75 PP == domain 2 score: 5.3 bits; conditional E-value: 0.00092 zf-C2H2_10 5 tCSYChet 12 +CSYCh + T222942_1 200 ICSYCHHP 207 6*****75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.68 # Mc/sec: 5957.26 // Query: T222942_2 [L=1415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.72 # Mc/sec: 5622.33 // Query: T222942_3 [L=1415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 7360.14 // Query: T235993_1 [L=5614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 768 (0.0470992); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.41s 00:00:02.37 Elapsed: 00:00:00.69 # Mc/sec: 23276.38 // Query: T235993_2 [L=5613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.38s 00:00:02.27 Elapsed: 00:00:00.77 # Mc/sec: 20854.34 // Query: T235993_3 [L=5613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.36s 00:00:02.02 Elapsed: 00:00:00.66 # Mc/sec: 24330.06 // Query: T167371_1 [L=521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 671 (0.0411505); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 2760.17 // Query: T167371_2 [L=521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 811 (0.0497363); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.69 # Mc/sec: 2160.13 // Query: T167371_3 [L=520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.64 # Mc/sec: 2324.42 // Query: T018097_1 [L=2639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.61 # Mc/sec: 12376.61 // Query: T018097_2 [L=2639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.75 # Mc/sec: 10066.31 // Query: T018097_3 [L=2638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 13476.55 // Query: T210243_1 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.64 # Mc/sec: 7451.57 // Query: T210243_2 [L=1666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 7447.10 // Query: T210243_3 [L=1666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8361.65 // Query: T078934_1 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-15 57.2 1.9 2.4e-15 56.8 1.9 1.1 1 Filament Intermediate filament protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 1.9 1.5e-19 2.4e-15 126 238 .. 62 175 .. 59 180 .. 0.94 Alignments for each domain: == domain 1 score: 56.8 bits; conditional E-value: 1.5e-19 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078934_1 62 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 159 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHH CS Filament 223 rqiqsleieleslkkq 238 +iq+l++e+e+ k+q T078934_1 160 CMIQRLTAEVENDKQQ 175 ***********98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 317 (0.0194407); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.52 # Mc/sec: 7152.07 // Query: T078934_2 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-19 68.7 4.9 7.4e-19 68.3 4.9 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.58 10.1 3.0 0.84 9.6 3.0 1.1 1 BRE1 BRE1 E3 ubiquitin ligase Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.3 4.9 9.1e-23 7.4e-19 238 312 .] 606 680 .. 602 680 .. 0.95 Alignments for each domain: == domain 1 score: 68.3 bits; conditional E-value: 9.1e-23 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 238 qkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 ++ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078934_2 606 KRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 680 56689*******************************************************************975 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 3.0 0.0001 0.84 14 69 .. 620 675 .. 609 678 .. 0.87 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0001 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078934_2 620 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 675 445667788889**************************************999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 285 (0.0174782); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 5634.97 // Query: T078934_3 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.70 # Mc/sec: 5312.97 // Query: T184347_1 [L=3029] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3029 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.44s 00:00:01.69 Elapsed: 00:00:00.80 # Mc/sec: 10831.82 // Query: T184347_2 [L=3029] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3029 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.83 # Mc/sec: 10440.31 // Query: T184347_3 [L=3029] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 13.6 2.0 59 3.3 0.0 5.7 7 Calponin Calponin family repeat Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.0036 59 10 24 .. 44 58 .. 44 58 .. 0.94 2 ? -2.0 0.0 0.16 2.7e+03 11 24 .. 74 87 .. 74 87 .. 0.92 3 ? -2.0 0.0 0.17 2.8e+03 11 24 .. 132 145 .. 132 145 .. 0.92 4 ? 2.6 0.1 0.0058 95 12 24 .. 228 240 .. 226 241 .. 0.93 5 ? -0.9 0.0 0.074 1.2e+03 11 20 .. 260 269 .. 260 270 .. 0.95 6 ? -1.0 0.0 0.079 1.3e+03 11 20 .. 293 302 .. 292 303 .. 0.91 7 ? -1.0 0.0 0.079 1.3e+03 11 20 .. 326 335 .. 325 336 .. 0.91 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.0036 Calponin 10 gASQsGMtafGarRh 24 +ASQ+ a+G +R+ T184347_3 44 WASQVDTRAYGQVRW 58 59************8 PP == domain 2 score: -2.0 bits; conditional E-value: 0.16 Calponin 11 ASQsGMtafGarRh 24 ASQ+ a+G +R+ T184347_3 74 ASQVDRIAYGQVRW 87 8999999*****97 PP == domain 3 score: -2.0 bits; conditional E-value: 0.17 Calponin 11 ASQsGMtafGarRh 24 ASQ+ a+G +R+ T184347_3 132 ASQVDRIAYGRVRW 145 8999999*****97 PP == domain 4 score: 2.6 bits; conditional E-value: 0.0058 Calponin 12 SQsGMtafGarRh 24 SQ+G a+G +R+ T184347_3 228 SQVGRRAYGRVRW 240 9***********8 PP == domain 5 score: -0.9 bits; conditional E-value: 0.074 Calponin 11 ASQsGMtafG 20 ASQ+G a+G T184347_3 260 ASQVGRRAYG 269 9*******99 PP == domain 6 score: -1.0 bits; conditional E-value: 0.079 Calponin 11 ASQsGMtafG 20 SQ+G +a+G T184347_3 293 VSQVGRSAYG 302 59*******9 PP == domain 7 score: -1.0 bits; conditional E-value: 0.079 Calponin 11 ASQsGMtafG 20 SQ+G +a+G T184347_3 326 VSQVGRSAYG 335 59*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3029 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 14687.21 // Query: T316305_1 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 6416.43 // Query: T316305_2 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 6737.25 // Query: T316305_3 [L=1412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 7768.25 // Query: T348843_1 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.68 # Mc/sec: 3618.11 // Query: T348843_2 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 4920.63 // Query: T348843_3 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 4316.34 // Query: T051384_1 [L=2989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.67 # Mc/sec: 12762.72 // Query: T051384_2 [L=2989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 12956.09 // Query: T051384_3 [L=2988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.84 # Mc/sec: 10176.38 // Query: T196780_1 [L=2219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 9200.26 // Query: T196780_2 [L=2219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-05 22.0 70.3 5.7 6.5 0.1 28.4 33 Fels1 Fels-1 Prophage Protein-like Domain annotation for each model (and alignments): >> Fels1 Fels-1 Prophage Protein-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.024 4e+02 9 18 .. 837 846 .. 834 846 .. 0.88 2 ? -0.4 0.0 0.05 8.1e+02 9 18 .. 858 867 .. 855 867 .. 0.88 3 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 879 888 .. 877 888 .. 0.88 4 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 900 909 .. 897 909 .. 0.88 5 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 921 930 .. 918 930 .. 0.88 6 ? 1.3 0.0 0.015 2.5e+02 7 18 .. 940 951 .. 937 951 .. 0.86 7 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 963 972 .. 961 972 .. 0.88 8 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 984 993 .. 981 993 .. 0.88 9 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1005 1014 .. 1003 1014 .. 0.88 10 ? 0.6 0.0 0.024 4e+02 9 18 .. 1026 1035 .. 1023 1035 .. 0.88 11 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1047 1056 .. 1044 1056 .. 0.88 12 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1068 1077 .. 1065 1077 .. 0.88 13 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1089 1098 .. 1087 1098 .. 0.88 14 ! 6.5 0.1 0.00035 5.7 9 19 .. 1110 1120 .. 1107 1121 .. 0.90 15 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1131 1140 .. 1128 1140 .. 0.88 16 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1152 1161 .. 1149 1161 .. 0.88 17 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1173 1182 .. 1171 1182 .. 0.88 18 ? 0.6 0.0 0.024 4e+02 9 18 .. 1194 1203 .. 1191 1203 .. 0.88 19 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1215 1224 .. 1212 1224 .. 0.88 20 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1236 1245 .. 1233 1245 .. 0.88 21 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1257 1266 .. 1254 1266 .. 0.88 22 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1278 1287 .. 1275 1287 .. 0.88 23 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1299 1308 .. 1297 1308 .. 0.88 24 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1320 1329 .. 1317 1329 .. 0.88 25 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1341 1350 .. 1339 1350 .. 0.88 26 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1363 1372 .. 1360 1372 .. 0.88 27 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1384 1393 .. 1381 1393 .. 0.88 28 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1405 1414 .. 1403 1414 .. 0.88 29 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1426 1435 .. 1423 1435 .. 0.88 30 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1448 1457 .. 1445 1457 .. 0.88 31 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1469 1478 .. 1467 1478 .. 0.88 32 ? 0.6 0.0 0.025 4.1e+02 9 18 .. 1490 1499 .. 1488 1499 .. 0.88 33 ? 0.7 0.0 0.023 3.8e+02 9 18 .. 1511 1520 .. 1508 1520 .. 0.88 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.024 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 837 DEFSFADGVF 846 68*******9 PP == domain 2 score: -0.4 bits; conditional E-value: 0.05 Fels1 9 tifspanGVf 18 +fs+a G+f T196780_2 858 DEFSFADGIF 867 68*******8 PP == domain 3 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 879 DEFSFADGVF 888 68*******9 PP == domain 4 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 900 DEFSFADGVF 909 68*******9 PP == domain 5 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 921 DEFSFADGVF 930 68*******9 PP == domain 6 score: 1.3 bits; conditional E-value: 0.015 Fels1 7 datifspanGVf 18 ++ +fs+a GVf T196780_2 940 KEDEFSFADGVF 951 5679*******9 PP == domain 7 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 963 DEFSFADGVF 972 68*******9 PP == domain 8 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 984 DEFSFADGVF 993 68*******9 PP == domain 9 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1005 DEFSFADGVF 1014 68*******9 PP == domain 10 score: 0.6 bits; conditional E-value: 0.024 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1026 DEFSFADGVF 1035 68*******9 PP == domain 11 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1047 DEFSFADGVF 1056 68*******9 PP == domain 12 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1068 DEFSFADGVF 1077 68*******9 PP == domain 13 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1089 DEFSFADGVF 1098 68*******9 PP == domain 14 score: 6.5 bits; conditional E-value: 0.00035 Fels1 9 tifspanGVfC 19 +fs+a GVfC T196780_2 1110 DEFSFADGVFC 1120 68********* PP == domain 15 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1131 DEFSFADGVF 1140 68*******9 PP == domain 16 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1152 DEFSFADGVF 1161 68*******9 PP == domain 17 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1173 DEFSFADGVF 1182 68*******9 PP == domain 18 score: 0.6 bits; conditional E-value: 0.024 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1194 DEFSFADGVF 1203 68*******9 PP == domain 19 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1215 DEFSFADGVF 1224 68*******9 PP == domain 20 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1236 DEFSFADGVF 1245 68*******9 PP == domain 21 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1257 DEFSFADGVF 1266 68*******9 PP == domain 22 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1278 DEFSFADGVF 1287 68*******9 PP == domain 23 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1299 DEFSFADGVF 1308 68*******9 PP == domain 24 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1320 DEFSFADGVF 1329 68*******9 PP == domain 25 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1341 DEFSFADGVF 1350 68*******9 PP == domain 26 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1363 DEFSFADGVF 1372 68*******9 PP == domain 27 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1384 DEFSFADGVF 1393 68*******9 PP == domain 28 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1405 DEFSFADGVF 1414 68*******9 PP == domain 29 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1426 DEFSFADGVF 1435 68*******9 PP == domain 30 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1448 DEFSFADGVF 1457 68*******9 PP == domain 31 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1469 DEFSFADGVF 1478 68*******9 PP == domain 32 score: 0.6 bits; conditional E-value: 0.025 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1490 DEFSFADGVF 1499 68*******9 PP == domain 33 score: 0.7 bits; conditional E-value: 0.023 Fels1 9 tifspanGVf 18 +fs+a GVf T196780_2 1511 DEFSFADGVF 1520 68*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.63 # Mc/sec: 10076.48 // Query: T196780_3 [L=2219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00073 18.4 22.1 4.2 6.1 0.1 10.2 11 Transketolase_N Transketolase, thiamine diphosphate binding 0.0067 16.3 0.4 4.3e+02 1.0 0.0 6.9 5 ELK ELK domain Domain annotation for each model (and alignments): >> Transketolase_N Transketolase, thiamine diphosphate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.1 0.01 83 20 60 .. 844 883 .. 837 892 .. 0.84 2 ! 4.1 0.0 0.002 16 17 60 .. 925 967 .. 919 974 .. 0.86 3 ! 2.3 0.0 0.0076 62 18 61 .. 968 1010 .. 964 1018 .. 0.85 4 ! 3.7 0.0 0.0027 22 17 61 .. 1051 1094 .. 1046 1104 .. 0.85 5 ! 6.1 0.1 0.00051 4.2 17 61 .. 1135 1178 .. 1130 1186 .. 0.87 6 ? -1.1 0.0 0.08 6.5e+02 18 40 .. 1199 1221 .. 1192 1240 .. 0.63 7 ? -1.1 0.0 0.081 6.6e+02 18 40 .. 1220 1242 .. 1214 1261 .. 0.62 8 ? 1.3 0.0 0.014 1.2e+02 18 60 .. 1262 1303 .. 1257 1306 .. 0.84 9 ! 4.1 0.0 0.002 17 17 61 .. 1303 1346 .. 1298 1353 .. 0.84 10 ? -1.1 0.0 0.079 6.5e+02 17 61 .. 1367 1410 .. 1363 1417 .. 0.85 11 ? -0.3 0.0 0.044 3.6e+02 17 61 .. 1452 1495 .. 1448 1502 .. 0.78 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.01 HT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEE CS Transketolase_N 20 aksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvL 60 a sGhPG ++g + vl h P d+ w +R vL T196780_3 844 AYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVL 883 789*********99999998887777.******99988887 PP == domain 2 score: 4.1 bits; conditional E-value: 0.002 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEE CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvL 60 ++ a sGhPG ++g + vl h P d+ w +R vL T196780_3 925 LQMAYSGHPGDTFGRKRTSSVLQMAYSGH-PGDTFWGKRTSSVL 967 67899************999998888777.******99988887 PP == domain 3 score: 2.3 bits; conditional E-value: 0.0076 HHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 18 ekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 + sGhPG ++g + vl + h P d+ w +R vL T196780_3 968 QMEYSGHPGDTFGGKRTSSVLQMEYSGH-PGDTFWGKRTSSVLQ 1010 55679*************9999998888.*******99988885 PP == domain 4 score: 3.7 bits; conditional E-value: 0.0027 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g + vl h P d+ w +R vL T196780_3 1051 LQMAYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVLQ 1094 67899***********9999998887777.*******99988885 PP == domain 5 score: 6.1 bits; conditional E-value: 0.00051 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g ++ vl + h P d+ w +R vL T196780_3 1135 LQMAYSGHPGDTFGGKRMSSVLQMEYSGH-PGDTFWGKRTSSVLQ 1178 67899*****************9999988.********9988885 PP == domain 6 score: -1.1 bits; conditional E-value: 0.08 HHHT-S--HHHHHHHHHHHHHHH CS Transketolase_N 18 ekaksGhPGaplgladiaevlfk 40 + a sGhPG ++g + vl T196780_3 1199 QMAYSGHPGDTFGGKRTSSVLQM 1221 56677777777776665555543 PP == domain 7 score: -1.1 bits; conditional E-value: 0.081 HHHT-S--HHHHHHHHHHHHHHH CS Transketolase_N 18 ekaksGhPGaplgladiaevlfk 40 + a sGhPG ++g + vl T196780_3 1220 QMAYSGHPGDTFGGKRTSSVLQM 1242 56677777777776665555543 PP == domain 8 score: 1.3 bits; conditional E-value: 0.014 HHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEE CS Transketolase_N 18 ekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvL 60 + sGhPG ++g + vl h P d+ w +R vL T196780_3 1262 QMVYSGHPGDTFGGKRTSSVLQMAYSGH-PGDTFWGKRTSSVL 1303 66789*********99999998877777.*****999987776 PP == domain 9 score: 4.1 bits; conditional E-value: 0.002 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++g + vl h P+d+ w +R vL T196780_3 1303 LQMAYSGHPGDTFGGKRTSSVLQMAYSGH-PRDTFWGKRMSSVLQ 1346 67899************999998888777.******999888775 PP == domain 10 score: -1.1 bits; conditional E-value: 0.079 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGh G ++g + vl +h P d+ w +R vL T196780_3 1367 LQMAYSGHLGDTFGGKRTSSVLQMAYSRH-PGDTFWGKRMSSVLQ 1410 67899************999998888888.******999887775 PP == domain 11 score: -0.3 bits; conditional E-value: 0.044 HHHHT-S--HHHHHHHHHHHHHHHCT--B-TTBTT-TTS-EEEES CS Transketolase_N 17 vekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLs 61 ++ a sGhPG ++ + vl h P d+ w +R vL T196780_3 1452 LQMAYSGHPGDTFWGKRTSSVLQMAYSGH-PGDTFWGKRTSSVLQ 1495 578999****9998888888887776666.999999999888875 PP >> ELK ELK domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 0.052 4.3e+02 10 16 .. 1349 1355 .. 1344 1355 .. 0.84 2 ? 1.0 0.0 0.052 4.3e+02 10 16 .. 1371 1377 .. 1366 1377 .. 0.84 3 ? 1.0 0.0 0.052 4.3e+02 10 16 .. 1413 1419 .. 1408 1419 .. 0.84 4 ? 1.0 0.0 0.052 4.3e+02 10 16 .. 1434 1440 .. 1429 1440 .. 0.84 5 ? 1.0 0.0 0.052 4.3e+02 10 16 .. 1498 1504 .. 1493 1504 .. 0.84 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.052 ELK 10 YsGylss 16 YsG+l++ T196780_3 1349 YSGHLGD 1355 *****97 PP == domain 2 score: 1.0 bits; conditional E-value: 0.052 ELK 10 YsGylss 16 YsG+l++ T196780_3 1371 YSGHLGD 1377 *****97 PP == domain 3 score: 1.0 bits; conditional E-value: 0.052 ELK 10 YsGylss 16 YsG+l++ T196780_3 1413 YSGHLGD 1419 *****97 PP == domain 4 score: 1.0 bits; conditional E-value: 0.052 ELK 10 YsGylss 16 YsG+l++ T196780_3 1434 YSGHLGD 1440 *****97 PP == domain 5 score: 1.0 bits; conditional E-value: 0.052 ELK 10 YsGylss 16 YsG+l++ T196780_3 1498 YSGHLGD 1504 *****97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 10759.63 // Query: T256196_1 [L=3040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 15530.22 // Query: T256196_2 [L=3040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 15812.59 // Query: T256196_3 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 15525.11 // Query: T129142_1 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-09 36.1 0.3 4.3e-09 35.5 0.3 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) 0.00011 21.7 0.0 0.00018 21.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.3 5.3e-13 4.3e-09 397 504 .. 2514 2614 .. 2481 2617 .. 0.77 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 5.3e-13 XXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHH CS TLV_coat 397 altlallLgGLgiaagvgtGttglvstqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivr 494 a+ l+l+ +G++ g++ t+l + q+++ L +I+ + sl sla+ vl NR L L +e+G +C+ ++ CC y++ sg+ + T129142_1 2514 AIGLILAGVGIAPWDGFAYCQTALRNFQTLETLATS-------TGRAIKGHQASLHSLANAVLDNRFALEYLLAEQGRVCTVINHICCSYINSSGLAK 2604 555555555555556666666666666666666544.......457999************************************************* PP HHHHHHHHHH CS TLV_coat 495 dsiakLqerl 504 +++k+ ++ T129142_1 2605 LQVQKIYQDQ 2614 9999986665 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 2.2e-08 0.00018 108 172 .. 889 955 .. 876 964 .. 0.83 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 2.2e-08 Gag_p30 108 yrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasv..alsf 172 + l g r +p +vk+++q k+e p +fl+r+ ea + t dpe+ e k v +lsf T129142_1 889 FVTCLTEGRRKCIVKPVHYDRVKKITQRKKEIPVVFLNRVPEALGKCTHADPEAAEGKHRVpcILSF 955 55677889999999***************************************98876655225666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 14846.72 // Query: T129142_2 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 15376.96 // Query: T129142_3 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00022 21.3 0.0 0.00038 20.5 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.038 13.4 0.0 0.063 12.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 4.6e-08 0.00038 58 132 .. 1764 1842 .. 1724 1848 .. 0.81 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 4.6e-08 T.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHH CS RNase_H 58 lksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNe 132 l + e vn+yt SkY + + + wk++++ t +++p k k+ ++ll e+a+ + +v + h+kgH+ d ++gN+ T129142_3 1764 LGEREGVNLYTNSKYRFLLLCAHAAIWKEKGM-LTVKNSPGKRKDPIQLLLEAAQlPCQVAVIHCKGHQRDwsliSQGNR 1842 457799************99999999*99999.6666669*********9999999************987666655665 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 7.7e-06 0.063 156 187 .. 936 967 .. 932 969 .. 0.90 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 7.7e-06 Gag_p30 156 pydpedpeqkasvalsfiaqsasdirkklqrl 187 p p +as a+ fi qsa+dir+klq++ T129142_3 936 PCRPRGSRGEASRAMHFILQSAPDIRRKLQKI 967 7788889999********************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.55 # Mc/sec: 15651.34 // Query: T259452_1 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-10 40.8 48.4 1.3e-06 28.7 17.2 4.0 2 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.7 17.2 8.2e-11 1.3e-06 2 70 .. 236 308 .. 235 309 .. 0.91 2 ! 16.7 25.4 4.4e-07 0.0072 2 67 .. 302 371 .. 301 455 .. 0.92 Alignments for each domain: == domain 1 score: 28.7 bits; conditional E-value: 8.2e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259452_1 236 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 308 9****************98779******9988******985567*******9*********9998.9****976 PP == domain 2 score: 16.7 bits; conditional E-value: 4.4e-07 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259452_1 302 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 371 8***************997669*****999889*****985557*******99********7777.89998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 16516.18 // Query: T259452_2 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-07 29.4 35.5 1.4e-05 24.9 10.3 9.4 9 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 10.3 8.7e-10 1.4e-05 7 98 .. 48 139 .. 45 141 .. 0.94 2 ! 21.3 17.2 1.2e-08 0.0002 5 98 .. 134 227 .. 131 231 .. 0.95 3 ! 7.7 8.6 0.00021 3.5 5 96 .. 200 291 .. 197 295 .. 0.80 4 ? -2.0 5.6 0.22 3.5e+03 27 91 .. 310 374 .. 290 384 .. 0.54 5 ? -8.3 13.5 1 1.6e+04 18 73 .. 376 414 .. 343 433 .. 0.44 6 ? -6.7 6.1 1 1.6e+04 14 34 .. 1215 1235 .. 1206 1259 .. 0.40 7 ? -7.4 7.5 1 1.6e+04 44 69 .. 1393 1419 .. 1343 1445 .. 0.62 8 ? -3.1 0.1 0.48 7.9e+03 11 36 .. 1661 1688 .. 1657 1695 .. 0.38 9 ? -3.5 3.8 0.63 1e+04 18 40 .. 2157 2179 .. 2139 2193 .. 0.54 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 8.7e-10 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259452_2 48 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 139 6889999*********************************************************************************9996 PP == domain 2 score: 21.3 bits; conditional E-value: 1.2e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259452_2 134 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 227 6689999*************************************************************************************95 PP == domain 3 score: 7.7 bits; conditional E-value: 0.00021 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 s +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259452_2 200 SAGQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 291 55778888888888888888888888888888888888888888888888888888888888888888888888888888888877766665 PP == domain 4 score: -2.0 bits; conditional E-value: 0.22 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdps 91 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p p T259452_2 310 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAPG 374 33444444445555555555555555555555555555555555555555555555555555554 PP == domain 5 score: -8.3 bits; conditional E-value: 1 Mucin-like 18 gepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssyg 73 ++ sr+P ++ ++ sr+p +++r+p +p ++ s + T259452_2 376 QQDSRTPAPGTQQDSRTPTPGTQQDSRTP-----------------TPVPQALSRT 414 22223333333333333333333333222.................2223333333 PP == domain 6 score: -6.7 bits; conditional E-value: 1 Mucin-like 14 sssygepsraPsssytapsra 34 sss + + +Ps+ +ps+a T259452_2 1215 SSSREPTQLPPSEPAPTPSPA 1235 222222223444443333322 PP == domain 7 score: -7.4 bits; conditional E-value: 1 Mucin-like 44 rdpsssytap.qsapsssytappstps 69 ++p ss t + p+ s t+pp +ps T259452_2 1393 HPPNSSPTHLcTHLPTKSQTQPPVRPS 1419 334444433334445555555555554 PP == domain 8 score: -3.1 bits; conditional E-value: 0.48 Mucin-like 11 aspsssygepsr..aPsssytapsraps 36 + p+ss+ + s +P + + ps+ap T259452_2 1661 RRPCSSILQKSTlrPPDAGGDLPSQAPH 1688 3333333333222233333333333333 PP == domain 9 score: -3.5 bits; conditional E-value: 0.63 Mucin-like 18 gepsraPsssytapsrapsssyg 40 +p+ aPsss + +++p s+ T259452_2 2157 SWPHLAPSSSPGRAAPRPDTSCQ 2179 34555555555555555555443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.54 # Mc/sec: 17127.90 // Query: T259452_3 [L=3233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-15 55.3 102.3 1.1e-06 29.0 16.0 4.8 6 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 16.0 6.6e-11 1.1e-06 2 70 .. 49 121 .. 48 122 .. 0.90 2 ! 23.8 23.2 2.8e-09 4.6e-05 3 68 .. 83 152 .. 70 166 .. 0.40 3 ! 26.7 19.6 3.4e-10 5.5e-06 3 70 .. 116 187 .. 114 199 .. 0.48 4 ! 26.2 19.5 5e-10 8.2e-06 2 70 .. 148 220 .. 147 249 .. 0.93 5 ? -2.6 0.3 0.46 7.6e+03 44 61 .. 658 692 .. 654 708 .. 0.64 6 ? -4.3 0.1 1 1.6e+04 26 36 .. 1477 1487 .. 1476 1489 .. 0.45 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 6.6e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259452_3 49 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 121 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 23.8 bits; conditional E-value: 2.8e-09 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa T259452_3 83 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPA 152 3444444444444443332233343333333344444332222444444344444444443332.334433 PP == domain 3 score: 26.7 bits; conditional E-value: 3.4e-10 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259452_3 116 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 187 5666666666666665544355665555555555555543334555555555555555554443.44444432 PP == domain 4 score: 26.2 bits; conditional E-value: 5e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259452_3 148 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 220 8****************98779*****999889*****985557*******99********8877.9****976 PP == domain 5 score: -2.6 bits; conditional E-value: 0.46 CTD 44 TPawd..........aagsrTPay.......ktaw 61 TP+ + +gs P++ + +w T259452_3 658 TPHPGcdgaaihtacSKGSAAPGWtctvlghCRTW 692 66666666666666677899998864444444444 PP == domain 6 score: -4.3 bits; conditional E-value: 1 CTD 26 payggagsrtP 36 pa++g gsr P T259452_3 1477 PAWHGPGSRHP 1487 34444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.56 # Mc/sec: 16226.43 // Query: T295988_1 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 9804.84 // Query: T295988_2 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-05 24.1 0.0 2.6e-05 23.6 0.0 1.2 1 Serpin Serpin (serine protease inhibitor) Domain annotation for each model (and alignments): >> Serpin Serpin (serine protease inhibitor) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 1.6e-09 2.6e-05 315 366 .. 394 445 .. 393 448 .. 0.86 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 1.6e-09 EEEESSSEEEEEEEEECCTTCS-SSEEEEEECSEEEEEEEETTTTEEEEEEE CS Serpin 315 fievnEeGteaaaatvatllskksspvefkvdrPFlflireektgliLFlGk 366 f+ev Ee t+aa a+ +t ++++s+ +f++ +P lf++++++t+++LF+G+ T295988_2 394 FMEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGR 445 789************5555555666668***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 9986.42 // Query: T295988_3 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 9986.42 // Query: T369028_1 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5650.14 // Query: T369028_2 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5760.93 // Query: T369028_3 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 5538.14 // Query: T381567_1 [L=5204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.052 13.6 0.0 0.099 12.7 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6.1e-06 0.099 18 53 .. 1674 1709 .. 1669 1713 .. 0.89 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.1e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381567_1 1674 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1709 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.61 # Mc/sec: 24406.16 // Query: T381567_2 [L=5204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.64 # Mc/sec: 23262.12 // Query: T381567_3 [L=5204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.61 # Mc/sec: 24406.16 // Query: T001428_1 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 609 (0.0373482); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14896.39 // Query: T001428_2 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 14639.56 // Query: T001428_3 [L=2968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 487 (0.0298663); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 14896.39 // Query: T119713_1 [L=1069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-23 82.5 1.9 4.3e-23 81.9 1.9 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.9 1.9 2.6e-27 4.3e-23 4 131 .. 937 1067 .. 934 1069 .] 0.94 Alignments for each domain: == domain 1 score: 81.9 bits; conditional E-value: 2.6e-27 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 k+ +++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +k F++++ ++ l++l+++++ T119713_1 937 KK-NNFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIhksiNVIHHINRTKDKNHMIISIDAEKVFNKIKQPFMLKTLNKLGI 1033 33.69**************************************************99999999999999***************************** PP T.........................TEEEEESB CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkg 131 + + +++i++++ ++++++ +n ++ e + k+g T119713_1 1034 DGMYLKIIRAIYDKPTANIILNRQKLEAFLLKTG 1067 *********************9998788877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 971 (0.0595486); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5663.38 // Query: T119713_2 [L=1069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-112 376.5 20.4 1.8e-110 369.1 20.4 2.4 1 Transposase_22 L1 transposable element 5.9e-06 26.0 2.1 6.5e-06 25.9 0.5 2.0 2 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.00052 20.1 0.0 0.0025 17.9 0.0 2.1 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 369.1 20.4 3.3e-114 1.8e-110 19 367 .. 65 387 .. 53 388 .. 0.91 Alignments for each domain: == domain 1 score: 369.1 bits; conditional E-value: 3.3e-114 XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXX CS Transposase_22 19 erstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellel 109 + Pt+e+sss at e++++++ f+elr+e+++++ +++elk ++++++ke + +k ++e + v + + l+el T119713_2 65 ISAFPTEEHSSSQAT--EQSWMENYFDELREEGFRRSvitNFSELKKDVRTHCKEAKnLEKRLDEWLTRINS------------VEKTLNYLMEL 145 45679**********..*******************8555799***********998777777775444333............22233479*** PP XXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT CS Transposase_22 110 ktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqsl.qviqdtvkrPnlrliGvdesed 202 kt ++e ++ + s+s d++eervs +ed+++e+++e k+rekr+k+++qsl i d vkrPnl liGv+es+ T119713_2 146 KTMAREHHDACT------------------SIS-S*FDQVEERVSVIEDQMNEMKQEEKFREKRVKRNKQSL*E-ICDCVKRPNLHLIGVPESDG 220 ********9999..................775.5559********************************9887.78****************** PP --HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHH CS Transposase_22 203 eqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek.GrvtlkGkPirltadlsaetlkarr 296 e+ +klen+l++ii+enfPnl+++an +iqei+r P+r++s+r+++rhiivr+tkv++k+k+l+a+r G vt kGkPirltad+saetl+arr T119713_2 221 ENATKLENTLQDIIQENFPNLARQANFQIQEIQRMPQRYSSRRTTPRHIIVRFTKVEMKEKMLRAAR-E*GWVTHKGKPIRLTADISAETLQARR 314 ******************************************************************9.5667*********************** PP HHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 297 ewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 ew+++++ilkek+fqPr++yPakls+i++Geik f +k++lrd+++trPal+++lk + er+++yq+l++ T119713_2 315 EWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTEKQMLRDFVTTRPALQEFLKKalNVERNNQYQPLQNL 387 ********************************************************999************95 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 0.1 2.7 1.5e+04 13 28 .. 221 236 .. 216 237 .. 0.71 2 ! 25.9 0.5 1.2e-09 6.5e-06 17 118 .. 535 644 .. 521 645 .. 0.78 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 2.7 Exo_endo_phos_2 13 eelenllstlekllse 28 e+ ++l++tl+++++e T119713_2 221 ENATKLENTLQDIIQE 236 5678888999998876 PP == domain 2 score: 25.9 bits; conditional E-value: 1.2e-09 Exo_endo_phos_2 17 nllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkeg.ptfeseng..ssiiDltltsdnlak 102 +++ l++l ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l + + k++ tf + + iD ++ s+ l+ T119713_2 535 FIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSMRHKvNKDIQDLNSALHQANLIDIyrtfHP-KSTeYTFFPAPHrtYLKIDHIVGSKALLS 626 455666677777765.8**************998888899999*********999966777444.44448887766644688************ PP Exo_endo_phos_2 103 s..leleeedlgSDHrpi 118 + ++ ++++SDH++i T119713_2 627 KckRTEIITNSLSDHSAI 644 *986667799*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 4.5e-07 0.0025 2 113 .] 424 641 .. 423 641 .. 0.68 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 4.5e-07 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.............................EEEEEEESSSTTSSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla.............................dadaskfgtgkgqggvav 68 t Nvng ++++ ++ +la+++++ + ++ + s ++++ ++d++ ++ +++++g + T119713_2 424 TLNVNG----LNSPIKRHRLANWIESR-PISVLYSG----DPSHMQRHT*aqnkgmeedlpsk*ktkkkagvailvsdKTDFKPTKIKRDKEGHYI 510 778888....66677778888888544.43333332....22222233355555555555566655544444444444334444444444555555 PP EECSEEEEE...............................EEEEEE-SS............................................... CS xxxxxxxxx...............................xxxxxxxxx............................................... RF Exo_endo_phos 69 lsrfpltsl...............................vivlGDfNa............................................... 86 +++ ++++ i++GDfN+ T119713_2 511 MVKGSIQQEltilnicapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrsmrhkvnkdiqdlnsalhqanlidiyrtfhpksteytffp 606 5555554448889999999999999999999999999999*********99999999999999999999999999999999999999999999999 PP .......-BEEEEEEHHHHTTEEEEEEECCH.SSB CS .......xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 .......rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + ++ SDH T119713_2 607 aphrtylKIDHIVGSKALLSKCKRTEIITNSlSDH 641 999998888******96666655555555557999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1079 (0.066172); expected 326.1 (0.02) Passed bias filter: 342 (0.0209739); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5461.12 // Query: T119713_3 [L=1068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 5764.84 // Query: T046251_1 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 4949.78 // Query: T046251_2 [L=916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 5039.46 // Query: T046251_3 [L=916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5241.04 // Query: T124859_1 [L=335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 1843.03 // Query: T124859_2 [L=334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1873.56 // Query: T124859_3 [L=334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1873.56 // Query: T369920_1 [L=3229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 14899.39 // Query: T369920_2 [L=3228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 586 (0.0359377); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.44s 00:00:01.89 Elapsed: 00:00:00.81 # Mc/sec: 11400.94 // Query: T369920_3 [L=3228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 492 (0.0301729); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.64 # Mc/sec: 14429.31 // Query: T110428_1 [L=2983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 637 (0.0390654); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.66 # Mc/sec: 12930.08 // Query: T110428_2 [L=2982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.1 0.8 3.3e-08 32.8 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.8 2e-12 3.3e-08 1 19 [] 2885 2903 .. 2885 2903 .. 0.98 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 2e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T110428_2 2885 SFAGTWMKLETIILSKLTQ 2903 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.86 # Mc/sec: 9919.76 // Query: T110428_3 [L=2982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.71 # Mc/sec: 12015.49 // Query: T370304_1 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 1977.49 // Query: T370304_2 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1258 (0.0771495); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.75 # Mc/sec: 1502.89 // Query: T370304_3 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.069 13.3 46.4 26 5.0 7.8 5.6 3 DUF3432 Domain of unknown function (DUF3432) 1.7 8.8 7.3 19 5.4 0.6 3.7 4 DUF2551 Protein of unknown function (DUF2551) Domain annotation for each model (and alignments): >> DUF3432 Domain of unknown function (DUF3432) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.7 29.5 2 1.6e+04 19 94 .. 30 98 .. 9 179 .. 0.56 2 ? 5.0 7.8 0.0032 26 19 66 .. 181 224 .. 145 260 .. 0.52 3 ? 3.8 4.1 0.0078 63 18 87 .. 217 288 .. 217 296 .. 0.73 Alignments for each domain: == domain 1 score: -6.7 bits; conditional E-value: 2 DUF3432 19 vatsyPspittsyPsPvstsyssPvsssyssPvhtsfPsPsvattypsvtsafqaqvassfpssvasnsyssqvtt 94 v+t++ s i t+yPs ++t s ++++s + t Psv tt sv ++ + +++ + +v + s +tt T370304_3 30 VMTTHLSII-TAYPSVITTHLS--IITTHPSVITT---HPSVITTRLSVITTRLSVITTHLSDAVITTHLSV-ITT 98 333333333.334443332222..12233333322...1333344444433333333333333333333332.222 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0032 DUF3432 19 vatsyPspittsyPsPvstsyssPvsssyssPvhtsfPsPsvattyps 66 v+t++P i t++Ps ++t s ++ s v t++ sv tt+ps T370304_3 181 VITTHPGVI-TTHPSVITTRL-SVITTHLSDAVITTHL--SVITTHPS 224 333333333.33343333222.2222233333333322..23333333 PP == domain 3 score: 3.8 bits; conditional E-value: 0.0078 DUF3432 18 svatsyPspittsyPsPvstsyssPvs....ssyssPvhtsfPsPsvattypsvtsafqaqvassfpssvasns 87 sv+t++Ps i t++P ++t ++ + v t++ s +v tt+ sv ++ + + +++ps ++s T370304_3 217 SVITTHPSVI-TTHPGVITTRLGVITTrlgvITTRLGVITTHLSDAVITTHLSVITTHLSVI-TTHPSVITSQH 288 5788888888.788888888765543311114566789999999999999999999998877.88898777654 PP >> DUF2551 Protein of unknown function (DUF2551) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 1.5 1.3e+04 46 63 .. 38 55 .. 23 66 .. 0.63 2 ? -3.5 0.0 1.5 1.2e+04 46 62 .. 66 82 .. 57 87 .. 0.64 3 ? 5.3 0.1 0.0027 22 45 63 .. 167 185 .. 129 194 .. 0.75 4 ? 5.4 0.6 0.0023 19 45 61 .. 239 255 .. 199 267 .. 0.71 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 1.5 DUF2551 46 vasmvGliasrlGIlkvk 63 +++ +i+++l I+ ++ T370304_3 38 ITAYPSVITTHLSIITTH 55 444445566666666655 PP == domain 2 score: -3.5 bits; conditional E-value: 1.5 DUF2551 46 vasmvGliasrlGIlkv 62 +++ + +i++rl ++ + T370304_3 66 ITTRLSVITTRLSVITT 82 44445566667666655 PP == domain 3 score: 5.3 bits; conditional E-value: 0.0027 DUF2551 45 gvasmvGliasrlGIlkvk 63 ++++ +G+i++rlG++ ++ T370304_3 167 VITTRLGVITTRLGVITTH 185 5667788888888888775 PP == domain 4 score: 5.4 bits; conditional E-value: 0.0023 DUF2551 45 gvasmvGliasrlGIlk 61 ++++ +G+i++rlG++ T370304_3 239 VITTRLGVITTRLGVIT 255 34444555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 692 (0.0424384); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 1784.61 // Query: T119768_1 [L=3160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 21.3 0.0 0.079 13.1 0.0 2.2 2 SEA SEA domain Domain annotation for each model (and alignments): >> SEA SEA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.1 0.0 4.8e-06 0.079 5 38 .. 41 74 .. 38 75 .. 0.93 2 ! 5.9 0.0 0.00086 14 3 35 .. 1261 1293 .. 1259 1296 .. 0.86 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 4.8e-06 SEA 5 gtfkitnleytedlgnpsSeefkelarsieelln 38 +tf+itn+ ++ l np S +++ l++ i ++++ T119768_1 41 VTFTITNEAFSAALLNPASWKHQLLRKIIHHQVR 74 89*************************9999875 PP == domain 2 score: 5.9 bits; conditional E-value: 0.00086 SEA 3 ftgtfkitnleytedlgnpsSeefkelarsiee 35 +++ ++i ++yt+ l++++S+ef +l+ ++++ T119768_1 1261 YEVWLQILVQPYTKALEDKTSPEFWALQGQLTR 1293 667789999***************999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.70 # Mc/sec: 12914.60 // Query: T119768_2 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.64 # Mc/sec: 14120.88 // Query: T119768_3 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 12212.65 // Query: T208132_1 [L=157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-14 51.6 0.1 1.3e-13 51.1 0.1 1.2 1 RESP18 RESP18 domain Domain annotation for each model (and alignments): >> RESP18 RESP18 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.1 0.1 7.8e-18 1.3e-13 28 80 .. 40 92 .. 25 98 .. 0.92 Alignments for each domain: == domain 1 score: 51.1 bits; conditional E-value: 7.8e-18 RESP18 28 LrQlvpqglfwkddltqevltqkmerisrlrpqdpclkdrkavfptrttgvrg 80 rQ vpqglfwkdd+tq v tq+ e+++ l+ ++++l++++a+fptr t+vr+ T208132_1 40 ARQPVPQGLFWKDDITQGVRTQQTEHTPWLHAPEAHLRSGQAAFPTRVTRVRT 92 5999**********************************************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 787.98 // Query: T208132_2 [L=157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.60 # Mc/sec: 748.58 // Query: T208132_3 [L=156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.52 # Mc/sec: 858.25 // Query: T190843_1 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-46 156.7 2.6 9e-46 156.3 2.6 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 156.3 2.6 5.5e-50 9e-46 198 285 .. 807 894 .] 803 894 .] 0.98 Alignments for each domain: == domain 1 score: 156.3 bits; conditional E-value: 5.5e-50 ---TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE CS Transposase_22 198 desedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirlta 285 es+ e+++klen+l++ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhiivr+t+v++k+k+l+a+rekG+vtlkGkPirlta T190843_1 807 SESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTEVEMKEKMLRAAREKGQVTLKGKPIRLTA 894 69************************************************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 4334.88 // Query: T190843_2 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-58 197.1 15.9 5.8e-58 196.4 15.9 1.3 1 Transposase_22 L1 transposable element 0.0008 19.5 8.0 0.0014 18.7 8.0 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0028 16.9 10.7 0.0047 16.2 10.7 1.3 1 GAS Growth-arrest specific micro-tubule binding 0.0045 16.7 9.8 0.007 16.0 9.8 1.2 1 IncA IncA protein 0.0051 16.5 8.2 0.0051 16.5 8.2 2.1 2 TBPIP Tat binding protein 1(TBP-1)-interacting prot 0.0071 15.3 9.8 0.012 14.6 9.8 1.2 1 Atg14 Vacuolar sorting 38 and autophagy-related sub 0.0087 16.1 13.6 0.028 14.5 13.5 1.8 1 ATG16 Autophagy protein 16 (ATG16) ------ inclusion threshold ------ 0.012 16.0 6.4 0.028 14.9 6.4 1.6 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.012 15.9 5.5 0.03 14.7 5.5 1.6 1 Spectrin Spectrin repeat 0.014 15.2 3.0 0.026 14.3 3.0 1.4 1 Sec34 Sec34-like family 0.029 13.6 12.2 0.043 13.1 12.2 1.1 1 APG6 Autophagy protein Apg6 0.033 12.7 4.4 0.048 12.1 4.4 1.2 1 DUF342 Protein of unknown function (DUF342) 0.047 12.9 1.6 0.071 12.3 1.6 1.2 1 Stanniocalcin Stanniocalcin family 0.051 13.9 7.6 1 9.8 7.5 2.3 1 DUF16 Protein of unknown function DUF16 0.059 13.2 2.1 0.099 12.5 2.1 1.4 1 DUF1664 Protein of unknown function (DUF1664) 0.084 13.0 9.8 0.16 12.1 8.8 2.0 2 KLRAQ Predicted coiled-coil domain-containing prote 0.13 11.9 10.0 0.22 11.3 10.0 1.3 1 Mnd1 Mnd1 family 0.14 10.9 15.4 0.21 10.3 15.4 1.1 1 DUF812 Protein of unknown function (DUF812) 0.23 9.7 7.1 0.32 9.2 7.1 1.2 1 DUF4613 Domain of unknown function (DUF4613) 0.27 11.3 6.9 0.035 14.1 2.5 1.8 2 Med2 Mediator complex subunit 2 0.44 10.3 3.1 1.7 8.4 0.4 2.1 2 Sec8_exocyst Sec8 exocyst complex component specific domai 0.61 10.0 5.0 0.7 9.8 4.1 1.5 1 P4Ha_N Prolyl 4-Hydroxylase alpha-subunit, N-termina 1.1 9.4 14.7 2 8.5 14.7 1.4 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1.1 9.1 11.2 3.2 7.7 11.0 1.7 1 ADIP Afadin- and alpha -actinin-Binding 1.2 9.1 12.0 4.9 7.1 12.0 1.9 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 1.4 8.6 9.2 2.6 7.7 9.2 1.4 1 ATP-synt_D ATP synthase subunit D 2 9.0 6.8 2.4 8.8 4.3 2.0 2 Occludin_ELL Occludin homology domain 2.3 7.6 5.6 3.3 7.1 5.6 1.2 1 Exonuc_VII_L Exonuclease VII, large subunit 2.3 8.5 7.1 8.9 6.6 0.6 2.4 2 Syntaxin_2 Syntaxin-like protein 4 8.0 10.4 2.1 8.9 7.5 2.0 1 DUF972 Protein of unknown function (DUF972) 6 7.5 8.0 2.4 8.8 4.1 2.1 2 DUF2203 Uncharacterized conserved protein (DUF2203) 6.2 6.9 11.8 2.1 8.4 4.4 2.4 2 JIP_LZII JNK-interacting protein leucine zipper II 7.3 6.4 11.2 1.1 9.1 5.8 1.9 2 OmpH Outer membrane protein (OmpH-like) 8.9 6.5 7.9 5.6 7.1 5.8 1.7 1 Spc24 Spc24 subunit of Ndc80 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 196.4 15.9 1.2e-60 5.8e-58 1 196 [. 648 809 .. 648 824 .. 0.96 Alignments for each domain: == domain 1 score: 196.4 bits; conditional E-value: 1.2e-60 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX.. CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlkii 88 +Gkk+ nrk++nsk++++s+P+ke+sssPat e++++++df+elr+e++++++y+el+e+i++k+ke+e ++k +ee ntek+lk T190843_2 648 MGKKQ---NRKTGNSKTQSASPPPKERSSSPAT--EQSWMENDFDELREEGFRRSNYSELREDIQTKGKEVEnFEKTLEEcitritNTEKCLK-- 735 89***...*************************..*********************************************8888888888888.. PP ................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 89 kekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqvi 183 el+elktk++el++e++ sl+sr+++leervsa+ede++e++re+k+rekr+k++eq+lq+i T190843_2 736 ----------------ELMELKTKARELREECR------------------SLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQNLQEI 796 ................9****************..................******************************************** PP HHHHTTTEEEEES CS Transposase_22 184 qdtvkrPnlrliG 196 +d+vkrPnlrl T190843_2 797 WDYVKRPNLRLKV 809 **********965 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 8.0 3e-06 0.0014 6 100 .. 681 775 .. 678 778 .. 0.97 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 3e-06 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e +R +++++ +++ ++ ++ +++lee+ ++ + k +++++ k +a el++e ++lk + ++le++++++e+e++++ T190843_2 681 WMENDFDELREEGFRRSNYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEM 775 7789****************************************************************************************986 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 10.7 9.8e-06 0.0047 48 128 .. 698 778 .. 684 802 .. 0.81 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 9.8e-06 GAS 48 llseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelykk 128 + se+ ++ + +++++ ek +ee +++n ek ++l++lk++ +el +e ++l+ ++l++r++++e+e +e++++ T190843_2 698 NYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKRE 778 455555566666666666666666666688899999999**********************************99999864 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 9.8 1.5e-05 0.007 76 175 .. 676 795 .. 648 804 .. 0.73 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.5e-05 IncA 76 e.......................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeirel 149 + s+l e+++ +++ e+ le+ +r+ +e++lk+l e +++ + ee +s++sr+ lee++++++ e+ e+ T190843_2 676 AteqswmendfdelreegfrrsnySELREDIQTKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARelrEECRSLKSRCNQLEERVSAMEDEMNEM 775 2444566667777777888888889999999999999999999999999999999999999999999999555566666666666666666666666666 PP IncA 150 relsdlkeevqelrselerlqedlqr 175 +e + +++++r+ ++lq T190843_2 776 K------REGKFREKRIKRNEQNLQE 795 6......6666666666666555554 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.4 0.19 92 111 137 .. 699 725 .. 676 734 .. 0.74 2 ! 16.5 8.2 1.1e-05 0.0051 72 163 .. 735 826 .. 729 829 .. 0.88 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.19 TBPIP 111 teelleeiqelkkeveeieekLeslke 137 el+e iq+ keve+ e+ Le+ T190843_2 699 YSELREDIQTKGKEVENFEKTLEECIT 725 468899999999999999988887544 PP == domain 2 score: 16.5 bits; conditional E-value: 1.1e-05 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeseltteelleeiqelkkeveeieekLeslkesnke..vskeeiekvkkeykklkkewkk 163 +el++l+ + elree+++lk+ +++le+ ++e e+ +e++ e + ++k ++++e+ L+++ + +k + + +e+++ k+l+ +++ T190843_2 735 KELMELKTKARELREECRSLKSRCNQLEERVSAMEDEM--NEMKREGKFREKRIKRNEQNLQEIWDYVKRpnLRLKVMERMEPSWKTLCRILSR 826 589*********************************99..9***********************997765458888888888777777766555 PP >> Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 9.8 2.4e-05 0.012 18 109 .. 696 787 .. 692 811 .. 0.90 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 2.4e-05 Atg14 18 rnrlyekrerlaklksekeslkkkieealelkeeaeqledkiknkkakleeiksliaelrerlqelkdklsqlkkeieekkkklaklsdklk 109 r+ + e+re+++ +e e ++k +ee +++ +++e+ ++++ +k+k++e++ + ++l++r+++l++++s +e++e k++ + + + +k T190843_2 696 RSNYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIK 787 567899*************************************************************************9998777777765 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 13.5 5.8e-05 0.028 39 153 .. 654 776 .. 626 812 .. 0.72 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 5.8e-05 ATG16 39 aklekaaasatssksskaskksakeelasssq..........snskqsakiasleqklaqlreelaelyksrgelaqrllelne...elqkleeklkede 125 +k ++ +++ s ++ k +++++a++++ ++ ++++ ++l + +++ +e+++ k+ e +r++++++ el +l++k++e T190843_2 654 RKTGNSKTQSAS-----PPPKERSSSPATEQSwmendfdelrEEGFRRSNYSELREDIQTKGKEVENFEKTLEECITRITNTEKclkELMELKTKARELR 748 222211111111.....11122222222222255555788887888899999999999999999999999999999999999972224556677888889 PP ATG16 126 erlaeleaeraaleeklkdreeelreke 153 e+ ++l++++++lee+++ e+e++e + T190843_2 749 EECRSLKSRCNQLEERVSAMEDEMNEMK 776 9999999999999999999999998865 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 6.4 5.8e-05 0.028 3 95 .. 699 800 .. 676 802 .. 0.74 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 5.8e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafvee 90 + e +e++q + +++e+ +++ +++ ++++ ++ el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e T190843_2 699 YSELREDIQTKGKEVENFEKTLeeciTRITNTEKClKELMELKTKARELREECRSLKSRCNQLEERVSAMEDemneMKREGKFREKRIKRNEQNLQE 795 5677788876666665555555211344444433355999***************************999873322234477888888888888887 PP Syntaxin-6_N 91 vreev 95 + + v T190843_2 796 IWDYV 800 76665 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 5.5 6.3e-05 0.03 2 94 .. 712 802 .. 704 806 .. 0.91 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 6.3e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f++ ++e+ i+++e+ l ++l + +++++l ++++ l+ ++ +erv a ++ +++ eg++ +++i+ ++l+e W+ +k+ T190843_2 712 EVENFEKTLEECITRITNTEKCL--KELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQNLQEIWDYVKR 802 56789999999999999999999..777788889999999************************************************99876 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 3.0 5.3e-05 0.026 3 63 .. 714 774 .. 712 781 .. 0.90 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 5.3e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrleelaee 63 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + +e+ +e T190843_2 714 ENFEKTLEECITRITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNE 774 6789999*****************************************9988887776665 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 12.2 9e-05 0.043 25 109 .. 696 791 .. 679 816 .. 0.48 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 9e-05 APG6 25 rdayeeflkklekekkseek...........eeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalkl 109 r +y+e+ ++++++ k+ e+ +++e+ kel +l+ + +el+ee + l++ +++lee ++++e+e++e+++e + ++ + ++ T190843_2 696 RSNYSELREDIQTKGKEVENfektleecitrITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQ 791 555555555555554443312111111111112344455555555555555555555555555555555555555555544443333333333333 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 4.4 0.0001 0.048 333 424 .. 731 814 .. 690 844 .. 0.55 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.0001 DUF342 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikvnkeiy 424 + ++l el+++ +el+ee++ lk++ ++l++ ++ s +++++++++++ + +++++ e++l+e+ + +++ + ++kv +++ T190843_2 731 EKCLKELMELKTKARELREECRSLKSRCNQLEE-RV-----SAMEDEMNEMKREGKFREKRIKRNEQNLQEIWDYVKRP---NlRLKVMERME 814 233344455555555555555555555555555.33.....23455555555555555555555555555555555555...22555555555 PP >> Stanniocalcin Stanniocalcin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 1.6 0.00015 0.071 104 193 .. 733 826 .. 705 830 .. 0.80 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00015 Stanniocalcin 104 iirrCsalkrmiaevqeeCylkldiCsvakenpeaive.vvklkd..lfpnryysellqslleCdeetve.avrsslvaklgpdlasllqllqk 193 + lk e++eeC + C+ e ++a+ + + ++k +f ++ ++ q l+e + ++ +r ++++++p++++l+++l+ T190843_2 733 CLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDeMNEMKRegKFREKRIKRNEQNLQEIWDYVKRpNLRLKVMERMEPSWKTLCRILSR 826 4455667888899**********************97526556542389**************9999876389*******************97 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 7.5 0.0021 1 32 103 .. 740 811 .. 685 812 .. 0.83 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0021 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHC CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsie 103 k++ +++ ++ ++l+ + n+le+ v++ +++++e+k e k +++++++ ++ l+ i + +++ n Rl +e T190843_2 740 LKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQNLQEIWDYVKRPNLRLKVME 811 345556667777799*****************************************************9998 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 2.1 0.00021 0.099 65 122 .. 710 770 .. 696 802 .. 0.77 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.00021 DUF1664 65 sqridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 +++++ +k+l+e++ +++++ +e++e++ + +e++e+ +s+k+ ++Le++++ +e+ T190843_2 710 GKEVENFEKTLEECITRITNTEkclKELMELKTKARELREECRSLKSRCNQLEERVSAMED 770 4677888888888877666665222577777888888888888888888888888888875 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 7.4 3.6e+03 26 47 .. 697 718 .. 695 729 .. 0.78 2 ? 12.1 8.8 0.00034 0.16 30 90 .. 733 791 .. 711 799 .. 0.71 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 7.4 KLRAQ 26 akeaelkeelkekeqslrkseq 47 ++ +el+e++++k +++ +e+ T190843_2 697 SNYSELREDIQTKGKEVENFEK 718 6778999999999988887776 PP == domain 2 score: 12.1 bits; conditional E-value: 0.00034 KLRAQ 30 elkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkke 90 l +el e +++ r ++E sL+ r +qLe rv+++ +e++e +++ +k ++k +++++ T190843_2 733 CL-KELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKRE-GKFREKRIKRNEQ 791 34.445555566788889************************98755.6655433333333 PP >> Mnd1 Mnd1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 10.0 0.00045 0.22 67 150 .. 695 778 .. 646 812 .. 0.74 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00045 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...S-HHHHHHHHHHHHHHHHH CS Mnd1 67 rekeleklkkeveelkkkikeleekleaekeereeseereelleelqeleeekkelkeeleklke...ldpekleklkeelekakea 150 r++++++l+++++ k++++ e++le+ ++ +++ e+ l+el el+++ +el+ee+ +lk+ +e+++ +++e++++k++ T190843_2 695 RRSNYSELREDIQTKGKEVENFEKTLEECITRITNT---EKCLKELMELKTKARELREECRSLKSrcnQLEERVSAMEDEMNEMKRE 778 567788888999999999999999999999998888...777777777777777777777777766543445555555555555443 PP >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 15.4 0.00044 0.21 242 393 .. 639 795 .. 618 816 .. 0.51 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00044 DUF812 242 eykkrk....keklqkrlaeqlrkaalsseeae.ksaskskkdlaellsefsekntseselskgsrfthaeklqfake...........elakkktetee 325 k +k +k +++ ++ +++a + ++ +s+ ++++ +++ ++e+ +++ f++++ ++ ++ e++ ++ t+ T190843_2 639 RPKVDKttkmGKKQNRKTGNSKTQSASPPPKERsSSPATEQSWMENDFDEL-----------REEGFRRSNYSELREDiqtkgkevenfEKTLEECITRI 727 222222101111111222222222222222222233333333333333333...........33333333333333332111111111111122333333 PP DUF812 326 elrkkre......eeleelqekleeleskieeleeelkklessikqieeeleeekeeneelekelklkkktlel 393 +el el++k el+++ +l++ ++le +++ +e+e++e+k+e + +ek +k +++ l+ T190843_2 728 ------TntekclKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQNLQE 795 ......13444558999999999999999999999999999999999999999999999999999888887765 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 7.1 0.00067 0.32 500 598 .. 628 747 .. 618 797 .. 0.80 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00067 DUF4613 500 splssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkknlekekeaeqlskelerls 575 ++++sv + +++ + ++++++ +++++++ +s + s+++ +++++sp +e +++ +k ke+e+++k+le+ + T190843_2 628 TKNPSVHHHHQRPKVDKTTKMGKKQNRKTGNSKTQ---SASPPPKERSSSPATEqswmendfdelreegfrrsnyselREDIQTKGKEVENFEKTLEECI 724 45556555555557777777777777666666665...34444444445554445568889999999999999999998899999*************** PP DUF4613 576 ekltevqqsLseltdllqngkks 598 +++t+ +++L el++l+++ ++ T190843_2 725 TRITNTEKCLKELMELKTKAREL 747 ****************9988764 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 2.5 7.2e-05 0.035 46 95 .. 708 757 .. 691 764 .. 0.81 2 ? -1.9 0.3 7.4 3.6e+03 70 95 .. 763 788 .. 753 794 .. 0.42 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 7.2e-05 Med2 46 sLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 + +++++F++ L + ++++++++++++l+e k++ +e++e ++ + r T190843_2 708 TKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARELREECRSLKSR 757 4467899******************************9999876655554 PP == domain 2 score: -1.9 bits; conditional E-value: 7.4 Med2 70 syveqlveikkekeee.kekeeeerqr 95 + v +++++ +e+++e k +e++ +r T190843_2 763 ERVSAMEDEMNEMKREgKFREKR-IKR 788 44444544444433330333222.222 PP >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 0.4 0.0036 1.7 72 121 .. 697 746 .. 690 763 .. 0.89 2 ? 2.1 0.2 0.32 1.5e+02 79 130 .. 763 814 .. 752 820 .. 0.83 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0036 Sec8_exocyst 72 gsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyke 121 ++Ys++ + iq ++v++ + lee + +++++k Lkel + k +e T190843_2 697 SNYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKELMELKTKARE 746 48***************************************998777766 PP == domain 2 score: 2.1 bits; conditional E-value: 0.32 Sec8_exocyst 79 ssiqesqekvselKesleeskkklstkkkeLkelnarsakykevieiLdaie 130 + ++ +++++e+K++ + +k +++++++L+e+++ ++ + +++++ +e T190843_2 763 ERVSAMEDEMNEMKREGKFREKRIKRNEQNLQEIWDYVKRPNLRLKVMERME 814 556667788999999999999**************99888887777777776 PP >> P4Ha_N Prolyl 4-Hydroxylase alpha-subunit, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 4.1 0.0015 0.7 17 108 .. 752 857 .. 732 859 .. 0.63 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0015 P4Ha_N 17 eeLesyieeeekkleklkrfleelekeh.......esakedkee......ylsnPlnaFklikRltsdWeeleklleesese....elieqlealkkrke 99 + L+s +++e++++ ++ ++e+++e +++++ + y++ P k++ R+ W++l ++l+ +s + ++++ ++r++ T190843_2 752 RSLKSRCNQLEERVSAMEDEMNEMKREGkfrekriKRNEQ---NlqeiwdYVKRPNLRLKVMERMEPSWKTLCRILSRRTSPi*qgRPTFRFRKYRERHK 848 4455555555555555555555555555555433322333...1555888**********************9999866655565533344444445555 PP P4Ha_N 100 slPteeDle 108 +P ee l+ T190843_2 849 DTPREEQLQ 857 577777665 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 14.7 0.0041 2 58 152 .. 698 801 .. 677 804 .. 0.67 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0041 Jnk-SapK_ap_N 58 eleqLetekerekelrkraeeeleei......edqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhe...retell 144 + ++L+++ + + ++ +++e++lee +++ +e el++k +l+ee+r l+ +++++++++s++e++ +e+k+e + ++ r ++ l T190843_2 698 NYSELREDIQTKGKEVENFEKTLEECitritnTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKrikRNEQNL 793 345666777777777777776666651111112344456667888889999999999999999999999999999999999988877565666666 PP Jnk-SapK_ap_N 145 kklkelve 152 ++ ++v+ T190843_2 794 QEIWDYVK 801 66666665 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 11.0 0.0066 3.2 49 121 .. 731 803 .. 698 811 .. 0.84 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0066 ADIP 49 drdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrl 121 ++ l++ +l+++ r+l+ e +l+s+ ++l++++++ e e+ +++ + ek++k+ eq l++ + ++r T190843_2 731 EKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIKRNEQNLQEIWDYVKRP 803 555566678999**************************************************99988877775 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 12.0 0.01 4.9 23 102 .. 698 780 .. 690 804 .. 0.64 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.01 TPR_MLP1_2 23 klqklqedlekqaeiakeaqqkYer...elvkhaedikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkeele 102 + ++l+ed++++ +++++ ++ e+ +++ ++ +kel +l++++ el++e ++lk++ +++++ +++ e++++e k e + T190843_2 698 NYSELREDIQTKGKEVENFEKTLEEcitRITNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGK 780 56677788887777777777766652223455666677777777777777777777777777777777777777776665543 PP >> ATP-synt_D ATP synthase subunit D # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 9.2 0.0054 2.6 118 195 .. 718 787 .. 690 788 .. 0.90 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0054 SHHHHHHHGGGGHHHHHHTHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH CS ATP-synt_D 118 aqldeavealrellellvelasletslelLdeeikktnrRvNaLekvvIPrleetikyIkseLdEqereeffrlkkvk 195 + l+e++++++++ + l el +l+t+ + L ee + + R N Le e ++ + e+ E+ re +fr k++k T190843_2 718 KTLEECITRITNTEKCLKELMELKTKARELREECRSLKSRCNQLE--------ERVSAMEDEMNEMKREGKFREKRIK 787 57899*************************************775........77899******************99 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 4.3 0.005 2.4 23 92 .. 698 768 .. 694 777 .. 0.86 2 ? 8.5 3.7 0.006 2.9 26 81 .. 732 787 .. 727 802 .. 0.85 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.005 Occludin_ELL 23 eYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshi 92 +Y+el +++++ k+++++e+ l+e ++ ++++k +e l e+k + + +e ++ k rc++L+e+ s + T190843_2 698 NYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKE-LMELKTKARelREECRSLKSRCNQLEERVSAM 768 79*************************************.67777766658899999999999999987765 PP == domain 2 score: 8.5 bits; conditional E-value: 0.006 Occludin_ELL 26 elhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkr 81 ++ +el e++ k +eL++e+++lk + ++ +++ + + +e +++k++ +++ek+ + T190843_2 732 KCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMKREGKFREKRIK 787 67788999999999999999999999999999999999999999999999999865 PP >> Exonuc_VII_L Exonuclease VII, large subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 5.6 0.0069 3.3 147 251 .. 711 795 .. 629 846 .. 0.57 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0069 Exonuc_VII_L 147 eqleelerrlekaikrkl.........eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkk 234 +++e++e+ le+ i+r +e k++ ++l+++++s ++++++ ++r++ +e+++++ +k++ k +++r+++ +++l T190843_2 711 KEVENFEKTLEECITRITntekclkelMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNE-MKREGKFREKRIKRNEQNL------------- 793 3333333333333333221111111112222223333333333333333333333333333333.3333333333333333222............. PP Exonuc_VII_L 235 lkerlelleekkerlee 251 +e T190843_2 794 ---------------QE 795 ...............22 PP >> Syntaxin_2 Syntaxin-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.6 0.019 8.9 16 62 .. 700 743 .. 683 745 .. 0.76 2 ? 6.4 5.0 0.022 10 11 64 .. 726 773 .. 702 795 .. 0.40 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.019 Syntaxin_2 16 eklvkqLgtkrdteelreklhelieeinelikktnellkklsqldns 62 +l+++++tk+ e+++++ ee+ + i++t++ lk+l++l+ + T190843_2 700 SELREDIQTKGKE---VENFEKTLEECITRITNTEKCLKELMELKTK 743 4555555665432...2688899999999999999999999999876 PP == domain 2 score: 6.4 bits; conditional E-value: 0.022 Syntaxin_2 11 nvstleklvkqLgtkrdteelreklhelieeinelikktnellkklsqldnsss 64 +++ ek +k +el+ k++el+ee++ l +++n+l +++s++++ + T190843_2 726 RITNTEKCLKE------LMELKTKARELREECRSLKSRCNQLEERVSAMEDEMN 773 22222222222......3333333333333333333333333333333333332 PP >> DUF972 Protein of unknown function (DUF972) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 7.5 0.0043 2.1 15 77 .. 728 797 .. 711 799 .. 0.78 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0043 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXXXXXXXXXXXXXXXX CS DUF972 15 eqleelleeleelkeelaelleenaeLeleneklrerl.......ekeekeekekkkelsegkenLarlY 77 +++e++l+el elk++ el ee ++L+ ++l er+ ++ ++e k ++k++++ ++nL++++ T190843_2 728 TNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVsamedemNEMKREGKFREKRIKRNEQNLQEIW 797 4667888999999999999999999999999999999988887766666666777888888889998886 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.3 0.99 4.7e+02 40 78 .. 698 736 .. 640 741 .. 0.65 2 ? 8.8 4.1 0.0049 2.4 9 75 .. 731 799 .. 719 812 .. 0.64 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.99 DUF2203 40 kaeaekseaaeleaeleeleaeieelveeieelGvevkd 78 + ++ +++ +++ +e+e+ e+ +ee +++i+++ +k+ T190843_2 698 NYSELREDIQTKGKEVENFEKTLEECITRITNTEKCLKE 736 222222235666666666667777777766666666555 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0049 DUF2203 9 nalLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGve 75 ++ L +l el +++r+lr+e ++l+++ ++ +++ ++ e +e+++e ++ e++i++ ++++e+ T190843_2 731 EKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEdeMNEMKREGKFREKRIKRNEQNLQEIWDY 799 455566666666666666666666665555555554444667888888888888888888888776544 PP >> JIP_LZII JNK-interacting protein leucine zipper II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 1.0 0.24 1.1e+02 37 71 .] 701 735 .. 699 735 .. 0.88 2 ? 8.4 4.4 0.0045 2.1 35 70 .. 737 772 .. 734 773 .. 0.91 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.24 JIP_LZII 37 eLtsereiLreEleslqkakerlesrikelEeelk 71 eL ++ ++ +E+e+ +k++e++ +ri+++E+ lk T190843_2 701 ELREDIQTKGKEVENFEKTLEECITRITNTEKCLK 735 67777778889********************9887 PP == domain 2 score: 8.4 bits; conditional E-value: 0.0045 JIP_LZII 35 vdeLtsereiLreEleslqkakerlesrikelEeel 70 + eL++ LreE +sl++ ++le+r++++E+e+ T190843_2 737 LMELKTKARELREECRSLKSRCNQLEERVSAMEDEM 772 669999999*************************98 PP >> OmpH Outer membrane protein (OmpH-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.2 1.7 8.2e+02 45 67 .. 699 721 .. 674 726 .. 0.61 2 ? 9.1 5.8 0.0022 1.1 22 91 .. 728 795 .. 725 815 .. 0.85 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 1.7 HHHHHHHHHHHHHHHHHHHHHHH CS OmpH 45 fkklqaeleakekelqkkqeelq 67 +++l++++++k+ke ++ +++l+ T190843_2 699 YSELREDIQTKGKEVENFEKTLE 721 24555555555555555555554 PP == domain 2 score: 9.1 bits; conditional E-value: 0.0022 E-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH..HHHHHHHHHH CS OmpH 22 vdvqkileespegkaaqkqlekefkklqaeleakekelqkkqeelqkkakklekeekeqe..lqkkeqelqa 91 +++k+l+e e k+ + +l++e +l+ +++e+ ++++e+++ + +e k++e +++ eq+lq+ T190843_2 728 TNTEKCLKELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMNEMK----REGKFREkrIKRNEQNLQE 795 699******************************************8444....4444444459999999987 PP >> Spc24 Spc24 subunit of Ndc80 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 5.8 0.012 5.6 11 49 .. 735 773 .. 727 818 .. 0.56 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.012 Spc24 11 kelsdleselesleselaklkeeleeleeeeeekeserv 49 kel +l++++ +l++e ++lk+++++lee ++ e+e++ T190843_2 735 KELMELKTKARELREECRSLKSRCNQLEERVSAMEDEMN 773 566666666666666666666666666665555333331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1365 (0.0837115); expected 326.1 (0.02) Passed bias filter: 553 (0.0339139); expected 326.1 (0.02) Passed Vit filter: 163 (0.00999632); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 34 [number of targets reported over threshold] # CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 3875.12 // Query: T190843_3 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 4409.62 // Query: T126481_1 [L=1178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.68 # Mc/sec: 4955.97 // Query: T126481_2 [L=1177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 5261.25 // Query: T126481_3 [L=1177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 6012.85 // Query: T183181_1 [L=953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2157 (0.132283); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 103 (0.00631669); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.45s 00:00:02.56 Elapsed: 00:00:00.82 # Mc/sec: 3324.84 // Query: T183181_2 [L=953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2341 (0.143567); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 115 (0.00705262); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.43s 00:00:02.91 Elapsed: 00:00:00.89 # Mc/sec: 3063.34 // Query: T183181_3 [L=953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2360 (0.144732); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 121 (0.00742058); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.55s 00:00:03.90 Elapsed: 00:00:01.11 # Mc/sec: 2456.19 // Query: T124669_1 [L=4429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.38s 00:00:01.87 Elapsed: 00:00:00.69 # Mc/sec: 18363.21 // Query: T124669_2 [L=4428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:00.71 # Mc/sec: 17841.91 // Query: T124669_3 [L=4428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.37s 00:00:01.84 Elapsed: 00:00:00.72 # Mc/sec: 17594.10 // Query: T316469_1 [L=3690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:00.74 # Mc/sec: 14265.49 // Query: T316469_2 [L=3690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.29s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 14868.26 // Query: T316469_3 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.59 # Mc/sec: 17887.46 // Query: T199691_1 [L=1851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 8975.25 // Query: T199691_2 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 8.0 5.3 3.7 7.6 0.1 3.3 3 DCR Dppa2/4 conserved region Domain annotation for each model (and alignments): >> DCR Dppa2/4 conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.1 0.055 9e+02 39 54 .. 684 699 .. 676 709 .. 0.82 2 ? 7.6 0.1 0.00023 3.7 40 62 .. 881 903 .. 872 905 .. 0.89 3 ? -0.9 0.1 0.11 1.7e+03 37 62 .. 1024 1049 .. 1015 1050 .. 0.87 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.055 DCR 39 isLfLlPacifpppgl 54 +fLlP+ ++pp l T199691_2 684 YHMFLLPSPSSSPPAL 699 469*****99999987 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00023 DCR 40 sLfLlPacifpppgleDNmLcpe 62 fLlP++ ++pp ++D +cp+ T199691_2 881 HVFLLPSSSSSPPAINDSPVCPS 903 57*******************96 PP == domain 3 score: -0.9 bits; conditional E-value: 0.11 DCR 37 rvisLfLlPacifpppgleDNmLcpe 62 + i+L P + +++p l D +cp+ T199691_2 1024 SPIPLNYSPVSVMSSPSLRDSPVCPS 1049 568888999***************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 7783.14 // Query: T199691_3 [L=1850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.8 6.9 10.8 12 5.6 1.9 2.7 2 zf-C2H2_10 C2H2 zinc-finger Domain annotation for each model (and alignments): >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 1.9 0.00084 14 5 12 .. 685 692 .. 684 692 .. 0.86 2 ? 5.6 1.9 0.00072 12 4 12 .. 880 888 .. 879 888 .. 0.86 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.00084 zf-C2H2_10 5 tCSYChet 12 tCSYCh + T199691_3 685 TCSYCHHP 692 8*****75 PP == domain 2 score: 5.6 bits; conditional E-value: 0.00072 zf-C2H2_10 4 itCSYChet 12 i CSYCh + T199691_3 880 IMCSYCHHP 888 88*****75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 7152.07 // Query: T238302_1 [L=2816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.79 # Mc/sec: 10197.59 // Query: T238302_2 [L=2816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 11847.20 // Query: T238302_3 [L=2816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.30s 00:00:01.51 Elapsed: 00:00:00.70 # Mc/sec: 11508.71 // Query: T126475_1 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 5203.13 // Query: T126475_2 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 5545.24 // Query: T126475_3 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 4821.95 // Query: T381501_1 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 5659.08 // Query: T381501_2 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 6467.52 // Query: T381501_3 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6467.52 // Query: T295451_1 [L=398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.68 # Mc/sec: 1674.43 // Query: T295451_2 [L=397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-10 39.2 3.3 4.8e-10 39.2 3.3 2.2 2 BAGE B melanoma antigen family Domain annotation for each model (and alignments): >> BAGE B melanoma antigen family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.2 3.3 2.9e-14 4.8e-10 5 28 .] 82 105 .. 79 105 .. 0.96 2 ? -7.1 6.3 1 1.6e+04 3 12 .. 166 175 .. 165 177 .. 0.79 Alignments for each domain: == domain 1 score: 39.2 bits; conditional E-value: 2.9e-14 BAGE 5 GvmLAASAQALEAkLskeDLPvLA 28 +v+LA+SAQ+L+A+L+ke++Pv++ T295451_2 82 AVFLALSAQLLQARLMKEESPVVS 105 7*********************97 PP == domain 2 score: -7.1 bits; conditional E-value: 1 BAGE 3 AAGvmLAASA 12 A ++m AA A T295451_2 166 ASALMVAAAA 175 7789999977 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.66 # Mc/sec: 1720.83 // Query: T295451_3 [L=397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 1892.92 // Query: T061274_1 [L=458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 870 (0.0533546); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.57 # Mc/sec: 2259.07 // Query: T061274_2 [L=458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1086 (0.0666013); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 131 (0.00803385); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.81 # Mc/sec: 1617.61 // Query: T061274_3 [L=458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.43 9.1 60.2 0.55 8.8 60.2 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 60.2 3.4e-05 0.55 78 248 .. 20 196 .. 2 202 .. 0.49 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 3.4e-05 HHHHHT--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS MIP-T3 78 rkvLagekgeskgkaaktkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekas.e 176 r L ek ++ ++ ++++++ + +++ee++ e++ e+++++e+e+++e+ + k +++++r ++e+++++e++++++ +re ++++ r++++ e T061274_3 20 REQLESEKCGALQPRVAGREAERGVGEGERGEERGGEGRGGEEERQRERERQREERE--KGDRETERGKTERRESRERQRGERHRREIKERERRKRDReE 117 456777888888888888999999999999999999999999999988888866666..55555555555555555555555554443333333333303 PP XXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 177 rekkekkk.....kdsknkkkdkekekkkekssksesgkeee..rskdeerekeadkgkdretnrateeeeesrkssek 248 r + e+++ ++k++++ +e++ e+++++ +++e+e r+++ee e+++ +++ ret+r++ e+e++r+++e+ T061274_3 118 RDQGERQErdrerAERKERERWRERGVRVERQRRETEREEREteRREREETERRERDRERRETERKERETEREREERER 196 3333333311111333333333333333333333222222220022222222223333333333222222323333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1550 (0.095057); expected 326.1 (0.02) Passed bias filter: 507 (0.0310928); expected 326.1 (0.02) Passed Vit filter: 234 (0.0143505); expected 16.3 (0.001) Passed Fwd filter: 82 (0.00502882); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.63u 0.49s 00:00:02.12 Elapsed: 00:00:00.80 # Mc/sec: 1637.83 // Query: T227873_1 [L=2095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.42s 00:00:01.53 Elapsed: 00:00:00.79 # Mc/sec: 7586.63 // Query: T227873_2 [L=2095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.75 # Mc/sec: 7991.25 // Query: T227873_3 [L=2095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.66 # Mc/sec: 9080.97 // Query: T336587_1 [L=3603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-40 136.9 0.0 1e-39 136.4 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 3.6e-14 52.3 2.3 1e-13 50.8 2.3 1.9 1 Integrase_Zn Integrase Zinc binding domain 1.3e-12 48.0 0.0 2.1e-12 47.3 0.0 1.3 1 RNase_H RNase H 2.2e-07 30.5 0.0 3.6e-07 29.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00014 21.9 0.0 0.00027 21.0 0.0 1.4 1 rve Integrase core domain 0.0036 17.2 6.2 0.0036 17.2 6.2 2.4 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.08 12.5 2.5 0.18 11.4 2.5 1.6 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.4 0.0 4.3e-43 1e-39 1 205 [] 1985 2193 .. 1985 2193 .. 0.92 Alignments for each domain: == domain 1 score: 136.4 bits; conditional E-value: 4.3e-43 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqs.q 92 +k Lk++k+a++qygp+sp v+ ++++a +p d l+ a+ + ++l+ ++ w +e + ++ +a++ i+i +d+llg g + T336587_1 1985 FKLLKEFKQAINQYGPGSPLVMGQLKNVAVSNrmIPTDEDALT*AClTPAHFLQfKTSWADEASIQ-AAHNAQAQPRINIAADQLLGVGGWAGFDA*L 2081 689***********************98755445******99897757899999889999998888.555555669****************999999 PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledml 189 +mq +++e++r ++++a eki + g++ +s++ i+QGp py df+aRl+++l+k +ad +a+d++++ La++NANp+Cq++l +r+++ l d++ T336587_1 2082 VMQD-DAIEHLRGVCIRAGEKITSGGKQYPSFSAIKQGPRKPYVDFIARLQESLEKMIADSAAQDIVLQLLAFDNANPDCQAAL*P-IREKAHLVDYI 2177 9*99.****************************************************************************98554.67999****** PP Gag_p24 190 raCqgvggavhkarvl 205 +aC+g+gg hka ++ T336587_1 2178 KACDGIGGNLHKATLM 2193 *************998 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.8 2.3 4.4e-17 1e-13 1 37 [. 2852 2888 .. 2852 2889 .. 0.98 Alignments for each domain: == domain 1 score: 50.8 bits; conditional E-value: 4.4e-17 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+q CptCq T336587_1 2852 ARHFHNLTHVNASGLKRRCSITWKEAKAIIQRCPTCQ 2888 899*********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.0 8.9e-16 2.1e-12 4 142 .. 2724 2849 .. 2721 2850 .. 0.76 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 8.9e-16 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +tDGs++ g+a + +k + ++++ +++++aEL Avie+L a d +n+++DS+Yvv+ tq ++ ++ + t+eq ++ T336587_1 2724 FHCFTDGSSN-----GKASYSGSKS----KVFQMP-YTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIESAQLRFH--TDEQ--LMTl 2804 5689****88.....8888854433....445555.67****************..8999************.8888888655333..4444..4442 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++l ++ + + ++++h++ + ++gN+maDrl +a+ T336587_1 2805 fTQLPRAV--RSRMHPFYITHIRSRTPFpgplAEGNQMADRLIANAI 2849 23555555..345899********9988888889********98875 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.8 0.0 1.5e-10 3.6e-07 2 111 .. 2645 2721 .. 2644 2741 .. 0.83 Alignments for each domain: == domain 1 score: 29.8 bits; conditional E-value: 1.5e-10 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 +Kk+ g++R++ +d++a+n++++ + qpg++++ + +k++ l+ +Dlk+ F++++l+e++ + +af++p T336587_1 2645 KKKS-GKWRML----TDLRAINSVTQP---------MGALQPGLPSPTII--------------PKNWPLIVIDLKDSFFTISLAEQDCEGFAFTIP- 2713 6888.*****7....7***********.........***********555..............9********************************. PP ............ CS RVT_1 100 klinliksflst 111 ++++ T336587_1 2714 ----AVNNLQPA 2721 ....44544444 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 1.1e-07 0.00027 3 36 .. 2905 2936 .. 2904 2941 .. 0.90 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 1.1e-07 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrl 36 +p+++wq+Dvt+++ + g+ ay++v +d+fs++ T336587_1 2905 EPNSVWQMDVTHLP--SFGRLAYVHVCVDTFSHF 2936 69************..56777***********97 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 7 1.6e+04 10 14 .. 1923 1927 .. 1923 1927 .. 0.91 2 ! 17.2 6.2 1.6e-06 0.0036 2 18 .] 2212 2228 .. 2211 2228 .. 0.93 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 7 SSTTT CS zf-CCHC 10 GHiar 14 GH+a+ T336587_1 1923 GHWAK 1927 9**97 PP == domain 2 score: 17.2 bits; conditional E-value: 1.6e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T336587_1 2212 ACFNCGKHGHTKKECRK 2228 7**************86 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 2.5 7.7e-05 0.18 31 48 .. 2210 2227 .. 2209 2228 .. 0.91 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 7.7e-05 zf-CCHC_4 31 prfCfiCgllGHsdkeCp 48 p Cf+Cg GH++keC T336587_1 2210 PGACFNCGKHGHTKKECR 2227 678**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.26u 0.30s 00:00:01.56 Elapsed: 00:00:00.72 # Mc/sec: 14316.07 // Query: T336587_2 [L=3602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-24 86.1 0.1 2.8e-24 85.2 0.1 1.5 1 RVP Retroviral aspartyl protease 7.4e-20 70.8 0.0 1.3e-19 70.0 0.0 1.4 1 dUTPase dUTPase 1.2e-07 31.4 1.1 2.7e-07 30.2 1.1 1.6 1 G-patch G-patch domain 3e-05 23.7 0.1 4.8e-05 23.0 0.1 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycopro ------ inclusion threshold ------ 0.072 13.5 0.0 0.13 12.7 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.2 0.1 8.5e-28 2.8e-24 2 99 .. 2431 2527 .. 2430 2529 .. 0.98 Alignments for each domain: == domain 1 score: 85.2 bits; conditional E-value: 8.5e-28 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 ++rP +++ i+gk++++l+DtGAd++++s +++P wp+ ++ ++ G+g+a e++qs++ +++ + + ++g+++p+i++ +p+nl+GrdlLq++g + T336587_2 2431 DKRPTCEITIQGKKFKGLVDTGADISILSLQHWPSAWPIPPTQFNIVGVGKAPEVYQSSYVLHCEGPDGQSGTIQPIITS-VPINLWGRDLLQQWGTQ 2527 68******************************************************************************.**************987 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.0 0.0 4e-23 1.3e-19 4 112 .. 2300 2410 .. 2297 2422 .. 0.86 Alignments for each domain: == domain 1 score: 70.0 bits; conditional E-value: 4e-23 TBEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS dUTPase 4 eiptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100 + + +++++sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l+R +l++kg+ +++gvidsdy+Ge+++v+ +t+ + k k g+RiAqL+ T336587_2 2300 QCLSPATAGSAAVDLCCTKAVSLLPgEPLQKVPTGVCGPLPAGTIGLVLGRPSLSLKGVQIHTGVIDSDYNGEIQIVI--STSVPWKAKPGERIAQLL 2395 567899*******************555689*****************************************888887..68899************* PP EEEBEC...GEEEEE CS dUTPase 101 farilt...aeleev 112 + ++++ +e++++ T336587_2 2396 ILPYVKmgkSEIKQT 2410 **9999443344333 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 1.1 8.3e-11 2.7e-07 7 44 .. 2541 2578 .. 2536 2579 .. 0.94 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 8.3e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+G Gk+ qG +eP++++++ r lG+ T336587_2 2541 HMMHEMGYVPGMGTGKNLQGLKEPLQVEKQSSRQRLGY 2578 6********************************99987 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.1 1.5e-08 4.8e-05 125 165 .. 3265 3305 .. 3259 3308 .. 0.89 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 1.5e-08 HERV-K_env_2 125 evlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 e e+c+a+ a +l+n+ g ii+w+p+g f nc+ q+ T336587_2 3265 ERTCLEDCIAEQAEVLHNDSCGIIINWSPKGMFSLNCTSQS 3305 56678********************************9996 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 4.1e-05 0.13 2 25 .. 2437 2460 .. 2436 2470 .. 0.92 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.1e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +i+s T336587_2 2437 EITIQGKKFKGLVDTGADISILSL 2460 689******************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.29u 0.29s 00:00:01.58 Elapsed: 00:00:00.69 # Mc/sec: 14934.36 // Query: T336587_3 [L=3602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-14 52.8 1.0 4.5e-14 51.7 1.0 1.6 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 3.2e-08 33.7 0.0 7.2e-08 32.5 0.0 1.5 2 rve Integrase core domain 8.2e-08 31.3 2.6 1.5e-07 30.4 2.6 1.4 1 IN_DBD_C Integrase DNA binding domain 0.0027 17.6 0.3 0.0064 16.4 0.3 1.6 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.7 1.0 1.1e-17 4.5e-14 5 35 .. 2247 2277 .. 2243 2278 .. 0.90 Alignments for each domain: == domain 1 score: 51.7 bits; conditional E-value: 1.1e-17 -TTT-SSBS-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 5 CpRCkkgkHwardChskfdknGnpLsanegr 35 p+CkkgkHwa++Chskfdk+Gn s+n r T336587_3 2247 GPKCKKGKHWANECHSKFDKEGNSISGNAMR 2277 69*************************9866 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.0 3.4 1.4e+04 22 44 .. 846 881 .. 835 886 .. 0.72 2 ! 32.5 0.0 1.8e-11 7.2e-08 45 118 .. 2943 3013 .. 2918 3014 .. 0.80 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 3.4 rve 22 g.............kayllvviddfsrlilaeavsd 44 g ++y + i++ s+ i+ + vs+ T336587_3 846 Gfplprtlvpch*kWLYSHYLILASSKAIYSVRVSH 881 4555555666666699**************999986 PP == domain 2 score: 32.5 bits; conditional E-value: 1.8e-11 rve 45 emdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 e + v + l + +a g p + +Dn++ y s+++++f + ++i++ + p+++q +++vEr+ lk++ T336587_3 2943 E-PSACVKCHLLQCFAVMGI--PASIKTDNAPGYPSQTLATFFSLWNIKHITGIPYNSQGQAIVERMYLSLKQQ 3013 3.333334444456777777..**********************************************999986 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.4 2.6 3.7e-11 1.5e-07 4 49 .. 3068 3112 .. 3065 3113 .. 0.92 Alignments for each domain: == domain 1 score: 30.4 bits; conditional E-value: 3.7e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+d +++W +++++grG++cv P ++++++w+P R +++ T336587_3 3068 LVWWRDPITKRWEI-GKIITWGRGYACVSPGQNQQPIWIPSRHLKP 3112 689*********84.69*************************9996 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.3 1.6e-06 0.0064 23 73 .. 3148 3198 .. 3127 3211 .. 0.80 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.6e-06 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalv 73 t +++pptw q +kl+q+a l + t + +++a + +++ v+ + T336587_3 3148 NTHRTQPPTWGQNRKLSQMAEENLRKAGQPVTMNNLMIALIAVITTAVSIP 3198 6899*****************999999888888888888777777766655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.88 # Mc/sec: 11709.90 // Query: T182966_1 [L=10273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 642 (0.039372); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.36u 0.45s 00:00:03.81 Elapsed: 00:00:01.06 # Mc/sec: 27725.76 // Query: T182966_2 [L=10272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.90u 0.47s 00:00:03.37 Elapsed: 00:00:00.90 # Mc/sec: 32651.61 // Query: T182966_3 [L=10272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.39s 00:00:03.22 Elapsed: 00:00:00.98 # Mc/sec: 29986.17 // Query: T126024_1 [L=2418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 10642.29 // Query: T126024_2 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.65 # Mc/sec: 10637.89 // Query: T126024_3 [L=2417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.57 # Mc/sec: 11921.77 // Query: T294264_1 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.61 # Mc/sec: 2035.41 // Query: T294264_2 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.59 # Mc/sec: 2104.41 // Query: T294264_3 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2528.04 // Query: T356189_1 [L=2532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.84 # Mc/sec: 8623.36 // Query: T356189_2 [L=2532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.68 # Mc/sec: 10652.38 // Query: T356189_3 [L=2531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.66 # Mc/sec: 10970.85 // Query: T368605_1 [L=6493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 650 (0.0398626); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.37s 00:00:02.68 Elapsed: 00:00:00.97 # Mc/sec: 19149.87 // Query: T368605_2 [L=6493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 656 (0.0402306); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.36u 0.43s 00:00:02.79 Elapsed: 00:00:00.84 # Mc/sec: 22113.53 // Query: T368605_3 [L=6493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.37s 00:00:02.53 Elapsed: 00:00:00.72 # Mc/sec: 25799.12 // Query: T259443_1 [L=3904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-13 51.2 91.6 1.5e-06 28.5 16.2 8.5 9 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 16.2 9.4e-11 1.5e-06 2 70 .. 88 160 .. 87 161 .. 0.90 2 ! 26.4 19.6 4.2e-10 6.8e-06 3 70 .. 155 226 .. 153 238 .. 0.48 3 ! 26.1 19.2 5.4e-10 8.8e-06 2 70 .. 187 259 .. 186 274 .. 0.91 4 ! 6.7 1.9 0.00061 10 2 25 .. 242 266 .. 241 288 .. 0.80 5 ! 18.7 5.5 1.1e-07 0.0017 21 67 .. 449 498 .. 434 514 .. 0.71 6 ! 3.5 0.2 0.0061 99 2 16 .. 672 686 .. 656 712 .. 0.71 7 ? -2.9 0.2 0.61 9.9e+03 44 58 .. 852 883 .. 849 901 .. 0.63 8 ? -2.7 4.7 0.5 8.1e+03 12 58 .. 1250 1282 .. 1244 1297 .. 0.49 9 ? -2.3 0.1 0.4 6.5e+03 6 23 .. 1827 1844 .. 1822 1850 .. 0.74 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 9.4e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259443_1 88 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 160 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 26.4 bits; conditional E-value: 4.2e-10 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259443_1 155 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 226 5666666666666665544355665555555555555543334555555555555555554443.44444432 PP == domain 3 score: 26.1 bits; conditional E-value: 5.4e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259443_1 187 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 259 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 4 score: 6.7 bits; conditional E-value: 0.00061 CTD 2 srTPawnsaggsrTPawgad.gsrT 25 srTPa +s+++srTPa g++ +s+T T259443_1 242 SRTPAPGSQQDSRTPAPGTQqDSQT 266 8999999999999999887656676 PP == domain 5 score: 18.7 bits; conditional E-value: 1.1e-07 CTD 21 dgsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 ++srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259443_1 449 QDSRTPAPGTQqDSRTPAPgsQQDSQTPAPGsQQDSRTPAPGSQL-DSRTP 498 467777777666777777763445777777777777777776666.67776 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0061 CTD 2 srTPawnsaggsrTP 16 srTPa +++++srTP T259443_1 672 SRTPAPGTQQDSRTP 686 344444444444443 PP == domain 7 score: -2.9 bits; conditional E-value: 0.61 CTD 44 TPawd..........aagsrTPay.......k 58 TP+ + +gs P++ + T259443_1 852 TPHPGcdgaaihtacSKGSAAPGWtctvlghC 883 56655556666666667888888864444444 PP == domain 8 score: -2.7 bits; conditional E-value: 0.5 CTD 12 gsrTPawgadgsrTpayggagsrtPaynagakTPawdaagsrTPayk 58 +r w a g + pa g r P + ++ Pa++ T259443_1 1250 AARSCSWDAGGGTAPAQG---HRRPRW---------V--QAGRPAWS 1282 344444444333334433...244444.........3..22233333 PP == domain 9 score: -2.3 bits; conditional E-value: 0.4 CTD 6 awnsaggsrTPawgadgs 23 aw++a+ +Paw+ d + T259443_1 1827 AWSQAKLPSAPAWHSDHQ 1844 677777778888887654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.56 # Mc/sec: 19944.07 // Query: T259443_2 [L=3903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-17 63.3 99.7 2.1e-06 28.1 17.6 6.5 6 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 17.6 1.3e-10 2.1e-06 2 70 .. 274 346 .. 266 347 .. 0.92 2 ! 27.0 14.7 2.7e-10 4.4e-06 2 67 .. 340 409 .. 339 426 .. 0.91 3 ! 25.7 17.9 6.9e-10 1.1e-05 2 70 .. 506 578 .. 496 579 .. 0.90 4 ! 27.3 14.5 2.3e-10 3.7e-06 2 67 .. 561 630 .. 560 647 .. 0.91 5 ? -4.4 1.3 1 1.6e+04 42 54 .. 2106 2116 .. 2082 2142 .. 0.55 6 ? -2.9 3.5 0.58 9.4e+03 36 67 .. 3705 3749 .. 3698 3753 .. 0.64 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 1.3e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259443_2 274 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 346 8****************98779******99889*****985567*******9*********9988.9****976 PP == domain 2 score: 27.0 bits; conditional E-value: 2.7e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259443_2 340 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 409 8***************997669******99889*****985557*******99********8777.99999 PP == domain 3 score: 25.7 bits; conditional E-value: 6.9e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +++++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259443_2 506 SRTPAPGTQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 578 8***************9876699****999889*****985557*******99********8777.9****976 PP == domain 4 score: 27.3 bits; conditional E-value: 2.3e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259443_2 561 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 630 8***************997669******99889*****985557*******99********8777.99999 PP == domain 5 score: -4.4 bits; conditional E-value: 1 CTD 42 akTPawdaagsrT 54 akTP + gs+T T259443_2 2106 AKTPPDR--GSQT 2116 4444444..3333 PP == domain 6 score: -2.9 bits; conditional E-value: 0.58 CTD 36 PaynagakTPawdaagsrTPayktawd.............gsrTp 67 P++++ ++ P +++ s +P+++++ s T T259443_2 3705 PHWTTPSAAPDAQQQASTYPGHGSTLTlatatdtaknqplHSHTQ 3749 999888888888899999999944433333333444455555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.55 # Mc/sec: 20301.49 // Query: T259443_3 [L=3903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 28.2 35.8 1.8e-05 24.6 10.3 12.2 14 Mucin-like Mucin-like ------ inclusion threshold ------ 0.094 13.2 1.2 1.8e+02 2.7 0.0 4.8 5 Caskin1-CID Caskin1 CASK-interaction domain Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 10.3 2.2e-09 1.8e-05 7 98 .. 86 177 .. 83 179 .. 0.94 2 ! 20.6 17.5 3.8e-08 0.00031 5 98 .. 172 265 .. 169 268 .. 0.95 3 ! 8.0 8.1 0.00032 2.6 5 96 .. 238 329 .. 234 334 .. 0.77 4 ? 0.0 2.1 0.099 8.1e+02 27 88 .. 337 398 .. 315 410 .. 0.51 5 ! 6.5 17.8 0.00098 8 18 97 .. 414 495 .. 404 498 .. 0.84 6 ? -0.3 3.1 0.13 1e+03 27 93 .. 525 591 .. 499 609 .. 0.52 7 ? 0.2 3.1 0.092 7.5e+02 24 90 .. 566 632 .. 538 637 .. 0.52 8 ? -4.9 13.2 2 1.6e+04 18 66 .. 635 685 .. 632 697 .. 0.66 9 ? -2.6 3.1 0.65 5.3e+03 17 46 .. 964 991 .. 948 1018 .. 0.51 10 ? -1.2 0.8 0.24 1.9e+03 20 38 .. 1397 1414 .. 1387 1418 .. 0.60 11 ? -11.2 9.1 2 1.6e+04 54 68 .. 2172 2186 .. 2133 2218 .. 0.48 12 ? -9.3 9.4 2 1.6e+04 14 56 .. 2862 2904 .. 2853 2905 .. 0.49 13 ? -3.4 0.1 1.2 9.6e+03 11 36 .. 3116 3143 .. 3112 3150 .. 0.38 14 ? -3.8 3.8 1.5 1.3e+04 18 40 .. 3612 3634 .. 3594 3648 .. 0.54 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 2.2e-09 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259443_3 86 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 177 6889999*********************************************************************************9996 PP == domain 2 score: 20.6 bits; conditional E-value: 3.8e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259443_3 172 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 265 6689999*************************************************************************************96 PP == domain 3 score: 8.0 bits; conditional E-value: 0.00032 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 s +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259443_3 238 SAGQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 329 55677888888888888888888888888888888888888888888888888888888888888888888888888888888777666665 PP == domain 4 score: 0.0 bits; conditional E-value: 0.099 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytappr 88 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p T259443_3 337 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPL 398 33444444444455555555555555555555555555555555555555555555555544 PP == domain 5 score: 6.5 bits; conditional E-value: 0.00098 Mucin-like 18 gepsraPsssytapsrapsssygepprd..psssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 ++ sr+P ++ ++ sr+p +++r+ p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259443_3 414 QQDSRTPAPGTQQDSRTPTPGTQQDSRTpcPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQP 495 6788999999999999999999999966115689999999999999999999999999999999999999999999999998 PP == domain 6 score: -0.3 bits; conditional E-value: 0.13 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsss 93 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s T259443_3 525 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALS 591 3344444444444555555555555555555555555555555555555544444444444444443 PP == domain 7 score: 0.2 bits; conditional E-value: 0.092 Mucin-like 24 Psssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdp 90 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p p T259443_3 566 QALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAP 632 3334444444444455555555555555555555555555555555555555555555555555444 PP == domain 8 score: -4.9 bits; conditional E-value: 2 Mucin-like 18 gepsraPsssytapsrapsssygepprdps..ssytapqsapsssytapps 66 ++ sr+P ++ ++ sr+p +++r+p s ++p p s ++p T259443_3 635 QQDSRTPAPGTQQDSRTPTPGTQQDSRTPCprLSAGQPDPCPRYSAGQPDP 685 566777777777777777777777776543226666666666666666643 PP == domain 9 score: -2.6 bits; conditional E-value: 0.65 Mucin-like 17 ygepsraPsssytapsrapsssygepprdp 46 ++ r+P +s+ p+++p +s +++ r+p T259443_3 964 KTN--RKPVHSICRPKEEPPESREAACREP 991 222..3344444444444444433333333 PP == domain 10 score: -1.2 bits; conditional E-value: 0.24 Mucin-like 20 psraPsssytapsrapsss 38 p+++P+ s p+ +p ss T259443_3 1397 PQQDPEASLPHPP-DPASS 1414 4455555555555.34443 PP == domain 11 score: -11.2 bits; conditional E-value: 2 Mucin-like 54 qsapsssytappstp 68 q+ p+s t+p + + T259443_3 2172 QKVPDSPKTPPDRGS 2186 112222222222222 PP == domain 12 score: -9.3 bits; conditional E-value: 2 Mucin-like 14 sssygepsraPsssytapsrapsssygepprdpsssytapqsa 56 sss + + +Ps+ +ps+a + + + +p +t p+++ T259443_3 2862 SSSREPTQLPPSEPAPTPSPAARHRLLPVQPRPPPASTCPSRH 2904 3333344446666666666555555555555554444445544 PP == domain 13 score: -3.4 bits; conditional E-value: 1.2 Mucin-like 11 aspsssygepsr..aPsssytapsraps 36 + p+ss+ + s +P + + ps+ap T259443_3 3116 RRPCSSILQKSTlrPPDAGGDLPSQAPH 3143 3333333333222233333333333333 PP == domain 14 score: -3.8 bits; conditional E-value: 1.5 Mucin-like 18 gepsraPsssytapsrapsssyg 40 +p+ aPsss + +++p s+ T259443_3 3612 SWPHLAPSSSPGRAAPRPDTSCQ 3634 34555555555555555555443 PP >> Caskin1-CID Caskin1 CASK-interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.0 0.03 2.5e+02 35 51 .. 2078 2094 .. 2075 2096 .. 0.83 2 ? -1.8 0.0 0.55 4.5e+03 36 49 .. 2103 2116 .. 2100 2117 .. 0.78 3 ? 2.2 0.0 0.03 2.5e+02 35 51 .. 2126 2142 .. 2123 2144 .. 0.83 4 ? 2.7 0.0 0.022 1.8e+02 35 51 .. 2186 2202 .. 2177 2204 .. 0.82 5 ? -1.8 0.0 0.55 4.5e+03 36 49 .. 2211 2224 .. 2208 2225 .. 0.78 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.03 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259443_3 2078 SQTHLRHPQTEGPKLTS 2094 567899********965 PP == domain 2 score: -1.8 bits; conditional E-value: 0.55 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259443_3 2103 QTQLRHPQTEGPRL 2116 44577*******98 PP == domain 3 score: 2.2 bits; conditional E-value: 0.03 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259443_3 2126 SQTHLRHPQTEGPKLTS 2142 567899********965 PP == domain 4 score: 2.7 bits; conditional E-value: 0.022 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259443_3 2186 SQTHLRHPQTEGPKLTS 2202 667999********965 PP == domain 5 score: -1.8 bits; conditional E-value: 0.55 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259443_3 2211 QTQLRHPQTEGPRL 2224 44577*******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.02u 0.25s 00:00:01.27 Elapsed: 00:00:00.49 # Mc/sec: 22787.39 // Query: T276548_1 [L=3542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 18094.75 // Query: T276548_2 [L=3542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.65 # Mc/sec: 15589.32 // Query: T276548_3 [L=3542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.61 # Mc/sec: 16611.57 // Query: T316993_1 [L=3455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.078 12.7 0.0 0.13 12.0 0.0 1.2 1 Tetraspannin Tetraspanin family Domain annotation for each model (and alignments): >> Tetraspannin Tetraspanin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.9e-06 0.13 37 103 .. 3210 3316 .. 3176 3374 .. 0.69 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.9e-06 ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH............................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF Tetraspannin 37 esaedpailavllivvGvllfllgflGcigalkenkcllltfsllllvlfllelaagilafvftdk............................. 102 + + ++ ++++i + +++ ++++ ++ + ++ + tf++++++ +++ +++i++++ft+ T316993_1 3210 HLITTITTTSTIIITITTITITTTIITIFTMTIVIIITIITFITIMIITIIMATTITIIVITFTSPlpplpssplsshhlhhlhhhhhhlhhhhh 3304 344444555566899999**********************************************9988888888888877777777766666555 PP ............ CS ...........x RF Tetraspannin 103 ...........a 103 + T316993_1 3305 hlhhhhhhhhhH 3316 555444433330 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1201 (0.0736539); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.61 # Mc/sec: 16203.55 // Query: T316993_2 [L=3454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1037 (0.0635962); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.62 # Mc/sec: 15937.59 // Query: T316993_3 [L=3454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1094 (0.0670919); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.34s 00:00:01.93 Elapsed: 00:00:00.61 # Mc/sec: 16198.86 // Query: T072293_1 [L=2348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 11784.61 // Query: T072293_2 [L=2348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 11784.61 // Query: T072293_3 [L=2348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12213.14 // Query: T273854_1 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 754 (0.0462406); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2096.11 // Query: T273854_2 [L=380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2131.60 // Query: T273854_3 [L=380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2131.60 // Query: T203104_1 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 22 (0.0013492); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 2071.24 // Query: T203104_2 [L=361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1843 (0.113026); expected 326.1 (0.02) Passed bias filter: 348 (0.0213418); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 2151.58 // Query: T203104_3 [L=361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.50 # Mc/sec: 2065.52 // Query: T051495_1 [L=5982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.60 # Mc/sec: 28522.48 // Query: T051495_2 [L=5982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.57 # Mc/sec: 29506.01 // Query: T051495_3 [L=5981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.31s 00:00:01.63 Elapsed: 00:00:00.60 # Mc/sec: 28517.71 // Query: T351100_1 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-21 74.2 7.5 1.5e-20 72.6 4.6 2.7 2 Transposase_1 Transposase (partial DDE domain) 0.0028 17.3 0.4 0.0051 16.4 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.053 13.6 0.0 0.13 12.4 0.0 1.6 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.057 3.1e+02 25 38 .. 817 830 .. 813 832 .. 0.80 2 ! 72.6 4.6 2.8e-24 1.5e-20 14 79 .. 1002 1071 .. 981 1072 .. 0.86 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.057 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351100_1 817 EKLSKNAMLTIVWS 830 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 2.8e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351100_1 1002 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1071 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 9.5e-07 0.0051 55 143 .. 1042 1135 .. 976 1137 .. 0.75 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9.5e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351100_1 1042 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1135 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 2.4e-05 0.13 5 23 .. 1849 1867 .. 1846 1873 .. 0.86 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.4e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351100_1 1849 NLVCQVFPREYLANHNCGR 1867 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 9490.06 // Query: T351100_2 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 9023.34 // Query: T351100_3 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.037 13.8 0.1 0.08 12.7 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 4.9e-06 0.08 15 43 .. 1006 1038 .. 1002 1045 .. 0.80 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.9e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351100_3 1006 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1038 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 9485.13 // Query: T018928_1 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7390.48 // Query: T018928_2 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 7126.53 // Query: T018928_3 [L=1395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.6 7.5 5.8 7.1 6.5 5.8 1.4 1 Mito_fiss_reg Mitochondrial fission regulator 5.4 6.9 15.5 2 8.4 11.5 2.2 2 PRIMA1 Proline-rich membrane anchor 1 Domain annotation for each model (and alignments): >> Mito_fiss_reg Mitochondrial fission regulator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 5.8 0.00087 7.1 165 193 .. 526 556 .. 502 565 .. 0.50 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00087 Mito_fiss_reg 165 sssaspslp.ss.ppppppppppppespsvl 193 + + ++l+ s pppppppppppp+sp+ T018928_3 526 AAAGRSHLEmESrPPPPPPPPPPPPPSPPLT 556 2233333323224444444444434344333 PP >> PRIMA1 Proline-rich membrane anchor 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 11.5 0.00024 2 19 42 .. 533 556 .. 521 566 .. 0.77 2 ? -1.9 0.1 0.36 2.9e+03 9 34 .. 674 699 .. 668 701 .. 0.76 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00024 PRIMA1 19 eacqcrrypplpppppppppprll 42 + r++pp pppppppp+p l T018928_3 533 LEMESRPPPPPPPPPPPPPSPPLT 556 556789999999999999999875 PP == domain 2 score: -1.9 bits; conditional E-value: 0.36 PRIMA1 9 vaekvtescqeacqcrrypplppppp 34 +++ +t+ + ++ r++ p+p+p p T018928_3 674 ATAAATNAGAKSGRGRQPRPFPSPHP 699 56667777788889999999999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6880.79 // Query: T110821_1 [L=946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4920.63 // Query: T110821_2 [L=946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 4587.03 // Query: T110821_3 [L=946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 4920.63 // Query: T273783_1 [L=4507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.74 # Mc/sec: 17424.00 // Query: T273783_2 [L=4507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.74 # Mc/sec: 17424.00 // Query: T273783_3 [L=4507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.76 # Mc/sec: 16965.47 // Query: T257956_1 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 7995.53 // Query: T257956_2 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8281.08 // Query: T257956_3 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 7597.61 // Query: T126032_1 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.62 # Mc/sec: 7885.74 // Query: T126032_2 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 7521.78 // Query: T126032_3 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 6980.43 // Query: T201371_1 [L=4755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.82 # Mc/sec: 16589.33 // Query: T201371_2 [L=4754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.37s 00:00:01.84 Elapsed: 00:00:00.83 # Mc/sec: 16386.01 // Query: T201371_3 [L=4754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.36s 00:00:02.00 Elapsed: 00:00:00.81 # Mc/sec: 16790.60 // Query: T348654_1 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.71 # Mc/sec: 9622.06 // Query: T348654_2 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.88 # Mc/sec: 7763.25 // Query: T348654_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.63 # Mc/sec: 10843.91 // Query: T233836_1 [L=4950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1246 (0.0764136); expected 326.1 (0.02) Passed bias filter: 332 (0.0203606); expected 326.1 (0.02) Passed Vit filter: 173 (0.0106096); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.97u 0.49s 00:00:04.46 Elapsed: 00:00:01.15 # Mc/sec: 12207.85 // Query: T233836_2 [L=4950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1485 (0.0910708); expected 326.1 (0.02) Passed bias filter: 433 (0.0265546); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.55u 0.53s 00:00:06.08 Elapsed: 00:00:01.37 # Mc/sec: 10336.58 // Query: T233836_3 [L=4950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1463 (0.0897216); expected 326.1 (0.02) Passed bias filter: 458 (0.0280878); expected 326.1 (0.02) Passed Vit filter: 245 (0.0150251); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.67u 0.57s 00:00:05.24 Elapsed: 00:00:01.26 # Mc/sec: 11238.98 // Query: T137387_1 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.72 # Mc/sec: 6023.64 // Query: T137387_2 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.78 # Mc/sec: 5560.28 // Query: T137387_3 [L=1515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 6191.65 // Query: T289428_1 [L=1123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-06 25.9 0.0 8.5e-06 25.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 6.2e-05 22.8 1.6 0.00013 21.7 1.6 1.6 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.057 13.3 1.6 0.12 12.2 1.6 1.5 1 zf-CCHC_3 Zinc knuckle 1.5 8.4 10.9 0.43 10.2 4.2 2.5 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 6.2 6.7 6.6 12 5.8 6.6 1.4 1 Anti-TRAP Tryptophan RNA-binding attenuator protein inhibito Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 0.0 2.6e-09 8.5e-06 86 163 .. 117 195 .. 107 201 .. 0.85 Alignments for each domain: == domain 1 score: 25.3 bits; conditional E-value: 2.6e-09 Gag_p30 86 afpltrpdwdyetaegresl.klyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpe 163 a p + p+w+y++ + + l+ g++ aa + n k+ke +qgk+e+ a f+ l + r +t d e p+ T289428_1 117 AVPREDPQWNYQADSPSIAR*DYMVSCLVEGFKKAAYKAVNYDKLKETTQGKDENSAQFMAHLAATLRCFTALDLEGPG 195 678999999998766554334456689**********************************************998876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 1.6 4e-08 0.00013 1 18 [] 284 301 .. 284 301 .. 0.94 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 4e-08 SCTSSSSSSSSTTTTSTS CS zf-CCHC 1 rkCynCGepGHiardCpk 18 ++C++C + GH+a++Cp+ T289428_1 284 GTCFKCWKSGHWAKECPQ 301 58***************7 PP >> zf-CCHC_3 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 1.6 3.7e-05 0.12 4 22 .. 283 301 .. 281 309 .. 0.87 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 3.7e-05 zf-CCHC_3 4 saaCQkClkkGHwtYECkn 22 + +C kC k GHw+ EC++ T289428_1 283 QGTCFKCWKSGHWAKECPQ 301 678**************96 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 4.2 0.00013 0.43 1 18 [. 282 299 .. 282 300 .. 0.95 2 ? 1.6 0.5 0.065 2.1e+02 1 17 [. 305 320 .. 305 324 .. 0.85 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00013 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p g C +C k Hwa++C T289428_1 282 PQGTCFKCWKSGHWAKEC 299 6899************** PP == domain 2 score: 1.6 bits; conditional E-value: 0.065 ---B-TTT-SSBS-TTT CS zf-CCHC_5 1 ppglCpRCkkgkHward 17 pp Cp C g Hw++d T289428_1 305 PPKPCPICA-GPHWKSD 320 577799996.9****98 PP >> Anti-TRAP Tryptophan RNA-binding attenuator protein inhibitory protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.0038 12 12 41 .. 285 317 .. 282 320 .. 0.84 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0038 E-TTTTTTSEETTE.........E-TTTTTSSE CS Anti-TRAP 12 kCdaCngsGkiepeeprasl...eCPkCsGkgl 41 +C +C++sG+ + e p+ ++ +CP C G + T289428_1 285 TCFKCWKSGHWAKECPQPGIppkPCPICAGPHW 317 7*************7777764447******876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5841.29 // Query: T289428_2 [L=1123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 4524.95 // Query: T289428_3 [L=1123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-16 61.2 0.0 1.5e-16 60.7 0.0 1.2 1 RNase_H RNase H 0.00011 21.7 0.0 0.00016 21.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.7 0.0 1.9e-20 1.5e-16 3 137 .. 902 1041 .. 900 1046 .. 0.80 Alignments for each domain: == domain 1 score: 60.7 bits; conditional E-value: 1.9e-20 SEEEEEEEEEECT..TTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseq 95 +++++ DGs+ + +++++ag+ ++++ +++l++ t ++a L+A++ aL a ++ +vniytDSkY+++ +++ w +++ t+++ T289428_3 902 DHIWFIDGSSTRPnrHSPAKAGYaIVSST--PiIEATALPPSITSQQAKLIALTRALAlA--KGLCVNIYTDSKYAFHILHHHAVIWAERNF-LTMHG 994 5789*****99763455669***666655..52445778899***************977..99**************77776666766555.59999 PP SBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHH CS RNase_H 96 kpvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrl 137 + ++n++l+++l +++ +k+ + h+k H+ +++N aD++ T289428_3 995 SSIINASLIKTLLKATLlPKEAGVIHCKSHQKAsdpiAQDNAYADKV 1041 99***8888877665555************555468889******97 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 2e-08 0.00016 169 210 .. 202 243 .. 196 244 .. 0.94 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 2e-08 Gag_p30 169 alsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + fi+qsa+dirkklq+le ++ ++l++ + k+yn re T289428_3 202 NMHFITQSAPDIRKKLQKLESGPQTPQQELINLTFKLYNNRE 243 699************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 4867.75 // Query: T379041_1 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.5 9.5 3.3e-05 24.1 9.5 1.7 1 Harakiri Activator of apoptosis harakiri Domain annotation for each model (and alignments): >> Harakiri Activator of apoptosis harakiri # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 9.5 2e-09 3.3e-05 1 77 [. 442 517 .. 442 521 .. 0.69 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 2e-09 Harakiri 1 mcpcplhrgrgppavcacsdarlglrsaaaqltalrlkalgdelhrramrrrarsrd.plpallpalrarwpwlcaaa 77 m pcplhrg a+ ac ++rlglrsa+aqlt++ a +h+ a r a + l + p rw c aa T379041_1 442 MLPCPLHRGHSSLALYACLAGRLGLRSATAQLTTAPKGAA--PVHHVAAPRPASTVPtGLGCTRPHSWWRWRPGCLAA 517 88*******************************9876553..456655544443332244444555444454455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 2498.46 // Query: T379041_2 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 2671.81 // Query: T379041_3 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 28.7 0.9 2.3e-06 27.8 0.9 1.4 1 Harakiri Activator of apoptosis harakiri Domain annotation for each model (and alignments): >> Harakiri Activator of apoptosis harakiri # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.9 1.4e-10 2.3e-06 54 91 .. 483 518 .. 464 519 .. 0.74 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 1.4e-10 Harakiri 54 rsrd.plpallpalrarwpwlcaaaqvaalaawllgrrs 91 sr p p+ ++ wpwl aa q+ alaawllg +s T379041_3 483 ASRGsPTPSEHRTY---WPWLYAAPQLVALAAWLLGSQS 518 34445888888888...*******************876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 2493.69 // Query: T278150_1 [L=1668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 7230.10 // Query: T278150_2 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 6532.88 // Query: T278150_3 [L=1667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.64 # Mc/sec: 7451.57 // Query: T221987_1 [L=1892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 8591.57 // Query: T221987_2 [L=1892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 8457.33 // Query: T221987_3 [L=1891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 8074.37 // Query: T022494_1 [L=2991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 12401.08 // Query: T022494_2 [L=2991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 11721.57 // Query: T022494_3 [L=2990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 11717.65 // Query: T133993_1 [L=2733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 12028.69 // Query: T133993_2 [L=2733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.70 # Mc/sec: 11169.50 // Query: T133993_3 [L=2733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.64 # Mc/sec: 12216.64 // Query: T272951_1 [L=6301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.03u 0.43s 00:00:02.46 Elapsed: 00:00:00.86 # Mc/sec: 20960.57 // Query: T272951_2 [L=6300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.40s 00:00:02.31 Elapsed: 00:00:00.83 # Mc/sec: 21714.73 // Query: T272951_3 [L=6300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:00.82 # Mc/sec: 21979.55 // Query: T321832_1 [L=534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-27 95.8 0.1 2.5e-27 95.3 0.1 1.2 1 rve Integrase core domain 3.5e-10 38.9 1.4 5.5e-10 38.2 1.4 1.3 1 IN_DBD_C Integrase DNA binding domain ------ inclusion threshold ------ 0.052 13.2 0.0 0.1 12.3 0.0 1.4 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.3 0.1 4.5e-31 2.5e-27 3 118 .. 110 220 .. 109 221 .. 0.96 Alignments for each domain: == domain 1 score: 95.3 bits; conditional E-value: 4.5e-31 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 +p+elwq+Dvt+++ g+ ++++ +d+fs+li a+a++ e ++ vi+ l +a+ + p ++ +Dng +yts++f++f+ +++++s+ p++p T321832_1 110 EPNELWQTDVTHVP--EFGKLRHVHISVDTFSHLISAHALPGE-STRYVIKHLLLTFAFMWQ--PTKIKTDNGLAYTSSQFQQFCHTWNVQHSMGIPYNP 204 69************..55556**********************.**********9*******..9*********************************** PP rve 103 qdnGkvErfnrtlkde 118 q ++ vEr + tlk++ T321832_1 205 QGQATVERAHSTLKNM 220 **************87 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 1.4 1e-13 5.5e-10 2 43 .. 269 308 .. 268 309 .. 0.95 Alignments for each domain: == domain 1 score: 38.2 bits; conditional E-value: 1e-13 TCEEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEE CS IN_DBD_C 2 namvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvP 43 ++ v wkd++ +lW+ P+ +L++grG++cv s + w+P T321832_1 269 KPLVLWKDVNGNLWCSPNDLLTWGRGYACV--HTPSGPLWIP 308 57899*************************..99******** PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 1.9e-05 0.1 3 29 .. 194 220 .. 193 223 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.9e-05 rve_3 3 ielsyiapgkPqqNglvEsfngtlrde 29 +++s++ p++Pq ++ vE+ + tl++ T321832_1 194 VQHSMGIPYNPQGQATVERAHSTLKNM 220 89**********************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 2424.89 // Query: T321832_2 [L=534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 483 (0.029621); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 2424.89 // Query: T321832_3 [L=533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 2541.37 // Query: T028398_1 [L=3538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.77 # Mc/sec: 13144.96 // Query: T028398_2 [L=3537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.31s 00:00:01.65 Elapsed: 00:00:00.79 # Mc/sec: 12808.55 // Query: T028398_3 [L=3537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.76 # Mc/sec: 13314.15 // Query: T210841_1 [L=2348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 10834.24 // Query: T210841_2 [L=2347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.30s 00:00:01.38 Elapsed: 00:00:00.63 # Mc/sec: 10657.73 // Query: T210841_3 [L=2347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 11779.59 // Query: T279630_1 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-16 59.0 0.4 2.9e-09 36.2 0.0 2.3 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.0 1.8e-13 2.9e-09 170 209 .. 799 838 .. 798 847 .. 0.90 2 ! 20.7 0.1 8.8e-09 0.00014 290 319 .. 917 946 .. 901 949 .. 0.89 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 1.8e-13 HHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHH CS Transposase_22 170 ekrkkileqslqviqdtvkrPnlrliGvdesedeqlkkle 209 +kr+k++eqslq i+++vkrP lrliGv+es+ e+ + + T279630_1 799 KKRMKRNEQSLQGIWNYVKRPHLRLIGVPESDGENASNWK 838 699******************************9987655 PP == domain 2 score: 20.7 bits; conditional E-value: 8.8e-09 HHHHHHHHHHHHHHHHH.HTT---EEETTTE CS Transposase_22 290 etlkarrewtdviqilk.ekkfqPrllyPak 319 tl+arrew++++++lk +fq r++yPak T279630_1 917 RTLQARREWGPILNVLK*K-NFQHRISYPAK 946 69**************555.8*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 7098.95 // Query: T279630_2 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-08 33.5 6.2 0.0014 17.4 0.0 3.2 3 Transposase_22 L1 transposable element 7.3e-05 22.3 0.3 0.00012 21.5 0.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.0 0.4 3.1e-05 0.26 6 54 .. 663 707 .. 659 714 .. 0.87 2 ! 7.1 0.8 0.00023 1.9 145 168 .. 773 796 .. 773 800 .. 0.93 3 ! 17.4 0.0 1.7e-07 0.0014 270 293 .. 897 920 .. 891 938 .. 0.87 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 3.1e-05 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk 54 + +k +ns+ +++s+P+k+++s P e+++ + f+el + ++++ T279630_2 663 KSQHKKAENSENQNASSPPKDHNSLPGR--EQNWIE--FDELIEVGFRR 707 466899********************99..999985..99***999998 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00023 HHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevke 168 id+ eer+s +ed+++ei+ e k T279630_2 773 IDQAEERISETEDQLNEIKYEDKI 796 799****************99886 PP == domain 3 score: 17.4 bits; conditional E-value: 1.7e-07 HHS-EEETTEEEEEEE---HHHHH CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlk 293 +kG++t kGkP+rltadlsae k T279630_2 897 QKGQLTNKGKPMRLTADLSAEPYK 920 79*******************876 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.3 1.5e-08 0.00012 3 36 .. 1545 1576 .. 1542 1579 .. 0.88 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 1.5e-08 -TT.S-EEE......-THHHHCTB--........ CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlek 36 Kk +++Rpisl+++d+k+lnk++a+r++++++k T279630_2 1545 KK--ENFRPISLMNIDVKILNKILANRIQQHIKK 1576 34..69*************************854 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 520 (0.0318901); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 7764.47 // Query: T279630_3 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-32 112.0 7.1 2.6e-31 108.7 7.1 2.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.7 7.1 1.6e-35 2.6e-31 214 366 .. 842 994 .. 836 996 .. 0.87 Alignments for each domain: == domain 1 score: 108.7 bits; conditional E-value: 1.6e-35 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE.....EEEEE---HHHHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP.....irltadlsaetlkarrewtdviq 303 +ii+e fPnl ++an++iq i+rtP+r++ +ra++rhi +r+tkv++k+ +++a++ k + kG P i l s + +r ++ + T279630_3 842 NIIQEIFPNLGRQANIQIQKIQRTPQRYSLRRATPRHIFIRFTKVEMKENMFRAAK-KVSLPTKGSP*d*qqISLQNPTS----Q-KRVGANTQR 930 59****************************************************97.677888**999994455544444....3.344445555 PP H.HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXX CS Transposase_22 304 i.lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleq 366 +ke q ++ + s+i++Gei+ dk++lrd+++trP+l++llke + erk+ +q+ ++ T279630_3 931 S*IKEFSTQNFIS--SEKSFISEGEIRSITDKQMLRDFVTTRPTLQELLKEalNIERKNWHQPQQK 994 5888988888887..678*********************************9999****9999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 7307.74 // Query: T099980_1 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.64 # Mc/sec: 8381.34 // Query: T099980_2 [L=1874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-14 52.2 1.2 1.6e-13 51.2 1.2 1.5 1 KIAA1430 KIAA1430 homologue Domain annotation for each model (and alignments): >> KIAA1430 KIAA1430 homologue # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.2 1.2 9.6e-18 1.6e-13 1 68 [. 394 461 .. 394 467 .. 0.89 Alignments for each domain: == domain 1 score: 51.2 bits; conditional E-value: 9.6e-18 KIAA1430 1 HlnklknikssidnkapkkpshlskkkkklqleeerlaeiereNqiLleklseimrrkgkkknassqs 68 H++k++++++ +d++ap +++hl++k k+l+leeerl+ ier+N++Llek +mr++g+++++++++ T099980_2 394 HRRKVQSAQPLVDTRAPLTFRHLHLKLKRLKLEEERLSVIERDNRLLLEKVASVMRTRGQTDSKNNSK 461 9*********************************************************9744433333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.24s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 8647.09 // Query: T099980_3 [L=1874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 7884.11 // Query: T219935_1 [L=1677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1234 (0.0756777); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.41s 00:00:01.53 Elapsed: 00:00:00.73 # Mc/sec: 6572.07 // Query: T219935_2 [L=1677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 787 (0.0482644); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 7055.31 // Query: T219935_3 [L=1676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 704 (0.0431743); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.76 # Mc/sec: 6308.88 // Query: T226941_1 [L=14751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.93u 0.51s 00:00:04.44 Elapsed: 00:00:01.21 # Mc/sec: 34876.12 // Query: T226941_2 [L=14750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.77u 0.43s 00:00:04.20 Elapsed: 00:00:01.07 # Mc/sec: 39436.68 // Query: T226941_3 [L=14750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.03u 0.53s 00:00:04.56 Elapsed: 00:00:01.01 # Mc/sec: 41779.45 // Query: T229249_1 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 453 (0.0277812); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.84 # Mc/sec: 8054.60 // Query: T229249_2 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 15.7 0.3 0.028 14.4 0.3 1.6 1 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.3 1.7e-06 0.028 4 29 .. 867 892 .. 866 895 .. 0.92 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.7e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229249_2 867 VWGASCPAPHNPCRLQLELCGPCQKR 892 5**********************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 9805.60 // Query: T229249_3 [L=2365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.76 # Mc/sec: 8902.45 // Query: T164715_1 [L=4861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.38s 00:00:02.16 Elapsed: 00:00:00.88 # Mc/sec: 15802.83 // Query: T164715_2 [L=4860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.30s 00:00:01.95 Elapsed: 00:00:00.72 # Mc/sec: 19310.60 // Query: T164715_3 [L=4860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.33s 00:00:02.02 Elapsed: 00:00:00.82 # Mc/sec: 16955.65 // Query: T316476_1 [L=3814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.80 # Mc/sec: 13639.01 // Query: T316476_2 [L=3813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.76 # Mc/sec: 14353.09 // Query: T316476_3 [L=3813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.39s 00:00:01.74 Elapsed: 00:00:00.70 # Mc/sec: 15583.35 // Query: T099736_1 [L=2867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14646.43 // Query: T099736_2 [L=2866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.59 # Mc/sec: 13896.85 // Query: T099736_3 [L=2866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1178 (0.0722433); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.59 # Mc/sec: 13896.85 // Query: T110950_1 [L=178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45 # Mc/sec: 1131.62 // Query: T110950_2 [L=177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.45 # Mc/sec: 1125.26 // Query: T110950_3 [L=177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.44 # Mc/sec: 1150.83 // Query: T146029_1 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 7.9 6.2 10 6.3 2.4 2.8 2 zf-AN1 AN1-like Zinc finger Domain annotation for each model (and alignments): >> zf-AN1 AN1-like Zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.1 0.012 2e+02 19 34 .. 1037 1052 .. 1036 1055 .. 0.93 2 ? 6.3 2.4 0.00062 10 1 28 [. 1663 1688 .. 1663 1691 .. 0.95 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.012 zf-AN1 19 CgkvFClkHrlpedHd 34 C+ + C + r pe+H+ T146029_1 1037 CRLDLCNDARSPEQHS 1052 99*************6 PP == domain 2 score: 6.3 bits; conditional E-value: 0.00062 zf-AN1 1 CsfksCkkkdflpfkCryCgkvFClkHr 28 Csf C++ +f++ C + +FC +H T146029_1 1663 CSFLPCSQVIFTMLSCL--DTTFCHTHY 1688 9999*************..********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.46 # Mc/sec: 10802.74 // Query: T146029_2 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 10352.63 // Query: T146029_3 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 9556.27 // Query: T169317_1 [L=2179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 12467.50 // Query: T169317_2 [L=2179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 12223.04 // Query: T169317_3 [L=2179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 11543.98 // Query: T342318_1 [L=1767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.22s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 9537.90 // Query: T342318_2 [L=1767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 10755.50 // Query: T342318_3 [L=1767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.48 # Mc/sec: 10531.43 // Query: T138070_1 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 4583.29 // Query: T138070_2 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 4577.33 // Query: T138070_3 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.46 # Mc/sec: 4776.34 // Query: T297828_1 [L=7173] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7173 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.29s 00:00:01.80 Elapsed: 00:00:00.57 # Mc/sec: 35380.58 // Query: T297828_2 [L=7172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.35s 00:00:01.86 Elapsed: 00:00:00.63 # Mc/sec: 32568.05 // Query: T297828_3 [L=7172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00037 19.9 0.0 0.00062 19.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0098 15.3 0.0 0.02 14.3 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.0 7.6e-08 0.00062 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 7.6e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297828_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 2.5e-06 0.02 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.5e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297828_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.62 # Mc/sec: 33093.34 // Query: T135868_1 [L=2334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.53 # Mc/sec: 12598.45 // Query: T135868_2 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12135.12 // Query: T135868_3 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 12135.12 // Query: T159074_1 [L=1591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 8753.04 // Query: T159074_2 [L=1591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 8924.67 // Query: T159074_3 [L=1591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 8753.04 // Query: T129273_1 [L=330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00057 19.4 12.6 0.0072 15.9 12.6 2.1 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 12.6 4.4e-07 0.0072 1 38 [. 45 82 .. 42 82 .. 0.87 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.4e-07 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeGfqlGlelGqilGv 38 G reG +eG+++g eG+ eG++eG + G + G+ +G+ T129273_1 45 GRREGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGK 82 77999999999999999999999999999999988875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 1888.15 // Query: T129273_2 [L=330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.6 11.8 0.084 12.5 11.8 1.9 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 11.8 5.1e-06 0.084 3 30 .. 52 75 .. 43 80 .. 0.41 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5.1e-06 Yae1_N 3 reGlaeGkeqglqeGfdeGyqeGfqlGl 30 +eG +eG+++g eG+ eG++eG T129273_2 52 KEGRKEGRKEGRKEGRKEGRKEG----R 75 33333333333333333333333....2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1926.68 // Query: T129273_3 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00094 18.7 12.3 0.018 14.6 12.3 2.3 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 12.3 1.1e-06 0.018 4 38 .. 46 80 .. 43 82 .. 0.57 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.1e-06 Yae1_N 4 eGlaeGkeqglqeGfdeGyqeGfqlGlelGqilGv 38 eG +eG+++g eG+ eG++eG + G + G+ +G+ T129273_3 46 EGRKEGRKEGRKEGRKEGRKEGRKEGRKEGRKEGR 80 55556666666666666666665555555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 1651.25 // Query: T055761_1 [L=1712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-71 239.8 2.3 5.1e-71 239.3 2.3 1.1 1 Transposase_22 L1 transposable element 1e-09 38.5 0.0 1.7e-09 37.7 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 3.6e-07 29.9 0.3 7.4e-07 28.9 0.3 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 239.3 2.3 9.4e-75 5.1e-71 232 368 .] 1265 1403 .. 1252 1403 .. 0.97 Alignments for each domain: == domain 1 score: 239.3 bits; conditional E-value: 9.4e-75 EEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEES CS Transposase_22 232 qeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiii 324 ei+rtP+r++ +ra++rhiivr+tkv++++k+l+a+rekGrvt kGkPirltadlsaetl+arrew+++++ilkek+fqPr++yPak s+i+ T055761_1 1265 SEIQRTPQRHSLRRATPRHIIVRFTKVEMQEKMLRAAREKGRVTHKGKPIRLTADLSAETLQARREWGPLFNILKEKNFQPRISYPAKRSFIS 1357 69******************************************************************************************* PP SSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 325 dGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 +Geik f dk++lrd++ trPal++llke ++er++ yq+l++++ T055761_1 1358 EGEIKSFTDKQMLRDFVITRPALQELLKEalNMERNNWYQPLQKHA 1403 *******************************************996 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.0 3.2e-13 1.7e-09 1 113 [] 1438 1657 .. 1438 1657 .. 0.86 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 3.2e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T055761_1 1438 LTLNVNG----LNAPIKRYRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkirrdkeghyimv 1527 699****....77778889******************99988877766668866677888899999******99997667888999******** PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T055761_1 1528 kgsiqqeelttlniyapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrstrqkvnkdiqelnsalyqadlidiyrtlhpksteytff 1621 ************************************************9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T055761_1 1622 laprctysKIDHIVGSKALLSKCKRTEIITNClSDH 1657 9998888888****9985554444444443337888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.3 1.4e-10 7.4e-07 3 118 .. 1538 1660 .. 1536 1661 .. 0.79 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 1.4e-10 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng.. 87 ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l + +l + ++k++ tf + T055761_1 1538 TLNIYAPNTG-APRFIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDIQELNSALYQADLIDIyrtLHPKSTeYTFFLAPRct 1627 5789999998.788888888888888886.8***************9888779999999999999999985455433333335554333356 PP Exo_endo_phos_2 88 ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH +i T055761_1 1628 YSKIDHIVGSKALLSKckRTEIITNCLSDHTAI 1660 8***************98666779******998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 7202.56 // Query: T055761_2 [L=1712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-53 181.4 16.0 5.8e-53 179.9 16.0 1.6 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.012 16.0 4.1 0.024 15.1 4.1 1.4 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.013 15.5 0.8 0.025 14.7 0.8 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.088 12.5 2.7 0.14 11.8 2.7 1.3 1 IncA IncA protein 0.18 11.6 3.9 0.15 11.9 0.4 2.2 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 179.9 16.0 1.8e-56 5.8e-53 2 234 .. 1066 1267 .. 1064 1274 .. 0.91 Alignments for each domain: == domain 1 score: 179.9 bits; conditional E-value: 1.8e-56 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiike 90 G+ + rk +nsk +++s+P+ke sssP e+++ ++df++lr+e+++++ +++elke++ +++ke + +k ++e + i e T055761_2 1066 GRNQ---SRKAENSKHQNASSPPKECSSSPGM--EQSWTENDFDKLREEGFRRSviiNFSELKEDVPTHCKETKnLEKRLDEWLTRINSI--E 1151 5555...8***********************9..*******************977779*************987888888865554442..1 PP ..............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 91 kqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqvi 183 + ++l+elkt ++el + + s+ssr d++ee vs +e++++e++re k+rekr+k++eqs q+i T055761_2 1152 ----------KTLNDLMELKTMARELSDACT------------------SFSSRFDQMEEGVSVIENQMNEMKREEKFREKRVKRNEQSHQEI 1216 ..........22348***************9..................9******************************************* PP HHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE CS Transposase_22 184 qdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei 234 +d+vkrPnl liGv+es+ e+++klen+ ++ii+enfPnl+++an++iq T055761_2 1217 WDYVKRPNLHLIGVPESDRENGTKLENTPQDIIQENFPNLARQANIQIQKY 1267 *************************************************74 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 4.1 7.2e-06 0.024 3 95 .. 1119 1216 .. 1118 1219 .. 0.83 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 7.2e-06 Syntaxin-6_N 3 FfevkeeV...qkslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevr 92 F e ke+V +k+ ++le+ +++w +++ + +++ + el+ +eL a+ s + +++ee v+++e++ +++k +ek ++r + e+ T055761_2 1119 FSELKEDVpthCKETKNLEKRLDEWlTRINSIEKTlNDLMELKTMARELSDACTSFSSRFDQMEEGVSVIENQMNEMKREEKFREKRVKRNEQSH 1213 56667777444566777788888886688888888889**********************************99999999999999888777777 PP Syntaxin-6_N 93 eev 95 +e+ T055761_2 1214 QEI 1216 776 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.8 7.7e-06 0.025 9 100 .. 1101 1195 .. 1097 1198 .. 0.90 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 7.7e-06 H-HHHHHHHHCCCT...CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRg...edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +++++++e +R +++++ +++ ++ ++l+++l+e ++ N++ k+ +++ k a el + + + +++++e+ ++ +e++++++ T055761_2 1101 NDFDKLREEGFRRSviiNFSELKEDVPTHCKETKNLEKRLDEWLTRINSIEKTLNDLMELKTMARELSDACTSFSSRFDQMEEGVSVIENQMNEM 1195 5677777777777777778888888888899*************************************************************986 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 2.7 4.3e-05 0.14 110 188 .. 1118 1200 .. 1065 1202 .. 0.90 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 4.3e-05 IncA 110 elkdleedleslqeelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqrlle 188 +++l+ed +++e k +e+rl+++ +i +++k + +l + ++l +++ + s+ +++ e + ++++++e +r + T055761_2 1118 NFSELKEDVPTHCKETKNLEKRLDEWLTRINSIEKTLNDLMelktMARELSDACTSFSSRFDQMEEGVSVIENQMNEMKREEK 1200 5789*************************************9999999999999999********************999765 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.4 4.6e-05 0.15 23 48 .. 1134 1159 .. 1132 1162 .. 0.91 2 ? 0.5 0.3 0.16 5.3e+02 27 46 .. 1176 1195 .. 1160 1199 .. 0.60 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4.6e-05 HSBP1 23 dqilsriDdMssriDdLEksiadlmt 48 +++ +r+D+ +ri+++Ek+++dlm+ T055761_2 1134 KNLEKRLDEWLTRINSIEKTLNDLME 1159 56779********************7 PP == domain 2 score: 0.5 bits; conditional E-value: 0.16 HSBP1 27 sriDdMssriDdLEksiadl 46 sr D+M++ + +E++++++ T055761_2 1176 SRFDQMEEGVSVIENQMNEM 1195 45566665555555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 849 (0.0520667); expected 326.1 (0.02) Passed bias filter: 345 (0.0211579); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.74 # Mc/sec: 6618.57 // Query: T055761_3 [L=1711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 8296.41 // Query: T203335_1 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 6397.86 // Query: T203335_2 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.67 # Mc/sec: 5251.97 // Query: T203335_3 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-104 348.8 15.3 5.7e-104 347.7 15.3 1.5 1 Transposase_22 L1 transposable element 1.2e-33 116.4 0.2 2.3e-33 115.4 0.2 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly ------ inclusion threshold ------ 0.01 15.7 4.1 0.47 10.3 0.8 2.4 2 DUF1664 Protein of unknown function (DUF1664) 0.019 14.7 2.0 0.046 13.5 2.0 1.6 1 Sec34 Sec34-like family 0.034 14.5 5.6 0.095 13.1 5.6 1.7 1 Spectrin Spectrin repeat 0.041 14.0 13.1 0.019 15.2 8.6 2.3 2 zf-C4H2 Zinc finger-containing protein 0.11 12.6 4.4 0.41 10.8 4.4 2.0 1 KLRAQ Predicted coiled-coil domain-containing prote 0.16 9.8 2.5 0.29 8.9 2.5 1.3 1 Prominin Prominin 0.42 11.1 9.5 0.079 13.4 5.2 2.0 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 10.6 6.8 0.14 12.2 2.2 2.6 2 Med2 Mediator complex subunit 2 5.6 7.4 8.0 1.1 9.6 2.6 2.6 3 DUF16 Protein of unknown function DUF16 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 347.7 15.3 3.8e-107 5.7e-104 32 307 .. 382 626 .. 368 631 .. 0.96 Alignments for each domain: == domain 1 score: 347.7 bits; conditional E-value: 3.8e-107 XX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX..................XXXXXXXXXXXXXX CS Transposase_22 32 atteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee......ntekqlkiikekqentskqvmemnkellelktkvdelkk 118 at e++++++df+elr+e++ + ++y+el e+i++k+ke+e ++k++ee ntek+lk el+elktk++el++ T203335_3 382 AT--EQSWMENDFDELREEGF-R*SNYSELWEDIQTKGKEVEkFEKNLEEcitritNTEKCLK------------------ELMELKTKARELRE 455 44..9***************9.7779************************8888888888888..................9************* PP XXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHH CS Transposase_22 119 eqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkkleniln 213 e++ sl+sr+d+lee vsa+ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrliGv+es+ e++ klen+l+ T203335_3 456 ECR------------------SLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGSKLENTLQ 532 ***..................************************************************************************** PP HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH.HHHHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl.karrewtdviqilke 307 +ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhiivr+tkv++k+k+l+a+rekGr+tlkGkPirltadlsaetl rrew+++++ilk T203335_3 533 DIIQENFPNLARQANVQIQEIRRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRITLKGKPIRLTADLSAETL*A-RREWGPIFNILKR 626 *****************************************************************************9555.9**********95 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 115.4 0.2 1.6e-36 2.3e-33 6 158 .. 846 1002 .. 837 1012 .. 0.95 Alignments for each domain: == domain 1 score: 115.4 bits; conditional E-value: 1.6e-36 .S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 ++++Rpisl+++d k+lnk++a++++++++kl++++q+gf pg + + ++ +++++++++k k+++++++D +kaFd+++ ++ l++l++++++ T203335_3 846 KENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRAKDKNHMIVSVDAEKAFDKIQQPFMLKTLNKLGIDG 943 369**************************************************999****9************************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 + ++i+++ ++++++ +ng++ e ++ k+g++qG++l Pllfn++ + l r +r++ T203335_3 944 TYFKIIRAISDKPTANIILNGQKLEAFPLKTGTRQGCPLLPLLFNIVSEVLARAIRQEK 1002 **********************99********************************975 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.8 0.00032 0.47 55 120 .. 417 481 .. 405 485 .. 0.56 2 ? 5.9 0.1 0.0074 11 55 113 .. 676 733 .. 672 747 .. 0.86 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00032 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 +++++ ++L++ i r+ ++ +++ + e+k + e+re+ +++++ ++++e v+ +e ++e+ T203335_3 417 KEVEKFEKNLEECITRITNT-EKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEM 481 45555555555555555443.444444445555566666666666666666666666666666655 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0074 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegL 113 +++++ + + +ri+++d+ l ++ k k++++++++d +i +d +++++++++ T203335_3 676 KKINESRSWFFERINKIDRPLARLIKK-KREKNQIDTIKNDKGDITTDPTEIQTTIREY 733 6789999999***********999875.55699********************999875 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 2.0 3.1e-05 0.046 3 59 .. 420 476 .. 418 486 .. 0.88 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.1e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrlee 59 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + +e+ T203335_3 420 EKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMED 476 78999*******************************************887666665 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 5.6 6.4e-05 0.095 2 94 .. 418 508 .. 417 511 .. 0.94 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 6.4e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++++l ++++ l+ ++ +e+v a ++ +++ eg++ +++i+ + l+e W+ +k+ T203335_3 418 EVEKFEKNLEECITRITNTEKCL--KELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 508 679********************..7777899999*****************************************************99875 PP >> zf-C4H2 Zinc finger-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.2 8.6 1.2e-05 0.019 4 159 .. 411 566 .. 409 585 .. 0.77 2 ? -0.1 0.1 0.58 8.6e+02 84 118 .. 718 752 .. 673 824 .. 0.52 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 1.2e-05 zf-C4H2 4 eirektleleklknklakevealekeekcleey...kkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeeinelr 100 +i++k +e+ek +++l + + ++++ekcl+e k + +L++E ++ ++++ ++a+E+ ++e + e + + +++k+ + ++++ + + + T203335_3 411 DIQTKGKEVEKFEKNLEECITRITNTEKCLKELmelKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRP- 509 7999999*********************99876111567789999999999999******************************999999999888654. PP zf-C4H2 101 selglekledleeeeeellkeeifekkesstapapplpptsllsklsqapsapstatas 159 +l l +++ + e+++ l++++ + +++ p+ + + + ++++++p++ s+ a+ T203335_3 510 -NLRLIGVPESDGENGSKLENTL-QDIIQENFPNLARQANVQIQEIRRTPQRYSSRRAT 566 .4666666777777777777766.54444455554445556666677777765544444 PP == domain 2 score: -0.1 bits; conditional E-value: 0.58 zf-C4H2 84 klyeeykklkeeinelrselglekledleeeeeel 118 ++++ ++++++i e ++l +kle+lee ++ l T203335_3 718 DITTDPTEIQTTIREYYKHLYTNKLENLEEMDKFL 752 22233333333333333333333333333333222 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 4.4 0.00027 0.41 31 89 .. 439 496 .. 406 504 .. 0.75 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00027 KLRAQ 31 lkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 +el e +++ r ++E sL r +qLe v+++ +e++e +++ +k ++k ++++ T203335_3 439 CLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKRE-GKFREKRIKRNE 496 33445555566788889************************98755.665533333332 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 2.5 0.0002 0.29 229 352 .. 425 556 .. 404 575 .. 0.74 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0002 Prominin 229 tlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCskilssleiekldtskcl.........dqlp 318 +le+ + +++ e+ l++l e k++ +++++ +Lr+ +qL++ ++++ +++n++ + + + e+ k ++++ +e++d+ k + + T203335_3 425 NLEEC-ITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREgKFR-EKRIKRNEQSLQEIWDYVKRPnlrligvpeSDGE 522 44444.55566677778888888888888888888888888888888888888888888886666.4444444444455788776655444333355558 PP Prominin 319 nvdevlealeevletnlssivkeglarlneipek 352 n +++ ++l++++++n+ +++++++ +++ei+++ T203335_3 523 NGSKLENTLQDIIQENFPNLARQANVQIQEIRRT 556 899999*************************987 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 5.2 5.3e-05 0.079 14 95 .. 419 506 .. 405 508 .. 0.66 2 ? -3.2 0.1 7.8 1.2e+04 46 65 .. 712 731 .. 687 752 .. 0.55 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.3e-05 Syntaxin-6_N 14 lnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreev 95 ++k e+ +++ +++ ++++ ++ el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + v T203335_3 419 VEKFEKNLEECiTRITNTEKClKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDemneMKREGKFREKRIKRNEQSLQEIWDYV 506 33333333333333333333345899***************************99987332222447778888888888887776655 PP == domain 2 score: -3.2 bits; conditional E-value: 7.8 Syntaxin-6_N 46 LrkalrsiewdledLeetvr 65 +++ ++i +d +++ t+r T203335_3 712 IKNDKGDITTDPTEIQTTIR 731 33333444444444444443 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 2.2 9.7e-05 0.14 48 95 .. 416 463 .. 406 469 .. 0.86 2 ? -2.9 0.0 4.7 6.9e+03 4 15 .. 525 536 .. 523 552 .. 0.81 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 9.7e-05 Med2 48 kekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 ++++kF++ L + ++++++++++++l+e k++ +e++e ++ r r T203335_3 416 GKEVEKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSR 463 5789*******************************9999976666655 PP == domain 2 score: -2.9 bits; conditional E-value: 4.7 Med2 4 nkLtqclddiLk 15 +kL+++l+di++ T203335_3 525 SKLENTLQDIIQ 536 699999999987 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.2 0.8 1.2e+03 67 99 .. 408 440 .. 404 449 .. 0.51 2 ? 9.6 2.6 0.00077 1.1 32 99 .. 446 513 .. 414 516 .. 0.79 3 ? -3.0 0.2 6.4 9.4e+03 66 72 .. 714 720 .. 675 754 .. 0.43 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.8 HHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 67 lkveqkaqgeelnkvdetleliletLqkinkRl 99 l ++++++g+e++k ++ le + +++++k l T203335_3 408 LWEDIQTKGKEVEKFEKNLEECITRITNTEKCL 440 444455555555555555555444444444443 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00077 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 k++ +++ ++ ++l + ++le+ v++ +++++e+k e k +++++++ +++l+ i + +++ n Rl T203335_3 446 LKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRL 513 3455566667777999****************************************999888877776 PP == domain 3 score: -3.0 bits; conditional E-value: 6.4 HHHHHHH CS DUF16 66 elkveqk 72 + k ++ T203335_3 714 NDKGDIT 720 2222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1115 (0.0683797); expected 326.1 (0.02) Passed bias filter: 443 (0.0271679); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:00.67 # Mc/sec: 5247.70 // Query: T293916_1 [L=1141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 5021.86 // Query: T293916_2 [L=1140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-09 37.2 4.1 2.1e-09 36.6 4.1 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.6 4.1 1.3e-13 2.1e-09 14 74 .. 994 1052 .. 981 1061 .. 0.87 Alignments for each domain: == domain 1 score: 36.6 bits; conditional E-value: 1.3e-13 XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS Transposase_22 14 nsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakeleal 74 nsk +++s+P+ke sssPa e++++++d++elr+e++ + +++++lke+++++ ke++ l T293916_2 994 NSKNQSTSPPPKECSSSPAM--EQSWMEDDYDELREEGF-R*SNFSKLKEEVQTHHKEVKNL 1052 7*******************..*****************.5557899************944 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 5435.58 // Query: T293916_3 [L=1140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-18 66.8 2.8 1.9e-18 66.3 2.8 1.2 1 Transposase_22 L1 transposable element 1.2e-15 57.7 0.1 1.9e-15 57.0 0.1 1.2 1 DUF1669 Protein of unknown function (DUF1669) ------ inclusion threshold ------ 0.17 12.2 2.1 0.31 11.4 2.1 1.3 1 DUF16 Protein of unknown function DUF16 3 8.0 6.2 7.7 6.7 0.8 2.3 2 XhlA Haemolysin XhlA Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.3 2.8 4.8e-22 1.9e-18 137 190 .. 1086 1139 .. 1041 1140 .] 0.89 Alignments for each domain: == domain 1 score: 66.3 bits; conditional E-value: 4.8e-22 ...XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT CS Transposase_22 137 idaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrP 190 i s+ssr d+leervs +ed+++e++re k+rekr+k+++qslq+i+d+vkrP T293916_3 1086 ICKSFSSRFDQLEERVSLMEDQMNEMKREEKFREKRIKRNKQSLQEIWDYVKRP 1139 6789*************************************************9 PP >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.0 0.1 4.7e-19 1.9e-15 140 198 .. 319 377 .. 314 380 .. 0.95 Alignments for each domain: == domain 1 score: 57.0 bits; conditional E-value: 4.7e-19 DUF1669 140 viavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlr 198 v avvmd+ft+vdifkdll+a++krk +yi++d +++k+ l+mce+++++ +hlk l+ T293916_3 319 VPAVVMDMFTHVDIFKDLLDAGFKRKADLYIIVDGSKVKYVLHMCEQTRMHLGHLKSLK 377 779****************************************************9985 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 2.1 7.5e-05 0.31 23 90 .. 1050 1134 .. 1042 1138 .. 0.86 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 7.5e-05 HHHHHB-..BHHHHHHHHHHHH....................HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS DUF16 23 kqlnefkdsnkqrLkkieakvd.................klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelile 90 k lne d+ +r++++e+ ++ + ++++le+ v+ +++++e+k e k +++++++ +++l+ i + T293916_3 1050 KTLNEDSDEWLTRITNVEKALNdlmelktma*elrdickSFSSRFDQLEERVSLMEDQMNEMKREEKFREKRIKRNKQSLQEIWD 1134 4566666667788888888888999999999999999988899*************************************98865 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.8 0.0019 7.7 12 46 .. 1041 1075 .. 1039 1078 .. 0.88 2 ? 4.1 0.5 0.012 48 7 44 .. 1095 1132 .. 1089 1137 .. 0.75 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0019 XhlA 12 kldnleervdkleekaaeaeekiknleedlkkies 46 k + + +++++l+e+++e +++i n+e+ l+++ + T293916_3 1041 KCKPITKKLKTLNEDSDEWLTRITNVEKALNDLME 1075 566678899**********************9965 PP == domain 2 score: 4.1 bits; conditional E-value: 0.012 XhlA 7 erietkldnleervdkleekaaeaeekiknleedlkki 44 ++e+++ +e+++++ ++ + e++ik + l +i T293916_3 1095 DQLEERVSLMEDQMNEMKREEKFREKRIKRNKQSLQEI 1132 56788888888888888888888888888888888877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 582 (0.0356924); expected 326.1 (0.02) Passed bias filter: 271 (0.0166196); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 4867.68 // Query: T293989_1 [L=2457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.67 # Mc/sec: 10491.13 // Query: T293989_2 [L=2456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.73 # Mc/sec: 9624.93 // Query: T293989_3 [L=2456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 9896.05 // Query: T228191_1 [L=10061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.88u 0.45s 00:00:03.33 Elapsed: 00:00:00.91 # Mc/sec: 31629.46 // Query: T228191_2 [L=10061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-07 30.9 0.2 2.1e-07 30.0 0.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.0 0.2 1.3e-11 2.1e-07 305 357 .. 5170 5222 .. 5169 5227 .. 0.91 Alignments for each domain: == domain 1 score: 30.0 bits; conditional E-value: 1.3e-11 HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTTT-SS CS Transposase_22 305 lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllkekner 357 lke+++q r lyPak+s+ +Ge+ f d +klr++ + +lk+ lke + T228191_2 5170 LKENNYQFRSLYPAKISFRDEGEMETFSDEEKLRKFAASTYTLKECLKEFFQI 5222 9************************************************5544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.86u 0.44s 00:00:03.30 Elapsed: 00:00:00.86 # Mc/sec: 33468.38 // Query: T228191_3 [L=10060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.78u 0.42s 00:00:03.20 Elapsed: 00:00:00.98 # Mc/sec: 29367.30 // Query: T193430_1 [L=6544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.17u 0.47s 00:00:02.63 Elapsed: 00:00:00.96 # Mc/sec: 19501.32 // Query: T193430_2 [L=6544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.40s 00:00:02.48 Elapsed: 00:00:00.76 # Mc/sec: 24633.25 // Query: T193430_3 [L=6543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.39s 00:00:02.39 Elapsed: 00:00:00.85 # Mc/sec: 22021.66 // Query: T222364_1 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 534 (0.0327487); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 10585.07 // Query: T222364_2 [L=1960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 8369.00 // Query: T222364_3 [L=1960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 10194.96 // Query: T248717_1 [L=2810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 11821.96 // Query: T248717_2 [L=2810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 11012.24 // Query: T248717_3 [L=2810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.78 # Mc/sec: 10306.32 // Query: T258930_1 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 88 (0.00539679); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.74 # Mc/sec: 3378.87 // Query: T258930_2 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.70 # Mc/sec: 3571.95 // Query: T258930_3 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 3731.89 // Query: T089749_1 [L=2912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1043 (0.0639642); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.27u 0.44s 00:00:02.71 Elapsed: 00:00:00.89 # Mc/sec: 9360.38 // Query: T089749_2 [L=2911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1285 (0.0788053); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 110 (0.00674598); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.43s 00:00:02.63 Elapsed: 00:00:00.84 # Mc/sec: 9914.14 // Query: T089749_3 [L=2911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.055 13.6 1.9 9.5 6.4 0.3 3.9 4 DUF912 Nucleopolyhedrovirus protein of unknown function (D 1.7 7.9 32.4 0.28 10.4 14.8 2.8 2 FAP Fibronectin-attachment protein (FAP) Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.3 0.0012 9.5 34 88 .. 1103 1151 .. 1099 1166 .. 0.44 2 ? 2.1 0.0 0.026 2.1e+02 45 83 .. 2205 2241 .. 2191 2243 .. 0.38 3 ? -0.1 0.0 0.12 1e+03 38 76 .. 2257 2296 .. 2245 2298 .. 0.37 4 ? -0.7 0.0 0.19 1.6e+03 52 80 .. 2371 2397 .. 2348 2401 .. 0.39 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0012 DUF912 34 aenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvi 88 +++++ +++++++++ +++++n +++ l+i +i + +++++ +++ + +i T089749_3 1103 HHQHNYHHHQYNHHHYHHHHHN---HHHYLHITMIIITTIITITIIITIT---II 1151 3344444444444444444444...3333333333333333333333222...22 PP == domain 2 score: 2.1 bits; conditional E-value: 0.026 DUF912 45 eknditekesnaaekaqalnillisllavvcvlvllyvi 83 ++++ ++ + ++++++ + i+++ +++++++ +i T089749_3 2205 QHHHHHHYH--HHHHHHHHHHHHITIIITITIIIIITII 2241 111222222..2233333333344444444444444444 PP == domain 3 score: -0.1 bits; conditional E-value: 0.12 DUF912 38 kekksaaeknditekesn.aaekaqalnillisllavvcv 76 ++ +s++++++ ++++++ ++++ q + i+++ +++ T089749_3 2257 SSPSSSSSHHNHHHDHHHhHHHHDQHHITITITIIITITI 2296 3322222222222222221233334344444444444444 PP == domain 4 score: -0.7 bits; conditional E-value: 0.19 DUF912 52 kesn.aaekaqalnillisllavvcvlvll 80 ++++ ++++++ ++i+++a v++ + T089749_3 2371 SHHHhHHHHHHHHITIIITIIA---VIITI 2397 2222112222222333333333...33332 PP >> FAP Fibronectin-attachment protein (FAP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 9.6 0.0098 80 19 90 .. 1145 1214 .. 1119 1220 .. 0.57 2 ? 10.4 14.8 3.5e-05 0.28 5 103 .. 2271 2369 .. 2214 2422 .. 0.68 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.0098 FAP 19 aiaavagasavalalPavanad.pePaPppPstaeaapaeaaaapaPaapapaPapadpnapeaaPapadPna 90 i+ +++++ +lP ++ p+ +P p + + +p+++++ +P +p ++P+p+++ + +P+ P + T089749_3 1145 IITITIIITIITSTLPLSSSPSlPKSSPSPSLPLSPTPSSSPS-KSPLSPSISPSPVSSPS--LPPSSPSPSS 1214 3333344566777777444433377777666666666664444.57888887777754333..2332223332 PP == domain 2 score: 10.4 bits; conditional E-value: 3.5e-05 FAP 5 daeskrrkglsktlaiaavagasavalalPavanadpePaPppPstaeaapaeaaaapaPaapapaPapadpnapeaaPapadPnap.apppadPnap 101 d ++++ + +++++i+ +++ ++ P+ + p+ +P + s+++ +p++++++p+ + ++P++++p++p+++P+ + P +p + p+ P + T089749_3 2271 DHHHHHHHHDQHHITITITIIITITIITSPSSPSPSPSSSPSSSSPSSPSPSPSSPSPSSSPSSSSPSSPSPSSPSPSPS-SSPSSPsSSPSSSPSSS 2367 55556666666666666666666666666665554444444443333333333333322222222333333333333332.12222101233333333 PP FAP 102 ap 103 +p T089749_3 2368 SP 2369 33 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 906 (0.0555624); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 102 (0.00625537); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.42u 0.46s 00:00:02.88 Elapsed: 00:00:01.05 # Mc/sec: 7931.31 // Query: T172342_1 [L=1427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 5832.01 // Query: T172342_2 [L=1426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 6475.47 // Query: T172342_3 [L=1426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-05 24.2 0.0 5e-05 23.4 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 3.1e-09 5e-05 5 54 .. 149 199 .. 146 206 .. 0.86 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 3.1e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAviea 54 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172342_3 149 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRA 199 68*******99999******766766.557778999**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 7554.71 // Query: T251555_1 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1821.90 // Query: T251555_2 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 1888.15 // Query: T251555_3 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.48 # Mc/sec: 2157.54 // Query: T212165_1 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.73 # Mc/sec: 11133.72 // Query: T212165_2 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.78 # Mc/sec: 10420.02 // Query: T212165_3 [L=2840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.74 # Mc/sec: 10979.40 // Query: T208585_1 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-06 26.4 0.0 6.4e-06 25.7 0.0 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.0 3.9e-10 6.4e-06 75 127 .. 225 275 .. 209 284 .. 0.81 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 3.9e-10 DDE_1 75 krkvlLllddsrshe.tvelsecelqniklvflPasstsllqPldqgvvselKa 127 + ++ +d++++h+ + +++i+++f Pa++t +lqP+dqgvv +K+ T208585_1 225 YFQNIITIDNAPGHSrSLMK---LYKEINVIFTPANTTFILQPMDQGVVLIFKS 275 3778999********55555...8************************999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 2886.84 // Query: T208585_2 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.61 # Mc/sec: 3118.77 // Query: T208585_3 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00062 19.3 0.1 0.0021 17.5 0.1 1.9 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.1 1.3e-07 0.0021 10 40 .. 156 185 .. 155 221 .. 0.84 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 1.3e-07 DDE_1 10 anaagsekLkplvigkgksprafknektkkk 40 a+aag+ kLkp++i+++++pra kn + k + T208585_3 156 AIAAGDFKLKPMLIYYSENPRALKN-YAKFT 185 89**********************9.55444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 3397.24 // Query: T101425_1 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.67 # Mc/sec: 13672.21 // Query: T101425_2 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.30s 00:00:01.60 Elapsed: 00:00:00.67 # Mc/sec: 13672.21 // Query: T101425_3 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.33s 00:00:01.68 Elapsed: 00:00:00.67 # Mc/sec: 13672.21 // Query: T009567_1 [L=4543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1266 (0.0776401); expected 326.1 (0.02) Passed bias filter: 350 (0.0214645); expected 326.1 (0.02) Passed Vit filter: 205 (0.0125721); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.60u 0.52s 00:00:05.11 Elapsed: 00:00:01.21 # Mc/sec: 10741.12 // Query: T009567_2 [L=4543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 662 (0.0405986); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.67u 0.49s 00:00:03.16 Elapsed: 00:00:01.07 # Mc/sec: 12146.50 // Query: T009567_3 [L=4542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1016 (0.0623084); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.05u 0.58s 00:00:04.63 Elapsed: 00:00:01.05 # Mc/sec: 12375.13 // Query: T009688_1 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.36s 00:00:02.02 Elapsed: 00:00:00.82 # Mc/sec: 16170.67 // Query: T009688_2 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.33s 00:00:01.90 Elapsed: 00:00:00.66 # Mc/sec: 20090.83 // Query: T009688_3 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.35s 00:00:01.79 Elapsed: 00:00:00.64 # Mc/sec: 20718.67 // Query: T316785_1 [L=2431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 9398.21 // Query: T316785_2 [L=2430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 10075.10 // Query: T316785_3 [L=2430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 9269.09 // Query: T317180_1 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.63 # Mc/sec: 5485.53 // Query: T317180_2 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.67 # Mc/sec: 5153.76 // Query: T317180_3 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 5153.76 // Query: T077748_1 [L=322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 1705.90 // Query: T077748_2 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.56 # Mc/sec: 1639.87 // Query: T077748_3 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.59 # Mc/sec: 1556.49 // Query: T124822_1 [L=391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.48 # Mc/sec: 2330.38 // Query: T124822_2 [L=391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 2330.38 // Query: T124822_3 [L=390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.55 # Mc/sec: 2028.59 // Query: T361829_1 [L=3965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 20255.70 // Query: T361829_2 [L=3965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 19225.75 // Query: T361829_3 [L=3964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.59 # Mc/sec: 19220.90 // Query: T275905_1 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 14.9 3.0 0.012 14.9 0.0 2.3 2 DUF1510 Protein of unknown function (DUF1510) 0.014 15.2 0.2 0.038 13.8 0.2 1.7 1 LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain 0.055 13.6 0.2 0.055 13.6 0.2 2.6 2 DUF912 Nucleopolyhedrovirus protein of unknown function 0.088 13.5 0.2 0.088 13.5 0.2 7.7 2 EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.12 12.2 5.6 0.2 11.4 5.6 1.2 1 ODV-E18 Occlusion-derived virus envelope protein ODV-E18 0.16 11.8 0.0 0.24 11.1 0.0 1.2 1 TMEM154 TMEM154 protein family 0.26 11.5 7.3 1.1 9.5 7.3 2.0 1 DUF3446 Domain of unknown function (DUF3446) Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 1.9 1.2 2.9e+03 78 78 .. 441 441 .. 369 523 .. 0.55 2 ? 14.9 0.0 5.3e-06 0.012 5 58 .. 610 663 .. 604 669 .. 0.65 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 1.2 DUF1510 78 s 78 + T275905_1 441 H 441 0 PP == domain 2 score: 14.9 bits; conditional E-value: 5.3e-06 DUF1510 5 krekkrkankvLniligivlllivivaaslfigsksdeeekasddeeeeseeed 58 + +++ + + i+i+i+ ++i+i+++ ++i s+s++++ +s+++ +s++++ T275905_1 610 HHHQRHHHHHTIIIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHH 663 334444555566667777777777788888888888887777777766666554 PP >> LRRC37AB_C LRRC37A/B like protein 1 C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.2 1.6e-05 0.038 85 139 .. 590 642 .. 566 650 .. 0.52 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.6e-05 LRRC37AB_C 85 inesteaqseqkeqksreltkevpeygYnnklilaisvtvvvmiliiilcLieic 139 ++ ++++++++++++++++++ +++++++ +i+ i++ ++++i+i+ + +i T275905_1 590 HRHHHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVTIIII--S 642 2333333344444455556666667777777777666666555555554444..4 PP >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 2.2 3.1 7.3e+03 44 44 .. 433 433 .. 348 531 .. 0.70 2 ? 13.6 0.2 2.4e-05 0.055 39 87 .. 593 639 .. 545 655 .. 0.57 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 3.1 DUF912 44 a 44 + T275905_1 433 H 433 0 PP == domain 2 score: 13.6 bits; conditional E-value: 2.4e-05 DUF912 39 ekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfv 87 ++++++++++ ++++++++++++ + +i ++++++++++++v ++ T275905_1 593 HHHHHRHHHQRHHHHHRHHHQRHHHHHTIIIIITIITIIIIIIVT--II 639 111222222222222223344444444444444444444433222..11 PP >> EphA2_TM Ephrin type-A receptor 2 transmembrane domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -86.5 91.8 7 1.6e+04 44 44 .. 461 461 .. 320 620 .. 0.71 2 ? 13.5 0.2 3.8e-05 0.088 4 49 .. 622 667 .. 619 674 .. 0.58 Alignments for each domain: == domain 1 score: -86.5 bits; conditional E-value: 7 EphA2_TM 44 e 44 + T275905_1 461 H 461 0 PP == domain 2 score: 13.5 bits; conditional E-value: 3.8e-05 EphA2_TM 4 aaiaglvllvilviivlvlvrrrsknrkqksdlsseekkeeensgk 49 ++i+ +++++i++i++++++++ s++++ +s++s++++ +++++++ T275905_1 622 IIIITIITIIIIIIVTIIIISSPSSSSSPSSSSSPSSSSHHHHHHH 667 4555666666666666666656666655555555555555555544 PP >> ODV-E18 Occlusion-derived virus envelope protein ODV-E18 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 5.6 8.7e-05 0.2 26 58 .. 623 655 .. 615 663 .. 0.68 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 8.7e-05 ODV-E18 26 llltilvvlviiillvllvqssstGsdssssna 58 +++ti+++++iii+ ++++ s s+ s sss++ T275905_1 623 IIITIITIIIIIIVTIIIISSPSSSSSPSSSSS 655 678999999999888888876554444333333 PP >> TMEM154 TMEM154 protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.0001 0.24 55 82 .. 616 643 .. 594 667 .. 0.66 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.0001 TMEM154 55 qlelvlmiiiPlvllillllvviiliqk 82 + + ++iii + +i++++v ii+i T275905_1 616 HHHHTIIIIITIITIIIIIIVTIIIISS 643 3444677777777777777777777754 PP >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 7.3 0.00045 1.1 22 51 .. 634 661 .. 623 671 .. 0.47 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00045 DUF3446 22 slvsglvgvanppsspssssssssssssss 51 +v ++ + ++pss+ss+sssss ssss T275905_1 634 IIV-TIIII-SSPSSSSSPSSSSSPSSSSH 661 222.24444.34444444444443333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1564 (0.0959156); expected 326.1 (0.02) Passed bias filter: 558 (0.0342205); expected 326.1 (0.02) Passed Vit filter: 224 (0.0137373); expected 16.3 (0.001) Passed Fwd filter: 69 (0.00423157); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 2.02u 0.49s 00:00:02.50 Elapsed: 00:00:00.72 # Mc/sec: 3957.48 // Query: T275905_2 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.03 14.5 11.6 0.077 13.2 11.6 1.6 1 DUF3446 Domain of unknown function (DUF3446) 1.4 8.4 12.4 2.1 7.8 12.4 1.2 1 SR-25 Nuclear RNA-splicing-associated protein 3.1 7.0 17.9 4.9 6.4 17.9 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> DUF3446 Domain of unknown function (DUF3446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 11.6 1.4e-05 0.077 20 69 .. 608 655 .. 599 662 .. 0.50 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.4e-05 DUF3446 20 llslvsglvgvanppsspsssssssssssssssspslscsvaaqqssele 69 ++ ++s v++ pss+ss+ss sssssss+ss+s+ ++++ + T275905_2 608 IVTIIS--VTIIIIPSSSSSPSSPSSSSSSSPSSSSHHHHHHHHHHHHRH 655 233444..233335666666666666666666555554444333333333 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.4 0.00039 2.1 65 98 .. 621 653 .. 618 660 .. 0.31 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00039 SR-25 65 ssssssssssssssssssssssddrkkrgkkkdk 98 sssss ss+sssssss ssss ++++++ +++++ T275905_2 621 SSSSSPSSPSSSSSSSPSSSSHHHHHHH-HHHHH 653 2222222222222222222222222222.22222 PP >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 17.9 0.00089 4.9 177 204 .. 632 659 .. 615 663 .. 0.52 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00089 SelP_N 177 eaeektehehahshkqghkhhekhghhH 204 +++++++ +++h+h++ h+hh++h+hhH T275905_2 632 SSSSSPSSSSHHHHHHHHHHHHRHHHHH 659 2333333344444444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1742 (0.106832); expected 326.1 (0.02) Passed bias filter: 717 (0.0439715); expected 326.1 (0.02) Passed Vit filter: 505 (0.0309702); expected 16.3 (0.001) Passed Fwd filter: 84 (0.00515148); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.60u 0.45s 00:00:03.05 Elapsed: 00:00:00.74 # Mc/sec: 3850.52 // Query: T275905_3 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 8.8 0.0 1.7 8.8 0.0 2.4 2 DUF912 Nucleopolyhedrovirus protein of unknown function (D Domain annotation for each model (and alignments): >> DUF912 Nucleopolyhedrovirus protein of unknown function (DUF912) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 4.3 1 1.6e+04 38 38 .. 478 478 .. 424 519 .. 0.61 2 ? 8.8 0.0 0.00011 1.7 40 83 .. 615 657 .. 597 661 .. 0.45 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 DUF912 38 k 38 + T275905_3 478 S 478 0 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00011 DUF912 40 kksaaeknditekesnaaekaqalnillisllavvcvlvllyvi 83 +s++++++ ++++++ ++++ + li+++ ++++++++ +i T275905_3 615 PSSSYHHHHHHHHHHH-HHHHRHHHHHLITIIIIITIIIIVTII 657 2223333333332322.333444444555555555555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1628 (0.0998405); expected 326.1 (0.02) Passed bias filter: 765 (0.0469152); expected 326.1 (0.02) Passed Vit filter: 460 (0.0282105); expected 16.3 (0.001) Passed Fwd filter: 144 (0.00883111); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.85u 0.51s 00:00:04.36 Elapsed: 00:00:00.97 # Mc/sec: 2934.56 // Query: T381533_1 [L=5094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 648 (0.03974); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.42s 00:00:02.06 Elapsed: 00:00:00.64 # Mc/sec: 22770.42 // Query: T381533_2 [L=5094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.62 # Mc/sec: 23504.95 // Query: T381533_3 [L=5093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.57 # Mc/sec: 25121.05 // Query: T042604_1 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 4302.69 // Query: T042604_2 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 4137.20 // Query: T042604_3 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 4131.70 // Query: T198091_1 [L=614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3584.80 // Query: T198091_2 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 3653.52 // Query: T198091_3 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3507.38 // Query: T010860_1 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 9418.30 // Query: T010860_2 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9062.89 // Query: T010860_3 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 9231.68 // Query: T235690_1 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2518.65 // Query: T235690_2 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 2464.72 // Query: T235690_3 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2513.04 // Query: T027959_1 [L=6157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.35s 00:00:01.89 Elapsed: 00:00:00.61 # Mc/sec: 28875.62 // Query: T027959_2 [L=6157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.62 # Mc/sec: 28409.89 // Query: T027959_3 [L=6156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.63 # Mc/sec: 27954.40 // Query: T091125_1 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 14271.76 // Query: T091125_2 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 31.0 0.0 2.4e-07 30.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 1.5e-11 2.4e-07 134 176 .. 2586 2637 .. 2556 2639 .. 0.88 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 1.5e-11 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 qG++lSPllfn++++ l r +r++ ++v+l+++aDD+ ++ ++ T091125_2 2586 QGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMNVHLEN 2637 ***********************99**********************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 13507.20 // Query: T091125_3 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 13036.51 // Query: T300173_1 [L=1812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 9599.67 // Query: T300173_2 [L=1812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 9425.13 // Query: T300173_3 [L=1812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 9425.13 // Query: T002384_1 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 5875.30 // Query: T002384_2 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 5875.30 // Query: T002384_3 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 4532.37 // Query: T004124_1 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1002 (0.0614498); expected 326.1 (0.02) Passed bias filter: 326 (0.0199926); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.35s 00:00:02.20 Elapsed: 00:00:00.69 # Mc/sec: 13661.50 // Query: T004124_2 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.74 # Mc/sec: 12738.43 // Query: T004124_3 [L=3295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 325 (0.0199313); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.44s 00:00:02.19 Elapsed: 00:00:00.74 # Mc/sec: 12738.43 // Query: T367334_1 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 8578.52 // Query: T367334_2 [L=2159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.27s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 9083.14 // Query: T367334_3 [L=2158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 9497.96 // Query: T184612_1 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 5079.07 // Query: T184612_2 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5235.77 // Query: T184612_3 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4997.78 // Query: T277349_1 [L=5898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.35s 00:00:01.83 Elapsed: 00:00:00.66 # Mc/sec: 25565.42 // Query: T277349_2 [L=5898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.40s 00:00:02.18 Elapsed: 00:00:00.79 # Mc/sec: 21358.45 // Query: T277349_3 [L=5897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.41s 00:00:02.29 Elapsed: 00:00:00.88 # Mc/sec: 19170.81 // Query: T099954_1 [L=7786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.68u 0.39s 00:00:03.07 Elapsed: 00:00:00.89 # Mc/sec: 25027.44 // Query: T099954_2 [L=7786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.49s 00:00:02.80 Elapsed: 00:00:00.83 # Mc/sec: 26836.65 // Query: T099954_3 [L=7785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.55u 0.46s 00:00:03.01 Elapsed: 00:00:00.98 # Mc/sec: 22726.08 // Query: T127747_1 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.72 # Mc/sec: 6436.87 // Query: T127747_2 [L=1619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 8739.03 // Query: T127747_3 [L=1619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.63 # Mc/sec: 7351.88 // Query: T381543_1 [L=5031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.05 13.7 0.0 0.095 12.8 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.8e-06 0.095 18 53 .. 1501 1536 .. 1496 1540 .. 0.89 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.8e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381543_1 1501 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1536 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.30s 00:00:01.71 Elapsed: 00:00:00.62 # Mc/sec: 23214.25 // Query: T381543_2 [L=5031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.34s 00:00:01.83 Elapsed: 00:00:00.69 # Mc/sec: 20859.18 // Query: T381543_3 [L=5031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:00.77 # Mc/sec: 18691.99 // Query: T265034_1 [L=344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 91 (0.00558077); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.55 # Mc/sec: 1789.32 // Query: T265034_2 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-22 77.7 0.4 8.3e-22 77.0 0.4 1.2 1 Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP Domain annotation for each model (and alignments): >> Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.0 0.4 5.1e-26 8.3e-22 4 89 .. 113 198 .. 111 199 .. 0.92 Alignments for each domain: == domain 1 score: 77.0 bits; conditional E-value: 5.1e-26 Sec3-PIP2_bind 4 prfLclsvtksgrkevrlhkvKenengs..sfsigktWkLkeLklvegkdpdkddpeFdltfdkpykweaesskeknaFirsLvklyr 89 + +Lc+svtk+ +ev++ vK+ + g +++++k+W+L++L++++gk++d+d+p Fdl+f+k+y +ea s++ k+aF+r++ kl + T265034_2 113 RYYLCVSVTKK--EEVKIVMVKHYRIGLdeKYEVTKKWSLNDLQMIDGKEADTDNPFFDLHFKKVYSLEAYSCASKYAFARTVNKLNH 198 789********..56*******999554568****************************************************99875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 1663.16 // Query: T265034_3 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.51 # Mc/sec: 1924.05 // Query: T346628_1 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7583.71 // Query: T346628_2 [L=1510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 6645.93 // Query: T346628_3 [L=1510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 7999.73 // Query: T076044_1 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-10 40.6 0.0 3e-10 39.7 0.0 1.4 1 dUTPase dUTPase 6.3e-05 23.0 0.1 0.00011 22.3 0.1 1.3 1 rve Integrase core domain 0.00013 22.1 1.2 0.0061 16.6 0.0 2.6 3 RNase_H RNase H Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.7 0.0 5.5e-14 3e-10 11 104 .. 543 636 .. 534 658 .. 0.92 Alignments for each domain: == domain 1 score: 39.7 bits; conditional E-value: 5.5e-14 TT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEB CS dUTPase 11 pesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifari 104 +sAg+++ +++ +++pg+ ++ p++ ++ lp g+ +l+l S a kg+iv+ gvid d++ e+++ l n++k++ + ++gd + L++ ++ T076044_1 543 LRSAGLEVLVPEGGMLPPGDIIMFPINWKLRLPPGHFGLLLLLSQQANKGVIVLAGVIDPDFQDEISLLLHNRGKEEYTWNTGDPLGSLLVLPC 636 579*********************************************************************************9999999887 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.1 2e-08 0.00011 64 117 .. 417 469 .. 406 471 .. 0.87 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 2e-08 rve 64 gvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 g p + sD+g+ +t k++++++ ++i++s++ p++p++ ++E n lk T076044_1 417 GI-PHSIASDQGTHFTVKEVQQWAHTHRIHWSYHVPHHPESARLIEWWNSPLKS 469 33.999***********************************9999988887775 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 1.1e-06 0.0061 35 80 .. 174 221 .. 147 224 .. 0.79 2 ? 3.6 0.0 0.012 65 103 137 .. 242 280 .. 240 284 .. 0.80 3 ? -3.5 0.3 1.8 9.7e+03 73 119 .. 431 447 .. 421 457 .. 0.58 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1.1e-06 EEECCCEHHHHHHHHHHHHHHH.TT.SC.SEEEEEES-HHHHHHHHCC CS RNase_H 35 apleeaqtnnraELsAvieaLk.alksd.ekvniytDSkYvvkgitqw 80 + e ++ + aEL Av+ +++ a k++ ++v++ytDS v +g+t+w T076044_1 174 KDSGEGKSSQWAELRAVHLVVHfAWKENwPDVQLYTDSWAVANGLTRW 221 3334699***************9876555*****************98 PP == domain 2 score: 3.6 bits; conditional E-value: 0.012 HHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHH CS RNase_H 103 laellkelakkkkvqlkhvkgHaGd....pkgNemaDrl 137 ++ l+e k +k+ ++hv +H+ + + N+++Dr+ T076044_1 242 MWMDLSEWSKSMKIFVSHVSAHQWVtsaeEEFNNQVDRM 280 588899999*************87755554568888886 PP == domain 3 score: -3.5 bits; conditional E-value: 1.8 HHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEE CS RNase_H 73 vvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlk 119 +vk ++++ a+ ++++++ T076044_1 431 TVK------------------------------EVQQWAHTHRIHWS 447 444..............................44455555566665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 6187.25 // Query: T076044_2 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 5634.81 // Query: T076044_3 [L=1103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5634.81 // Query: T301994_1 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.63 # Mc/sec: 9903.92 // Query: T301994_2 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.85 # Mc/sec: 7340.55 // Query: T301994_3 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.73 # Mc/sec: 8547.22 // Query: T159789_1 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 3358.17 // Query: T159789_2 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 3358.17 // Query: T159789_3 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.68 # Mc/sec: 3205.81 // Query: T070826_1 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.66 # Mc/sec: 10944.84 // Query: T070826_2 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 10174.08 // Query: T070826_3 [L=2525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 10781.49 // Query: T037512_1 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-22 79.0 1.2 3.1e-22 78.1 0.5 1.9 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.1 0.5 1.9e-26 3.1e-22 7 67 .. 347 407 .. 347 420 .. 0.92 2 ? -2.5 0.0 0.27 4.4e+03 12 26 .. 425 439 .. 418 443 .. 0.77 Alignments for each domain: == domain 1 score: 78.1 bits; conditional E-value: 1.9e-26 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr 67 + aqWld++e++k++pk+ lhq+kv++tVwWs++gli+y+ l+p+eti se+ aqq++++r T037512_1 347 QPAQWLDQEEAAKHFPKAILHQNKVVVTVWWSTAGLIHYSSLNPSETIISEKDAQQINEMR 407 579*********************************************************5 PP == domain 2 score: -2.5 bits; conditional E-value: 0.27 Transposase_1 12 ldkgetpkkvpkpel 26 l++++++++vp+p l T037512_1 425 LPQDKAQPHVPQPVL 439 8999******99855 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.72 # Mc/sec: 2161.52 // Query: T037512_2 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 2394.29 // Query: T037512_3 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 2470.30 // Query: T051455_1 [L=2546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.64 # Mc/sec: 11380.74 // Query: T051455_2 [L=2545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.84 # Mc/sec: 8667.63 // Query: T051455_3 [L=2545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 10254.67 // Query: T336907_1 [L=663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0016 17.9 0.0 10 5.9 0.0 3.9 5 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 0.017 2.8e+02 5 29 .. 353 377 .. 349 383 .. 0.58 2 ! 4.8 0.0 0.0014 23 3 34 .. 363 394 .. 361 396 .. 0.85 3 ! 3.2 0.0 0.0045 73 3 29 .. 381 407 .. 373 408 .. 0.72 4 ! 5.9 0.0 0.00061 10 3 29 .. 540 566 .. 534 573 .. 0.61 5 ? 1.4 0.0 0.016 2.6e+02 3 29 .. 570 596 .. 568 600 .. 0.79 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.017 -TTEEE-TTEEEETTEEE-TTEEEE CS Hexapep 5 GsnvlIgpfaviggnVkIGdnvkIg 29 G+ v +g a g+ + +Gd +++g T336907_1 353 GDEVSLGDEARMGDEARLGDEARLG 377 5555666666666666666665555 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0014 EE-TTEEE-TTEEEETTEEE-TTEEEETTEEE CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 + G+ + +g a +g+ V Gd +++g +++ T336907_1 363 RMGDEARLGDEARLGDEVRMGDEARLGDEARL 394 6799999999999********99999987666 PP == domain 3 score: 3.2 bits; conditional E-value: 0.0045 EE-TTEEE-TTEEEETTEEE-TTEEEE CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIg 29 + G+ + +g a +g+ + +Gd +++g T336907_1 381 RMGDEARLGDEARLGDKARLGDEARLG 407 567777777777777777777777665 PP == domain 4 score: 5.9 bits; conditional E-value: 0.00061 EE-TTEEE-TTEEEETTEEE-TTEEEE CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIg 29 ++G+ v +g a++g+ + +Gd +++g T336907_1 540 RLGDEVSLGDEAQLGDEARLGDEARLG 566 456666666666666666666666655 PP == domain 5 score: 1.4 bits; conditional E-value: 0.016 EE-TTEEE-TTEEEETTEEE-TTEEEE CS Hexapep 3 vIGsnvlIgpfaviggnVkIGdnvkIg 29 + G+ + +g a +g+ + Gd +++g T336907_1 570 RMGDEARLGDEARLGDEARMGDEARLG 596 578888888889999988888888877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.64 # Mc/sec: 2963.64 // Query: T336907_2 [L=663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 3109.39 // Query: T336907_3 [L=662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 3104.70 // Query: T238322_1 [L=14807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00038 19.9 1.2 0.59 9.7 0.0 2.7 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 0.5 0.00014 2.2 3 13 .. 1074 1084 .. 1074 1084 .. 0.96 2 ! 9.7 0.0 3.6e-05 0.59 3 16 .. 5560 5573 .. 5560 5575 .. 0.93 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00014 DUF1725 3 agKWMELEnII 13 a++WM LEnII T238322_1 1074 ATTWMSLENII 1084 89********9 PP == domain 2 score: 9.7 bits; conditional E-value: 3.6e-05 DUF1725 3 agKWMELEnIILSE 16 a++WM LE+ +LSE T238322_1 5560 AATWMNLEDFMLSE 5573 79***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.71u 0.54s 00:00:06.25 Elapsed: 00:00:01.29 # Mc/sec: 32837.45 // Query: T238322_2 [L=14807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.3 6.7 6.6 11 5.9 6.6 1.2 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 6.6 0.00067 11 124 185 .. 12506 12568 .. 12477 12636 .. 0.63 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00067 DDHD 124 lklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.e 185 kl+eee+ + +e+++++e+++e+++e++e++++e+++++++++++++ee++e e +e+ee e T238322_2 12506 AKLHEEEEDEGEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEgE 12568 445555554444444444444444444444333333333333333333333333332333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1176 (0.0721207); expected 326.1 (0.02) Passed bias filter: 488 (0.0299276); expected 326.1 (0.02) Passed Vit filter: 259 (0.0158837); expected 16.3 (0.001) Passed Fwd filter: 73 (0.00447688); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 13.35u 0.73s 00:00:14.08 Elapsed: 00:00:01.95 # Mc/sec: 21723.24 // Query: T238322_3 [L=14807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2197 (0.134736); expected 326.1 (0.02) Passed bias filter: 715 (0.0438489); expected 326.1 (0.02) Passed Vit filter: 439 (0.0269226); expected 16.3 (0.001) Passed Fwd filter: 64 (0.00392494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 17.87u 0.77s 00:00:18.64 Elapsed: 00:00:02.63 # Mc/sec: 16106.58 // Query: T367453_1 [L=1881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 8031.67 // Query: T367453_2 [L=1881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.65 # Mc/sec: 8278.80 // Query: T367453_3 [L=1880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.73 # Mc/sec: 7367.62 // Query: T153291_1 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 932 (0.0571569); expected 326.1 (0.02) Passed bias filter: 256 (0.0156997); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.59 # Mc/sec: 13455.60 // Query: T153291_2 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 13687.59 // Query: T153291_3 [L=2775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.085 11.5 2.7 0.2 10.3 2.7 1.5 1 DUF2207 Predicted membrane protein (DUF2207) 2.6 8.1 16.7 4.2 7.4 16.7 1.2 1 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 Domain annotation for each model (and alignments): >> DUF2207 Predicted membrane protein (DUF2207) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 2.7 2.4e-05 0.2 383 438 .. 1099 1180 .. 1080 1189 .. 0.68 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 2.4e-05 DUF2207 383 rlsalglilillglilillallllvll............................lvfllilllillliaiivlllfsrllgrr 438 al+l+++++++++++++l l l ++f+++lll+lll+++++lll+++ l + T153291_3 1099 GAAALLLLFFFFFFFFFFFLLPLP--LplpspppspplllllilpspplplpllfFFFFFLLLLLLLLLLFLLLLLPRIELNKK 1180 334444444444444444444444..356*********************9998766666666666666666777766655554 PP >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 16.7 0.00051 4.2 180 214 .. 1542 1576 .. 1496 1580 .. 0.66 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00051 RNA_pol_3_Rpc31 180 aeeeddeeekkekedeeeeeeeeeeeddefdddde 214 +eee++e+e++e+e eeeeeeeeeee++e ++++e T153291_3 1542 EEEEEEEQEEEEGEGEEEEEEEEEEEEEEKEEEEE 1576 22333322333333343333334444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1055 (0.0647001); expected 326.1 (0.02) Passed bias filter: 441 (0.0270453); expected 326.1 (0.02) Passed Vit filter: 155 (0.0095057); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.59u 0.33s 00:00:01.92 Elapsed: 00:00:00.62 # Mc/sec: 12804.52 // Query: T155178_1 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 13159.82 // Query: T155178_2 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 13159.82 // Query: T155178_3 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 13159.82 // Query: T111764_1 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6664.05 // Query: T111764_2 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6797.33 // Query: T111764_3 [L=1188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6797.33 // Query: T164914_1 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3612.50 // Query: T164914_2 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3679.03 // Query: T164914_3 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3679.03 // Query: T078055_1 [L=390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2276.99 // Query: T078055_2 [L=390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2276.99 // Query: T078055_3 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2271.15 // Query: T353755_1 [L=1427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-06 25.4 0.0 9.1e-06 24.8 0.0 1.2 1 AAA_9 ATP-binding dynein motor region D5 Domain annotation for each model (and alignments): >> AAA_9 ATP-binding dynein motor region D5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 5.6e-10 9.1e-06 24 127 .. 1181 1294 .. 1167 1301 .. 0.72 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 5.6e-10 ..S-EEEESSSCCHHHHHHH......HEE-TT...STTHHHHHHHHHHCT-EEEES--.SSHHCCCHHHHTTT-EE.......S.....EEEESSCE. CS AAA_9 24 skrwPlliDPqgqaikwiknkekeklkvikls...dkkflktLenairfGkpllienvgeeldpiLepvLekeiikk.....gk.....kliklgdke 108 rwPl+iDP gqa ++++ + ++ +++++ + +++ L a+r+Gkpl+++ +e+l p+++ Le + + + +++++ T353755_1 1181 DGRWPLVIDPLGQAATFLRYQDTNYVDTVNPEplrPETMWLALLGALRYGKPLVFDLREEDLFPVVQRQLEAVQERYlsllrPTdgpeySPTQFQEQ- 1277 35******************8888888998887765667778999*************999999999999843333222332013332233333333. PP EE--SS-EEEEEESSTTTH CS AAA_9 109 ieynenFrLylttklsnph 127 e+FrL+++tk + p T353755_1 1278 --RLEHFRLFFVTKVQWPP 1294 ..44679999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8004.71 // Query: T353755_2 [L=1427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 9.0 4.3 1.8 8.5 4.3 1.2 1 DUF1664 Protein of unknown function (DUF1664) Domain annotation for each model (and alignments): >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 4.3 0.00011 1.8 37 110 .. 1041 1114 .. 1039 1126 .. 0.92 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00011 DUF1664 37 rslsdavasvskqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeav 110 rs++ v++++++ +q ++l+++ +Ls+ri + d+ +++ +k + + +++ + ++++++++ ++ +ea+ T353755_2 1041 RSMTLKVQQLTREQQQCHKELQQAYCELSRRISEHDQCEWRCMDKTKLTLQAIKDTEAQVDRLRQEAQKAEEAL 1114 89999*************************************************************99988875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 741 (0.0454434); expected 326.1 (0.02) Passed bias filter: 291 (0.0178462); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 7850.78 // Query: T353755_3 [L=1426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 7697.25 // Query: T337178_1 [L=6384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1892 (0.116031); expected 326.1 (0.02) Passed bias filter: 412 (0.0252668); expected 326.1 (0.02) Passed Vit filter: 333 (0.0204219); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.66u 0.43s 00:00:05.09 Elapsed: 00:00:00.92 # Mc/sec: 19851.67 // Query: T337178_2 [L=6384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1519 (0.0931559); expected 326.1 (0.02) Passed bias filter: 482 (0.0295597); expected 326.1 (0.02) Passed Vit filter: 417 (0.0255734); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.72u 0.49s 00:00:05.21 Elapsed: 00:00:00.93 # Mc/sec: 19638.21 // Query: T337178_3 [L=6383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1486 (0.0911321); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 205 (0.0125721); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.41u 0.46s 00:00:03.87 Elapsed: 00:00:00.79 # Mc/sec: 23114.78 // Query: T111722_1 [L=6405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.32s 00:00:01.82 Elapsed: 00:00:00.61 # Mc/sec: 30038.72 // Query: T111722_2 [L=6405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.2 1.6 0.19 11.5 1.6 1.2 1 Sec8_exocyst Sec8 exocyst complex component specific domain Domain annotation for each model (and alignments): >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 1.6 1.1e-05 0.19 62 120 .. 6080 6138 .. 6075 6140 .. 0.92 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.1e-05 Sec8_exocyst 62 ehyqaFnssigsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyk 120 e + Fn+ + +k + i+e ++ +++lK+sl e ++ l + +k ++el++rs++ + T111722_2 6080 EQWENFNKETENAKKYQTEIMELKNMITALKKSLDEGNSRLDQAEKRISELKERSLEIN 6138 66789**************************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 630 (0.0386361); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.86u 0.35s 00:00:02.21 Elapsed: 00:00:00.66 # Mc/sec: 27763.05 // Query: T111722_3 [L=6404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 17.5 3.8 0.0015 17.3 2.2 1.7 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 2.2 9.2e-08 0.0015 211 259 .. 6179 6227 .. 6171 6228 .. 0.92 2 ? -1.4 0.0 0.045 7.4e+02 292 332 .. 6254 6295 .. 6252 6298 .. 0.86 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 9.2e-08 HHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 211 ilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 i+++i en +l k+++ +iqe+++ Pn+ +sk ++r i ++++k++ T111722_3 6179 IFKEITVENSSDLWKKMDTQIQEAQKIPNKMNSKTFTARDIKIKLSKTK 6227 89*****************************************998875 PP == domain 2 score: -1.4 bits; conditional E-value: 0.045 HHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEES CS Transposase_22 292 lkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfi 332 l +rew d++++l k+ + + P kls+ + e f+ T111722_3 6254 LANQREWDDILKVLTFLKLPSKNTVPGkKLSFRNEDERHTFQ 6295 5678***************99999996369**9999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.45u 0.35s 00:00:01.79 Elapsed: 00:00:00.64 # Mc/sec: 28626.18 // Query: T125888_1 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6159.20 // Query: T125888_2 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6159.20 // Query: T125888_3 [L=1097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.041 12.7 0.4 0.059 12.2 0.4 1.1 1 MdoG Periplasmic glucan biosynthesis protein, MdoG Domain annotation for each model (and alignments): >> MdoG Periplasmic glucan biosynthesis protein, MdoG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.4 3.6e-06 0.059 301 323 .. 97 119 .. 91 133 .. 0.90 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 3.6e-06 --TTT-GGG--EEEEEESS---E CS MdoG 301 qDlearYekRPslwvepkgdwgk 323 qD+e+ +e+RPs w ep++dwg+ T125888_3 97 QDMETGWEQRPSQWPEPSQDWGA 119 8*********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6035.25 // Query: T362404_1 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-14 52.1 0.0 9.9e-14 51.4 0.0 1.3 1 rve Integrase core domain 6.9e-06 25.8 2.5 6.9e-06 25.8 2.5 2.7 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.15 11.8 6.7 0.62 9.8 4.3 2.7 2 zf-CCHC_2 Zinc knuckle 0.9 9.2 7.5 2.4 7.8 3.5 2.7 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.4 0.0 2.4e-17 9.9e-14 4 118 .. 3129 3241 .. 3127 3242 .. 0.96 Alignments for each domain: == domain 1 score: 51.4 bits; conditional E-value: 2.4e-17 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsde..mdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrp 99 p + wq+D t ++ + ++ +yllv++d+f r++ a+++ +e + + + + ll ++ rfg p + sDng ++s+ ++++ + lgi++ +++p T362404_1 3129 PAQDWQIDSTLMP--RVWKLKYLLVWVDTFIRWVEAFPTGSEg*KGHCSYFLLLTDIIPRFGL--PTSIQSDNGLVFISQITQAVSQALGIQWNLHAP 3222 7889******999..88889**************************************99999..9******************************** PP rve 100 grpqdnGkvErfnrtlkde 118 ++pq GkvE+ +lk++ T362404_1 3223 YHPQFSGKVEKAKDLLKTH 3241 ***********99988875 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 2.5 1.7e-09 6.9e-06 2 17 .. 2179 2194 .. 2178 2195 .. 0.94 2 ? -2.2 0.6 1.2 4.8e+03 11 16 .. 2209 2214 .. 2209 2214 .. 0.99 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 1.7e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 +C++C++pGH+a++Cp T362404_1 2179 PCFKCQKPGHWAKECP 2194 7**************9 PP == domain 2 score: -2.2 bits; conditional E-value: 1.2 STTTTS CS zf-CCHC 11 HiardC 16 H+++dC T362404_1 2209 HWKSDC 2214 ****** PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 4.3 0.00015 0.62 6 21 .] 2180 2195 .. 2180 2195 .. 0.93 2 ? 1.1 0.0 0.081 3.3e+02 9 17 .. 3818 3826 .. 3817 3827 .. 0.89 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00015 zf-CCHC_2 6 ChiCgkkGHyIqdCPt 21 C C+k+GH+ ++CP+ T362404_1 2180 CFKCQKPGHWAKECPR 2195 888************5 PP == domain 2 score: 1.1 bits; conditional E-value: 0.081 zf-CCHC_2 9 CgkkGHyIq 17 C ++GHy++ T362404_1 3818 CRIPGHYFS 3826 99*****86 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 3.5 0.0006 2.4 3 18 .. 2178 2193 .. 2176 2194 .. 0.91 2 ? 2.1 0.1 0.036 1.5e+02 11 18 .. 2207 2214 .. 2202 2223 .. 0.90 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0006 -B-TTT-SSBS-TTT- CS zf-CCHC_5 3 glCpRCkkgkHwardC 18 g C +C k Hwa++C T362404_1 2178 GPCFKCQKPGHWAKEC 2193 67************** PP == domain 2 score: 2.1 bits; conditional E-value: 0.036 SBS-TTT- CS zf-CCHC_5 11 gkHwardC 18 g Hw++dC T362404_1 2207 GPHWKSDC 2214 78****** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 19734.71 // Query: T362404_2 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-15 56.4 0.1 3.7e-15 55.9 0.1 1.2 1 Gag_p30 Gag P30 core shell protein 1.7e-11 44.0 0.1 5.3e-11 42.3 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 2e-09 37.5 0.0 3.5e-09 36.7 0.0 1.4 1 RVP Retroviral aspartyl protease 9.4e-06 24.4 0.7 1.4e-05 23.8 0.7 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) 0.0035 17.4 0.0 0.0058 16.7 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.026 15.1 0.1 0.048 14.2 0.1 1.4 1 Asp_protease_2 Aspartyl protease 0.043 14.2 0.0 0.079 13.4 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.9 0.1 1.6e-18 3.7e-15 100 210 .. 2023 2133 .. 2013 2134 .. 0.89 Alignments for each domain: == domain 1 score: 55.9 bits; conditional E-value: 1.6e-18 Gag_p30 100 egreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatl.k 196 +g + l+ gl+ aa + n k+ke ++ k e+pa f+ l + rryt +pe e + + + fi+qsa++irkklq+le +tl + T362404_2 2023 QGIARQDYMISCLVQGLQKAAYKAVNYDKLKETTENKGENPAQFMAHLAATLRRYTAPNPEGTEGRLILNMHFITQSAPNIRKKLQKLES-GPQTL*Q 2119 4544445556789***************************************************************************98.46799** PP Gag_p30 197 dlvkeaekvynkre 210 +l++ a kv+n re T362404_2 2120 ELINPAFKVFNNRE 2133 ***********997 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.1 2.3e-14 5.3e-11 1 219 [. 2454 2616 .. 2454 2630 .. 0.86 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 2.3e-14 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 i+K++ +syR++ d++ +n+++ +++ +p+ + s + ++ ++++ +Dlk+aF+++pl+ +++l+af+ T362404_2 2454 IQKPD-KSYRLV----QDLRFINQIVLP---------IHPVMPNPYTLLS------------SIPPSTTHYSVIDLKDAFFTIPLHPSSQPLFAFTWT 2525 89***.*****7....7***********.........9999999888822............246777*****************************9 PP .........................TEEEEESB--S..T-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpq..GsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkes 194 ++ + +++ ++++ G+ SP f+ ++++ l ++r +l++Y+DD+l+ s s ++ q+ + ++l + T362404_2 2526 DP------------------DT-HQSQQLTWTV--Lp*GFRDSPHYFSQALSRDLLSFRPF--VSHLIQYVDDLLLCSPSYQSSQQDTILLLQHLYSK 2600 77..................22.2245555554..457789******************98..59********************************* PP T--BEGGG-EEE.....ESSEEETT CS RVT_1 195 glkinpeKtklvlfsgkseevkyLG 219 g++++p+K ++ + yLG T362404_2 2601 GYRVSPSKAQIST---------YLG 2616 ***********95.........444 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.7 0.0 1.5e-12 3.5e-09 6 100 .. 2263 2352 .. 2258 2353 .. 0.85 Alignments for each domain: == domain 1 score: 36.7 bits; conditional E-value: 1.5e-12 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++++ ++gk + +l+DtGA+++ ++ + P + a +++ i g+ ++ ++ + ++ + ++++ +s+l++p++pv+ll d+L+kl L T362404_2 2263 RVTLTVEGKSVPFLIDTGATHSTLPSFQGPVS----LAPTTVVHIDGQASKPLKTPQ-LWYQIRQHSFMRSFLVIPTCPVPLLDQDILTKLSSSL 2352 68999***************************....99*******999977777764.444444455557********************99877 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.7 6.2e-09 1.4e-05 232 277 .. 3520 3565 .. 3508 3579 .. 0.81 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 6.2e-09 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 232 kegtddrlldllqgayltLnatnpsltedCwlClesgppyyeaiav 277 ++ + l + +++++++L ++npsl+ dCwlC+ +++yy a++ T362404_2 3520 STPPSNYLQQTINLTHSLLTISNPSLARDCWLCISFSSSYYTAVPA 3565 344456667778889****************************996 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 2.5e-06 0.0058 3 56 .. 2864 2919 .. 2862 2928 .. 0.81 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 2.5e-06 SEEEEEEEEEECT..TTEEEEE.EEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 3 avvvYtDGsclgn..sgeggag.avlykegarnisapleeaqtnnraELsAvieaLk 56 +++++ DGs++++ +g+ag a++++ + + a+l++++t ++aEL+A+++aL T362404_2 2864 DHTWFIDGSSSKTs*LTPGKAG*AIVSHS-SITETAALSPFTTSQQAELIALTHALT 2919 579********99888*****99877544.3566677789****************7 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.1 2e-05 0.048 1 24 [. 2264 2287 .. 2264 2289 .. 0.92 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlis 24 v++t++Gk v fl+DTGa++++++ T362404_2 2264 VTLTVEGKSVPFLIDTGATHSTLP 2287 6789****************9986 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 3.4e-05 0.079 1 24 [. 2264 2287 .. 2264 2289 .. 0.92 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 3.4e-05 EEEEETTEEEEEEEETT-SS-EEE CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiis 24 v++t++gk+v fl+DTGA++++++ T362404_2 2264 VTLTVEGKSVPFLIDTGATHSTLP 2287 6789****************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.57 # Mc/sec: 19394.45 // Query: T362404_3 [L=3932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 19734.71 // Query: T191973_1 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 8988.13 // Query: T191973_2 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 10559.98 // Query: T191973_3 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 9119.98 // Query: T158792_1 [L=2137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 9124.77 // Query: T158792_2 [L=2137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 9263.02 // Query: T158792_3 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.64 # Mc/sec: 9548.02 // Query: T315890_1 [L=4365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:00.87 # Mc/sec: 14353.47 // Query: T315890_2 [L=4364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.36s 00:00:01.81 Elapsed: 00:00:00.72 # Mc/sec: 17339.81 // Query: T315890_3 [L=4364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.35s 00:00:01.79 Elapsed: 00:00:00.81 # Mc/sec: 15413.16 // Query: T069826_1 [L=10847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.03u 0.53s 00:00:03.55 Elapsed: 00:00:01.08 # Mc/sec: 28732.80 // Query: T069826_2 [L=10847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.67 10.1 2.2 1.3 9.1 2.2 1.4 1 FXR_C1 Fragile X-related 1 protein C-terminal region 2 Domain annotation for each model (and alignments): >> FXR_C1 Fragile X-related 1 protein C-terminal region 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 2.2 8.2e-05 1.3 41 69 .. 8289 8317 .. 8285 8321 .. 0.87 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 8.2e-05 FXR_C1 41 anRRRRsRRRRtDedatlmDGmsesDnas 69 +RRR RR R De+ + DG se +s T069826_2 8289 CRKRRRKRRWRLDEEVVACDGKSEMGRMS 8317 56899******************987777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.23u 0.52s 00:00:03.75 Elapsed: 00:00:01.10 # Mc/sec: 28210.38 // Query: T069826_3 [L=10846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.00u 0.51s 00:00:03.51 Elapsed: 00:00:00.90 # Mc/sec: 34476.18 // Query: T346695_1 [L=1446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 6566.29 // Query: T346695_2 [L=1446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 6463.69 // Query: T346695_3 [L=1445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 7252.45 // Query: T276716_1 [L=1528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.62 # Mc/sec: 7050.56 // Query: T276716_2 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.77 # Mc/sec: 5673.36 // Query: T276716_3 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 6520.13 // Query: T277130_1 [L=3810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.70 # Mc/sec: 15571.09 // Query: T277130_2 [L=3810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.3 0.1 0.091 12.3 0.1 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 5.6e-06 0.091 1 13 [. 3691 3703 .. 3691 3708 .. 0.89 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.6e-06 DUF1725 1 kFagKWMELEnII 13 +Fa++WM LE I+ T277130_2 3691 SFAATWMQLEAIL 3703 7***********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.66 # Mc/sec: 16514.79 // Query: T277130_3 [L=3809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.79 # Mc/sec: 13793.55 // Query: T383224_1 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-05 21.8 0.0 8.9e-05 21.3 0.0 1.1 1 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.0 5.4e-09 8.9e-05 147 194 .. 1783 1830 .. 1773 1856 .. 0.91 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 5.4e-09 Tektin 147 rllraakyeLekdlsdKeealeiDeeclslkntsanisykpgaerlde 194 rl+r+ + +e+d+sdK ea+++De+c + +++s++++ +p l+ T383224_1 1783 RLNREHMEICEMDWSDKVEAYNLDETCGRHRSQSTEVQAHPALHHLPR 1830 789*************************************99888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.62 # Mc/sec: 9616.08 // Query: T383224_2 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-19 67.7 0.0 9.7e-19 67.2 0.0 1.1 1 Tektin Tektin family ------ inclusion threshold ------ 0.051 13.2 0.1 0.086 12.5 0.1 1.2 1 SPAM Salmonella surface presentation of antigen gene typ Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.2 0.0 1.2e-22 9.7e-19 187 272 .. 1939 2024 .. 1929 2042 .. 0.92 Alignments for each domain: == domain 1 score: 67.2 bits; conditional E-value: 1.2e-22 Tektin 187 pgaerldetsstpeeWekftkdnieraekeraasaqLreaidsilkqtandlraqaeavnealrkrieeteeaknkleeqlkkvle 272 g r++ ++stpe+ +kft+dn+ ra++er +sa+L +d il++t++dl q++avn a+ +r+ee+e+a++kl+++l+kvl+ T383224_2 1939 SGRGRWPRSASTPETRTKFTQDNLCRAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLQKVLR 2024 56678999***************************************************************************975 PP >> SPAM Salmonella surface presentation of antigen gene type M protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.1e-05 0.086 51 126 .. 1963 2040 .. 1957 2045 .. 0.85 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.1e-05 SPAM 51 qrpegksldreelyallrkqaivrrqlkeLeLqlvaiq....ekrselqkekeelskkskyWLrkedkyrrWqkvqkrla 126 r++ ++ld +l+ l +i+r ++L+Lq +a++ + el++ + +l++++++ Lr e+++ ++q rl+ T383224_2 1963 CRAQRERLDSANLWVLV--DCILRDTSEDLGLQCDAVNlafgRRCEELEDARHKLQHHLQKVLRWEGDFAATRNTQARLK 2040 57777789999999887..68************99887444245679**********************99999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.75 # Mc/sec: 7949.29 // Query: T383224_3 [L=2084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-28 97.2 8.0 3e-26 91.9 3.3 2.1 2 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.9 3.3 1.8e-30 3e-26 1 123 [. 1042 1166 .. 1042 1170 .. 0.97 2 ! 7.7 0.2 7.2e-05 1.2 121 147 .. 1635 1661 .. 1633 1666 .. 0.92 Alignments for each domain: == domain 1 score: 91.9 bits; conditional E-value: 1.8e-30 Tektin 1 Wkanneelykeaeaereeserlrn..esrrlideteektkktqedsnkrLeeRiediefwkeeLekeleelkeeieaLeeekrrlekalealeeplhi 96 W++n +++y++a a+ ++ser + +s++l e+++ ++ tq+ds+ r +eR++d++ w +eL+ e+e+l++e+++L ++k+rle+al+a+e p++i T383224_3 1042 WFQNCYARYHQAFADCNQSERELQghKSQQLAAEIQALAQPTQQDSKCRVGERLQDMHSWNSELQGEVEALAAETDLLLAQKQRLEHALDAMEVPFSI 1139 ********************9764449*********************************************************************** PP Tektin 97 aqeclelRekRqgidlvhDevekeLlk 123 a++++++ ++ q+ +lv+D+ve+eLlk T383224_3 1140 ATDNMQCNQRHQHANLVRDHVETELLK 1166 *************************98 PP == domain 2 score: 7.7 bits; conditional E-value: 7.2e-05 Tektin 121 LlkEveliegvqellkrtleqaeeqlr 147 L +E+eli+++qellkr + qa q+r T383224_3 1635 LPQEAELIRNIQELLKRVIVQAVSQIR 1661 679**********************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.64 # Mc/sec: 9315.58 // Query: T099579_1 [L=1328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 5756.34 // Query: T099579_2 [L=1328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.72 # Mc/sec: 5276.64 // Query: T099579_3 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.67 # Mc/sec: 5666.15 // Query: T165803_1 [L=1170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 5149.49 // Query: T165803_2 [L=1170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 5770.98 // Query: T165803_3 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 5394.05 // Query: T112506_1 [L=1205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 5745.50 // Query: T112506_2 [L=1205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.68 # Mc/sec: 5069.56 // Query: T112506_3 [L=1205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 5842.88 // Query: T337381_1 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-10 38.2 0.0 1.5e-09 37.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.6 0.0 9.2e-14 1.5e-09 159 222 .] 1359 1439 .. 1338 1439 .. 0.87 Alignments for each domain: == domain 1 score: 37.6 bits; conditional E-value: 9.2e-14 ...TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T337381_1 1359 EEVKLSLFADDMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSElpvtiASKRIKYLGIQL 1439 689***************6677***************************99999888776661166778*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 9992.47 // Query: T337381_2 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-37 129.1 0.8 2.6e-37 128.4 0.8 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.4 0.8 1.6e-41 2.6e-37 1 158 [. 1183 1349 .. 1183 1363 .. 0.96 Alignments for each domain: == domain 1 score: 128.4 bits; conditional E-value: 1.6e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++ +gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l T337381_2 1183 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDKVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFML 1280 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++l++++++ + +++i++++ ++++ + +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ T337381_2 1281 KTLNKLGIDGMYLKIIRAIYDKPTADIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEK 1349 ********************************99********************************964 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 627 (0.0384521); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 9484.38 // Query: T337381_3 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-05 21.9 0.0 0.00019 20.9 0.0 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.0 1.2e-08 0.00019 1 19 [] 1906 1924 .. 1906 1924 .. 0.97 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 1.2e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+ M+LE+IILS+ sQ T337381_3 1906 SFVGTRMKLETIILSKLSQ 1924 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.25s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10558.08 // Query: T157171_1 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.60 # Mc/sec: 2398.33 // Query: T157171_2 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2761.80 // Query: T157171_3 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.56 # Mc/sec: 2564.53 // Query: T272690_1 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 4324.07 // Query: T272690_2 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 3996.49 // Query: T272690_3 [L=922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.63 # Mc/sec: 4186.80 // Query: T337114_1 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.7 0.1 27 4.7 0.0 3.2 3 DUF1736 Domain of unknown function (DUF1736) Domain annotation for each model (and alignments): >> DUF1736 Domain of unknown function (DUF1736) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.0032 52 40 65 .. 115 140 .. 113 142 .. 0.91 2 ? 3.0 0.0 0.0058 95 40 65 .. 176 201 .. 175 203 .. 0.91 3 ? 4.7 0.0 0.0017 27 40 69 .. 237 266 .. 236 268 .. 0.93 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0032 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnl 65 fP+ Lc D s ++I i s++ +R++ T337114_1 115 FPRVLCKDSSTNTIVTIASAISTRAV 140 79*****************9998876 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0058 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnl 65 fP+ Lc D s ++I i s++ +R++ T337114_1 176 FPRVLCKDGSTNTIVTIASAISTRAV 201 79*****************9998876 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0017 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnlatll 69 fP+ Lc D s ++I i s++ +R++++++ T337114_1 237 FPRVLCKDGSTNTIVTIVSAISTRAVLSCI 266 79**********************999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.50 # Mc/sec: 4932.07 // Query: T337114_2 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 4566.73 // Query: T337114_3 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.7 8.8 4.2 65 3.7 0.1 3.3 3 PAS_4 PAS fold 3.5 7.7 11.3 14 5.8 0.4 3.3 3 HHV-5_US34A Herpesvirus US34A protein family Domain annotation for each model (and alignments): >> PAS_4 PAS fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.2 0.012 94 59 83 .. 113 137 .. 109 148 .. 0.79 2 ? 3.7 0.1 0.008 65 56 83 .. 171 198 .. 157 209 .. 0.82 3 ? 0.9 0.0 0.057 4.7e+02 57 84 .. 233 260 .. 220 265 .. 0.83 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.012 PAS_4 59 vlegeepiefleelllpgeerhyel 83 ++++++++++++e+++ +erh+ T337114_3 113 AISTRAVQRQQHEHDRHNRERHFHA 137 899*************666666654 PP == domain 2 score: 3.7 bits; conditional E-value: 0.008 PAS_4 56 lrrvlegeepiefleelllpgeerhyel 83 ++ ++++++++++++e+++ +erh+ T337114_3 171 IASAISTRAVQRRQHEHDRHNRERHFHA 198 56799**************666666654 PP == domain 3 score: 0.9 bits; conditional E-value: 0.057 PAS_4 57 rrvlegeepiefleelllpgeerhyelr 84 + +++++++++ ++e+++ +erh+ T337114_3 233 ASAISTRAVQRWQHEHDRHNRERHFHAC 260 67999*************7777777654 PP >> HHV-5_US34A Herpesvirus US34A protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.4 0.0017 14 29 62 .. 114 149 .. 105 151 .. 0.77 2 ? 4.8 0.9 0.0036 29 29 62 .. 175 210 .. 167 212 .. 0.78 3 ? 2.6 0.2 0.017 1.4e+02 29 46 .. 236 253 .. 228 258 .. 0.84 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0017 HHV-5_US34A 29 lftvavqrvkqerdahlr..ryeerlqknrarrrqs 62 + t avqr + e d h r + k ar r s T337114_3 114 ISTRAVQRQQHEHDRHNRerHFHACCAKTAARTRSS 149 6789************86325777788888888876 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0036 HHV-5_US34A 29 lftvavqrvkqerdahlr..ryeerlqknrarrrqs 62 + t avqr + e d h r + k ar r s T337114_3 175 ISTRAVQRRQHEHDRHNRerHFHACCAKTAARTRSS 210 5689************86325777788888888876 PP == domain 3 score: 2.6 bits; conditional E-value: 0.017 HHV-5_US34A 29 lftvavqrvkqerdahlr 46 + t avqr + e d h r T337114_3 236 ISTRAVQRWQHEHDRHNR 253 5689************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 4179.72 // Query: T142860_1 [L=1947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 9440.74 // Query: T142860_2 [L=1947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.75 # Mc/sec: 7426.71 // Query: T142860_3 [L=1947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 9131.21 // Query: T148454_1 [L=1408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 6496.85 // Query: T148454_2 [L=1407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 6492.24 // Query: T148454_3 [L=1407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 6389.19 // Query: T110245_1 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.75 # Mc/sec: 8021.77 // Query: T110245_2 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.70 # Mc/sec: 8590.66 // Query: T110245_3 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 8469.67 // Query: T369097_1 [L=2027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.71 # Mc/sec: 8167.47 // Query: T369097_2 [L=2027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 9060.79 // Query: T369097_3 [L=2027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.9 8.5 5.5 3.8 7.5 5.5 1.4 1 MRP-L28 Mitochondrial ribosomal protein L28 Domain annotation for each model (and alignments): >> MRP-L28 Mitochondrial ribosomal protein L28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 5.5 0.00023 3.8 44 118 .. 141 220 .. 134 226 .. 0.80 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00023 XXXXXXXXXXXXXXX.....XXXXXXXX-HHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHH-HH CS MRP-L28 44 Pveelivplksvdsak...rrqrkllelskeelerrallekqwaryrqq..ekekdeqlirqqleaqeealeeLkkvsee 118 P +l + +s+ +++ + q +ll+l + l+++ l+e +w ++r+ ++d++ + +++e q++al+ L+k+ e T369097_3 141 PTHQLQMLERSLREEElraQHQAALLRLREMALQEKTLAELAWLEHRRGclDSKRDRAVLAALVEKQQQALSRLEKEQRE 220 66666666666666551114566778889999***************9633688999*******************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.81 # Mc/sec: 7159.14 // Query: T111918_1 [L=1724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 6946.58 // Query: T111918_2 [L=1724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 7587.80 // Query: T111918_3 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 6942.55 // Query: T051306_1 [L=2415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 572 (0.0350791); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.68 # Mc/sec: 10160.15 // Query: T051306_2 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.29s 00:00:01.50 Elapsed: 00:00:00.81 # Mc/sec: 8525.98 // Query: T051306_3 [L=2414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 693 (0.0424997); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 9460.33 // Query: T156148_1 [L=3183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 13797.00 // Query: T156148_2 [L=3183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 15975.48 // Query: T156148_3 [L=3182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 15695.11 // Query: T062667_1 [L=5990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.65 # Mc/sec: 26363.65 // Query: T062667_2 [L=5989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.60 # Mc/sec: 28555.85 // Query: T062667_3 [L=5989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.63 # Mc/sec: 27196.05 // Query: T120907_1 [L=5773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.6 0.0 0.047 13.8 0.0 1.8 2 RVP Retroviral aspartyl protease 0.023 14.8 0.0 0.04 14.0 0.0 1.3 1 RNase_H RNase H 0.076 12.4 0.0 0.13 11.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.9 4.9e+03 24 73 .. 390 436 .. 365 441 .. 0.79 2 ? 13.8 0.0 8.6e-06 0.047 7 94 .. 4164 4246 .. 4160 4249 .. 0.94 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.9 BSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE CS RVP 24 AdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrg 73 A +++ +d+P++ ++++ + G++ t + ++ +++ +++++ T120907_1 390 AGLKLLTSSDLPAS---SSQSAEITGVSHHTWPAANNLTCIHISPQNKSR 436 55668999999999...899999*****9999999999899998888876 PP == domain 2 score: 13.8 bits; conditional E-value: 8.6e-06 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEE.EEETTEEEEE..EEEESTTSSSEEE-HHHHC CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaie.vllieekfrgevsplilpelpvnllGrdlLq 94 +++ ++gk + +l+ t A+ + ++ + P + a+ ++ Gi g+ ++ ++ ++ +l++ f + s+ ++p++ v+llGrd L+ T120907_1 4164 VTLTVEGKSVPFLINTEATNSTLPSFQRPVS----FASITVVGIDGQASKPLKTPQL*GQLGQYSFMH--SFSVIPTCAVPLLGRDTLN 4246 78999**************************....999***********99999988989********..****************997 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 7.3e-06 0.04 48 83 .. 4661 4693 .. 4661 4729 .. 0.84 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 7.3e-06 HHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHH CS RNase_H 48 LsAvieaLk.alksdekvniytDSkYvvkgitqwvhr 83 L+A++ aL+ a ++ +vniytDSkY+++ i+ ++h T120907_1 4661 LIALTRALSlA--KGLCVNIYTDSKYAFH-IL-YLHA 4693 789******77..99*************9.55.4555 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2.3e-05 0.13 137 181 .. 3954 3998 .. 3943 3998 .. 0.93 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.3e-05 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ r + rr+t dp+ + + + fi+qs+++i+ T120907_1 3954 YKNPAQFMARWAATLRRFTALDPKRSKGSLILNIHFITQSTPNIK 3998 578***************************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.60 # Mc/sec: 27525.95 // Query: T120907_2 [L=5772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-07 31.9 0.1 7e-07 29.3 0.1 2.1 1 rve Integrase core domain ------ inclusion threshold ------ 0.021 14.9 0.0 0.035 14.2 0.0 1.3 1 RNase_H RNase H 0.082 12.3 0.1 0.16 11.3 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.1 1.3e-10 7e-07 6 118 .. 4880 4988 .. 4877 4989 .. 0.82 Alignments for each domain: == domain 1 score: 29.3 bits; conditional E-value: 1.3e-10 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervl.sDngseytskafreflaelgir.vsftrpgr 101 + wq+D+t+++ + ++ +y+lv++d+f++++ a+++ +e +a +vi l + ++g + + s n +++t + ++++ + gi+ ++ p++ T120907_2 4880 QDWQIDFTHMP--RVRKLKYVLVWVDTFTGWVEAFPTGSE-KATAVISSLLSDIIPQFGL--PASI*SNNRPAFTGQITQAVSQAPGIQ*N-LHTPYH 4971 67*********..55556**********************.6777776666666666664..4788889******8877777777777552.689*** PP rve 102 pqdnGkvErfnrtlkde 118 pq+ kvEr+n++lk++ T120907_2 4972 PQSSEKVERTNGLLKTH 4988 **************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 6.5e-06 0.035 96 142 .. 4706 4757 .. 4689 4758 .. 0.79 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 6.5e-06 SBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 96 kpvknkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 + ++n +l+++l ++a +k+ + h+kgH+ ++gN+ aD++Ak+aa T120907_2 4706 SSIINSSLIKTLLKAALlPKEAGVIHCKGHQKAsdpiAQGNTYADKVAKKAA 4757 358897777766555555************555568889***********98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.1 3e-05 0.16 60 144 .. 4388 4453 .. 4352 4457 .. 0.75 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 3e-05 ..HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHH CS RVT_1 60 kalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfn 144 ++ ++++ ++ + lD+k aF++++l+ +++l+af+ + + + + ++ ++lpqG++ SP f+ T120907_2 4388 NTSLHNPSTTHHSLLDFKHAFFTIHLHPSSQPLFAFTWTVP--------------------DTHQAQQTT*AVLPQGFTDSPHYFS 4453 44456688899************************998733....................1124444446688888888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.63 # Mc/sec: 26210.65 // Query: T120907_3 [L=5772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-05 24.0 2.4 2.5e-05 24.0 2.4 2.9 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 3.5 7.3 11.8 0.12 12.0 2.6 2.8 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 9.1 6.1 8.8 1.1 9.0 3.1 2.4 2 zf-CCHC_2 Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 2.4 4.7e-09 2.5e-05 2 18 .] 4076 4092 .. 4075 4092 .. 0.94 2 ? 1.5 0.3 0.059 3.2e+02 11 17 .. 4107 4113 .. 4107 4114 .. 0.93 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 4.7e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 C++C++ GH+a++Cp+ T120907_3 4076 SCFKCQKSGHWAKECPQ 4092 6***************7 PP == domain 2 score: 1.5 bits; conditional E-value: 0.059 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dCp T120907_3 4107 HWKSDCP 4113 ******9 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 2.6 2.2e-05 0.12 1 18 [. 4073 4090 .. 4073 4092 .. 0.95 2 ? -0.8 2.0 0.22 1.2e+03 5 18 .. 4100 4112 .. 4097 4115 .. 0.74 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.2e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T120907_3 4073 PSGSCFKCQKSGHWAKEC 4090 7999************** PP == domain 2 score: -0.8 bits; conditional E-value: 0.22 -TTT-SSBS-TTT- CS zf-CCHC_5 5 CpRCkkgkHwardC 18 Cp C Hw++dC T120907_3 4100 CPICV-EPHWKSDC 4112 56664.36****** PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 3.1 0.00021 1.1 6 21 .] 4077 4092 .. 4077 4092 .. 0.94 2 ? -1.3 0.3 0.34 1.9e+03 14 21 .] 4107 4114 .. 4105 4114 .. 0.91 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00021 zf-CCHC_2 6 ChiCgkkGHyIqdCPt 21 C C+k GH+ ++CP+ T120907_3 4077 CFKCQKSGHWAKECPQ 4092 888************7 PP == domain 2 score: -1.3 bits; conditional E-value: 0.34 zf-CCHC_2 14 HyIqdCPt 21 H+ +dCPt T120907_3 4107 HWKSDCPT 4114 999****8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.28u 0.38s 00:00:01.66 Elapsed: 00:00:00.62 # Mc/sec: 26633.40 // Query: T337174_1 [L=5758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1817 (0.111431); expected 326.1 (0.02) Passed bias filter: 407 (0.0249601); expected 326.1 (0.02) Passed Vit filter: 331 (0.0202993); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.04u 0.45s 00:00:04.49 Elapsed: 00:00:00.82 # Mc/sec: 20088.61 // Query: T337174_2 [L=5758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1604 (0.0983687); expected 326.1 (0.02) Passed bias filter: 517 (0.0317061); expected 326.1 (0.02) Passed Vit filter: 424 (0.0260027); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.36u 0.44s 00:00:04.80 Elapsed: 00:00:00.90 # Mc/sec: 18302.95 // Query: T337174_3 [L=5757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1452 (0.089047); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 204 (0.0125107); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.95u 0.41s 00:00:03.36 Elapsed: 00:00:00.73 # Mc/sec: 22561.37 // Query: T337153_1 [L=5947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.27s 00:00:01.62 Elapsed: 00:00:00.57 # Mc/sec: 29333.37 // Query: T337153_2 [L=5947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.25u 0.42s 00:00:02.67 Elapsed: 00:00:00.72 # Mc/sec: 23629.66 // Query: T337153_3 [L=5947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.34s 00:00:01.65 Elapsed: 00:00:00.61 # Mc/sec: 27890.75 // Query: T188420_1 [L=3821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.60 # Mc/sec: 18218.72 // Query: T188420_2 [L=3820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.59 # Mc/sec: 18522.66 // Query: T188420_3 [L=3820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.57 # Mc/sec: 18842.02 // Query: T352999_1 [L=1784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 9279.49 // Query: T352999_2 [L=1784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 9629.66 // Query: T352999_3 [L=1783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 9446.04 // Query: T374596_1 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.072 13.1 0.0 0.12 12.4 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 7.5e-06 0.12 25 106 .. 1140 1216 .. 1123 1219 .. 0.80 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7.5e-06 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374596_1 1140 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 1216 469******977.5555555556667788888887774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 8820.89 // Query: T374596_2 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 8655.31 // Query: T374596_3 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-07 30.9 0.0 2.5e-07 30.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 1.6e-11 2.5e-07 124 204 .. 403 483 .. 391 486 .. 0.93 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 1.6e-11 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204 +++y++++lpqG+++SP++f ++ + l+++ +r g +ll+Y+D +l+ + + + ++++ +l+++++k++++ + T374596_3 403 TTQYTWTRLPQGFKNSPTIFREALARDLQKIPTRDLGFVLLQYVDNFLLGHPMAVMCAKGMDTLLWHLEDYRYKVSKKEAQ 483 678************************************************************************987555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 8500.75 // Query: T295453_1 [L=171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 79 (0.00484484); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.52 # Mc/sec: 940.77 // Query: T295453_2 [L=171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-10 41.3 3.3 1.5e-10 40.8 3.3 1.2 1 BAGE B melanoma antigen family Domain annotation for each model (and alignments): >> BAGE B melanoma antigen family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.8 3.3 9.5e-15 1.5e-10 5 28 .] 82 105 .. 79 105 .. 0.96 Alignments for each domain: == domain 1 score: 40.8 bits; conditional E-value: 9.5e-15 BAGE 5 GvmLAASAQALEAkLskeDLPvLA 28 +v+LA+SAQ+L+A+L+ke++Pv++ T295453_2 82 AVFLALSAQLLQARLMKEESPVVS 105 7*********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.54 # Mc/sec: 905.93 // Query: T295453_3 [L=171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.59 # Mc/sec: 829.16 // Query: T048064_1 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 8959.39 // Query: T048064_2 [L=1973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.66 # Mc/sec: 8552.15 // Query: T048064_3 [L=1972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1972 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 8420.23 // Query: T316833_1 [L=7652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 514 (0.0315221); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.40s 00:00:02.88 Elapsed: 00:00:01.01 # Mc/sec: 21674.33 // Query: T316833_2 [L=7651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 491 (0.0301116); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.49u 0.45s 00:00:02.94 Elapsed: 00:00:00.93 # Mc/sec: 23535.71 // Query: T316833_3 [L=7651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.53u 0.41s 00:00:02.94 Elapsed: 00:00:00.84 # Mc/sec: 26057.39 // Query: T223095_1 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-18 64.7 28.0 0.22 11.5 0.1 16.4 18 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 0.7 1.1e+04 3 31 .. 16 44 .. 12 49 .. 0.48 2 ! 7.6 0.0 0.00023 3.8 6 68 .. 69 131 .. 64 141 .. 0.84 3 ! 7.3 0.0 0.00029 4.8 28 74 .. 298 344 .. 283 348 .. 0.80 4 ? 0.7 0.1 0.032 5.3e+02 8 59 .. 328 395 .. 323 407 .. 0.39 5 ? 1.5 0.6 0.018 3e+02 31 61 .. 443 473 .. 412 525 .. 0.53 6 ? 1.9 0.0 0.013 2.2e+02 13 59 .. 513 564 .. 504 580 .. 0.88 7 ? -0.1 0.0 0.056 9.1e+02 18 68 .. 553 603 .. 538 618 .. 0.57 8 ! 8.9 0.0 9e-05 1.5 8 77 .] 643 713 .. 621 715 .. 0.66 9 ! 9.8 0.1 4.6e-05 0.74 13 69 .. 753 809 .. 738 826 .. 0.51 10 ! 4.9 0.1 0.0016 27 3 68 .. 818 883 .. 808 890 .. 0.83 11 ? 1.5 0.0 0.019 3e+02 34 66 .. 904 936 .. 893 955 .. 0.50 12 ? 1.8 0.0 0.015 2.5e+02 33 55 .. 976 998 .. 961 1004 .. 0.41 13 ! 2.9 0.1 0.0066 1.1e+02 13 68 .. 1036 1091 .. 1021 1101 .. 0.57 14 ! 2.8 0.0 0.0074 1.2e+02 21 68 .. 1154 1191 .. 1137 1199 .. 0.41 15 ? -2.2 0.1 0.25 4.1e+03 8 33 .. 1262 1287 .. 1248 1322 .. 0.57 16 ? 2.1 0.1 0.012 1.9e+02 18 44 .. 1332 1358 .. 1325 1434 .. 0.53 17 ? -2.2 0.1 0.27 4.3e+03 8 33 .. 1473 1498 .. 1463 1515 .. 0.50 18 ! 11.5 0.1 1.4e-05 0.22 12 69 .. 1615 1682 .. 1610 1690 .. 0.64 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 0.7 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFtea 31 F+++ f+ ++ + F ++ ++ +F+++ T223095_1 16 FHSSPFHSNPFHCIPFHSSPFHIIQFESI 44 44444444444444444444444444444 PP == domain 2 score: 7.6 bits; conditional E-value: 0.00023 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 sf+ ++++ F ++ +++ +++++ ++ F+++ +++ f + l +++F+ +++ ++ f T223095_1 69 ISFHSILFHTIPFHSIPFESIPLQSIRGHSIAFHSSPFHSIPFHYILLDSIPFQSSQFYSIPF 131 5777788888888888888888888888999************************99987766 PP == domain 3 score: 7.3 bits; conditional E-value: 0.00029 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsgklkd 74 F++++++ F++ +++ +f+ + + +++F+ + + +++f+ l++ T223095_1 298 FESIQFNCIPFESIQIHYIKFQSIPFHSIPFHLSPFHSITFHSILVH 344 77788888889999999999999999999999999999999877665 PP == domain 4 score: 0.7 bits; conditional E-value: 0.032 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl...........snvn.....FdkcllsdvdfaeadlkrasFs 59 f+ + ++ ++F ++ ++ +F +l +++ F+++ ++++ f + + +++F+ T223095_1 328 FHLSPFHSITFHSILVHSNRFIPLHLspfnsilfiriHSTPllsspFHSTPFHSTPFHFIPFEDIPFH 395 55555555555555555555544444333222222221111222223333333333333333333333 PP == domain 5 score: 1.5 bits; conditional E-value: 0.018 Pentapeptide_4 31 anlsnvnFdkcllsdvdfaeadlkrasFsgc 61 +++++++F++ +++ ++ +++ +++F+ + T223095_1 443 SPFHSCTFHSLCVQSNPLYFIRVHSIPFHSS 473 3333333333333333333333333333322 PP == domain 6 score: 1.9 bits; conditional E-value: 0.013 Pentapeptide_4 13 lsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFs 59 ++ ++F+++r + F+++++ + F+++++++ + + + +++F+ T223095_1 513 FESITFNSIRVHCMPFESVPFh*ipvESIQFHSTQVHSIPIHSIPFHSIPFH 564 778899999999999999999**9999999********99999999999987 PP == domain 7 score: -0.1 bits; conditional E-value: 0.056 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 ++ +++ F +++ + + Fd+ l++ f + l +++F+ + ++ + T223095_1 553 IHSIPFHSIPFHSIPSHPTAFDSFPLRSFPFISVPLYSIPFESIPFHSIPI 603 333344444444444477777777777777777777777777655555444 PP == domain 8 score: 8.9 bits; conditional E-value: 9e-05 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 f+ + ++ + F ++ l ++ + +++++ + ++ +++++ ++ +++ +++F+ ++ f+ +++++F T223095_1 643 FHSSSFHSIPFHSIPLYSTPLHLSPFHSIRVHSIQIHSSPLNSNQFHSSPFHSIRVHSIPFHSsPFHRISF 713 55555555555555555555555555666666666666666666666666666666666664435666655 PP == domain 9 score: 9.8 bits; conditional E-value: 4.6e-05 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 ++ + F ++ +++ F+++++++ F+ +++++ f + + +++F+ + + f+ T223095_1 753 FHSIPFHSIPFHSIAFESIPFHSNPFETNKFHSIPFHSIPFHSIPFHSFRVHSNPFK 809 444445555555555555555555555555555555555555555544444433333 PP == domain 10 score: 4.9 bits; conditional E-value: 0.0016 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 F++ f + ++ + F + +++ + + +++ +F++ ll+ + f ++ + +++F+ + + ++ f T223095_1 818 FHSIPFQTVLCHAIPFDCIPFHSIRVHSNSFHYISFHSILLNLCPFPPIAFESIPFHFFPFHSIPF 883 555566666777777777788888888889999***********************9988777666 PP == domain 11 score: 1.5 bits; conditional E-value: 0.019 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknv 66 + +F++ l+++ f + + +++F ++ ++ T223095_1 904 ESIVFHSILFESIPFHSIPFLSTPFYSITFHSI 936 333344444444444444444444443333333 PP == domain 12 score: 1.8 bits; conditional E-value: 0.015 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlkr 55 ++ F+++ +++ +f+ + + + T223095_1 976 FDTFPFHSSPFHSIQFESITFYY 998 33333333333333333333333 PP == domain 13 score: 2.9 bits; conditional E-value: 0.0066 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 ++ + F+ +++ F+++ l++ F++ +++ + ++++ +sF+ l + f T223095_1 1036 FHSTLFNFPPFHSIPFVSISLHSIPFESIPFHSIPCESIQFRCISFHSIRLHSFPF 1091 44444444445555555555555555555555555555555555555555554444 PP == domain 14 score: 2.8 bits; conditional E-value: 0.0074 Pentapeptide_4 21 arlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 + ++++ F+++l++ ++ + + +++F + ++ f T223095_1 1154 S----------PFHSIQFHSSLFHYIPLESNPFLSIPFDSIPFHSSPF 1191 3..........3333333333333333333333333333333333333 PP == domain 15 score: -2.2 bits; conditional E-value: 0.25 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl 33 f+ + ++ + + ++ +++++F+ +++ T223095_1 1262 FLWSPFHSILLHSIPIHSSQFRRIPF 1287 33333344444444444444444444 PP == domain 16 score: 2.1 bits; conditional E-value: 0.012 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkclls 44 F++++l++ F++++l+ ++F++ ls T223095_1 1332 FESIKLHSIPFESIPLHLTKFHSFPLS 1358 444444444444444444444433322 PP == domain 17 score: -2.2 bits; conditional E-value: 0.27 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl 33 f ++ + + F+++r ++ + +++++ T223095_1 1473 FRSAQVHSIPFNSNRVHSIRVRSIPF 1498 33333333334444433333333333 PP == domain 18 score: 11.5 bits; conditional E-value: 1.4e-05 Pentapeptide_4 12 klsnvnFsearlkdcnFteanl..........snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 +++ F+++ +++ +F+++++ +++ F++ ++++ f +++ +++F+ + +k++ f+ T223095_1 1615 QFHSKPFESFPFHSNTFESIPFhtnpliciplHSCPFHSIQFESIPFHSIQVHSIQFHSFPFKSIPFH 1682 45555555555555555555555555555555777777777777777777777777777777776664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 7189.94 // Query: T223095_2 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-25 88.3 25.9 0.012 15.5 0.0 16.7 17 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.1 0.019 3.1e+02 14 67 .. 25 93 .. 12 115 .. 0.71 2 ? -1.3 0.0 0.14 2.2e+03 22 59 .. 128 165 .. 117 170 .. 0.50 3 ? 2.0 0.0 0.012 2e+02 23 66 .. 266 309 .. 250 315 .. 0.53 4 ! 8.0 0.0 0.00017 2.7 2 49 .. 381 428 .. 380 473 .. 0.70 5 ! 8.5 0.0 0.00012 2 13 69 .. 506 562 .. 505 569 .. 0.83 6 ! 15.5 0.0 7.6e-07 0.012 3 61 .. 576 634 .. 574 650 .. 0.90 7 ! 5.2 0.0 0.0013 21 5 64 .. 703 762 .. 699 778 .. 0.56 8 ! 4.7 0.0 0.0019 30 3 59 .. 786 842 .. 754 853 .. 0.71 9 ! 4.5 0.0 0.0022 35 8 77 .] 831 911 .. 825 911 .. 0.90 10 ! 4.5 0.1 0.0021 35 3 59 .. 964 1035 .. 953 1043 .. 0.55 11 ! 9.8 0.1 4.6e-05 0.75 18 77 .] 1009 1069 .. 987 1069 .. 0.86 12 ! 12.8 0.3 5.4e-06 0.088 8 60 .. 1014 1091 .. 1008 1106 .. 0.50 13 ! 7.1 2.0 0.00033 5.4 3 77 .] 1064 1139 .. 1063 1173 .. 0.80 14 ! 10.4 0.3 3e-05 0.49 7 68 .. 1279 1340 .. 1273 1347 .. 0.61 15 ! 4.0 0.0 0.0031 50 23 68 .. 1451 1496 .. 1416 1503 .. 0.49 16 ! 2.8 0.0 0.0073 1.2e+02 13 63 .. 1544 1599 .. 1533 1603 .. 0.48 17 ! 2.9 0.3 0.0068 1.1e+02 39 65 .. 1650 1676 .. 1620 1690 .. 0.46 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.019 Pentapeptide_4 14 snvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkrasFsgcdlknvn 67 + + F ++r ++ F+++++ ++ +F ++ +++ f+ + + +++F+ +++ + T223095_2 25 HFIAFHSIRVHSILFSSSPFh*ipfl*isfhsf*iHSISFPSSPFHSIPFYSIPFLSIPFHSSQFHCNP 93 555666666666666777777777777777777777788888888888888888888888888886554 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 Pentapeptide_4 22 rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 ++++ F +++++ F+++ ++ f+ + + +++F+ T223095_2 128 PFHSSLFHCIPFVSIPFHSSPFHYILFECIPFHSIPFH 165 44444455555555555555555555555555555554 PP == domain 3 score: 2.0 bits; conditional E-value: 0.012 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknv 66 ++++ F+++++++ ++ l+++ f +++ +++F + ++ T223095_2 266 FEGTPFNSSPFHSIPVESILFDSIPFLAIQFLSSPFNSIAFHSS 309 34444444444444444555555555555555554444444443 PP == domain 4 score: 8.0 bits; conditional E-value: 0.00017 Pentapeptide_4 2 dFtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfa 49 ++++ sf+ +++ + F+++r+++ F+++++++ F++ l++ + T223095_2 381 RLHSISFHSRTFHSIPFYSIRFHSILFESIPFHSSPFHSFPLESIPIH 428 567788888889999999999999888888887776666555554444 PP == domain 5 score: 8.5 bits; conditional E-value: 0.00012 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 ++ ++F ++ l++ F+++ ++ F++ +++++ f+ + l++++F+ + ++ f+ T223095_2 506 FHSITFHSSPLHSILFEYIACHLSPFHSIKFQSSPFNSIPLRSIPFQSIPFHSIPFH 562 889999999999999999999999999999999999999999999998777776665 PP == domain 6 score: 15.5 bits; conditional E-value: 7.6e-07 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgc 61 F+ + f+ +++++ F+++ +++ +F+++++++ F++ l++ ++ + + +++F+ T223095_2 576 FRYVLFHSFQFHYIRFRSSPFHSIQFQSIPFHSIPFESIPLRSIRVHSIPFDSIPFESI 634 77889999*************************************99999999999865 PP == domain 7 score: 5.2 bits; conditional E-value: 0.0013 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 + + +++ + +++++l+ +F+++++ + +F++ l++ + + + + +++F+ + T223095_2 703 SIRVHSIAFHSIPYESIKLHCIQFKSIPFYSIRFHSVPLHSIQGNSMPFHSIPFHSIPFH 762 555556667777777776776777777775555555555555555555555555443333 PP == domain 8 score: 4.7 bits; conditional E-value: 0.0019 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 F++ f+ ++ + F+++ +++++F +++++ F++ l+ f + + +++F+ T223095_2 786 FHSIPFHSIPFHSILFESILIHSSQFHFIPFHSIPFHSKLFYAMPFHLTAFHSIPFE 842 555566666677777777777777777777777777777777776666666666666 PP == domain 9 score: 4.5 bits; conditional E-value: 0.0022 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl..........snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkdadF 77 f+ ++++ + F+++ +++ +++++++ ++ F++ ++++ f + l +++F+ + + + f s+ l+++ F T223095_2 831 FHLTAFHSIPFESIPIHSITLVSIPFy*icvlslplHSSPFHSISFHSIPFHFIPLETIPFHSSPFHTFPFhSNPLYSIPF 911 8999***************************999999999***********************999999994458988765 PP == domain 10 score: 4.5 bits; conditional E-value: 0.0021 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkrasFs 59 F+++ f+ ++ + F ++r ++ F++++l ++ F+ c++++ f + + ++sF+ T223095_2 964 FHWSPFHSILFHSIPFLSIRVHSIPFSSSPLlsitlhcitfecipfHYIPFHLCSFHSIPFKFIPFHSISFH 1035 566666666666666666655555555555555444222222222255555555555555555555555554 PP == domain 11 score: 9.8 bits; conditional E-value: 4.6e-05 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkdadF 77 F + ++ c+F +++++ F++ ++++ ++ +++ +++F+ + + ++ f s+ +++++F T223095_2 1009 FHYIPFHLCSFHSIPFKFIPFHSISFHSIPLYSTSPHSIPFHSSPFHCIPFhSNPFHSIQF 1069 55557899*******************************************4459**9998 PP == domain 12 score: 12.8 bits; conditional E-value: 5.4e-06 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanl.........................snvnFdkcllsdvdfaeadlkrasFsg 60 f+ c ++ + F+ + +++ +F +++l ++ F+ +l+++v f ++l +++F+ T223095_2 1014 FHLCSFHSIPFKFIPFHSISFHSIPLystsphsipfhsspfhcipfhsnpfHSIQFHASLFNSVAFHSIQLGSIPFHF 1091 666666666666666666666666665544422222222222222232222555555555555555555555555555 PP == domain 13 score: 7.1 bits; conditional E-value: 0.00033 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdadF 77 F++ +f+++ ++ v F +++l + F +++ + +F++ ++ f+ + +++++ ++++ f+ +++++F T223095_2 1064 FHSIQFHASLFNSVAFHSIQLGSIPFHFIPFASITFHSYGVHYFPFYSGPFHSIPIHSIAFECIPFHSiAFESIQF 1139 6666777777777777777777777777777888888888888888888888888888888888887656777776 PP == domain 14 score: 10.4 bits; conditional E-value: 3e-05 Pentapeptide_4 7 sfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 n + ++ + F+++++ + F+++ +++ F++ +++ f +++ +++F+ + l+++ f T223095_2 1279 RVNSVVFHSFPFESIQFPSNPFESTLFHSSPFKSIPFHSIPFKSIKFHSIPFHSSPLNCTPF 1340 45555666666666666666666666666666666666666666666666666666666655 PP == domain 15 score: 4.0 bits; conditional E-value: 0.0031 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 +++ F ++ ++ F++c +++v + + + +++++ +++v f T223095_2 1451 FHSFPFHCIRVHAIPFHSCPFHSVLLKSIPFHSIPIESIPFESVPF 1496 3333333333344446666666666666666666555555555544 PP == domain 16 score: 2.8 bits; conditional E-value: 0.0073 Pentapeptide_4 13 lsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdl 63 ++ +F + ++++++ ++++ ++ F++ ++ f+ + +++++F+ + T223095_2 1544 FHSRSFHCISFHSSTLYYIPFesipsHSIPFRSVPFEFIPFESIPFTSIAFHSISF 1599 44444444445555555555522221555555555555555555555555544433 PP == domain 17 score: 2.9 bits; conditional E-value: 0.0068 Pentapeptide_4 39 dkcllsdvdfaeadlkrasFsgcdlkn 65 ++ +++++ f + +k+++F + + T223095_2 1650 HSIQFNSSPFHSIPFKSIPFNSILFHS 1676 222222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 7085.74 // Query: T223095_3 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-23 82.9 22.7 1.9 8.6 0.1 17.4 16 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.5 0.1 0.001 16 17 70 .. 6 59 .. 2 114 .. 0.81 2 ! 7.1 0.1 0.00033 5.3 3 43 .. 137 177 .. 135 202 .. 0.90 3 ? -0.4 0.0 0.071 1.2e+03 7 34 .. 226 260 .. 223 311 .. 0.62 4 ! 7.2 0.1 0.0003 4.8 8 69 .. 284 346 .. 277 357 .. 0.72 5 ! 6.2 0.0 0.00064 10 13 61 .. 324 388 .. 314 405 .. 0.60 6 ? 0.6 0.0 0.036 5.9e+02 8 48 .. 365 405 .. 359 420 .. 0.47 7 ? 1.5 0.0 0.019 3e+02 33 59 .. 456 482 .. 433 495 .. 0.44 8 ! 4.8 0.1 0.0017 28 5 59 .. 576 630 .. 574 644 .. 0.66 9 ! 5.5 0.1 0.001 17 3 40 .. 639 676 .. 637 708 .. 0.58 10 ! 4.8 0.0 0.0017 28 8 59 .. 724 775 .. 717 778 .. 0.88 11 ! 6.1 0.0 0.00065 11 3 58 .. 1022 1077 .. 1020 1082 .. 0.91 12 ! 8.5 0.0 0.00012 1.9 21 61 .. 1120 1165 .. 1100 1202 .. 0.49 13 ! 5.7 0.0 0.00087 14 6 68 .. 1208 1268 .. 1200 1281 .. 0.79 14 ! 3.3 0.0 0.0049 81 28 60 .. 1371 1403 .. 1360 1411 .. 0.70 15 ! 8.6 0.1 0.00011 1.9 7 58 .. 1453 1504 .. 1433 1507 .. 0.55 16 ! 5.7 0.0 0.00093 15 7 76 .. 1596 1681 .. 1560 1693 .. 0.66 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.001 Pentapeptide_4 17 nFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 F +++l++ F+++++++ ++++ +++ + +++ +++F+ + + ++ f+ T223095_3 6 PFHSNTLHSIPFESIPFKSISLHSIPFESIPYYSVRVHSIRFHSFRFHSTPFES 59 567777777777777777777777777777777777777777777777777754 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00033 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcll 43 F++c f+ + ++F+++ +++ F ++++++++ ++ ll T223095_3 137 FHSCPFHSIRVHSITFYSSAFHSILFHSIPAHSTSVHSILL 177 9****************************999988776555 PP == domain 3 score: -0.4 bits; conditional E-value: 0.071 Pentapeptide_4 7 sfnncklsnvnFsearlkdcnFteanl.......s 34 f+ + ++ + F+++ ++ + F++++ T223095_3 226 PFHLSPFHSSPFYSSPFHPSPFRYIPYsipleliP 260 57788899999999999999999987755555552 PP == domain 4 score: 7.2 bits; conditional E-value: 0.0003 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.s 69 f ++ + F+++r ++ ++ +++ ++ +++k +++ +f + + ++sF+ + ++ f s T223095_3 284 FYSIPFHSLPFNSFRVHSIQLHSIRVHSNTLHKIPIHSISFHSIPFESISFHYISFHSSPFqS 346 566668888899999999999999998888888888888888888888888877777777744 PP == domain 5 score: 6.2 bits; conditional E-value: 0.00064 Pentapeptide_4 13 lsnvnFsearlkdcnFteanlsnvn................FdkcllsdvdfaeadlkrasFsgc 61 ++ + F+++ ++ +F ++++++v+ F+++ +++ f+ + + +++F+ T223095_3 324 FHSIPFESISFHYISFHSSPFQSVHstpfesiqfhpfysnpFHSTPFESIPFYSIPFDSIPFHSI 388 44444555555555555555544444444444444433445888888888888888877777765 PP == domain 6 score: 0.6 bits; conditional E-value: 0.036 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdf 48 f+ + ++ + F+++ + + F +++ ++ F++ +++ f T223095_3 365 FHSTPFESIPFYSIPFDSIPFHSIRGHSIPFHSIRFDSIPF 405 33333333344444444444444444444444433333333 PP == domain 7 score: 1.5 bits; conditional E-value: 0.019 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlkrasFs 59 +++ F+++ +++ f+ + + + sF+ T223095_3 456 IKSIIFHSSPFHSIPFESIPFHSNSFH 482 333333333333333333333333332 PP == domain 8 score: 4.8 bits; conditional E-value: 0.0017 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 +++f +s + F ++r ++ F++ +++ F+++ ++ v ++ + + +++F+ T223095_3 576 SVTFFSIHFSSIIFDSVRVHSIPFNSNRFHFIPFHSSPFHYVPLESIPFHSIPFH 630 5566666666666666666666666666666667777777777776666666665 PP == domain 9 score: 5.5 bits; conditional E-value: 0.001 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdk 40 F++ f+ + ++ + F+++ +++ +F+++++++ F + T223095_3 639 FHSIPFEFVPFHSIPFYSIIFHSITFESIPFHSSAFYS 676 55556666667777777777777777777776655433 PP == domain 10 score: 4.8 bits; conditional E-value: 0.0017 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 fn + ++ + + ++ +++++F+++++++ F++ +++ f +++ +++F+ T223095_3 724 FNSSPFHSIPLDSIPFHSTRFRAIPCHSIPFHSIPFHSIPFHCIRVHSIPFQ 775 8889999999999999999999999999999999999999999999999998 PP == domain 11 score: 6.1 bits; conditional E-value: 0.00065 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 F+++sf+ +++ + F ++l F +++l+ F++ +++ f+ +++ ++++ T223095_3 1022 FHSSSFHSIQFHSIPFHFIQLPPIPFHSIRLHFIAFHSIRIHSIPFNSMRVYSIPL 1077 9999**************************************99999999888765 PP == domain 12 score: 8.5 bits; conditional E-value: 0.00012 Pentapeptide_4 21 arlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgc 61 + l+++ F +++l ++ +F + l++ f+ + + ++sF+ T223095_3 1120 IPLHSSAFHSIPLhlspfNSISFISVPLHSILFESIPFHSISFESI 1165 4444444444444444443333333333333333333333333332 PP == domain 13 score: 5.7 bits; conditional E-value: 0.00087 Pentapeptide_4 6 csfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 + fn ++ +F ++ +k+ + ++++++ F++ +++ +f++ + +++F+ l+++ f T223095_3 1208 SAFNSIPFHSNTFFSIPFKNLPLHAIPFKSIPFHSIQVHPIQFYP--FESIPFHSIPLESIPF 1268 568888899999999999999999999999999999999999997..5666676666666666 PP == domain 14 score: 3.3 bits; conditional E-value: 0.0049 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 F +++l+++ Fd++ +++ f+ + + +++F+ T223095_3 1371 FHSSPLHYTPFDSSPFNSIPFQSNAFHSIPFES 1403 566667777777777777777777777777764 PP == domain 15 score: 8.6 bits; conditional E-value: 0.00011 Pentapeptide_4 7 sfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 f+ +++ + F +++ ++ F ++++++ F+++ ++++ f +++ +++F T223095_3 1453 PFHSIAFESMPFLSIHVHSIPFCSSPFHSIQFQSSPFHSSPFHSIQFLSSPF 1504 3444455555555555555555555556666666666666666666665555 PP == domain 16 score: 5.7 bits; conditional E-value: 0.00093 Pentapeptide_4 7 sfnncklsnvnFsearlkdcnFteanl...............snvnFdkcllsdvdfaeadlkrasFsgcdlknvnf.sgklkdad 76 f+ + +++++F ++r ++ F+ ++ + n++++ + + f+ +++ +++F+ + + ++ f s + ++++ T223095_3 1596 PFHSSPFHRISFLSFRVHSIPFQTIRVisipfqyi*vhsipyESINLHSTPFVSIPFNSIRVHSIPFHSSPFHSIPFfSIQVHSIS 1681 46666666666666666666666666666666666666666666666666666666666666666666666665555333555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 7185.73 // Query: T336135_1 [L=564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 2602.43 // Query: T336135_2 [L=564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 2482.32 // Query: T336135_3 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 2477.92 // Query: T126477_1 [L=1177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 5611.99 // Query: T126477_2 [L=1176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 5175.90 // Query: T126477_3 [L=1176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.71 # Mc/sec: 4738.50 // Query: T291393_1 [L=1316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.78 # Mc/sec: 4826.73 // Query: T291393_2 [L=1316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.73 # Mc/sec: 5157.33 // Query: T291393_3 [L=1316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.74 # Mc/sec: 5087.64 // Query: T277787_1 [L=1052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 4777.13 // Query: T277787_2 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.74 # Mc/sec: 4063.15 // Query: T277787_3 [L=1051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 4357.58 // Query: T235726_1 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.66 # Mc/sec: 2787.14 // Query: T235726_2 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.71 # Mc/sec: 2590.86 // Query: T235726_3 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.69 # Mc/sec: 2665.96 // Query: T159804_1 [L=3771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0059 16.0 0.0 0.01 15.2 0.0 1.3 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.081 13.1 0.0 0.15 12.2 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 1.2e-06 0.01 138 181 .. 1665 1708 .. 1658 1708 .. 0.94 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 1.2e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa +i+ T159804_1 1665 KNPAPFMARLAATLRRFTALDPKRSKGRLILNIHFITQSALNIK 1708 689*************************************9996 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 1.8e-05 0.15 77 100 .. 1942 1965 .. 1940 1966 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.8e-05 EEESTTSSSEEE-HHHHCCCT-EE CS RVP 77 plilpelpvnllGrdlLqklgvrL 100 +l++p++pv+llGrd L+kl + L T159804_1 1942 LLVIPTCPVPLLGRDTLTKLSASL 1965 6899****************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.58u 0.36s 00:00:01.94 Elapsed: 00:00:00.79 # Mc/sec: 13655.94 // Query: T159804_2 [L=3771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.67 # Mc/sec: 16101.78 // Query: T159804_3 [L=3770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-05 24.6 3.9 4.2e-05 23.3 3.9 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.11 11.8 0.0 0.19 11.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 2.1 8.0 9.1 5.9 6.6 2.8 2.8 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 3.9 7.8e-09 4.2e-05 2 18 .] 1784 1800 .. 1783 1800 .. 0.94 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 7.8e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T159804_3 1784 ACYKCQKSGHQAKECPQ 1800 7***************7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 3.5e-05 0.19 69 100 .. 2107 2138 .. 2093 2165 .. 0.79 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 3.5e-05 -EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 69 klllklDlkkaFdsvpleellrkltafkvptk 100 +++ lDlk aF+++pl+ +++l+af+ ++ T159804_3 2107 IHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP 2138 68899**********************98766 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 2.8 0.0011 5.9 1 18 [. 1781 1798 .. 1781 1800 .. 0.96 2 ? 4.3 0.5 0.0053 29 1 17 [. 1804 1819 .. 1804 1832 .. 0.90 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0011 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k H a++C T159804_3 1781 PPGACYKCQKSGHQAKEC 1798 89**************** PP == domain 2 score: 4.3 bits; conditional E-value: 0.0053 ---B-TTT-SSBS-TTT CS zf-CCHC_5 1 ppglCpRCkkgkHward 17 pp lCp C g Hw++d T159804_3 1804 PPKLCPICA-GPHWKSD 1819 799*****6.*****99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:00.69 # Mc/sec: 15630.91 // Query: T368600_1 [L=7062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.38s 00:00:02.58 Elapsed: 00:00:00.72 # Mc/sec: 28059.97 // Query: T368600_2 [L=7062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 540 (0.0331166); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.41s 00:00:02.78 Elapsed: 00:00:00.84 # Mc/sec: 24051.41 // Query: T368600_3 [L=7062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.44s 00:00:02.85 Elapsed: 00:00:00.81 # Mc/sec: 24942.20 // Query: T369023_1 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.66 # Mc/sec: 5288.20 // Query: T369023_2 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 5058.28 // Query: T369023_3 [L=1220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1220 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 5817.02 // Query: T142997_1 [L=710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 3563.49 // Query: T142997_2 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 3325.13 // Query: T142997_3 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 3219.57 // Query: T315889_1 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.59 # Mc/sec: 16175.81 // Query: T315889_2 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.68 # Mc/sec: 14034.90 // Query: T315889_3 [L=3335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.69 # Mc/sec: 13827.34 // Query: T368496_1 [L=1084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 4845.53 // Query: T368496_2 [L=1084] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1084 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 5346.79 // Query: T368496_3 [L=1083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1083 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 456 (0.0279652); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 4694.36 // Query: T026965_1 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.2 8.7 8.0 5.9 7.9 8.0 1.4 1 Pheromone Fungal mating-type pheromone Domain annotation for each model (and alignments): >> Pheromone Fungal mating-type pheromone # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 8.0 0.00036 5.9 10 39 .. 1091 1124 .. 1066 1127 .. 0.66 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00036 Pheromone 10 l....asssssaessesalfasssspspspalss 39 l +sssss++ss+s+++ sssspspsp++s+ T026965_1 1091 LllllSSSSSSSSSSSSSSSSSSSSPSPSPSPSP 1124 0454456666666666666666666666665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 577 (0.0353857); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.78 # Mc/sec: 7291.45 // Query: T026965_2 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 8363.72 // Query: T026965_3 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.056 14.0 5.1 0.092 13.3 5.1 1.2 1 Pex14_N Peroxisomal membrane anchor protein (Pex14p) co Domain annotation for each model (and alignments): >> Pex14_N Peroxisomal membrane anchor protein (Pex14p) conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 5.1 5.7e-06 0.092 52 127 .. 1033 1101 .. 1016 1114 .. 0.36 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 5.7e-06 Pex14_N 52 asaaevaassas.....sasssatpqpqassqtsqsspspsppaaqqqqqyrppivtypefltkpakppppPlrtwrdlli 127 + ++ s s+sss+++++++ss++s++spspsp+++ ++++ pp p ++ ppppP + +++ T026965_3 1033 S-----SS---SsssssSSSSSSSSSSSSSSSSSSPSPSPSPSPSPSPSS-PPPSPSSP---PPSPSPPPPPSPFFFLFFF 1101 1.....11...111111122222222222222222222222222222222.23433333...2345555666555554444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1027 (0.062983); expected 326.1 (0.02) Passed bias filter: 380 (0.0233043); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.72u 0.35s 00:00:02.06 Elapsed: 00:00:00.67 # Mc/sec: 8488.55 // Query: T367397_1 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 11911.46 // Query: T367397_2 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.33s 00:00:01.68 Elapsed: 00:00:00.83 # Mc/sec: 9471.76 // Query: T367397_3 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 13792.21 // Query: T317446_1 [L=222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.50 # Mc/sec: 1270.21 // Query: T317446_2 [L=222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 1323.13 // Query: T317446_3 [L=222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 1323.13 // Query: T336747_1 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-13 50.7 0.1 2.4e-13 49.9 0.1 1.4 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 0.1 1.5e-17 2.4e-13 25 128 .. 1155 1259 .. 1155 1265 .. 0.87 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 1.5e-17 DDE_1 25 kgksprafknektkkkldveyksnrkawltssifee.WLekvfdkrve.....kaekrkv.lLllddsrshe.tvelsecelqniklvflPasstsll 114 ++k+pr kn + k+ l++ yk++ kaw+t+++f+ + +f+ +e k+ +k+ l l+d++++h+ + +l +++++++++ Pa++ts+l T336747_1 1155 HSKNPRDLKN-YAKSILPMPYKWTHKAWMTAHLFTS*FT-GYFKFLIEt*yseKKIPSKI*L-LIDNAPGHPrALTL---MYKEVHVFM-PANTTSIL 1245 589*******.**********************998876.7777777777655666666565.57*******99999...*****9765.******** PP DDE_1 115 qPldqgvvselKar 128 qP+dqgv+ ++K++ T336747_1 1246 QPMDQGVILTFKSY 1259 ************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 8361.18 // Query: T336747_2 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 8206.34 // Query: T336747_3 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 510 (0.0312768); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.53 # Mc/sec: 8361.18 // Query: T300730_1 [L=567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3244.18 // Query: T300730_2 [L=567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 3244.18 // Query: T300730_3 [L=567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-05 22.5 0.3 0.0014 18.6 0.1 2.5 2 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.1 8.4e-08 0.0014 3 39 .. 272 308 .. 270 320 .. 0.87 2 ? 1.0 0.0 0.024 3.9e+02 41 99 .. 419 471 .. 419 474 .. 0.69 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 8.4e-08 Epiglycanin_C 3 pvsevkPsGslkPWeiiLitLvavvvavGllvgLsfC 39 p +e + G l+ We+iL+tL+ v +av l+ gL++ T300730_3 272 PGNEGRSNGCLRLWEVILVTLALVAMAVILFTGLFYF 308 56777889**************************984 PP == domain 2 score: 1.0 bits; conditional E-value: 0.024 Epiglycanin_C 41 rnllslrnladtavyrPhghnlslGlgyGvghglshrprwspdsvwrrpgssvalemgg 99 rn+l lrnl+ + h +n lG + + hg++ + +++ +r + s +++e + T300730_3 419 RNSLCLRNLFTKDL---HIPN--LGPCPQGYHGVQD-GSSETETDFRDQCSPTGMELMR 471 66777777766665...5557..8888888999988.4455667778888888888665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3244.18 // Query: T202694_1 [L=2824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-37 127.1 0.2 8.3e-37 126.4 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.4 0.2 5.1e-41 8.3e-37 1 168 [. 1955 2119 .. 1955 2120 .. 0.87 Alignments for each domain: == domain 1 score: 126.4 bits; conditional E-value: 5.1e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202694_1 1955 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 2048 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202694_1 2049 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 2119 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 14689.06 // Query: T202694_2 [L=2823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 14421.65 // Query: T202694_3 [L=2823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-10 39.3 0.3 9.4e-10 38.5 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.5 0.3 5.7e-14 9.4e-10 33 96 .. 2353 2417 .. 2348 2423 .. 0.95 Alignments for each domain: == domain 1 score: 38.5 bits; conditional E-value: 5.7e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202694_3 2353 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 2417 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 14683.86 // Query: T026119_1 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2368.77 // Query: T026119_2 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2368.77 // Query: T026119_3 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2417.11 // Query: T227797_1 [L=6390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.40s 00:00:01.86 Elapsed: 00:00:00.65 # Mc/sec: 28124.16 // Query: T227797_2 [L=6390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:00.62 # Mc/sec: 29485.01 // Query: T227797_3 [L=6389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.65 # Mc/sec: 28119.76 // Query: T172337_1 [L=1599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 8969.54 // Query: T172337_2 [L=1598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-05 24.4 0.0 4.8e-05 23.5 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 2.9e-09 4.8e-05 5 55 .. 377 428 .. 374 439 .. 0.85 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 2.9e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaL 55 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172337_2 377 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRAS 428 68*******99999******766766.557778999**************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 8465.94 // Query: T172337_3 [L=1598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 9524.18 // Query: T122850_1 [L=2626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.47 # Mc/sec: 15984.13 // Query: T122850_2 [L=2626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.48 # Mc/sec: 15651.12 // Query: T122850_3 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.48 # Mc/sec: 15645.16 // Query: T203185_1 [L=379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1088 (0.0667239); expected 326.1 (0.02) Passed bias filter: 267 (0.0163743); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2258.86 // Query: T203185_2 [L=379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 2045.76 // Query: T203185_3 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1931.06 // Query: T337535_1 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 6770.63 // Query: T337535_2 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 599 (0.0367349); expected 326.1 (0.02) Passed bias filter: 318 (0.019502); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.57 # Mc/sec: 6653.90 // Query: T337535_3 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.56 # Mc/sec: 6886.43 // Query: T244242_1 [L=248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1447.93 // Query: T244242_2 [L=248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.72 # Mc/sec: 985.40 // Query: T244242_3 [L=247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.70 # Mc/sec: 1009.46 // Query: T123723_1 [L=2528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.83 # Mc/sec: 8713.47 // Query: T123723_2 [L=2528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 10957.85 // Query: T123723_3 [L=2528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.65 # Mc/sec: 11126.43 // Query: T367344_1 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.74 # Mc/sec: 2976.81 // Query: T367344_2 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 3287.82 // Query: T367344_3 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 3671.40 // Query: T233825_1 [L=3707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1495 (0.091684); expected 326.1 (0.02) Passed bias filter: 440 (0.0269839); expected 326.1 (0.02) Passed Vit filter: 272 (0.016681); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.36u 0.48s 00:00:04.84 Elapsed: 00:00:01.04 # Mc/sec: 10197.21 // Query: T233825_2 [L=3707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1490 (0.0913774); expected 326.1 (0.02) Passed bias filter: 452 (0.0277199); expected 326.1 (0.02) Passed Vit filter: 247 (0.0151478); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.84u 0.43s 00:00:04.26 Elapsed: 00:00:01.05 # Mc/sec: 10100.09 // Query: T233825_3 [L=3706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1267 (0.0777015); expected 326.1 (0.02) Passed bias filter: 338 (0.0207286); expected 326.1 (0.02) Passed Vit filter: 185 (0.0113455); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.20u 0.49s 00:00:03.69 Elapsed: 00:00:01.01 # Mc/sec: 10497.26 // Query: T323202_1 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-73 241.9 500.5 3.5e-08 33.4 4.4 47.8 39 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 2.9 2e-07 0.0032 29 48 .. 56 75 .. 47 75 .. 0.95 2 ! 11.6 3.8 1.3e-05 0.22 2 43 .. 83 124 .. 83 129 .. 0.90 3 ! 25.3 6.7 7.1e-10 1.2e-05 1 36 [. 135 169 .. 135 172 .. 0.94 4 ! 13.3 9.2 4.2e-06 0.069 3 50 .] 169 237 .. 167 237 .. 0.91 5 ! 4.5 7.0 0.0022 36 2 47 .. 211 246 .. 210 253 .. 0.69 6 ! 12.1 2.7 9.4e-06 0.15 3 26 .. 256 278 .. 255 285 .. 0.91 7 ! 14.8 4.9 1.4e-06 0.022 10 39 .. 305 333 .. 305 335 .. 0.96 8 ! 19.9 0.2 3.4e-08 0.00056 22 47 .. 349 374 .. 341 376 .. 0.91 9 ! 15.1 12.5 1.1e-06 0.018 8 38 .. 388 417 .. 381 433 .. 0.88 10 ! 9.1 5.8 8.5e-05 1.4 2 45 .. 488 530 .. 446 532 .. 0.90 11 ? 1.2 1.3 0.024 3.9e+02 19 39 .. 525 545 .. 523 555 .. 0.89 12 ! 6.7 3.7 0.00047 7.6 19 49 .. 556 588 .. 551 588 .. 0.87 13 ! 7.7 8.4 0.00023 3.8 5 49 .. 620 660 .. 613 660 .. 0.93 14 ! 4.5 0.9 0.0022 36 1 19 [. 666 683 .. 666 686 .. 0.91 15 ! 17.3 9.3 2.2e-07 0.0037 1 40 [. 687 737 .. 687 740 .. 0.94 16 ! 3.5 2.6 0.0047 76 30 49 .. 758 777 .. 753 778 .. 0.79 17 ? -1.8 0.1 0.22 3.6e+03 23 33 .. 789 799 .. 779 801 .. 0.65 18 ! 18.4 0.3 1e-07 0.0017 23 48 .. 834 859 .. 828 859 .. 0.89 19 ! 24.1 0.9 1.7e-09 2.8e-05 29 50 .] 861 882 .. 861 882 .. 0.99 20 ! 12.3 0.4 8.5e-06 0.14 31 47 .. 884 900 .. 884 903 .. 0.94 21 ! 4.0 0.7 0.0034 55 17 39 .. 902 924 .. 900 928 .. 0.87 22 ! 8.6 2.1 0.00012 1.9 4 30 .. 934 959 .. 932 962 .. 0.89 23 ! 6.7 0.5 0.00048 7.8 3 18 .. 965 979 .. 964 983 .. 0.87 24 ! 22.4 14.5 5.6e-09 9.2e-05 1 50 [] 984 1032 .. 984 1032 .. 0.91 25 ! 8.3 2.4 0.00015 2.4 21 38 .. 1024 1041 .. 1016 1049 .. 0.82 26 ! 21.4 19.2 1.2e-08 0.00019 7 50 .] 1064 1116 .. 1038 1116 .. 0.91 27 ! 16.2 9.2 5.1e-07 0.0083 16 49 .. 1103 1136 .. 1101 1138 .. 0.91 28 ! 2.9 12.1 0.0074 1.2e+02 17 50 .] 1125 1170 .. 1123 1170 .. 0.81 29 ? 2.0 5.1 0.014 2.3e+02 14 38 .. 1155 1179 .. 1153 1193 .. 0.80 30 ? 0.8 33.2 0.033 5.3e+02 2 42 .. 1199 1325 .. 1198 1344 .. 0.91 31 ! 33.4 4.4 2.1e-12 3.5e-08 19 50 .] 1358 1389 .. 1347 1389 .. 0.95 32 ! 18.0 17.1 1.3e-07 0.0022 1 50 [] 1394 1455 .. 1394 1455 .. 0.96 33 ? -3.1 1.2 0.55 9e+03 11 11 .. 1531 1531 .. 1519 1565 .. 0.46 34 ? -0.4 9.9 0.075 1.2e+03 19 39 .. 1665 1686 .. 1653 1698 .. 0.69 35 ! 7.7 3.9 0.00022 3.6 1 25 [. 1713 1736 .. 1713 1739 .. 0.94 36 ! 12.7 0.4 6.1e-06 0.1 2 15 .. 1747 1759 .. 1747 1766 .. 0.82 37 ! 12.6 19.4 6.9e-06 0.11 1 37 [. 1767 1846 .. 1767 1848 .. 0.99 38 ! 2.7 14.5 0.0086 1.4e+02 1 46 [. 1843 1888 .. 1843 1889 .. 0.57 39 ! 13.8 4.5 2.8e-06 0.046 16 39 .. 1902 1925 .. 1900 1940 .. 0.87 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 2e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323202_1 56 LPAASPGPELSPVSLHRPSS 75 9*****************98 PP == domain 2 score: 11.6 bits; conditional E-value: 1.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323202_1 83 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 124 788********.***********************99765555 PP == domain 3 score: 25.3 bits; conditional E-value: 7.1e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323202_1 135 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 169 9***********.*******************9755 PP == domain 4 score: 13.3 bits; conditional E-value: 4.2e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323202_1 169 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 237 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.5 bits; conditional E-value: 0.0022 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323202_1 211 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 246 899********.7777777777777777655433.........333 PP == domain 6 score: 12.1 bits; conditional E-value: 9.4e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323202_1 256 PALASRWPLQ-AQLLSQDVISRPK 278 9*********.******9999995 PP == domain 7 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323202_1 305 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 333 9**.************************98 PP == domain 8 score: 19.9 bits; conditional E-value: 3.4e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323202_1 349 FGPVPVQLTATNVGPKLPQVKLSRPA 374 78889********************5 PP == domain 9 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323202_1 388 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 417 69***.**********************975 PP == domain 10 score: 9.1 bits; conditional E-value: 8.5e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323202_1 488 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 530 55557888999.***********************998887776 PP == domain 11 score: 1.2 bits; conditional E-value: 0.024 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323202_1 525 PRRLFQAQLLPFAACPGPECP 545 788999**************7 PP == domain 12 score: 6.7 bits; conditional E-value: 0.00047 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323202_1 556 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 588 78999***************65557999*9997 PP == domain 13 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323202_1 620 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 660 89999999.9***************97...5778999******** PP == domain 14 score: 4.5 bits; conditional E-value: 0.0022 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323202_1 666 PGTALASWQALQ-AQILQK 683 9***********.999885 PP == domain 15 score: 17.3 bits; conditional E-value: 2.2e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323202_1 687 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 737 889*******************************************98555 PP == domain 16 score: 3.5 bits; conditional E-value: 0.0047 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323202_1 758 LTHTPVPKLPPVSQSRPSSS 777 5556779***********97 PP == domain 17 score: -1.8 bits; conditional E-value: 0.22 DUF4705 23 srpsaqLpvAs 33 +psa++ +As T323202_1 789 KSPSAGPAPAS 799 55666666665 PP == domain 18 score: 18.4 bits; conditional E-value: 1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323202_1 834 LQTKLSLPVASTGQNCPQVSLSRANS 859 678899*****************976 PP == domain 19 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323202_1 861 LPVASAGQNRPQVSLFTPSSCL 882 8********************9 PP == domain 20 score: 12.3 bits; conditional E-value: 8.5e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323202_1 884 VASAGAKLPQVGLSRPS 900 8***************7 PP == domain 21 score: 4.0 bits; conditional E-value: 0.0034 DUF4705 17 lqasglsrpsaqLpvAsaGpklp 39 l + g+ rps++L++ s+ p lp T323202_1 902 LLPEGMYRPSLCLTADSPCPALP 924 67899**********99999987 PP == domain 22 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323202_1 934 APAFRQLVR-AQLLPHGGLFSPNSCLL 959 9*****555.***************95 PP == domain 23 score: 6.7 bits; conditional E-value: 0.00048 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323202_1 965 SAPASHWPLE-AQLMP 979 6********9.99887 PP == domain 24 score: 22.4 bits; conditional E-value: 5.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323202_1 984 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1032 8***********.***************99876666667899*******9 PP == domain 25 score: 8.3 bits; conditional E-value: 0.00015 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323202_1 1024 SLCGPSSCLPVASVGQAR 1041 5667***********986 PP == domain 26 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 7 srrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s rpLqa + ++glsr+s++Lpv saGp++p++gL rPss L T323202_1 1064 SSRPLQAqlflpaasaGPDCCQVGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1116 6799999****9998866667899***************************87 PP == domain 27 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323202_1 1103 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1136 66899**************************975 PP == domain 28 score: 2.9 bits; conditional E-value: 0.0074 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323202_1 1125 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1170 57899***9637*********9989888888888888888888765 PP == domain 29 score: 2.0 bits; conditional E-value: 0.014 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323202_1 1155 PGLLPPEGLHRPSLSLTADSPRPAS 1179 678999********99998877765 PP == domain 30 score: 0.8 bits; conditional E-value: 0.033 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323202_1 1199 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1296 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323202_1 1297 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1325 7888*********************5543 PP == domain 31 score: 33.4 bits; conditional E-value: 2.1e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323202_1 1358 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1389 589****************************9 PP == domain 32 score: 18.0 bits; conditional E-value: 1.3e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323202_1 1394 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1455 8***********.************************99*99999999999***********8 PP == domain 33 score: -3.1 bits; conditional E-value: 0.55 DUF4705 11 L 11 L T323202_1 1531 L 1531 2 PP == domain 34 score: -0.4 bits; conditional E-value: 0.075 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323202_1 1665 SRRPLRAQLFLPAASLGPTPaS 1686 6777788888888888887752 PP == domain 35 score: 7.7 bits; conditional E-value: 0.00022 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323202_1 1713 PGPGQASRWPRQ-AQLLPSDGISRS 1736 9***********.********9985 PP == domain 36 score: 12.7 bits; conditional E-value: 6.1e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323202_1 1747 GPAWASRRPLQA-Q 1759 9**********4.4 PP == domain 37 score: 12.6 bits; conditional E-value: 6.9e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323202_1 1767 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1846 9***************************************************************.***************7 PP == domain 38 score: 2.7 bits; conditional E-value: 0.0086 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323202_1 1843 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 1888 9***********44444444444444444444444444444.....................44444 PP == domain 39 score: 13.8 bits; conditional E-value: 2.8e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpklp 39 +l+ +++rps++LpvAs Gp + T323202_1 1902 LLPFGRFGRPSSCLPVASLGPAHS 1925 578889***************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.59 # Mc/sec: 9755.92 // Query: T323202_2 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-59 197.1 513.5 1.2e-15 57.2 9.2 45.5 38 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 1.0 0.00022 3.5 4 24 .. 53 73 .. 52 89 .. 0.90 2 ? -0.6 15.5 0.09 1.5e+03 7 36 .. 130 158 .. 103 159 .. 0.73 3 ! 23.0 3.9 3.7e-09 6e-05 1 31 [. 156 185 .. 156 198 .. 0.88 4 ! 16.2 2.8 4.9e-07 0.008 1 35 [. 199 232 .. 199 241 .. 0.90 5 ! 44.1 11.0 1e-15 1.6e-11 1 50 [] 243 291 .. 243 291 .. 0.99 6 ! 23.1 0.8 3.4e-09 5.6e-05 28 50 .] 290 312 .. 289 312 .. 0.97 7 ? -1.1 12.1 0.13 2.2e+03 20 41 .. 388 414 .. 317 417 .. 0.88 8 ? 0.8 3.4 0.033 5.4e+02 5 26 .. 418 438 .. 418 439 .. 0.94 9 ! 16.9 1.7 3e-07 0.0048 2 36 .. 477 510 .. 477 510 .. 0.98 10 ? -4.6 18.6 1 1.6e+04 1 39 [. 508 570 .. 508 599 .. 0.61 11 ? 2.2 7.6 0.012 1.9e+02 1 50 [] 560 620 .. 560 620 .. 0.78 12 ! 3.8 0.2 0.0037 60 16 37 .. 619 640 .. 618 650 .. 0.82 13 ! 2.6 14.2 0.0086 1.4e+02 2 33 .. 656 718 .. 656 718 .. 0.85 14 ! 24.6 3.3 1.2e-09 2e-05 2 35 .. 720 752 .. 720 756 .. 0.93 15 ! 4.8 0.8 0.0018 30 28 49 .. 766 787 .. 759 787 .. 0.88 16 ! 13.0 6.4 4.9e-06 0.08 10 48 .. 791 838 .. 789 839 .. 0.97 17 ! 3.0 7.6 0.0065 1.1e+02 3 29 .. 878 904 .. 839 907 .. 0.92 18 ! 14.6 1.4 1.6e-06 0.026 1 30 [. 908 936 .. 908 939 .. 0.96 19 ? 0.7 4.7 0.035 5.6e+02 18 50 .] 943 979 .. 940 979 .. 0.80 20 ! 9.7 3.3 5.3e-05 0.87 8 43 .. 980 1014 .. 979 1019 .. 0.89 21 ! 20.4 15.6 2.4e-08 0.00039 2 49 .. 1027 1073 .. 1026 1073 .. 0.94 22 ? -1.9 0.0 0.23 3.8e+03 7 15 .. 1074 1081 .. 1074 1086 .. 0.81 23 ! 10.1 0.6 3.9e-05 0.64 1 15 [. 1089 1102 .. 1089 1109 .. 0.82 24 ! 21.0 14.2 1.6e-08 0.00027 1 39 [. 1110 1160 .. 1110 1163 .. 0.93 25 ! 24.3 25.1 1.5e-09 2.4e-05 1 50 [] 1164 1247 .. 1164 1247 .. 0.95 26 ! 8.7 7.5 0.00011 1.8 29 50 .] 1247 1268 .. 1245 1268 .. 0.96 27 ! 21.2 2.9 1.4e-08 0.00023 17 50 .] 1268 1301 .. 1268 1301 .. 0.96 28 ! 57.2 9.2 7.6e-20 1.2e-15 1 50 [] 1306 1353 .. 1306 1353 .. 0.99 29 ? -2.6 7.9 0.37 6e+03 5 50 .] 1354 1410 .. 1354 1410 .. 0.71 30 ? 0.1 15.5 0.055 9e+02 5 50 .] 1387 1444 .. 1383 1444 .. 0.78 31 ? -3.9 2.0 0.93 1.5e+04 7 24 .. 1482 1518 .. 1480 1547 .. 0.54 32 ? -2.4 0.6 0.33 5.4e+03 4 11 .. 1556 1563 .. 1556 1579 .. 0.79 33 ! 2.9 0.9 0.0074 1.2e+02 8 27 .. 1655 1673 .. 1652 1675 .. 0.87 34 ! 11.4 10.6 1.6e-05 0.26 14 48 .. 1714 1760 .. 1709 1761 .. 0.74 35 ? -5.9 12.4 1 1.6e+04 9 45 .. 1764 1809 .. 1763 1814 .. 0.62 36 ? -4.9 14.2 1 1.6e+04 7 46 .. 1814 1866 .. 1812 1869 .. 0.80 37 ? -0.7 2.9 0.095 1.5e+03 16 34 .. 1880 1898 .. 1866 1904 .. 0.62 38 ! 22.7 3.2 4.6e-09 7.5e-05 2 36 .. 1910 1943 .. 1909 1950 .. 0.91 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00022 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323202_2 53 APTSRQPLQAQNFLQSASTDQ 73 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.09 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323202_2 130 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 158 345555.**********************9 PP == domain 3 score: 23.0 bits; conditional E-value: 3.7e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323202_2 156 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 185 9***********.*****************9 PP == domain 4 score: 16.2 bits; conditional E-value: 4.9e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323202_2 199 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 232 57*******9996..7*******************9 PP == domain 5 score: 44.1 bits; conditional E-value: 1e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323202_2 243 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 291 8***********.************************************9 PP == domain 6 score: 23.1 bits; conditional E-value: 3.4e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323202_2 290 CLLVAYEGPKSPQVDLSRPSSCL 312 9*********************9 PP == domain 7 score: -1.1 bits; conditional E-value: 0.13 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323202_2 388 NSLCRPCSCLPGASPGPALaswrlPQA 414 5799*************9965555555 PP == domain 8 score: 0.8 bits; conditional E-value: 0.033 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323202_2 418 PACQQPQQ-AQLFPHSGPFRPN 438 9*******.*********9996 PP == domain 9 score: 16.9 bits; conditional E-value: 3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323202_2 477 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 510 59*********.**********************9 PP == domain 10 score: -4.6 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323202_2 508 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 570 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 11 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323202_2 560 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 620 789999999646557888895555444455679***********99999999999999887 PP == domain 12 score: 3.8 bits; conditional E-value: 0.0037 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323202_2 619 SLPHSILRKLSICLTVASPGHE 640 67888888889*********87 PP == domain 13 score: 2.6 bits; conditional E-value: 0.0086 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323202_2 656 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 718 9**********9999999999999999999998888888888888888888888888888776 PP == domain 14 score: 24.6 bits; conditional E-value: 1.2e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323202_2 720 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 752 89*********.*******************985 PP == domain 15 score: 4.8 bits; conditional E-value: 0.0018 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323202_2 766 FLQSASPGQALPPKGFCRPKSS 787 6888***************997 PP == domain 16 score: 13.0 bits; conditional E-value: 4.9e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323202_2 791 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 838 9*********************************************98 PP == domain 17 score: 3.0 bits; conditional E-value: 0.0065 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323202_2 878 PALVCKWPLQEQNCLKSASPGPASCFP 904 999999***999999999999988776 PP == domain 18 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323202_2 908 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 936 8***********.****************9 PP == domain 19 score: 0.7 bits; conditional E-value: 0.035 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323202_2 943 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 979 56777788888888886656779999**********8 PP == domain 20 score: 9.7 bits; conditional E-value: 5.3e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323202_2 980 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1014 57777.999**********************98877 PP == domain 21 score: 20.4 bits; conditional E-value: 2.4e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323202_2 1027 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1073 9********995..4689999**************************97 PP == domain 22 score: -1.9 bits; conditional E-value: 0.23 DUF4705 7 srrpLqapa 15 srrpLq ++ T323202_2 1074 SRRPLQ-AQ 1081 79****.66 PP == domain 23 score: 10.1 bits; conditional E-value: 3.9e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323202_2 1089 PGPAPASRCPLQA-Q 1102 9***********4.4 PP == domain 24 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323202_2 1110 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1160 9*******************************9.89**********876666 PP == domain 25 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323202_2 1164 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1247 8*********************************************6515699*****************************98 PP == domain 26 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323202_2 1247 LPASSPGPALPPGCVSRPDCCL 1268 9********************9 PP == domain 27 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323202_2 1268 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1301 6889****************************87 PP == domain 28 score: 57.2 bits; conditional E-value: 7.6e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323202_2 1306 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1353 9*********************************************..97 PP == domain 29 score: -2.6 bits; conditional E-value: 0.37 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323202_2 1354 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1410 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 30 score: 0.1 bits; conditional E-value: 0.055 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323202_2 1387 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1444 599*****888888888876665555556677889999999888886799999*9998 PP == domain 31 score: -3.9 bits; conditional E-value: 0.93 DUF4705 7 srrpLqa...................paslqasglsr 24 s+rpL p++l +g s T323202_2 1482 SHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1518 5555544555555555555555555566666666553 PP == domain 32 score: -2.4 bits; conditional E-value: 0.33 DUF4705 4 APasrrpL 11 A as++pL T323202_2 1556 ALASHWPL 1563 89*****9 PP == domain 33 score: 2.9 bits; conditional E-value: 0.0074 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323202_2 1655 ARPLQ-THLQPPGVLSGPSS 1673 69***.99999999999987 PP == domain 34 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323202_2 1714 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1760 555699*******************6666666666666666666666 PP == domain 35 score: -5.9 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323202_2 1764 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1809 7888.666666654222222277778886577888865558888888 PP == domain 36 score: -4.9 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323202_2 1814 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1866 67999998888644344444678999999999999999999999999999999 PP == domain 37 score: -0.7 bits; conditional E-value: 0.095 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323202_2 1880 SLTADSPRPASSRLTAASP 1898 4566666666667766664 PP == domain 38 score: 22.7 bits; conditional E-value: 4.6e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323202_2 1910 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1943 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.70 # Mc/sec: 8222.84 // Query: T323202_3 [L=2011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-82 269.9 487.7 3.4e-17 62.3 8.0 44.0 43 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.2 0.16 2.6e+03 38 47 .. 54 63 .. 53 67 .. 0.81 2 ? -0.3 0.1 0.073 1.2e+03 7 34 .. 66 92 .. 61 94 .. 0.86 3 ! 34.5 7.0 9.8e-13 1.6e-08 3 49 .. 94 139 .. 92 140 .. 0.96 4 ! 31.0 7.0 1.2e-11 1.9e-07 1 38 [. 145 181 .. 145 191 .. 0.93 5 ! 24.0 4.7 1.8e-09 2.9e-05 5 38 .. 192 224 .. 186 233 .. 0.92 6 ! 23.2 6.2 3.4e-09 5.5e-05 5 38 .. 236 268 .. 235 271 .. 0.95 7 ! 10.8 3.1 2.4e-05 0.39 1 34 [. 264 292 .. 264 303 .. 0.77 8 ! 22.7 16.3 4.8e-09 7.8e-05 1 49 [. 306 353 .. 306 354 .. 0.99 9 ! 9.0 1.8 8.7e-05 1.4 8 40 .. 367 398 .. 365 401 .. 0.84 10 ! 11.2 12.5 1.9e-05 0.31 2 34 .. 392 423 .. 391 451 .. 0.59 11 ! 13.1 0.5 4.8e-06 0.078 16 35 .. 479 498 .. 472 499 .. 0.92 12 ! 31.4 8.9 9e-12 1.5e-07 2 50 .] 498 545 .. 497 545 .. 0.97 13 ? -1.6 0.1 0.18 2.9e+03 9 25 .. 547 572 .. 546 575 .. 0.56 14 ? 0.1 2.6 0.053 8.7e+02 1 33 [. 593 625 .. 593 627 .. 0.91 15 ! 15.1 6.5 1.1e-06 0.018 4 44 .. 629 686 .. 629 692 .. 0.97 16 ! 9.9 0.1 4.6e-05 0.75 14 37 .. 720 743 .. 711 748 .. 0.88 17 ! 24.1 2.8 1.7e-09 2.7e-05 18 50 .] 766 798 .. 744 798 .. 0.83 18 ! 4.8 0.8 0.0018 29 28 47 .. 828 847 .. 820 850 .. 0.85 19 ? 1.7 1.2 0.017 2.7e+02 7 27 .. 850 869 .. 848 874 .. 0.91 20 ? -0.4 0.1 0.074 1.2e+03 7 24 .. 871 887 .. 869 890 .. 0.87 21 ! 9.5 9.3 6.1e-05 0.99 6 38 .. 891 933 .. 887 939 .. 0.89 22 ! 10.4 6.3 3.2e-05 0.52 1 33 [. 941 972 .. 941 972 .. 0.95 23 ! 4.0 2.6 0.0033 54 19 43 .. 979 1004 .. 976 1010 .. 0.80 24 ! 15.8 12.5 6.5e-07 0.011 1 38 [. 994 1051 .. 994 1057 .. 0.87 25 ? 2.4 13.8 0.01 1.7e+02 1 49 [. 1047 1104 .. 1047 1105 .. 0.95 26 ? -1.0 7.4 0.12 2e+03 7 40 .. 1126 1157 .. 1124 1157 .. 0.79 27 ? 2.3 9.3 0.011 1.8e+02 3 26 .. 1155 1177 .. 1146 1177 .. 0.93 28 ! 15.5 1.8 8.3e-07 0.014 14 36 .. 1188 1210 .. 1179 1216 .. 0.90 29 ? 2.1 0.0 0.013 2.1e+02 27 39 .. 1213 1225 .. 1212 1227 .. 0.90 30 ! 6.1 11.4 0.0007 11 1 38 [. 1220 1266 .. 1220 1273 .. 0.85 31 ! 16.1 2.3 5.4e-07 0.0088 1 26 [. 1295 1319 .. 1295 1321 .. 0.95 32 ? -1.4 4.4 0.16 2.6e+03 1 29 [. 1328 1366 .. 1328 1371 .. 0.77 33 ? -2.3 11.6 0.31 5e+03 8 46 .. 1379 1421 .. 1374 1433 .. 0.85 34 ? -4.6 5.3 1 1.6e+04 10 39 .. 1413 1439 .. 1412 1448 .. 0.52 35 ? -3.9 3.2 0.94 1.5e+04 7 14 .. 1498 1523 .. 1492 1556 .. 0.56 36 ! 13.2 9.9 4.4e-06 0.072 17 50 .] 1652 1685 .. 1630 1685 .. 0.85 37 ! 27.6 3.3 1.4e-10 2.3e-06 17 50 .] 1685 1718 .. 1684 1718 .. 0.96 38 ! 62.3 8.0 2.1e-21 3.4e-17 1 50 [] 1723 1772 .. 1723 1772 .. 0.99 39 ! 12.2 0.9 9e-06 0.15 25 44 .. 1768 1787 .. 1767 1788 .. 0.91 40 ! 10.5 5.2 3e-05 0.5 24 49 .. 1799 1823 .. 1793 1824 .. 0.80 41 ! 3.9 2.0 0.0034 55 26 39 .. 1822 1837 .. 1821 1846 .. 0.73 42 ? 2.4 0.7 0.01 1.6e+02 29 50 .] 1848 1870 .. 1848 1870 .. 0.86 43 ! 21.4 13.6 1.2e-08 0.0002 1 39 [. 1875 1935 .. 1875 1942 .. 0.95 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.16 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323202_3 54 LPPGSLSRPR 63 6889999985 PP == domain 2 score: -0.3 bits; conditional E-value: 0.073 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323202_3 66 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 92 567788.999**********99999877 PP == domain 3 score: 34.5 bits; conditional E-value: 9.8e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323202_3 94 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 139 689*******.************************************ PP == domain 4 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323202_3 145 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 181 9***********.***********************86 PP == domain 5 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323202_3 192 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 224 899*****.***********************98 PP == domain 6 score: 23.2 bits; conditional E-value: 3.4e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323202_3 236 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 268 9*******.***********************87 PP == domain 7 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323202_3 264 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 292 9***********5444.....4446888888887 PP == domain 8 score: 22.7 bits; conditional E-value: 4.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323202_3 306 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 353 9***********.************************************ PP == domain 9 score: 9.0 bits; conditional E-value: 8.7e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323202_3 367 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 398 57799..889999****************99544 PP == domain 10 score: 11.2 bits; conditional E-value: 1.9e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323202_3 392 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 423 9**********.666666666666666666553 PP == domain 11 score: 13.1 bits; conditional E-value: 4.8e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323202_3 479 PLPHSGPSRPRWCLTVASSG 498 69****************98 PP == domain 12 score: 31.4 bits; conditional E-value: 9e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323202_3 498 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 545 89*********.*********************************9887 PP == domain 13 score: -1.6 bits; conditional E-value: 0.18 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323202_3 547 RRLQDelilpvrlqARLLPHNNLLWS 572 56666666633333666666666555 PP == domain 14 score: 0.1 bits; conditional E-value: 0.053 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323202_3 593 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 625 89999*******888999999999999999988 PP == domain 15 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323202_3 629 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 686 88******************************************************97 PP == domain 16 score: 9.9 bits; conditional E-value: 4.6e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323202_3 720 AKLLPFGSLYRPSSCLAIAFVGQD 743 67899999**************95 PP == domain 17 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323202_3 766 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 798 455566899***********************9 PP == domain 18 score: 4.8 bits; conditional E-value: 0.0018 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323202_3 828 LLQLASPDQALPPSGLYRPK 847 6889***************6 PP == domain 19 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323202_3 850 SSQPLQ-GQLLATGGFCRPKS 869 689***.***********986 PP == domain 20 score: -0.4 bits; conditional E-value: 0.074 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323202_3 871 SSQPLH-TQLLSVSGLCR 887 78****.*****999866 PP == domain 21 score: 9.5 bits; conditional E-value: 6.1e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323202_3 891 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 933 788999999999999999********************99888 PP == domain 22 score: 10.4 bits; conditional E-value: 3.2e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323202_3 941 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 972 8***********.*****9999999******98 PP == domain 23 score: 4.0 bits; conditional E-value: 0.0033 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323202_3 979 SRGLNGPSPCLSAASTGPAStSQWAL 1004 78999999999999999976566555 PP == domain 24 score: 15.8 bits; conditional E-value: 6.5e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323202_3 994 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1051 688888888888888888888888888888888**********************876 PP == domain 25 score: 2.4 bits; conditional E-value: 0.01 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323202_3 1047 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1104 89999999*************9899******************************997 PP == domain 26 score: -1.0 bits; conditional E-value: 0.12 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323202_3 1126 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 1157 679***777899******98..667777777765 PP == domain 27 score: 2.3 bits; conditional E-value: 0.011 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323202_3 1155 RPPASRRPAQ-AQPQPHSGLSTPS 1177 66********.************7 PP == domain 28 score: 15.5 bits; conditional E-value: 8.3e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323202_3 1188 PKLLPLGRFGRPSSRLPVASSGP 1210 899*******************9 PP == domain 29 score: 2.1 bits; conditional E-value: 0.013 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323202_3 1213 SFLTTAFPGPVFP 1225 79*********97 PP == domain 30 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323202_3 1220 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1266 7888889**************766651678***************86 PP == domain 31 score: 16.1 bits; conditional E-value: 5.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323202_3 1295 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1319 9***********.9***********7 PP == domain 32 score: -1.4 bits; conditional E-value: 0.16 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323202_3 1328 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1366 8899998.77799988888888888888877776666666 PP == domain 33 score: -2.3 bits; conditional E-value: 0.31 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 + L+ + +l+ gl rps++ AsaGp l +a Ls P T323202_3 1379 SQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1421 67799.9**********************997777545666655 PP == domain 34 score: -4.6 bits; conditional E-value: 1 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323202_3 1413 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1439 899.5555555..33444444555555542 PP == domain 35 score: -3.9 bits; conditional E-value: 0.94 DUF4705 7 srrpLqa..................p 14 s++pL + T323202_3 1498 SHWPLAShwplpr*qrsv*apcltlA 1523 55555334444445555555555552 PP == domain 36 score: 13.2 bits; conditional E-value: 4.4e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323202_3 1652 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1685 45568**************************987 PP == domain 37 score: 27.6 bits; conditional E-value: 1.4e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323202_3 1685 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1718 8999****************************87 PP == domain 38 score: 62.3 bits; conditional E-value: 2.1e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323202_3 1723 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1772 9***********************************************98 PP == domain 39 score: 12.2 bits; conditional E-value: 9e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323202_3 1768 SSSSLPAASAGLSCPQVGLE 1787 6899**************96 PP == domain 40 score: 10.5 bits; conditional E-value: 3e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323202_3 1799 GPSSV-LLASPGAKLPRVSLSRPSSS 1823 45555.579***************97 PP == domain 41 score: 3.9 bits; conditional E-value: 0.0034 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323202_3 1822 SSCLPVASFGPAQlmA 1837 89*********86443 PP == domain 42 score: 2.4 bits; conditional E-value: 0.01 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323202_3 1848 LLVASSGPELdLQSAFAGPASCL 1870 789*******8677888999998 PP == domain 43 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323202_3 1875 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1935 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.75 # Mc/sec: 7670.84 // Query: T236011_1 [L=3759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-05 22.5 5.1 0.0007 18.6 0.0 2.7 3 PHO4 Phosphate transporter family ------ inclusion threshold ------ 3.7 7.0 0.0 3.7 7.0 0.0 3.4 3 SUR7 SUR7/PalI family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.9 0.2 0.00064 5.3 130 170 .. 498 531 .. 486 707 .. 0.71 2 ! 18.6 0.0 8.6e-08 0.0007 99 172 .. 893 979 .. 886 2103 .. 0.82 3 ? -5.0 1.2 1.3 1.1e+04 72 95 .. 3495 3518 .. 3483 3522 .. 0.79 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00064 PHO4 130 gllaallfllvrrlillkaalkllpllvlltvainaflily 170 +++ +++++ ++ ++ ++ +l++++v+++++++++ T236011_1 498 MMMMVIVMV-------VMTMMVMVMMLMVVMVMMLMMMVTM 531 111111111.......1222222222222222222222211 PP == domain 2 score: 18.6 bits; conditional E-value: 8.6e-08 PHO4 99 iGaalaaag.savkwgglvkivlswvlsPllggllaallfllvrrlil..lkaalkllpllvlltvainaflilyk..........l 172 i++ ++ + v ++ ++ +++ +++++++ +++ ++++++v+ +++ ++a++ ++ ++++++++++++ i++k T236011_1 893 IAVVIVVMMvVLVMVMMMAMVIMVMMMAVMVVMVMMVIMMMIVMVMVVkmIMAMVMMMMMIMMVMTMVVIITIMLKtlhttltrhcA 979 334444322133334567778888888888888888888888888866543344444444444444555555555444444444440 PP == domain 3 score: -5.0 bits; conditional E-value: 1.3 PHO4 72 laaavwlllatylglPvStthslv 95 l +++ l l+ +++lP S+++sl T236011_1 3495 LLSFFSLCLSLFVSLPFSSSVSLF 3518 55777889999999****999985 PP >> SUR7 SUR7/PalI family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.0 0.00045 3.7 108 172 .. 370 521 .. 367 539 .. 0.53 2 ? -10.8 24.3 2 1.6e+04 111 168 .. 913 971 .. 886 993 .. 0.48 3 ? -6.3 5.2 2 1.6e+04 7 36 .. 3495 3525 .. 3475 3548 .. 0.48 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00045 SUR7 108 tkalfilhiialvlsfislvvqllaic......................................................................... 134 +++l+ l+++ +v++++ ++v ++ ++ T236011_1 370 WQWLWWLMVVMIVMMMMVMMVMVMMVVmg**r*ww**w*r*w*w*w**ww***w*wq*****w**ww*ygdgddgdgdgddddgdgdygdddddddgdgs 469 5677777777776666544443333333777777777777777777777777777777777777777777777777777777777777777777777766 PP SUR7 135 ...............vspdnsrllsflnlllsllsflftllaalldtllfviv 172 n ++ ++++++ ++++++++ + ++++ l+v++ T236011_1 470 dddddgsnddddgdgDYGVND-VVVMIMIMMMMVIVMVVMTMMVMVMMLMVVM 521 666665554444443111122.2333333333333333333333333322222 PP == domain 2 score: -10.8 bits; conditional E-value: 2 SUR7 111 lfilhiialvlsfislvvqllai.cvspdnsrllsflnlllsllsflftllaalldtll 168 + +++++a++ ++++v+ ++++ ++ + ++ ++++++ ++ +++++++ +l tl T236011_1 913 VIMVMMMAVMVVMVMMVIMMMIVmVMVVKMIMAMVMMMMMIMMVMTMVVIITIMLKTLH 971 11122222222222222222222122222233344444455555555555555555555 PP == domain 3 score: -6.3 bits; conditional E-value: 2 SUR7 7 ilslaalillifallgsi.knstpltniyls 36 +ls+++l l++f+ l+ + s +l+++ ++ T236011_1 3495 LLSFFSLCLSLFVSLPFSsSVSLFLSSTLCL 3525 2222222222232222221111122222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1555 (0.0953637); expected 326.1 (0.02) Passed bias filter: 330 (0.0202379); expected 326.1 (0.02) Passed Vit filter: 208 (0.012756); expected 16.3 (0.001) Passed Fwd filter: 49 (0.00300503); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.29u 0.41s 00:00:03.70 Elapsed: 00:00:01.17 # Mc/sec: 9191.33 // Query: T236011_2 [L=3759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1546 (0.0948117); expected 326.1 (0.02) Passed bias filter: 488 (0.0299276); expected 326.1 (0.02) Passed Vit filter: 380 (0.0233043); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.99u 0.47s 00:00:04.46 Elapsed: 00:00:01.07 # Mc/sec: 10050.34 // Query: T236011_3 [L=3758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1121 (0.0687477); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.42s 00:00:02.74 Elapsed: 00:00:00.86 # Mc/sec: 12501.16 // Query: T369155_1 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 3895.93 // Query: T369155_2 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 4115.19 // Query: T369155_3 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 3962.78 // Query: T348694_1 [L=3669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.32s 00:00:01.88 Elapsed: 00:00:00.94 # Mc/sec: 11166.37 // Query: T348694_2 [L=3669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.89 7.6 17.4 1.3 7.0 17.4 1.0 1 Nop14 Nop14-like family 5.8 6.1 19.5 8.6 5.6 19.5 1.1 1 SDA1 SDA1 Domain annotation for each model (and alignments): >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 17.4 0.00016 1.3 352 409 .. 2213 2271 .. 2189 2305 .. 0.45 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00016 Nop14 352 ddfeedddlveseseeeeeeeeedeeeeedeeeee.eeeededdlsdleseeeeeedel 409 ++ e ++ eeeeeeeed eeee+eeeee +eee++ ++++e+ee+e++ e T348694_2 2213 QEGEGGGGGRGGGEGEEEEEEEEDVEEEEEEEEEEeKEEEEKGGEKEEENEEKEKQREG 2271 22222221122222222222222222222222222122222222222222222222222 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 19.5 0.0011 8.6 132 175 .. 2228 2271 .. 2200 2331 .. 0.45 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0011 SDA1 132 sdesedeeeeeeeeeekeekeeeeeeee.eeeeeeeeeeeeeeke 175 ++e+e+ee+ eeeeee+ee+e+eeee+ e+eee+ee+e+++ ++ T348694_2 2228 EEEEEEEEDVEEEEEEEEEEEKEEEEKGgEKEEENEEKEKQR-EG 2271 111112221111111111111111111111111111111111.11 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 918 (0.0562983); expected 326.1 (0.02) Passed bias filter: 458 (0.0280878); expected 326.1 (0.02) Passed Vit filter: 168 (0.010303); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.87u 0.44s 00:00:03.31 Elapsed: 00:00:01.01 # Mc/sec: 10392.46 // Query: T348694_3 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 891 (0.0546425); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.35s 00:00:02.10 Elapsed: 00:00:00.78 # Mc/sec: 13453.24 // Query: T137628_1 [L=13120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 841 (0.0515761); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.04u 0.58s 00:00:05.62 Elapsed: 00:00:01.29 # Mc/sec: 29096.19 // Query: T137628_2 [L=13120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1599 (0.0980621); expected 326.1 (0.02) Passed bias filter: 338 (0.0207286); expected 326.1 (0.02) Passed Vit filter: 185 (0.0113455); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 9.98u 0.75s 00:00:10.73 Elapsed: 00:00:01.82 # Mc/sec: 20623.13 // Query: T137628_3 [L=13119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (13119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1552 (0.0951797); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 136 (0.00834049); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.61u 0.63s 00:00:08.24 Elapsed: 00:00:01.34 # Mc/sec: 28008.38 // Query: T004607_1 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.5 9.3 7.5 3.1 8.3 7.5 1.4 1 FoP_duplication C-terminal duplication domain of Friend of P Domain annotation for each model (and alignments): >> FoP_duplication C-terminal duplication domain of Friend of PRMT1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 7.5 0.00019 3.1 19 48 .. 189 217 .. 182 221 .. 0.53 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00019 FoP_duplication 19 grgrggrggrggrgrgrggrggkkkkkpkt 48 g+g+gg ggrgg+g+g gg+++ +kkk+kt T004607_1 189 GEGGGGGGGRGGGGGGGGGGEK-EKKKNKT 217 3344444444444444444444.6666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.55 # Mc/sec: 2834.82 // Query: T004607_2 [L=545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.45 10.6 3.2 0.17 12.0 0.8 1.5 2 E7 E7 protein, Early protein 0.46 10.0 7.7 0.72 9.4 7.7 1.2 1 FAM176 FAM176 family 1.6 7.4 9.9 2 7.1 9.9 1.0 1 Nucleo_P87 Nucleopolyhedrovirus capsid protein P87 1.8 7.8 9.4 2.4 7.4 9.4 1.1 1 DUF4746 Domain of unknown function (DUF4746) Domain annotation for each model (and alignments): >> E7 E7 protein, Early protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.8 4.2e-05 0.17 18 49 .. 183 214 .. 167 248 .. 0.68 2 ? -4.2 0.1 4 1.6e+04 54 68 .. 301 314 .. 299 318 .. 0.74 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 4.2e-05 X--S------XXXXXXXXXXXXXXXXXXXXEE CS E7 18 ldllceeelesedeeeeeedeptlkdktprrp 49 ++ +e+ e+e+eeeeee+e+++++k+ rr+ T004607_2 183 DSISKKEKEEEEEEEEEEEEEEEEEEKRRRRK 214 44555566666666666666555555555554 PP == domain 2 score: -4.2 bits; conditional E-value: 4 EEEXTTTXXEEEEEE CS E7 54 evaCprCeqklrlvv 68 +++C C+ ++++ + T004607_2 301 QTPCR-CDLNIQMGL 314 67887.998888765 PP >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 7.7 0.00018 0.72 48 84 .. 177 211 .. 165 221 .. 0.37 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00018 FAM176 48 rkdlkrlskkkkklkeesekasededeeeeeeeedss 84 +++ +r+s +kk+++ee+e +e+e+eeeeeeee+ T004607_2 177 QPRRQRDSISKKEKEEEEE--EEEEEEEEEEEEEKRR 211 3333333333333222221..2222222222222222 PP >> Nucleo_P87 Nucleopolyhedrovirus capsid protein P87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 9.9 0.00048 2 398 445 .. 175 222 .. 163 225 .. 0.51 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00048 Nucleo_P87 398 ptekrkRrrarklqelssdededssdekevDkekerkRRreeDkdfLr 445 + + r+ r + +++e +++e+e++++e+e ++e++r+RR+ fL+ T004607_2 175 ALQPRRQRDSISKKEKEEEEEEEEEEEEEEEEEEKRRRRKIKQIFFLH 222 344455555555555555555544555555555555555544445665 PP >> DUF4746 Domain of unknown function (DUF4746) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 9.4 0.00059 2.4 106 147 .. 178 219 .. 162 225 .. 0.48 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00059 DUF4746 106 paeeeeaeeeeeeeaveeeeeeeeeeeeeeedkeltktktvk 147 p ++++ +++e+e+ eeeeeeeeeeeeeee+++ k+k+++ T004607_2 178 PRRQRDSISKKEKEEEEEEEEEEEEEEEEEEKRRRRKIKQIF 219 333333333333333333334455555555566666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1417 (0.0869005); expected 326.1 (0.02) Passed bias filter: 900 (0.0551944); expected 326.1 (0.02) Passed Vit filter: 250 (0.0153318); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 2259.64 // Query: T004607_3 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 2551.30 // Query: T091598_1 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 3578.38 // Query: T091598_2 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 3573.69 // Query: T091598_3 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 3633.25 // Query: T138466_1 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 9479.40 // Query: T138466_2 [L=2451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-05 22.8 1.0 0.28 10.7 0.1 5.0 5 Pentapeptide Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.1 1.7e-05 0.28 2 25 .. 452 475 .. 452 480 .. 0.86 2 ? 1.6 0.0 0.013 2.1e+02 28 39 .. 536 547 .. 527 557 .. 0.59 3 ? 1.8 0.0 0.011 1.7e+02 3 24 .. 585 606 .. 585 607 .. 0.77 4 ! 2.1 0.0 0.009 1.5e+02 3 24 .. 673 694 .. 671 695 .. 0.79 5 ? -2.0 0.0 0.16 2.6e+03 19 28 .. 757 766 .. 746 768 .. 0.45 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 1.7e-05 B-TT-B-CCCCCCCCCCESEEECT CS Pentapeptide 2 nLsgAnLsganLsganlsgAnLtg 25 +Ls+++Ls +Ls+ +ls+ +L++ T138466_2 452 DLSRVDLSRVDLSREDLSRVDLSR 475 799999999999999999999986 PP == domain 2 score: 1.6 bits; conditional E-value: 0.013 -TT-EECCEEEC CS Pentapeptide 28 lsgAdLsganLs 39 ls+ dLs+++Ls T138466_2 536 LSRVDLSRVDLS 547 444444444443 PP == domain 3 score: 1.8 bits; conditional E-value: 0.011 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138466_2 585 LSRVDLSYMHQSRVDLSRVNLS 606 6788888888888888888886 PP == domain 4 score: 2.1 bits; conditional E-value: 0.009 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138466_2 673 LSRVDLSYMHQSRVDLSRVNLS 694 7888888888888888888886 PP == domain 5 score: -2.0 bits; conditional E-value: 0.16 ESEEECT-B- CS Pentapeptide 19 sgAnLtgAnl 28 s+ +L+++nl T138466_2 757 SRVDLSRVNL 766 4444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.67 # Mc/sec: 10465.51 // Query: T138466_3 [L=2451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.74 # Mc/sec: 9475.53 // Query: T000132_1 [L=2467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.70 # Mc/sec: 10082.38 // Query: T000132_2 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 9936.35 // Query: T000132_3 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.62 # Mc/sec: 11378.72 // Query: T227319_1 [L=1151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 4914.65 // Query: T227319_2 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 5393.37 // Query: T227319_3 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 5061.47 // Query: T138228_1 [L=8963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.55u 0.41s 00:00:02.96 Elapsed: 00:00:00.78 # Mc/sec: 32873.87 // Query: T138228_2 [L=8962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.09u 0.45s 00:00:03.54 Elapsed: 00:00:00.97 # Mc/sec: 26431.71 // Query: T138228_3 [L=8962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.67u 0.40s 00:00:03.07 Elapsed: 00:00:00.93 # Mc/sec: 27568.56 // Query: T070831_1 [L=2212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 9040.22 // Query: T070831_2 [L=2212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 11939.92 // Query: T070831_3 [L=2211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.65 # Mc/sec: 9731.22 // Query: T209437_1 [L=471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 2591.25 // Query: T209437_2 [L=471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2642.06 // Query: T209437_3 [L=470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2689.18 // Query: T342819_1 [L=2174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 594 (0.0364283); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 10911.31 // Query: T342819_2 [L=2174] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2174 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 556 (0.0340979); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 10911.31 // Query: T342819_3 [L=2173] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2173 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 597 (0.0366123); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 11302.88 // Query: T090346_1 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-47 157.3 26.0 2.8e-38 129.8 13.7 2.4 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 4.3 2.1e-15 3.3e-11 12 56 .. 148 192 .. 140 192 .. 0.90 2 ! 129.8 13.7 1.7e-42 2.8e-38 1 89 [] 179 266 .. 179 266 .. 0.98 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 2.1e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090346_1 148 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 192 566889*************************************97 PP == domain 2 score: 129.8 bits; conditional E-value: 1.7e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090346_1 179 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 266 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 7712.80 // Query: T090346_2 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7561.57 // Query: T090346_3 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 7276.22 // Query: T032257_1 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6722.95 // Query: T032257_2 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7128.72 // Query: T032257_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 6986.15 // Query: T174283_1 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-08 33.2 29.1 1.5e-06 28.6 10.0 4.5 4 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 10.0 8.9e-11 1.5e-06 35 90 .. 515 572 .. 472 573 .. 0.86 2 ? -2.8 0.6 0.54 8.8e+03 40 60 .. 593 611 .. 575 614 .. 0.48 3 ! 21.6 11.1 1.3e-08 0.00022 36 89 .. 1998 2053 .. 1992 2056 .. 0.81 4 ? -3.2 8.0 0.74 1.2e+04 49 78 .. 2812 2842 .. 2762 2858 .. 0.65 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 8.9e-11 FAM27 35 mreialwatGtirPkththtgthtqtdRereRnrqrl...RdrerRen....grhtrthartk 90 ++++++a+Gt++P + th qtdR+ +R+r+++ R+r+ Re rht th++t+ T174283_1 515 CKKPPSGAKGTCVPAN-----THAQTDRDSNRERRKE*eaRERDIRERhkwaHRHTDTHTHTH 572 5789************.....**************9666688887777567789999999987 PP == domain 2 score: -2.8 bits; conditional E-value: 0.54 FAM27 40 lwatGtirPkththtgthtqt 60 + ++P+ + +h +t T174283_1 593 GFCSPRLQPRG--ERAAHGHT 611 44445555544..33344443 PP == domain 3 score: 21.6 bits; conditional E-value: 1.3e-08 FAM27 36 reialwatGtirPkththtgthtqtdRereRnrqrlRd...rerRen....grhtrthart 89 +++++a+Gt++P + t q+dR+ +R+r ++R+ r+ Re rht+th++t T174283_1 1998 EKPPSGAKGTCVPAN-----TQAQMDRDSKRERWKEREgreRDIRERhkwaHRHTQTHTHT 2053 5799***********.....99**************9987755555534467788888876 PP == domain 4 score: -3.2 bits; conditional E-value: 0.74 FAM27 49 kththtgthtqtdRere....RnrqrlRdrerRe 78 +hth +ht+t+ re + R++++R T174283_1 2812 SQHTHAPAHTRTETGRE**teNE---NRNKRKRH 2842 46888888888877665442122...23334443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 18585.18 // Query: T174283_2 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-16 60.4 59.3 3.1e-09 37.1 17.9 5.0 7 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 0.4 1 1.6e+04 63 76 .. 146 159 .. 134 178 .. 0.43 2 ! 37.1 17.9 1.9e-13 3.1e-09 2 91 .] 482 572 .. 481 573 .. 0.69 3 ? -6.4 2.9 1 1.6e+04 69 85 .. 1830 1850 .. 1825 1854 .. 0.35 4 ! 31.9 14.7 8.1e-12 1.3e-07 2 91 .] 1964 2052 .. 1963 2054 .. 0.77 5 ? -6.5 3.7 1 1.6e+04 42 63 .. 2091 2115 .. 2088 2122 .. 0.59 6 ? -5.3 1.4 1 1.6e+04 65 80 .. 2375 2390 .. 2369 2401 .. 0.52 7 ! 25.3 10.7 9.2e-10 1.5e-05 8 79 .. 2775 2845 .. 2775 2856 .. 0.81 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 1 FAM27 63 ereRnrqrlRdrer 76 e+ R lRdr r T174283_2 146 EKPRAAENLRDRAR 159 33333333444333 PP == domain 2 score: 37.1 bits; conditional E-value: 1.9e-13 FAM27 2 htPkadprrkrLttglmtqaetkkeaeqkrq..aamreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRen..grhtrthartkt 91 h Pk++p++krL+tg++tq et++ea+ k++ a+ + +a a + +t th+ t t+ + + ++r+R+ + R+ ++t+th++t+t T174283_2 482 HKPKLEPPGKRLPTGHTTQEETRGEADHKKG*cARNHPPAQRAP--VSQQTRTHRRTEIVTESDGKS-EKREREISERDIsgHTDTQTHTHTHT 572 89*************************88877455444444444..445555565555555555544.45678877777655567777777776 PP == domain 3 score: -6.4 bits; conditional E-value: 1 FAM27 69 qrlRd..rerRen..grhtrt 85 q +R+ e R++ r+ + T174283_2 1830 QSKREdrAEARDQqdWRQCHH 1850 222222223333322334444 PP == domain 4 score: 31.9 bits; conditional E-value: 8.1e-12 FAM27 2 htPkadprrkrLttglmtqaetkkeaeqkrqa.amreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartkt 91 h Pk++p++krL+tg++tq et++ea+ +r+ + r+ +l ++ + +t h+ t + + + ++ +R+ + R+ ht th +t+t T174283_2 1964 HKPKLEPPGKRLPTGHTTQVETRGEAD-HRKG*RGRNHPLVQRAPVSQQTRRHRWTEIVKESDGK-SEKGEREISERDISGHTDTHRHTHT 2052 89*************************.6666778999999999998888777665555544444.3456889888888666666666665 PP == domain 5 score: -6.5 bits; conditional E-value: 1 FAM27 42 atGtirPkth...thtgthtqtdRe 63 a+G+ P++h t th +t R T174283_2 2091 AHGQTCPRHHkgtTFGETHGHTVRT 2115 5678888886222233466666655 PP == domain 6 score: -5.3 bits; conditional E-value: 1 FAM27 65 eRnrqrlRdrerReng 80 R++ + R r+ R+ T174283_2 2375 SRDTCKDRHRRVRDGA 2390 3555555555555543 PP == domain 7 score: 25.3 bits; conditional E-value: 9.2e-10 FAM27 8 prrkrLttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtq..tdRereRnrqrlRdrerRen 79 p++kr+t g+mtq+e ++e +qk+++ r+ ++ ++P t th th + ++ +r+R + R+r+ ++ T174283_2 2775 PPGKRMTPGHMTQTEMRGETHQKKGQGTRNRPSLP---MHPNTRTHPRTHGRklVESDRRRMKTEIRERDTTQT 2845 89****************************99975...789999999998753367788888888888776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.54 # Mc/sec: 19273.52 // Query: T174283_3 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 18259.12 // Query: T021945_1 [L=628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 3742.92 // Query: T021945_2 [L=628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 3822.56 // Query: T021945_3 [L=627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 3736.96 // Query: T110553_1 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 3796.56 // Query: T110553_2 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 3877.34 // Query: T110553_3 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3719.08 // Query: T172554_1 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.47 # Mc/sec: 6251.22 // Query: T172554_2 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5876.14 // Query: T172554_3 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5876.14 // Query: T298495_1 [L=1572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-09 34.5 0.8 2.1e-08 33.5 0.8 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.8 1.3e-12 2.1e-08 1 19 [] 1204 1222 .. 1204 1222 .. 0.98 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 1.3e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T298495_1 1204 SFAGTWMKLETIILSKLSQ 1222 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 8485.33 // Query: T298495_2 [L=1572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 8485.33 // Query: T298495_3 [L=1572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 8994.45 // Query: T252934_1 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3789.14 // Query: T252934_2 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 3713.36 // Query: T252934_3 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 3634.94 // Query: T002455_1 [L=3457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 17660.52 // Query: T002455_2 [L=3457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.55 # Mc/sec: 17981.62 // Query: T002455_3 [L=3457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 17350.68 // Query: T004138_1 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.52 # Mc/sec: 8351.42 // Query: T004138_2 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 8193.85 // Query: T004138_3 [L=1518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1447 (0.0887403); expected 326.1 (0.02) Passed bias filter: 363 (0.0222617); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 7618.84 // Query: T381764_1 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 5365.41 // Query: T381764_2 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 5803.40 // Query: T381764_3 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-05 24.2 0.3 5.8e-05 23.6 0.3 1.1 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.3 3.5e-09 5.8e-05 35 99 .. 875 938 .. 867 946 .. 0.91 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 3.5e-09 VCX_VCY 35 ttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 ++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381764_3 875 IPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 938 699**********************************************99987.7777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5924.30 // Query: T215851_1 [L=1936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 8933.17 // Query: T215851_2 [L=1936] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1936 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 7800.80 // Query: T215851_3 [L=1935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-36 122.1 24.5 9.5e-36 122.1 24.5 4.1 4 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.1 0.03 4.9e+02 22 46 .. 224 248 .. 211 257 .. 0.85 2 ! 122.1 24.5 5.8e-40 9.5e-36 1 91 [] 316 406 .. 316 406 .. 0.98 3 ? -2.9 2.4 0.57 9.3e+03 51 60 .. 1290 1299 .. 1287 1301 .. 0.49 4 ? -4.6 6.5 1 1.6e+04 61 76 .. 1597 1612 .. 1589 1619 .. 0.81 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.03 FAM27 22 etkkeaeqkrqaamreialwatGti 46 t ++a+++r+++ r++a++ G + T215851_3 224 TTMRKAQRRRGKQHRNPASGLPGWC 248 5778999999*******99999887 PP == domain 2 score: 122.1 bits; conditional E-value: 5.8e-40 FAM27 1 shtPkadpr.rkrLttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartkt 91 +h kadpr rkrLttglmtqaet+ke + +rqaam+e+alw tG+i+Pkth htgthtqt+Re+eRn+qrlRdrerRengrht+t ++ +t T215851_3 316 FHAAKADPRgRKRLTTGLMTQAETQKEVQ-QRQAAMQETALWFTGHIQPKTHKHTGTHTQTHREWERNTQRLRDRERRENGRHTHTQTKGHT 406 6899************************9.**********************************************************9987 PP == domain 3 score: -2.9 bits; conditional E-value: 0.57 FAM27 51 hthtgthtqt 60 h+ht tht t T215851_3 1290 HAHTHTHTLT 1299 3444444433 PP == domain 4 score: -4.6 bits; conditional E-value: 1 FAM27 61 dRereRnrqrlRdrer 76 +++r+R r+r Rdr + T215851_3 1597 KKDRRRRRRRPRDRGK 1612 5788888889998877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.79 # Mc/sec: 7007.22 // Query: T036665_1 [L=1546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.46 9.9 5.2 1.5 8.3 5.2 1.9 1 CLLAC CLLAC-motif containing domain Domain annotation for each model (and alignments): >> CLLAC CLLAC-motif containing domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 5.2 9.3e-05 1.5 3 16 .. 1212 1225 .. 1210 1226 .. 0.90 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 9.3e-05 CLLAC 3 SLwkiFLvCLLACl 16 S +++FL CLLAC+ T036665_1 1212 SFLSFFLSCLLACF 1225 899**********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 6701.28 // Query: T036665_2 [L=1545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.73 # Mc/sec: 6054.77 // Query: T036665_3 [L=1545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 6499.97 // Query: T103728_1 [L=3404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.34s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 13715.87 // Query: T103728_2 [L=3404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.82 # Mc/sec: 11875.93 // Query: T103728_3 [L=3404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.7 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.057 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.35 11.3 5.0 0.7 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.43 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.7 20.5 1.4e-145 2.9e-142 1 368 [] 2959 3294 .. 2959 3294 .. 0.97 Alignments for each domain: == domain 1 score: 473.7 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103728_3 2959 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3044 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103728_3 3045 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3101 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103728_3 3102 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3194 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103728_3 3195 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3287 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103728_3 3288 QLLQNHA 3294 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.057 1 72 [. 3329 3398 .. 3329 3403 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103728_3 3329 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3398 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2983 3106 .. 2949 3113 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103728_3 2983 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3076 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103728_3 3077 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3106 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.4e-05 0.11 3 94 .. 3024 3113 .. 3022 3115 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.4e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103728_3 3024 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3113 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.7 3 95 .. 3010 3111 .. 3009 3113 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103728_3 3010 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3104 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103728_3 3105 QEIWDYV 3111 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00037 0.74 30 124 .. 3012 3106 .. 3008 3113 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00037 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103728_3 3012 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3106 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.6e+03 77 96 .. 1034 1048 .. 1020 1051 .. 0.43 2 ? 15.4 2.1 7.1e-06 0.014 44 96 .. 3017 3069 .. 3010 3075 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103728_3 1034 SKKKKRKKERKKR-----KK 1048 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7.1e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103728_3 3017 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3069 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3042 3101 .. 3022 3109 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103728_3 3042 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3101 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 918 (0.0562983); expected 326.1 (0.02) Passed bias filter: 364 (0.0223231); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.75u 0.39s 00:00:02.14 Elapsed: 00:00:00.69 # Mc/sec: 14113.43 // Query: T367342_1 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 4442.38 // Query: T367342_2 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 3990.62 // Query: T367342_3 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 3859.78 // Query: T259483_1 [L=1099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 12.4 4.0 11 6.4 0.0 3.9 4 DUF732 Protein of unknown function (DUF732) Domain annotation for each model (and alignments): >> DUF732 Protein of unknown function (DUF732) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.2 0.092 1.5e+03 80 93 .. 559 572 .. 558 574 .. 0.87 2 ? 6.4 0.0 0.00067 11 71 93 .. 616 638 .. 601 640 .. 0.87 3 ? 3.9 0.0 0.0039 63 71 93 .. 670 692 .. 659 694 .. 0.87 4 ? -0.8 0.0 0.12 1.9e+03 70 92 .. 721 745 .. 711 748 .. 0.68 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.092 DUF732 80 qfvgaAvsayCPeq 93 q+++ A++++CP T259483_1 559 QLTATAQTHLCPSV 572 7899********75 PP == domain 2 score: 6.4 bits; conditional E-value: 0.00067 DUF732 71 sglspeqaaqfvgaAvsayCPeq 93 s ls++q++q+++ A +++CP+ T259483_1 616 SPLSQRQSHQLTATARTHLCPTV 638 67899****************85 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0039 DUF732 71 sglspeqaaqfvgaAvsayCPeq 93 s ls++q+ q+++ A +++CP T259483_1 670 SPLSQRQSPQLTATARTHLCPSV 692 67899****************75 PP == domain 4 score: -0.8 bits; conditional E-value: 0.12 DUF732 70 nsglspeqaaqfvga..AvsayCPe 92 s ls++q+ q+++ A +++CP T259483_1 721 DSPLSQRQSPQLTATatARTHLCPS 745 4667777777777651156799*97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.71 # Mc/sec: 4428.24 // Query: T259483_2 [L=1099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 5822.32 // Query: T259483_3 [L=1098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.9 1.5 14 6.0 0.0 3.6 4 DUF732 Protein of unknown function (DUF732) Domain annotation for each model (and alignments): >> DUF732 Protein of unknown function (DUF732) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.0045 74 70 93 .. 565 588 .. 546 590 .. 0.82 2 ? -2.3 0.0 0.34 5.5e+03 81 92 .. 644 655 .. 629 658 .. 0.66 3 ? 6.0 0.0 0.00085 14 71 93 .. 686 708 .. 678 710 .. 0.87 4 ? -0.1 0.0 0.069 1.1e+03 71 92 .. 740 763 .. 731 766 .. 0.74 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.0045 DUF732 70 nsglspeqaaqfvgaAvsayCPeq 93 s ls++q+ q+++ A +++CP T259483_3 565 DSPLSQRQSPQLTATAGTHLCPSV 588 678999****************75 PP == domain 2 score: -2.3 bits; conditional E-value: 0.34 DUF732 81 fvgaAvsayCPe 92 ++ A +++CP T259483_3 644 ATATARTHLCPS 655 355677899997 PP == domain 3 score: 6.0 bits; conditional E-value: 0.00085 DUF732 71 sglspeqaaqfvgaAvsayCPeq 93 s ls++q++q+++ A +++CP T259483_3 686 SPLSQRQSHQLTATARTHLCPSV 708 67899****************75 PP == domain 4 score: -0.1 bits; conditional E-value: 0.069 DUF732 71 sglspeqaaqfvgaAv..sayCPe 92 s ls++q++q+++ A+ +++CP T259483_3 740 SPLSQRQSHQLTATATagTHLCPS 763 567889999998876633699997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.75 # Mc/sec: 4188.26 // Query: T368462_1 [L=2457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.88 # Mc/sec: 7987.57 // Query: T368462_2 [L=2457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.75 # Mc/sec: 9372.08 // Query: T368462_3 [L=2456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.67 # Mc/sec: 10486.86 // Query: T294300_1 [L=3611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 921 (0.0564823); expected 326.1 (0.02) Passed bias filter: 468 (0.0287011); expected 326.1 (0.02) Passed Vit filter: 119 (0.00729793); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.39u 0.40s 00:00:02.79 Elapsed: 00:00:01.02 # Mc/sec: 10127.90 // Query: T294300_2 [L=3611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0054 17.1 1.8 0.26 11.7 0.4 2.3 2 YmaF YmaF family Domain annotation for each model (and alignments): >> YmaF YmaF family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 0.4 1.6e-05 0.26 3 82 .. 1058 1140 .. 1056 1142 .. 0.80 2 ! 9.2 0.4 9.6e-05 1.6 4 75 .. 1113 1187 .. 1111 1192 .. 0.74 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.6e-05 YmaF 3 eHvHefesstklaeeeeeeHnHriagvtgeaiklgksHvHkveeltdtfed....HfHeieettgpaievgngkHvHlvkgktt 82 +H H+ ++ t ++ e H+H tg +++ g H H+ ++ t ++ H+H+ ++ tg +++ g H+H k +t T294300_2 1058 HHSHSPKQATGCSLPEGGLHTHSPKQATGCSLPEGGLHTHSPKQATGCSLPegglHTHSPKQATGCSLPE-GGFHTHSPKQATG 1140 6899999999999889999999999999999999999999999999887433344999999999999886.5688888777665 PP == domain 2 score: 9.2 bits; conditional E-value: 9.6e-05 YmaF 4 HvHefesstklaeeeeeeHnHriagvtgeaiklgksHvHkveeltdtfed....HfHeieettgpaievgngkHvH 75 H H+ ++ t ++ e H+H tg +++ g H H+ ++ t ++ H+H+ ++ tg +++ g H+H T294300_2 1113 HTHSPKQATGCSLPEGGFHTHSPKQATGCSLPEGGLHTHSPKQATGCSLPegglHTHSPKQATGCSLPE-GGLHTH 1187 788888888888788888888888888888888888888888888876422344888888888888775.456766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.40u 0.41s 00:00:01.80 Elapsed: 00:00:00.93 # Mc/sec: 11108.02 // Query: T294300_3 [L=3610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1027 (0.062983); expected 326.1 (0.02) Passed bias filter: 517 (0.0317061); expected 326.1 (0.02) Passed Vit filter: 121 (0.00742058); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.44u 0.38s 00:00:02.82 Elapsed: 00:00:00.80 # Mc/sec: 12909.50 // Query: T036663_1 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.74 # Mc/sec: 5667.54 // Query: T036663_2 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 6989.96 // Query: T036663_3 [L=1466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.62 # Mc/sec: 6764.48 // Query: T232592_1 [L=1950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 8084.95 // Query: T232592_2 [L=1949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 7744.11 // Query: T232592_3 [L=1949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.60 # Mc/sec: 9292.93 // Query: T371835_1 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 3797.52 // Query: T371835_2 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-37 127.6 0.4 4.6e-37 127.1 0.4 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.1 0.4 2.8e-41 4.6e-37 1 176 [] 323 510 .. 323 510 .. 0.94 Alignments for each domain: == domain 1 score: 127.1 bits; conditional E-value: 2.8e-41 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldvey..ksnrkawltssifeeWLekvfdkrve.....kaekrkvlLllddsrshe.tve 92 k+rlt ll+anaag+ kLkp++i+++k+ +a kn kl+ + k+++k w+t+++f++W+++++++++e k+ k+lLl+d++++ + T371835_2 323 KDRLTFLLGANAAGDFKLKPMLIYHSKTVKALKN---YAKLTLPIl*KWKNKVWMTAHLFTAWFTEYLKPTLEtycseKKIPFKILLLIDNAPGPPrDLR 419 689*******************************...555555555667899*****************************************9994555 PP DDE_1 93 lsecelqniklvflPasstsllqPldqgvvselKarYrrqllkallalqnrlsk..........eqkkltllnalkfikkAwnavsketIksaw 176 ++++i++vf+Pa++ts+l P+dqg+ ++K++Y ++++ +++ + nr+s+ + + +l+a+k+i ++w++v+ +t++++w T371835_2 420 E---MYREINAVFMPANTTSILYPMDQGITLTFKSYYLKNTFCKAITAINRDSSdgsgqnklktYWRGFAILDAIKNIHDSWEEVKISTLTEVW 510 5...9************************************************9*********99**************************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.68 # Mc/sec: 3462.45 // Query: T371835_3 [L=822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0091 15.9 0.2 0.024 14.5 0.0 1.8 2 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.58 9.5e+03 16 28 .. 170 182 .. 167 183 .. 0.81 2 ! 14.5 0.0 1.5e-06 0.024 11 36 .. 198 225 .. 196 240 .. 0.79 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.58 C.CT---SCHHHH CS HTH_Tnp_Tc5 16 rergapitgelir 28 +++ p++ ++i+ T371835_3 170 IKSDTPVNTQMII 182 67889******97 PP == domain 2 score: 14.5 bits; conditional E-value: 1.5e-06 HHHHHC.CT---SCHHHHHHHHHHH..H CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela..s 36 Wi++++ +++p++++li++k + l+ T371835_3 198 WIEDQTSHNIPLSQSLIQRKTLTLFhsM 225 *********************9986431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 4199.29 // Query: T106782_1 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 6399.78 // Query: T106782_2 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 5316.74 // Query: T106782_3 [L=1207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 5569.39 // Query: T293984_1 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.49 # Mc/sec: 9376.52 // Query: T293984_2 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 7531.96 // Query: T293984_3 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 6559.47 // Query: T099749_1 [L=991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 4725.14 // Query: T099749_2 [L=991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 4805.22 // Query: T099749_3 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.65 7.9 1.4 1.1 7.1 1.4 1.2 1 Sporozoite_P67 Sporozoite P67 surface antigen Domain annotation for each model (and alignments): >> Sporozoite_P67 Sporozoite P67 surface antigen # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 1.4 6.7e-05 1.1 184 230 .. 79 125 .. 70 181 .. 0.84 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 6.7e-05 Sporozoite_P67 184 sgvvgvpGlgvpGvGvpGvggvgvlpgvgvprvgvapgvGvgglggv 230 + v g+p + pG+ v + g+gv+ +p +++ap++ + glgg T099749_3 79 PSVSGSPAVRSPGLWVLPGAGAGVARLATLPAAAIAPQAFIPGLGGS 125 6789**********9865599*********************99996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 4883.14 // Query: T181578_1 [L=2934] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2934 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.72 # Mc/sec: 11657.88 // Query: T181578_2 [L=2933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.83 # Mc/sec: 10109.41 // Query: T181578_3 [L=2933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.28s 00:00:01.39 Elapsed: 00:00:00.67 # Mc/sec: 12523.60 // Query: T172259_1 [L=6865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.40s 00:00:02.37 Elapsed: 00:00:00.76 # Mc/sec: 25841.58 // Query: T172259_2 [L=6865] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-05 22.7 3.2 6.5e-05 22.7 3.2 3.1 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 3.2 4e-09 6.5e-05 2 18 .] 1483 1499 .. 1482 1499 .. 0.95 2 ? -0.4 1.0 0.081 1.3e+03 5 17 .. 1509 1520 .. 1505 1521 .. 0.75 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 4e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T172259_2 1483 ACYKCQKSGHQAKECPQ 1499 7***************7 PP == domain 2 score: -0.4 bits; conditional E-value: 0.081 SSSSSSSTTTTST CS zf-CCHC 5 nCGepGHiardCp 17 CG+p H+++dC+ T172259_2 1509 ICGGP-HWKSDCS 1520 56666.******7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6865 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.99u 0.36s 00:00:02.35 Elapsed: 00:00:00.93 # Mc/sec: 21117.85 // Query: T172259_3 [L=6864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-25 90.1 3.2 1.6e-25 89.6 0.9 1.9 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.011 15.1 0.0 0.019 14.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.1 0.031 2.6e+02 138 153 .. 5828 5843 .. 5826 5847 .. 0.89 2 ! 89.6 0.9 2e-29 1.6e-25 256 347 .. 5942 6033 .. 5921 6033 .. 0.92 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.031 ..XXHHHHHHHHHHHH CS Transposase_22 138 daslssrideleervs 153 sl++ri+++eer+s T172259_3 5828 HQSLNNRINQVEERIS 5843 579************9 PP == domain 2 score: 89.6 bits; conditional E-value: 2e-29 SSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEE.SSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 256 tkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsii.idGeikvfidktklrdylstrPal 347 k++ k++ilk +rek ++t+ G P+ l+ d+s etlk+rrew + +++lke++f Pr++yPak+ + ik f k+klrd++strP l T172259_3 5942 LKIKGKERILKVTREKKQITYNGSPVCLAVDFSVETLKSRREWHNTFKVLKERNFYPRIVYPAKIF-F*HEEKIKTFPGKQKLRDFISTRPVL 6033 57899***********************************************************85.455779******************87 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 2.3e-06 0.019 138 181 .. 1361 1404 .. 1354 1404 .. 0.94 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.3e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + + +t dp+ + + + + fi+qsa+di+ T172259_3 1361 KNPAQFMARLAATLKCFTALDPKRSKGHLILNIHFITQSAPDIK 1404 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6864 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.02u 0.38s 00:00:02.40 Elapsed: 00:00:00.85 # Mc/sec: 23102.04 // Query: T380375_1 [L=1749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 7468.05 // Query: T380375_2 [L=1749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 9097.44 // Query: T380375_3 [L=1749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 6949.43 // Query: T377272_1 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-07 30.5 0.0 1.3e-06 28.6 0.0 1.8 2 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.0 7.7e-11 1.3e-06 5 56 .. 420 472 .. 417 481 .. 0.84 2 ? -2.0 0.0 0.2 3.3e+03 2 25 .. 868 891 .. 867 905 .. 0.77 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 7.7e-11 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 v+Y+DGs++ n +ge++ag+ v+ + + +++l++ ++++++EL+A+i aL+ T377272_1 420 VLYVDGSSFINpQGERCAGYaVVTLD-TVVEARSLPQGTSAQKTELIALIWALE 472 89*********99999****777766.33556778899***************8 PP == domain 2 score: -2.0 bits; conditional E-value: 0.2 .SEEEEEEEEEECTTTEEEEEEEE CS RNase_H 2 kavvvYtDGsclgnsgeggagavl 25 k++++ +D+++ ns++ g+g++ T377272_1 868 KQITLRCDACAAINSKKLGIGCGS 891 678999************999954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 7980.21 // Query: T377272_2 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-17 61.4 0.0 1.1e-16 60.9 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 1.5e-08 34.6 0.7 3.3e-08 33.5 0.7 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.9 0.0 1.4e-20 1.1e-16 1 179 [. 39 173 .. 39 184 .. 0.90 Alignments for each domain: == domain 1 score: 60.9 bits; conditional E-value: 1.4e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T377272_2 39 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTVPNWYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 113 69*********7....7***********.........99999999999555............55788******************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee 179 ++ +++y++ +lp G+++SP++f ++ + l+++ +r g+ ll+Y+DD+++ + + + T377272_2 114 -------------------ESGVTTQYTWIRLPKGFKNSPTIFGEALAQDLQKFPTRDLGCMLLQYVDDLFLGHPTAVR 173 ...................34569**********************************************998877655 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.7 4.1e-12 3.3e-08 1 39 [] 509 547 .. 509 547 .. 0.98 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 4.1e-12 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll ++++ ++++++++V+++C++C+ T377272_2 509 HETTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCR 547 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.82 # Mc/sec: 5547.22 // Query: T377272_3 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-08 33.2 0.0 7.9e-08 32.4 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.0 4.8e-12 7.9e-08 7 87 .. 572 648 .. 568 660 .. 0.92 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 4.8e-12 rve 7 lwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialle.ravarfggvepervlsDngseytskafrefl 87 ++qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l + rfg p+ + sDng+++++ +++++ T377272_3 572 WIQVDFTEMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTRVLL*DLIPRFGL--PLWIGSDNGPAFVADLVQKMA 648 58********..9999***********************.***********9*******..*************88777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 6784.86 // Query: T265790_1 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 623 (0.0382068); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 3281.20 // Query: T265790_2 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-22 79.7 2.0 2.9e-22 78.9 2.0 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.9 2.0 1.8e-26 2.9e-22 230 328 .. 79 186 .. 77 194 .. 0.86 Alignments for each domain: == domain 1 score: 78.9 bits; conditional E-value: 1.8e-26 -EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT...........--- CS Transposase_22 230 iiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekk...........fqP 312 i e+ ++Pnr++ kr s+ hii++ +kv+ + a + k vt+kG Pirlt ++sa tl+arrew d++++lk kk + P T265790_2 79 EIEEVLKSPNRYNAKRISALHIILKRSKVK*I--NLKTAEKKKYLVTYKGTPIRLTMNFSAGTLQARREWDDMLKVLKKKKkkkkkkkkktpCHP 171 599**********************9998554..3456889999*********************************87644445566677799* PP EEETTTEEEEESSSSE CS Transposase_22 313 rllyPaklsiiidGei 328 ++lyPakls+i +Gei T265790_2 172 KILYPAKLSFI-NGEI 186 *********96.6887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 743 (0.045566); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.65 # Mc/sec: 2473.52 // Query: T265790_3 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-19 69.1 2.3 5.2e-19 68.5 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.5 2.3 3.2e-23 5.2e-19 53 215 .. 371 550 .. 355 558 .. 0.86 Alignments for each domain: == domain 1 score: 68.5 bits; conditional E-value: 3.2e-23 ...........HCCHTS--EE.EEEEBCCGCCCSBB-GGGGGGG-EEET..........................TEEEEESB--ST-TTHHHHHHHHHH CS RVT_1 53 dav..eellkalkkkkkakll.lklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvnge.esegryekkglpqGsvlSPllfnlfmn 148 ++ + ++++++++k++++l +++D kaFd++++++ ++ l++++++ + +++ik+++ + ++++ +ng+ + + + + ++qG++l llf +m+ T265790_3 371 HQQkiNIIHHINRRTKSKTILsVSIDTVKAFDTIQHPFMMKALNKLGLKGTNLKIIKAIYDKLTANIILNGKkKLKVFLLRTLIRQGGPLLLLLFITVME 470 333446777777777777544268*********************************************999999************************* PP HHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE........ESSE CS RVT_1 149 ellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlfsg...kseev 215 l r +rk+ ++v+l++ aDD+ ++ ++++ ++ll+ + ++ + +g+k+n K++++l+++ ++e+ T265790_3 471 VLVRAIRKKKerkdnqigkEEVKLSLIADDMSLYLEKPKVfTKKLLDLTCKFNEVVGYKVNIPKSEVFLYTNneiAKKEM 550 ********99***************************777699999999999999*************983335544444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 718 (0.0440329); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 2593.20 // Query: T175225_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 4436.71 // Query: T175225_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 4508.27 // Query: T175225_3 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 4217.42 // Query: T276793_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.63 # Mc/sec: 12097.22 // Query: T276793_2 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.28s 00:00:01.34 Elapsed: 00:00:00.57 # Mc/sec: 13140.09 // Query: T276793_3 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 13370.62 // Query: T103727_1 [L=3352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 17124.11 // Query: T103727_2 [L=3352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.8e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.029 14.5 0.0 0.056 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.059 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.059 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.68 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.73 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 2.8 8.1 7.4 4.8 7.3 6.6 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.8e-142 1 368 [] 2907 3242 .. 2907 3242 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103727_2 2907 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 2992 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103727_2 2993 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3049 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103727_2 3050 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3142 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103727_2 3143 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3235 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103727_2 3236 QLLQNHA 3242 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.7e-05 0.056 1 72 [. 3277 3346 .. 3277 3351 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.7e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103727_2 3277 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3346 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2931 3054 .. 2897 3061 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103727_2 2931 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3024 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103727_2 3025 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3054 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 2972 3061 .. 2970 3063 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103727_2 2972 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3061 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.68 3 95 .. 2958 3059 .. 2957 3061 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103727_2 2958 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3052 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103727_2 3053 QEIWDYV 3059 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.73 30 124 .. 2960 3054 .. 2956 3061 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103727_2 2960 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3054 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 2.1 2.7 5.5e+03 77 96 .. 982 996 .. 968 999 .. 0.43 2 ? 15.4 2.1 6.9e-06 0.014 44 96 .. 2965 3017 .. 2958 3023 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103727_2 982 SKKKKRKKERKKR-----KK 996 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 6.9e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103727_2 2965 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3017 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 6.6 0.0024 4.8 28 89 .. 2990 3049 .. 2970 3057 .. 0.71 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0024 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103727_2 2990 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3049 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 905 (0.055501); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.61 # Mc/sec: 15720.50 // Query: T103727_3 [L=3351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 17430.26 // Query: T035222_1 [L=2714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 14649.61 // Query: T035222_2 [L=2714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 14378.32 // Query: T035222_3 [L=2713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 14111.69 // Query: T317331_1 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.50 # Mc/sec: 11426.16 // Query: T317331_2 [L=1997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 11202.11 // Query: T317331_3 [L=1996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 10981.19 // Query: T124670_1 [L=2399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 12709.50 // Query: T124670_2 [L=2398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 13192.83 // Query: T124670_3 [L=2398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 12943.91 // Query: T084510_1 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 426 (0.0261254); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.54 # Mc/sec: 16719.96 // Query: T084510_2 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 16415.96 // Query: T084510_3 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.53 # Mc/sec: 17035.43 // Query: T368485_1 [L=1004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 6111.22 // Query: T368485_2 [L=1004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5983.90 // Query: T368485_3 [L=1003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 5626.30 // Query: T008111_1 [L=691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 4118.40 // Query: T008111_2 [L=691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 4206.03 // Query: T008111_3 [L=690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 101 (0.00619404); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 4199.94 // Query: T378694_1 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 6484.55 // Query: T378694_2 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6743.39 // Query: T378694_3 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6478.94 // Query: T372558_1 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 5418.41 // Query: T372558_2 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-19 68.7 0.1 5.6e-19 68.1 0.1 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.1 0.1 3.4e-23 5.6e-19 308 367 .. 810 871 .. 805 872 .. 0.97 Alignments for each domain: == domain 1 score: 68.1 bits; conditional E-value: 3.4e-23 TT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 k+ qPr++yPakls++++ eik f k++lrd+++trPa ++llke + er++ yq+l+++ T372558_2 810 KNSQPRVSYPAKLSFLSEEEIKSFTVKQMLRDFVTTRPASQELLKEalNVERNNWYQPLQKH 871 689*********************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 5210.01 // Query: T372558_3 [L=946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-71 238.5 25.0 1.1e-69 235.0 25.0 2.0 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.013 15.9 8.1 0.013 15.9 8.1 1.9 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.14 11.3 6.3 0.21 10.7 6.3 1.2 1 CorA CorA-like Mg2+ transporter protein 0.24 11.3 2.9 0.47 10.3 2.9 1.4 1 DUF1664 Protein of unknown function (DUF1664) 0.53 10.4 8.0 1.4 9.1 8.0 1.7 1 ABC_tran_CTD ABC transporter C-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 235.0 25.0 3.3e-73 1.1e-69 2 297 .. 539 800 .. 536 820 .. 0.88 Alignments for each domain: == domain 1 score: 235.0 bits; conditional E-value: 3.3e-73 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...... CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiik.ek 91 Gk + +k +nsk ++ s+P ++ s a e+++++k+f+e+ + d+++ + ++lke + +++ke + k ++e + i ek T372558_3 539 GKNR---RKKAENSKNQNVSSPKDQN-SLAAR--EQNWMEKEFDEFTEVDFRRwviTNSSKLKEHVLTQCKEAKnLGKRLDELLTR---ITS*EK 624 5555...67889*******9997655.44444..9*****************966668899***********87555666653222...112333 PP .............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 92 qentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdt 186 + + ++++elk+ ++el++ s++s+i+++eer+s +ed+++ei++e rek k +qslq+i+d+ T372558_3 625 N------I----NDMMELKSTARELREAYT------------------SINSQINQVEERISEIEDQLNEIKQEDNIREKSEK--KQSLQEIRDY 689 3......2....378************998..................*******************************9987..69******** PP HTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEE CS Transposase_22 187 vkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPi 281 vk Pnl liGv+es+ e+++klen+l++ii+en Pnl +++n++iqei rtP r++ +ra++rhii+r+tkv+ k+k+l+a+rekGrvt kG Pi T372558_3 690 VKNPNLHLIGVPESDGENGTKLENTLQDIIQENIPNLTRQINIQIQEILRTPLRHSLRRATPRHIIIRFTKVEIKEKMLRAAREKGRVTHKGGPI 784 *********************************************************************************************** PP EEEE---HHHHHHHHH CS Transposase_22 282 rltadlsaetlkarre 297 rlta ls etl arre T372558_3 785 RLTAHLSVETLLARRE 800 **************96 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.9 8.1 4.1e-06 0.013 6 96 .. 594 691 .. 592 693 .. 0.86 2 ? -1.8 0.1 1.3 4.3e+03 43 67 .. 708 733 .. 702 773 .. 0.64 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.1e-06 Syntaxin-6_N 6 vkeeVqkslnkleslyrrweelledtss.s....tseeldetrteLrkalrsiewdledLeetvriveknpskfkide..kelsrrrafveevreev 95 ke V + +++++l +r+ ell+ +s + el++t +eLr+a+ si+ +++++ee ++ +e + ++ k ++ +e s++++ ++e+r+ v T372558_3 594 LKEHVLTQCKEAKNLGKRLDELLTRITS*EkninDMMELKSTARELREAYTSINSQINQVEERISEIEDQLNEIKQEDniREKSEKKQSLQEIRDYV 690 689999999**********999999877735777999******************************9977775554424799999********999 PP Syntaxin-6_N 96 k 96 k T372558_3 691 K 691 7 PP == domain 2 score: -1.8 bits; conditional E-value: 1.3 Syntaxin-6_N 43 rteLrkalrsi.ewdledLeetvriv 67 t+L+++l++i ++++ +L + ++i T372558_3 708 GTKLENTLQDIiQENIPNLTRQINIQ 733 57888888886245677888777654 PP >> CorA CorA-like Mg2+ transporter protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 6.3 6.5e-05 0.21 113 211 .. 636 733 .. 595 740 .. 0.79 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 6.5e-05 CorA 113 yrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrrala.pnrevlkrllakaddkllddedkeylrdlldelerllemleal 211 +r l+e +++ ++ ++ee++ e+ed+l++ ++++ +re ++ +++l ++r++++ pn ++ + + +d+++ ++ ++ + + +++++ +l ++++++ T372558_3 636 ARELREAYTSINSQINQVEERISEIEDQLNEIKQEDNIREKSEKKQSLQEIRDYVKnPNLHLI-GVPE-SDGENGTKLENTLQDIIQENIPNLTRQINIQ 733 5567888889999*****************************************972566666.7777.7777777666666666666666677777765 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 2.9 0.00014 0.47 80 122 .. 627 669 .. 587 695 .. 0.56 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00014 DUF1664 80 eiskeikeevtevredlseikedvesvkeavegLeskleeiee 122 + e+k+ e+re ++i++++++v+e ++++e +l+ei++ T372558_3 627 NDMMELKSTARELREAYTSINSQINQVEERISEIEDQLNEIKQ 669 3333344444444444444444444444444444444444433 PP >> ABC_tran_CTD ABC transporter C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 8.0 0.00044 1.4 4 55 .. 636 685 .. 633 688 .. 0.83 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00044 ABC_tran_CTD 4 ykeqre.leeleaeIeaLEaeiaeleaeladpelysdpeklaelsaeleelea 55 +e re + + ++I++ E++i+e+e++l++ ++++ + e s++++ l++ T372558_3 636 ARELREaYTSINSQINQVEERISEIEDQLNEI---KQEDNIREKSEKKQSLQE 685 5566665778********************66...577889999999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1673 (0.1026); expected 326.1 (0.02) Passed bias filter: 468 (0.0287011); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 5011.75 // Query: T367379_1 [L=2802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 14314.37 // Query: T367379_2 [L=2801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 500 (0.0306636); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14309.26 // Query: T367379_3 [L=2801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 13581.67 // Query: T316863_1 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.9 6.6 18.6 7 6.3 9.3 3.0 4 IL28A Interleukin-28A 7 6.6 13.2 20 5.1 0.1 4.9 5 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> IL28A Interleukin-28A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.4 0.017 1.4e+02 81 110 .. 100 129 .. 94 149 .. 0.72 2 ? 6.3 9.3 0.00086 7 33 114 .. 127 208 .. 114 227 .. 0.72 3 ? 5.6 11.2 0.0015 12 32 130 .. 155 256 .. 149 260 .. 0.83 4 ? 2.6 1.1 0.012 96 76 115 .. 227 266 .. 223 279 .. 0.75 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.017 HHHHHHHHHHHHHHHHHHHTTT-------S CS IL28A 81 aevldqpLetLrhihsdlqacveaqptadp 110 ++ ++p +L+hi+++l++ ++++++ + T316863_1 100 HNSTQRPKLMLTHIKTQLRTTSKTHTHTHQ 129 566789999**********97776644333 PP == domain 2 score: 6.3 bits; conditional E-value: 0.00086 BSS--BSS-SS-TT--GCGS-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------SHHHH CS IL28A 33 lkdrkcssrlfprkwdlrqlqvseRlvaleaelaltlkvLeavtdsalaevldqpLetLrhihsdlqacveaqptadprpsg 114 +++ + s ++ +++ + + + ++R++++ +++ l+ +++++++ +++ ++p tL+hi+++l++ +++++++ ++ T316863_1 127 THQDTTSHNIQNSRSHTSKHNFTQRPKLTLTHIKIRLHTTSKTHAHTHQNFTQRPKLTLTHIKTQLRTTSKTHTHNQNTTAH 208 445555566667777778889999*******************************************988776555544322 PP == domain 3 score: 5.6 bits; conditional E-value: 0.0015 SBSS--BSS-SS-TT--GCGS-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------SH...HHHHHHHHHHHHHSCCC CS IL28A 32 llkdrkcssrlfprkwdlrqlqvseRlvaleaelaltlkvLeavtdsalaevldqpLetLrhihsdlqacveaqptadpr...psgrlrhwLhrLqeakk 128 l+++k + + ++++ ++ + ++R++++ ++ l+ +++++++++++++ p tL+hi+++l++ + +t+ p+ l h +L++a+k T316863_1 155 TLTHIKIRLHTTSKTHAHTHQNFTQRPKLTLTHIKTQLRTTSKTHTHNQNTTAHSPKLTLTHIKTQLRTSKTHTHTRHNFtqrPKLTLTHIKTQLHTASK 254 567788888888899999999999********************************************98877766654333477788888888999888 PP TS CS IL28A 129 ke 130 + T316863_1 255 TH 256 76 PP == domain 4 score: 2.6 bits; conditional E-value: 0.012 HHHHHHHHHHHHHHHHHHHHHHHHTTT-------SHHHHH CS IL28A 76 tdsalaevldqpLetLrhihsdlqacveaqptadprpsgr 115 ++++ +++ ++p tL+hi+++l++ +++ ++ +++ ++ T316863_1 227 HTHTRHNFTQRPKLTLTHIKTQLHTASKTHAHTHQNTMSK 266 6677889999**************9888776655554443 PP >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.1 0.048 4e+02 18 36 .. 105 123 .. 103 123 .. 0.87 2 ? 1.6 0.1 0.032 2.6e+02 15 36 .. 149 169 .. 147 169 .. 0.91 3 ? 5.1 0.1 0.0025 20 15 36 .. 178 198 .. 176 198 .. 0.91 4 ? 1.2 0.1 0.042 3.4e+02 16 33 .. 207 224 .. 206 226 .. 0.88 5 ? 2.3 0.1 0.02 1.6e+02 15 36 .. 235 255 .. 233 255 .. 0.88 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.048 HTH_Mga 18 eksltldelakeLglselt 36 ++ l l++++++L+++++t T316863_1 105 RPKLMLTHIKTQLRTTSKT 123 778899***********97 PP == domain 2 score: 1.6 bits; conditional E-value: 0.032 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++ +L+++++t T316863_1 149 TQ-RPKLTLTHIKIRLHTTSKT 169 66.999**************97 PP == domain 3 score: 5.1 bits; conditional E-value: 0.0025 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++++L+++++t T316863_1 178 TQ-RPKLTLTHIKTQLRTTSKT 198 66.999**************98 PP == domain 4 score: 1.2 bits; conditional E-value: 0.042 HTH_Mga 16 eneksltldelakeLgls 33 +++ ltl++++++L++s T316863_1 207 AHSPKLTLTHIKTQLRTS 224 57899**********998 PP == domain 5 score: 2.3 bits; conditional E-value: 0.02 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++++L++ ++t T316863_1 235 TQ-RPKLTLTHIKTQLHTASKT 255 66.999***********98886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1242 (0.0761683); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 4402.50 // Query: T316863_2 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1042 (0.0639029); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 4661.47 // Query: T316863_3 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2482 (0.152214); expected 326.1 (0.02) Passed bias filter: 336 (0.0206059); expected 326.1 (0.02) Passed Vit filter: 119 (0.00729793); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.57 # Mc/sec: 4093.95 // Query: T001572_1 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.49 # Mc/sec: 12400.82 // Query: T001572_2 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11685.39 // Query: T001572_3 [L=2124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.53 # Mc/sec: 11464.91 // Query: T064201_1 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3567.62 // Query: T064201_2 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 3369.42 // Query: T064201_3 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 2842.95 // Query: T280778_1 [L=1246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.59 # Mc/sec: 6041.69 // Query: T280778_2 [L=1246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-19 69.8 2.6 4.4e-19 69.0 2.6 1.4 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.0 2.6 2.7e-23 4.4e-19 33 201 .] 724 889 .. 719 889 .. 0.89 Alignments for each domain: == domain 1 score: 69.0 bits; conditional E-value: 2.7e-23 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqektlqeldkld 131 id+kl +++n l + v+ +G+ ++sl+++l+++C n C+T+ +yn+s +We vk hl+g + ++sld+skl+++i ++++++ l+ ++ ld T280778_2 724 IDQKLANQINDLRQTVIWMGDRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKRHLQGS--EDNLSLDVSKLKEQIFESSQAHLTALPSAEVLD 821 89*************************************************99**********95..789****************************** PP HHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX.......XXXXXX CS GP41 132 klaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraevqllllkkkkg 201 ++ l+n ++ +Wv+ + ii+ + + ++ +l + + + l + +q +a + + l+++kg T280778_2 822 SIFEGLFNLNPI-QWVNS-LGGSTIINFVLCIICAIGLLFMCKIGKNILQSNCDQCQAMIAMVHLNQRKG 889 ***9***97776.9**94.556778887777777777777777777778888899998888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 571 (0.0350178); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.62 # Mc/sec: 5749.35 // Query: T280778_3 [L=1246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-38 131.6 0.1 3.2e-38 131.0 0.1 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.0 0.1 2e-42 3.2e-38 1 168 [. 259 423 .. 259 424 .. 0.93 Alignments for each domain: == domain 1 score: 131.0 bits; conditional E-value: 2e-42 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvny.lq 96 a+twmd pievyvnds+w+pg +ddrcpa eeg ni++g+rypp+clg + gcl +q w+ +p + + h+vsg+sl+p ++ + T280778_3 259 AMTWMDAPIEVYVNDSIWMPGSVDDRCPALSSEEGTPFNITLGFRYPPLCLGLTNGCLSLDIQTWVDTLPSGHSVPPL-GHLVSGLSLKPLRQIkIG 354 68********************************************************************98877766.59*********6555156 PP HERV-K_env_2 97 dfsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ + +p g +cp + s nt+ l+w++cv+ +l n + ti+ wa + ++ +cs + c T280778_3 355 IADYIHTSQNKPLGPACPLNF---SSNTDKLIWKDCVSTERTVLFNFSLYTIVGWASKSHITNDCSQGHRDC 423 66899999**********876...88****************************************877777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 5843.60 // Query: T276795_1 [L=1596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.72 # Mc/sec: 6341.51 // Query: T276795_2 [L=1595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 7129.72 // Query: T276795_3 [L=1595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7867.28 // Query: T289063_1 [L=236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.56 # Mc/sec: 1184.48 // Query: T289063_2 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 10.3 2.1 1.7 7.2 0.0 2.9 4 RHSP Retrotransposon hot spot protein Domain annotation for each model (and alignments): >> RHSP Retrotransposon hot spot protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.1 1.6e+03 61 69 .. 29 37 .. 26 41 .. 0.86 2 ? 7.2 0.0 0.0001 1.7 48 71 .. 54 77 .. 48 100 .. 0.78 3 ? 1.4 0.0 0.0059 97 50 70 .. 106 126 .. 90 130 .. 0.83 4 ? -2.6 0.1 0.098 1.6e+03 53 70 .. 159 177 .. 155 180 .. 0.68 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.1 RHSP 61 avltsqkgW 69 a+ltsq+gW T289063_2 29 ALLTSQMGW 37 689****** PP == domain 2 score: 7.2 bits; conditional E-value: 0.0001 RHSP 48 lvePlPrrgnleiavltsqkgWPy 71 + PlPrrg a+ltsq g P T289063_2 54 RCSPLPRRGGWAEALLTSQTGQPG 77 699*****************9994 PP == domain 3 score: 1.4 bits; conditional E-value: 0.0059 RHSP 50 ePlPrrgnleiavltsqkgWP 70 lPrrg a+ltsq g P T289063_2 106 SSLPRRGGWAEALLTSQTGRP 126 459***************988 PP == domain 4 score: -2.6 bits; conditional E-value: 0.098 RHSP 53 Prrgnlei.avltsqkgWP 70 Pr g + a+ tsq gWP T289063_2 159 PRWGGGRAeALSTSQTGWP 177 5655555414569*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1179.46 // Query: T289063_3 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.67 # Mc/sec: 1003.43 // Query: T040501_1 [L=1451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-22 80.2 0.1 2.2e-22 79.5 0.1 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 6.1e-07 29.3 0.0 8.9e-07 28.8 0.0 1.2 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 0.1 2.7e-26 2.2e-22 1 88 [. 371 457 .. 371 469 .. 0.95 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 2.7e-26 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmsl 88 +vtw+d p+evy nds w+pg +ddr p++p++eg ++nis+g+++ clg+a cl p+ q wl vp is hm+s +s+ T040501_1 371 PVTWLDPPVEVYTNDSFWIPGSTDDRGPSHPQKEGTIMNISLGFEHLTTCLGKANRCLPPSHQSWLAIVPE-GNISVAQLHMLSDLSI 457 69********************************************************************7.57999999***99987 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 0.0 1.1e-10 8.9e-07 6 64 .. 728 786 .. 723 788 .. 0.96 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 1.1e-10 XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHH CS GP41 6 laqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlkl 64 ++++vq+a vn+ +kn + + Q +i +kl +++n l + ++ lG++v slk +++l T040501_1 728 FTNTVQTADYVNNWQKNSTLLWNSQTNIHQKLTNQINDLRQTIVWLGDHVVSLKYRMQL 786 789******************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.64 # Mc/sec: 6486.04 // Query: T040501_2 [L=1451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-09 37.0 0.0 5e-09 36.1 0.0 1.4 1 GP41 Retroviral envelope protein 7.5e-06 25.7 0.1 1.2e-05 25.0 0.1 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 0.0 6.2e-13 5e-09 73 184 .. 795 902 .. 791 920 .. 0.80 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 6.2e-13 HHCXXXXXXX...XX..HHHHHHHHHHXH.HHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHH CS GP41 73 iCvTkvpynase.sWervkkhlegiWnnt.evsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivl 170 C+T+ yn++e +Wervk hl++ +t ++sld++kl+++i ++++++ + + l++ a la + +W++ l+ ++i ++++ ++ +++l T040501_2 795 FCITPHLYNETEhEWERVKRHLKD---HTgNLSLDIAKLKEHIFQASQAHLTLMTGTKVLEGAADGLAAIHPY-KWIK--TLGDFVISMMIVPLICIVCL 888 6*********************97...4449*********************************888776666.8999..6999**************** PP HHXXXXX....... CS GP41 171 lllPvlfkslaksl 184 +++ + + +++ T040501_2 889 CVVCRCGSRILREV 902 *9843333333333 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.1 1.5e-09 1.2e-05 121 162 .. 483 524 .. 478 529 .. 0.88 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 1.5e-09 HERV-K_env_2 121 skntevlvweecvansavilqnnefgtiidwaprgqfyhncs 162 k+ +++ we+c+a a +l n+ +g idw+p+g f + s T040501_2 483 QKKMKIFTWEDCIAGQAKVLCNDSYGVTIDWSPKGAFIRLTS 524 688899******************************987655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 6016.04 // Query: T040501_3 [L=1450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.003 17.5 0.1 0.0067 16.3 0.1 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.1 4.1e-07 0.0067 23 47 .. 297 321 .. 278 325 .. 0.82 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 4.1e-07 HERV-K_REC 23 stkkaepptwaqlkkltqlatkyle 47 +a+pp w q+kkltq+a l+ T040501_3 297 NIHRAQPPMWGQIKKLTQMAEENLK 321 4579****************87775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 6100.30 // Query: T118249_1 [L=2986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.80 # Mc/sec: 10678.05 // Query: T118249_2 [L=2985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.34s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 12745.64 // Query: T118249_3 [L=2985] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2985 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.27s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 15249.25 // Query: T196637_1 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2239.15 // Query: T196637_2 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-09 37.8 11.3 2.7e-09 37.1 11.3 1.3 1 MARVEL Membrane-associating domain Domain annotation for each model (and alignments): >> MARVEL Membrane-associating domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 11.3 1.7e-13 2.7e-09 15 143 .. 230 342 .. 228 343 .. 0.93 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.7e-13 MARVEL 15 vfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllllylfknsaftsilwplidlivdalaallwlvafialaaglrdiscafesnqys 114 +f+ +++ ++a++ ++ +++++ v+ +sfl++l++ll ylf + ++ +w+++d ++++ + +l+++a+++ ++++ +++ T196637_2 230 IFGFLVWTMVAATH-------IVYPLLQGWVMYVSLTSFLISLMFLLSYLFG-FYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIV--------SEK 313 68889999999888.......7899*************************98.4555899*****************************........889 PP MARVEL 115 asltvrcgqaqaavafgflavllfaasav 143 + + + + aa++f+f+a+ll++++a+ T196637_2 314 LLDPRIYYINSAASFFAFIATLLYILHAF 342 99***********************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 251 (0.0153931); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 1843.65 // Query: T196637_3 [L=406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 2037.71 // Query: T376464_1 [L=468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 2125.19 // Query: T376464_2 [L=467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.64 # Mc/sec: 2087.51 // Query: T376464_3 [L=467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (467 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.66 # Mc/sec: 2024.25 // Query: T207395_1 [L=2705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.63 # Mc/sec: 12283.41 // Query: T207395_2 [L=2705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.70 # Mc/sec: 11055.06 // Query: T207395_3 [L=2704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2704 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 620 (0.0380228); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 10453.63 // Query: T110892_1 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.65 # Mc/sec: 1188.34 // Query: T110892_2 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.69 # Mc/sec: 1119.46 // Query: T110892_3 [L=269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-08 35.8 0.3 1.8e-08 35.0 0.3 1.3 1 Lbh Cardiac transcription factor regulator, Development Domain annotation for each model (and alignments): >> Lbh Cardiac transcription factor regulator, Developmental protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.0 0.3 1.1e-12 1.8e-08 55 80 .. 118 143 .. 111 149 .. 0.93 Alignments for each domain: == domain 1 score: 35.0 bits; conditional E-value: 1.1e-12 Lbh 55 trLPSiVVEasevgeeesgelrwPhe 80 rLPSiVVE+se +esgelrwP e T110892_3 118 QRLPSIVVEPSEADPVESGELRWPLE 143 59**********************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.60 # Mc/sec: 1282.61 // Query: T022819_1 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 19.0 0.3 1.9 9.0 0.2 2.5 2 Ig_3 Immunoglobulin domain 0.0063 16.5 0.0 0.016 15.2 0.0 1.6 1 V-set Immunoglobulin V-set domain ------ inclusion threshold ------ 0.11 12.4 0.0 1.2 9.1 0.0 2.2 2 I-set Immunoglobulin I-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.5 0.0 0.001 5.7 28 73 .. 78 115 .. 63 120 .. 0.75 2 ! 9.0 0.2 0.00035 1.9 18 42 .. 157 184 .. 142 218 .. 0.72 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.001 ES--EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEE CS Ig_3 28 nppptitWykngkklssnstsssissegssssLtisnvtksdsGtY 73 ++p tW+k + k ++ + ++ s ssL+i+n+ ++dsG+Y T022819_1 78 ADSP--TWLKLQDKFKQ---R---VHVPSMSSLRIENLAPEDSGQY 115 4455..68887774222...3...468899**************** PP == domain 2 score: 9.0 bits; conditional E-value: 0.00035 -EEE----EEES--.EEEEEE..-.... CS Ig_3 18 svtLtCeaegnppp.titWykngkk..l 42 +vtL+C+a g + ++tW +g l T022819_1 157 NVTLECRAPGATEDlNVTWESKGLLreL 184 8*******9999999******9996532 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 3e-06 0.016 28 101 .. 55 129 .. 28 135 .. 0.76 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 3e-06 CSEEEEEEEETTSCEEEEEEEETT.TEEEEES.TTTEEEEEETTTTEEEEEESSESGGG-EEEEEEE.ESSSEEEEE CS V-set 28 slsiyWyrqppgkepeelilyysn.sskegkk.kgrfslrgdpsrsdfsLtiqnlqlsDsGtYfCav.vssgegvfg 101 ++ W ++ +++l+ ++s +s++ k +++f+ r s sL+i+nl ++DsG Yf ++ +++geg f+ T022819_1 55 LEEVLWALGTLT-DHTQLLRVRSGaDSPTWLKlQDKFKQRV-HVPSMSSLRIENLAPEDSGQYFANItSTKGEGIFQ 129 567889998888.6667777776677777777788888888.78889*****************9986666666554 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.0 0.00023 1.2 37 80 .. 86 124 .. 75 132 .. 0.74 2 ? 0.0 0.0 0.15 8.1e+02 18 38 .. 158 179 .. 156 202 .. 0.88 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00023 TTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSE CS I-set 37 dgselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsag 80 + + k+ rv+v + ++L+I+n ++D+G+Y ++t g T022819_1 86 LQDKFKQ--RVHVP---SMSSLRIENLAPEDSGQYFANITSTKG 124 4444442..44443...456***************999887766 PP == domain 2 score: 0.0 bits; conditional E-value: 0.15 EEEEEEEECS.SS-EEEEEETT CS I-set 18 velectveGe.pepsvsWakdg 38 v+lec++ G ++++v+W ++g T022819_1 158 VTLECRAPGAtEDLNVTWESKG 179 89******98799*****9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.72 # Mc/sec: 9869.86 // Query: T022819_2 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.28s 00:00:01.31 Elapsed: 00:00:00.89 # Mc/sec: 7984.61 // Query: T022819_3 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.57 # Mc/sec: 12247.31 // Query: T155879_1 [L=4345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.41s 00:00:02.02 Elapsed: 00:00:00.75 # Mc/sec: 16573.74 // Query: T155879_2 [L=4344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.36s 00:00:01.75 Elapsed: 00:00:00.81 # Mc/sec: 15342.53 // Query: T155879_3 [L=4344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.37s 00:00:01.99 Elapsed: 00:00:00.80 # Mc/sec: 15534.31 // Query: T126173_1 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 6583.88 // Query: T126173_2 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 6579.91 // Query: T126173_3 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6672.58 // Query: T016081_1 [L=2450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00021 20.7 0.1 0.00041 19.8 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.1 2.5e-08 0.00041 1 19 [] 2285 2303 .. 2285 2303 .. 0.94 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.5e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+ +WM+LE+ ILS+ sQ T016081_1 2285 SFVRTWMKLETVILSKLSQ 2303 6888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.28s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 10461.24 // Query: T016081_2 [L=2450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 10158.02 // Query: T016081_3 [L=2450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-47 159.5 2.8 1.1e-46 159.0 2.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.0 2.8 6.9e-51 1.1e-46 1 222 [] 1561 1817 .. 1561 1817 .. 0.95 Alignments for each domain: == domain 1 score: 159.0 bits; conditional E-value: 6.9e-51 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk+ a+r++ +++kl++++q+ f pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T016081_3 1561 IPKPGrdttkKENFRPISLMNIDAKILNKIPANRIQRHIKKLIHHDQVSFIPGIQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQLFML 1658 899999999999*******************************************99999***99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + ++i++++ ++++++ +ng++ e ++ k+g++qG++lS llfn++++ l r +r++ ++v+l+++aDD++++ ++ T016081_3 1659 KTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSSLLFNIVLEVLARAIRQQKeikgiqlgkEEVKLSLFADDMIVYLENpI 1756 ********************************99**************************************************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + q+ll+ ++++ k sg+kin + ++++l ++ s+++kyLG++l T016081_3 1757 VSTQNLLKLISNFSKVSGYKINVQTSQAFLHtnnrqtesqimRElpftiASKRIKYLGIQL 1817 77***************************98999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.82 # Mc/sec: 8547.60 // Query: T351465_1 [L=3250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-22 80.2 1.3 2.2e-22 79.5 1.3 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 3.2e-10 40.1 0.0 5.4e-10 39.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.3e-07 31.3 1.1 2.9e-07 30.2 1.1 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 1.3 4.1e-26 2.2e-22 1 121 [. 3118 3247 .. 3118 3250 .] 0.96 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 4.1e-26 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK g ++++Rp+sl+++d k+lnkl+a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T351465_1 3118 IPKSGrdttkKENFRPVSLMNIDAKILNKLLANRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 3215 788888888889***************************************************99999999999999********************* PP GGGG-EEET....................... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvnge 121 ++l++++++ + ++i +++ ++++++ +ng+ T351465_1 3216 KTLNKLGIDGTYFKIITAIYDKPTANIILNGQ 3247 ***************************99997 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.0 9.9e-14 5.4e-10 1 113 [] 2612 2831 .. 2612 2831 .. 0.85 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 9.9e-14 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T351465_1 2612 LTLNVNG----LNAPIKKHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKpskikrdkeghyimv 2701 699****....7888999*******************99988877766668866677888899999*****99999777788999999**9999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T351465_1 2702 kgsiqqegliilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrsmrqkvnkdtqvlnsalhqadlidiyrtlhpksteytff 2795 9999999*9999999999999999999999999999999999******9999999999999999999999999999999999999998888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T351465_1 2796 saphntysKIDHILGSKALLSKCKRTEIITNYlSDH 2831 8888888888*****985544444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 1.1 5.3e-11 2.9e-07 2 118 .. 2711 2834 .. 2710 2835 .. 0.81 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 5.3e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + + +++ ++ + L + l++ +l + ++k++ tf s + T351465_1 2711 IILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSMRQKvNKDTQVLNSALHQADLIDIyrtLHPKSTeYTFFSAPHn 2800 58899**9999.777777777788788876.89*************998877789999***********98666664444444777554444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH+ i T351465_1 2801 tYSKIDHILGSKALLSKckRTEIITNYLSDHSTI 2834 58***************98666779******987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 971 (0.0595486); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.58u 0.35s 00:00:01.93 Elapsed: 00:00:00.74 # Mc/sec: 12564.46 // Query: T351465_2 [L=3250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-151 503.0 20.2 4.9e-151 502.6 20.2 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.096 12.8 3.5 0.24 11.6 3.5 1.6 1 KLRAQ Predicted coiled-coil domain-containing prote 0.18 11.9 5.7 0.31 11.1 5.7 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 4.3 6.9 8.5 11 5.6 8.5 1.6 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 502.6 20.2 1.2e-154 4.9e-151 1 368 [] 2242 2577 .. 2242 2577 .. 0.98 Alignments for each domain: == domain 1 score: 502.6 bits; conditional E-value: 1.2e-154 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e++++++y+el e+ ++k+ke+e ++k++ee ntek+lk T351465_2 2242 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRRSNYSELWEDSQTKGKEVEnFEKNLEEcitritNTEKCLK 2329 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkileq 178 el+elk+k++el++e++ sl+sr d+leervsa+ede++e+ + e+k+rekr+k++eq T351465_2 2330 ------------------ELMELKAKARELHEECR------------------SLRSRHDQLEERVSAMEDEVNEM-K*EGKFREKRIKRNEQ 2385 ..................9****************..................**********************9.5559************ PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnlrliGv+es+ e+ +klen+l++i +enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rek T351465_2 2386 SLQEIWDYVKRPNLRLIGVPESDGENETKLENTLQDINQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREK 2478 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 GrvtlkGkPirl ad+saetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T351465_2 2479 GRVTLKGKPIRLPADFSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 2571 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 l++++ T351465_2 2572 LLQNHA 2577 ****96 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 3.5 5.8e-05 0.24 30 79 .. 2326 2382 .. 2312 2394 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 5.8e-05 KLRAQ 30 elkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsk 79 + +el e +++ r ++E sL r +qLe rv+++ +e++e + K++ + T351465_2 2326 KCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNEMK*egkfreKRIKR 2382 4445566666778999**************************988875333222222 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 5.7 7.7e-05 0.31 6 99 .. 2275 2368 .. 2271 2370 .. 0.96 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 7.7e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ ++ ++ ++ ++ lee+ ++ + k +++++ k++a el +e ++l + ++le++++++e+e+++ T351465_2 2275 WMENDFDELREEGFRRSNYSELWEDSQTKGKEVENFEKNLEECITRITNTEKCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNE 2368 7889***************************************************************************************987 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 8.5 0.0027 11 121 185 .. 2295 2364 .. 2254 2397 .. 0.52 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0027 IncA 121 lq.eelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqr 185 ++ e+ +++++++e++e++++e +i++++ el +lk + +el +e+++l++++++l+++++ ++ T351465_2 2295 ELwEDSQTKGKEVENFEKNLEECITRITNTEkclkELMELKAKARELHEECRSLRSRHDQLEERVSAMED 2364 3334444444444444444444444444444444444444444444444444444444444443333322 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 756 (0.0463633); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.87 # Mc/sec: 10687.01 // Query: T351465_3 [L=3249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.69 # Mc/sec: 13470.78 // Query: T183265_1 [L=8780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.49u 0.41s 00:00:02.90 Elapsed: 00:00:00.87 # Mc/sec: 28871.36 // Query: T183265_2 [L=8780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.39u 0.41s 00:00:02.80 Elapsed: 00:00:00.72 # Mc/sec: 34886.23 // Query: T183265_3 [L=8780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.47u 0.41s 00:00:02.88 Elapsed: 00:00:00.82 # Mc/sec: 30631.81 // Query: T212066_1 [L=8298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.57u 0.46s 00:00:03.03 Elapsed: 00:00:00.95 # Mc/sec: 24988.60 // Query: T212066_2 [L=8297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 12.9 16.3 0.2 11.3 16.3 1.8 1 Collagen Collagen triple helix repeat (20 copies) Domain annotation for each model (and alignments): >> Collagen Collagen triple helix repeat (20 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 16.3 1.2e-05 0.2 7 47 .. 1183 1223 .. 1180 1227 .. 0.38 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.2e-05 XXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXX CS Collagen 7 GepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGa 47 G+pG G pG+rG++G G +G++Gp+G G pG++G++ T212066_2 1183 GQPGLGGWPGHRGPHGIGGWPGHRGPHGIGGWPGHRGPQSR 1223 33333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 516 (0.0316448); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.65u 0.45s 00:00:03.10 Elapsed: 00:00:01.03 # Mc/sec: 23044.96 // Query: T212066_3 [L=8297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.41s 00:00:02.42 Elapsed: 00:00:00.77 # Mc/sec: 30826.37 // Query: T138029_1 [L=4977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.56 # Mc/sec: 24979.56 // Query: T138029_2 [L=4976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.79 10.0 4.1 1.3 9.3 4.1 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 4.1 8e-05 1.3 24 42 .. 1740 1758 .. 1738 1777 .. 0.66 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 8e-05 CENP-B_dimeris 24 eedeededeeddedddevp 42 ++d++d+d++dd+d+d v T138029_2 1740 DDDDDDDDDDDDDDGDRVC 1758 5677777777777888774 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.66 # Mc/sec: 21568.92 // Query: T138029_3 [L=4976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.57 # Mc/sec: 24543.95 // Query: T362178_1 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 9229.04 // Query: T362178_2 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 9048.08 // Query: T362178_3 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 9042.47 // Query: T249665_1 [L=3401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 555 (0.0340366); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 17069.62 // Query: T249665_2 [L=3401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.55 # Mc/sec: 17690.33 // Query: T249665_3 [L=3401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 659 (0.0404146); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.60 # Mc/sec: 16216.14 // Query: T174781_1 [L=1653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9272.45 // Query: T174781_2 [L=1652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 9266.85 // Query: T174781_3 [L=1652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 9452.18 // Query: T145257_1 [L=941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 5608.42 // Query: T145257_2 [L=941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 5384.08 // Query: T145257_3 [L=941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 5278.51 // Query: T316433_1 [L=2746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 14283.34 // Query: T316433_2 [L=2745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.53 # Mc/sec: 14816.94 // Query: T316433_3 [L=2745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 14278.14 // Query: T111698_1 [L=5558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.59 # Mc/sec: 26949.99 // Query: T111698_2 [L=5558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.60 # Mc/sec: 26500.82 // Query: T111698_3 [L=5557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5557 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.63 # Mc/sec: 25234.34 // Query: T215317_1 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 10579.57 // Query: T215317_2 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 10787.01 // Query: T215317_3 [L=1923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-08 34.7 0.1 2.3e-08 34.1 0.1 1.3 1 Cystatin Cystatin domain Domain annotation for each model (and alignments): >> Cystatin Cystatin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.1 1.4e-12 2.3e-08 45 92 .] 462 512 .. 462 512 .. 0.97 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 1.4e-12 ESSSEEEEEEEEEEECEEETECEEEEEEEECS...TTSEEEEEEEEEEETT CS Cystatin 45 vVaGtnyfikvevgetdcskskklledcelkd...ekqegecsaqvykkvw 92 vVa +nyf++ve+g+ +c ks+ +l++c+++ ++++++cs+q+ +++w T215317_3 462 VVAAMNYFFDVEMGQITCAKSQPNLDNCSFHHqrkLQEKQFCSFQICEVPW 512 8******************************999999*********99998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 10787.01 // Query: T227322_1 [L=5043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.57 # Mc/sec: 24874.42 // Query: T227322_2 [L=5043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.62 # Mc/sec: 23269.62 // Query: T227322_3 [L=5043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.62 # Mc/sec: 23269.62 // Query: T228091_1 [L=3087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 15226.52 // Query: T228091_2 [L=3087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.61 # Mc/sec: 14477.68 // Query: T228091_3 [L=3087] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-08 32.6 0.4 7.2e-08 31.7 0.4 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.4 4.4e-12 7.2e-08 1 19 [] 2983 3001 .. 2983 3001 .. 0.98 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 4.4e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE IILS+ +Q T228091_3 2983 SFAGTWMKLEAIILSKLTQ 3001 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3087 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.61 # Mc/sec: 14477.68 // Query: T090331_1 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 11689.25 // Query: T090331_2 [L=2329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-45 152.9 26.6 5e-38 129.0 13.6 2.8 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 5.1 1.6e-14 2.6e-10 15 56 .. 644 685 .. 641 685 .. 0.95 2 ! 129.0 13.6 3e-42 5e-38 1 89 [] 672 759 .. 672 759 .. 0.98 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 1.6e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090331_2 644 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 685 567*************************************97 PP == domain 2 score: 129.0 bits; conditional E-value: 3e-42 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090331_2 672 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 759 69******************************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.57 # Mc/sec: 11487.71 // Query: T090331_3 [L=2328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 11684.23 // Query: T183428_1 [L=5057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 23334.22 // Query: T183428_2 [L=5057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.63 # Mc/sec: 22963.84 // Query: T183428_3 [L=5057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.62 # Mc/sec: 23334.22 // Query: T256082_1 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3945.79 // Query: T256082_2 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 3867.42 // Query: T256082_3 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 3729.30 // Query: T369072_1 [L=1694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 7126.83 // Query: T369072_2 [L=1694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 7572.26 // Query: T369072_3 [L=1694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 7233.20 // Query: T234154_1 [L=3574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:00.75 # Mc/sec: 13632.81 // Query: T234154_2 [L=3574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.68 # Mc/sec: 15036.19 // Query: T234154_3 [L=3574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.93 # Mc/sec: 10994.20 // Query: T078933_1 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-40 139.2 14.0 2.5e-40 138.8 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.62 8.8 9.9 1.1 7.9 9.9 1.3 1 Spc7 Spc7 kinetochore protein 0.64 8.4 11.7 0.85 8.0 11.7 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 0.64 10.0 10.1 0.86 9.6 2.9 2.2 2 BRE1 BRE1 E3 ubiquitin ligase 4.5 7.3 12.9 7.1 6.6 12.9 1.2 1 Tropomyosin_1 Tropomyosin like 7.3 6.8 10.5 11 6.2 10.5 1.2 1 Muted Organelle biogenesis, Muted-like protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.8 14.0 9.3e-44 2.5e-40 126 312 .] 62 249 .. 59 249 .. 0.96 Alignments for each domain: == domain 1 score: 138.8 bits; conditional E-value: 9.3e-44 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078933_1 62 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 159 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078933_1 160 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 249 ***************************************************************************************975 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 9.9 0.0004 1.1 198 288 .. 131 221 .. 122 244 .. 0.82 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0004 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkivs 288 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ + T078933_1 131 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQ 221 5677889999999999999999999999999999999999999999999999999999999888888888888888888877776666544 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 11.7 0.00031 0.85 412 502 .. 142 228 .. 131 241 .. 0.86 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00031 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078933_1 142 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 228 44444444....46999*******************************9999999**********************************85 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 2.3 0.024 66 7 52 .. 136 181 .. 131 192 .. 0.81 2 ? 9.6 2.9 0.00032 0.86 14 69 .. 189 244 .. 178 247 .. 0.87 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.024 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamr 52 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078933_1 136 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEA 181 5677778899999999999999999999999999999998777665 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00032 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078933_1 189 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 244 445667788889**************************************999986 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 12.9 0.0026 7.1 8 102 .. 125 221 .. 122 228 .. 0.86 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0026 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078933_1 125 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 220 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078933_1 221 Q 221 5 PP >> Muted Organelle biogenesis, Muted-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 10.5 0.0041 11 56 141 .. 137 224 .. 130 229 .. 0.82 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0041 Muted 56 lpkcleslkenLsevnkkleaalekverllqkeleeeqekserlqekeekrkkeweeFlkelqkkkeevDeefeekveelk...ekYse 141 + ++++ enL ++++l++++ +++rl + e+++++ +l+++ +++++ e l++ + k +e+++ +++ +++ ++Y+e T078933_1 137 VKATVTQQGENLRRTKDELNELNCMIQRLTAE-VENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMAcmlKQYQE 224 4444555689********************99.77777799******************************999987765422256665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 805 (0.0493683); expected 326.1 (0.02) Passed bias filter: 464 (0.0284558); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 6003.34 // Query: T078933_2 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 6097.14 // Query: T078933_3 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 6097.14 // Query: T012470_1 [L=1309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-07 28.4 0.2 1.6e-06 27.5 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.2 9.5e-11 1.6e-06 1 19 [] 893 911 .. 893 911 .. 0.98 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 9.5e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012470_1 893 PFAGSWMKLEAIILSKLSQ 911 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 5851.29 // Query: T012470_2 [L=1309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-07 28.7 3.0 2e-06 27.4 0.0 2.4 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.2 0.012 2e+02 8 61 .. 173 235 .. 168 244 .. 0.77 2 ! 27.4 0.0 1.2e-10 2e-06 158 222 .] 339 425 .. 314 425 .. 0.82 3 ? -3.5 0.0 0.34 5.6e+03 10 27 .. 1069 1086 .. 1068 1087 .. 0.89 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.012 -EEE......-THHHHCTB-..-.........-------HHHH.................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellka 61 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k+ T012470_2 173 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINKH 235 7799999999988888888555********************999988887555444444444 PP == domain 2 score: 27.4 bits; conditional E-value: 1.2e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012470_2 339 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 425 256666789***************5555***************************99999988877762256678*********986 PP == domain 3 score: -3.5 bits; conditional E-value: 0.34 EE......-THHHHCTB- CS RVT_1 10 Rpisllsvdykalnklia 27 R++ ll++ +++lnkl++ T012470_2 1069 RTLTLLCTSFRILNKLLH 1086 89999**********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 5851.29 // Query: T012470_3 [L=1309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-07 29.8 0.1 5.9e-07 29.1 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.1 3.6e-11 5.9e-07 31 90 .. 205 268 .. 193 270 .. 0.85 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 3.6e-11 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012470_3 205 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 268 3577889***********888888899989999999999999*****************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 6808.78 // Query: T183032_1 [L=6834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.37s 00:00:02.38 Elapsed: 00:00:00.83 # Mc/sec: 23555.32 // Query: T183032_2 [L=6834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.38s 00:00:02.42 Elapsed: 00:00:00.98 # Mc/sec: 19949.91 // Query: T183032_3 [L=6834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.38s 00:00:02.34 Elapsed: 00:00:00.89 # Mc/sec: 21967.32 // Query: T040402_1 [L=96] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (96 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.61 # Mc/sec: 450.23 // Query: T040402_2 [L=96] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (96 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.60 # Mc/sec: 457.73 // Query: T040402_3 [L=96] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (96 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.61 # Mc/sec: 450.23 // Query: T051424_1 [L=5523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.38s 00:00:02.18 Elapsed: 00:00:00.81 # Mc/sec: 19506.62 // Query: T051424_2 [L=5523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.77 # Mc/sec: 20519.95 // Query: T051424_3 [L=5522] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5522 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.34s 00:00:02.02 Elapsed: 00:00:00.72 # Mc/sec: 21940.98 // Query: T253908_1 [L=2668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1788 (0.109653); expected 326.1 (0.02) Passed bias filter: 492 (0.0301729); expected 326.1 (0.02) Passed Vit filter: 284 (0.0174169); expected 16.3 (0.001) Passed Fwd filter: 80 (0.00490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.18u 0.49s 00:00:03.67 Elapsed: 00:00:01.12 # Mc/sec: 6814.91 // Query: T253908_2 [L=2668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00077 18.9 1.3 0.0017 17.8 1.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 1.3 1e-07 0.0017 1 16 [. 1713 1728 .. 1713 1730 .. 0.89 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1e-07 DUF1725 1 kFagKWMELEnIILSE 16 +F+ +WM+LE+IILS+ T253908_2 1713 SFVETWMKLETIILSK 1728 6778***********7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1304 (0.0799706); expected 326.1 (0.02) Passed bias filter: 323 (0.0198087); expected 326.1 (0.02) Passed Vit filter: 154 (0.00944438); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.25u 0.40s 00:00:02.65 Elapsed: 00:00:00.85 # Mc/sec: 8979.64 // Query: T253908_3 [L=2667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.7 7.9 26.8 0.12 12.7 7.5 2.6 2 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 7.5 7.5e-06 0.12 18 74 .. 193 268 .. 106 278 .. 0.57 2 ? 0.3 11.3 0.05 8.2e+02 21 73 .. 498 550 .. 443 564 .. 0.54 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 7.5e-06 RNA_pol_Rpc4 18 q...................avsaaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkska 74 + +++++++ k+e+++ +e++k++e++k+e+++++ ++e k+++k++ kk+ kk+ + T253908_3 193 Ttapr*nqstkrerkerekrKKEKKDERKKEKEERGRERKKEKERKKEEERKKERKKERKKERKKERKKERKKKGR 268 0555555555333333322223333333333333333333333333333333333333333333333333333334 PP == domain 2 score: 0.3 bits; conditional E-value: 0.05 RNA_pol_Rpc4 21 saaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkksk 73 + +++ k+++++++++k+++ +e+k+++++g+e ++k+ k ke k k+ k +k T253908_3 498 ERTKEGKERKGKERKGKERKGKERKGKERKGKERKGKERKGKERKGKERKGEK 550 22222223333333333333333333333333333333333333222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2667 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1767 (0.108365); expected 326.1 (0.02) Passed bias filter: 507 (0.0310928); expected 326.1 (0.02) Passed Vit filter: 285 (0.0174782); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.01u 0.49s 00:00:03.50 Elapsed: 00:00:00.91 # Mc/sec: 8384.43 // Query: T136275_1 [L=933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0039 17.1 0.0 0.0086 16.0 0.0 1.5 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 5.3e-07 0.0086 27 65 .. 170 210 .. 166 211 .. 0.92 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 5.3e-07 HHHHHHHHH..HHSSSCT-TT-S--CHHHHHHHHHTSXXXX CS HTH_Tnp_Tc5 27 irekAqela..slaadpkepdfkaSkgWldrFkkRhgikrr 65 +r kA+ ++ ++ ++ + +f+aS g l rFk+R+g+k++ T136275_1 170 VRLKAKDICghVTQSQRNAKPFSASAGRLARFKRRYGVKNV 210 789********777999*********************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 4305.09 // Query: T136275_2 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 3979.54 // Query: T136275_3 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-24 84.1 0.6 2.1e-19 69.7 0.0 2.3 2 DDE_1 DDE superfamily endonuclease 4.2e-07 29.4 0.9 7.7e-07 28.5 0.9 1.5 1 CENP-B_N CENP-B N-terminal DNA-binding domain 0.002 17.7 0.0 0.0049 16.5 0.0 1.6 1 HTH_23 Homeodomain-like domain 0.0048 16.9 0.0 0.011 15.7 0.0 1.6 1 HTH_28 Helix-turn-helix domain ------ inclusion threshold ------ 0.02 14.5 0.0 0.086 12.5 0.0 2.0 2 DDE_3 DDE superfamily endonuclease 0.025 14.3 0.0 0.048 13.3 0.0 1.4 1 HTH_38 Helix-turn-helix domain 0.16 11.4 0.0 0.3 10.5 0.0 1.4 1 Sigma70_r4 Sigma-70, region 4 Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.1 2.8e-05 0.066 25 71 .. 301 342 .. 280 352 .. 0.83 2 ! 69.7 0.0 8.9e-23 2.1e-19 76 176 .] 470 574 .. 464 574 .. 0.96 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 2.8e-05 DDE_1 25 kgksprafknektkkkldveyksnrkawltssifeeWLekvfdkrve 71 + ++p+a k ++l+v++++n+k w+ +++W+++ f++ e T136275_3 301 RTQNPQALNG-KYVNHLPVYWRWNKKVWM----MSDWFHNCFIPEAE 342 5788888888.999**************9....78899999998776 PP == domain 2 score: 69.7 bits; conditional E-value: 8.9e-23 DDE_1 76 rkvlLllddsrshetvelsecelqniklvflPasstsllqPldqgvvselKarYrrqllkallalqnrlsk.....eqkkltllnalkfikkAwnavske 170 kvlL+ld+++ h +el e++ ni ++f+P++++sl+qPl++g+++++Ka+Y r+l+ ++ ++ ++ ++ +k +t n + + Aw+++ ++ T136275_3 470 FKVLLILDNATIHCCKEL-ENAHANIGVLFMPPNTKSLIQPLNRGIIKAFKAHYTRELYMKACEALRTNKEttmldYWKSVTTCNVIDYVSTAWESIGQA 568 79***************9.99*****************************************99999999999999************************ PP DDE_1 171 tIksaw 176 t +++w T136275_3 569 TTNNCW 574 *****9 PP >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 0.9 3.3e-10 7.7e-07 1 52 [. 68 119 .. 68 120 .. 0.96 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 3.3e-10 SSSSSS--HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHHHHCHHHHCCH CS CENP-B_N 1 rkkRrsLTlreKievIqrleegeSkaelarrfnvpestlsdilknKkkllke 52 ++k+++ l eK++v +l g+S +++ ++nv est++ i+k++k++ ++ T136275_3 68 KRKKTVMCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRS 119 89*********************************************99875 PP >> HTH_23 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 2.1e-06 0.0049 6 40 .. 78 112 .. 76 116 .. 0.92 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 2.1e-06 HTH_23 6 eRarillllaeGlsvreIAreLgvsrrTvyrwlkr 40 e+ r+l l++G+s++++ eL+v+++T++ ++k+ T136275_3 78 EKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKK 112 78899*************************99997 PP >> HTH_28 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 4.7e-06 0.011 1 38 [. 78 115 .. 78 118 .. 0.91 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 4.7e-06 HTH_28 1 qRleiikllaaGhsvreaArelgisrrtvyrWikryee 38 ++ +++ l++G+s++++ +el+++++t++ k+ e T136275_3 78 EKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKE 115 58899999**********************99998655 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 1.8 4.1e+03 117 135 .. 97 115 .. 94 122 .. 0.78 2 ? 12.5 0.0 3.7e-05 0.086 80 115 .. 471 502 .. 458 507 .. 0.85 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 1.8 DDE_3 117 PelNpiEivwsklkrellk 135 +elN+ E ++++k++ ++ T136275_3 97 HELNVNESTIRYIKKKEKE 115 899******9999998666 PP == domain 2 score: 12.5 bits; conditional E-value: 3.7e-05 DDE_3 80 kivlilDnasiHkseslrelveeeadrlellylPpy 115 k+ lilDna+iH +++l+++ + ++ +l++Pp+ T136275_3 471 KVLLILDNATIHCCKELENAHA----NIGVLFMPPN 502 899***************9944....5999999986 PP >> HTH_38 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 2e-05 0.048 7 39 .. 76 108 .. 72 112 .. 0.88 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2e-05 HTH_38 7 leeReeIerllaeGlslreIArrLgrspsTIsR 39 l+e ++ + l+ G+s+++++ +L+++ sTI + T136275_3 76 LTEKVRVLDKLQSGMSYSAVGHELNVNESTIRY 108 678888888899*******************86 PP >> Sigma70_r4 Sigma-70, region 4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.00013 0.3 2 43 .. 63 112 .. 62 112 .. 0.83 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00013 HHHS-HHHHHHHHHHH........TTT--HHHHHHHHTS-HHHHHHHHHH CS Sigma70_r4 2 LasLpererevlelrf........geelTleEIgerlgiSrerVrqiekr 43 L s p r ++v++l +++++ +g +l++ ++++r i+k+ T136275_3 63 LPSVPKRKKTVMCLTEkvrvldklQSGMSYSAVGHELNVNESTIRYIKKK 112 666677777788777777778888889******************99986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 303 (0.0185821); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.79 # Mc/sec: 3375.06 // Query: T132845_1 [L=1752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.73 # Mc/sec: 6865.99 // Query: T132845_2 [L=1752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.67 # Mc/sec: 7480.86 // Query: T132845_3 [L=1751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.8 8.4 16.4 5 7.6 16.4 1.4 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 16.4 0.00031 5 62 95 .. 1036 1066 .. 1027 1069 .. 0.57 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00031 PRP38_assoc 62 rrsrstprdrdrardRdrrrskrsreRdrsrsrd 95 + +r+ +r+r rdRdr ++ r+reR+r+r+r+ T132845_3 1036 KGKRE--NNRERKRDRDRGGE-RERERERERERE 1066 22222..55666666666655.777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.79 # Mc/sec: 6340.90 // Query: T138463_1 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.25s 00:00:01.26 Elapsed: 00:00:00.73 # Mc/sec: 7673.29 // Query: T138463_2 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 7779.87 // Query: T138463_3 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 11.6 0.0 0.23 10.9 0.0 1.2 1 Plant_tran Plant transposon protein Domain annotation for each model (and alignments): >> Plant_tran Plant transposon protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 1.4e-05 0.23 79 149 .. 442 515 .. 387 524 .. 0.76 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 1.4e-05 Plant_tran 79 pgsnndinvldrsplfadilkGeaprv...kyvvnekqynlayyladGiypkwatlvksirlpqlekkklfaqk 149 i l rs++ +++l G+ p+ +v+ + y+ i+p+ t v+++ +p+++ ++l +++ T138463_3 442 QCMHTHIYTLTRSHVHTHVLIGTHPHTftdVLTVYTLTRMHTMYVHTHIHPHTVTHVHTLTHPRTRMHQLSSHH 515 356678999**************998622235677777788899************************997765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.76 # Mc/sec: 7366.64 // Query: T355666_1 [L=1335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 5379.17 // Query: T355666_2 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-18 64.7 0.2 8.7e-18 63.8 0.2 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.8 0.2 5.3e-22 8.7e-18 18 80 .] 251 313 .. 247 313 .. 0.94 Alignments for each domain: == domain 1 score: 63.8 bits; conditional E-value: 5.3e-22 Transposase_1 18 pkkvpkpelhqkkvmltVwWsakgliyyeflppge.titsevYaqqldklrqklqekrpalvnr 80 k ++k++l kkvm+tVwWsa++li+y+f +p tit e+++qq+d+++qklq+++ alvnr T355666_2 251 SKALSKAKLAPKKVMVTVWWSAASLIHYSFPNP-G*TITFEKHSQQIDEMHQKLQCLQLALVNR 313 68899*************************888.68899***********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 6057.69 // Query: T355666_3 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.73 # Mc/sec: 5227.87 // Query: T368594_1 [L=8474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 632 (0.0387587); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.90u 0.53s 00:00:03.43 Elapsed: 00:00:00.90 # Mc/sec: 26936.30 // Query: T368594_2 [L=8473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.43s 00:00:03.26 Elapsed: 00:00:00.99 # Mc/sec: 24484.66 // Query: T368594_3 [L=8473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 657 (0.0402919); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.93u 0.44s 00:00:03.37 Elapsed: 00:00:00.88 # Mc/sec: 27545.24 // Query: T338267_1 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 4713.56 // Query: T338267_2 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 4432.15 // Query: T338267_3 [L=1038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 4639.91 // Query: T005214_1 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 3247.57 // Query: T005214_2 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-19 66.9 0.5 1.6e-18 66.2 0.5 1.4 1 SCAN SCAN domain Domain annotation for each model (and alignments): >> SCAN SCAN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.2 0.5 9.8e-23 1.6e-18 3 70 .. 309 377 .. 308 380 .. 0.97 Alignments for each domain: == domain 1 score: 66.2 bits; conditional E-value: 9.8e-23 SCAN 3 asrqrFrqfryqeaegprealsrL.relcrqWlrpevhtkeqilellvlEQFltilpeelqawvrekkp 70 asrqrFr+f+y++a+gpr++l++L r Wlrp++htkeq +e+lv EQF ++lpeel+a + ++p T005214_2 309 ASRQRFRKFCYEDAAGPRDVLRHL*DLAGRWWLRPDIHTKEQTVEMLVQEQFQAVLPEELRAQAQRCQP 377 79**************************************************************99998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 2735.67 // Query: T005214_3 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 2574.75 // Query: T156477_1 [L=2655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 10404.80 // Query: T156477_2 [L=2654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.51 # Mc/sec: 14887.53 // Query: T156477_3 [L=2654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 13320.43 // Query: T052742_1 [L=2189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 11182.78 // Query: T052742_2 [L=2189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 11182.78 // Query: T052742_3 [L=2189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 11182.78 // Query: T381594_1 [L=3671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.59 # Mc/sec: 17800.18 // Query: T381594_2 [L=3670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.55 # Mc/sec: 19089.54 // Query: T381594_3 [L=3670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 18102.15 // Query: T072288_1 [L=1559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 8415.16 // Query: T072288_2 [L=1559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 8259.32 // Query: T072288_3 [L=1559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 8415.16 // Query: T143307_1 [L=1846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 9601.99 // Query: T143307_2 [L=1845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 9596.78 // Query: T143307_3 [L=1845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9958.93 // Query: T082930_1 [L=3355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.57 # Mc/sec: 16548.42 // Query: T082930_2 [L=3354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 16833.73 // Query: T082930_3 [L=3354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 16833.73 // Query: T138449_1 [L=3128] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3128 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 15428.75 // Query: T138449_2 [L=3127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00012 21.4 0.8 0.37 10.4 0.1 4.9 5 Pentapeptide Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 0.1 2.3e-05 0.37 2 25 .. 1128 1151 .. 1128 1156 .. 0.86 2 ? 1.2 0.0 0.016 2.7e+02 28 39 .. 1212 1223 .. 1203 1233 .. 0.59 3 ? 1.5 0.0 0.014 2.2e+02 3 24 .. 1261 1282 .. 1261 1283 .. 0.77 4 ? 1.7 0.0 0.012 1.9e+02 3 24 .. 1349 1370 .. 1347 1371 .. 0.79 5 ? -2.6 0.0 0.25 4.1e+03 19 28 .. 1433 1442 .. 1422 1443 .. 0.41 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 2.3e-05 B-TT-B-CCCCCCCCCCESEEECT CS Pentapeptide 2 nLsgAnLsganLsganlsgAnLtg 25 +Ls+++Ls +Ls+ +ls+ +L++ T138449_2 1128 DLSRVDLSRVDLSREDLSRVDLSR 1151 799999999999999999999986 PP == domain 2 score: 1.2 bits; conditional E-value: 0.016 -TT-EECCEEEC CS Pentapeptide 28 lsgAdLsganLs 39 ls+ dLs+++Ls T138449_2 1212 LSRVDLSRVDLS 1223 444444444443 PP == domain 3 score: 1.5 bits; conditional E-value: 0.014 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138449_2 1261 LSRVDLSYMHQSRVDLSRVNLS 1282 6788888888888888888886 PP == domain 4 score: 1.7 bits; conditional E-value: 0.012 -TT-B-CCCCCCCCCCESEEEC CS Pentapeptide 3 LsgAnLsganLsganlsgAnLt 24 Ls+++Ls + s+++ls+ nL+ T138449_2 1349 LSRVDLSYMHQSRVDLSRVNLS 1370 7888888888888888888886 PP == domain 5 score: -2.6 bits; conditional E-value: 0.25 ESEEECT-B- CS Pentapeptide 19 sgAnLtgAnl 28 s+ +L+++nl T138449_2 1433 SRVDLSRVNL 1442 3333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 15694.41 // Query: T138449_3 [L=3127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 15694.41 // Query: T107057_1 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 12129.92 // Query: T107057_2 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.17 12.1 0.7 0.26 11.5 0.7 1.2 1 DUF3566 Transmembrane domain of unknown function (DUF3566) Domain annotation for each model (and alignments): >> DUF3566 Transmembrane domain of unknown function (DUF3566) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.7 1.6e-05 0.26 2 40 .. 2033 2071 .. 2032 2081 .. 0.94 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.6e-05 DUF3566 2 rrarlqvsrvdpwSvlklsfllsvalfivlvvavavlyl 40 rra v+rv+p S+++ ++ sv +++ v+v l++ T107057_2 2033 RRAVCVVQRVSPESAVQCAVQCSVLRAVCSAVCVECLWF 2071 8999**********************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 11913.31 // Query: T107057_3 [L=2331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12349.25 // Query: T252794_1 [L=2077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 10803.53 // Query: T252794_2 [L=2077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0062 15.9 0.0 0.011 15.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 6.5e-07 0.011 139 181 .. 899 941 .. 892 941 .. 0.93 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 6.5e-07 Gag_p30 139 spaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 + a f+ rl + r +t dp+ + + + + fi+qsa+di+ T252794_2 899 NTAQFMARLAATLRCFTALDPKRSKGRLILNIHFITQSAPDIK 941 5689*************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 10424.46 // Query: T252794_3 [L=2077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-05 22.4 4.1 0.0002 21.1 4.1 1.8 1 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 4.1 1.2e-08 0.0002 2 18 .] 1018 1034 .. 1017 1034 .. 0.92 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 1.2e-08 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++C + T252794_3 1018 ACYKCQKSGHQAKECQQ 1034 7**************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11003.60 // Query: T229268_1 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 4176.81 // Query: T229268_2 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 84 (0.00515148); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 4176.81 // Query: T229268_3 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 4089.30 // Query: T376192_1 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2905.71 // Query: T376192_2 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 3018.47 // Query: T376192_3 [L=517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-136 454.0 13.9 7.7e-136 453.6 13.9 1.1 1 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 453.6 13.9 4.7e-140 7.7e-136 131 442 .. 149 447 .. 144 448 .. 0.99 Alignments for each domain: == domain 1 score: 453.6 bits; conditional E-value: 4.7e-140 DUF4641 131 sDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvverqavgElessssKKmqsvvwgkggsrPSypgatAa 230 sDE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vver+avgEl++ s KKmqs+vwgk+g+rPS++ga T376192_3 149 SDESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVVERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA--- 245 9************************************************************************************************... PP DUF4641 231 aaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLlGkskkvsllpsgpkqskhtgtGKksvarktresqavak 330 a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+LlGks + pk++kh+++GKk+++rktresqa+a+ T376192_3 246 --AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLLGKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAR 336 ..9**************************************************************99.......************************** PP DUF4641 331 eDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlPRgpapSgdqeppvrpprpeeqqqppqGaqgCprcvvLqke 430 eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++PR +a Sgd++ppv+pprpe+qqqpp GaqgCprc++Lq+e T376192_3 337 EDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRCILLQRE 435 ******************************************************************************7777766.************** PP DUF4641 431 iddLkeqLaamq 442 i+dL++qLaamq T376192_3 436 IEDLRDQLAAMQ 447 ***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 252 (0.0154544); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 2844.33 // Query: T052005_1 [L=1792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 10052.17 // Query: T052005_2 [L=1792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 10052.17 // Query: T052005_3 [L=1791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 10046.56 // Query: T229045_1 [L=3232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.54 # Mc/sec: 17122.60 // Query: T229045_2 [L=3232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.53 # Mc/sec: 17445.67 // Query: T229045_3 [L=3231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00094 18.5 0.0 0.0015 17.8 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 9.4e-08 0.0015 112 157 .. 64 108 .. 51 160 .. 0.90 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 9.4e-08 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalkes 157 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k++ T229045_3 64 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPP 108 89********************.9********************94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 16806.08 // Query: T184492_1 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 4988.57 // Query: T184492_2 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5149.49 // Query: T184492_3 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 6018.54 // Query: T164717_1 [L=678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 3344.21 // Query: T164717_2 [L=678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.57 # Mc/sec: 3344.21 // Query: T164717_3 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 4120.81 // Query: T369873_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 4910.12 // Query: T369873_2 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 4374.47 // Query: T369873_3 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 4296.35 // Query: T337863_1 [L=2196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 9816.22 // Query: T337863_2 [L=2196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.9 7.2 8.1 0.48 10.6 1.2 2.9 2 Toxin_2 Scorpion short toxin, BmKK2 Domain annotation for each model (and alignments): >> Toxin_2 Scorpion short toxin, BmKK2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.2 3e-05 0.48 2 16 .. 393 407 .. 392 410 .. 0.86 2 ? -2.0 0.9 0.26 4.2e+03 13 31 .. 1149 1164 .. 1147 1165 .. 0.82 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 3e-05 Toxin_2 2 kCtsskdClppCkka 16 C+s+++C++ C++ T337863_2 393 ICSSPRRCWQSCRTD 407 6***********975 PP == domain 2 score: -2.0 bits; conditional E-value: 0.26 Toxin_2 13 CkkatGcaaGKCmNgkCkC 31 Ck+ t ++ mN +C+C T337863_2 1149 CKDSTPIRN---MNITCEC 1164 777777777...******* PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.59 # Mc/sec: 10648.11 // Query: T337863_3 [L=2196] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2196 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 9376.69 // Query: T227486_1 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1310 (0.0803385); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.45s 00:00:01.80 Elapsed: 00:00:00.78 # Mc/sec: 1987.91 // Query: T227486_2 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1135 (0.0696063); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.43s 00:00:01.99 Elapsed: 00:00:00.89 # Mc/sec: 1739.00 // Query: T227486_3 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1325 (0.0812584); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.64 # Mc/sec: 2418.30 // Query: T173824_1 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 816 (0.0500429); expected 326.1 (0.02) Passed bias filter: 412 (0.0252668); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 4851.73 // Query: T173824_2 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 230 (0.0141052); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 3897.29 // Query: T173824_3 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3657.46 // Query: T195382_1 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-13 50.3 5.2 4e-13 49.5 5.2 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.5 5.2 2.5e-17 4e-13 20 200 .. 790 967 .. 770 968 .. 0.82 Alignments for each domain: == domain 1 score: 49.5 bits; conditional E-value: 2.5e-17 HHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXX..XXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHH CS GP41 20 sknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvp..ynase.sWervkkhlegiWnntevsldlsklhneiedi 116 +kn ++ + Q id+k +++n l + v+ + + + sl+++l+++C n C+T p yn+s +We vk hl+g + ++sld+skl+++ ++ T195382_1 790 KKNSTQMWNSQSGIDQKFANQINDLRQTVIWMADRIISLEHRLQMQCDWNTSDFCIT--Pf*YNESVhNWESVKRHLQG--SEDKLSLDISKLKEQTFEA 885 78999******************************************99999***99..646689888**********9..5889*************** PP HHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX.......XXXXX CS GP41 117 qnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraevqllllkkkk 200 ++++ l+ ++ ld++ l n++ ++Wv+ + ii+ + + v+ +l + + ++l + +q + + + l+++k T195382_1 886 SQAHLTALPSAEVLDGISEGLS-NLNPIQWVKS-LGGSTIINFVLCIICVIDLLFMCKIGKNTLQSNRDQCQPMIAMVHLNQRK 967 ******************7765.56666****4.44566777766666666666666666666666666666666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 6072.76 // Query: T195382_2 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-05 23.6 0.0 5.8e-05 22.8 0.0 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.0 3.5e-09 5.8e-05 123 163 .. 457 497 .. 431 502 .. 0.86 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 3.5e-09 HERV-K_env_2 123 ntevlvweecvansavilqnnefgtiidwaprgqfyhncsg 163 n++ l+w++cv+ +l n ti+dwap+g++ +cs T195382_2 457 NADKLMWKDCVSPEGTVLFNSSHYTIVDWAPKGHITNDCSQ 497 67789**********************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 8016.05 // Query: T195382_3 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-27 93.8 0.2 1.5e-26 93.0 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.0 0.2 9.4e-31 1.5e-26 1 90 [. 339 426 .. 339 430 .. 0.94 Alignments for each domain: == domain 1 score: 93.0 bits; conditional E-value: 9.4e-31 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp 90 a+twmd pi+vyvnds+w+pg +ddrcpa+p eg+ ni++g+rypp+clg + gcl +q w v +p + + h+vsg+sl+p T195382_3 339 AMTWMDAPIKVYVNDSIWMPGSVDDRCPAQPS-EGIPFNITLGFRYPPLCLGPTNGCLSLDIQTWAVTLPSGHSVPPL-GHLVSGLSLKP 426 68*****************************7.69***********************************98887766.59*******99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 6570.53 // Query: T090360_1 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.1 7.4 2 8.4 0.1 3.9 3 CBM_19 Carbohydrate binding domain (family 19) Domain annotation for each model (and alignments): >> CBM_19 Carbohydrate binding domain (family 19) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.3 0.0013 21 39 53 .. 183 197 .. 175 199 .. 0.90 2 ? 8.4 0.1 0.00012 2 38 53 .. 253 268 .. 241 270 .. 0.88 3 ? 3.3 0.2 0.0045 73 39 54 .. 285 300 .. 277 306 .. 0.86 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0013 CBM_19 39 vCdyGkWvvasCPsG 53 +C G W v++C +G T090360_1 183 MCPRGDWRVSPCVPG 197 79**********999 PP == domain 2 score: 8.4 bits; conditional E-value: 0.00012 CBM_19 38 avCdyGkWvvasCPsG 53 vC G W v++C +G T090360_1 253 PVCPRGEWTVSPCVPG 268 69***********999 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0045 CBM_19 39 vCdyGkWvvasCPsGv 54 +C G W +CP G T090360_1 285 LCPRGEWRAFPCPRGE 300 799**********995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 3862.12 // Query: T090360_2 [L=729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 3862.12 // Query: T090360_3 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 3529.97 // Query: T229483_1 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.46 # Mc/sec: 3457.87 // Query: T229483_2 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 2835.29 // Query: T229483_3 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 3378.21 // Query: T239548_1 [L=736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.60 # Mc/sec: 3509.28 // Query: T239548_2 [L=736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.72 # Mc/sec: 2924.40 // Query: T239548_3 [L=735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 3337.64 // Query: T219933_1 [L=1680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1221 (0.0748804); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 7394.15 // Query: T219933_2 [L=1680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 807 (0.049491); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.75 # Mc/sec: 6408.26 // Query: T219933_3 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 738 (0.0452594); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:00.85 # Mc/sec: 5650.98 // Query: T221795_1 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.72 # Mc/sec: 3564.12 // Query: T221795_2 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 4349.43 // Query: T221795_3 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 4419.49 // Query: T182785_1 [L=182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.59 # Mc/sec: 882.49 // Query: T182785_2 [L=181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 668 (0.0409665); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.55 # Mc/sec: 941.47 // Query: T182785_3 [L=181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-06 26.9 5.2 5.7 6.9 0.0 4.7 5 Rib Rib/alpha-like repeat Domain annotation for each model (and alignments): >> Rib Rib/alpha-like repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 0.089 1.4e+03 23 31 .. 71 79 .. 66 83 .. 0.84 2 ! 5.8 0.1 0.00075 12 12 31 .. 85 104 .. 80 109 .. 0.89 3 ! 6.8 0.0 0.00036 5.9 12 31 .. 110 129 .. 106 133 .. 0.90 4 ! 6.9 0.0 0.00035 5.7 12 31 .. 135 154 .. 131 160 .. 0.89 5 ! 6.3 0.0 0.00053 8.6 12 30 .. 160 178 .. 156 180 .. 0.91 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.089 Rib 23 dGTkytWke 31 dGT+ +W++ T182785_3 71 DGTQCSWNH 79 8******85 PP == domain 2 score: 5.8 bits; conditional E-value: 0.00075 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT+ +W++ T182785_3 85 TENTRNKPRMLDGTQRSWNH 104 8999**************85 PP == domain 3 score: 6.8 bits; conditional E-value: 0.00036 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT+ +W++ T182785_3 110 TENTRNKPRMLDGTQCSWNH 129 8999**************85 PP == domain 4 score: 6.9 bits; conditional E-value: 0.00035 Rib 12 tdgikNksdlPdGTkytWke 31 t++ +Nk+ + dGT+ +W++ T182785_3 135 TENTRNKPRMLDGTQCSWNH 154 8999**************85 PP == domain 5 score: 6.3 bits; conditional E-value: 0.00053 Rib 12 tdgikNksdlPdGTkytWk 30 t++ +Nk+ + dGT+ +W+ T182785_3 160 TENARNKPRMLDGTQCSWN 178 8999**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.70 # Mc/sec: 739.73 // Query: T265405_1 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 4334.59 // Query: T265405_2 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 4536.46 // Query: T265405_3 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 4465.58 // Query: T277503_1 [L=3092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.69 # Mc/sec: 12819.84 // Query: T277503_2 [L=3091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.74 # Mc/sec: 11949.76 // Query: T277503_3 [L=3091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 12454.68 // Query: T281910_1 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 1622.78 // Query: T281910_2 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1651.25 // Query: T281910_3 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.61 # Mc/sec: 1542.97 // Query: T340385_1 [L=1740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0078 15.3 0.2 0.012 14.7 0.2 1.1 1 NAP Nucleosome assembly protein (NAP) Domain annotation for each model (and alignments): >> NAP Nucleosome assembly protein (NAP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.2 7.5e-07 0.012 176 224 .. 430 474 .. 422 501 .. 0.79 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 7.5e-07 E----B-TT--TTS----------...-------------GGGGS--B- CS NAP 176 gtkIdWkegkdvtvktvkkkqknkktketrtvtkkvpkeSFFnfFsppk 224 ++ W ++d kk+k+kk+k+t + +k+++ SFF fF++++ T340385_1 430 HCTSAWVTEQDSISPK--KKKKKKKKKQTSILEKVYK--SFFFFFETES 474 5677899999987655..4444455699****99988..******9864 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 7214.27 // Query: T340385_2 [L=1739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.74 # Mc/sec: 6722.95 // Query: T340385_3 [L=1739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 7316.15 // Query: T111401_1 [L=2869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 14656.65 // Query: T111401_2 [L=2869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 11560.17 // Query: T111401_3 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 472 (0.0289464); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 12431.61 // Query: T124920_1 [L=280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 1483.39 // Query: T124920_2 [L=279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 1376.16 // Query: T124920_3 [L=279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.53 # Mc/sec: 1505.98 // Query: T156338_1 [L=3520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.71 # Mc/sec: 14183.27 // Query: T156338_2 [L=3520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:00.74 # Mc/sec: 13608.27 // Query: T156338_3 [L=3519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.69 # Mc/sec: 14590.23 // Query: T196158_1 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 5960.06 // Query: T196158_2 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.77 # Mc/sec: 5108.62 // Query: T196158_3 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 6448.59 // Query: T234000_1 [L=9718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.45s 00:00:02.93 Elapsed: 00:00:00.72 # Mc/sec: 38613.26 // Query: T234000_2 [L=9718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.40s 00:00:02.38 Elapsed: 00:00:00.69 # Mc/sec: 40292.10 // Query: T234000_3 [L=9718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.39s 00:00:02.45 Elapsed: 00:00:00.69 # Mc/sec: 40292.10 // Query: T085617_1 [L=8180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.39s 00:00:02.14 Elapsed: 00:00:00.67 # Mc/sec: 34927.75 // Query: T085617_2 [L=8180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.35s 00:00:02.06 Elapsed: 00:00:00.66 # Mc/sec: 35456.95 // Query: T085617_3 [L=8179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-11 41.8 0.0 5.6e-11 41.3 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 3.4e-15 5.6e-11 305 348 .. 1804 1849 .. 1789 1884 .. 0.81 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 3.4e-15 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085617_3 1804 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 1849 59***************************************96331 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8179 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.00u 0.39s 00:00:02.39 Elapsed: 00:00:00.69 # Mc/sec: 33911.20 // Query: T099657_1 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6439.38 // Query: T099657_2 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7058.55 // Query: T099657_3 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7058.55 // Query: T281173_1 [L=5930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.61 # Mc/sec: 27811.02 // Query: T281173_2 [L=5930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 838 (0.0513921); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.41s 00:00:02.16 Elapsed: 00:00:00.70 # Mc/sec: 24235.32 // Query: T281173_3 [L=5930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.34s 00:00:01.68 Elapsed: 00:00:00.62 # Mc/sec: 27362.45 // Query: T345600_1 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 2345.88 // Query: T345600_2 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 2255.65 // Query: T345600_3 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-07 30.3 0.4 7e-07 28.6 0.4 2.0 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.4 4.3e-11 7e-07 1 18 [. 271 288 .. 271 288 .. 0.95 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 4.3e-11 DUF1725 1 kFagKWMELEnIILSEis 18 +Fag+WM LE IILS+ + T345600_3 271 SFAGTWMNLEAIILSKLT 288 7**************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2250.15 // Query: T229252_1 [L=2313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 12031.09 // Query: T229252_2 [L=2313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 14.4 0.3 0.028 14.4 0.3 2.0 2 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.3 1.7e-06 0.028 4 29 .. 867 892 .. 866 895 .. 0.92 2 ? -4.0 0.7 0.95 1.5e+04 3 11 .. 1851 1859 .. 1850 1861 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.7e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229252_2 867 VWGASCPAPHNPCRLQLELCGPCQKR 892 5**********************976 PP == domain 2 score: -4.0 bits; conditional E-value: 0.95 Toxin_13 3 atwGaayPa 11 atwGa P+ T229252_2 1851 ATWGAGCPS 1859 8****9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 11816.25 // Query: T229252_3 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12248.59 // Query: T063376_1 [L=117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.50 # Mc/sec: 669.43 // Query: T063376_2 [L=117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.50 # Mc/sec: 669.43 // Query: T063376_3 [L=117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.49 # Mc/sec: 683.10 // Query: T085623_1 [L=1411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7762.75 // Query: T085623_2 [L=1411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 7475.24 // Query: T085623_3 [L=1410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-11 41.7 0.0 6e-11 41.2 0.0 1.1 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.2 0.0 3.7e-15 6e-11 305 346 .. 632 673 .. 617 707 .. 0.86 Alignments for each domain: == domain 1 score: 41.2 bits; conditional E-value: 3.7e-15 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevl 346 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++ T085623_3 632 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLK 673 69************************************9874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 7469.94 // Query: T027826_1 [L=980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 5289.84 // Query: T027826_2 [L=980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 4672.69 // Query: T027826_3 [L=979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5001.34 // Query: T230537_1 [L=1181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 5449.42 // Query: T230537_2 [L=1180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 5444.81 // Query: T230537_3 [L=1180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 7032.87 // Query: T279376_1 [L=1344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.73 # Mc/sec: 5267.06 // Query: T279376_2 [L=1343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 6512.02 // Query: T279376_3 [L=1343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1343 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 6196.93 // Query: T346525_1 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.70 # Mc/sec: 2587.01 // Query: T346525_2 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.64 # Mc/sec: 2829.54 // Query: T346525_3 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3545.19 // Query: T032259_1 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 5484.16 // Query: T032259_2 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.73 # Mc/sec: 3981.65 // Query: T032259_3 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 4036.95 // Query: T155142_1 [L=8254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 687 (0.0421317); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.04u 0.50s 00:00:03.54 Elapsed: 00:00:00.89 # Mc/sec: 26531.79 // Query: T155142_2 [L=8254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.06u 0.46s 00:00:03.52 Elapsed: 00:00:00.96 # Mc/sec: 24597.18 // Query: T155142_3 [L=8253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 926 (0.0567889); expected 326.1 (0.02) Passed bias filter: 405 (0.0248375); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.35u 0.46s 00:00:04.80 Elapsed: 00:00:01.12 # Mc/sec: 21080.74 // Query: T061387_1 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 3896.18 // Query: T061387_2 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.63 # Mc/sec: 3896.18 // Query: T061387_3 [L=857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 4019.23 // Query: T353738_1 [L=8791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.45s 00:00:03.14 Elapsed: 00:00:00.89 # Mc/sec: 28257.93 // Query: T353738_2 [L=8791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-05 24.1 9.7 0.00015 21.7 9.7 2.3 1 DUF2054 Uncharacterized conserved protein (DUF2054) Domain annotation for each model (and alignments): >> DUF2054 Uncharacterized conserved protein (DUF2054) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 9.7 9.1e-09 0.00015 4 116 .. 6211 6301 .. 6208 6304 .. 0.75 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 9.1e-09 DUF2054 4 ekCrnsvqgkklivDdrGivCsrsellkngCCeveeekeeekskrfsCktCdkkseCCeiyeyCvsCClepdkkelleevlekaakkrkkvllssved 101 ++C+nsvqgk livD+ G+vC+r++ll +gC + s k+C CC+ C C l p+ + ++ ++ +r+++ + T353738_2 6211 NQCQNSVQGKLLIVDEPGYVCERRDLLVQGCNV----------HSPSVKQC-----CCD---GCWPCLLLPAAQPGASPGASW--CSRTSSWQ--SKI 6286 68****************************977..........23356677.....885...689999999998866544443..23333333..256 PP DUF2054 102 qfelClakCRtsses 116 + e C akCRtss+ T353738_2 6287 SIESCPAKCRTSSQG 6301 789999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.61u 0.42s 00:00:03.03 Elapsed: 00:00:00.86 # Mc/sec: 29243.67 // Query: T353738_3 [L=8790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-30 104.2 3.3 8e-15 54.4 0.4 2.2 2 Transposase_22 L1 transposable element 3.5e-09 35.9 1.5 4.9e-08 32.3 0.7 2.5 2 DUF1725 Protein of unknown function (DUF1725) 0.00074 19.0 0.0 0.0013 18.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.1 0.2 3e-17 1.6e-13 205 292 .. 8462 8547 .. 8455 8552 .. 0.86 2 ! 54.4 0.4 1.5e-18 8e-15 300 357 .. 8664 8722 .. 8652 8733 .. 0.85 Alignments for each domain: == domain 1 score: 50.1 bits; conditional E-value: 3e-17 HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEE.EESSHHHHHHHHHHHHHHS-EEETTEEEE.EEE---HHHH CS Transposase_22 205 lkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiiv.rttkvlnkdkilkavrekGrvtlkGkPir.ltadlsaetl 292 +l ++++i+ enfPnl k++ + iq ++ tP + +skr + rhiiv + + k +ilk +r k vt+kG i+ ad+s+et T353738_3 8462 IMQLMTMFEEIMAENFPNLMKDMHINIQAAQVTPSKMNSKRPTLRHIIV*LL---KCKVRILKVARGKKLVTYKGSSIK*Q-ADFSSETW 8547 4567889*****************************************8854...46789***************998543.67777775 PP == domain 2 score: 54.4 bits; conditional E-value: 1.5e-18 HHHHHHHHT.T---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTTT-SS CS Transposase_22 300 dviqilkek.kfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllkekner 357 + ++lkek + q r+lyPakls++ + e k f dk+kl+++++trPal+ +lke + T353738_3 8664 IINKVLKEKkNWQKRILYPAKLSFTCEEENKTFPDKQKLKEFVTTRPALQGMLKEVLQV 8722 456799997368*******************************************5553 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 0.039 2.1e+02 6 15 .. 2656 2665 .. 2656 2665 .. 0.89 2 ! 32.3 0.7 8.9e-12 4.9e-08 1 19 [] 3056 3074 .. 3056 3074 .. 0.98 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.039 DUF1725 6 WMELEnIILS 15 + ELEn+IL+ T353738_3 2656 FTELENTILK 2665 58*******7 PP == domain 2 score: 32.3 bits; conditional E-value: 8.9e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WMELE IILS+ sQ T353738_3 3056 SFAGTWMELEAIILSKLSQ 3074 7*****************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.0 2.3e-07 0.0013 111 158 .. 2456 2503 .. 2440 2519 .. 0.84 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 2.3e-07 .............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 111 trsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++++++ +ng++ e ++ k+g++qG+ l llfn++++ l r +r++ T353738_3 2456 KPTANIILNGQKLEAFPLKTGTRQGCSLPSLLFNIVLEVLARAIRQEK 2503 56778889***99********************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.45u 0.48s 00:00:02.93 Elapsed: 00:00:00.87 # Mc/sec: 28904.25 // Query: T272774_1 [L=397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0003 20.2 1.2 0.0029 17.1 0.1 2.9 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.1 0.047 7.7e+02 11 21 .] 173 183 .. 172 183 .. 0.87 2 ! 17.1 0.1 1.8e-07 0.0029 4 20 .. 272 288 .. 272 289 .. 0.91 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.047 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272774_1 173 WRGFVLTRSFR 183 9***9988886 PP == domain 2 score: 17.1 bits; conditional E-value: 1.8e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272774_1 272 VTVMQAHVRGWLERKRL 288 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 604 (0.0370416); expected 326.1 (0.02) Passed bias filter: 411 (0.0252054); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.64 # Mc/sec: 1774.61 // Query: T272774_2 [L=397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.55 # Mc/sec: 2065.00 // Query: T272774_3 [L=396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 66 (0.00404759); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 1953.26 // Query: T062999_1 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 4691.76 // Query: T062999_2 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 4607.98 // Query: T062999_3 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 4527.14 // Query: T000146_1 [L=3013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.68 # Mc/sec: 12676.00 // Query: T000146_2 [L=3013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.73 # Mc/sec: 11807.78 // Query: T000146_3 [L=3013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.89 # Mc/sec: 9685.03 // Query: T119712_1 [L=1146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.67 # Mc/sec: 4893.30 // Query: T119712_2 [L=1146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-23 82.4 1.9 4.7e-23 81.7 1.9 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.7 1.9 2.9e-27 4.7e-23 4 131 .. 1014 1144 .. 1011 1146 .] 0.94 Alignments for each domain: == domain 1 score: 81.7 bits; conditional E-value: 2.9e-27 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97 k+ +++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +k F++++ ++ l++l+++++ T119712_2 1014 KK-NNFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIhksiNVIHHINRTKDKNHMIISIDAEKVFNKIKQPFMLKTLNKLGI 1110 33.69**************************************************99999999999999***************************** PP T.........................TEEEEESB CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkg 131 + + +++i++++ ++++++ +n ++ e + k+g T119712_2 1111 DGMYLKIIRAIYDKPTANIILNRQKLEAFLLKTG 1144 *********************9998788877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 5464.19 // Query: T119712_3 [L=1146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-112 376.1 20.5 2.1e-110 368.9 20.5 2.4 1 Transposase_22 L1 transposable element 2.1e-06 27.5 0.5 7.2e-06 25.7 0.5 1.9 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.00062 19.9 0.0 0.0028 17.8 0.0 2.0 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 368.9 20.5 3.9e-114 2.1e-110 19 367 .. 142 464 .. 130 465 .. 0.91 Alignments for each domain: == domain 1 score: 368.9 bits; conditional E-value: 3.9e-114 XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXX CS Transposase_22 19 erstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellel 109 + Pt+e+sss at e++++++ f+elr+e+++++ +++elk ++++++ke + +k ++e + v + + l+el T119712_3 142 ISAFPTEEHSSSQAT--EQSWMENYFDELREEGFRRSvitNFSELKKDVRTHCKEAKnLEKRLDEWLTRINS------------VEKTLNYLMEL 222 45679**********..*******************8555799***********998777777775444333............22233479*** PP XXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT CS Transposase_22 110 ktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqsl.qviqdtvkrPnlrliGvdesed 202 kt ++e ++ + s+s d++eervs +ed+++e+++e k+rekr+k+++qsl i d vkrPnl liGv+es+ T119712_3 223 KTMAREHHDACT------------------SIS-S*FDQVEERVSVIEDQMNEMKQEEKFREKRVKRNKQSL*E-ICDCVKRPNLHLIGVPESDG 297 ********9999..................775.5559********************************9887.78****************** PP --HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHH CS Transposase_22 203 eqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek.GrvtlkGkPirltadlsaetlkarr 296 e+ +klen+l++ii+enfPnl+++an +iqei+r P+r++s+r+++rhiivr+tkv++k+k+l+a+r G vt kGkPirltad+saetl+arr T119712_3 298 ENATKLENTLQDIIQENFPNLARQANFQIQEIQRMPQRYSSRRTTPRHIIVRFTKVEMKEKMLRAAR-E*GWVTHKGKPIRLTADISAETLQARR 391 ******************************************************************9.5667*********************** PP HHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 297 ewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 ew+++++ilkek+fqPr++yPakls+i++Geik f +k++lrd+++trPal+++lk + er+++yq+l++ T119712_3 392 EWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTEKQMLRDFVTTRPALQEFLKKalNVERNNQYQPLQNL 464 ********************************************************999************95 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.5 1.3e-09 7.2e-06 17 118 .. 612 721 .. 598 722 .. 0.78 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 1.3e-09 Exo_endo_phos_2 17 nllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkeg.ptfeseng..ssiiDltltsdnlak 102 +++ l++l ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l + + k++ tf + + iD ++ s+ l+ T119712_3 612 FIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDRSMRHKvNKDIQDLNSALHQANLIDIyrtfHP-KSTeYTFFPAPHrtYLKIDHIVGSKALLS 703 455666677777765.8**************998888899999*********999966777444.44448887766644688************ PP Exo_endo_phos_2 103 s..leleeedlgSDHrpi 118 + ++ ++++SDH++i T119712_3 704 KckRTEIITNSLSDHSAI 721 *986667799*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 5.1e-07 0.0028 2 113 .] 501 718 .. 500 718 .. 0.68 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 5.1e-07 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.............................EEEEEEESSSTTSSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla.............................dadaskfgtgkgqggvav 68 t Nvng ++++ ++ +la+++++ + ++ + s ++++ ++d++ ++ +++++g + T119712_3 501 TLNVNG----LNSPIKRHRLANWIESR-PISVLYSG----DPSHMQRHT*aqnkgmeedlpsk*ktkkkagvailvsdKTDFKPTKIKRDKEGHYI 587 778888....66677778888888544.43333332....22222233355555555555566655544444444444334444444444555555 PP EECSEEEEE...............................EEEEEE-SS............................................... CS xxxxxxxxx...............................xxxxxxxxx............................................... RF Exo_endo_phos 69 lsrfpltsl...............................vivlGDfNa............................................... 86 +++ ++++ i++GDfN+ T119712_3 588 MVKGSIQQEltilnicapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrsmrhkvnkdiqdlnsalhqanlidiyrtfhpksteytffp 683 5555554448889999999999999999999999999999*********99999999999999999999999999999999999999999999999 PP .......-BEEEEEEHHHHTTEEEEEEECCH.SSB CS .......xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 .......rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + ++ SDH T119712_3 684 aphrtylKIDHIVGSKALLSKCKRTEIITNSlSDH 718 999998888******96666655555555557999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 815 (0.0499816); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.71 # Mc/sec: 4617.62 // Query: T271074_1 [L=3615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.82 # Mc/sec: 12612.07 // Query: T271074_2 [L=3615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.31s 00:00:01.71 Elapsed: 00:00:00.73 # Mc/sec: 14166.99 // Query: T271074_3 [L=3614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.84 # Mc/sec: 12308.38 // Query: T219931_1 [L=1500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1130 (0.0692996); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.70 # Mc/sec: 6130.35 // Query: T219931_2 [L=1500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 721 (0.0442169); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 6811.50 // Query: T219931_3 [L=1499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 651 (0.039924); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 8408.60 // Query: T124770_1 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 4434.29 // Query: T124770_2 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 4361.59 // Query: T124770_3 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 4031.17 // Query: T279154_1 [L=825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 3746.32 // Query: T279154_2 [L=825] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (825 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 4291.24 // Query: T279154_3 [L=824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4135.66 // Query: T018813_1 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-30 105.2 13.6 3.1e-30 105.2 13.6 4.4 4 CCDC144C CCDC144C protein coiled-coil region 0.0031 17.4 1.1 0.0031 17.4 1.1 3.4 4 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 6.5 0.47 3.8e+03 186 237 .. 152 203 .. 143 261 .. 0.60 2 ! 13.1 1.2 4.3e-06 0.035 96 143 .. 408 453 .. 395 454 .. 0.87 3 ! 105.2 13.6 3.7e-34 3.1e-30 184 304 .. 492 603 .. 481 604 .. 0.94 4 ? -5.4 21.1 1.8 1.5e+04 120 231 .. 650 765 .. 619 768 .. 0.78 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.47 CCDC144C 186 rdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 r q+ + l ++++e+e+ +++ +kq ++e +se + L + + T018813_1 152 RKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 5555555555555555555555555555555555555555555555554443 PP == domain 2 score: 13.1 bits; conditional E-value: 4.3e-06 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018813_1 408 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 453 689**********************9554.57..89*********9976 PP == domain 3 score: 105.2 bits; conditional E-value: 3.7e-34 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018813_1 492 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 582 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018813_1 583 MNECD-H*KESLFRYEREKAER 603 ****7.55589**********8 PP == domain 4 score: -5.4 bits; conditional E-value: 1.8 CCDC144C 120 afqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigk 215 + + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++ T018813_1 650 QVESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQE 749 3445557788899999999999999999999998444588999999999999998887777778899999999999999999776666666665526778 PP CCDC144C 216 qesleerlsqlqsenl 231 q ++ +l ql+++ + T018813_1 750 QAQYKKQLEQLNKDII 765 8899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.7 0.88 7.2e+03 14 57 .. 156 200 .. 150 236 .. 0.61 2 ! 17.4 1.1 3.8e-07 0.0031 24 94 .. 494 563 .. 490 564 .. 0.95 3 ? -2.6 0.0 0.59 4.8e+03 61 80 .. 607 626 .. 601 634 .. 0.73 4 ? -0.1 11.6 0.099 8e+02 9 97 .. 676 762 .. 670 767 .. 0.85 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 0.88 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvk.dankairdA 57 ++l+ + l + le+++e ++ +++ +++e + ++++ i++ T018813_1 156 QTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNtNKSEKIQLS 200 556666666666666666666666664444444333444444444 PP == domain 2 score: 17.4 bits; conditional E-value: 3.8e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018813_1 494 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 563 68999********************************************************76.9999986 PP == domain 3 score: -2.6 bits; conditional E-value: 0.59 XXXXXXXXXXXXXXXXXXXX CS Laminin_II 61 vkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018813_1 607 VRQLQQEAADSLKKLTMLES 626 78888888888888777765 PP == domain 4 score: -0.1 bits; conditional E-value: 0.099 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseike 97 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ + T018813_1 676 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLNK 762 55555666678999*********************************************************999994..4777776654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1704 (0.104501); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.74 # Mc/sec: 4326.04 // Query: T018813_2 [L=1118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 4920.63 // Query: T018813_3 [L=1118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-30 104.0 16.4 7.4e-30 104.0 16.4 2.2 2 CCDC144C CCDC144C protein coiled-coil region 1.8e-16 60.3 6.5 1.8e-16 60.3 6.5 3.4 4 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.0 16.4 9.1e-34 7.4e-30 1 96 [. 313 408 .. 313 409 .. 0.99 2 ? 0.4 0.7 0.032 2.6e+02 74 108 .. 777 811 .. 762 826 .. 0.71 Alignments for each domain: == domain 1 score: 104.0 bits; conditional E-value: 9.1e-34 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018813_3 313 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 408 9*********************************************************************************************95 PP == domain 2 score: 0.4 bits; conditional E-value: 0.032 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018813_3 777 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 811 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.5 0.26 2.1e+03 25 45 .. 257 277 .. 254 280 .. 0.85 2 ? -1.1 0.1 0.28 2.2e+03 2 22 .. 276 296 .. 275 310 .. 0.76 3 ? -4.6 6.5 2 1.6e+04 29 87 .. 334 391 .. 316 406 .. 0.58 4 ! 60.3 6.5 2.2e-20 1.8e-16 3 69 .. 770 835 .. 769 837 .. 0.93 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.26 DUF3496 25 snkteLekykqlyleelkvrk 45 n+ eLe+ ++y +e+++++ T018813_3 257 KNREELERKGKQYKKEVEAKQ 277 4789************99875 PP == domain 2 score: -1.1 bits; conditional E-value: 0.28 DUF3496 2 sqmElrikdLeselskmKtsq 22 +q+E +i++Le++ +++++ T018813_3 276 KQLEPTIQSLEMKPKTTRNTP 296 59999*******999998753 PP == domain 3 score: -4.6 bits; conditional E-value: 2 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 +Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018813_3 334 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 391 4555.345677777766666666666655566666665555555555555555554444 PP == domain 4 score: 60.3 bits; conditional E-value: 2.2e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018813_3 770 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 835 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 838 (0.0513921); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 4504.80 // Query: T295730_1 [L=726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.70 # Mc/sec: 2967.09 // Query: T295730_2 [L=725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.56 # Mc/sec: 3703.75 // Query: T295730_3 [L=725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 4148.20 // Query: T317178_1 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 851 (0.0521894); expected 326.1 (0.02) Passed bias filter: 430 (0.0263707); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 3438.39 // Query: T317178_2 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 3638.98 // Query: T317178_3 [L=636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 850 (0.0521281); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 3567.62 // Query: T001181_1 [L=1696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 8985.13 // Query: T001181_2 [L=1696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 9513.66 // Query: T001181_3 [L=1695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.53 # Mc/sec: 9149.26 // Query: T159476_1 [L=2518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 12863.52 // Query: T159476_2 [L=2518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 12863.52 // Query: T159476_3 [L=2517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 12858.41 // Query: T212591_1 [L=4786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.61 # Mc/sec: 22445.79 // Query: T212591_2 [L=4786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.60 # Mc/sec: 22819.89 // Query: T212591_3 [L=4785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.30s 00:00:01.63 Elapsed: 00:00:00.59 # Mc/sec: 23201.82 // Query: T375366_1 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-12 47.2 0.0 2.5e-12 46.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.7 0.0 1.5e-16 2.5e-12 124 222 .] 275 368 .. 270 368 .. 0.96 Alignments for each domain: == domain 1 score: 46.7 bits; conditional E-value: 1.5e-16 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 +++y+++ lpqG+++S ++f ++ + ++++ + g++ll+Y+DD+l+ +++ + + ++a+ +l+++g+k++++K +++ +++v yLG+t+ T375366_1 275 TTQYTWTQLPQGFKNSRIIFREALARDIQKFPAKDLGCVLLQYVDDLLLGHSTAVGCAKGMDALLWHLEDCGYKVSKKKAQIC-----RQQVCYLGFTI 368 6789********************99999999988************************************************.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 12082.80 // Query: T375366_2 [L=2153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-22 78.1 0.0 1.2e-21 77.3 0.0 1.3 1 RNase_H RNase H 5.4e-05 23.2 0.0 0.00013 22.1 0.0 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.3 0.0 1.5e-25 1.2e-21 5 138 .. 615 752 .. 612 752 .. 0.84 Alignments for each domain: == domain 1 score: 77.3 bits; conditional E-value: 1.5e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+DGs++ n +ge++ g+ v+ + + ++pl++ +++++aEL A++ aL+ + ++++vniytDS+Y++ +++ vh++ +++ +s +k++k T375366_2 615 ELYVDGSSFINpQGERCPGYaVVTLD-NVIEAKPLPQGTSAQKAELVALTRALElS--EGKTVNIYTDSRYAFLTLQ--VHGALYKEKGLlNSGGKNIKY 709 68*********889999999666656.457779999******************55..9**************9555..566644444443777778887 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlA 138 +e+ +ll+++ k++kv ++h++gH+ + ++gN aD A T375366_2 710 qQEILQLLEAVWKPQKVAVTHCRGHQQVstsvSRGNSWADTEA 752 89***********************988788888*****9865 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.0 1.6e-08 0.00013 3 37 .. 824 858 .. 823 858 .. 0.96 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 1.6e-08 zf-H2C2 3 ltHlGinkltallarkyhwlgiketvseVissCka 37 +tHlG++ l++ll+ ++++ ++ +++++V+++C++ T375366_2 824 TTHLGQESLEKLLSWYFYISHLPALAKTVAQQCVT 858 79*******************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 11406.24 // Query: T375366_3 [L=2153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 11406.24 // Query: T053198_1 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 6169.68 // Query: T053198_2 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6411.62 // Query: T053198_3 [L=1143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1143 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6411.62 // Query: T111350_1 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 5603.86 // Query: T111350_2 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 5496.09 // Query: T111350_3 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 5603.86 // Query: T215494_1 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 4512.55 // Query: T215494_2 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 463 (0.0283945); expected 326.1 (0.02) Passed bias filter: 253 (0.0155158); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 4512.55 // Query: T215494_3 [L=836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4599.33 // Query: T110539_1 [L=1279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 6903.78 // Query: T110539_2 [L=1279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 6533.93 // Query: T110539_3 [L=1279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6775.93 // Query: T194249_1 [L=4568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.30s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 22149.61 // Query: T194249_2 [L=4568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.4 7.1 26.3 44 4.2 0.1 8.3 9 RS4NT RS4NT (NUC023) domain Domain annotation for each model (and alignments): >> RS4NT RS4NT (NUC023) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.3 0.19 3.1e+03 4 15 .. 1785 1796 .. 1784 1798 .. 0.87 2 ? 0.9 0.1 0.029 4.8e+02 8 16 .. 2557 2565 .. 2555 2566 .. 0.91 3 ? 4.2 0.1 0.0027 44 7 16 .. 2624 2633 .. 2623 2634 .. 0.93 4 ? 4.2 0.1 0.0027 44 8 17 .. 2800 2809 .. 2798 2809 .. 0.91 5 ? 4.2 0.1 0.0027 44 7 16 .. 2865 2874 .. 2864 2875 .. 0.93 6 ? -2.1 0.1 0.25 4e+03 10 16 .. 2901 2907 .. 2900 2908 .. 0.85 7 ? 2.2 0.0 0.011 1.8e+02 8 17 .. 3107 3116 .. 3105 3116 .. 0.91 8 ? 1.9 0.0 0.014 2.2e+02 8 16 .. 3179 3187 .. 3177 3188 .. 0.91 9 ? 1.9 0.0 0.014 2.2e+02 8 16 .. 3318 3326 .. 3316 3327 .. 0.91 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 0.19 ---EETTTS-GG CS RS4NT 4 kkHLKrlaAPkh 15 kk+LK+l+A h T194249_2 1785 KKKLKSLSAGEH 1796 9********877 PP == domain 2 score: 0.9 bits; conditional E-value: 0.029 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194249_2 2557 KSLKAPGHW 2565 9******** PP == domain 3 score: 4.2 bits; conditional E-value: 0.0027 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194249_2 2624 LKSLSAPEHW 2633 9********* PP == domain 4 score: 4.2 bits; conditional E-value: 0.0027 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+APkhW+ T194249_2 2800 KSLSAPKHWQ 2809 9********5 PP == domain 5 score: 4.2 bits; conditional E-value: 0.0027 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194249_2 2865 LKSLSAPEHW 2874 9********* PP == domain 6 score: -2.1 bits; conditional E-value: 0.25 TTS-GGG CS RS4NT 10 laAPkhW 16 ++AP hW T194249_2 2901 ISAPEHW 2907 79***** PP == domain 7 score: 2.2 bits; conditional E-value: 0.011 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+AP hW+ T194249_2 3107 KSLSAPEHWQ 3116 9********5 PP == domain 8 score: 1.9 bits; conditional E-value: 0.014 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194249_2 3179 KSLSAPEHW 3187 9******** PP == domain 9 score: 1.9 bits; conditional E-value: 0.014 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194249_2 3318 KSLSAPEHW 3326 9******** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 21077.86 // Query: T194249_3 [L=4568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.61 # Mc/sec: 21423.40 // Query: T274863_1 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2393.19 // Query: T274863_2 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2387.69 // Query: T274863_3 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-21 75.3 0.2 6e-21 74.0 0.2 1.7 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.11 12.5 0.4 0.19 11.7 0.4 1.3 1 HTH_Tnp_IS630 Transposase Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.0 0.2 7.4e-25 6e-21 16 80 .] 197 262 .. 185 262 .. 0.87 Alignments for each domain: == domain 1 score: 74.0 bits; conditional E-value: 7.4e-25 Transposase_1 16 etpkkvpkpel.hqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 ++ k +pk++ +k+v++tVwW a+gli+ +fl+pg i se+Yaqq+++++qkl++++palvnr T274863_3 197 KNSKALPKAKTgNKKNVLVTVWWPAAGLIHHSFLNPGNAIMSEKYAQQIKEMHQKLKHLQPALVNR 262 5566777754315699************************************************98 PP >> HTH_Tnp_IS630 Transposase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.4 2.3e-05 0.19 46 104 .. 80 141 .. 68 156 .. 0.78 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.3e-05 HTH_Tnp_IS630 46 atkvetrkr...kidrkelkedvkknpdallkerakkfgvtpasllyalkklkitrkkksyl 104 ++++e+r +d+++l+ ++ p + e a + +v+ + +++ lk++ +k + l T274863_3 80 SLEDEERSGqssEVDNDQLRAIIETDPLTTTEEVAEEINVDHSMVIWHLKQIGKVKKLDKWL 141 5677777654569*************************************996555544444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 302 (0.0185208); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.53 # Mc/sec: 2342.64 // Query: T018836_1 [L=6932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-14 51.5 0.3 8e-13 48.3 0.1 2.1 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.018 2.9e+02 39 55 .. 1534 1550 .. 1532 1557 .. 0.88 2 ! 48.3 0.1 4.9e-17 8e-13 102 175 .. 1582 1655 .. 1574 1664 .. 0.92 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.018 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 e+k++ fk ftkkmd+ T018836_1 1534 ESKIDGFKCFTKKMDNR 1550 89*************96 PP == domain 2 score: 48.3 bits; conditional E-value: 4.9e-17 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++++ ++e+fa q++kDl+ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018836_1 1582 ELDQAIHFSIDAFHSVSELFASQSRKDLDLAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 1655 7999****************************************************************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.55u 0.34s 00:00:01.89 Elapsed: 00:00:00.67 # Mc/sec: 29598.92 // Query: T018836_2 [L=6931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-16 59.3 1.1 1.8e-08 34.1 0.4 2.1 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.0 1.4e-09 2.2e-05 2 29 .. 1496 1523 .. 1495 1525 .. 0.91 2 ! 34.1 0.4 1.1e-12 1.8e-08 185 228 .. 1664 1707 .. 1659 1713 .. 0.92 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 1.4e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018836_2 1496 EIAWRQGKRKAEKDEMVSARFFLALSPP 1523 679**********************975 PP == domain 2 score: 34.1 bits; conditional E-value: 1.1e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018836_2 1664 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 1707 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.98u 0.40s 00:00:02.38 Elapsed: 00:00:00.82 # Mc/sec: 24180.99 // Query: T018836_3 [L=6931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.40s 00:00:02.37 Elapsed: 00:00:00.79 # Mc/sec: 25099.26 // Query: T065982_1 [L=2372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-16 58.4 0.0 9.7e-16 57.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.098 12.8 0.0 0.88 9.7 0.0 2.1 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.8 0.0 1.2e-19 9.7e-16 3 155 .. 544 695 .. 542 698 .. 0.85 Alignments for each domain: == domain 1 score: 57.8 bits; conditional E-value: 1.2e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065982_1 544 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 639 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065982_1 640 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 695 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.0 0.097 7.9e+02 3 28 .. 879 904 .. 877 914 .. 0.82 2 ? 9.7 0.0 0.00011 0.88 65 98 .. 935 968 .. 921 971 .. 0.80 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.097 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065982_1 879 EEPWVTLDIMATQIQFLCDTKVNYSV 904 689*****************766665 PP == domain 2 score: 9.7 bits; conditional E-value: 0.00011 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065982_1 935 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 968 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.30s 00:00:01.46 Elapsed: 00:00:00.71 # Mc/sec: 9557.59 // Query: T065982_2 [L=2371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-17 62.6 0.0 7.1e-17 61.8 0.0 1.3 1 RNase_H RNase H 1.6e-05 25.0 0.0 2.7e-05 24.2 0.0 1.4 1 rve Integrase core domain ------ inclusion threshold ------ 0.026 13.9 0.1 0.073 12.4 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.8 0.0 1.3e-20 7.1e-17 8 135 .. 1491 1621 .. 1487 1627 .. 0.87 Alignments for each domain: == domain 1 score: 61.8 bits; conditional E-value: 1.3e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065982_2 1491 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1582 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065982_2 1583 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1621 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 5e-09 2.7e-05 55 116 .. 1796 1856 .. 1793 1856 .. 0.89 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 5e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065982_2 1796 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 1856 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.1 1.4e-05 0.073 126 221 .. 1144 1231 .. 1108 1232 .. 0.81 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 1.4e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065982_2 1144 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1230 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065982_2 1231 V 1231 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.74 # Mc/sec: 9166.25 // Query: T065982_3 [L=2371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00028 20.3 0.0 0.00044 19.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 2.7e-08 0.00044 152 210 .. 692 750 .. 675 751 .. 0.91 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 2.7e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065982_3 692 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 750 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.68 # Mc/sec: 9975.04 // Query: T280078_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1389 (0.0851834); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 2148.05 // Query: T280078_2 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2316 (0.142034); expected 326.1 (0.02) Passed bias filter: 617 (0.0378388); expected 326.1 (0.02) Passed Vit filter: 327 (0.020054); expected 16.3 (0.001) Passed Fwd filter: 87 (0.00533546); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.84 # Mc/sec: 1505.34 // Query: T280078_3 [L=442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2528 (0.155035); expected 326.1 (0.02) Passed bias filter: 647 (0.0396786); expected 326.1 (0.02) Passed Vit filter: 445 (0.0272906); expected 16.3 (0.001) Passed Fwd filter: 104 (0.00637802); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.38s 00:00:02.44 Elapsed: 00:00:00.77 # Mc/sec: 1642.19 // Query: T236022_1 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.61 # Mc/sec: 8343.31 // Query: T236022_2 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 7484.44 // Query: T236022_3 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.83 # Mc/sec: 6131.83 // Query: T353468_1 [L=1535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1512 (0.0927266); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 152 (0.00932172); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.85 # Mc/sec: 5166.32 // Query: T353468_2 [L=1535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1292 (0.0792346); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.40s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 6185.03 // Query: T353468_3 [L=1535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1330 (0.0815651); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.67 # Mc/sec: 6554.29 // Query: T316716_1 [L=1845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 491 (0.0301116); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.86 # Mc/sec: 6137.48 // Query: T316716_2 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 538 (0.032994); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.74 # Mc/sec: 7128.88 // Query: T316716_3 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.84 # Mc/sec: 6280.20 // Query: T111720_1 [L=6166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 17.6 3.8 0.0014 17.4 2.2 1.7 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 2.2 8.8e-08 0.0014 211 259 .. 5941 5989 .. 5933 5990 .. 0.92 2 ? -1.3 0.0 0.043 7.1e+02 292 332 .. 6016 6057 .. 6014 6060 .. 0.86 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 8.8e-08 HHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 211 ilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 i+++i en +l k+++ +iqe+++ Pn+ +sk ++r i ++++k++ T111720_1 5941 IFKEITVENSSDLWKKMDTQIQEAQKIPNKMNSKTFTARDIKIKLSKTK 5989 89*****************************************998875 PP == domain 2 score: -1.3 bits; conditional E-value: 0.043 HHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEES CS Transposase_22 292 lkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfi 332 l +rew d++++l k+ + + P kls+ + e f+ T111720_1 6016 LANQREWDDILKVLTFLKLPSKNTVPGkKLSFRNEDERHTFQ 6057 5678***************99999996369**9999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.02u 0.42s 00:00:02.44 Elapsed: 00:00:00.82 # Mc/sec: 21512.05 // Query: T111720_2 [L=6166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.35s 00:00:02.08 Elapsed: 00:00:00.79 # Mc/sec: 22328.96 // Query: T111720_3 [L=6166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.2 1.6 0.18 11.6 1.6 1.2 1 Sec8_exocyst Sec8 exocyst complex component specific domain Domain annotation for each model (and alignments): >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.6 1.1e-05 0.18 62 120 .. 5841 5899 .. 5836 5901 .. 0.92 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 1.1e-05 Sec8_exocyst 62 ehyqaFnssigsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyk 120 e + Fn+ + +k + i+e ++ +++lK+sl e ++ l + +k ++el++rs++ + T111720_3 5841 EQWENFNKETENAKKYQTEIMELKNMITALKKSLDEGNSRLDQAEKRISELKERSLEIN 5899 66789**************************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 651 (0.039924); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.66u 0.40s 00:00:03.06 Elapsed: 00:00:00.86 # Mc/sec: 20511.49 // Query: T021186_1 [L=548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-05 23.2 0.0 7.4e-05 22.4 0.0 1.3 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.0 4.6e-09 7.4e-05 7 31 .. 270 294 .. 270 302 .. 0.94 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 4.6e-09 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkv 31 +saqWl ge+pk++pkp+lhqkk+ T021186_1 270 QSAQWLGLGEAPKHFPKPNLHQKKC 294 799*********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 2411.90 // Query: T021186_2 [L=548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-23 81.0 1.6 6.8e-23 80.2 1.6 1.4 1 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.12 12.0 0.6 0.2 11.3 0.6 1.2 1 Pox_Ag35 Pox virus Ag35 surface protein Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 1.6 8.4e-27 6.8e-23 23 79 .. 282 342 .. 278 343 .. 0.87 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 8.4e-27 Transposase_1 23 kpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +++++q k+vm+tVwWsa++li+y+fl+ +et+tse+Yaqq+ +++qklq+++pa vn T021186_2 282 STSQSQtctkKNVMVTVWWSAASLIHYSFLNLSETVTSEKYAQQIHEMHQKLQCLQPAFVN 342 4444444444************************************************998 PP >> Pox_Ag35 Pox virus Ag35 surface protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.6 2.4e-05 0.2 135 178 .. 127 171 .. 122 180 .. 0.83 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 2.4e-05 Pox_Ag35 135 IikdlkkltarvsAvs.tvLedvQAasisRqftslvkaieelkal 178 +ik+ ++lt+ + ++ +L+d+Q +s sR+f+ ++a++ + + T021186_2 127 VIKQCRQLTTSIASLAqKLLTDIQYSSGSRSFAKETRALKMRSVV 171 89***********9973599**************99999765544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.68 # Mc/sec: 2305.49 // Query: T021186_3 [L=547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 2794.42 // Query: T124776_1 [L=3551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.33s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 14308.18 // Query: T124776_2 [L=3550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 15387.80 // Query: T124776_3 [L=3550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.64 # Mc/sec: 15868.67 // Query: T381560_1 [L=5191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.34s 00:00:01.94 Elapsed: 00:00:00.86 # Mc/sec: 17268.10 // Query: T381560_2 [L=5190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.75 # Mc/sec: 19796.94 // Query: T381560_3 [L=5190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.69 # Mc/sec: 21518.42 // Query: T099916_1 [L=3520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.80 # Mc/sec: 12587.65 // Query: T099916_2 [L=3520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 13608.27 // Query: T099916_3 [L=3520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.70 # Mc/sec: 14385.89 // Query: T344692_1 [L=1456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.8 11.8 0.25 11.6 11.8 1.5 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.28 9.8 17.2 0.45 9.1 17.2 1.2 1 Presenilin Presenilin 0.96 8.0 54.7 1.3 7.6 54.7 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 2.7 6.5 9.0 3.9 6.0 9.0 1.1 1 SAPS SIT4 phosphatase-associated protein 7.2 6.5 13.7 11 5.9 13.7 1.2 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 11.8 7.7e-05 0.25 20 69 .. 294 343 .. 221 370 .. 0.56 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 7.7e-05 RNA_pol_Rpc4 20 vsaaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkk 69 ++++ ++k+e++++++ k+k ++e+k++ke ++e+e kke kke kk+++ T344692_1 294 KEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERE 343 22222222222222222222222222333333333333333333322222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 17.2 0.00014 0.45 236 307 .. 283 354 .. 273 439 .. 0.56 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00014 Presenilin 236 kaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseee 307 ++++++e++k++e++++e+ke+e+e+e ++k ++++++++e+++e+++++++++e+++e+e++++++++++e T344692_1 283 ERKRKKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERERKKERKKRKKE 354 122222222222222222222222222222222222222222222222222122221111111111111111 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 54.7 0.00039 1.3 127 212 .. 280 362 .. 276 390 .. 0.53 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00039 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 127 ekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgkee 212 +++ k +k+++++kek+r+++kekekek++kk++++e++k++er+k++er+k++kk +++k+++++ke+kk k++k+ sgk++ T344692_1 280 KRKERKRKKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKK---ERKKERERKKERKKRKKEKRLSGKAR 362 222222223333335555555555555555555555555555555555555444442...24444444444444444444444443 PP >> SAPS SIT4 phosphatase-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.0 0.0012 3.9 249 324 .. 285 349 .. 223 383 .. 0.50 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0012 SAPS 249 erDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseede 324 +r ++r++ +e ++ ++++ e+++e+e +++ +++ ++++++++++e k++ ++e++++ e ++e + T344692_1 285 KRKKERKKRKE------KKRKEKK-----EKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERERKKERK 349 22222222222......1111111.....11111111111111111111111111111111111111111111111 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 13.7 0.0035 11 128 194 .. 287 355 .. 240 386 .. 0.53 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0035 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee..eaeekkakvr 194 ++e++k +e++ ++++++e++ke+++++++e++++++++k+++ +++ + e+k+++e ++ +k++k + T344692_1 287 KKERKKRKEKKRKEKKEKEKEKERKKKGKKERKKKKERKKEKERKKERKKERKKERErkKERKKRKKEK 355 222222222222233333333333332222222222222222222222222211111212222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2250 (0.137986); expected 326.1 (0.02) Passed bias filter: 743 (0.045566); expected 326.1 (0.02) Passed Vit filter: 423 (0.0259414); expected 16.3 (0.001) Passed Fwd filter: 82 (0.00502882); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.42u 0.42s 00:00:02.84 Elapsed: 00:00:00.89 # Mc/sec: 4680.19 // Query: T344692_2 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2085 (0.127867); expected 326.1 (0.02) Passed bias filter: 682 (0.0418251); expected 326.1 (0.02) Passed Vit filter: 412 (0.0252668); expected 16.3 (0.001) Passed Fwd filter: 68 (0.00417024); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.42s 00:00:02.73 Elapsed: 00:00:00.75 # Mc/sec: 5550.01 // Query: T344692_3 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 10.3 18.0 0.27 9.8 18.0 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 18.0 1.6e-05 0.27 234 312 .. 279 353 .. 265 400 .. 0.40 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 1.6e-05 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeee 312 ++++++e+e++k+++++++++ke+++e+e ++++++++++e+e+++e+++++++++e+++e+++++++++++ +e+ T344692_3 279 KEERKKEKERKKEKKRKEKKRKERKRERERKKEKRKERKKEKERKKERKRKKERKKERKKERKRKKERKKEK----KER 353 122222222222222222222222222222222222222222222111111111111111111111111111....111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2160 (0.132467); expected 326.1 (0.02) Passed bias filter: 703 (0.043113); expected 326.1 (0.02) Passed Vit filter: 441 (0.0270453); expected 16.3 (0.001) Passed Fwd filter: 88 (0.00539679); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.63u 0.44s 00:00:03.07 Elapsed: 00:00:01.01 # Mc/sec: 4121.29 // Query: T344807_1 [L=3160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.77 # Mc/sec: 11740.55 // Query: T344807_2 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-123 412.3 15.8 1.4e-123 412.3 15.8 1.9 2 Transposase_22 L1 transposable element 3.4e-38 131.2 1.5 6e-38 130.4 1.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.0002 21.5 0.0 0.00041 20.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.074 13.2 3.8 0.18 11.9 3.8 1.6 1 KLRAQ Predicted coiled-coil domain-containing prote 0.17 12.0 2.5 0.33 11.1 2.5 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 1.1 9.8 5.4 0.61 10.6 2.5 2.0 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.3 0.21 5.8e+02 214 269 .. 1933 1989 .. 1928 1992 .. 0.87 2 ! 412.3 15.8 5e-127 1.4e-123 103 368 .] 2582 2831 .. 2569 2831 .. 0.98 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.21 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS.HHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk.vlnkdkilkavr 269 k +een n +++ + + +tP+ + k + + +i+++ k+ i++ r T344807_2 1933 KTLEENIGNTIQDIGMGKDFMTKTPKARATKAKIDKWVIIKLKSfCIAKETIIRLNR 1989 5689************************************98762578999998777 PP == domain 2 score: 412.3 bits; conditional E-value: 5e-127 ..XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE CS Transposase_22 103 nkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrli 195 kel+elktk++el+ke++ l+sr+++leervs +ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrli T344807_2 2582 LKELMELKTKARELRKECR------------------GLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLI 2656 59*****************..................89****************************************************** PP S----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE--- CS Transposase_22 196 GvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadls 288 Gv+ s+ e+++klen l++ii+enfPnl+++anv+iqei+rtP+r++ +ra++rh+i+r+tkv++k+k+l+a+rekGrvtlkGkPirlt+dls T344807_2 2657 GVPKSDGENGTKLENSLQDIIQENFPNLARQANVQIQEIQRTPQRYSLRRATPRHVIIRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTSDLS 2749 ********************************************************************************************* PP HHHHHHHHHH.HHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 289 aetlkarrew.tdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 aetl+arr +++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq+l++++ T344807_2 2750 AETLQARR-Q*GPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEvlNMERNNRYQPLQNHA 2831 ******99.6669********************************************************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.4 1.5 2.2e-41 6e-38 4 212 .. 1483 1706 .. 1479 1732 .. 0.92 Alignments for each domain: == domain 1 score: 130.4 bits; conditional E-value: 2.2e-41 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG..GGG-E CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr..kltaf 95 k+ +++Rpisl+++d+k+lnk++a+r++++++ l++++q+gf pg + + + + ++++++ + k++++++ D++k s++++ l+ +l+++ T344807_2 1483 KK-ENFRPISLMNIDVKILNKILANRIQQHIKILINHDQVGFIPGMQSWFNRhisiNIIHQINRTNDKNHMIISTDIEK--PSIKFNTLSC*kTLNKL 1577 33.79****************************************9999999***88888888889999**********..6********888***** PP EET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHH CS RVT_1 96 kvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqel 183 +++ + ++++++++ ++++++ +ng++ e+++ k+g++qG++lSPllfn++ + l r +r++ ++v+l+++aDD++ + ++ ++q+l T344807_2 1578 GIDGMYLKTLRAIYDKPTANIILNGQKLETFPLKTGTRQGCPLSPLLFNIVWEVLVRAIREEEetkgiqtgrEEVKLSLFADDMIGYLENpIVSAQNL 1675 **************************99*********************************99***************************6677**** PP HHHHHHHHHHTT--BEGGG-EEE.......E CS RVT_1 184 leaveewlkesglkinpeKtklvlfsg..ks 212 l+ v+++ k sg+kin +K++++l+++ ++ T344807_2 1676 LKLVRNFSKVSGYKINVQKSQAFLYTNnrQT 1706 ***********************98333432 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 1.5e-07 0.00041 5 92 .. 2870 3012 .. 2866 3054 .. 0.75 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 1.5e-07 ESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH........................EEEEEEESSSTTSSEEEEEECSEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 5 vngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla........................dadaskfgtgkgqggvavlsrfpl 74 vng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ ++d++ ++ +++++g ++++ ++ T344807_2 2870 VNG----LNAPIKRHRLANWIKSQDPSVCCIQETHLMCRDTHRLKIkgwrkiyqangk*kkagvailvsdKTDFKPTKIKRDKEGHYIMVKGSI 2959 555....56677889******************9999888777777878888888888877777777777556666666666677777777777 PP EEE................................EEEEEE-SS...-BEEEE CS xxx................................xxxxxxxxx...xxxxxx RF Exo_endo_phos 75 tsl................................vivlGDfNa...rlDril 92 ++ +++GDfN+ +lDr T344807_2 2960 QQEeltilniyapntgaprfikqvlsdlqrdlgshRLIMGDFNTplsTLDRST 3012 55578888888888888888888888888888888888******888777654 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 3.8 6.6e-05 0.18 33 89 .. 2586 2638 .. 2572 2646 .. 0.66 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 6.6e-05 KLRAQ 33 eelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 elk+k+ r ++E L r +qLe rv+++ +e++e +++ +k ++k ++++ T344807_2 2586 MELKTKA---RELRKECRGLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 2638 2455555...5555699999*******************98755.665533333332 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 2.5 0.00012 0.33 23 98 .. 2577 2649 .. 2566 2659 .. 0.83 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00012 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 23 edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaele 98 + ++ ++el+el +k rel++e l+++ N+l + ++ + ++ +e++ e+k +++k+ e+ l+e+ + ++ T344807_2 2577 NRDKCLKELMELKTKARELRKECRGLRSRCNQLEERVSVMEDE---MNEMKREGKFREKRIKRNEQSLQEIWDYVK 2649 4467799******************************998875...689999999999999999999999876665 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 2.5 0.00022 0.61 26 95 .. 2574 2648 .. 2566 2650 .. 0.73 2 ? -1.7 0.0 1.5 4.1e+03 8 53 .. 2985 3030 .. 2981 3038 .. 0.71 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00022 Syntaxin-6_N 26 elledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreev 95 ++ + + ++ el+ +eLrk++r ++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + v T344807_2 2574 RITNRDKClKELMELKTKARELRKECRGLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSLQEIWDYV 2648 44444444557889****************************987332222447778888888888887776655 PP == domain 2 score: -1.7 bits; conditional E-value: 1.5 Syntaxin-6_N 8 eeVqkslnkleslyrrweelledtssstseeldetrteLrkalrsi 53 ++ q l + + +++ ++ l++ + st++++++ ++eL++al+++ T344807_2 2985 SDLQRDLGSHRLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQV 3030 5666677777777777764444444457999999999999999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.67 # Mc/sec: 13488.60 // Query: T344807_3 [L=3159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-19 67.9 4.7 9.3e-19 67.4 4.7 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.4 4.7 5.7e-23 9.3e-19 1 78 [. 2496 2569 .. 2495 2571 .. 0.95 Alignments for each domain: == domain 1 score: 67.4 bits; conditional E-value: 5.7e-23 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkeke 78 +G k+ nrk++nsk +++ +P+ke+sssPat e++++++df+elr+e++ + ++y+el+e+i++k+ke+e ++k+++ T344807_3 2496 MGEKQ---NRKTGNSKKQSAFPPPKERSSSPAT--EQSWMENDFDELREEGF-R*SNYSELREDIQTKGKEVEnFEKNLK 2569 67888...*************************..****************9.7779****************9***986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.66 # Mc/sec: 13692.97 // Query: T350651_1 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 595 (0.0364896); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 1766.45 // Query: T350651_2 [L=388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 1947.37 // Query: T350651_3 [L=388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1003 (0.0615111); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 1734.38 // Query: T381551_1 [L=2130] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2130 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.73 # Mc/sec: 8347.35 // Query: T381551_2 [L=2129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 8120.94 // Query: T381551_3 [L=2129] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2129 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 738 (0.0452594); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:00.80 # Mc/sec: 7613.38 // Query: T222616_1 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 16.0 11.1 0.012 16.0 11.1 10.9 7 FAM27 FAM27 D and E protein family 0.35 10.7 9.8 0.67 9.8 9.8 1.4 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.4 22.1 2 1.6e+04 45 90 .. 76 120 .. 55 121 .. 0.79 2 ? -19.0 26.9 2 1.6e+04 44 87 .. 143 185 .. 123 197 .. 0.51 3 ? -9.1 10.7 2 1.6e+04 53 61 .. 182 190 .. 164 218 .. 0.57 4 ? -17.8 27.2 2 1.6e+04 45 74 .. 271 316 .. 255 333 .. 0.57 5 ? -13.8 16.7 2 1.6e+04 24 62 .. 439 478 .. 427 520 .. 0.73 6 ? -26.1 35.9 2 1.6e+04 34 91 .] 520 581 .. 474 594 .. 0.60 7 ? 16.0 11.1 1.5e-06 0.012 54 79 .. 683 708 .. 680 721 .. 0.79 Alignments for each domain: == domain 1 score: -5.4 bits; conditional E-value: 2 FAM27 45 tirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartk 90 + r + htht tht t+ r + + r R + +ht th++ T222616_1 76 HSRTHIHTHTYTHTCTH-SRTHTHMHIYTRTYRYTCTHTLTHTHIY 120 44556678888888887.4667778888999***********9965 PP == domain 2 score: -19.0 bits; conditional E-value: 2 FAM27 44 GtirPkththtgthtqtdRe.reRnrqrlRdrerRengrhtrtha 87 + r t tht tht t++ R + + + + ++h+ T222616_1 143 THTRIYTCTHTCTHTGTHKYtYTRINMHSHAYTHAYT--YVHRHT 185 3444445566666666665312233333222222222..222222 PP == domain 3 score: -9.1 bits; conditional E-value: 2 FAM27 53 htgthtqtd 61 h+ tht td T222616_1 182 HRHTHTYTD 190 223333322 PP == domain 4 score: -17.8 bits; conditional E-value: 2 FAM27 45 tirPkththtgthtqtdRere.RnrqrlRd...............r 74 + P thth th t+ + r R + T222616_1 271 HTCPLTHTHAHTHALTHTHATsHPHTRARThapapkhahtdapapT 316 6678899999998777765431334444544555544444444322 PP == domain 5 score: -13.8 bits; conditional E-value: 2 FAM27 24 kkeaeqkrqaamreialwatGtirPkth.thtgthtqtdR 62 + + + +++ + + + ++ + P h th t t+t R T222616_1 439 HTQSHTHKGPTVLYTHMHTQSHTGPTVHfTHICTITHTPR 478 3344444666666666667777777665566666666655 PP == domain 6 score: -26.1 bits; conditional E-value: 2 FAM27 34 amreialwatGtirPkththtgthtqtdRereRnrqrlRd...rerRen.grhtrthartkt 91 ++ + +G + th t tht+t R r+ ++ R+n t h++t+t T222616_1 520 HVCTCTHTHQGPTVHFTHVCTCTHTHTPRANCTLYTRMHIhnlTHTRANcTLYTCMHMHTHT 581 34444555566666667777778888887665433333224576677775333444444443 PP == domain 7 score: 16.0 bits; conditional E-value: 1.5e-06 FAM27 54 tgthtqtdRereRnrqrlRdrerRen 79 + tht+t+RereR+r r+R+rer ++ T222616_1 683 RDTHTHTHRERERERERERERERENE 708 56999999999999999999987654 PP >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 9.8 8.2e-05 0.67 12 43 .. 683 710 .. 680 720 .. 0.55 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 8.2e-05 DUF3915 12 rechrghccdrdrerererederekerekkke 43 r+ h + +rererere+ere+ere ++e T222616_1 683 RDTHT----HTHRERERERERERERERENEEE 710 67776....33444444444445555544443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1079 (0.066172); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 3719.08 // Query: T222616_2 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00037 20.8 14.1 0.00037 20.8 14.1 11.9 8 FAM27 FAM27 D and E protein family ------ inclusion threshold ------ 0.77 9.6 10.0 1.6 8.6 10.0 1.4 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -17.2 28.3 2 1.6e+04 40 63 .. 74 97 .. 61 122 .. 0.53 2 ? -15.5 24.3 2 1.6e+04 49 88 .. 127 165 .. 116 182 .. 0.56 3 ? -15.4 23.3 2 1.6e+04 48 85 .. 176 210 .. 168 229 .. 0.55 4 ? -4.6 4.8 2 1.6e+04 50 54 .. 269 273 .. 246 286 .. 0.53 5 ? -21.2 25.8 2 1.6e+04 45 61 .. 288 304 .. 255 332 .. 0.49 6 ? -22.5 26.4 2 1.6e+04 42 90 .. 476 527 .. 444 547 .. 0.62 7 ? -4.2 4.8 2 1.6e+04 46 57 .. 574 585 .. 558 596 .. 0.61 8 ! 20.8 14.1 4.5e-08 0.00037 45 81 .. 677 713 .. 675 720 .. 0.83 Alignments for each domain: == domain 1 score: -17.2 bits; conditional E-value: 2 FAM27 40 lwatGtirPkththtgthtqtdRe 63 + ++ + +ththt +ht+ + T222616_2 74 SHTHAHTYTRTHTHTHAHTHAHIH 97 444455555666666666665543 PP == domain 2 score: -15.5 bits; conditional E-value: 2 FAM27 49 kththtgthtqtd.RereRnrqrlRdrerRengrhtrthar 88 + +tht ++t+t+ R r R + + ht th++ T222616_2 127 QAYTHTCIYTRTHtRIRTRAYTHVHTHAL--TQAHTSTHTH 165 56788888888874556666555554222..2222222222 PP == domain 3 score: -15.4 bits; conditional E-value: 2 FAM27 48 PkththtgthtqtdRereRnrqrlRdrerRengrhtrt 85 + ht+tg+ht+++ +q ++ +h ++ T222616_2 176 THIHTYTGIHTHIQTYTYTHTQVHMYTHAY---THAHR 210 344666777777766555555544433322...22222 PP == domain 4 score: -4.6 bits; conditional E-value: 2 FAM27 50 ththt 54 thth T222616_2 269 THTHA 273 33332 PP == domain 5 score: -21.2 bits; conditional E-value: 2 FAM27 45 tirPkththtgthtqtd 61 ++rP hth +h + + T222616_2 288 HMRPLIHTHVHAHMHPH 304 44444444433333322 PP == domain 6 score: -22.5 bits; conditional E-value: 2 FAM27 42 atGtirPkththtgthtqtdRereRnrqrlRd.rerRen..grhtrthartk 90 +G + th t tht+t+ + + + ++ + + ht ha+ + T222616_2 476 HQGPTVHFTHVCTCTHTHTKGQLYTLHTYAHNhTHTKGQlyTLHTYAHAHIH 527 4555555566667777777655443333333322222222344554444444 PP == domain 7 score: -4.2 bits; conditional E-value: 2 FAM27 46 irPkththtgth 57 + thth th T222616_2 574 VCTCTHTHSLTH 585 334456666555 PP == domain 8 score: 20.8 bits; conditional E-value: 4.5e-08 FAM27 45 tirPkththtgthtqtdRereRnrqrlRdrerRengr 81 +i+ kt tht tht+ +RereR+r r+R+r +R+ g T222616_2 677 KIKTKTETHTHTHTERERERERERERERERMKRKCGD 713 6888999999999999999999999999999998864 PP >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 10.0 0.00019 1.6 15 49 .. 685 718 .. 678 725 .. 0.55 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00019 DUF3915 15 hrghccdrdrerererederekerekkk.erhavcn 49 h ++ +rererere+ere+er k+k ++ cn T222616_2 685 HTH--THTERERERERERERERERMKRKcGDRQNCN 718 442..3345566666666666666555412344566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 972 (0.05961); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 3172.16 // Query: T222616_3 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0087 16.5 9.9 0.0087 16.5 9.9 12.1 7 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -55.2 69.0 1 1.6e+04 46 88 .. 67 110 .. 20 199 .. 0.70 2 ? -8.8 12.7 1 1.6e+04 45 61 .. 200 216 .. 169 224 .. 0.66 3 ? -9.1 12.6 1 1.6e+04 48 62 .. 203 217 .. 197 270 .. 0.73 4 ? -20.2 27.9 1 1.6e+04 32 86 .. 269 319 .. 241 337 .. 0.51 5 ? -6.2 10.3 1 1.6e+04 53 91 .] 435 476 .. 426 478 .. 0.57 6 ? -19.8 25.5 1 1.6e+04 2 64 .. 492 552 .. 491 590 .. 0.45 7 ! 16.5 9.9 5.3e-07 0.0087 47 75 .. 679 706 .. 674 717 .. 0.66 Alignments for each domain: == domain 1 score: -55.2 bits; conditional E-value: 1 FAM27 46 irPkththtgthtqtdRereRnrqrlRdrerRen.grhtrthar 88 +r +th+ht tht+t+ + + l + ++ +h + h++ T222616_3 67 VRIHTHSHTLTHTHTHAHIHTHMHTLTHTYTHAHiHTHIQIHMH 110 33344444555555555544444444443333333333333322 PP == domain 2 score: -8.8 bits; conditional E-value: 1 FAM27 45 tirPkththtgthtqtd 61 i+ +th htg++t t+ T222616_3 200 CIHMHTHMHTGIYTCTH 216 44556777777766665 PP == domain 3 score: -9.1 bits; conditional E-value: 1 FAM27 48 PkththtgthtqtdR 62 +th htg++t t+ T222616_3 203 MHTHMHTGIYTCTHT 217 578899998887774 PP == domain 4 score: -20.2 bits; conditional E-value: 1 FAM27 32 qaamreialwatGtirPkthth..tgthtqtdRereRnrqrlRdrerRengrhtrth 86 +m + +t + rP+ ht tht t+ + + +R +++ht th T222616_3 269 PTHMPPHPHTCT-HTRPHPHTCdlSSTHTCTHTCTRTQ-----TCTHRCTRTHTCTH 319 555555555554.5566666531134444444322222.....22233333333333 PP == domain 5 score: -6.2 bits; conditional E-value: 1 FAM27 53 htgthtqtdRereRnrqrlRd..rerRen.grhtrthartkt 91 ht +ht + +r + + +R+n t+ h +t+t T222616_3 435 HTYAHTISHTQRANCTLHTYAhtITHRANcTLYTHMHNHTHT 476 666666666665555544433335566664445555555554 PP == domain 6 score: -19.8 bits; conditional E-value: 1 FAM27 2 htPkadpr.rkrL.ttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtqtdRer 64 htP+a+ r+ t +++ a+ +m+ + ++ t+ + h ht tht+ + T222616_3 492 HTPRANCTlYTRMhTITHTPRANCTLY----TRMHMHTYTPRTNCTLYTRMHMHTYTHTKGQLYT 552 666666655333313334444443322....2344555555555666667777777777654333 PP == domain 7 score: 16.5 bits; conditional E-value: 5.3e-07 FAM27 47 rPkththtgthtqtdRereRnrqrlRdre 75 +Pk ht thtq +RereR+r r+R+re T222616_3 679 KPKP-RHTHTHTQRERERERERERERERE 706 6766.555567766666666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1027 (0.062983); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 3219.50 // Query: T124830_1 [L=384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 2241.96 // Query: T124830_2 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2282.70 // Query: T124830_3 [L=383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2236.12 // Query: T028418_1 [L=2272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 12036.68 // Query: T028418_2 [L=2272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 12263.78 // Query: T028418_3 [L=2272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11817.83 // Query: T068777_1 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 10933.57 // Query: T068777_2 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 718 (0.0440329); expected 326.1 (0.02) Passed bias filter: 459 (0.0281491); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:00.60 # Mc/sec: 10022.44 // Query: T068777_3 [L=2102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.5 3.7 0.12 12.3 3.7 1.6 1 Eapp_C E2F-associated phosphoprotein 0.067 12.8 15.5 0.11 12.2 15.5 1.3 1 Coilin_N Coilin N-terminus 0.2 11.3 15.3 0.31 10.7 15.3 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 0.28 11.1 2.0 0.45 10.5 2.0 1.2 1 DDHD DDHD domain 0.71 8.5 20.0 0.98 8.1 20.0 1.1 1 NARP1 NMDA receptor-regulated protein 1 1.7 6.8 9.8 2.6 6.2 9.8 1.1 1 Rrn6 RNA polymerase I-specific transcription-initia 2.7 7.2 16.5 4.4 6.6 16.5 1.2 1 DUF1510 Protein of unknown function (DUF1510) 3.1 6.8 12.6 4.6 6.3 12.6 1.1 1 CCDC71L Coiled-coil domain-containing protein 71L 5.1 6.3 8.8 8.4 5.6 8.8 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 5.1 6.1 10.0 7.8 5.5 10.0 1.1 1 FLO_LFY Floricaula / Leafy protein 5.2 5.6 14.1 7.6 5.1 14.1 1.1 1 Tim54 Inner membrane protein import complex subunit 5.2 6.6 10.7 8 6.0 10.7 1.1 1 AAA_11 AAA domain 6.7 6.0 17.8 11 5.3 17.8 1.2 1 Sec62 Translocation protein Sec62 Domain annotation for each model (and alignments): >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 3.7 9.4e-05 0.12 76 117 .. 337 393 .. 327 472 .. 0.45 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 9.4e-05 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeee...............e 117 ++++e+e++++kk+k+++k++++++++++++eeeeee+++e + T068777_3 337 KEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEkekgrrkkkkqlvrlR 393 333333332222222222222222222222222222222211223344444555550 PP >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 15.5 8.7e-05 0.11 82 138 .. 330 386 .. 287 388 .. 0.63 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 8.7e-05 Coilin_N 82 tkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 +k++++++e+e+++ + k+ + + +kk+kkr++ ++e++e+++++++k+k ++kkk T068777_3 330 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKK 386 344444444444444455555555555555555555555555555555555555554 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 15.3 0.00024 0.31 84 154 .. 324 388 .. 310 410 .. 0.52 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00024 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkke 154 p+lkkk +e +e +ke+eee++ e+ +k+++++++k++k+++ ++k+e+eeee++k+k+k +++kkk+ T068777_3 324 PDLKKKEKE---KEMKKEKEEEERRER-KKRKRRRKKKRKKRRR--RKKEEEEEEEKKKEKEKGRRKKKKQ 388 455666554...344444444444444.4444444444443333..2222333333333333333333333 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 2.0 0.00036 0.45 128 189 .. 328 386 .. 277 416 .. 0.49 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00036 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 ++e++k+ +++k++e+ +e ++++k++++++++++++++++ee++e ++ke e+ ++++k T068777_3 328 KKEKEKEMKKEKEEEERRE----RKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKKK 386 2222222222222222111....1122222222222222222222222222222333222222 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 20.0 0.00078 0.98 386 449 .. 326 387 .. 304 396 .. 0.49 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00078 HHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......----- CS NARP1 386 ledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked 449 l+ k+k+ke +ke++++++ + ++rk+ rkk++k++++++kee+e+++k+kek+ + ++kk++ T068777_3 326 LKKKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKE--KGRRKKKK 387 333333333333333333444444444444555554445554444444433333..22222222 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 9.8 0.0021 2.6 745 790 .. 338 380 .. 322 430 .. 0.53 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0021 Rrn6 745 sleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsk 790 + e+ee+r+r++rk++++++rk++ r+r+++++++e++++++ k T068777_3 338 EKEEEERRERKKRKRRRKKKRKKR---RRRKKEEEEEEEKKKEKEK 380 111222222222222222222222...2222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 16.5 0.0035 4.4 54 113 .. 328 387 .. 318 405 .. 0.39 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0035 DUF1510 54 seeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevt 113 ++e++k+ kke++ee+ +e k+ + ++++ k+ ++++ee+eek+ke+++ ++++ T068777_3 328 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKK 387 222222223333333333333333333333333333333333333333333333333333 PP >> CCDC71L Coiled-coil domain-containing protein 71L # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 12.6 0.0037 4.6 291 349 .. 330 390 .. 290 418 .. 0.59 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0037 CCDC71L 291 akakkikakesvqarterkkqksssetvGqKrkr.aeeakelpakkkar.lvpqsekselg 349 k k++k+ + +++r erkk+k+++++ +Kr+r +e++e +kkk++ ++ +++k++l+ T068777_3 330 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRrKKEEEEEEEKKKEKeKGRRKKKKQLV 390 3455555555555555555555555555444433133333333333333033344444433 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 8.8 0.0067 8.4 19 74 .. 329 385 .. 304 396 .. 0.40 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0067 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee..kldk 74 e++++ ++ekee+e++e+++ ++ +++++ ++k+ee+e+ee +++e+e + +k T068777_3 329 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEE-KKKEKEkgRRKK 385 222222222222222222222222222222222222222222222.222222122222 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 10.0 0.0062 7.8 163 213 .. 335 385 .. 307 402 .. 0.50 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0062 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS FLO_LFY 163 GGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag 213 + ++ee +rk++k+rr+kk++++++ +++ee+eee ++++e+ + + T068777_3 335 MKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKK 385 333444444445555555544444444444444333333333333322222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 14.1 0.006 7.6 188 249 .. 321 385 .. 317 398 .. 0.38 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.006 Tim54 188 GPldapeepeeeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeekeeeeeeeekek.kkkv 249 G l +++e+e++ ++e+eeee++e++++++ ++++++++++k+ee+eeee+++ekek ++k+ T068777_3 321 GSLPDLKKKEKEKEMKKEKEEEERRERKKRKRrrKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKK 385 44444444444443333333333333333333112222222222222222222333333223333 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 10.7 0.0063 8 133 195 .. 329 391 .. 314 417 .. 0.64 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0063 AAA_11 133 eleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleeevld 195 ++++ + + +++eee +++k++k ++k+k+k++++r+k ++e +e +ke e+ +++ ++++++ T068777_3 329 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKKQLVR 391 222222222233333334566666666666666666666666666777777776666666654 PP >> Sec62 Translocation protein Sec62 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 17.8 0.0088 11 21 100 .. 328 404 .. 322 418 .. 0.40 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0088 Sec62 21 kkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYvW 100 kk+++k+ +k+ke++++++ +k +++ kk++++ r +k++e+e+++kk+ +k+k ++kkk +l ++ +f + e + W T068777_3 328 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKK-EKEKGRRKKKKQLVRLRDLTF--ALENWSW 404 2222222222222222333333333333333333444443333333332.333334444444444444444..4455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1942 (0.119097); expected 326.1 (0.02) Passed bias filter: 892 (0.0547038); expected 326.1 (0.02) Passed Vit filter: 383 (0.0234883); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 2.30u 0.37s 00:00:02.67 Elapsed: 00:00:00.67 # Mc/sec: 8975.32 // Query: T336952_1 [L=1836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 10298.99 // Query: T336952_2 [L=1836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 10100.93 // Query: T336952_3 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 10293.38 // Query: T156298_1 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 678 (0.0415798); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 12873.74 // Query: T156298_2 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 676 (0.0414571); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 13103.62 // Query: T156298_3 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 12873.74 // Query: T354620_1 [L=1152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 6337.84 // Query: T354620_2 [L=1152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 6218.26 // Query: T354620_3 [L=1152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 6591.35 // Query: T044796_1 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7834.27 // Query: T044796_2 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 7982.28 // Query: T044796_3 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 8141.92 // Query: T293372_1 [L=2092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 11083.07 // Query: T293372_2 [L=2092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 11083.07 // Query: T293372_3 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 11503.84 // Query: T156299_1 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.36 10.7 2.3 9.3 6.4 0.1 3.2 2 AT_hook AT hook motif Domain annotation for each model (and alignments): >> AT_hook AT hook motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.1 0.00057 9.3 2 10 .. 520 528 .. 519 530 .. 0.87 2 ? 2.5 0.3 0.01 1.7e+02 2 7 .. 1453 1458 .. 1452 1460 .. 0.95 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00057 AT_hook 2 RkRGRPrKa 10 ++RGRP+K T156299_1 520 GGRGRPAKQ 528 59*****95 PP == domain 2 score: 2.5 bits; conditional E-value: 0.01 AT_hook 2 RkRGRP 7 ++RGRP T156299_1 1453 KPRGRP 1458 8***** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 630 (0.0386361); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 12197.54 // Query: T156299_2 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 11979.73 // Query: T156299_3 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 579 (0.0355084); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 12423.42 // Query: T091369_1 [L=4904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 581 (0.0356311); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.33s 00:00:01.83 Elapsed: 00:00:00.63 # Mc/sec: 22269.06 // Query: T091369_2 [L=4904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 626 (0.0383908); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.60 # Mc/sec: 23382.52 // Query: T091369_3 [L=4904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.59 # Mc/sec: 23778.83 // Query: T027960_1 [L=5813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.65 # Mc/sec: 25584.62 // Query: T027960_2 [L=5813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.63 # Mc/sec: 26396.83 // Query: T027960_3 [L=5813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.61 # Mc/sec: 27262.30 // Query: T167928_1 [L=861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-16 59.7 1.3 3.5e-16 58.5 1.3 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00018 21.3 0.0 0.00029 20.7 0.0 1.1 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.5 1.3 4.3e-20 3.5e-16 2 34 .. 492 524 .. 491 526 .. 0.92 Alignments for each domain: == domain 1 score: 58.5 bits; conditional E-value: 4.3e-20 --B-TTT-SSBS-TTT---SEEGGGEE---XXX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsaneg 34 pgl ++CkkgkHwa++Chskfdk+Gnp s n T167928_1 492 PGLYLKCKKGKHWANQCHSKFDKDGNPISRNAM 524 8999************************98765 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 3.5e-08 0.00029 43 113 .. 276 348 .. 266 352 .. 0.83 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 3.5e-08 Gag_p24 43 r..vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalek 113 ++ ++l+ +++w +e + + ++++pi+++ d+ll g a + q+ ++ +v+ q+r ++++a+ek T167928_1 276 AclAPAQFLQfKTWWPDEASIQ-AACSAQIQPPINVTTDQLLRVGGWAALDAQVVMQDDVIDQLRGVCIRAWEK 348 2236677778889999998888.677778889**************999888888888**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 4647.50 // Query: T167928_2 [L=861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-29 102.5 0.0 2.8e-24 86.0 0.0 2.3 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 2.7e-06 27.0 0.1 6.6e-06 25.8 0.1 1.7 1 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 0.012 15.5 0.1 0.034 14.1 0.1 1.7 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 5.1e-06 0.028 1 39 [. 232 272 .. 232 282 .. 0.83 2 ! 86.0 0.0 5.1e-28 2.8e-24 112 205 .] 347 440 .. 338 440 .. 0.93 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 5.1e-06 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalae..qalpkdlek 39 +k L+++k+a++qygp sp+v+ l +++a+ q++p d T167928_2 232 FKLLNEFKQAINQYGPRSPFVMGLSKNVATssQMIPIDGTL 272 689**********************9997522668888655 PP == domain 2 score: 86.0 bits; conditional E-value: 5.1e-28 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCqgvggavhkarvl 205 +ki + g++ + ++ ++QGpkEpy df+a l+++l+k++ad +a+d++++ La++NANp+Cq++l ++ ++ l d+++aC+ +gg hka +l T167928_2 347 KKISSGGEQYPYFSAVKQGPKEPYADFIAWLQESLKKVIADSTAQDIVLQLLAFDNANPKCQAAL*PVRG-KAHLVDYIKACDSIGGNLHKATLL 440 78999999999***************************************************99776544.689******************986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 0.1 1.2e-09 6.6e-06 43 83 .. 61 101 .. 61 102 .. 0.88 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 1.2e-09 Gag_p10 43 GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevL 83 G +d+e+W+ vg+ lk +a + g e ip++v+s+w+li++ L T167928_2 61 GNMDVEVWEEVGSALK-KAYKDGaEDIPITVWSVWALIHSTL 101 789*************.5555666**************9988 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.1 6.3e-06 0.034 23 47 .. 641 665 .. 638 675 .. 0.83 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6.3e-06 HERV-K_REC 23 stkkaepptwaqlkkltqlatkyle 47 t + +pptw q+kkl+q+ l T167928_2 641 NTHRKQPPTWGQIKKLSQMVEENLR 665 588999************9877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 306 (0.0187661); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4647.50 // Query: T167928_3 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-05 22.7 0.0 0.0001 21.9 0.0 1.3 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.0 6.4e-09 0.0001 2 42 .. 20 60 .. 19 62 .. 0.88 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 6.4e-09 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee 42 ++ +l++ ++Ll++ G+kvs+ + l +++++ve++cPWFp e T167928_3 20 HKAYLSLPRQLLRKGGVKVST-S*LMQLFSMVEKYCPWFPTE 60 577999999**********96.6667899***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 74 (0.00453821); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 4642.10 // Query: T001679_1 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6970.52 // Query: T001679_2 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 6590.31 // Query: T001679_3 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 6472.63 // Query: T276137_1 [L=7161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 48 (0.0029437); expected 326.1 (0.02) Passed bias filter: 14 (0.00085858); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.35s 00:00:01.77 Elapsed: 00:00:00.66 # Mc/sec: 31040.01 // Query: T276137_2 [L=7161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.32s 00:00:01.75 Elapsed: 00:00:00.61 # Mc/sec: 33584.27 // Query: T276137_3 [L=7161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 31 (0.00190114); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.25s 00:00:01.77 Elapsed: 00:00:00.63 # Mc/sec: 32518.10 // Query: T259819_1 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3494.70 // Query: T259819_2 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 3182.67 // Query: T259819_3 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 2829.04 // Query: T129068_1 [L=3446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.79 # Mc/sec: 12479.01 // Query: T129068_2 [L=3446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.85 # Mc/sec: 11598.14 // Query: T129068_3 [L=3446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.68 # Mc/sec: 14497.68 // Query: T293089_1 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4918.43 // Query: T293089_2 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 4125.13 // Query: T293089_3 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 3875.12 // Query: T180605_1 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.75 # Mc/sec: 4890.11 // Query: T180605_2 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.78 # Mc/sec: 4702.03 // Query: T180605_3 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.60 # Mc/sec: 6112.64 // Query: T364253_1 [L=334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0073 16.1 4.2 0.012 15.4 4.2 1.3 1 DUF3439 Domain of unknown function (DUF3439) ------ inclusion threshold ------ 0.1 12.6 0.3 0.29 11.1 0.3 1.7 1 DUF2256 Uncharacterized protein conserved in bacteria (DUF2 Domain annotation for each model (and alignments): >> DUF3439 Domain of unknown function (DUF3439) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 4.2 1.5e-06 0.012 30 69 .. 161 200 .. 142 229 .. 0.80 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 1.5e-06 DUF3439 30 sakcsgsgkpvrsiicpttttttttttttmpttttlpttt 69 cs +p+ s+ tt tt+tttttt +t +l t T364253_1 161 VESCSQPARPLLSLAQTTTKTTATTTTTTKHATCALAYTN 200 5679************999999999999999999987553 PP >> DUF2256 Uncharacterized protein conserved in bacteria (DUF2256) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.3 3.6e-05 0.29 12 27 .. 82 97 .. 76 99 .. 0.92 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 3.6e-05 DUF2256 12 vCgrpftwRkkWekdW 27 C+ pf R+kW + W T364253_1 82 SCQVPFFGRRKWIRSW 97 7*************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 1837.53 // Query: T364253_2 [L=333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 816 (0.0500429); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 1536.54 // Query: T364253_3 [L=333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 1536.54 // Query: T185828_1 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.56 # Mc/sec: 3811.03 // Query: T185828_2 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3442.22 // Query: T185828_3 [L=745] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (745 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 3437.61 // Query: T106643_1 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-16 60.6 0.0 4.2e-16 59.3 0.0 1.6 1 Pep_M12B_propep Reprolysin family propeptide 5e-15 55.8 0.5 7.7e-15 55.2 0.5 1.2 1 Reprolysin Reprolysin (M12B) family zinc metalloproteas 0.0057 16.7 0.8 0.0097 15.9 0.8 1.2 1 Reprolysin_5 Metallo-peptidase family M12 0.0064 16.9 0.2 0.011 16.1 0.2 1.3 1 Reprolysin_3 Metallo-peptidase family M12B Reprolysin-lik ------ inclusion threshold ------ 0.14 11.7 0.0 0.22 11.0 0.0 1.2 1 Reprolysin_4 Metallo-peptidase family M12B Reprolysin-lik Domain annotation for each model (and alignments): >> Pep_M12B_propep Reprolysin family propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.3 0.0 1.3e-19 4.2e-16 3 125 .. 491 597 .. 484 615 .. 0.86 Alignments for each domain: == domain 1 score: 59.3 bits; conditional E-value: 1.3e-19 Pep_M12B_propep 3 viPvrvdeegeflshelkkkrrrRslseeeekeerlsyrlkafgkefhLnLeknsellapgftvetrredgeereespeeeehCyYqGtvrgep 96 viP++v +rR e +++lsy+++++g++++++++++++++ +++ v+t +++g +e+ p + ++CyY +++g p T106643_1 491 VIPRKVP--------------HRRGG-VE--MPDQLSYSMHFRGRRHVIHMKLKKNMMPRHLPVFTNNDQGAMQENYPFVPRDCYYDCYLEGVP 567 4444444..............23333.22..369*********************************999999999999999************ PP Pep_M12B_propep 97 gssvalstCsG.lrGvirteneeYfIePle 125 gs ++l tC G lrG++++++ +Y I+Ple T106643_1 568 GSVATLDTCRGgLRGMLQVDDLTYEIKPLE 597 *********9659****************7 PP >> Reprolysin Reprolysin (M12B) family zinc metalloprotease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.2 0.5 2.4e-18 7.7e-15 4 187 .. 657 835 .. 654 844 .. 0.86 Alignments for each domain: == domain 1 score: 55.2 bits; conditional E-value: 2.4e-18 EEEEEE-HHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEE-SS--SS---SSHHHHHHHHHHHHHHCTTTS-..SEEEEEESS.--STT CS Reprolysin 4 elfivvdkklfkkmgsdveavrqkvlevvnlvnkiykelnirvvLvglEiWsdedkievskdaeetLeeflkwkeellkkrkkhdaaqLlsgk.efekk 101 +l+ v + lf+++ ++ ++ ++v+ + ++ +i+k + ++v + l iW+d+d + + a+ ++ ef +wk +++ +hd+ ++++ + + T106643_1 657 KLHYTVTNGLFMQNP-NMSHIIENVVIINSIIHTIFKPVYLNVYVRVLCIWNDMDIVMYNMPADLVVGEFGSWKYYEWFSQIPHDTSVVFTSN*L-GN- 752 566666777776655.9999*****************************************************************9988876553.33. PP --EEE-TT-TTSTTTSEEEEE--SSSHHHHHHHHHHHHHHHCT---GHHTTS--STTS-BTTST.TTTS---C--HHHHHHHHHHC CS Reprolysin 102 tvGaayvgglCskeksggvaedkkknlealavilaqeLghnlGlthdeekeCkceekgvCiMneeagsssgvkFskcsiedfeqfl 187 + a ++g+C+++ ++ + + +l a++ a+ Lghn+Gl+hd+ +C+c ++++ +M++ + + s+cs e ++ + T106643_1 753 SECYASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHDSV-GCYCFRRTNYLMAP--VPDLNDMMSNCSYEIIQRKF 835 46899********88887777777999999*******************.9****9*******9..66667799****98766655 PP >> Reprolysin_5 Metallo-peptidase family M12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.8 3e-06 0.0097 140 186 .. 780 815 .. 751 825 .. 0.75 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 3e-06 Reprolysin_5 140 atevqvvaHElGHnfGavHDcdsssesqsCslsnstepaggryiMap 186 + v+aH lGHn+G +HD + C ++ ++ +y+Map T106643_1 780 FRGACVTAHALGHNMGLRHDSVG------C-----YCFRRTNYLMAP 815 466789**************994......4.....345699999998 PP >> Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.2 3.3e-06 0.011 81 124 .] 756 799 .. 742 799 .. 0.91 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.3e-06 Reprolysin_3 81 lAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfganHt 124 +A + ++cn++++a +++ ++ ga ++aH +GHn+g++H+ T106643_1 756 YASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHD 799 588899*******999999988888999***************7 PP >> Reprolysin_4 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 6.7e-05 0.22 138 193 .. 785 832 .. 776 839 .. 0.85 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 6.7e-05 Reprolysin_4 138 ifAHEiGHtfGaaHdlsdegeglsskteegsgqtIMsyaseasqeafapisirlia 193 + AH GH++G+ Hd + g+ ++ + +++M+++ + +++++++s ++i T106643_1 785 VTAHALGHNMGLRHD--SVGC-----YCFRRTNYLMAPVPDL-NDMMSNCSYEIIQ 832 57************9..4678.....89999*******9876.5899999999984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 5608.96 // Query: T106643_2 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 6730.75 // Query: T106643_3 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-21 76.4 2.8 2e-21 76.4 2.8 3.6 4 ADAM_CR ADAM cysteine-rich 2.5e-16 60.1 26.2 2.5e-16 60.1 26.2 3.2 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -12.2 10.1 2 1.6e+04 15 15 .. 887 887 .. 858 916 .. 0.62 2 ! 76.4 2.8 2.4e-25 2e-21 1 109 [. 941 1057 .. 941 1061 .. 0.86 3 ? 1.6 2.9 0.043 3.5e+02 1 20 [. 1065 1085 .. 1065 1091 .. 0.89 4 ? -5.1 4.9 2 1.6e+04 4 27 .. 1089 1112 .. 1087 1118 .. 0.60 Alignments for each domain: == domain 1 score: -12.2 bits; conditional E-value: 2 ADAM_CR 15 C 15 C T106643_3 887 C 887 2 PP == domain 2 score: 76.4 bits; conditional E-value: 2.4e-25 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatvi 90 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ T106643_3 941 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNIL 1037 9**************************************999975.4699****98444355699********************9553455559999 PP ADAM_CR 91 qtkiknkeCvgidvh.eedv 109 ++ik+++C+g+++h ++d T106643_3 1038 VHDIKEEKCFGYEAHqGTDL 1057 999999*******9745555 PP == domain 3 score: 1.6 bits; conditional E-value: 0.043 ADAM_CR 1 dgtpCke.ayCykgkCktrde 20 dg +C +yC+k +C+++++ T106643_3 1065 DGATCGPgSYCLKHNCTSYQD 1085 899**999********99875 PP == domain 4 score: -5.1 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106643_3 1089 ECDLKTCnYKGVCNNK-KHCHCLHG 1112 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.1 26.2 3.1e-20 2.5e-16 2 76 .] 865 936 .. 864 936 .. 0.95 2 ? -2.5 1.4 1.1 8.7e+03 33 52 .. 945 963 .. 939 981 .. 0.51 3 ? -0.2 8.6 0.2 1.6e+03 29 71 .. 1065 1106 .. 1043 1111 .. 0.76 Alignments for each domain: == domain 1 score: 60.1 bits; conditional E-value: 3.1e-20 Disintegrin 2 egEeCDcGsteeckkdkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 + EeCDcGs ++c +d+CC+ ++C+l+ g+ C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106643_3 865 QREECDCGSLKDCASDRCCE-TSCTLSLGSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 936 68******************.9*****************.7************6.556***************97 PP == domain 2 score: -2.5 bits; conditional E-value: 1.1 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106643_3 945 CSAvSVCIRGNCS--DRDMQC 963 3322333333332..222222 PP == domain 3 score: -0.2 bits; conditional E-value: 0.2 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106643_3 1065 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 1106 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 458 (0.0280878); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.70 # Mc/sec: 5288.45 // Query: T248725_1 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 8478.05 // Query: T248725_2 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 8217.18 // Query: T248725_3 [L=1867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 8217.18 // Query: T155892_1 [L=3317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.71 # Mc/sec: 13365.31 // Query: T155892_2 [L=3317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.37s 00:00:01.77 Elapsed: 00:00:00.78 # Mc/sec: 12165.86 // Query: T155892_3 [L=3316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:00.81 # Mc/sec: 11711.74 // Query: T070828_1 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 4508.46 // Query: T070828_2 [L=850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 4266.15 // Query: T070828_3 [L=850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 3986.40 // Query: T138126_1 [L=8135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1399 (0.0857966); expected 326.1 (0.02) Passed bias filter: 371 (0.0227524); expected 326.1 (0.02) Passed Vit filter: 126 (0.00772722); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.80u 0.52s 00:00:05.32 Elapsed: 00:00:01.17 # Mc/sec: 19891.33 // Query: T138126_2 [L=8135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1291 (0.0791733); expected 326.1 (0.02) Passed bias filter: 374 (0.0229363); expected 326.1 (0.02) Passed Vit filter: 119 (0.00729793); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.67u 0.55s 00:00:05.22 Elapsed: 00:00:01.12 # Mc/sec: 20595.44 // Query: T138126_3 [L=8135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1176 (0.0721207); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.92u 0.51s 00:00:04.43 Elapsed: 00:00:01.06 # Mc/sec: 21955.52 // Query: T157202_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 4148.20 // Query: T157202_2 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 4455.48 // Query: T157202_3 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 3880.58 // Query: T212589_1 [L=4287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 441 (0.0270453); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.44s 00:00:02.05 Elapsed: 00:00:00.76 # Mc/sec: 16137.34 // Query: T212589_2 [L=4286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.41s 00:00:02.14 Elapsed: 00:00:00.81 # Mc/sec: 15137.68 // Query: T212589_3 [L=4286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.34s 00:00:01.83 Elapsed: 00:00:00.87 # Mc/sec: 14093.70 // Query: T259092_1 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.63 # Mc/sec: 3260.44 // Query: T259092_2 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 3313.03 // Query: T259092_3 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 3107.90 // Query: T322048_1 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-26 89.8 80.0 1.9e-14 53.4 12.6 20.5 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.2 0.81 1.3e+04 23 30 .. 193 200 .. 173 202 .. 0.65 2 ? -2.2 0.2 0.28 4.6e+03 16 46 .. 486 516 .. 478 518 .. 0.82 3 ? -1.2 0.1 0.14 2.2e+03 38 47 .. 783 792 .. 782 793 .. 0.75 4 ? 0.5 0.0 0.04 6.5e+02 7 34 .. 795 821 .. 793 823 .. 0.88 5 ! 31.1 5.2 1.1e-11 1.8e-07 3 49 .. 823 868 .. 821 869 .. 0.96 6 ! 13.3 6.4 4.1e-06 0.067 24 47 .. 864 887 .. 863 891 .. 0.93 7 ? -1.1 3.9 0.13 2.1e+03 34 49 .. 895 910 .. 889 930 .. 0.88 8 ? -14.1 23.7 1 1.6e+04 8 31 .. 933 993 .. 911 1014 .. 0.57 9 ? 1.0 8.0 0.028 4.5e+02 6 46 .. 999 1031 .. 995 1034 .. 0.54 10 ! 33.6 11.6 1.9e-12 3.1e-08 2 50 .] 1020 1068 .. 1019 1068 .. 0.89 11 ! 9.0 4.6 9.2e-05 1.5 29 50 .] 1068 1089 .. 1066 1089 .. 0.93 12 ! 18.3 2.4 1.1e-07 0.0018 17 50 .] 1089 1122 .. 1089 1122 .. 0.95 13 ! 53.4 12.6 1.2e-18 1.9e-14 1 50 [] 1127 1174 .. 1127 1174 .. 0.99 14 ? 1.2 9.3 0.024 3.9e+02 2 27 .. 1238 1263 .. 1237 1289 .. 0.69 15 ! 5.3 19.0 0.0013 20 13 46 .. 1301 1348 .. 1264 1351 .. 0.67 16 ? -1.6 11.1 0.19 3.1e+03 9 27 .. 1354 1371 .. 1353 1404 .. 0.69 17 ? -2.3 2.7 0.29 4.8e+03 7 22 .. 1405 1419 .. 1403 1432 .. 0.59 18 ! 16.3 16.4 4.6e-07 0.0075 1 38 [. 1433 1514 .. 1433 1523 .. 0.96 19 ! 2.9 0.2 0.0073 1.2e+02 2 22 .. 1511 1530 .. 1510 1534 .. 0.86 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.81 DUF4705 23 srpsaqLp 30 rp++ Lp T322048_1 193 TRPPSLLP 200 46666666 PP == domain 2 score: -2.2 bits; conditional E-value: 0.28 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322048_1 486 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 516 5677788888888889999898888999888 PP == domain 3 score: -1.2 bits; conditional E-value: 0.14 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322048_1 783 LPPGSLSRPR 792 5888888885 PP == domain 4 score: 0.5 bits; conditional E-value: 0.04 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322048_1 795 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 821 568889.99***********99999877 PP == domain 5 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322048_1 823 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 868 689*******.************************************ PP == domain 6 score: 13.3 bits; conditional E-value: 4.1e-06 DUF4705 24 rpsaqLpvAsaGpklppagLsrPs 47 rps++ +As+Gp lpp+gL rP+ T322048_1 864 RPSSCFLAASPGPALPPGGLCRPR 887 8**********************6 PP == domain 7 score: -1.1 bits; conditional E-value: 0.13 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322048_1 895 QGQLLPPGALCRPKSS 910 6888899999999886 PP == domain 8 score: -14.1 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322048_1 933 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 993 5777766666666666653333333333333333333223222111134555555555555 PP == domain 9 score: 1.0 bits; conditional E-value: 0.028 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+s +L +AsaGp + L+rP T322048_1 999 ASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 1031 5555.5555555555.......5555555555554555555 PP == domain 10 score: 33.6 bits; conditional E-value: 1.9e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322048_1 1020 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1068 9******9555.7765499***************************9976 PP == domain 11 score: 9.0 bits; conditional E-value: 9.2e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322048_1 1068 LRASSPGPALPPGCVSRPDSCL 1089 7799*****************9 PP == domain 12 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322048_1 1089 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1122 68899999************************87 PP == domain 13 score: 53.4 bits; conditional E-value: 1.2e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322048_1 1127 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1174 9*********************************************..97 PP == domain 14 score: 1.2 bits; conditional E-value: 0.024 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322048_1 1238 GRGWASsSWPLQ-THLQPPGVLSGPSS 1263 78999637****.88888888887776 PP == domain 15 score: 5.3 bits; conditional E-value: 0.0013 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322048_1 1301 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1348 25578889********************55555555555555555555 PP == domain 16 score: -1.6 bits; conditional E-value: 0.19 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322048_1 1354 RPLQ-AQLQPPGGLCRPKS 1371 9***.99999999888865 PP == domain 17 score: -2.3 bits; conditional E-value: 0.29 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322048_1 1405 SSQPLQ-AQLLLPQWP 1419 679***.666555433 PP == domain 18 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpkl 38 PgpA +++pLqa p +l+ ++rps++LpvAs Gp T322048_1 1433 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAH 1514 9*******************************************************************************87 PP == domain 19 score: 2.9 bits; conditional E-value: 0.0073 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T322048_1 1511 GPAHSSQRPFQ-APFFPSGSL 1530 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 6975.38 // Query: T322048_2 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-49 166.4 242.5 2.4e-18 65.9 10.8 20.3 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.9 1.1e-08 0.00018 27 48 .. 782 803 .. 770 803 .. 0.94 2 ! 4.5 3.1 0.0022 36 2 39 .. 811 848 .. 811 852 .. 0.86 3 ! 37.4 19.0 1.2e-13 1.9e-09 1 50 [] 863 921 .. 863 921 .. 0.96 4 ! 16.9 10.2 3.1e-07 0.005 16 49 .. 908 941 .. 907 943 .. 0.91 5 ! 4.6 3.1 0.0021 34 24 38 .. 950 964 .. 947 976 .. 0.68 6 ! 2.6 11.6 0.0086 1.4e+02 1 38 [. 960 994 .. 960 1009 .. 0.73 7 ? -1.3 19.7 0.15 2.4e+03 1 39 [. 985 1046 .. 985 1047 .. 0.84 8 ! 4.6 15.3 0.0021 34 1 39 [. 1041 1089 .. 1041 1094 .. 0.87 9 ! 5.7 2.2 0.00095 15 1 18 [. 1083 1099 .. 1083 1115 .. 0.75 10 ! 16.4 2.3 4.4e-07 0.0072 1 26 [. 1116 1140 .. 1116 1142 .. 0.95 11 ! 17.5 5.8 2e-07 0.0033 1 30 [. 1149 1188 .. 1149 1190 .. 0.93 12 ! 14.4 10.8 1.8e-06 0.03 18 50 .] 1243 1275 .. 1228 1275 .. 0.87 13 ! 23.1 5.9 3.4e-09 5.6e-05 17 50 .] 1275 1308 .. 1274 1308 .. 0.96 14 ! 65.9 10.8 1.5e-22 2.4e-18 1 50 [] 1313 1362 .. 1313 1362 .. 0.99 15 ! 12.0 1.2 1e-05 0.17 25 44 .. 1358 1377 .. 1358 1378 .. 0.95 16 ! 16.3 7.3 4.8e-07 0.0078 20 49 .. 1385 1414 .. 1383 1416 .. 0.90 17 ? 0.2 1.7 0.051 8.2e+02 19 46 .. 1425 1456 .. 1423 1459 .. 0.88 18 ? 1.0 3.3 0.028 4.6e+02 4 29 .. 1477 1501 .. 1475 1501 .. 0.88 19 ! 18.6 6.9 9.2e-08 0.0015 2 35 .. 1500 1532 .. 1499 1539 .. 0.92 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322048_2 782 SYLPAASPGPELSPVGLHRPSS 803 67******************98 PP == domain 2 score: 4.5 bits; conditional E-value: 0.0022 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322048_2 811 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 848 67789999888.899********************9854 PP == domain 3 score: 37.4 bits; conditional E-value: 1.2e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322048_2 863 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 921 9*****************99997888999****************************98 PP == domain 4 score: 16.9 bits; conditional E-value: 3.1e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps+ L +As+G k p ++LsrPss+ T322048_2 908 SRPQVGLPRPSSSLSAASPGAKVPRVSLSRPSSS 941 56899**************************975 PP == domain 5 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 24 rpsaqLpvAsaGpkl 38 +ps++L +A++Gp + T322048_2 950 QPSSCLWAAFPGPAF 964 678888888888865 PP == domain 6 score: 2.6 bits; conditional E-value: 0.0086 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322048_2 960 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 994 9***********..666665.88888999999888876 PP == domain 7 score: -1.3 bits; conditional E-value: 0.15 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322048_2 985 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1046 799999999999999999999999999999988877788888887764489********997 PP == domain 8 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 1 PgpAPasrrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 Pgp +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322048_2 1041 PGPVFPFRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1089 7888889**************8888777549**************9854 PP == domain 9 score: 5.7 bits; conditional E-value: 0.00095 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322048_2 1083 PGPTPASQQPLW-TQCLP 1099 9**********9.77766 PP == domain 10 score: 16.4 bits; conditional E-value: 4.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322048_2 1116 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1140 9***********.9***********7 PP == domain 11 score: 17.5 bits; conditional E-value: 2e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLp 30 P+pA+asrrpLqa pas+q s l + s+++ T322048_2 1149 PRPAWASRRPLQAqvvlksaspgPASQQVSKLFWLSSCPA 1188 99**************************999999999985 PP == domain 12 score: 14.4 bits; conditional E-value: 1.8e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322048_2 1243 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1275 899***************************987 PP == domain 13 score: 23.1 bits; conditional E-value: 3.4e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322048_2 1275 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1308 899*****************************87 PP == domain 14 score: 65.9 bits; conditional E-value: 1.5e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322048_2 1313 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1362 9***********************************************98 PP == domain 15 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322048_2 1358 PSSSLPAASAGLSRPQVGLE 1377 99****************96 PP == domain 16 score: 16.3 bits; conditional E-value: 4.8e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322048_2 1385 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1414 67888**********************975 PP == domain 17 score: 0.2 bits; conditional E-value: 0.051 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322048_2 1425 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1456 67888899999999***99999999******9 PP == domain 18 score: 1.0 bits; conditional E-value: 0.028 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322048_2 1477 RPASSR-LTAPSPVQSSCLSATSAGP 1501 599999.*99999*******999976 PP == domain 19 score: 18.6 bits; conditional E-value: 9.2e-08 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322048_2 1500 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1532 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 8178.03 // Query: T322048_3 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-06 27.9 220.3 0.003 17.6 6.0 20.7 18 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.5 0.4 6.6e+03 7 16 .. 139 147 .. 129 165 .. 0.63 2 ! 8.1 1.0 0.00017 2.8 4 24 .. 781 801 .. 780 809 .. 0.88 3 ? -0.4 2.7 0.075 1.2e+03 1 25 [. 831 854 .. 831 854 .. 0.75 4 ? -1.0 0.3 0.12 1.9e+03 41 49 .. 870 878 .. 863 879 .. 0.82 5 ? -1.7 1.2 0.2 3.2e+03 7 15 .. 879 886 .. 873 892 .. 0.76 6 ! 14.7 1.3 1.5e-06 0.024 1 14 [. 894 906 .. 894 913 .. 0.90 7 ! 3.3 18.3 0.0052 85 1 50 [] 915 980 .. 915 980 .. 0.88 8 ? -8.6 19.2 1 1.6e+04 3 31 .. 951 1026 .. 949 1029 .. 0.62 9 ! 2.4 10.0 0.0099 1.6e+02 6 49 .. 1035 1077 .. 1032 1078 .. 0.91 10 ? -5.0 23.3 1 1.6e+04 13 42 .. 1084 1145 .. 1057 1164 .. 0.66 11 ? 2.1 1.1 0.013 2.1e+02 21 35 .. 1180 1194 .. 1167 1201 .. 0.84 12 ! 5.7 7.8 0.00094 15 16 43 .. 1251 1279 .. 1231 1286 .. 0.74 13 ! 17.6 6.0 1.8e-07 0.003 1 26 [. 1302 1326 .. 1302 1328 .. 0.96 14 ! 12.1 0.5 9.3e-06 0.15 2 15 .. 1336 1348 .. 1336 1355 .. 0.82 15 ! 14.8 0.7 1.4e-06 0.022 1 13 [. 1356 1368 .. 1356 1386 .. 0.87 16 ! 6.7 12.2 0.00047 7.6 1 46 [. 1388 1434 .. 1388 1436 .. 0.79 17 ! 2.7 0.7 0.0082 1.3e+02 29 50 .] 1438 1460 .. 1438 1460 .. 0.86 18 ! 16.5 16.9 4.1e-07 0.0066 2 39 .. 1466 1525 .. 1465 1532 .. 0.90 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.4 DUF4705 7 srrpLqapas 16 ++r+L+ p T322048_3 139 GQRRLH-PEN 147 577777.554 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322048_3 781 APTSRQPLQAQNFLQSASTDQ 801 9********999999987655 PP == domain 3 score: -0.4 bits; conditional E-value: 0.075 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322048_3 831 TGTAPSLQWPL*tQ---LLPPSLLSRP 854 799*******9744...6776666665 PP == domain 4 score: -1.0 bits; conditional E-value: 0.12 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322048_3 870 GSLSRPSSS 878 589999997 PP == domain 5 score: -1.7 bits; conditional E-value: 0.2 DUF4705 7 srrpLqapa 15 srrpLq ++ T322048_3 879 SRRPLQ-AQ 886 89****.65 PP == domain 6 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322048_3 894 PGPAPASRRPLQ-A 906 9***********.5 PP == domain 7 score: 3.3 bits; conditional E-value: 0.0052 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322048_3 915 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 980 9***********999**********97777666666778889************9999...88899998 PP == domain 8 score: -8.6 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322048_3 951 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1026 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 9 score: 2.4 bits; conditional E-value: 0.0099 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322048_3 1035 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1077 59*****.************9...679999998899*********97 PP == domain 10 score: -5.0 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322048_3 1084 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1145 36666666666666666666666666666665567779********************5543 PP == domain 11 score: 2.1 bits; conditional E-value: 0.013 DUF4705 21 glsrpsaqLpvAsaG 35 ++ ++aqLp A+a T322048_3 1180 FFGLAPAQLPTAFAA 1194 599**********85 PP == domain 12 score: 5.7 bits; conditional E-value: 0.00094 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322048_3 1251 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1279 3356889***************9887776 PP == domain 13 score: 17.6 bits; conditional E-value: 1.8e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322048_3 1302 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1326 9***********.***********96 PP == domain 14 score: 12.1 bits; conditional E-value: 9.3e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322048_3 1336 GPAWASRQPLQA-Q 1348 9**********4.4 PP == domain 15 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322048_3 1356 PGPAPASRRPLQA 1368 9***********7 PP == domain 16 score: 6.7 bits; conditional E-value: 0.00047 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322048_3 1388 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1434 9***********999*****99888765.4566666544777778777 PP == domain 17 score: 2.7 bits; conditional E-value: 0.0082 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322048_3 1438 LLVASSGPELdLQSAFAGPASCL 1460 789*******8677888999998 PP == domain 18 score: 16.5 bits; conditional E-value: 4.1e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322048_3 1466 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1525 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 7079.49 // Query: T268137_1 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-22 80.3 0.0 1.9e-22 79.8 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 8.3e-11 42.1 0.0 1.7e-10 41.2 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.8 0.0 2.3e-26 1.9e-22 1 222 [] 26 198 .. 26 198 .. 0.94 Alignments for each domain: == domain 1 score: 79.8 bits; conditional E-value: 2.3e-26 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yR++ d++++n+ ++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T268137_1 26 VPKPGTKDYRTV----QDLRLVNQTTVT---------LHPTVPNPYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 100 69*********7....7***********.........88888888888555............45788******************************98 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinp 200 g+ +++y++++lpqG+++ P++f ++ + l+++ + g++ll+Y+D +l+ +++ + + +a+ ++l+++++k+++ T268137_1 101 -------------------GSGVTTQYTWTRLPQGFKNYPTIFGEVLARDLQKFPAKDLGCVLLQYVDNLLLGHSTADGYAKGTDALLRHLEDCEYKMSK 181 ...................7788***********************999999999998****************************************** PP GG-EEE.....ESSEEETTEEE CS RVT_1 201 eKtklvlfsgkseevkyLGvtl 222 +K +++ +++v+yLG+t+ T268137_1 182 KKAQIC-----RQQVRYLGFTI 198 ******.....9********97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.2 0.0 2e-14 1.7e-10 5 70 .. 447 512 .. 444 518 .. 0.89 Alignments for each domain: == domain 1 score: 41.2 bits; conditional E-value: 2e-14 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES- CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDS 70 +Y+DGs++ +ge++ag+ v+ + + ++pl++ +++++ EL+A++ aL+ + ++++vniytDS T268137_1 447 ELYVDGSSFISpRGERCAGYaVVTLD-DVIEAKPLPQGTSAQKEELIALTRALElS--EGKTVNIYTDS 512 68********978899****777666.34777999*******************55..9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 7742.70 // Query: T268137_2 [L=1677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 8131.55 // Query: T268137_3 [L=1677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-07 30.3 0.2 7.6e-07 29.2 0.2 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.2 0.2 4.7e-11 7.6e-07 1 39 [] 653 691 .. 653 691 .. 0.98 Alignments for each domain: == domain 1 score: 29.2 bits; conditional E-value: 4.7e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++++ ++ +++++++++C++C+ T268137_3 653 HETTHLGQESLEKLFSQYFYISHLPALAKTAAQQCVTCR 691 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8567.16 // Query: T002411_1 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1991 (0.122102); expected 326.1 (0.02) Passed bias filter: 398 (0.0244082); expected 326.1 (0.02) Passed Vit filter: 161 (0.00987367); expected 16.3 (0.001) Passed Fwd filter: 70 (0.0042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.42s 00:00:01.89 Elapsed: 00:00:00.85 # Mc/sec: 1770.35 // Query: T002411_2 [L=525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1211 (0.0742671); expected 326.1 (0.02) Passed bias filter: 317 (0.0194407); expected 326.1 (0.02) Passed Vit filter: 83 (0.00509015); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 2086.02 // Query: T002411_3 [L=525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2361 (0.144793); expected 326.1 (0.02) Passed bias filter: 378 (0.0231817); expected 326.1 (0.02) Passed Vit filter: 105 (0.00643935); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.41s 00:00:02.17 Elapsed: 00:00:00.70 # Mc/sec: 2145.62 // Query: T161809_1 [L=4148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-18 64.3 0.1 1.5e-17 63.8 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 2.6e-08 33.2 0.8 5.8e-08 32.0 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.8 0.1 1.8e-21 1.5e-17 133 222 .] 1378 1493 .. 1375 1493 .. 0.93 Alignments for each domain: == domain 1 score: 63.8 bits; conditional E-value: 1.8e-21 -ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.............. CS RVT_1 133 pqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf............ 208 +qG++lSPllfn+++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+k+n +K++++l+ T161809_1 1378 RQGCPLSPLLFNIVTKVLARAIRQEK*ikgiqvgkEEVKLSLFADDMIVYLENpIVSAQNLLKLISNFSKVSGYKMNVQKSQAFLYtingqtesqims 1475 8***********************99***************************6677***************************99**9999988876 PP .......ESSEEETTEEE CS RVT_1 209 ..sg..kseevkyLGvtl 222 ++ ++++kyLG++l T161809_1 1476 elTFtiVTKRIKYLGIQL 1493 552278*********986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 0.8 7.2e-12 5.8e-08 1 19 [] 1959 1977 .. 1959 1977 .. 0.98 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 7.2e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T161809_1 1959 SFAGTWMKLETIILSKLSQ 1977 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.79 # Mc/sec: 15021.17 // Query: T161809_2 [L=4148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.84 # Mc/sec: 14127.05 // Query: T161809_3 [L=4147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-19 69.8 0.2 3.4e-19 69.1 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.1 0.2 2.1e-23 3.4e-19 14 131 .. 1255 1376 .. 1251 1381 .. 0.96 Alignments for each domain: == domain 1 score: 69.1 bits; conditional E-value: 2.1e-23 ....-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET......... CS RVT_1 14 llsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliks 107 ll++d k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++ + + k+++++++D +k Fd+++ ++ l++l++++++ + +++i++ T161809_3 1255 LLNIDAKILNKILANRIQQHIKKLIHHDQVGFNPGMQGWFNIsksiNVIHHISRTNDKNHMIISIDTEKNFDKIQQPFTLKTLNKLGIDGTYLKIIRA 1352 799******************************************9999***99******************************************** PP ................TEEEEESB CS RVT_1 108 flstrsfsvrvngeesegryekkg 131 ++ ++++s+ +ng++ e+++ k+g T161809_3 1353 VYDKPTASIILNGQKLETFPLKTG 1376 **************9899988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.59 # Mc/sec: 20108.24 // Query: T065987_1 [L=2300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-17 62.7 0.0 6.8e-17 61.9 0.0 1.3 1 RNase_H RNase H 1.5e-05 25.0 0.0 2.6e-05 24.3 0.0 1.4 1 rve Integrase core domain ------ inclusion threshold ------ 0.024 14.0 0.1 0.072 12.5 0.1 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.9 0.0 1.3e-20 6.8e-17 8 135 .. 1420 1550 .. 1416 1556 .. 0.87 Alignments for each domain: == domain 1 score: 61.9 bits; conditional E-value: 1.3e-20 EEEEEECTTTEEEEEE.EECTT..E.EEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT. CS RNase_H 8 tDGsclgnsgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn. 100 tDGs++ +ge +ag+ ++++ ++p+++ +++++a ++ +++aL +++k+niytDSkY++ ++ h+++++++ ts+++p+ T065987_1 1420 TDGSSSLSNGEHRAGYaAVNHD--TiIEAQPVPPGTSAQKAKIIDLTQALMlG--QGKKLNIYTDSKYAFLVVHA--HTAIRKERGLlTSKHSPIEHg 1511 9***************555766..424457888******************55..99**************8888..6666666665588888**999 PP HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHH CS RNase_H 101 kelaellkelakkkkvqlkhvkgHaGd....pkgNemaD 135 e+ +llk++ +k++ + h++gH+ d ++gN aD T065987_1 1512 PEILQLLKAIHLPKAIAIIHCRGHQRDltpiAQGNGKAD 1550 ************************999899989**9999 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 4.8e-09 2.6e-05 55 116 .. 1725 1785 .. 1722 1785 .. 0.89 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 4.8e-09 rve 55 leravarfggvepervlsDng.seytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 l +++ ++g p+ + sDng s ++s+ ++ +++ lgi+ ++ ++rpq+ GkvEr n+tlk T065987_1 1725 LLKEIIPQFGL-PQGLQSDNG*S-FISQITQGVAKALGIKYYLHSAWRPQSSGKVERVNQTLK 1785 55566666666.9*********9.999999*******************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 1.3e-05 0.072 126 221 .. 1073 1160 .. 1038 1161 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.3e-05 EEEESB--ST-TTHHHHHH..HHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 126 ryekkglpqGsvlSPllfn..lfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 +y++++lpqG+ SP f l + lr+++ ++ +l+Y DD+ + s + + + q+ ++++ ++l++ g+k++++K +++l + v+yLG+ T065987_1 1073 QYTWTVLPQGFRDSPHFFA*aLERD--LRDFKL--ENGGILQYGDDL-VCSPT*EVSDQNTIKTL-NFLADRGYKVSKKKAQITL-----QWVHYLGY 1159 699************9984424333..344443..3579*******7.57899999888888765.8*****************5.....9******9 PP E CS RVT_1 221 t 221 T065987_1 1160 V 1160 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 11543.70 // Query: T065987_2 [L=2300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00027 20.4 0.0 0.00043 19.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 2.6e-08 0.00043 152 210 .. 621 679 .. 604 680 .. 0.91 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 2.6e-08 Gag_p30 152 rrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 + yt p +pe k +a fi qs++dir+klq+l+ +++ ++l+ a vyn r+ T065987_2 621 KIYTNLVPSSPEGKLLMAQRFISQSTPDIRRKLQKLHMGPQTNQNQLLGTAFMVYNNRD 679 679**********************************99999999**********9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 12185.02 // Query: T065987_3 [L=2300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-16 58.5 0.0 9.4e-16 57.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.092 12.9 0.0 0.85 9.8 0.0 2.2 2 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.8 0.0 1.2e-19 9.4e-16 3 155 .. 472 623 .. 470 626 .. 0.85 Alignments for each domain: == domain 1 score: 57.8 bits; conditional E-value: 1.2e-19 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne...vdeafpltrpdw.dyet 98 pfs d+ + k++ s+sed k++ +++ l+ + +w d q l t t+ e++r++ a ++v + tq ++ ++ p t p d +t T065987_3 472 VPFSMIDIQQCKEKLGSYSEDSGKFADGFQTLTLAFDLSWRDVQFTLATCCTSSEKERIFEAALREVD---ELFTQNRKGshpGPATVPTTHP-N*DQDT 567 59********************************************************8877777775...5566655440004455565555.25567* PP Gag_p30 99 aegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrryt 155 ++gr++ + ++l g+r + n kv++++qg+ee+pa+f rl+ea+++y T065987_3 568 PAGRNNWAKFLEAL-GGMRKGITKAVNYDKVRQITQGREENPAVFYGRLREAFKKYI 623 *****999998875.899999999******************************995 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.0 0.094 7.6e+02 3 28 .. 807 832 .. 805 842 .. 0.82 2 ? 9.8 0.0 0.0001 0.85 65 98 .. 863 896 .. 849 899 .. 0.80 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.094 SSSEEEEEETTEEEEEEE-TTBSSEE CS RVP 3 qrPllkvkiggkyieallDtGAdatv 28 ++P +++ i ++i++l Dt + +v T065987_3 807 EEPWVTLDIMATQIQFLCDTKVNYSV 832 689*****************766665 PP == domain 2 score: 9.8 bits; conditional E-value: 0.0001 EETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 65 llieekfrgevsplilpelpvnllGrdlLqklgv 98 +++ek+ + ++l++p++p++l+ rd++ k+ T065987_3 863 VCQFEKQIFQQEFLVVPSCPIPLWERDIMVKIVT 896 55677888888******************99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.49 # Mc/sec: 13428.39 // Query: T276424_1 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.47 # Mc/sec: 7097.29 // Query: T276424_2 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 6801.77 // Query: T276424_3 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6801.77 // Query: T221440_1 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0047 17.1 0.1 0.01 16.0 0.1 1.5 1 Forkhead Forkhead domain ------ inclusion threshold ------ 0.062 13.3 0.0 0.11 12.5 0.0 1.2 1 CBM_26 C-terminal carbohydrate-binding module Domain annotation for each model (and alignments): >> Forkhead Forkhead domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.1 1.3e-06 0.01 36 61 .. 1394 1419 .. 1374 1422 .. 0.70 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.3e-06 HHHHC.-CCHHHHHHHHHHHHC--EE CS Forkhead 36 pyyrtadkgWqnsirhnLslnkcFvk 61 +yy + +W nsirh+Lslnkc k T221440_1 1394 QYYLIVQCKWVNSIRHKLSLNKCVLK 1419 455566779*************9655 PP >> CBM_26 C-terminal carbohydrate-binding module # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 1.3e-05 0.11 38 71 .. 338 371 .. 326 379 .. 0.85 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.3e-05 EEEEEEESSTT--EEEEEEEETTS-EEEEEEE-- CS CBM_26 38 yqvdvrfsdpsvkelkatiWylnGrredlklekp 71 ++ vrf+ svkel +t+W+ Grr + k ++ T221440_1 338 KVRRVRFEFLSVKELTNTLWWRAGRRRHCKAKRE 371 556799********************99987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.51 # Mc/sec: 16301.12 // Query: T221440_2 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.51 # Mc/sec: 16301.12 // Query: T221440_3 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.53 # Mc/sec: 15685.98 // Query: T113153_1 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 2114.53 // Query: T113153_2 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 2069.54 // Query: T113153_3 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.47 # Mc/sec: 2063.45 // Query: T334440_1 [L=1952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.3 1.9 0.00034 20.0 1.9 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 1.9 2.1e-08 0.00034 3 18 .. 1919 1934 .. 1919 1934 .. 0.94 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 2.1e-08 DUF1725 3 agKWMELEnIILSEis 18 a++WM LE+I+LSE s T334440_1 1919 ATTWMNLEDIMLSEMS 1934 89************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.52 # Mc/sec: 10739.12 // Query: T334440_2 [L=1952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 10536.49 // Query: T334440_3 [L=1951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 98 (0.00601006); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 10336.07 // Query: T024481_1 [L=877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4919.51 // Query: T024481_2 [L=877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 4824.90 // Query: T024481_3 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4819.40 // Query: T138393_1 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 4431.59 // Query: T138393_2 [L=820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 4344.22 // Query: T138393_3 [L=820] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (820 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 4265.24 // Query: T317089_1 [L=4608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1410 (0.0864712); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.80u 0.53s 00:00:05.33 Elapsed: 00:00:01.02 # Mc/sec: 12924.22 // Query: T317089_2 [L=4608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.9 6.4 0.097 12.5 6.4 2.4 1 EPF Epidermal patterning factor proteins Domain annotation for each model (and alignments): >> EPF Epidermal patterning factor proteins # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 6.4 6e-06 0.097 6 49 .. 1830 1872 .. 1828 1875 .. 0.76 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 6e-06 EPF 6 pPsCenkCgsCsPCkavqVkaaksssceeae.yypeaWkCkCgnk 49 PsCe+ C PC+ + ++ + +++ + ++ + C+C ++ T317089_2 1830 TPSCEHTCVHTHPCEHTYTHT--HTHTHAHTyTHAHTYTCTCTQR 1872 7*****************933..33344444257778*****876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1435 (0.0880044); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 144 (0.00883111); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.68u 0.49s 00:00:04.17 Elapsed: 00:00:00.91 # Mc/sec: 14486.49 // Query: T317089_3 [L=4607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1370 (0.0840182); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 142 (0.00870845); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.65u 0.52s 00:00:04.17 Elapsed: 00:00:00.90 # Mc/sec: 14644.27 // Query: T183291_1 [L=5690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.63 # Mc/sec: 25838.29 // Query: T183291_2 [L=5690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.008 15.7 0.8 0.019 14.5 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.8 1.2e-06 0.019 6 18 .. 5660 5672 .. 5658 5673 .. 0.90 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.2e-06 DUF1725 6 WMELEnIILSEis 18 WM+LE IILS+ + T183291_2 5660 WMKLEAIILSKLT 5672 **********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.61 # Mc/sec: 26685.45 // Query: T183291_3 [L=5690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.32s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 22298.80 // Query: T222202_1 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.66 # Mc/sec: 9150.32 // Query: T222202_2 [L=2111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.72 # Mc/sec: 8387.79 // Query: T222202_3 [L=2110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 9286.69 // Query: T353113_1 [L=1137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 5082.44 // Query: T353113_2 [L=1137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0032 16.9 0.3 0.0074 15.8 0.3 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.3 4.5e-07 0.0074 1 19 [] 501 519 .. 501 519 .. 0.96 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 4.5e-07 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+ +WM+L +IILS+ sQ T353113_2 501 SFVVTWMKLKTIILSKLSQ 519 7999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 4928.43 // Query: T353113_3 [L=1136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 6770.63 // Query: T293444_1 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 3428.59 // Query: T293444_2 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 3321.98 // Query: T293444_3 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 3709.54 // Query: T195956_1 [L=2518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.39s 00:00:01.67 Elapsed: 00:00:00.70 # Mc/sec: 10290.81 // Query: T195956_2 [L=2518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.51 # Mc/sec: 14124.65 // Query: T195956_3 [L=2518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 11255.58 // Query: T303074_1 [L=2074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 8599.07 // Query: T303074_2 [L=2074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.73 # Mc/sec: 8127.89 // Query: T303074_3 [L=2074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.40s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 7911.15 // Query: T235925_1 [L=1458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.68 # Mc/sec: 6133.96 // Query: T235925_2 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 7186.60 // Query: T235925_3 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.1 0.1 0.11 12.1 0.1 1.9 2 zf-MIZ MIZ/SP-RING zinc finger Domain annotation for each model (and alignments): >> zf-MIZ MIZ/SP-RING zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 6.9e-06 0.11 14 27 .. 471 484 .. 463 487 .. 0.86 2 ? -3.9 0.5 0.68 1.1e+04 21 26 .. 1252 1257 .. 1251 1257 .. 0.93 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 6.9e-06 SEEEETT--SS--E CS zf-MIZ 14 iPvrgekCkHlqCf 27 P rg+ C H+qCf T235925_3 471 SPKRGVGCAHVQCF 484 699**********9 PP == domain 2 score: -3.9 bits; conditional E-value: 0.68 --SS-- CS zf-MIZ 21 CkHlqC 26 C+Hl C T235925_3 1252 CRHLGC 1257 *****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 6833.16 // Query: T084008_1 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.2 0.0 0.016 14.6 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.0 9.5e-07 0.016 3 59 .. 303 359 .. 301 361 .. 0.93 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 9.5e-07 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerq 59 pfs sdl + k + fs dp + +++ + t + tw d + ll+ l+ e++ T084008_1 303 VPFSLSDLKQIKVDLGKFSFDPDRYIDVLQGLRQTFNLTWRDVKLLLDETLAFSEKN 359 69*********************************************9888877775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 9814.49 // Query: T084008_2 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.70 # Mc/sec: 8692.84 // Query: T084008_3 [L=2126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-44 151.5 4.0 3.1e-44 151.5 4.0 1.6 2 TLV_coat ENV polyprotein (coat polyprotein) 4e-18 65.9 0.0 7.7e-18 64.9 0.0 1.5 1 RNase_H RNase H 4.1e-16 59.0 0.4 1.1e-15 57.6 0.0 1.9 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 4.4e-16 58.9 0.0 7.9e-16 58.1 0.0 1.4 1 Gag_p30 Gag P30 core shell protein 7.5e-09 35.7 0.0 1.6e-08 34.6 0.0 1.6 1 RVP Retroviral aspartyl protease 1.3e-05 25.3 0.0 2.6e-05 24.3 0.0 1.5 1 rve Integrase core domain Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.8 0.76 2.1e+03 319 354 .. 1531 1565 .. 1509 1579 .. 0.75 2 ! 151.5 4.0 1.1e-47 3.1e-44 331 560 .. 1641 1858 .. 1609 1859 .. 0.87 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.76 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XX CS TLV_coat 319 alcnktektskgseylvapngtvfacntgltpclst 354 +lc ktek+++ + ++ +++t ++ + +tpc+s T084008_3 1531 FLC-KTEKAQEVVKVVCNGTHTPCMTIDSWTPCSSA 1565 334.47778888888888888888888888888764 PP == domain 2 score: 151.5 bits; conditional E-value: 1.1e-47 XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHH CS TLV_coat 331 seylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqf 426 ++ ++++g +f+c+t l++++t+ C l+ l P+i++++g+ + + + + + R a++l++lL GLg+a+++gt ++ l s+ + T084008_3 1641 NQFCLPSHGIFFLCGTSTY----ICLPTNWTGTCTLIFLSPNIDIAPGNqTLSVSLKAQVCQHR---AIQLIPLLIGLGMATATGTRIASLsTSLSYY 1731 344568889999**99865....889***********************788888888999999...************************9****** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHH.HHHHHHHHHHHHHHHHHHH-XXXX.XXXXX CS TLV_coat 427 kkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgiv.rdsiakLqerleqrqrllednqlwfegllg 523 + L+ + +q+ ++sI l+ ++ sla v lQN RGLDlL++e+GGlC+ L EeCCFy ++s iv ++Lqe+ ++ ++ l ++ + l T084008_3 1732 HTLSKDFPDSLQEKTKSILTLQSQIGSLAAVTLQNHRGLDLLTAEKGGLCTFLGEECCFYTNQSEIV*DA-TRHLQEKASEIRQCLSNSY---TNLWS 1825 *****************************************************************98854.589****988777665443...34555 PP XXXXXXXXX....XXXXXXXX.XXXXXXXXXXXXXXXX CS TLV_coat 524 lspwlttllstilgpLlllLL.iLllGPcilnrLvqli 560 wl+++l p ++++L +L++GP+i+n Lv++i T084008_3 1826 WATWLLPFL----VP-MTAIL*LLTFGPYIFNLLVKFI 1858 567888888....66.46788889*************9 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.9 0.0 2.8e-21 7.7e-18 3 142 .. 1227 1369 .. 1225 1370 .. 0.89 Alignments for each domain: == domain 1 score: 64.9 bits; conditional E-value: 2.8e-21 SEEEEEEEEEECTTTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 3 avvvYtDGsclgnsgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 ++++Yt Gs++ ++g ++ag+ +++ +++ s+pl++ ++ + aEL A++ aL+ +++++n+ytDSk+++ ++ + wk+ ++ ts ++p+ T084008_3 1227 DLNLYTNGSSFVENGIRRAGYpIVS-DVTVLESKPLPPGTSTQLAELVALTCALElG--KEKRINVYTDSKNAYLILHAHAAIWKE-GECLTSGGTPI 1320 5789*****************6665.65668889999******************55..899*************88888888866.555899999** PP TT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 k ke+ ell+++ k+k+v + h + H+ + ++ N++aD Ak aa T084008_3 1321 KYhKEIVELLHTVQKPKQVAVLHFQSHQKVeeekAERNHQADAEAKIAA 1369 *99************************9888999889******999776 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.6 0.0 4.2e-19 1.1e-15 2 206 .. 819 973 .. 818 980 .. 0.87 2 ? -3.2 0.0 1.7 4.6e+03 86 114 .. 1511 1537 .. 1505 1545 .. 0.71 3 ? -3.9 0.0 2.7 7.3e+03 139 156 .. 1847 1864 .. 1845 1870 .. 0.81 Alignments for each domain: == domain 1 score: 57.6 bits; conditional E-value: 4.2e-19 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +K++ +++R+ d+++++++++ L +v ++++ + + + +a++++ lDlk+aF+ +pl+ +++ l+af pt T084008_3 819 QKPN-SQWRLeQ-----DLRLISEAVIP-LYPV----VPNPYILLSQI----------------TEEAEWFTVLDLKDAFFCIPLHSDSQFLFAFEDPTD 891 5777.7777766.....77777777777.5554....44444444444................5789******************************65 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinp 200 + + ++++lpqG+ SP lf ++ + l ++++ ++ +l+ +DD+l++++ + ++q++ ++ ++l++ g+k+++ T084008_3 892 ----------------------HTSQLTWTVLPQGFGDSPHLFGQALAQDLGHFSS--PSTLVLQHVDDLLLATSLEASCQQATLDLLNFLANQGYKVSK 967 ......................4899*****************************9..79**************************************** PP GG-EEE CS RVT_1 201 eKtklv 206 +K +l+ T084008_3 968 SKAQLC 973 ***998 PP == domain 2 score: -3.2 bits; conditional E-value: 1.7 -GGGGGGG-EEET................ CS RVT_1 86 eellrkltafkvptklinliksflstrsf 114 ++ +++l+a + ++++n+i++fl ++++ T084008_3 1511 SRAFQYLFA--CVDTFTNWIEAFLCKTEK 1537 566667776..77899*******976664 PP == domain 3 score: -3.9 bits; conditional E-value: 2.7 HHHHHHHHHHHHHTT-T. CS RVT_1 139 SPllfnlfmnellrelrk 156 +P++fnl++ ++ +++ T084008_3 1847 GPYIFNLLVKFISSRIEA 1864 89******9999988876 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 0.0 2.9e-19 7.9e-16 110 210 .. 418 518 .. 403 519 .. 0.93 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 2.9e-19 Gag_p30 110 qlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkr 209 +l glr + p n + + +v+qgkee+p++fl++l ea r+yt p + e + + f++qsa+dir klq+l e++l+ l++ a v++ r T084008_3 418 TCVLEGLRRIRKMPMNYSIMSTVTQGKEENPTTFLKQLWEALRKYTALSPASFEGQLILKDKFVTQSAADIRGKLQKLALGLEQNLEALLNLATSVFYNR 517 56799*************************************************************************988899*************998 PP Gag_p30 210 e 210 + T084008_3 518 D 518 6 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.0 5.9e-12 1.6e-08 4 100 .. 635 726 .. 632 727 .. 0.92 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 5.9e-12 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P + + i+ + i +llDtG + +v+ + P + +++++qGi+g+ +++s+ ++ f++ +l++pe+p l+Grd+L k g+ + T084008_3 635 EPQVSLTIESQEIDFLLDTGVTFSVLI--SCPRR--LSPRSVTIQGILGQPvTRYFSHLLSCNWESLLFSH--AFLVMPESPPSLFGRDILAKAGAII 726 7999*********************96..57888..77999*********9899999999***********..*******************998765 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 9.6e-09 2.6e-05 3 55 .. 1496 1545 .. 1494 1549 .. 0.89 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 9.6e-09 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastviall 55 pge wq D+t+++ + + + yl++ +d+f+++i a+ +++e +a++v++++ T084008_3 1496 YPGEDWQLDFTHMP--KSRAFQYLFACVDTFTNWIEAFLCKTE-KAQEVVKVV 1545 699***********..55569**********************.888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 551 (0.0337912); expected 326.1 (0.02) Passed bias filter: 401 (0.0245922); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 8331.68 // Query: T324470_1 [L=5748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.3 0.1 0.00025 20.5 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.09 12.2 0.4 0.15 11.5 0.4 1.2 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.1 3.1e-08 0.00025 154 208 .. 558 613 .. 546 629 .. 0.83 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 3.1e-08 -T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 154 lrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf 208 ++ ++v+l+++aD ++++ ++ ++++ll+ ++++ k sg+kin +K++++l T324470_1 558 IQLGKEEVKLSLFADSMIVYLENpIVSAHNLLKLISNFSKVSGYKINTQKSQAFLH 613 3334489****************6667**************************975 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.4 1.9e-05 0.15 49 111 .. 712 779 .. 706 782 .. 0.78 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.9e-05 DUF4417 49 qferlwn.....sPekylaaLkqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn +++l + ++ ++++ Pdf ly+ a + +w y++r i ++ ++ ++ P++ T324470_1 712 TFNFIWNqkrahIAKTILSKKNKGRGIMLPDFKLYYKATVTKTAWYWYQNRYIDKWNRTETSEITPHI 779 6788888444422222333334449********************************99999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.93u 0.38s 00:00:02.31 Elapsed: 00:00:00.81 # Mc/sec: 20301.30 // Query: T324470_2 [L=5748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-26 92.7 2.1 3.2e-26 92.1 2.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 3.3e-08 32.8 0.8 6.6e-08 31.9 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.1 2.1 3.9e-30 3.2e-26 1 157 [. 384 549 .. 384 569 .. 0.92 Alignments for each domain: == domain 1 score: 92.1 bits; conditional E-value: 3.9e-30 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSB.B-GGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvp.leellr 90 ipK+g ++++Rpisl++++ k+lnk++a++++++++kl+ ++q+gf pg + + ++ + ++ + + + k+++++++D +k Fd+++ + ++ T324470_2 384 IPKPGrdttkKENFRPISLMNINAKILNKILANQIQQHIKKLMYHDQVGFIPGMQRWFNIhksiNIIHYIKRTNDKNHMIISIDAEKVFDKIQ*P-FMIK 482 899999999999*************************************************9965555555667777***************553.689* PP GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.. CS RVT_1 91 kltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkr 157 +l++++++ + +++i++++ ++++++ +ng++ e ++ k+ ++qG++lS llfn +++ l + +r++ T324470_2 483 TLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTSTRQGCPLSSLLFNTVLEVLAKAIRQE 549 *******************************99*******************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.8 8e-12 6.6e-08 1 19 [] 1108 1126 .. 1108 1126 .. 0.98 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 8e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ +Q T324470_2 1108 SFAGTWMKLETIILSKLTQ 1126 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.89u 0.35s 00:00:02.23 Elapsed: 00:00:00.97 # Mc/sec: 16952.63 // Query: T324470_3 [L=5748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 550 (0.0337299); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.37s 00:00:02.11 Elapsed: 00:00:00.61 # Mc/sec: 26957.46 // Query: T051400_1 [L=5802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.40s 00:00:02.19 Elapsed: 00:00:00.81 # Mc/sec: 20492.02 // Query: T051400_2 [L=5801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.32s 00:00:02.11 Elapsed: 00:00:00.88 # Mc/sec: 18858.72 // Query: T051400_3 [L=5801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.41s 00:00:02.13 Elapsed: 00:00:00.74 # Mc/sec: 22426.59 // Query: T195957_1 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.64 # Mc/sec: 9092.08 // Query: T195957_2 [L=2033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 490 (0.0300503); expected 326.1 (0.02) Passed bias filter: 288 (0.0176622); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.72 # Mc/sec: 8077.87 // Query: T195957_3 [L=2033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 8308.67 // Query: T076678_1 [L=8828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.42u 0.42s 00:00:02.84 Elapsed: 00:00:00.71 # Mc/sec: 35571.00 // Query: T076678_2 [L=8827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.38s 00:00:02.70 Elapsed: 00:00:00.89 # Mc/sec: 28373.65 // Query: T076678_3 [L=8827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.27u 0.39s 00:00:02.66 Elapsed: 00:00:00.79 # Mc/sec: 31965.25 // Query: T296174_1 [L=2785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.73 # Mc/sec: 10914.26 // Query: T296174_2 [L=2784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 11377.93 // Query: T296174_3 [L=2784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 11887.39 // Query: T164156_1 [L=2524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.75 # Mc/sec: 9627.65 // Query: T164156_2 [L=2523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.80 # Mc/sec: 9022.34 // Query: T164156_3 [L=2523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.72 # Mc/sec: 10024.83 // Query: T174786_1 [L=5698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.34s 00:00:02.16 Elapsed: 00:00:00.74 # Mc/sec: 22028.39 // Query: T174786_2 [L=5698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:00.71 # Mc/sec: 22959.17 // Query: T174786_3 [L=5698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.40s 00:00:02.25 Elapsed: 00:00:00.88 # Mc/sec: 18523.87 // Query: T004128_1 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1361 (0.0834662); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.61 # Mc/sec: 6467.35 // Query: T004128_2 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.78 # Mc/sec: 5054.13 // Query: T004128_3 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 6916.18 // Query: T099504_1 [L=1674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:00.71 # Mc/sec: 6745.11 // Query: T099504_2 [L=1674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 8707.33 // Query: T099504_3 [L=1673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 8863.28 // Query: T028855_1 [L=8347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.35s 00:00:02.04 Elapsed: 00:00:00.63 # Mc/sec: 37903.73 // Query: T028855_2 [L=8346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.36s 00:00:02.10 Elapsed: 00:00:00.65 # Mc/sec: 36733.06 // Query: T028855_3 [L=8346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.33s 00:00:02.06 Elapsed: 00:00:00.62 # Mc/sec: 38510.46 // Query: T256178_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5109.44 // Query: T256178_2 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 5207.88 // Query: T256178_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.46 # Mc/sec: 5547.52 // Query: T125652_1 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1972.15 // Query: T125652_2 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-05 25.5 0.0 2.3e-05 24.9 0.0 1.2 1 Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27 Domain annotation for each model (and alignments): >> Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 1.4e-09 2.3e-05 80 114 .. 66 111 .. 53 118 .. 0.79 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 1.4e-09 TSSS.........SE.EEE--S---.-.-EEEESEE-HHHHHHHHH CS Ribosomal_L27A 80 agli.........gv.Kvlgkgeltkk.lkvkaskfSkkAkekIea 114 + ++ g Kvlgkg+l+k +++ka++fSk+A+ekI+ T125652_2 66 TTVYcklfsllf*GCcKVLGKGKLPKHrVTMKAKFFSKRAEEKING 111 4444666677788788*********977****************74 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 1931.06 // Query: T125652_3 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45 # Mc/sec: 2053.44 // Query: T227541_1 [L=5717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.29s 00:00:01.55 Elapsed: 00:00:00.56 # Mc/sec: 29206.01 // Query: T227541_2 [L=5717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.34s 00:00:01.65 Elapsed: 00:00:00.56 # Mc/sec: 29206.01 // Query: T227541_3 [L=5716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.56 # Mc/sec: 28688.60 // Query: T178826_1 [L=5489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.57 # Mc/sec: 27074.30 // Query: T178826_2 [L=5489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.55 # Mc/sec: 28551.08 // Query: T178826_3 [L=5488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.26s 00:00:01.50 Elapsed: 00:00:00.55 # Mc/sec: 28545.88 // Query: T101435_1 [L=3896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.26s 00:00:01.29 Elapsed: 00:00:00.52 # Mc/sec: 21434.22 // Query: T101435_2 [L=3896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.54 # Mc/sec: 20640.36 // Query: T101435_3 [L=3896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.53 # Mc/sec: 21029.80 // Query: T280736_1 [L=6210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.30s 00:00:01.62 Elapsed: 00:00:00.56 # Mc/sec: 31167.99 // Query: T280736_2 [L=6210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.59 # Mc/sec: 30111.45 // Query: T280736_3 [L=6209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.28s 00:00:01.59 Elapsed: 00:00:00.55 # Mc/sec: 32296.17 // Query: T336891_1 [L=942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5284.12 // Query: T336891_2 [L=942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 5182.50 // Query: T336891_3 [L=942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 5084.72 // Query: T164162_1 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 15351.32 // Query: T164162_2 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 15067.04 // Query: T164162_3 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.52 # Mc/sec: 15646.54 // Query: T314396_1 [L=4280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.60 # Mc/sec: 20407.25 // Query: T314396_2 [L=4280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.35s 00:00:01.48 Elapsed: 00:00:00.64 # Mc/sec: 19131.80 // Query: T314396_3 [L=4280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.77 # Mc/sec: 15901.76 // Query: T251535_1 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.6 5.5 8.1 12 4.5 8.1 1.4 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 8.1 0.00077 12 280 315 .. 993 1030 .. 930 1080 .. 0.54 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.00077 DUF913 280 etkeeek................ssededvemedaeaetesesdeeeeseee 315 ++k+++k + + +++++++++++++ T251535_1 993 KKKKKKKkkrkkkrkkkrkkkkkE----------K----KKKKKKKKKKKKK 1030 111111111111111111111110..........1....1111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2868 (0.175886); expected 326.1 (0.02) Passed bias filter: 870 (0.0533546); expected 326.1 (0.02) Passed Vit filter: 596 (0.036551); expected 16.3 (0.001) Passed Fwd filter: 111 (0.00680731); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.95u 0.49s 00:00:03.44 Elapsed: 00:00:00.91 # Mc/sec: 4272.38 // Query: T251535_2 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 935 (0.0573409); expected 326.1 (0.02) Passed bias filter: 366 (0.0224457); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.72 # Mc/sec: 5399.82 // Query: T251535_3 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0018 17.7 56.1 0.0018 17.7 56.1 1.7 2 SDA1 SDA1 Domain annotation for each model (and alignments): >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.2 5.8 1 1.6e+04 320 336 .. 195 211 .. 191 219 .. 0.48 2 ! 17.7 56.1 1.1e-07 0.0018 77 177 .. 975 1065 .. 949 1115 .. 0.46 Alignments for each domain: == domain 1 score: -7.2 bits; conditional E-value: 1 SDA1 320 hkvkskkkrslrekqka 336 +k k+k+kr+ r k+k+ T251535_3 195 KKKKRKRKRRRRRKEKK 211 33444444333333333 PP == domain 2 score: 17.7 bits; conditional E-value: 1.1e-07 SDA1 77 ekwkeeekkkkreeeeedsddeddeedwevesdddseedseggwidvesdeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 174 +k+k+ee+++++eeeee+ ++e++ee++e e+++++ee++eg+ +ee++e+e+eeeeeeeee++ee+eeeeeeeeee+eeeeeeeeeee+ T251535_3 975 KKKKKEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEGE---------EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEDEEEEEEEEEEEE 1062 333333333333122222.222222222222222222333333.........2222222222222222333333222222222222222222222222 PP SDA1 175 eke 177 e+e T251535_3 1063 EEE 1065 222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1963 (0.120385); expected 326.1 (0.02) Passed bias filter: 830 (0.0509015); expected 326.1 (0.02) Passed Vit filter: 479 (0.0293757); expected 16.3 (0.001) Passed Fwd filter: 190 (0.0116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.69u 0.46s 00:00:04.15 Elapsed: 00:00:00.97 # Mc/sec: 4005.16 // Query: T182956_1 [L=6637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.41s 00:00:02.47 Elapsed: 00:00:00.76 # Mc/sec: 24983.33 // Query: T182956_2 [L=6637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 709 (0.0434809); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.32u 0.43s 00:00:02.75 Elapsed: 00:00:00.84 # Mc/sec: 22603.96 // Query: T182956_3 [L=6636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.2 3.2e+02 1.4 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.3 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.034 5.6e+02 89 121 .. 5484 5516 .. 5480 5521 .. 0.89 4 ? 0.4 0.0 0.04 6.6e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.0 0.0 0.11 1.8e+03 94 121 .. 5577 5604 .. 5567 5609 .. 0.82 6 ? 1.1 0.0 0.025 4.1e+02 88 121 .. 5615 5648 .. 5590 5652 .. 0.86 7 ? -0.7 0.0 0.091 1.5e+03 88 121 .. 5659 5692 .. 5635 5697 .. 0.79 8 ? 1.4 0.0 0.02 3.2e+02 88 121 .. 5703 5736 .. 5677 5756 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182956_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182956_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.034 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182956_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.04 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182956_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182956_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 66677777889***************96 PP == domain 6 score: 1.1 bits; conditional E-value: 0.025 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182956_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 57788899999999******************97 PP == domain 7 score: -0.7 bits; conditional E-value: 0.091 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182956_3 5659 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5692 56666677777778889***************96 PP == domain 8 score: 1.4 bits; conditional E-value: 0.02 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182956_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.10u 0.41s 00:00:02.51 Elapsed: 00:00:00.89 # Mc/sec: 21330.86 // Query: T111703_1 [L=5253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.36s 00:00:02.21 Elapsed: 00:00:00.96 # Mc/sec: 15654.10 // Query: T111703_2 [L=5253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.38s 00:00:01.94 Elapsed: 00:00:00.75 # Mc/sec: 20037.25 // Query: T111703_3 [L=5252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.34s 00:00:02.02 Elapsed: 00:00:00.86 # Mc/sec: 17471.02 // Query: T259390_1 [L=2849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.80 # Mc/sec: 10188.13 // Query: T259390_2 [L=2849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.28s 00:00:01.38 Elapsed: 00:00:00.70 # Mc/sec: 11643.58 // Query: T259390_3 [L=2848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.82 # Mc/sec: 9936.15 // Query: T112633_1 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.70 # Mc/sec: 2403.10 // Query: T112633_2 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.70 # Mc/sec: 2403.10 // Query: T112633_3 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.66 # Mc/sec: 2548.74 // Query: T235810_1 [L=6969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.38u 0.53s 00:00:02.91 Elapsed: 00:00:00.86 # Mc/sec: 23182.70 // Query: T235810_2 [L=6969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.52u 0.43s 00:00:02.95 Elapsed: 00:00:01.02 # Mc/sec: 19546.20 // Query: T235810_3 [L=6969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.54s 00:00:03.02 Elapsed: 00:00:00.97 # Mc/sec: 20553.74 // Query: T361710_1 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4883.85 // Query: T361710_2 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5064.73 // Query: T361710_3 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 5154.89 // Query: T311164_1 [L=2331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.75 # Mc/sec: 8891.46 // Query: T311164_2 [L=2331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.70 # Mc/sec: 9526.56 // Query: T311164_3 [L=2331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 27.9 0.0 1.6e-06 27.4 0.0 1.1 1 DUF781 Mouse protein of unknown function (DUF781) Domain annotation for each model (and alignments): >> DUF781 Mouse protein of unknown function (DUF781) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 9.9e-11 1.6e-06 202 285 .. 1715 1798 .. 1712 1802 .. 0.93 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 9.9e-11 DUF781 202 tdkkklysseevsfaeswlssaeyvaaahfqsnleksvkflkqLPsrvLkeaDsaPniadltkeenhtllifswmkeinkllgg 285 + + k+y ++e + w+ s++y+a ++f ++l + +f k+L +r+L ++D+a i d+++ +n +ll + +++++ k g+ T311164_3 1715 SIRLKYYFKQEADRKRNWVLSVDYLAPTRFPTTLIRMNEFQKDLAPRILVSGDKAHFIGDFSNFQNIVLLAVNFLHKVHKHTGD 1798 568899*******************************************************************99999887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 9806.76 // Query: T034734_1 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-22 77.7 0.2 1.6e-21 76.9 0.2 1.3 1 GP41 Retroviral envelope protein 1.6e-09 37.5 2.3 3.4e-09 36.5 2.3 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.012 15.6 0.0 0.24 11.3 0.1 2.7 2 PspB Phage shock protein B Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.9 0.2 3e-25 1.6e-21 2 172 .. 870 1036 .. 869 1047 .. 0.87 Alignments for each domain: == domain 1 score: 76.9 bits; conditional E-value: 3e-25 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWn 98 a v+l ++q+a +v + +kn k + Q +id+kl +++n l + v+ +G+ ++sl+++++++C n C+T+ yna+e +We ++ hl+g + T034734_1 870 AGVALHSSIQTADFVGSWQKNYSKLWNSQSQIDQKLANQINDLRQTVIWMGDRIMSLEHRIQMQCDWNTSEFCITPSSYNATEhDWEMIRRHLQG--K 965 6789******************************************************************************************9..6 PP XHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH CS GP41 99 ntevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivlll 172 + ++ ld++k ++++ ++++++ l+ +d l + a l n + l+W++ i ia + + v l +l l T034734_1 966 EDNLTLDIAKPKRQLFEASQAHLSLLPGADILTGAADGLSNTNP-LKWIKTIG--GSTIANFILVCVCLCCLFL 1036 8899********************************88876655.59**9643..3333333333333444333 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.5 2.3 6.3e-13 3.4e-09 3 84 .. 455 534 .. 453 537 .. 0.86 Alignments for each domain: == domain 1 score: 36.5 bits; conditional E-value: 6.3e-13 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatie 84 ap + +m s eqm t +a pptw q+k+l+ +a l t +++a + ++s+vv+l++ +++ ++ T034734_1 455 APPVRQTAQMNISVEQMETSKTPQATPPTWGQMKRLAHIAEENLRSQNKPLTTSNLMVAMMAVISLVVSLPVAEADQN--YT 534 66667788999*********************************9999999998899999999******998765544..44 PP >> PspB Phage shock protein B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.1 4.4e-05 0.24 25 62 .. 891 928 .. 890 936 .. 0.93 2 ? 0.5 0.0 0.11 5.8e+02 12 40 .. 1025 1053 .. 1019 1055 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 4.4e-05 PspB 25 YrskkkrskglsaedekrLeeLlekAekleeRietLEr 62 Y++ ++++++++++ +++++L+++ + +Ri +LE+ T034734_1 891 YSKLWNSQSQIDQKLANQINDLRQTVIWMGDRIMSLEH 928 9999*********************************7 PP == domain 2 score: 0.5 bits; conditional E-value: 0.11 PspB 12 fvlfVapiWLiLHYrskkkrskglsaede 40 +++ V + L+L Yr +++ +++ ++++ T034734_1 1025 ILVCVCLCCLFLVYRCRRRLGREARHSER 1053 567899999********999988777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 772 (0.0473445); expected 326.1 (0.02) Passed bias filter: 471 (0.0288851); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 4590.33 // Query: T034734_2 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-16 59.0 0.0 6.6e-16 58.4 0.0 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.4 0.0 4.1e-20 6.6e-16 118 168 .. 629 679 .. 626 680 .. 0.95 Alignments for each domain: == domain 1 score: 58.4 bits; conditional E-value: 4.1e-20 HERV-K_env_2 118 pkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 k s++ evl we+ +ansa +lqnn +g iidwaprgqf nc+gq++ c T034734_2 629 IKRSEKLEVLTWEDYIANSAAVLQNNSYGIIIDWAPRGQFAVNCTGQSEDC 679 588999******************************************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 4455.32 // Query: T034734_3 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-09 36.1 0.0 7.1e-09 35.5 0.0 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 4.3e-13 7.1e-09 34 95 .. 544 606 .. 540 626 .. 0.77 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 4.3e-13 HERV-K_env_2 34 egmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvnyl 95 gm++n+sigyr+p iclg a g l q w+v vp + f h +sg +++ ++yl T034734_3 544 GGMLMNVSIGYRFPAICLGPAAGFLNYDTQSWMVYVPAHNGSKAF-IHAISGRTFQSldTIKYL 606 59***********************************98876666.578888776541145555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.70 # Mc/sec: 4328.03 // Query: T379416_1 [L=660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3312.54 // Query: T379416_2 [L=660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3853.36 // Query: T379416_3 [L=659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.1 0.0 0.045 13.5 0.0 1.8 2 Homeobox Homeobox domain Domain annotation for each model (and alignments): >> Homeobox Homeobox domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 0.36 5.8e+03 23 38 .. 173 188 .. 172 188 .. 0.87 2 ? 13.5 0.0 2.7e-06 0.045 6 45 .. 371 410 .. 370 411 .. 0.94 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.36 SS-SHHHHHHHHHHHT CS Homeobox 23 rypsaeereeLAkklg 38 + p++e++ +L++ lg T379416_3 173 PRPDHERIPDLTATLG 188 689********99885 PP == domain 2 score: 13.5 bits; conditional E-value: 2.7e-06 SS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHH CS Homeobox 6 tftkeqleeLeelFeenrypsaeereeLAkklgLeerqVk 45 +f++ l+eL + F ++ y++ +r++LA ++++e+ V T379416_3 371 AFSRLHLKELDSIFPRSEYLDVFARKQLAICMDVSEAEVE 410 588899******************************9995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 2900.44 // Query: T099561_1 [L=6464] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.45 10.4 5.8 3.9 7.4 2.1 3.5 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.1 0.01 1.7e+02 17 29 .. 634 646 .. 632 647 .. 0.93 2 ? 7.4 2.1 0.00024 3.9 17 30 .. 3001 3014 .. 2999 3015 .. 0.96 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.01 Toxin_18 17 CSGAcSaaFgyCL 29 CSGA Sa +CL T099561_1 634 CSGAISAHRKLCL 646 *******999998 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00024 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T099561_1 3001 CSGAISAHCNLCLP 3014 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6464 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.91u 0.37s 00:00:02.27 Elapsed: 00:00:00.76 # Mc/sec: 24332.11 // Query: T099561_2 [L=6463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.41s 00:00:02.31 Elapsed: 00:00:00.74 # Mc/sec: 24985.87 // Query: T099561_3 [L=6463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.89 # Mc/sec: 20774.77 // Query: T143036_1 [L=5347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.79 # Mc/sec: 19363.11 // Query: T143036_2 [L=5347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.38s 00:00:02.12 Elapsed: 00:00:00.92 # Mc/sec: 16627.02 // Query: T143036_3 [L=5346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.37s 00:00:02.12 Elapsed: 00:00:00.80 # Mc/sec: 19117.50 // Query: T126996_1 [L=6703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-23 80.6 0.0 3.7e-11 43.1 0.0 2.3 2 rve Integrase core domain 1.8e-19 69.7 10.4 1.3e-14 53.7 3.2 2.4 2 TLV_coat ENV polyprotein (coat polyprotein) 1.9e-17 63.4 0.0 6.3e-17 61.7 0.0 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 9.6e-10 38.5 0.0 2e-09 37.5 0.0 1.5 1 RVP Retroviral aspartyl protease 0.00036 20.3 1.8 0.00092 19.1 1.8 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.026 14.2 0.0 0.85 9.3 0.0 2.4 2 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.1 0.0 1.4e-14 3.7e-11 39 117 .. 2207 2283 .. 2205 2285 .. 0.87 2 ! 35.3 0.0 3.6e-12 9.8e-09 39 118 .. 4506 4583 .. 4504 4584 .. 0.86 Alignments for each domain: == domain 1 score: 43.1 bits; conditional E-value: 1.4e-14 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 a+++ +e +a +vi l + ++ p + sDng+++ts+ ++++ + l i++ ++ p++pq+ GkvEr+n++lk T126996_1 2207 AFPTGSE-KATAVISSLLSDIIPQFSL-PTSIQSDNGPAFTSQITQAVSQALSIQWNLHIPYSPQSSGKVERTNGLLKV 2283 6678888.6666666666666667776.************************************************995 PP == domain 2 score: 35.3 bits; conditional E-value: 3.6e-12 rve 39 aeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 a+++ +e +a +vi l + ++ p + sDng+++ts+ ++++ + l i++ ++ p++pq+ GkvE + ++lk++ T126996_1 4506 AFPTGSE-KATAVISSLLSDIIPQFSL-PTSIQSDNGPAFTSQITQAVSQALSIQWNLHIPYSPQSSGKVEWTKGLLKTH 4583 6678888.6666666666666667776.*******************************************999999976 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.7 7.9e-08 0.00021 243 280 .. 2602 2639 .. 2592 2666 .. 0.85 2 ! 53.7 3.2 4.8e-18 1.3e-14 467 561 .] 3016 3106 .. 3015 3106 .. 0.87 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 7.9e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavngs 280 +++++++L a+npsl+++CwlC+ +++ y a++++++ T126996_1 2602 INLTHSLLAASNPSLVNNCWLCISLSSSAYTAVPTLQT 2639 6889*****************************98764 PP == domain 2 score: 53.7 bits; conditional E-value: 4.8e-18 HHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXX...XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 467 lLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllglspw...lttllstilgpLlllLLiLllGPcilnrLvqlik 561 lL++e+ GlC L+EeCCFy ++sg++ d+i+kL+ r q+l ++ + e + ls w ++++l +pL+ + L+Ll+GP+i+ + q+i+ T126996_1 3016 LLTVEKRGLCIFLNEECCFYLNQSGLMYDNIKKLKHRA---QKLANQASNYAEPPYALSNWms*VLPIL----SPLIPIFLLLLFGPWIFCLVSQFIQ 3106 8*********************************9875...55666666666889******44446777....******************9999996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.7 0.0 2.3e-20 6.3e-17 1 222 [] 1751 1920 .. 1751 1920 .. 0.91 2 ? -1.7 0.0 0.56 1.5e+03 124 144 .. 4183 4203 .. 4170 4205 .. 0.84 Alignments for each domain: == domain 1 score: 61.7 bits; conditional E-value: 2.3e-20 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 ++K++ +syR++ d++++n+++ +++ p+ + s + +++++lDlk+a +svpl+ l+++l+af+ T126996_1 1751 VQKPD-KSYRLV----QDLRLINQIVLP---------IHPVVPNPYTLSSS------------IPSSTTHYSTLDLKDASFSVPLHPLSQPLFAFTWT 1822 58***.*****7....7***********.........99999999999555............44677*****************************9 PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEE.CTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllr.YaDDililskskeelqelleaveewlkesg 195 ++ + +++ ++++lpqG+ SP f+ ++++ l +++ + +l Y+DD+l+ s s e+ q+ + ++l + g T126996_1 1823 DP-------------------DTHQSQQLTWAVLPQGFRDSPHYFSQALSHDLLSFHP---SASHLI*YIDDLLLCSPSFESSQQDTLLLLQHLLSKG 1898 88...................334599*******************999887777777...689999************9999999999999****** PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 ++++p+K ++ s++v+yLG++l T126996_1 1899 YQVSPSKAQIS-----SSSVTYLGIIL 1920 ***********.....9*******975 PP == domain 2 score: -1.7 bits; conditional E-value: 0.56 TEEEEESB--ST-TTHHHHHH CS RVT_1 124 egryekkglpqGsvlSPllfn 144 ++ ++++ pqG++ SP f+ T126996_1 4183 AQQITWAVRPQGFTDSPHYFS 4203 67889************9997 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.5 0.0 7.5e-13 2e-09 7 100 .. 1561 1649 .. 1556 1650 .. 0.89 Alignments for each domain: == domain 1 score: 37.5 bits; conditional E-value: 7.5e-13 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ ++gk ++ l+ tG ++++++ + P + a+ ++ G+ g+ ++ ++ +++++ ++ + + s+l++p++pv+llGrd+L+kl + L T126996_1 1561 VTLTVEGKSTHCLIETGTTHSMLPSFQGPVS----LASITVVGMDGQASKPLKTP-QLWCQLRHYSLKHSFLVIPTCPVPLLGRDILSKLSASL 1649 7899***************************....9**********998888877.4555556666668*********************9988 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 1.8 3.4e-07 0.00092 2 18 .] 3832 3848 .. 3831 3848 .. 0.94 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 3.4e-07 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C + GH+a++Cp+ T126996_1 3832 ACYTCWKSGHWAKECPQ 3848 7***************7 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.00031 0.85 2 33 .. 2257 2288 .. 2256 2298 .. 0.87 2 ? 2.1 0.0 0.056 1.5e+02 2 34 .. 4556 4588 .. 4555 4595 .. 0.88 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00031 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellne 33 i++++ p++Pq g+vE+ ng l+ ++ + T126996_1 2257 SIQWNLHIPYSPQSSGKVERTNGLLKVHITKL 2288 5899999******************9887665 PP == domain 2 score: 2.1 bits; conditional E-value: 0.056 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdellnee 34 i++++ p++Pq g+vE g l+++l + + T126996_1 4556 SIQWNLHIPYSPQSSGKVEWTKGLLKTHLTKLS 4588 5899999*******************9987765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 2.16u 0.43s 00:00:02.59 Elapsed: 00:00:00.79 # Mc/sec: 24273.60 // Query: T126996_2 [L=6703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-20 72.6 0.1 4.1e-20 71.8 0.1 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 0.0061 16.0 0.0 0.0094 15.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0065 15.9 0.0 0.013 14.9 0.0 1.3 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 0.1 7.6e-24 4.1e-20 352 465 .. 2899 3014 .. 2885 3021 .. 0.90 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 7.6e-24 .XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXX...XXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 352 lstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaa...gvgtGttgl.vstqqfkkLqaalekDvqaleesI 444 ++ l++++t+ C l+ l P+i++++ + ++ + t+++R + l++l++GLg++a ++gtG++g+ s+ +f++L++ + + +++++ T126996_2 2899 PNMCLPANWTGTCTLVFLTPKIQFANRNeELPVPLMTPTQQRR---VIPLIPLMVGLGLSAstiALGTGIAGIsTSVMTFRSLSNDFSASITDMSQTL 2993 57889********************9888788888999999**...99*********7766333789******9************************ PP HHHHHHHHHHHHHHHHHHHHH CS TLV_coat 445 skleksltslaevvlQNRRGL 465 s l+ +++sla vvlQN RGL T126996_2 2994 SVLQAQVDSLAAVVLQNHRGL 3014 ********************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 1.7e-06 0.0094 2 96 .. 4106 4174 .. 4105 4174 .. 0.88 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.7e-06 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafk 96 K++ + yR++ +++++n+++ +++ p+ + s + ++ ++++ lDlk aF+++pl+ +++l+af+ T126996_2 4106 LKPD-KAYRLL----QNLRVINQIVLP---------IHPVVPNPYTLLS------------SIPPSTTHYSVLDLKHAFFTIPLHPSSQRLFAFS 4174 6999.*****6....6***********.........9999999999922............246777*************************995 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 2.3e-06 0.013 138 181 .. 3719 3762 .. 3714 3762 .. 0.95 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 2.3e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + r+t dp+ + + + + fi+qsa+di+ T126996_2 3719 KNPAQFMARLAATLTRFTALDPKRSKGRLILNIHFITQSAPDIK 3762 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 378 (0.0231817); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.38u 0.44s 00:00:02.82 Elapsed: 00:00:00.83 # Mc/sec: 23103.79 // Query: T126996_3 [L=6702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-07 30.7 0.0 4.3e-07 30.0 0.0 1.3 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.0 0.0 2.7e-11 4.3e-07 5 94 .. 3916 4000 .. 3912 4003 .. 0.88 Alignments for each domain: == domain 1 score: 30.0 bits; conditional E-value: 2.7e-11 SEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHC CS RVP 5 PllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLq 94 ++++ ++gk i +l+ t A+++ ++ + P + a++++ Gi g+ ++ ++ ++++++++ + + s+ ++p++pv+llGrd L+ T126996_3 3916 HRVTLTVEGKSIPFLINTEATHSTLPSFQGPVS----LASVTVVGIDGQASKPLKTP-QLWCQFRHYSFKHSFSVIPTCPVPLLGRDTLN 4000 57899****************************....*************8888777.5666666666667****************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.03u 0.41s 00:00:02.44 Elapsed: 00:00:00.85 # Mc/sec: 22556.80 // Query: T222362_1 [L=2042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 8466.40 // Query: T222362_2 [L=2042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 8113.63 // Query: T222362_3 [L=2042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 546 (0.0334846); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 8227.91 // Query: T269666_1 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.059 12.8 0.0 0.11 12.0 0.0 1.3 1 HTH_24 Winged helix-turn-helix DNA-binding Domain annotation for each model (and alignments): >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 6.6e-06 0.11 11 39 .. 540 568 .. 539 569 .. 0.93 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 6.6e-06 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 ++++++ ++ +e+Ae+l++ +stv ++lk T269666_1 540 IIEADSLTTTQEVAEELNVDLSTVVWHLK 568 7899999*******************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 3701.20 // Query: T269666_2 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-19 67.6 0.0 1.4e-18 66.3 0.0 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.3 0.0 8.8e-23 1.4e-18 9 80 .] 629 693 .. 628 693 .. 0.93 Alignments for each domain: == domain 1 score: 66.3 bits; conditional E-value: 8.8e-23 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 aqWld++ pk++p++ ++tVwWsa+gli+y fl+pge itse+Yaqq+ +++q q+++pal+nr T269666_2 629 AQWLDRE-DPKHFPNS------NLVTVWWSAAGLIHYIFLNPGEIITSEKYAQQIYEVHQIPQCLQPALANR 693 7998876.57999987......689********************************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.63 # Mc/sec: 3759.95 // Query: T269666_3 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 3755.41 // Query: T325988_1 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.61 # Mc/sec: 4642.99 // Query: T325988_2 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 5244.85 // Query: T325988_3 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 5244.85 // Query: T076799_1 [L=390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-05 22.2 0.5 0.00016 21.5 0.5 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf 0.0072 16.6 0.0 5.4 7.4 0.0 2.3 2 PseudoU_synth_1 tRNA pseudouridine synthase ------ inclusion threshold ------ 0.083 12.8 0.0 14 5.5 0.0 2.3 2 ODC_AZ Ornithine decarboxylase antizyme Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.5 3e-08 0.00016 20 74 .. 146 200 .. 128 206 .. 0.68 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 3e-08 HERV-K_REC 20 klpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvm 74 t++++pp w q+kkl+q+ l t +++a +++++ +a v T076799_1 146 VKSNTRRTQPPIWGQIKKLSQMVEENLRKVGQPVTTSNLMVAMIVVITTASADVD 200 456799*****************99997555555665566665556666666555 PP >> PseudoU_synth_1 tRNA pseudouridine synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.4 0.0 0.00099 5.4 1 24 [. 8 31 .. 8 41 .. 0.84 2 ! 7.0 0.0 0.0013 7.3 1 24 [. 351 374 .. 351 386 .. 0.82 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00099 PseudoU_synth_1 1 AakelvGthdfgsfrkqkqekkst 24 A+ ++vG+ f++f++ ++e++++ T076799_1 8 AVNKYVGKSLFRAFSSEDCETPDF 31 7899***************99553 PP == domain 2 score: 7.0 bits; conditional E-value: 0.0013 PseudoU_synth_1 1 AakelvGthdfgsfrkqkqekkst 24 A+ ++vG+ f++f++ ++e++++ T076799_1 351 AVNKYVGKSLFRAFSSEGCETPDF 374 7899***************99543 PP >> ODC_AZ Ornithine decarboxylase antizyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.0027 14 3 24 .. 5 26 .. 3 34 .. 0.87 2 ? 4.9 0.0 0.0043 23 3 24 .. 348 369 .. 346 381 .. 0.87 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0027 ODC_AZ 3 ewlEvwdyvggasfrgfvaekv 24 +w+ v +yvg+++fr+f +e++ T076799_1 5 DWFAVNKYVGKSLFRAFSSEDC 26 799999***********99986 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0043 ODC_AZ 3 ewlEvwdyvggasfrgfvaekv 24 +w+ v +yvg+++fr+f +e + T076799_1 348 DWFAVNKYVGKSLFRAFSSEGC 369 799999***********98865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.57 # Mc/sec: 1923.66 // Query: T076799_2 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.43 10.6 2.7 12 6.0 0.3 2.1 2 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (D Domain annotation for each model (and alignments): >> DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 0.1 0.0018 30 7 48 .. 2 41 .. 1 52 [. 0.84 2 ? 6.0 0.3 0.00075 12 6 49 .. 344 385 .. 341 387 .. 0.88 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0018 DPM3 7 tlalallllalwlalllrlvslplskvqdevvpvlPfwalvl 48 +l+++lll+ w+ l +l l+ +v ++ ++P+++ v+ T076799_2 2 MLMTGLLLINTWVNLSSGLSALK--TVRPQISHFAPLYFCVC 41 5788999999***9999999555..99***********9886 PP == domain 2 score: 6.0 bits; conditional E-value: 0.00075 DPM3 6 ktlalallllalwlalllrlvslplskvqdevvpvlPfwalvlf 49 +l+++lll+ w+ l+ +l l+ v ++ ++P+++ v++ T076799_2 344 TMLMTGLLLINTWVNLCSGLSALK--AVRPQISHFAPLYFCVCL 385 5789999************99655..9999*********99875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 2099.74 // Query: T076799_3 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 1824.37 // Query: T351471_1 [L=9688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2 8.1 6.1 3.6 7.2 6.1 1.4 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.1 0.00022 3.6 1 25 [. 3622 3646 .. 3620 3648 .. 0.78 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00022 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T351471_1 3622 GRKEGRKGGREEGRKEGRKEGRKEG 3646 6678888888888888888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2238 (0.13725); expected 326.1 (0.02) Passed bias filter: 339 (0.0207899); expected 326.1 (0.02) Passed Vit filter: 260 (0.0159451); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 7.39u 0.80s 00:00:08.19 Elapsed: 00:00:01.47 # Mc/sec: 18854.23 // Query: T351471_2 [L=9688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-25 87.3 2.8 8.4e-25 87.3 2.8 2.4 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 87.3 2.8 5.2e-29 8.4e-25 408 560 .. 1084 1232 .. 1069 1233 .. 0.84 2 ? -25.9 37.6 1 1.6e+04 54 258 .. 2672 2868 .. 2618 2911 .. 0.46 Alignments for each domain: == domain 1 score: 87.3 bits; conditional E-value: 5.2e-29 XXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHH...HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHH CS TLV_coat 408 giaagvgtGttgl.vstqqfkkLqaalekDvq...aleesI.skleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakL 500 gi +g+ tG+ g+ stq + kL+++l++D++ l ++ s +l sla +lQNRR LDlL++++ G C+ L EeCC+++++sgiv ++++L T351471_2 1084 GILGGLWTGIGGItTSTQFYYKLSQELNDDIE*vaGLLVTL*S----QLNSLAAAALQNRRALDLLTAKRCGTCLFLGEECCYFVNQSGIVIQKVKEL 1177 7888888999999888888999999999997443356555454....689*****************************************9999999 PP .HHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 501 .qerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqli 560 + q q l + w + + pwl+++l gp+++++++L+ GPci+n Lv++i T351471_2 1178 *DQIQCQAQDLHDTG-PW-SIVNQWMPWLLPFL----GPMVAIVMLLMYGPCIFNLLVKFI 1232 977777766655554.44.89999*********....***********************9 PP == domain 2 score: -25.9 bits; conditional E-value: 1 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX.......XXXXXXX.XX CS TLV_coat 54 pdqetksvksvaedlsakltaqslkpeCkkkpkrtasaneklyvcPgearkraerrhcGglsslYeaewqCettgktywtaasswdlitlkknkt.ss 150 +++ +s+++ ++++s+++t++s + +C ++++ + +++++ + + + ++ ++ ss+ +++ + tt++t+ t++s+ +t + ++ + T351471_2 2672 STSACTSTSTFTSTSSTSNTSTSSTSNCTRSISTGTCTTSSISTT-STCITSST-NSSSSSSSTCTSNTRTSTTNRTSSTCTSTSTTGTSTTSSNsTG 2767 222223333333444444444445555555555544444444444.23323221.1112334444455555555555555544444433333322212 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXX CS TLV_coat 151 ktqevtqegscnkLilaftkkGkkaktllwglrlyvsGydPlltfsirlkvkkleevlkdqkppsqphplalplaretspekegtddrlldllqgayl 248 +t++ t++ s++ + +t + ++a+t + + +++ + ++ ++ + ++++ +++ + ++ ++ r t+ + ++++ ++++ ++ T351471_2 2768 STSSRTYTSSSSTSTSISTTSSTSANTSTSTTS----ST-STIICT-SSTSTNTNSTSSSRSTSTSGNSTSTSKTR-TTGSASTSTNSTSSISATSTC 2858 222222222221111111111122211111111....11.112222.23344444444444444444444444444.333334444444444444444 PP XXXXXXXXXX CS TLV_coat 249 tLnatnpslt 258 + +t+++ t T351471_2 2859 ISSSTSTNST 2868 4444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2217 (0.135962); expected 326.1 (0.02) Passed bias filter: 494 (0.0302956); expected 326.1 (0.02) Passed Vit filter: 392 (0.0240402); expected 16.3 (0.001) Passed Fwd filter: 71 (0.00435423); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 11.35u 0.78s 00:00:12.13 Elapsed: 00:00:02.22 # Mc/sec: 12484.56 // Query: T351471_3 [L=9688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00018 21.2 5.9 0.00018 21.2 5.9 3.0 3 Coilin_N Coilin N-terminus 0.0036 17.4 0.0 0.0063 16.6 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.2 4.3 2 1.6e+04 100 130 .. 3595 3624 .. 3579 3635 .. 0.43 2 ? -9.3 34.7 2 1.6e+04 85 137 .. 6113 6166 .. 6101 6172 .. 0.37 3 ! 21.2 5.9 2.2e-08 0.00018 79 138 .. 6271 6328 .. 6184 6330 .. 0.59 Alignments for each domain: == domain 1 score: -5.2 bits; conditional E-value: 2 Coilin_N 100 ksasttkqkkkkkrekkqeeqdeqkasqaak 130 +s++ k+kk +k+e+ +e + +++++++ T351471_3 3595 ESETWLKRKKGRKKERGSER-ERREEGRKER 3624 33333344444444442222.2222222222 PP == domain 2 score: -9.3 bits; conditional E-value: 2 Coilin_N 85 eaqesededsresssksas.ttkqkkkkkrekkqeeqdeqkasqaakdkkkkkk 137 +++++e +++r+++sk+++ ++k+kk++kr++k+e ++e k++++++ k kk k T351471_3 6113 KKKKKERKKKRKKESKRKKeERKKKKERKRKRKKERKKERKKERKKERKRKKGK 6166 333333333333333333302333333333333333333333333333322222 PP == domain 3 score: 21.2 bits; conditional E-value: 2.2e-08 Coilin_N 79 gsktkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 + ++e ++se+e+++e++ k++ ++++kk+kkr++k+e+++++ ++++++ kkk++kk T351471_3 6271 RL--QNEREKSEQEREKEKERKKERKKERKKEKKRKEKKEKERKEGRERKKERKKKERKK 6328 44..45555666777777777777777888888888888888877777777777777666 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 7.7e-07 0.0063 4 98 .. 811 900 .. 808 902 .. 0.91 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 7.7e-07 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT- CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgv 98 +P + + i+g+ +++llDtG +v+ P++ +++++++ ++g+ +++s+ +++ f+ +li+ ++p +ll rd+L k g+ T351471_3 811 EPWISLTIEGQETNFLLDTGVAFSVLLF--CPGK--LSSRSVTIKVVLGQPvTRYFSHPLSCGWGTLFFSL--AFLIMLQSPPPLLERDILAKAGA 900 7999*********************975..7888..77999******99998999999999********99..9999999***********99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1897 (0.116338); expected 326.1 (0.02) Passed bias filter: 586 (0.0359377); expected 326.1 (0.02) Passed Vit filter: 387 (0.0237336); expected 16.3 (0.001) Passed Fwd filter: 127 (0.00778854); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 10.85u 0.65s 00:00:11.50 Elapsed: 00:00:01.77 # Mc/sec: 15658.60 // Query: T140487_1 [L=1915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.53 # Mc/sec: 10336.77 // Query: T140487_2 [L=1915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.26s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 10535.56 // Query: T140487_3 [L=1915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 10535.56 // Query: T327326_1 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0037 17.4 0.0 0.009 16.1 0.0 1.6 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.0 0.84 1.4e+04 32 45 .. 91 104 .. 82 130 .. 0.72 2 ! 16.1 0.0 5.5e-07 0.009 17 87 .. 711 838 .. 708 925 .. 0.75 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 0.84 EEEEEEEBSCCGHH CS xxxxxxxxxxxxxx RF Exo_endo_phos 32 vlglqEvdddelsr 45 v ++qE +++ + T327326_1 91 VCCFQENNNKLSLK 104 899***66655444 PP == domain 2 score: 16.1 bits; conditional E-value: 5.5e-07 HHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........................EEEEEEESSSTTSSEEEEEECSEEEEE........ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF Exo_endo_phos 17 rsaaladllkaydadvlglqEvdddelsrlplla...........................dadaskfgtgkgqggvavlsrfpltsl........ 77 +++la+++k++d+ ++qE++ ++ +l+ ++ +++++g ++++ ++++ T327326_1 711 LKDRLANWIKSQDPLMCCIQETHLTCRDTHRLKLkgwrki*qangkqkeqgfqs*slikqtL-----TKVKRDKEGHYIIVKGSMQQEeltilniy 801 589******************99999888877779999999999999999999999655440.....44555566667777777755556777777 PP ........................EEEEEE-SS...- CS ........................xxxxxxxxx...x RF Exo_endo_phos 78 ........................vivlGDfNa...r 87 i++GDfN+ + T327326_1 802 apntgaprfikqvlrdlerdldshTIIMGDFNTplsT 838 777777777888888888888888********96662 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 9666.30 // Query: T327326_2 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-30 105.8 9.6 1.7e-28 99.4 1.9 2.4 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 1.1 1.1e-05 0.18 149 174 .. 444 469 .. 439 469 .. 0.88 2 ! 99.4 1.9 1.1e-32 1.7e-28 220 320 .. 513 615 .. 510 617 .. 0.90 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 1.1e-05 HHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 149 eervsaaedeieeidrevkerekrkk 174 +vs +ed+++e++re k+rek kk T327326_2 444 GRKVSVIEDQMNEMKREEKFREKSKK 469 568********************987 PP == domain 2 score: 99.4 bits; conditional E-value: 1.1e-32 -HHHHHHT---EEEEEEESSSS-TSSSS..--EEEEE.ESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHHHTT- CS Transposase_22 220 fPnlkkeanviiqeiyrtPnrqdskras..srhiivr.ttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilkekkf 310 +P k an++iqei+rtP+r++s+ra+ + hi + +tkv++k+k+l+a+rek vt k kP+rltadl aetl+arre ++++ilke T327326_2 513 LPQHSKGANIQIQEIQRTPQRYSSRRATttPTHI-IV*FTKVEMKKKMLRAAREKCWVTHKRKPVRLTADLPAETLQARRE*G-PIFNILKEFST 605 6888999*******************97224565.46779***************************************9554.9********** PP --EEETTTEE CS Transposase_22 311 qPrllyPakl 320 q ++ P+kl T327326_2 606 QNFISSPTKL 615 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 10052.96 // Query: T327326_3 [L=1757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-52 177.7 1.5 3.9e-52 176.8 1.5 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 1e-34 119.9 2.7 1.4e-20 73.4 0.8 2.5 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 176.8 1.5 4.7e-56 3.9e-52 1 222 [] 1197 1453 .. 1197 1453 .. 0.96 Alignments for each domain: == domain 1 score: 176.8 bits; conditional E-value: 4.7e-56 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kll+++q+gf pg + + ++ ++++++++ k+++++++D +kaF++++ + l T327326_3 1197 IPKPGrdtteKENFRPISLMNIDAKILNKILANRIQQHIKKLLHHDQVGFIPGMQGWFNIcksiNVIQHINRTSDKNHTIISIDAEKAFNKIQQLFML 1294 89999999999****************************************************99999999999************************ PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ T327326_3 1295 KTLNKLGTNGMYLKIVRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeiqgiqlgkEEVKLSLFADDMIVYLENpI 1392 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++q+ll+ ++++ k sg+kin +K++++l+ + s+++kyLG++l T327326_3 1393 VSAQNLLKLISNFSKVSGYKINLQKSQAFLYtnnrqtesqimsELpfttASKRIKYLGIQL 1453 77***************************99999988877775115668*********986 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.4 0.8 1.7e-24 1.4e-20 171 230 .. 464 523 .. 458 541 .. 0.87 2 ! 45.8 0.0 4.1e-16 3.3e-12 308 364 .. 601 657 .. 598 661 .. 0.90 Alignments for each domain: == domain 1 score: 73.4 bits; conditional E-value: 1.7e-24 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT--- CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanvi 230 +k ++eqslq+i+d+vkrP l liGv+e + e+ +klen+l++ii+enfPn+++e + T327326_3 464 EKKVKNEQSLQEIWDYVKRPTLHLIGVPEGDRENRTKLENTLQDIIQENFPNIAREPTFK 523 345679*************************************************97765 PP == domain 2 score: 45.8 bits; conditional E-value: 4.1e-16 TT---EEETTTEEEEESSS.SEEEESSHHHHHHHHTT-HHHHHHHTTT-SSXSSXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidG.eikvfidktklrdylstrPalkrllkeknerkdryqal 364 k+fqPr++ Pa+ls+i+ ei+ f dk++lrd+++trPal++llke +++ + q++ T327326_3 601 KNFQPRISSPAQLSLIS-E*EIRSFTDKQMLRDFVTTRPALQELLKEALNKHGKEQPV 657 79************986.666**************************98888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 9666.30 // Query: T045386_1 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-14 53.5 0.0 3.5e-14 52.9 0.0 1.3 1 rve Integrase core domain 0.0059 16.2 0.0 0.012 15.2 0.0 1.5 1 rve_3 Integrase core domain ------ inclusion threshold ------ 0.12 12.5 0.2 0.22 11.6 0.2 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.9 0.0 6.5e-18 3.5e-14 3 118 .. 649 761 .. 647 762 .. 0.92 Alignments for each domain: == domain 1 score: 52.9 bits; conditional E-value: 6.5e-18 rve 3 rpgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 +p lwq D+ +++ +++++ ++l+ d++sr+ +a++ + +a+ i+ l + + + p + sD+g+ +++k++ +++ gi++s++ p + T045386_1 649 QPATLWQLDYIgPLP--SWKEQRFVLTGRDTYSRYGFAYPAHNA-SAKISIHGLTECLTPHHCI-PHSIASDQGTYFVAKEVWQWAHAQGIHWSYHVPCH 744 799********7777..66667**********************.9999999998888888887.*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 p+ G++Er n++lk + T045386_1 745 PEAVGLIERWNGLLKSH 761 **************976 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 2.2e-06 0.012 1 48 [. 733 780 .. 733 782 .. 0.94 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2.2e-06 rve_3 1 lgielsyiapgkPqqNglvEsfngtlrdellneelfrslaeareklea 48 +gi +sy p +P gl+E+ ng l+ +l ++ +l++ +++l++ T045386_1 733 QGIHWSYHVPCHPEAVGLIERWNGLLKSHLQHQPGDNTLQDWDKVLQK 780 599**************************************9999986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.2 4.1e-05 0.22 5 127 .. 435 557 .. 431 571 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 4.1e-05 EEEEEEEEECTTTEE.EEEEEECTT..EEEEEEECCCEHHHHHHH....HHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBH CS RNase_H 5 vvYtDGsclgnsgeg.gagavlykegarnisapleeaqtnnraEL....sAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpv 98 ++tDGs++ g+ ++ a + + +r+ + +e + + aEL v a k+ ++++v +ytDS +g+ w +wkk ++ + ++++ T045386_1 435 AWFTDGSAQ-YIGTT*KWTAAALQPLSRTSLKDSSEGKFSQWAEL*avyLVVQFAWKE--KWPDVLLYTDSWTEANGLVGWSGTWKK---HD*KIGEEEI 528 577777744.456667665544334446555555567777777777543444445554..78*********999***********87...4666666678 PP TTHHHHHHHHHCHCSSEEEEEE-SCCSSS CS RNase_H 99 knkelaellkelakkkkvqlkhvkgHaGd 127 + ++ e k +k+ ++hv +H+ + T045386_1 529 WRRGMWMNHPEWSKTVKIFVSHVSAHQRV 557 999***********************866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 8700.29 // Query: T045386_2 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.2 0.0 1.9e-06 27.5 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.0 1.2e-10 1.9e-06 10 113 .. 832 935 .. 824 950 .. 0.85 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 1.2e-10 STT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE..-TT-EEEEEEEEEBECG CS dUTPase 10 spesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvki..kkgdRiAqLifarilta 107 + sAg+++ ++ t++pg+t+++p++ ++ l+ g+ +l lp a+kg++v+ gvid y+ e+++ l n++k+ ++ ++gd +A+L++ ++ + T045386_2 832 TFVSAGLEVLVPAGGTLPPGDTTRIPLNWKLRLSPGHFGLFLPLCPQAKKGVTVLEGVIDPVYEDEISLLLHNRGKE--EYa*NTGDSLAHLLVLPCPVI 929 5569************************************************************************5..444889999999999999776 PP EEEEES CS dUTPase 108 eleeve 113 +++ T045386_2 930 KVNGRL 935 665544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8700.29 // Query: T045386_3 [L=1551] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1551 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 8700.29 // Query: T198828_1 [L=474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 751 (0.0460567); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 2767.42 // Query: T198828_2 [L=474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 993 (0.0608978); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 2658.89 // Query: T198828_3 [L=473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 921 (0.0564823); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 2761.58 // Query: T225832_1 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 95 (0.00582608); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 2615.62 // Query: T225832_2 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 2513.04 // Query: T225832_3 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2557.58 // Query: T352841_1 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 2193.30 // Query: T352841_2 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 656 (0.0402306); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.39s 00:00:01.66 Elapsed: 00:00:00.60 # Mc/sec: 2078.87 // Query: T352841_3 [L=436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 2188.28 // Query: T093336_1 [L=2390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 12661.82 // Query: T093336_2 [L=2390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 12661.82 // Query: T093336_3 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 13143.31 // Query: T001784_1 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 473 (0.0290077); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5788.97 // Query: T001784_2 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 5788.97 // Query: T001784_3 [L=1032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5788.97 // Query: T368943_1 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 7466.21 // Query: T368943_2 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 7770.95 // Query: T368943_3 [L=1330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 6448.99 // Query: T111737_1 [L=3054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00036 19.4 3.7 0.00069 18.4 2.2 1.8 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 2.2 4.2e-08 0.00069 211 259 .. 2829 2877 .. 2821 2878 .. 0.92 2 ? -0.1 0.0 0.018 2.9e+02 292 332 .. 2904 2945 .. 2902 2949 .. 0.86 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 4.2e-08 HHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 211 ilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl 259 i+++i en +l k+++ +iqe+++ Pn+ +sk ++r i ++++k++ T111737_1 2829 IFKEITVENSSDLWKKMDTQIQEAQKIPNKMNSKTFTARDIKIKLSKTK 2877 89*****************************************998875 PP == domain 2 score: -0.1 bits; conditional E-value: 0.018 HHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEES CS Transposase_22 292 lkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfi 332 l +rew d++++l k+ + + P kls+ + e f+ T111737_1 2904 LANQREWDDILKVLTFLKLPSKNTVPGkKLSFRNEDERHTFQ 2945 5678***************99999996369***999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.73 # Mc/sec: 11968.46 // Query: T111737_2 [L=3054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 11806.72 // Query: T111737_3 [L=3054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.3 1.6 0.084 12.6 1.6 1.2 1 Sec8_exocyst Sec8 exocyst complex component specific domain Domain annotation for each model (and alignments): >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 1.6 5.2e-06 0.084 62 120 .. 2729 2787 .. 2724 2789 .. 0.92 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.2e-06 Sec8_exocyst 62 ehyqaFnssigsYskilssiqesqekvselKesleeskkklstkkkeLkelnarsakyk 120 e + Fn+ + +k + i+e ++ +++lK+sl e ++ l + +k ++el++rs++ + T111737_3 2729 EQWENFNKETENAKKYQTEIMELKNMITALKKSLDEGNSRLDQAEKRISELKERSLEIN 2787 66789**************************************************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 744 (0.0456274); expected 326.1 (0.02) Passed bias filter: 358 (0.0219551); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.60u 0.38s 00:00:01.98 Elapsed: 00:00:00.77 # Mc/sec: 11346.72 // Query: T137310_1 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.69 # Mc/sec: 3573.96 // Query: T137310_2 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.65 # Mc/sec: 3793.90 // Query: T137310_3 [L=861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 4174.87 // Query: T191681_1 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 5871.51 // Query: T191681_2 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 5435.58 // Query: T191681_3 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.70 # Mc/sec: 5280.27 // Query: T381761_1 [L=167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.54 # Mc/sec: 884.74 // Query: T381761_2 [L=167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-06 28.7 0.1 2e-06 28.4 0.1 1.1 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.1 1.2e-10 2e-06 34 99 .. 47 111 .. 31 120 .. 0.90 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.2e-10 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381761_2 47 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 111 579***********************************************99987.7777777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 294 (0.0180302); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.55 # Mc/sec: 868.65 // Query: T381761_3 [L=166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.55 # Mc/sec: 863.45 // Query: T383194_1 [L=2765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 11464.05 // Query: T383194_2 [L=2765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.63 # Mc/sec: 12555.86 // Query: T383194_3 [L=2764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.66 # Mc/sec: 11980.81 // Query: T090340_1 [L=1270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-31 108.0 13.5 3.2e-31 107.2 13.5 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.2 13.5 2e-35 3.2e-31 13 89 .] 167 242 .. 165 242 .. 0.98 Alignments for each domain: == domain 1 score: 107.2 bits; conditional E-value: 2e-35 Colipase-like 13 lngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 +ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090340_1 167 PNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 242 8*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 5589.62 // Query: T090340_2 [L=1270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 5117.26 // Query: T090340_3 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-10 41.1 5.5 3e-10 40.0 5.5 1.5 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.0 5.5 1.8e-14 3e-10 12 55 .. 119 162 .. 111 168 .. 0.90 Alignments for each domain: == domain 1 score: 40.0 bits; conditional E-value: 1.8e-14 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090340_3 119 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 162 566889************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 5113.23 // Query: T155906_1 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 569 (0.0348951); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 11191.40 // Query: T155906_2 [L=2621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.65 # Mc/sec: 11535.75 // Query: T155906_3 [L=2620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.71 # Mc/sec: 10556.87 // Query: T125879_1 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 4933.95 // Query: T125879_2 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.60 # Mc/sec: 6002.97 // Query: T125879_3 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.043 12.6 0.4 0.059 12.2 0.4 1.1 1 MdoG Periplasmic glucan biosynthesis protein, MdoG Domain annotation for each model (and alignments): >> MdoG Periplasmic glucan biosynthesis protein, MdoG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.4 3.6e-06 0.059 301 324 .. 139 162 .. 132 178 .. 0.88 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 3.6e-06 --TTT-GGG--EEEEEESS---EE CS MdoG 301 qDlearYekRPslwvepkgdwgkG 324 qD+e+ +e+RPs w ep++dwg+ T125879_3 139 QDMETGWEQRPSQWPEPSQDWGAE 162 8*********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6431.76 // Query: T233828_1 [L=5132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1273 (0.0780694); expected 326.1 (0.02) Passed bias filter: 342 (0.0209739); expected 326.1 (0.02) Passed Vit filter: 174 (0.0106709); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.03u 0.54s 00:00:04.57 Elapsed: 00:00:01.04 # Mc/sec: 14117.10 // Query: T233828_2 [L=5132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1499 (0.0919294); expected 326.1 (0.02) Passed bias filter: 436 (0.0267386); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.40u 0.50s 00:00:05.90 Elapsed: 00:00:01.26 # Mc/sec: 11652.21 // Query: T233828_3 [L=5132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1486 (0.0911321); expected 326.1 (0.02) Passed bias filter: 453 (0.0277812); expected 326.1 (0.02) Passed Vit filter: 245 (0.0150251); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.84u 0.54s 00:00:05.38 Elapsed: 00:00:01.20 # Mc/sec: 12234.82 // Query: T323242_1 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 14.7 20.1 1.2 9.3 4.3 3.3 2 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 14.8 0.00026 4.2 7 48 .. 270 330 .. 264 331 .. 0.90 2 ? 9.3 4.3 7.2e-05 1.2 8 39 .. 312 343 .. 307 350 .. 0.83 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 7 srrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 +rpLqa pas+qas++++++a + p ++ + l pp gL +Pss T323242_1 270 AWRPLQAqlflpaaspgppPASQQASSFGSAPAgvCRPRSFCSQALqahilPPSGLYSPSS 330 69****************************985338899**999999999999******98 PP == domain 2 score: 9.3 bits; conditional E-value: 7.2e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 + Lq + l++sgl +ps++ AsaGp+ + T323242_1 312 SQALQ-AHILPPSGLYSPSSGRRRASAGPTVaS 343 678**.9**********************9852 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 4538.32 // Query: T323242_2 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 21.2 6.4 0.00023 21.2 6.4 6.4 7 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.5 0.59 9.6e+03 35 48 .. 120 133 .. 114 135 .. 0.80 2 ? -4.0 0.0 1 1.6e+04 40 48 .. 150 158 .. 141 159 .. 0.82 3 ? -2.2 0.1 0.27 4.5e+03 20 47 .. 187 214 .. 186 216 .. 0.82 4 ? 1.3 1.2 0.022 3.6e+02 34 48 .. 264 278 .. 254 280 .. 0.63 5 ! 21.2 6.4 1.4e-08 0.00023 26 50 .] 297 321 .. 276 321 .. 0.82 6 ! 10.4 1.2 3.3e-05 0.53 3 25 .. 328 349 .. 326 366 .. 0.92 7 ? -1.9 0.0 0.22 3.7e+03 21 47 .. 682 708 .. 679 709 .. 0.78 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 0.59 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323242_2 120 GPGRPTCSSSRPTS 133 77778888888877 PP == domain 2 score: -4.0 bits; conditional E-value: 1 DUF4705 40 pagLsrPss 48 ++ L+rP+s T323242_2 150 ELDLERPTS 158 567999998 PP == domain 3 score: -2.2 bits; conditional E-value: 0.27 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs 47 ++ r++a ++ A++ p l ++L + s T323242_2 187 RCHRRAGAEPGEATVRPDLGLGSLASGS 214 577899999999**99999888887764 PP == domain 4 score: 1.3 bits; conditional E-value: 0.022 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323242_2 264 PGLCLPHGGLCRPSC 278 345556667777755 PP == domain 5 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323242_2 297 LAQLPPAFVDPEVSAAKLFRPTSCL 321 48**********************9 PP == domain 6 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 3 pAPasrrpLqapaslqasglsrp 25 pA a++ +Lq +++l+++g rp T323242_2 328 PALAGEERLQ-APLLPPRGVPRP 349 9*********.********9888 PP == domain 7 score: -1.9 bits; conditional E-value: 0.22 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPs 47 g++++ + A +G ++gL+rP+ T323242_2 682 GPGQADLTTVWACRGRREEELGLERPT 708 666666666778889999999****96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 4910.31 // Query: T323242_3 [L=1047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.014 15.5 6.8 0.014 15.5 6.8 6.0 5 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.1 0.69 1.1e+04 27 45 .. 183 198 .. 178 199 .. 0.73 2 ? 9.7 3.8 5.5e-05 0.89 25 50 .] 265 290 .. 262 290 .. 0.87 3 ? 15.5 6.8 8.4e-07 0.014 2 37 .. 316 350 .. 315 371 .. 0.80 4 ? 0.3 0.9 0.047 7.7e+02 6 14 .. 422 440 .. 420 469 .. 0.63 5 ? -2.3 0.1 0.3 4.9e+03 37 47 .. 656 666 .. 643 666 .. 0.69 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.69 DUF4705 27 aqLpvAsaGpklppagLsr 45 ++++ A +G++l+ L r T323242_3 183 LGPGDAIGGQELS---LAR 198 6778899999997...444 PP == domain 2 score: 9.7 bits; conditional E-value: 5.5e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323242_3 265 ASASRMAASAGPAVPPGCISRPTPCL 290 5666679******************8 PP == domain 3 score: 15.5 bits; conditional E-value: 8.4e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpk 37 gp Pas++p q +++ q + rp +Lp As+G T323242_3 316 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGLW 350 899********.**********************75 PP == domain 4 score: 0.3 bits; conditional E-value: 0.047 DUF4705 6 asrrpLqa..........p 14 a+rr+Lq+ p T323242_3 422 AGRRRLQDdlglqrspggP 440 7899999844444433321 PP == domain 5 score: -2.3 bits; conditional E-value: 0.3 DUF4705 37 klppagLsrPs 47 ++p++gL rP+ T323242_3 656 ERPELGLGRPT 666 56777999985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 4831.11 // Query: T228737_1 [L=9482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.03u 0.42s 00:00:03.45 Elapsed: 00:00:00.86 # Mc/sec: 31542.31 // Query: T228737_2 [L=9482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.42u 0.40s 00:00:03.82 Elapsed: 00:00:00.99 # Mc/sec: 27400.39 // Query: T228737_3 [L=9482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 22.8 0.0 3.8e-05 22.3 0.0 1.1 1 AMP-binding AMP-binding enzyme ------ inclusion threshold ------ 0.74 8.3 9.7 1.2 7.6 9.7 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> AMP-binding AMP-binding enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 4.6e-09 3.8e-05 380 421 .. 48 87 .. 44 89 .. 0.93 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 4.6e-09 T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEESSSEEE CS AMP-binding 380 nkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421 ++pe tae+ + g+ TGD +++de+Gy++++gR+ d+i+ T228737_3 48 GNPENTAEVEC--GDVCDTGDRATVDEEGYIWFLGRSHDTIN 87 69******988..68*************************97 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 9.7 0.00015 1.2 187 237 .. 5231 5278 .. 5171 5390 .. 0.62 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00015 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 187 sknkkkdkekekkkekssksesgke..eerskdeerekeadkgkdretnrate 237 s+++++++e+e+++e+++ +++g + +er+k+ +e+++ k+ +e T228737_3 5231 SRKRERERERERERERKEGRKEGRKgrKERKKEGRQERKERKRGRG-----KE 5278 3333333322222222222222211001111111111111111111.....11 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.46u 0.53s 00:00:03.99 Elapsed: 00:00:01.20 # Mc/sec: 22605.33 // Query: T018779_1 [L=6707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.43s 00:00:02.51 Elapsed: 00:00:00.85 # Mc/sec: 22573.63 // Query: T018779_2 [L=6706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-13 49.2 0.4 1.8e-12 47.1 0.1 1.8 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 0.038 6.2e+02 39 55 .. 2069 2085 .. 2067 2092 .. 0.86 2 ! 47.1 0.1 1.1e-16 1.8e-12 102 175 .. 2118 2191 .. 2110 2200 .. 0.92 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.038 BAR_3_WASP_bdg 39 eqkveafkkftkkmdes 55 +k++ fk ftkkmd+ T018779_2 2069 KSKIDGFKCFTKKMDNR 2085 579************96 PP == domain 2 score: 47.1 bits; conditional E-value: 1.1e-16 BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsse 175 +L +a+ + ++ + ++e+fa q++kDl++ +++l +G+ +n+ Dii++hk+al+kv es ++v+egk + + T018779_2 2118 ELDQAIHFSIDASHSVSELFASQSRKDLDPAMDLLVLSQGHQTNILDIIHIHKEALTKVMESRQHVAEGKTEVQ 2191 789999999***********************************************************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.02u 0.39s 00:00:02.41 Elapsed: 00:00:00.75 # Mc/sec: 25579.63 // Query: T018779_3 [L=6706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-16 60.0 0.9 1.6e-08 34.2 0.3 2.3 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.0 1.3e-09 2.2e-05 2 29 .. 2031 2058 .. 2030 2060 .. 0.91 2 ! 34.2 0.3 9.6e-13 1.6e-08 185 228 .. 2200 2243 .. 2185 2249 .. 0.93 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 1.3e-09 BAR_3_WASP_bdg 2 ekeWkqGkRkaekDelvGakflstiePe 29 e +W+qGkRkaekDe+v a+f+++++P T018779_3 2031 EIAWRQGKRKAEKDEMVSARFFLALSPP 2058 679**********************975 PP == domain 2 score: 34.2 bits; conditional E-value: 9.6e-13 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018779_3 2200 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2243 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.15u 0.42s 00:00:02.57 Elapsed: 00:00:00.94 # Mc/sec: 20409.28 // Query: T129067_1 [L=3655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.41s 00:00:01.77 Elapsed: 00:00:00.75 # Mc/sec: 13941.78 // Query: T129067_2 [L=3655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.38s 00:00:01.75 Elapsed: 00:00:00.80 # Mc/sec: 13070.42 // Query: T129067_3 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.76 # Mc/sec: 13754.57 // Query: T138407_1 [L=4187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.40s 00:00:02.04 Elapsed: 00:00:00.78 # Mc/sec: 15356.79 // Query: T138407_2 [L=4186] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4186 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:00.78 # Mc/sec: 15353.12 // Query: T138407_3 [L=4186] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.22 11.4 3.2 0.15 11.9 0.1 2.5 2 UBZ_FAAP20 Ubiquitin-binding zinc-finger Domain annotation for each model (and alignments): >> UBZ_FAAP20 Ubiquitin-binding zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 9.2e-06 0.15 5 31 .. 410 436 .. 407 438 .. 0.94 2 ? -4.1 0.6 0.92 1.5e+04 2 7 .. 2048 2053 .. 2048 2056 .. 0.81 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 9.2e-06 UBZ_FAAP20 5 PmCqkefaprlsqLDiDsHLAqCLaes 31 P+C+++f+ +++ +H +CL+ + T138407_3 410 PLCAAHFDSQFTRVKAEAHTSNCLSRV 436 9***********************976 PP == domain 2 score: -4.1 bits; conditional E-value: 0.92 UBZ_FAAP20 2 rsCPmC 7 r CP+C T138407_3 2048 RACPLC 2053 68**** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4186 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 520 (0.0318901); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.47u 0.43s 00:00:01.90 Elapsed: 00:00:00.70 # Mc/sec: 17107.76 // Query: T337167_1 [L=5405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.38s 00:00:01.93 Elapsed: 00:00:00.74 # Mc/sec: 20895.66 // Query: T337167_2 [L=5404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.35s 00:00:02.00 Elapsed: 00:00:00.74 # Mc/sec: 20891.79 // Query: T337167_3 [L=5404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 608 (0.0372869); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.92u 0.46s 00:00:03.38 Elapsed: 00:00:00.95 # Mc/sec: 16273.61 // Query: T137815_1 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.65 # Mc/sec: 9541.97 // Query: T137815_2 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.70 # Mc/sec: 8860.40 // Query: T137815_3 [L=2167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.71 # Mc/sec: 8731.58 // Query: T138123_1 [L=6915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1286 (0.0788667); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 115 (0.00705262); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.95u 0.45s 00:00:04.40 Elapsed: 00:00:00.98 # Mc/sec: 20186.37 // Query: T138123_2 [L=6915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1179 (0.0723047); expected 326.1 (0.02) Passed bias filter: 316 (0.0193794); expected 326.1 (0.02) Passed Vit filter: 107 (0.006562); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.80u 0.52s 00:00:04.32 Elapsed: 00:00:01.12 # Mc/sec: 17663.07 // Query: T138123_3 [L=6915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1084 (0.0664786); expected 326.1 (0.02) Passed bias filter: 222 (0.0136146); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.20u 0.42s 00:00:03.62 Elapsed: 00:00:00.86 # Mc/sec: 23003.07 // Query: T317736_1 [L=1542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 473 (0.0290077); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 7352.33 // Query: T317736_2 [L=1542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 6302.00 // Query: T317736_3 [L=1542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 7605.86 // Query: T051587_1 [L=4666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.63 # Mc/sec: 21188.31 // Query: T051587_2 [L=4665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.63 # Mc/sec: 21183.76 // Query: T051587_3 [L=4665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.63 # Mc/sec: 21183.76 // Query: T035719_1 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00015 21.6 3.0 22 5.1 0.1 5.1 5 Ada_Zn_binding Metal binding domain of Ada ------ inclusion threshold ------ 8.7 7.1 12.1 69 4.2 0.0 4.9 6 APP_Cu_bd Copper-binding of amyloid precursor, CuBD Domain annotation for each model (and alignments): >> Ada_Zn_binding Metal binding domain of Ada # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 0.59 4.8e+03 24 44 .. 148 168 .. 146 175 .. 0.84 2 ! 4.0 0.0 0.0055 45 7 44 .. 175 212 .. 169 219 .. 0.89 3 ! 4.5 0.0 0.0041 33 8 44 .. 220 256 .. 213 260 .. 0.88 4 ! 5.1 0.1 0.0027 22 10 44 .. 266 300 .. 258 304 .. 0.88 5 ! 4.3 0.0 0.0046 37 12 44 .. 341 373 .. 331 377 .. 0.88 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.59 TTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 24 tgiyCrpsCparlPkrenveF 44 g++ p++ a++P +e+ +F T035719_1 148 AGTVQIPTSTAQHPLQEQHSF 168 6777789*******9998777 PP == domain 2 score: 4.0 bits; conditional E-value: 0.0055 HHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 7 lardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 +++ ++ad++ + a t g+ p++ a++P +e+ +F T035719_1 175 THCRKSADSHIYSAAPTAGTAQIPTSTAQHPLQEERRF 212 567799***************************99888 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0041 HTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 8 ardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 ++ ++ad++ + + t g+ ps+ ar+P +e+ +F T035719_1 220 HCRNSADSHIYSSAPTAGTAQIPSSTARHPLQEQHRF 256 56688999999999******************99888 PP == domain 4 score: 5.1 bits; conditional E-value: 0.0027 STTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 10 daradgsFvyavkttgiyCrpsCparlPkrenveF 44 ++ad++ + t g+ p++ +r+P +e+++F T035719_1 266 RNSADSHIYSTAPTAGTAQIPTSTVRHPLQEQCRF 300 5788999999999999999***************9 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0046 TCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 12 radgsFvyavkttgiyCrpsCparlPkrenveF 44 +ad++ + t g+ p++ +r+P +e+++F T035719_1 341 SADSHIYSTAPTAGTAQIPTSTVRHPLQEQCRF 373 578888888889999999**************9 PP >> APP_Cu_bd Copper-binding of amyloid precursor, CuBD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.1 2 1.6e+04 4 18 .. 168 182 .. 167 192 .. 0.73 2 ? 0.3 0.0 0.13 1.1e+03 3 20 .. 211 228 .. 210 246 .. 0.81 3 ? -2.7 0.0 1.2 9.7e+03 3 18 .. 255 270 .. 254 281 .. 0.79 4 ? 4.2 0.0 0.0084 69 1 22 [. 297 318 .. 297 335 .. 0.81 5 ? 2.4 0.1 0.03 2.4e+02 1 16 [. 370 385 .. 370 391 .. 0.90 6 ? 4.1 0.2 0.0088 72 1 24 [. 399 422 .. 399 437 .. 0.81 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 2 EEEEE-SS--B-HHH CS APP_Cu_bd 4 FdhvermdkCkdeqe 18 F h + + +C+++++ T035719_1 168 FPHLQCSTHCRKSAD 182 788888888887655 PP == domain 2 score: 0.3 bits; conditional E-value: 0.13 EEEEEE-SS--B-HHHHH CS APP_Cu_bd 3 kFdhvermdkCkdeqeWk 20 +F h +++ +C+++++ + T035719_1 211 RFPHLQNSTHCRNSADSH 228 799********9987655 PP == domain 3 score: -2.7 bits; conditional E-value: 1.2 EEEEEE-SS--B-HHH CS APP_Cu_bd 3 kFdhvermdkCkdeqe 18 +F h + +C+++++ T035719_1 255 RFPHLQYGTHCRNSAD 270 6999999999998765 PP == domain 4 score: 4.2 bits; conditional E-value: 0.0084 X-EEEEEE-SS--B-HHHHHHH CS APP_Cu_bd 1 kCkFdhvermdkCkdeqeWkev 22 +C+F h + +C+++++ + T035719_1 297 QCRFPHLQYGTHCRNSTDSHIY 318 6************998876655 PP == domain 5 score: 2.4 bits; conditional E-value: 0.03 X-EEEEEE-SS--B-H CS APP_Cu_bd 1 kCkFdhvermdkCkde 16 +C+F h + +C+++ T035719_1 370 QCRFPHLQYGTHCRNS 385 6************986 PP == domain 6 score: 4.1 bits; conditional E-value: 0.0088 X-EEEEEE-SS--B-HHHHHHHHH CS APP_Cu_bd 1 kCkFdhvermdkCkdeqeWkevak 24 +C+F h + + +C+++++ + ++ T035719_1 399 QCRFPHLQCSTHCRNSADSHIYST 422 6************99887665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.55 # Mc/sec: 3495.41 // Query: T035719_2 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.03 14.2 2.4 64 3.5 0.0 4.9 6 Ada_Zn_binding Metal binding domain of Ada 0.47 10.4 3.0 2.3 8.2 0.1 3.1 4 YjbT Uncharacterised protein family Domain annotation for each model (and alignments): >> Ada_Zn_binding Metal binding domain of Ada # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 0.76 6.2e+03 33 44 .. 142 153 .. 140 159 .. 0.83 2 ? 3.5 0.0 0.0078 64 8 44 .. 205 241 .. 199 246 .. 0.88 3 ? -0.8 0.0 0.18 1.4e+03 12 44 .. 253 285 .. 244 289 .. 0.78 4 ? 2.5 0.0 0.017 1.4e+02 9 44 .. 294 329 .. 287 335 .. 0.87 5 ? -2.3 0.0 0.51 4.2e+03 11 39 .. 369 397 .. 365 399 .. 0.79 6 ? 3.0 0.0 0.011 92 12 44 .. 399 431 .. 391 439 .. 0.91 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.76 SSS-S-SCCEEE CS Ada_Zn_binding 33 parlPkrenveF 44 a++P +e+++F T035719_2 142 TAHHPLQEQCRF 153 6889******99 PP == domain 2 score: 3.5 bits; conditional E-value: 0.0078 HTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 8 ardaradgsFvyavkttgiyCrpsCparlPkrenveF 44 ++ ++ad++ + +t g++ p++ a++P +e+ +F T035719_2 205 HCRKSADSHIYRTAHTAGTVQIPTSTAQHPLQEQRRF 241 667899*************************998877 PP == domain 3 score: -0.8 bits; conditional E-value: 0.18 TCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 12 radgsFvyavkttgiyCrpsCparlPkrenveF 44 + d++ + t g+ p++ a++P +e+ +F T035719_2 253 STDSHIYSTAPTAGTAQIPTSTAQHPLQEQHRF 285 566667777778888889999999999998887 PP == domain 4 score: 2.5 bits; conditional E-value: 0.017 TSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 9 rdaradgsFvyavkttgiyCrpsCparlPkrenveF 44 + ++ad++ + t g++ p++ +r+P +e+ +F T035719_2 294 CRNSADSHIYSTAPTAGTVQIPTSTVRHPLQEQRRF 329 56789999999999*****************99887 PP == domain 5 score: -2.3 bits; conditional E-value: 0.51 TTCCTTBEEEETTTTEEE-TT-SSS-S-S CS Ada_Zn_binding 11 aradgsFvyavkttgiyCrpsCparlPkr 39 ++ad++ + t g+ ps+ a++P r T035719_2 369 NSADSHIYSTAPTAGTAQIPSSTAQHPLR 397 57788888888888999999999999987 PP == domain 6 score: 3.0 bits; conditional E-value: 0.011 TCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEE CS Ada_Zn_binding 12 radgsFvyavkttgiyCrpsCparlPkrenveF 44 +ad++ + a t g++ p++ a++ +e+++F T035719_2 399 SADSHIYSAAPTAGTVQIPTSTAQHTLQEQCSF 431 689999*************************99 PP >> YjbT Uncharacterised protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.1 0.00028 2.3 32 90 .. 174 231 .. 161 233 .. 0.84 2 ? 0.8 0.1 0.054 4.4e+02 33 86 .. 263 315 .. 253 321 .. 0.78 3 ? -1.9 0.0 0.38 3.1e+03 34 60 .. 308 333 .. 298 335 .. 0.80 4 ? -3.0 0.1 0.85 7e+03 40 89 .. 343 391 .. 341 394 .. 0.69 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00028 YjbT 32 lgtadkadlpqsnvsspmmaqslrqpdlqpistdrktecfrlytpdrkpgvncvpdgst 90 ta +a++p s v p+ q r p lq + rk+ +y g +p ++ T035719_2 174 APTAGRAQIPTSTVQHPLQEQ-RRFPHLQLSTHCRKSADSHIYRTAHTAGTVQIPTSTA 231 45999************9877.599****99999**99999999999999888887665 PP == domain 2 score: 0.8 bits; conditional E-value: 0.054 YjbT 33 gtadkadlpqsnvsspmmaqslrqpdlqpistdrktecfrlytpdrkpgvncvp 86 ta a++p s p+ q r p lq + r++ +y+ g +p T035719_2 263 PTAGTAQIPTSTAQHPLQEQ-HRFPHLQYGTHCRNSADSHIYSTAPTAGTVQIP 315 588999**********9877.599999998888888877888777666666666 PP == domain 3 score: -1.9 bits; conditional E-value: 0.38 YjbT 34 tadkadlpqsnvsspmmaqslrqpdlq 60 ta ++p s v p+ q r p lq T035719_2 308 TAGTVQIPTSTVRHPLQEQR-RFPHLQ 333 7888899*******998774.777776 PP == domain 4 score: -3.0 bits; conditional E-value: 0.85 YjbT 40 lpqsnvsspmmaqslrqpdlqpistdrktecfrlytpdrkpgvncvpdgs 89 +p s p+ q r p lq + r++ +y+ g +p + T035719_2 343 IPTSTAQHPLQEQ-HRFPHLQYGTHCRNSADSHIYSTAPTAGTAQIPSST 391 5667777776655.588888888888887777788777777777777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3697.07 // Query: T035719_3 [L=671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 3999.20 // Query: T099945_1 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 4326.28 // Query: T099945_2 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 4156.62 // Query: T099945_3 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4239.75 // Query: T155283_1 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.093 12.8 3.3 2.4 8.2 0.6 2.7 2 Flu_C_NS2 Influenza C non-structural protein (NS2) Domain annotation for each model (and alignments): >> Flu_C_NS2 Influenza C non-structural protein (NS2) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.1 0.0027 44 22 39 .. 151 168 .. 142 183 .. 0.82 2 ? 8.2 0.6 0.00015 2.4 23 43 .. 261 281 .. 254 285 .. 0.91 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0027 Flu_C_NS2 22 dtCtemqvekmktstkar 39 tCt m m t t + T155283_1 151 RTCTHMHTSYMHTRTHTN 168 59***********99765 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00015 Flu_C_NS2 23 tCtemqvekmktstkarlkte 43 tCt m m t t +r++t T155283_1 261 TCTHMYTSYMHTRTHTRMHTH 281 9*****************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 768 (0.0470992); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2185.67 // Query: T155283_2 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0081 15.7 0.0 0.48 10.1 0.0 4.0 7 DUF4408 Domain of unknown function (DUF4408) ------ inclusion threshold ------ 5.7 6.6 11.1 13 5.5 1.4 3.9 4 DUF3237 Protein of unknown function (DUF3237) Domain annotation for each model (and alignments): >> DUF4408 Domain of unknown function (DUF4408) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.23 1.9e+03 12 18 .. 119 125 .. 99 129 .. 0.80 2 ? -3.5 0.0 1 8.3e+03 12 17 .. 133 138 .. 133 139 .. 0.89 3 ? -1.4 0.0 0.23 1.9e+03 13 20 .. 210 217 .. 204 219 .. 0.84 4 ? -2.4 0.0 0.47 3.9e+03 13 20 .. 229 236 .. 227 238 .. 0.81 5 ? -3.5 0.0 1 8.3e+03 12 17 .. 242 247 .. 242 248 .. 0.89 6 ? -2.9 0.0 0.65 5.3e+03 1 8 [. 282 289 .. 282 290 .. 0.88 7 ! 10.1 0.0 5.9e-05 0.48 1 18 [. 337 372 .. 337 374 .. 0.92 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.23 DUF4408 12 kPpyLFv 18 P++ +v T155283_2 119 HPTCIYV 125 69***99 PP == domain 2 score: -3.5 bits; conditional E-value: 1 DUF4408 12 kPpyLF 17 +P++ + T155283_2 133 TPTCIY 138 8***99 PP == domain 3 score: -1.4 bits; conditional E-value: 0.23 DUF4408 13 PpyLFvvl 20 P++ +v + T155283_2 210 PTCIYVHT 217 9****965 PP == domain 4 score: -2.4 bits; conditional E-value: 0.47 DUF4408 13 PpyLFvvl 20 P++ +v + T155283_2 229 PTCMYVHT 236 9****965 PP == domain 5 score: -3.5 bits; conditional E-value: 1 DUF4408 12 kPpyLF 17 +P++ + T155283_2 242 TPTCIY 247 8***99 PP == domain 6 score: -2.9 bits; conditional E-value: 0.65 DUF4408 1 Psvysslv 8 P++y++++ T155283_2 282 PHAYTCTH 289 9*****97 PP == domain 7 score: 10.1 bits; conditional E-value: 5.9e-05 DUF4408 1 Psvysslvs..................wlkPpyLFv 18 P++y+++++ + kPp+LF+ T155283_2 337 PHAYTCTHMgtcthmhtealthtgthaYTKPPCLFL 372 899999999999999999999999999********8 PP >> DUF3237 Protein of unknown function (DUF3237) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.2 0.033 2.7e+02 63 94 .. 106 140 .. 93 174 .. 0.61 2 ? 3.2 0.5 0.0082 66 62 115 .. 159 211 .. 138 212 .. 0.59 3 ? 5.5 1.4 0.0016 13 64 91 .. 233 260 .. 177 274 .. 0.65 4 ? -1.0 0.1 0.15 1.3e+03 60 81 .. 287 311 .. 274 358 .. 0.59 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.033 EEEEEEEEE...TTS-EEEEEEEEEEE--GGGHHH CS DUF3237 63 ldaryvlkt...ddgaliyirytGvvtldeevlav 94 ++a++ + t +++iy+ ++G + + + T155283_2 106 IHAHACMHT*thAHPTCIYVDTHGCTHTPTCIYMH 140 55666665554344678888888877765544444 PP == domain 2 score: 3.2 bits; conditional E-value: 0.0082 EEEEEEEEEETT.S-EEEEEEEEEEE--GGGHHHHHHT-..---GGG-EEEEEEE CS DUF3237 62 rldaryvlktdd.galiyirytGvvtldeevlavlgggekkesspteygfrthpt 115 + ++++ + ++ +++iy++++G + + + + + ++ + ++ thpt T155283_2 159 HTCTHAHTRMHThPTCIYMHTHGHTWMHTRTCTHMYTSY-MHT-RAHTQMHTHPT 211 333444444433479********9999766666655533.333.34455666665 PP == domain 3 score: 5.5 bits; conditional E-value: 0.0016 EEEEEEEETTS-EEEEEEEEEEE--GGG CS DUF3237 64 daryvlktddgaliyirytGvvtldeev 91 ++ + t+++++iy++++G + +v T155283_2 233 YVHTHGHTHTPTCIYMHTHGHTWMHTHV 260 3455556677777777777776666555 PP == domain 4 score: -1.0 bits; conditional E-value: 0.15 -EEEEEEEEEEETTS-...EEEEEE CS DUF3237 60 tarldaryvlktddga...liyiry 81 +++ da+ + t++++ +i++ + T155283_2 287 CTHMDAHTHGHTHTPHactCIHMDT 311 5677777777777754344555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 825 (0.0505949); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2179.95 // Query: T155283_3 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 850 (0.0521281); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2270.78 // Query: T227458_1 [L=2507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.53 # Mc/sec: 13532.27 // Query: T227458_2 [L=2507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 13040.18 // Query: T227458_3 [L=2506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.54 # Mc/sec: 13276.37 // Query: T342317_1 [L=1735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 9545.27 // Query: T342317_2 [L=1735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 9927.08 // Query: T342317_3 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 9726.82 // Query: T060422_1 [L=1181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1892 (0.116031); expected 326.1 (0.02) Passed bias filter: 513 (0.0314608); expected 326.1 (0.02) Passed Vit filter: 304 (0.0186434); expected 16.3 (0.001) Passed Fwd filter: 87 (0.00533546); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.03u 0.38s 00:00:02.40 Elapsed: 00:00:00.69 # Mc/sec: 4896.58 // Query: T060422_2 [L=1181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2193 (0.13449); expected 326.1 (0.02) Passed bias filter: 566 (0.0347111); expected 326.1 (0.02) Passed Vit filter: 402 (0.0246535); expected 16.3 (0.001) Passed Fwd filter: 103 (0.00631669); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.18u 0.36s 00:00:02.54 Elapsed: 00:00:00.66 # Mc/sec: 5119.15 // Query: T060422_3 [L=1181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1892 (0.116031); expected 326.1 (0.02) Passed bias filter: 542 (0.0332393); expected 326.1 (0.02) Passed Vit filter: 389 (0.0238562); expected 16.3 (0.001) Passed Fwd filter: 125 (0.00766589); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.46s 00:00:03.15 Elapsed: 00:00:00.79 # Mc/sec: 4276.76 // Query: T004143_1 [L=1513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 722 (0.0442782); expected 326.1 (0.02) Passed bias filter: 341 (0.0209125); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.52 # Mc/sec: 8323.91 // Query: T004143_2 [L=1512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.2 6.8 14.8 0.33 11.1 7.4 2.6 2 KxDL Uncharacterized conserved protein Domain annotation for each model (and alignments): >> KxDL Uncharacterized conserved protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.7 0.32 5.3e+03 10 29 .. 109 128 .. 105 148 .. 0.62 2 ? 11.1 7.4 2e-05 0.33 9 77 .. 303 371 .. 299 374 .. 0.92 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.32 KxDL 10 dldeilalQaqtsgrlnkkn 29 +++ +l +Qaq+ +l +k T004143_2 109 RVEPALEKQAQLEEQLRDKV 128 56667788888888777763 PP == domain 2 score: 11.1 bits; conditional E-value: 2e-05 KxDL 9 edldeilalQaqtsgrlnkkneeLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkak 77 ++l ++l+ +q +l ++ e+L+ ++++q++ +l+++ ++ ++ +v+++Le +++++++l+ k T004143_2 303 SNLVHSLQVAQQQAEELPQEREKLQVAQEELQRQRDRLEEEQEEAVQNGARVRRELERSHRQLEQLEGK 371 677788888889999**************************************************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1174 (0.071998); expected 326.1 (0.02) Passed bias filter: 368 (0.0225684); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 7457.89 // Query: T004143_3 [L=1512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 8010.32 // Query: T002395_1 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 7278.61 // Query: T002395_2 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.47 # Mc/sec: 8052.93 // Query: T002395_3 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 5406.97 // Query: T352854_1 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 2607.58 // Query: T352854_2 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2840.40 // Query: T352854_3 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 2742.45 // Query: T316994_1 [L=3444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.078 12.7 0.0 0.13 12.0 0.0 1.2 1 Tetraspannin Tetraspanin family Domain annotation for each model (and alignments): >> Tetraspannin Tetraspanin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.8e-06 0.13 37 103 .. 3199 3305 .. 3165 3363 .. 0.69 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.8e-06 ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH............................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF Tetraspannin 37 esaedpailavllivvGvllfllgflGcigalkenkcllltfsllllvlfllelaagilafvftdk............................. 102 + + ++ ++++i + +++ ++++ ++ + ++ + tf++++++ +++ +++i++++ft+ T316994_1 3199 HLITTITTTSTIIITITTITITTTIITIFTMTIVIIITIITFITIMIITIIMATTITIIVITFTSPlpplpssplsshhlhhlhhhhhhlhhhhh 3293 344444555566899999**********************************************9988888888888877777777766666555 PP ............ CS ...........x RF Tetraspannin 103 ...........a 103 + T316994_1 3294 hlhhhhhhhhhH 3305 555444433330 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3444 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1461 (0.0895989); expected 326.1 (0.02) Passed bias filter: 290 (0.0177849); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.92u 0.45s 00:00:02.37 Elapsed: 00:00:00.81 # Mc/sec: 12163.83 // Query: T316994_2 [L=3443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1247 (0.0764749); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.36s 00:00:02.19 Elapsed: 00:00:00.71 # Mc/sec: 13873.01 // Query: T316994_3 [L=3443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 4.7 15.4 7.2 4.2 15.4 1.1 1 V_ATPase_I V-type ATPase 116kDa subunit family Domain annotation for each model (and alignments): >> V_ATPase_I V-type ATPase 116kDa subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 15.4 0.00044 7.2 578 714 .. 3145 3274 .. 3113 3279 .. 0.56 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.00044 V_ATPase_I 578 kapsllntlinmflspgkv....keeelyegqetvqvvLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeeeee 670 + +++++i m s+ + + ++ +++ ++ q + ++++++ + ++ + P + + +h +++ +++++++++ +++++ ++ ++ + T316994_3 3145 TIMVIITIIITMTSSSPSSpthlHLHHHHHHHHIHQLITFIITIIIITIFTISSPHHHHHHHFHHHYHHHHHHHHH---NHHHHLHH------DHCH 3232 3455778888888777776555544456667888899999999999999999999988777776655554433222...11112222......2222 PP V_ATPase_I 671 eeeeeeeeeeeeeeeeeeeeeefdfgevfihqvIhtIEfvLgci 714 +++ ++ +++++++++ +++++++ +h +I tI f+ +i T316994_3 3233 HHHYHHLHHHHDHHHHYGHHHHHHCH--HLHITITTITFITIVI 3274 22223333333333444444444444..4566788888876555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1347 (0.0826076); expected 326.1 (0.02) Passed bias filter: 362 (0.0222004); expected 326.1 (0.02) Passed Vit filter: 93 (0.00570342); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.34u 0.42s 00:00:02.76 Elapsed: 00:00:00.89 # Mc/sec: 11067.23 // Query: T184600_1 [L=647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3701.91 // Query: T184600_2 [L=647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.59 # Mc/sec: 3137.22 // Query: T184600_3 [L=646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 2933.49 // Query: T039847_1 [L=2405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-20 71.8 0.0 1e-19 71.0 0.0 1.3 1 RNase_H RNase H 4.7e-10 39.6 0.0 8.7e-10 38.7 0.0 1.4 1 rve Integrase core domain 1.4e-06 28.3 0.4 3e-06 27.3 0.4 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.0 0.0 1.9e-23 1e-19 5 142 .. 1331 1472 .. 1328 1473 .. 0.84 Alignments for each domain: == domain 1 score: 71.0 bits; conditional E-value: 1.9e-23 EEEEEEEEECT.TTEEEEEE.EECTT..E.EEEEEEC.CCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTS CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegar.nisaple.eaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseq 95 +++DGs++ n +ge+gag+ v+ + +++l+ + +++++aEL+A+i aL+ + ++++vn+ytDS Y++ + +q vh++ k+++ +s + T039847_1 1331 ELHVDGSSFINpQGERGAGCaVVTLD--TvVEARSLP*G-TSAQKAELIALIRALElS--EGKTVNVYTDSPYAFLT-LQ-VHGT*yKEKGL-LNSGG 1420 589********99999****666766..31333445555.89**************55..9**************94.33.8**9*777777.77788 PP SBHTT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 96 kpvkn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 k++k +e+ +ll+++ k++kv+++h++gH+ + gN aD A++aa T039847_1 1421 KDIKYqQEILQLLEAVWKPHKVSVMHCRGHQRAstlvGLGNSLADPEARKAA 1472 89*9889***********************666568877**********997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.0 1.6e-13 8.7e-10 62 117 .. 1616 1670 .. 1611 1672 .. 0.94 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 1.6e-13 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++g p+r+ sDng+++++ +++ ++ lgi+++++++++pq GkvE +nrt+k+ T039847_1 1616 RFGL-PLRIGSDNGPAFVADLIQKTAKVLGITWKLHAAYQPQNSGKVEWMNRTIKN 1670 5666.9************************************************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.4 5.4e-10 3e-06 1 38 [. 1537 1574 .. 1537 1574 .. 1.00 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 5.4e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 Hk+tHlG++ l++ll ++++ ++++ ++ V+++C++C T039847_1 1537 HKTTHLGQESLEKLLGWYFYISHLSAPAKIVTQQCVTC 1574 ************************************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.70 # Mc/sec: 9828.99 // Query: T039847_2 [L=2405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-49 168.2 0.6 2.4e-49 167.6 0.6 1.2 1 Gag_p30 Gag P30 core shell protein 8.4e-17 60.9 0.1 1.8e-16 59.9 0.1 1.5 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 167.6 0.6 3e-53 2.4e-49 4 192 .. 398 585 .. 396 593 .. 0.92 Alignments for each domain: == domain 1 score: 167.6 bits; conditional E-value: 3e-53 Gag_p30 4 pfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpn.evdeafpltrpdwdyetaegr 102 pf+++dl nwk nps++e+pq+l l+++i+ th+ptw dc qll l+ t+er rvl a k ++ + q p+ v + +p t p+wd + + + T039847_2 398 PFTSADLLNWK--NPSYTEKPQALIDLLQTIIQTHNPTWADCHQLLMFLFNTDERWRVLQAATKWLEEHAPADYQNPQgYVRTPLPGTNPQWDPNERKDK 495 9*********9..7**************************************************99877766666654369999*********8876665 PP Gag_p30 103 eslkl..yrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqe 192 + +l yr++ll gl+ a++ tn++kv ev+qgkeespa f erl eayr+ytp+dp++ ++++ + ++++ qsa +ir+klq+ g+ + T039847_2 496 Q--RLn*YREALLEGLKRGAQKATNVTKVSEVIQGKEESPAQFYERLCEAYRMYTPFDPDSLKNQCMINMALLSQSAENIRRKLQKQAGFAG 585 5..89999*****************************************************************************9888765 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.9 0.1 2.2e-20 1.8e-16 24 94 .. 195 262 .. 175 262 .. 0.89 Alignments for each domain: == domain 1 score: 59.9 bits; conditional E-value: 2.2e-20 HTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--T CS Gag_MA 24 nlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPp 94 + +v + +k +t C+ +Wptl+vgWP eG+ d ++++kv +kv + G+ Dq pYi tW +Lv dPP+ T039847_2 195 DYGVTMTPGKHRTSCEIDWPTLEVGWPSEGSLDRSLVSKVWHKVTGK---GYLDQFPYIDTWLQLVLDPPQ 262 568889999***********************************966...********************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:00.69 # Mc/sec: 9971.44 // Query: T039847_3 [L=2405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-23 81.3 0.0 1.1e-22 80.5 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 8.5e-13 48.3 0.0 1.4e-12 47.6 0.0 1.3 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.5 0.0 1.4e-26 1.1e-22 1 222 [] 928 1100 .. 928 1100 .. 0.91 Alignments for each domain: == domain 1 score: 80.5 bits; conditional E-value: 1.4e-26 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 +pK+g+++yR++ d++++n++++ l++ ++ + ++ ++ ++++ lDlk+aF+s++l+++++kl+af+ + T039847_3 928 VPKPGTKDYRLV----QDLRLVNQATVT---------LHPTVSNPCTLLGL------------LPAEDRWFTCLDLKDAFFSIRLARESQKLFAFQWE 1000 69*********7....7***********.........88888888888444............45788****************************** PP .........................TEEEEE..SB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryek..kglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkes 194 + es +++ ++lpqG++ SP++f ++ + l+e+ +r+ g++ll+Y+DD+l+ + + + + ++a+ ++l+++ T039847_3 1001 DL---------------------ESVITTQYt*TRLPQGFKDSPTIFGEALARDLQEFPTRHLGCVLLQYVDDLLLGHPTAVGCAKGMDALLRHLEDC 1077 33.....................445566664669*************************************************************** PP T--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 195 glkinpeKtklvlfsgkseevkyLGvtl 222 g+k++++K ++ +++v+yLG+t+ T039847_3 1078 GYKVSKKKAQIS-----RQQVRYLGFTI 1100 ************.....9********97 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.6 0.0 1.7e-16 1.4e-12 3 100 .. 716 808 .. 714 809 .. 0.96 Alignments for each domain: == domain 1 score: 47.6 bits; conditional E-value: 1.7e-16 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++P++++++ggk i +llD G +++v++ P + kk+ ++ +g ++++ ++ ++ +k+ + ++l +p++p++llGrdlL+kl +++ T039847_3 716 KEPMVRMIVGGKDIDFLLDAGSEHSVVTAPVTPLS---KKTIDIIRAMGVSAKQAFCWPRTRAVGGHKVIH--QFLYMPDCPLPLLGRDLLSKLRATI 808 68*********************************...99999999999999*******************..*********************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2405 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.71 # Mc/sec: 9690.56 // Query: T259818_1 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 4138.98 // Query: T259818_2 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.57 # Mc/sec: 4419.49 // Query: T259818_3 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.70 # Mc/sec: 3661.86 // Query: T302159_1 [L=3377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.83 # Mc/sec: 11639.79 // Query: T302159_2 [L=3377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.82 # Mc/sec: 11781.74 // Query: T302159_3 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.37s 00:00:01.75 Elapsed: 00:00:00.75 # Mc/sec: 12877.55 // Query: T261116_1 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 2720.49 // Query: T261116_2 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.65 # Mc/sec: 2218.24 // Query: T261116_3 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-11 42.0 0.0 9.7e-11 41.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.5 0.0 6e-15 9.7e-11 1 141 [. 105 201 .. 105 203 .. 0.91 Alignments for each domain: == domain 1 score: 41.5 bits; conditional E-value: 6e-15 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+ +++yRp+ d+++l +++ +++ p+ + ++ ++ +++ +Dlk+aF+ ++l+ + +kl+af+ +++ T261116_3 105 VPKPRTKDYRPV----QDLRLLHQATLT---------FPPTVPNPSTLLGL------------LPAEDSWFTCFDLKDAFFPIRLAPERQKLFAFQWEDP 179 69999******7....7***********.........99999999999555............56788******************************88 PP .......................TEEEEESB--ST-TTHHH CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPl 141 ++ +++y+++glpqG+++SP T261116_3 180 -------------------ESGVTTQYTWTGLPQGFKNSPH 201 ...................34569****************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.63 # Mc/sec: 2288.66 // Query: T325351_1 [L=1918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.60 # Mc/sec: 9145.12 // Query: T325351_2 [L=1917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-19 70.2 0.8 4.6e-13 49.0 0.1 2.2 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.1 3.1e-08 0.0005 31 67 .. 468 504 .. 467 507 .. 0.87 2 ! 49.0 0.1 2.8e-17 4.6e-13 122 210 .. 559 647 .. 556 648 .. 0.98 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.1e-08 Gag_p30 31 iesillthqptwddcqqllqtlltteerqrvlleark 67 + +i+ th ptw d q ll+++lt++er+ vl + k T325351_2 468 VTTIFATHCPTWADVQALLNIMLTADERRLVLDKGEK 504 567999**********************998866555 PP == domain 2 score: 49.0 bits; conditional E-value: 2.8e-17 Gag_p30 122 rptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 rp l kv+e+ q ++e p+ f+e++ + yr+yt dp+dp++ v +++ qsa+ +k + +eg +++ ++l+ a +vyn re T325351_2 559 RPKSLNKVQELQQKPNEDPSEFMEQICQMYRKYTDLDPQDPKNVRMVNMTLTRQSAPRHQKEVPNVEGAMGMNASQLIDIAFNVYNSRE 647 899***********************************************************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 7616.96 // Query: T325351_3 [L=1917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-15 56.9 0.0 6.3e-15 55.2 0.0 1.7 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0048 16.3 0.2 0.0081 15.6 0.2 1.3 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.21 1.7e+03 126 141 .. 908 923 .. 900 925 .. 0.85 2 ! 55.2 0.0 7.7e-19 6.3e-15 59 186 .. 1184 1288 .. 1160 1307 .. 0.86 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.21 EEEESB--ST-TTHHH CS RVT_1 126 ryekkglpqGsvlSPl 141 +++ + l+qG++lSP T325351_3 908 LFSFCFLRQGLALSPR 923 577899*********6 PP == domain 2 score: 55.2 bits; conditional E-value: 7.7e-19 ...HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS RVT_1 59 lkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrk 156 + + + ++++ lDlk+aF+ +p +++++ l++++ p++ +++++y++++lpqG+++SP++f ++ + lr+l+ T325351_3 1184 TIFIFLSRDHEWFRVLDLKDAFFCIPANAESQLLFEWTDPET---------------------ATQFQYCWTVLPQGFKNSPTVFGEALAQNLRDLQL 1260 5556677889******************************43.....................56********************************* PP .....TEEECTTEEEEEESSHHHHHHHHHH CS RVT_1 157 rakgvtllrYaDDililskskeelqellea 186 + + +llrYaDD+li+s+ k+e+q + T325351_3 1261 E--NGVLLRYADDLLISSSLKQECQDNTVK 1288 6..89**************99998876555 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.2 9.9e-07 0.0081 4 29 .. 441 466 .. 440 472 .. 0.93 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 9.9e-07 Gag_p30 4 pfsasdlynwktnnpsfsedpqklta 29 pf +sdl nwk+ ps+ e+pqk+t+ T325351_3 441 PFPTSDLLNWKSSSPSYREEPQKMTE 466 9***********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 8185.39 // Query: T124769_1 [L=418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 2026.83 // Query: T124769_2 [L=418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 2097.94 // Query: T124769_3 [L=417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 1988.28 // Query: T308580_1 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 4238.43 // Query: T308580_2 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 489 (0.029989); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 4304.66 // Query: T308580_3 [L=962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00027 21.3 0.1 0.00046 20.5 0.1 1.3 1 Rhodanese Rhodanese-like domain ------ inclusion threshold ------ 4.5 7.6 12.0 8.3 6.7 12.0 1.3 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Rhodanese Rhodanese-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.1 5.7e-08 0.00046 2 56 .. 136 192 .. 135 200 .. 0.69 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 5.7e-08 Rhodanese 2 akelkellekgkvallDvRppee...YekghIpgavnv.skdtlsrakkseapllelpe 56 kelk+ll+++++ l+DvR+ +e Y+k Ip+++nv + + ++++++e++ T308580_3 136 YKELKNLLNSKNIMLIDVREIWEileYQK--IPESINVpLDEVGEALQMNPRDFKEKYN 192 69**********99*****8888644655..*******433333344445555555444 PP >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 12.0 0.001 8.3 10 35 .. 237 262 .. 235 264 .. 0.91 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.001 Wbp11 10 aRKaqrkkelkKnKkerqkareakla 35 RK++r+ke kK+Kker+k+ + kla T308580_3 237 ERKKERRKERKKGKKERKKETTVKLA 262 6******************9999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 651 (0.039924); expected 326.1 (0.02) Passed bias filter: 333 (0.0204219); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.76 # Mc/sec: 3621.21 // Query: T226573_1 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 3335.84 // Query: T226573_2 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2996.60 // Query: T226573_3 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 2719.99 // Query: T069804_1 [L=241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 1231.18 // Query: T069804_2 [L=241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 1112.03 // Query: T069804_3 [L=240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-07 29.7 0.0 8.9e-07 29.0 0.0 1.4 1 fn3 Fibronectin type III domain ------ inclusion threshold ------ 0.015 15.5 0.0 0.027 14.7 0.0 1.4 1 Ig_2 Immunoglobulin domain 0.028 14.9 0.1 0.085 13.4 0.0 1.8 2 Ig_3 Immunoglobulin domain Domain annotation for each model (and alignments): >> fn3 Fibronectin type III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.0 1.6e-10 8.9e-07 1 85 [] 96 187 .. 96 187 .. 0.86 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 1.6e-10 TSBSEEEEEEE....TTSEEEEEEE-CSSSSSTECEEEEEEEETTSSS.....TEEEEEECSTCSEEEEESSSTTEEEEEEEEEEETTEEEEEE CS fn3 1 saPsnlsvsev....tstsltvsWeppkdgggpitgYeveyrekgsee.....ewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 +aP n+++s ++++++W g g++tg+ v+ + + + e+ ++ + ++ l gL pg Y +r+ a+n+++ g++s T069804_3 96 PAPPNVTISRLtygrHRREVQLQWAIL--GPGNLTGFLVQRKASALGPgagawETAASDIEPESRGRRLGGLDPGVLYAFRILALNHHTAGHPS 187 6899999999977777899********..9***********777666677876555555777777**************************998 PP >> Ig_2 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 5e-06 0.027 11 64 .. 19 79 .. 10 104 .. 0.81 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 5e-06 Ig_2 11 vtegspv.tLtCsas.gnpppkyqwykgg.eainssqn...ffinavsaedsgt.YtCras 64 t g+ + L+C+++ g pp+++ w + +++ s + +++++++++ +g+ +tCr + T069804_3 19 ATMGDQFiMLSCEWPgGEPPATLGWLDEQqQPLGGSSSsmaVHLLQAQEDLAGReFTCRGT 79 5556655378*****667779****9777699995444466788**************975 PP >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 1.6e-05 0.085 16 64 .. 22 64 .. 13 80 .. 0.59 2 ? -1.6 0.0 0.73 3.9e+03 23 38 .. 89 106 .. 88 120 .. 0.68 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.6e-05 TS.-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEEESS CS Ig_3 16 ge.svtLtCeaegnppp.titWykngkklssnstsssissegssssLtisn 64 g+ ++L+Ce+ g+ pp t+ W+ ++++ + + ++ss +++ + T069804_3 22 GDqFIMLSCEWPGGEPPaTLGWLDEQQQ--P---L---GGSSSSMAVHLLQ 64 442567*****6666666*******995..3...2...1122333344444 PP == domain 2 score: -1.6 bits; conditional E-value: 0.73 ---.EEES--.EEEEEE. CS Ig_3 23 Cea.egnppp.titWykn 38 C+ g+p+p ++t ++ T069804_3 89 CHLqLGYPAPpNVTISRL 106 555557888888876664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 1163.73 // Query: T269172_1 [L=1603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 7055.25 // Query: T269172_2 [L=1603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 6459.03 // Query: T269172_3 [L=1602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 6547.21 // Query: T091122_1 [L=2789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.81 # Mc/sec: 9850.44 // Query: T091122_2 [L=2789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-07 30.9 0.0 2.6e-07 30.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 1.6e-11 2.6e-07 134 176 .. 2731 2782 .. 2701 2784 .. 0.88 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 1.6e-11 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 qG++lSPllfn++++ l r +r++ ++v+l+++aDD+ ++ ++ T091122_2 2731 QGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMNVHLEN 2782 ***********************99**********************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.83 # Mc/sec: 9613.08 // Query: T091122_3 [L=2788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.75 # Mc/sec: 10634.66 // Query: T137740_1 [L=2182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.89 # Mc/sec: 7013.86 // Query: T137740_2 [L=2182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.59 # Mc/sec: 10580.22 // Query: T137740_3 [L=2181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.68 # Mc/sec: 9175.69 // Query: T292099_1 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 12231.30 // Query: T292099_2 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-43 146.9 2.3 8.3e-43 146.3 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.3 2.3 5.1e-47 8.3e-43 1 210 [. 1721 1949 .. 1721 1965 .. 0.94 Alignments for each domain: == domain 1 score: 146.3 bits; conditional E-value: 5.1e-47 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl++++ k+lnk++a + ++++kl++++q+gf p + + ++ +++++++++k k+++++++D +ka d+++ + T292099_2 1721 IPKPGrdttkKENFRPISLMNINAKILNKILAk*iQ---QHVKKLIHHDQVGFIPAMQDWFNIcksiNVIQHINRAKDKNHMIISIDAEKASDKIQQP 1815 899999999999******************964434...79999************9999999***99****************************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l++f+++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T292099_2 1816 FMLKTLNKFGIDGMYLKIVRAIYDKPTANIILNGQTLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQKKeikgiqlgkEEVKLSLFADDMIVYLE 1913 ***********************************99*********************************99************************** PP S.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 176 s.keelqelleaveewlkesglkinpeKtklvlfsg 210 + ++q+ll+ ++++ k sg+kin eK++++l+++ T292099_2 1914 NpIVSAQNLLKLISNFSKVSGYKINVEKSRAFLYTN 1949 *6677**************************98733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 10893.50 // Query: T292099_3 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 9959.78 // Query: T153830_1 [L=3816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 617 (0.0378388); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.43s 00:00:02.62 Elapsed: 00:00:00.91 # Mc/sec: 11996.62 // Query: T153830_2 [L=3815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.41s 00:00:01.91 Elapsed: 00:00:00.79 # Mc/sec: 13815.27 // Query: T153830_3 [L=3815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.36s 00:00:02.06 Elapsed: 00:00:00.84 # Mc/sec: 12992.94 // Query: T211930_1 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 7719.04 // Query: T211930_2 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 7.5 9.1 2.1 8.0 2.6 3.1 2 Bradykinin Bradykinin Domain annotation for each model (and alignments): >> Bradykinin Bradykinin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.5 0.012 1.9e+02 4 10 .. 585 591 .. 585 592 .. 0.96 2 ? 8.0 2.6 0.00013 2.1 1 11 [. 1290 1300 .. 1290 1301 .. 0.91 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.012 Bradykinin 4 RPaGFTP 10 RP+G TP T211930_2 585 RPPGLTP 591 9*****9 PP == domain 2 score: 8.0 bits; conditional E-value: 0.00013 Bradykinin 1 LQRRPaGFTPF 11 LQ P+GFTPF T211930_2 1290 LQAPPPGFTPF 1300 7888******* PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 8010.32 // Query: T211930_3 [L=1484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 7448.20 // Query: T343503_1 [L=3061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 15637.50 // Query: T343503_2 [L=3061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 15363.16 // Query: T343503_3 [L=3060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 15358.14 // Query: T011928_1 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 6403.86 // Query: T011928_2 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 6054.56 // Query: T011928_3 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6403.86 // Query: T308982_1 [L=8104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.42s 00:00:02.09 Elapsed: 00:00:00.67 # Mc/sec: 34603.23 // Query: T308982_2 [L=8104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.42s 00:00:02.02 Elapsed: 00:00:00.66 # Mc/sec: 35127.52 // Query: T308982_3 [L=8103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.36s 00:00:01.98 Elapsed: 00:00:00.65 # Mc/sec: 35663.55 // Query: T157217_1 [L=3303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 16291.93 // Query: T157217_2 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 16287.00 // Query: T157217_3 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.57 # Mc/sec: 16287.00 // Query: T052867_1 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 5435.58 // Query: T052867_2 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 5336.75 // Query: T052867_3 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5241.45 // Query: T342103_1 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5325.16 // Query: T342103_2 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 482 (0.0295597); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 5420.25 // Query: T342103_3 [L=1060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 5228.41 // Query: T376186_1 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-176 585.7 18.5 6.6e-176 585.7 18.5 1.7 2 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.5 0.21 3.5e+03 339 368 .. 333 362 .. 332 398 .. 0.80 2 ! 585.7 18.5 4.1e-180 6.6e-176 1 439 [. 792 1213 .. 792 1216 .. 0.98 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.21 DUF4641 339 pvpkaqlpthrpgppclsvhrgEfssGdln 368 p++ +q+p+ p p+++ + + ssG+l T376186_1 333 PGLTVQVPACSPPPRSKPALQTDTSSGELM 362 677899999999999999999999999975 PP == domain 2 score: 585.7 bits; conditional E-value: 4.1e-180 DUF4641 1 egrpgspvddeedaldflsqladEaaaivqqlsdldargvrrnpspescaaelsa.lwadleagpsgRgalalssveskqasaaplhlsglergrawg 97 egrpg+pvdd+ ++ d++++ladE+a+i+++ s v+ +pspe+++a+ s+ +wadle+gps+Rgal++s++e++qasa+plhls+++ g+aw+ T376186_1 792 EGRPGTPVDDQAGGGDYSFYLADEPATIMPPSS------VQGHPSPEGATAKGSTdIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWE 883 8********************************......*********************************************************** PP DUF4641 98 npkrgtksrmvvsedvqrps.eeglvglpsdsessDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvv 194 np+rg+ksr+++++d+q+ps e+++ +++ds+s+DE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vv T376186_1 884 NPERGSKSRLSFQVDPQQPSaEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVV 981 ********************66667778899******************************************************************* PP DUF4641 195 erqavgElessssKKmqsvvwgkggsrPSypgatAaaaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLl 292 er+avgEl++ s KKmqs+vwgk+g+rPS++ga a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+Ll T376186_1 982 ERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA-----AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLL 1074 *********************************.....9*********************************************************** PP DUF4641 293 GkskkvsllpsgpkqskhtgtGKksvarktresqavakeDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlP 390 Gks + pk++kh+++GKk+++rktresqa+a+eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++P T376186_1 1075 GKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVP 1165 ***99.......************************************************************************************** PP DUF4641 391 RgpapSgdqeppvrpprpeeqqqppqGaqgCprcvvLqkeiddLkeqLa 439 R +a Sgd++ppv+pprpe+qqqpp GaqgCprc++Lq+ei+dL++qLa T376186_1 1166 RCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRCILLQREIEDLRDQLA 1213 ******************7777766.**********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 6265.22 // Query: T376186_2 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 6371.41 // Query: T376186_3 [L=1313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6476.33 // Query: T303735_1 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 6415.05 // Query: T303735_2 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 6520.72 // Query: T303735_3 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6520.72 // Query: T043650_1 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 482 (0.0295597); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 12306.26 // Query: T043650_2 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.60 # Mc/sec: 12511.36 // Query: T043650_3 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 11039.44 // Query: T368668_1 [L=1244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 5311.75 // Query: T368668_2 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.64 # Mc/sec: 5556.27 // Query: T368668_3 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 5556.27 // Query: T165130_1 [L=1185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1029 (0.0631056); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.53s 00:00:02.40 Elapsed: 00:00:00.90 # Mc/sec: 3766.76 // Query: T165130_2 [L=1185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.88 # Mc/sec: 3852.37 // Query: T165130_3 [L=1185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1556 (0.095425); expected 326.1 (0.02) Passed bias filter: 380 (0.0233043); expected 326.1 (0.02) Passed Vit filter: 291 (0.0178462); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.03u 0.52s 00:00:04.55 Elapsed: 00:00:01.07 # Mc/sec: 3168.30 // Query: T060457_1 [L=3277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.66 # Mc/sec: 14204.45 // Query: T060457_2 [L=3277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 21.0 0.4 0.49 10.4 0.1 3.3 3 zf-BED BED zinc finger ------ inclusion threshold ------ 0.29 11.2 0.8 44 4.2 0.0 3.1 3 DUF678 Protein of unknown function (DUF678) Domain annotation for each model (and alignments): >> zf-BED BED zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.4 0.1 6e-05 0.49 14 44 .] 1730 1759 .. 1720 1759 .. 0.89 2 ? 0.2 0.0 0.089 7.3e+02 15 43 .. 1890 1917 .. 1885 1918 .. 0.72 3 ! 6.1 0.0 0.0013 10 13 44 .] 2018 2048 .. 2010 2048 .. 0.87 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 6e-05 SS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++ vC+ Cg l+ + +krH+r kHp T060457_2 1730 RHGMVCMVCGSSLAT-LKLSTIKRHIRQKHP 1759 67889**********.5*************8 PP == domain 2 score: 0.2 bits; conditional E-value: 0.089 S--EETTTTEE----SSTHHHHHHHHHS- CS zf-BED 15 qkavCryCgkvlsrgngttnLkrHLrrkH 43 +++vC+ Cg+ l + +++H H T060457_2 1890 NRLVCMACGRALPSL-HLDDIRAHVLEVH 1917 899******998773.6666666665555 PP == domain 3 score: 6.1 bits; conditional E-value: 0.0013 GSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 13 kkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 + +vC+ Cg l+ ++ +krH+ Hp T060457_2 2018 SRRGLVCMVCGGALAT-LKVSTIKRHILQVHP 2048 56678***********.5**********9998 PP >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 0.011 89 55 72 .. 1729 1746 .. 1717 1748 .. 0.79 2 ? 4.2 0.0 0.0054 44 54 71 .. 1887 1904 .. 1877 1908 .. 0.85 3 ? -0.8 0.0 0.19 1.5e+03 57 72 .. 2020 2035 .. 2010 2036 .. 0.83 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.011 DUF678 55 kgntlrCaACgSsLtlLr 72 + + + C CgSsL +L+ T060457_2 1729 ARHGMVCMVCGSSLATLK 1746 566789*********997 PP == domain 2 score: 4.2 bits; conditional E-value: 0.0054 DUF678 54 gkgntlrCaACgSsLtlL 71 ++gn l C ACg +L +L T060457_2 1887 PRGNRLVCMACGRALPSL 1904 679***********9887 PP == domain 3 score: -0.8 bits; conditional E-value: 0.19 DUF678 57 ntlrCaACgSsLtlLr 72 l C Cg +L +L+ T060457_2 2020 RGLVCMVCGGALATLK 2035 5799********9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.49u 0.31s 00:00:01.80 Elapsed: 00:00:00.77 # Mc/sec: 12175.25 // Query: T060457_3 [L=3276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.35s 00:00:01.67 Elapsed: 00:00:00.81 # Mc/sec: 11570.47 // Query: T228066_1 [L=693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.65 # Mc/sec: 3050.08 // Query: T228066_2 [L=693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.8 0.1 0.11 12.8 0.1 1.4 1 DUF1964 Domain of unknown function (DUF1964) Domain annotation for each model (and alignments): >> DUF1964 Domain of unknown function (DUF1964) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.1 6.7e-06 0.11 32 57 .. 202 229 .. 198 232 .. 0.91 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 6.7e-06 DUF1964 32 ePkrGlGvdnaapvasLr..WsDsaGdh 57 +PkrG G ++p+a L+ W +aGdh T228066_2 202 TPKRGTGASGHQPIAILKsvWAQAAGDH 229 7***************9555******** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.72 # Mc/sec: 2753.55 // Query: T228066_3 [L=693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 3197.67 // Query: T216723_1 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.57 # Mc/sec: 6106.39 // Query: T216723_2 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 5533.92 // Query: T216723_3 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.65 # Mc/sec: 5448.78 // Query: T316470_1 [L=4334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.42s 00:00:02.01 Elapsed: 00:00:00.82 # Mc/sec: 15120.53 // Query: T316470_2 [L=4333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.36s 00:00:01.85 Elapsed: 00:00:00.66 # Mc/sec: 18781.78 // Query: T316470_3 [L=4333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.73 # Mc/sec: 16980.79 // Query: T121819_1 [L=1928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 7555.73 // Query: T121819_2 [L=1927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 8228.09 // Query: T121819_3 [L=1927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1927 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 8481.26 // Query: T212634_1 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.71 # Mc/sec: 2550.57 // Query: T212634_2 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 3117.32 // Query: T212634_3 [L=632] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (632 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 2964.01 // Query: T039830_1 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 2736.25 // Query: T039830_2 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 2976.27 // Query: T039830_3 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.69 # Mc/sec: 2454.51 // Query: T228728_1 [L=8268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.93u 0.47s 00:00:03.40 Elapsed: 00:00:01.15 # Mc/sec: 20390.81 // Query: T228728_2 [L=8268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 495 (0.0303569); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.22u 0.45s 00:00:03.67 Elapsed: 00:00:00.83 # Mc/sec: 28498.00 // Query: T228728_3 [L=8268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-05 23.0 0.0 3.3e-05 22.5 0.0 1.1 1 AMP-binding AMP-binding enzyme ------ inclusion threshold ------ 0.67 8.5 9.7 1.1 7.8 9.7 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> AMP-binding AMP-binding enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.0 4e-09 3.3e-05 380 421 .. 164 203 .. 160 205 .. 0.93 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 4e-09 T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEESSSEEE CS AMP-binding 380 nkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421 ++pe tae+ + g+ TGD +++de+Gy++++gR+ d+i+ T228728_3 164 GNPENTAEVEC--GDVCDTGDRATVDEEGYIWFLGRSHDTIN 203 69******988..68*************************97 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 9.7 0.00013 1.1 187 237 .. 4017 4064 .. 3957 4176 .. 0.62 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00013 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 187 sknkkkdkekekkkekssksesgke..eerskdeerekeadkgkdretnrate 237 s+++++++e+e+++e+++ +++g + +er+k+ +e+++ k+ +e T228728_3 4017 SRKRERERERERERERKEGRKEGRKgrKERKKEGRQERKERKRGRG-----KE 4064 3333333322222222222222211001111111111111111111.....11 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 581 (0.0356311); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.37u 0.52s 00:00:03.89 Elapsed: 00:00:01.13 # Mc/sec: 20748.55 // Query: T044443_1 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-37 128.3 1.4 2.8e-37 128.3 1.4 2.7 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.3 1.4 1.7e-41 2.8e-37 235 334 .. 202 301 .. 196 302 .. 0.98 2 ? -6.2 7.4 1 1.6e+04 228 278 .. 717 768 .. 687 776 .. 0.72 3 ? -2.6 0.9 0.1 1.7e+03 63 106 .. 1298 1338 .. 1294 1349 .. 0.75 Alignments for each domain: == domain 1 score: 128.3 bits; conditional E-value: 1.7e-41 EEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEE CS Transposase_22 235 yrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeik 329 +rtP + kr+ ++ i++r++k ++k++il+a+r+k +vt+kGkPirltad+saetl+arr+w++++++lk++++q r+ly klsii +G i+ T044443_1 202 KRTPGKLITKRSLPKNIVIRLSKFKMKERILRAMRQKHQVTYKGKPIRLTADFSAETLQARRDWGPIFRLLKQNNYQARILYLVKLSIIYEGKIQ 296 7********************************************************************************************** PP EESSH CS Transposase_22 330 vfidk 334 +f +k T044443_1 297 LFSNK 301 **988 PP == domain 2 score: -6.2 bits; conditional E-value: 1 ---EEEEEEESSSS-TSSSS--EEEEEESSHHH.HHHHHHHHHHHS-EEETT CS Transposase_22 228 nviiqeiyrtPnrqdskrassrhiivrttkvln.kdkilkavrekGrvtlkG 278 iiq i t r+ +k++ + r+tk k +i ekG +t T044443_1 717 TKIIQKINETKGRFFEKKNKIDRPLTRLTKKRRqKIQITSLRNEKGDITTET 768 4589999999999999999988888998886541556666666899998765 PP == domain 3 score: -2.6 bits; conditional E-value: 0.1 XXXXXXXXXXXXXXXXXXXXXXXX..................XX CS Transposase_22 63 lieskakelealkekeentekqlkiikekqentskqvmemnkel 106 + ++ ++l+++ + ++nt l+ ++n sk +me +k l T044443_1 1298 NDHTAKRNLQIQHNPHQNTTIILH---RIRKNNSKMLMEPKKSL 1338 556667788999999999988777...55678899999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1045 (0.0640868); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 7011.11 // Query: T044443_2 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 17.7 0.0 0.0056 16.8 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 3.5e-07 0.0056 1 71 [. 376 444 .. 376 455 .. 0.81 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 3.5e-07 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEEC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsr 71 lt Nvng ++ + ++ + a++++++++ + +lqE++ +++ +l+ +a + + +++q gva+l++ T044443_2 376 LTLNVNG----LNAPLKRYRTAEWIRTQQPTICCLQETHPTHKNSHKLKVkeWKKAFHANGHQKQVGVAILIS 444 699****....566677889*****************999999888888877555566666777788888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 478 (0.0293144); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 7678.83 // Query: T044443_3 [L=1690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-37 127.9 5.7 6.3e-37 127.1 5.7 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 0.0031 17.2 2.6 0.0063 16.2 2.6 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.1 5.7 7.7e-41 6.3e-37 1 222 [] 996 1252 .. 996 1252 .. 0.95 Alignments for each domain: == domain 1 score: 127.1 bits; conditional E-value: 7.7e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g +++yR+isl+++d k++nk++a+ ++++ +k+++++q+ f pg + + ++ +++ ++++ k+k+++++ D +ka ++ ++++ + T044443_3 996 IPKPGkhiakKENYRLISLMNIDAKIVNKILASEIQQHTKKKIHYDQVDFIPGMQGWFNIrksiNVIPHINRIKNKNHMIILTDAEKALNKTQHRFMI 1093 789999999999*************************************************9999999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskske 178 ++l +++++++ +n+ik+++ + ++++ +n+e+ + ++ +g++qG++ S llfn++++ l r +r++ ++v+l+++aDD++i+ ++++ T044443_3 1094 KTLSKMGTQETYLNVIKAIYDKLTANIILNKEKLKAFPLRTGTRQGCPFSLLLFNIVLEVLARAIRQEKeikgiqigkEEVKLSLFADDTIIYLENPK 1191 ********************************99*********************************99***************************** PP HHHHHHHHHHH.HHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 179 elqelleavee.wlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 + ++ l ++ + + k sg+kin +K+ ++l+ s + ++kyLG++l T044443_3 1192 DSSRKLVELIK*FSKVSGYKINVHKSIALLYtnskqaknqiknSTsftiAAIKIKYLGIHL 1252 *****************************99999999888765115688999******986 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 2.6 7.8e-07 0.0063 3 118 .. 475 597 .. 473 598 .. 0.68 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 7.8e-07 Exo_endo_phos_2 3 iisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkegptfeseng..ss 89 i ++ p++ + + +++ l +l++e +s ++ii+GDfN + ++ + +++++ +++ +L +le+ + + + + ++++ f s+ + s T044443_3 475 ILNIHAPNTG-APKFIKQLLIDLRNEIDS-NTIIVGDFNTPLTALDRSSRQKvNKETMNLNYTLEQMDSTNIyktfHPTTTQYAFYSTMHgtFS 566 5556665555.666777888888888887.8****************88887888888887777777766332221222222333333334447 PP Exo_endo_phos_2 90 iiDltltsdnlaks..leleeedlgSDHrpi 118 iD + ++ ++ + + ++SDH+ i T044443_3 567 KIDHMTDHKTSLNTfkKIEIISSTLSDHSGI 597 888877776666669877778899****987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 538 (0.032994); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.78 # Mc/sec: 6198.47 // Query: T188379_1 [L=4875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.35s 00:00:02.09 Elapsed: 00:00:00.87 # Mc/sec: 16030.51 // Query: T188379_2 [L=4875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.35s 00:00:01.98 Elapsed: 00:00:00.81 # Mc/sec: 17217.96 // Query: T188379_3 [L=4874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.37s 00:00:02.04 Elapsed: 00:00:00.73 # Mc/sec: 19100.94 // Query: T322705_1 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 5016.67 // Query: T322705_2 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 4605.47 // Query: T322705_3 [L=981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.71 # Mc/sec: 3952.78 // Query: T236008_1 [L=7077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1430 (0.0876978); expected 326.1 (0.02) Passed bias filter: 400 (0.0245308); expected 326.1 (0.02) Passed Vit filter: 318 (0.019502); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.11u 0.56s 00:00:06.67 Elapsed: 00:00:01.37 # Mc/sec: 14778.17 // Query: T236008_2 [L=7076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 873 (0.0535386); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.32u 0.36s 00:00:03.68 Elapsed: 00:00:01.19 # Mc/sec: 17011.12 // Query: T236008_3 [L=7076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-06 24.9 0.3 0.0018 17.3 0.0 2.4 2 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.1 0.2 0.00057 9.3 130 171 .. 3637 3671 .. 3625 3945 .. 0.76 2 ! 17.3 0.0 1.1e-07 0.0018 99 172 .. 4210 4293 .. 4203 5156 .. 0.82 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.00057 PHO4 130 gllaallfllvrrlillkaalkllpllvlltvainaflilyk 171 +++ +++++ ++ ++ ++ +l++++v+++++++++ T236008_3 3637 MMMMVIVMV-------VMTMMVMVMMLMVVMVMMLMMMVTMM 3671 111111111.......12222222222222222222222211 PP == domain 2 score: 17.3 bits; conditional E-value: 1.1e-07 PHO4 99 iGaalaaag.savkwgglvkivlswvlsPllggllaallfllvrrlil..lkaalkllpllvlltvainaflilyk.......l 172 i++ ++ + v ++ ++ +++ +++++++ +++ ++++++v+ +++ ++a++ ++ ++++++++++++ i++k T236008_3 4210 IAVVIVVMMvVLVMVMMMAMVIMVMMMAVMVVMVMMVIMMMIVMVMVVkmIMAMVMMMMMIMMVMTMVVIITIMLKtlhttltR 4293 334444322133334567778888888888888888888888888866543334444444444444444455554444444440 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1366 (0.0837728); expected 326.1 (0.02) Passed bias filter: 279 (0.0171103); expected 326.1 (0.02) Passed Vit filter: 164 (0.0100576); expected 16.3 (0.001) Passed Fwd filter: 46 (0.00282105); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.14u 0.58s 00:00:05.72 Elapsed: 00:00:01.44 # Mc/sec: 14057.80 // Query: T124779_1 [L=2761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.61 # Mc/sec: 12948.77 // Query: T124779_2 [L=2761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.60 # Mc/sec: 13164.59 // Query: T124779_3 [L=2761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.82 # Mc/sec: 9632.62 // Query: T090252_1 [L=5606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.38s 00:00:02.02 Elapsed: 00:00:00.81 # Mc/sec: 19799.77 // Query: T090252_2 [L=5605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.37s 00:00:02.02 Elapsed: 00:00:00.78 # Mc/sec: 20557.63 // Query: T090252_3 [L=5605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.33s 00:00:02.11 Elapsed: 00:00:00.83 # Mc/sec: 19319.22 // Query: T212563_1 [L=2515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.76 # Mc/sec: 9467.09 // Query: T212563_2 [L=2515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.64 # Mc/sec: 11242.17 // Query: T212563_3 [L=2515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.68 # Mc/sec: 10580.86 // Query: T090235_1 [L=3921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.37s 00:00:01.77 Elapsed: 00:00:00.73 # Mc/sec: 15366.18 // Query: T090235_2 [L=3921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.80 # Mc/sec: 14021.64 // Query: T090235_3 [L=3920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.68 # Mc/sec: 16491.84 // Query: T129747_1 [L=7390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.40s 00:00:02.50 Elapsed: 00:00:00.88 # Mc/sec: 24024.47 // Query: T129747_2 [L=7390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.38s 00:00:02.13 Elapsed: 00:00:00.72 # Mc/sec: 29363.24 // Query: T129747_3 [L=7389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.32s 00:00:01.85 Elapsed: 00:00:00.64 # Mc/sec: 33029.18 // Query: T170373_1 [L=1814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.4 7.0 7.3 5.6 6.3 7.3 1.2 1 MscS_porin Mechanosensitive ion channel porin domain Domain annotation for each model (and alignments): >> MscS_porin Mechanosensitive ion channel porin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 7.3 0.00035 5.6 71 172 .. 939 1032 .. 928 1037 .. 0.79 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00035 MscS_porin 71 skeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlrelqtrperaqqqltearqrlqeirnrLnssaasgtplsqaqrtalqaelaalkaqiee 167 ++ ++ +++++ L+++l++ + ++ e+++q +q ++ +l +++r ++ te +rl+e +r +++a+ a a++aal+ +++ T170373_1 939 TPSHFPSTPQSRLQTQLTTLKIEMDEAKAQGTQMGAENGALTEALARWEAAATESTRRLDEALRRAG--------VAEAEGEACAAREAALRERLNV 1027 6678999******************************************************977443........4555555555555555555555 PP MscS_porin 168 lelel 172 le e+ T170373_1 1028 LEAEM 1032 55443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 742 (0.0455047); expected 326.1 (0.02) Passed bias filter: 339 (0.0207899); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 9267.05 // Query: T170373_2 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 IncA IncA protein Domain annotation for each model (and alignments): >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 1.2e-05 0.19 35 116 .. 193 283 .. 190 286 .. 0.95 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 1.2e-05 IncA 35 alisiilgivllAlgvvLlalgllllllkapvlqsedekiee.........srlqeelselesrlaeleeeleqleerlaeleaelkdlee 116 al+ +++++++ A g +L+a +l+ ++ p++++ ++ + +l ++l+e+ +r l+++l+q e++ +ele+ lk++e T170373_2 193 ALCGVAVFLAAAAAGGALVAWNLAASAARGPRCPEPGANATAppgdpppgvDDLRRRLAEAAEREEALARQLDQAESIRHELEKALKACEG 283 78999999*****************************99999*********************************************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 322 (0.0197473); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 9261.94 // Query: T170373_3 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 686 (0.0420704); expected 326.1 (0.02) Passed bias filter: 351 (0.0215258); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 9430.34 // Query: T111409_1 [L=3047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.99 7.4 22.9 1.5 6.8 22.9 1.1 1 SSP160 Special lobe-specific silk protein SSP160 Domain annotation for each model (and alignments): >> SSP160 Special lobe-specific silk protein SSP160 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 22.9 8.9e-05 1.5 671 706 .. 1673 1709 .. 1662 1744 .. 0.54 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 8.9e-05 SSP160 671 gsvpdeattttssttttttttttaapttttt.kaana 706 sv ++tttt++tttt+ttttt++ ttttt ++ a T111409_1 1673 CSVTTATTTTTTTTTTTATTTTTTTTTTTTTtTTTTA 1709 4665555555444444433333332222222022222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 668 (0.0409665); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.62 # Mc/sec: 14059.60 // Query: T111409_2 [L=3047] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3047 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.27s 00:00:01.37 Elapsed: 00:00:00.51 # Mc/sec: 17092.06 // Query: T111409_3 [L=3046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.26s 00:00:01.27 Elapsed: 00:00:00.50 # Mc/sec: 17428.18 // Query: T260047_1 [L=3846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.22s 00:00:01.27 Elapsed: 00:00:00.50 # Mc/sec: 22005.50 // Query: T260047_2 [L=3845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.51 # Mc/sec: 21568.41 // Query: T260047_3 [L=3845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.51 # Mc/sec: 21568.41 // Query: T202860_1 [L=4014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.50 # Mc/sec: 22966.74 // Query: T202860_2 [L=4014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 20146.27 // Query: T202860_3 [L=4013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.64 # Mc/sec: 17938.30 // Query: T358364_1 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 6431.76 // Query: T358364_2 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-40 136.7 1.7 1.3e-39 136.2 1.7 1.1 1 RBP_receptor Retinol binding protein receptor Domain annotation for each model (and alignments): >> RBP_receptor Retinol binding protein receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.2 1.7 7.8e-44 1.3e-39 2 139 .. 798 933 .. 797 940 .. 0.93 Alignments for each domain: == domain 1 score: 136.2 bits; conditional E-value: 7.8e-44 RBP_receptor 2 sCdptvdeelfhhyllilsllilllLslLqr.....rekllkellrgrpgllspvdfldttsnrwvyaavfgvlfsslvllllsedplpflvpssks 93 +C ++vd+elf+hy+li+sl+i+l+Ls+Lqr +++ +++ll++ +g+++p+df++t+snrw+y+++fg++ +++v++l+se ++p++ p T358364_2 798 TCTSSVDMELFLHYSLIPSLFIMLILSFLQR*ehcrQRDDTSYLLGNCFGIIMPLDFVGTFSNRWSYGITFGAT-ANKVMFLFSEGYQPLQIP---- 889 7****************************97765324444559*******************************.******************.... PP RBP_receptor 94 ekeewaralvkllallyvpllyypllaClstefr.vgavlGlllSlv 139 +wa+a+ +l++ ++v+l+++p++aCls+ef+ v+++lG+++S + T358364_2 890 ---QWAQAFELLIGGIEVGLSHFPFFACLSSEFQlVSSILGFCYSDL 933 ...9****************************************955 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 6543.50 // Query: T358364_3 [L=1258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 6664.67 // Query: T018731_1 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-09 38.5 0.1 1.1e-09 38.5 0.1 2.4 2 DUF3496 Domain of unknown function (DUF3496) 0.0027 17.2 4.5 0.0027 17.2 4.5 1.7 2 DUF4795 Domain of unknown function (DUF4795) ------ inclusion threshold ------ 4.1 7.0 10.7 6.7 6.3 10.7 1.3 1 IncA IncA protein Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 9.8 0.14 7.5e+02 8 65 .. 66 121 .. 62 139 .. 0.78 2 ! 38.5 0.1 2.1e-13 1.1e-09 64 107 .. 149 191 .. 143 193 .. 0.95 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.14 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018731_1 66 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 121 667789***********9..89******999994466666665.455567788877777 PP == domain 2 score: 38.5 bits; conditional E-value: 2.1e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018731_1 149 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 191 89*****************************.**********86 PP >> DUF4795 Domain of unknown function (DUF4795) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 4.5 4.9e-07 0.0027 15 106 .. 44 138 .. 13 171 .. 0.84 2 ? -1.3 0.2 0.23 1.3e+03 166 182 .. 454 466 .. 453 475 .. 0.82 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 4.9e-07 DUF4795 15 aieklqeelekleekvkslekrledkekklealkkqieeLekvkadkeeveeel.aekadkeaLatkvsrdqfDeakkeLekmleellekle....e 106 + + +e+e +++k +l k+++ +++l ++kk +e+ek +dk+ +eee+ ++k e +++v+ ++++e+k+eL++ + +++ekle + T018731_1 44 TFDDFMAEKEAVSSKCVNLAKEIQVFQQELLSMKKVQQECEKLEEDKKMLEEEIlNLKTHME--NSMVELSKLQEYKSELDERAMQAVEKLEeihlQ 138 56677789999************************************999999758887776..89************************9944440 PP == domain 2 score: -1.3 bits; conditional E-value: 0.23 DUF4795 166 rkkLlerfdcISCdrpv 182 +++++ cISC +p T018731_1 454 KMYII----CISCSTPF 466 67777....****9986 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 10.7 0.0012 6.7 67 128 .. 67 128 .. 43 140 .. 0.45 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0012 IncA 67 lqsedekiee....srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksv 128 +++++ e ++q+e +le+ ++leee+ l+++ + + el++l+e++ +l e + T018731_1 67 QVFQQ----EllsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQA 128 11111....012224444444444444444444444444444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 973 (0.0596713); expected 326.1 (0.02) Passed bias filter: 288 (0.0176622); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 3588.59 // Query: T018731_2 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 3719.08 // Query: T018731_3 [L=715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 3719.08 // Query: T171721_1 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 1593.89 // Query: T171721_2 [L=312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.53 # Mc/sec: 1684.11 // Query: T171721_3 [L=311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 1744.55 // Query: T371834_1 [L=799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0087 15.9 0.1 0.023 14.6 0.0 1.8 2 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.43 7.1e+03 16 28 .. 147 159 .. 143 160 .. 0.80 2 ! 14.6 0.0 1.4e-06 0.023 11 36 .. 175 202 .. 173 217 .. 0.79 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.43 C.CT---SCHHHH CS HTH_Tnp_Tc5 16 rergapitgelir 28 +++ p++ ++i+ T371834_1 147 IKSDTPVNTQMII 159 77899******97 PP == domain 2 score: 14.6 bits; conditional E-value: 1.4e-06 HHHHHC.CT---SCHHHHHHHHHHH..H CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela..s 36 Wi++++ +++p++++li++k + l+ T371834_1 175 WIEDQTSHNIPLSQSLIQRKTLTLFhsM 202 *********************9986431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 4312.84 // Query: T371834_2 [L=799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 4312.84 // Query: T371834_3 [L=799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-37 127.7 0.4 4.4e-37 127.2 0.4 1.2 1 DDE_1 DDE superfamily endonuclease ------ inclusion threshold ------ 0.055 13.5 0.1 0.13 12.3 0.1 1.5 1 DMAP1_like Putative DMAP1-like Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.2 0.4 5.4e-41 4.4e-37 1 176 [] 299 486 .. 299 486 .. 0.94 Alignments for each domain: == domain 1 score: 127.2 bits; conditional E-value: 5.4e-41 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldvey..ksnrkawltssifeeWLekvfdkrve.....kaekrkvlLllddsrshe.tve 92 k+rlt ll+anaag+ kLkp++i+++k+ +a kn kl+ + k+++k w+t+++f++W+++++++++e k+ k+lLl+d++++ + T371834_3 299 KDRLTFLLGANAAGDFKLKPMLIYHSKTVKALKN---YAKLTLPIl*KWKNKVWMTAHLFTAWFTEYLKPTLEtycseKKIPFKILLLIDNAPGPPrDLR 395 689*******************************...555555555667899*****************************************9994555 PP DDE_1 93 lsecelqniklvflPasstsllqPldqgvvselKarYrrqllkallalqnrlsk..........eqkkltllnalkfikkAwnavsketIksaw 176 ++++i++vf+Pa++ts+l P+dqg+ ++K++Y ++++ +++ + nr+s+ + + +l+a+k+i ++w++v+ +t++++w T371834_3 396 E---MYREINAVFMPANTTSILYPMDQGITLTFKSYYLKNTFCKAITAINRDSSdgsgqnklktYWRGFAILDAIKNIHDSWEEVKISTLTEVW 486 5...9************************************************9*********99**************************999 PP >> DMAP1_like Putative DMAP1-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 1.5e-05 0.13 48 90 .. 57 98 .. 53 102 .. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.5e-05 DMAP1_like 48 nkkqsypnvfLaSslgfskstwnkkvekiLkkfgldkklkypt 90 +k+++ p +L Ss+ +sk+twn + + +Lk+ gl+ k++ T371834_3 57 SKNRENPIQYLTSSVFISKTTWNSN-NSTLKEEGLSTTAKHCC 98 789999****************977.67899999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 3809.67 // Query: T258975_1 [L=2672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.67 # Mc/sec: 11409.16 // Query: T258975_2 [L=2672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.67 # Mc/sec: 11409.16 // Query: T258975_3 [L=2671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5 6.7 6.6 9.5 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00058 9.5 6 41 .. 1681 1716 .. 1667 1727 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00058 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258975_3 1681 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1716 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2671 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11074.31 // Query: T241460_1 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 4060.53 // Query: T241460_2 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 4267.00 // Query: T241460_3 [L=879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 4335.64 // Query: T226634_1 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 5726.20 // Query: T226634_2 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.70 # Mc/sec: 5153.58 // Query: T226634_3 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 5550.01 // Query: T025727_1 [L=997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.69 # Mc/sec: 4133.69 // Query: T025727_2 [L=997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 4388.07 // Query: T025727_3 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 4252.82 // Query: T316340_1 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.66 # Mc/sec: 4156.87 // Query: T316340_2 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 4286.77 // Query: T316340_3 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-15 56.1 38.0 0.072 12.7 0.2 11.4 13 Histone_H2A_C C-terminus of histone H2A Domain annotation for each model (and alignments): >> Histone_H2A_C C-terminus of histone H2A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 0.1 9.2e-05 1.5 13 26 .. 643 656 .. 640 659 .. 0.88 2 ! 2.9 0.0 0.0053 86 11 25 .. 654 668 .. 652 670 .. 0.86 3 ! 11.1 0.1 1.4e-05 0.22 10 25 .. 666 681 .. 664 682 .. 0.89 4 ! 11.3 0.1 1.2e-05 0.19 10 25 .. 679 694 .. 677 696 .. 0.89 5 ! 11.3 0.1 1.2e-05 0.19 10 25 .. 692 707 .. 690 709 .. 0.89 6 ! 3.9 0.0 0.0026 42 10 25 .. 705 720 .. 703 721 .. 0.88 7 ! 12.7 0.2 4.4e-06 0.072 10 25 .. 718 733 .. 713 735 .. 0.90 8 ! 11.3 0.1 1.2e-05 0.19 10 25 .. 731 746 .. 729 748 .. 0.89 9 ! 6.1 0.1 0.00052 8.4 10 26 .. 744 760 .. 742 761 .. 0.90 10 ! 7.9 0.1 0.00014 2.4 14 26 .. 761 773 .. 759 775 .. 0.88 11 ! 3.2 0.0 0.0041 67 11 25 .. 771 785 .. 770 786 .. 0.88 12 ! 6.9 0.1 0.00029 4.6 10 26 .. 783 799 .. 780 800 .. 0.90 13 ! 2.7 0.1 0.0061 1e+02 14 25 .. 800 811 .. 798 812 .. 0.89 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 9.2e-05 Histone_H2A_C 13 AqGGVLPnIhkvLL 26 ++GGVLP+ +++L+ T316340_3 643 MEGGVLPHLQTTLM 656 58********9996 PP == domain 2 score: 2.9 bits; conditional E-value: 0.0053 Histone_H2A_C 11 TIAqGGVLPnIhkvL 25 T + GVLP +++L T316340_3 654 TLMDEGVLPYLQTTL 668 88889*******998 PP == domain 3 score: 11.1 bits; conditional E-value: 1.4e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316340_3 666 TTLMDGGVLPHLQTTL 681 699**********998 PP == domain 4 score: 11.3 bits; conditional E-value: 1.2e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316340_3 679 TTLMDGGVLPHLQTTL 694 699**********998 PP == domain 5 score: 11.3 bits; conditional E-value: 1.2e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316340_3 692 TTLMDGGVLPHLQTTL 707 699**********998 PP == domain 6 score: 3.9 bits; conditional E-value: 0.0026 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVL + +++L T316340_3 705 TTLMDGGVLRHLQTTL 720 699*********9998 PP == domain 7 score: 12.7 bits; conditional E-value: 4.4e-06 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T ++GGVLP+ +++L T316340_3 718 TTLMHGGVLPHLQTTL 733 799**********998 PP == domain 8 score: 11.3 bits; conditional E-value: 1.2e-05 Histone_H2A_C 10 VTIAqGGVLPnIhkvL 25 T + GGVLP+ +++L T316340_3 731 TTLMDGGVLPHLQTTL 746 699**********998 PP == domain 9 score: 6.1 bits; conditional E-value: 0.00052 Histone_H2A_C 10 VTIAqGGVLPnIhkvLL 26 T + GGVL + +++L+ T316340_3 744 TTLMDGGVLLHLQTMLM 760 699***********995 PP == domain 10 score: 7.9 bits; conditional E-value: 0.00014 Histone_H2A_C 14 qGGVLPnIhkvLL 26 GGVLP+ +++L+ T316340_3 761 DGGVLPHLQTTLM 773 7********9995 PP == domain 11 score: 3.2 bits; conditional E-value: 0.0041 Histone_H2A_C 11 TIAqGGVLPnIhkvL 25 T + G VLP+ +++L T316340_3 771 TLMDGEVLPHLQTTL 785 889999******998 PP == domain 12 score: 6.9 bits; conditional E-value: 0.00029 Histone_H2A_C 10 VTIAqGGVLPnIhkvLL 26 T + GGVL + +++L+ T316340_3 783 TTLMDGGVLLHLQAMLM 799 699************95 PP == domain 13 score: 2.7 bits; conditional E-value: 0.0061 Histone_H2A_C 14 qGGVLPnIhkvL 25 GGVL + +++L T316340_3 800 DGGVLLHLQAML 811 7*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 3919.34 // Query: T040460_1 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-11 41.6 5.4 2.4 8.2 0.0 8.9 11 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.1 0.11 1.8e+03 33 59 .. 591 617 .. 561 639 .. 0.54 2 ! 6.3 0.3 0.00059 9.6 18 58 .. 626 666 .. 589 674 .. 0.48 3 ! 8.2 0.0 0.00015 2.4 3 60 .. 641 713 .. 639 731 .. 0.73 4 ! 7.9 0.0 0.00018 3 3 75 .. 696 769 .. 689 771 .. 0.77 5 ! 7.9 0.0 0.00019 3 5 66 .. 748 814 .. 744 826 .. 0.86 6 ? 0.9 0.1 0.028 4.6e+02 30 67 .. 928 965 .. 916 967 .. 0.65 7 ? -1.1 0.0 0.12 1.9e+03 35 53 .. 1038 1056 .. 1010 1086 .. 0.47 8 ! 5.4 0.0 0.0011 19 8 68 .. 1096 1159 .. 1092 1167 .. 0.77 9 ! 6.2 0.0 0.00063 10 21 60 .. 1197 1236 .. 1174 1239 .. 0.84 10 ? -1.9 0.0 0.22 3.5e+03 28 64 .. 1259 1295 .. 1249 1307 .. 0.43 11 ? -0.6 0.0 0.083 1.3e+03 14 44 .. 1393 1423 .. 1334 1429 .. 0.59 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.11 Pentapeptide_4 33 lsnvnFdkcllsdvdfaeadlkrasFs 59 +++ F++ l+++ f ++ +++F+ T040460_1 591 FHSSPFHSILFDSILFHYFRIHSIPFH 617 222222222222222222222222222 PP == domain 2 score: 6.3 bits; conditional E-value: 0.00059 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasF 58 F + +++ F ++++++ +F++c l+ + + l +++F T040460_1 626 FHFIPFESIPFHSIPFHSISFHSCPLHYITLHYITLHYITF 666 33333333333333334444444444433333333333333 PP == domain 3 score: 8.2 bits; conditional E-value: 0.00015 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanl.......snvn..........FdkcllsdvdfaeadlkrasFsg 60 F++ sf+ c l+++++ ++l+ +F + ++ + F++ +l++ +f+ + + +++++ T040460_1 641 FHSISFHSCPLHYITLHYITLHYITFGSNRFcailvpsI--RlesppflcipFESISLHSISFESIPFHSIPLES 713 9999**************************988777541..3334455555577777777777777776666655 PP == domain 4 score: 7.9 bits; conditional E-value: 0.00018 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkda 75 +++ sf+ ++ + ++++ +++ F+++++++ F++ +++ f + + +++F+ + +v f+ +++ T040460_1 696 LHSISFESIPFHSIPLESIPIHSIPFEYIPFHSSPFHSIPFKSIPFHSIPFDSSPFHFIQVHSVPFHSiRVHSI 769 66777888888888888888888888888888888888888888888888888888888888888866455555 PP == domain 5 score: 7.9 bits; conditional E-value: 0.00019 Pentapeptide_4 5 ncsfnncklsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknv 66 ++ f+ + + v F ++r ++ +F ++++ +++ F++ +++ f + +++F+ c + ++ T040460_1 748 SSPFHFIQVHSVPFHSIRVHSIHFHSIPFllgplNSTAFHSIPFHSIPFHSGPFHSIPFHSCAFHSI 814 55677778899999999999999999999999999999*******************9999998765 PP == domain 6 score: 0.9 bits; conditional E-value: 0.028 Pentapeptide_4 30 eanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvn 67 +++ ++ F+++ +++++++ ++++++F+ + + +++ T040460_1 928 AIQVHSIPFHSNPFHSTRVNSFRVNSIPFHSSPFHSIT 965 44445556777777777777777777777766655554 PP == domain 7 score: -1.1 bits; conditional E-value: 0.12 Pentapeptide_4 35 nvnFdkcllsdvdfaeadl 53 + F + ++++ f + T040460_1 1038 SIPFYSIRVHSTAFHSGPF 1056 2222222222222222222 PP == domain 8 score: 5.4 bits; conditional E-value: 0.0011 Pentapeptide_4 8 fnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdv...dfaeadlkrasFsgcdlknvnf 68 f+ + ++ + Fs + +k++ F ++++++ +F++ +s+ +f+++ + +++F+ + + +++f T040460_1 1096 FLLSPFHSIPFSFNPIKSSPFHSIPFHSIRFHSIRVSSIpfpSFRDIPFHSIPFESVPFHCIQF 1159 666779999999999999********99999999999983334566667777777666666666 PP == domain 9 score: 6.2 bits; conditional E-value: 0.00063 Pentapeptide_4 21 arlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 +r+ + F +++ ++ F+++ ++++ f+ +++ +++F++ T040460_1 1197 IRIYSIPFHSIRVHSIAFHSNRVQSTPFYSIRVHSIPFHE 1236 5666677889999***********************9986 PP == domain 10 score: -1.9 bits; conditional E-value: 0.22 Pentapeptide_4 28 FteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 F + + ++ F+++ +++ + +++++F+ T040460_1 1259 FHSFRVHSIPFHSSPFHSIPLHLSPFRSIPFHFIRVH 1295 3444444444444444444444444444444444444 PP == domain 11 score: -0.6 bits; conditional E-value: 0.083 Pentapeptide_4 14 snvnFsearlkdcnFteanlsnvnFdkclls 44 + ++F ++ l++ F+++++++ F+++ l+ T040460_1 1393 NSIQFDTIPLHSFPFVSTPFHSIPFHSSPLH 1423 2334444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.77 # Mc/sec: 5312.97 // Query: T040460_2 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-17 62.4 7.0 0.002 18.1 1.2 8.4 9 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.2 0.0 0.0003 4.8 14 68 .. 600 654 .. 588 672 .. 0.72 2 ! 18.1 1.2 1.2e-07 0.002 3 67 .. 699 763 .. 697 772 .. 0.92 3 ! 9.3 0.0 6.7e-05 1.1 3 76 .. 859 933 .. 854 934 .. 0.88 4 ! 4.9 0.0 0.0016 26 12 60 .. 1003 1051 .. 993 1059 .. 0.55 5 ? 0.2 0.0 0.046 7.4e+02 18 61 .. 1079 1127 .. 1073 1136 .. 0.83 6 ! 9.8 0.0 4.7e-05 0.76 2 73 .. 1141 1213 .. 1140 1216 .. 0.90 7 ! 11.1 0.0 1.8e-05 0.29 12 70 .. 1191 1249 .. 1183 1253 .. 0.92 8 ? -0.4 0.0 0.072 1.2e+03 33 59 .. 1307 1343 .. 1283 1347 .. 0.46 9 ? -3.8 0.0 0.81 1.3e+04 29 58 .. 1396 1425 .. 1395 1428 .. 0.60 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0003 Pentapeptide_4 14 snvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnf 68 + F+++++++ F +++ ++ +F++ +++++ f + + +++F+ +++ T040460_2 600 YSIPFYSITFESIPFHSIRVHSISFHSISFHSSPFHFIPFHSIPFHSIRVHYITL 654 4455777777777777777788888888888888888888888887766655555 PP == domain 2 score: 18.1 bits; conditional E-value: 1.2e-07 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvn 67 F+++ f+ ++++ ++F + +++++F +++ ++ F+++ +++ f +++ ++sF+ + ++ T040460_2 699 FHSSPFLFTQFHSSQFQSTPFHSSTFHSIRVHSILFHSNPFHSIPFLLIRVHSISFKSILFHSTP 763 99999***************************************************987666655 PP == domain 3 score: 9.3 bits; conditional E-value: 6.7e-05 Pentapeptide_4 3 FtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klkdad 76 F++ f+ +++ + F ++ ++ F+++++ + F+++ + + f + +k++sF+ + + f+ +k++ T040460_2 859 FHSTPFHSIQFHALPFLSIPFHLGPFNSIPFGSIPFHSTPFGSFPFLSIPFKSLSFHSIPFHSGFFHSmPFKSIP 933 7777888999999999999999999999999****************************9999999544888875 PP == domain 4 score: 4.9 bits; conditional E-value: 0.0016 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 k++ + F+++ ++++ F +++l++ F++ +++ f + + +++++ T040460_2 1003 KFKPIPFCSIPFESSPFHSVPLHSILFESVPFHSIPFHSIPFESIPLHS 1051 4444555555555555555555555555555555555555555555444 PP == domain 5 score: 0.2 bits; conditional E-value: 0.046 Pentapeptide_4 18 FsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgc 61 F ++r+++ F+++++ ++ F++ +++++ + + + +++F T040460_2 1079 FHSIRFHSIPFESIPFhsf*vHSIQFHSLSIQSSPVHSIPFLSIPFDSI 1127 7788899999999999999999999999999999999999988888765 PP == domain 6 score: 9.8 bits; conditional E-value: 4.7e-05 Pentapeptide_4 2 dFtncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.klk 73 +F++ f+ + + + F++ + ++ F++++ ++ F++ +++ + + +++F+ + ++ f+ l+ T040460_2 1141 TFHSILFHSSPFLFIAFNSLQVHSNAFQSIQVHSIAFHSVRVHSIALKSFPFHYMPFESIPFHSIPFESiPLH 1213 69999999999999*******************************************9999888888764565 PP == domain 7 score: 11.1 bits; conditional E-value: 1.8e-05 Pentapeptide_4 12 klsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 ++++ F+++ +++ F++++l++ +++ll++ f+ + + +++F+ ++++f+ T040460_2 1191 PFHYMPFESIPFHSIPFESIPLHSIPIESNLLHSIPFESIPFHSMRFHSIRVQSIKFHS 1249 599****************************************************9975 PP == domain 8 score: -0.4 bits; conditional E-value: 0.072 Pentapeptide_4 33 l..........snvnFdkcllsdvdfaeadlkrasFs 59 + + F++ ++ ++f +++ +++F+ T040460_2 1307 F*sisfysfpfESIPFHSIRVHVLSFHSIRIHSIAFH 1343 4444444444444444444444444444444444443 PP == domain 9 score: -3.8 bits; conditional E-value: 0.81 Pentapeptide_4 29 teanlsnvnFdkcllsdvdfaeadlkrasF 58 ++++++ F++c l + f +++ ++F T040460_2 1396 NSTPFHCIPFHSCPLLSIPFLSIQVHCIPF 1425 455555556777777777777766665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 6489.09 // Query: T040460_3 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-15 56.4 16.0 0.051 13.6 0.0 10.9 9 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.0 0.2 1.9e-05 0.31 6 69 .. 533 603 .. 532 617 .. 0.82 2 ! 3.5 0.0 0.0043 70 23 69 .. 612 658 .. 597 667 .. 0.59 3 ? 1.2 0.0 0.023 3.7e+02 53 53 .. 682 682 .. 622 745 .. 0.54 4 ! 5.6 0.2 0.00097 16 13 61 .. 752 805 .. 747 845 .. 0.56 5 ! 2.6 0.0 0.0084 1.4e+02 15 72 .. 949 1012 .. 945 1023 .. 0.39 6 ! 6.8 0.5 0.00041 6.7 53 69 .. 1072 1088 .. 999 1148 .. 0.57 7 ! 3.8 0.0 0.0034 55 31 53 .. 1173 1195 .. 1141 1234 .. 0.48 8 ! 13.6 0.0 3.1e-06 0.051 18 63 .. 1270 1315 .. 1241 1355 .. 0.47 9 ! 4.2 0.0 0.0026 43 14 69 .. 1369 1424 .. 1367 1429 .] 0.54 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 1.9e-05 Pentapeptide_4 6 csfnncklsnvnFsea.......rlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 c n c++ +++F ++ +++ F+++ +++ F++ ++++ +++ +++ +++F+ + ++f+ T040460_3 533 CPVNFCIFVETSFHNVgqsipfhSIHSIPFQSISFHSIPFHSMTVHSIRVQSNQFHSIPFESIPFHFIRFH 603 66677899999999999999999999999999999999999999999999999999999987766666664 PP == domain 2 score: 3.5 bits; conditional E-value: 0.0043 Pentapeptide_4 23 lkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 +++ F+++++++ F++ +++ +f + + ++F +l ++++ T040460_3 612 FHSIPFESIPFHSIPFHSIRVHSISFHSIPFHFIPFVSITLHYITLH 658 44555666666666666666666666666666666666666655554 PP == domain 3 score: 1.2 bits; conditional E-value: 0.023 Pentapeptide_4 53 l 53 + T040460_3 682 V 682 2 PP == domain 4 score: 5.6 bits; conditional E-value: 0.00097 Pentapeptide_4 13 lsnvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgc 61 ++ + F+++ l+++ F + ++ +v+F+ +++v f + + ++sF+ T040460_3 752 FHSSPFCSIPLHSSAFHSFPFhsipfGSVKFNCIPFHSVPFHSIPFGSISFHSI 805 344444444444444444444333334444444444444444444444444443 PP == domain 5 score: 2.6 bits; conditional E-value: 0.0084 Pentapeptide_4 15 nvnFsearlkdcnFteanl.....snvnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg.kl 72 ++F ++ +++ F +++l + + +++ +++ ++ + + +++++ l+++ f+ ++ T040460_3 949 SSEFHSIPFESIPFHYIKLvfipsHPIRVHSNPFQSIRVHSIAFQSIRIHCILLNSSPFHSvQF 1012 3344444444444444444333333333333333333333333333333333333333322222 PP == domain 6 score: 6.8 bits; conditional E-value: 0.00041 Pentapeptide_4 53 lkrasFsgcdlknvnfs 69 +k+++F+ + ++ f+ T040460_3 1072 FKTLPFHSIPFVSILFH 1088 33333333222222222 PP == domain 7 score: 3.8 bits; conditional E-value: 0.0034 Pentapeptide_4 31 anlsnvnFdkcllsdvdfaeadl 53 ++l++ F+++ l+++ f + T040460_3 1173 IPLHSIPFESTPLHSSHFHSITC 1195 33333333333333332222221 PP == domain 8 score: 13.6 bits; conditional E-value: 3.1e-06 Pentapeptide_4 18 FsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdl 63 F+++ +++ F+ +++++ F++c ++ ++ + + +++F+ + T040460_3 1270 FKSIPFHSIAFEPIPFHSIPFHSCPFHCIRVHSIPFHSSRFHSTHF 1315 3333333333333333333333333333333333333333322222 PP == domain 9 score: 4.2 bits; conditional E-value: 0.0026 Pentapeptide_4 14 snvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlknvnfs 69 + + F ++ ++ + F +++l + +F++ ++ f +++ + +F+ + +k++ f+ T040460_3 1369 HSCPFQSIAFHLSPFHSIPLYSIKFHSIRHHSIAFLSIRVHSFPFHSFPFKSIAFH 1424 34445555555555555555666666666666666666666666655555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 7432.96 // Query: T138396_1 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4212.71 // Query: T138396_2 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 3352.54 // Query: T138396_3 [L=750] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 3405.75 // Query: T128044_1 [L=470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 2240.98 // Query: T128044_2 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.50 # Mc/sec: 2683.46 // Query: T128044_3 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.68 # Mc/sec: 1973.13 // Query: T324099_1 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 4407.62 // Query: T324099_2 [L=909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 20.7 0.0 0.00041 19.9 0.0 1.3 1 Gag_MA Matrix protein (MA), p15 0.0019 17.6 0.0 0.0027 17.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 5.1e-08 0.00041 5 91 .. 81 162 .. 75 186 .. 0.83 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 5.1e-08 --HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSS....S--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS CS Gag_MA 5 stPLslllehfkdvraraknlsvevrkkklitlCsseWptlnv....gWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLved 91 PL +l+h++ + +a ++ ++li +C++ Wp ++ + P+eG+ + ++i+++ vf++ +eG + +pY+ ++ sL e+ T324099_2 81 GSPLKCILSHWEKFDLQA------LKNRQLIFFCTMAWPQYSLsdgeKGPPEGSTNYNTILQL--DVFCK-REGKWNEIPYVQAFFSLKEN 162 349999999999988776......46799**********9986333358***********998..58988.99**********99999876 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 3.3e-07 0.0027 3 62 .. 240 299 .. 238 302 .. 0.93 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 3.3e-07 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvl 62 pfs sdl + +++ fs+dp + +++ + t + tw d ll+ +l+ e++ l T324099_2 240 VPFSLSDLKQIREDLGKFSDDPDRYIDVLQGLGQTFDLTWRDVMLLLDQILAFSEKNVAL 299 69*************************************************999997654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 4000.76 // Query: T324099_3 [L=908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 4189.73 // Query: T001381_1 [L=425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.35 10.7 3.0 2.2 8.1 0.0 2.7 2 DUF1582 Protein of unknown function (DUF1582) Domain annotation for each model (and alignments): >> DUF1582 Protein of unknown function (DUF1582) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.0 0.00014 2.2 15 26 .. 209 220 .. 208 221 .. 0.80 2 ? 1.6 1.0 0.015 2.5e+02 1 20 [. 225 244 .. 225 247 .. 0.78 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00014 DUF1582 15 lavpSCvqeGek 26 +a SC+q+G++ T001381_1 209 PAISSCTQGGLF 220 66656******8 PP == domain 2 score: 1.6 bits; conditional E-value: 0.015 DUF1582 1 RaLPsP...dFNLaaRSlavpSC 20 ++LP+P + + RS++ C T001381_1 225 CRLPLPtpkR-KIHLRSPSA--C 244 8999998874.588899987..6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 451 (0.0276585); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 2133.07 // Query: T001381_2 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2128.06 // Query: T001381_3 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.68 # Mc/sec: 1783.81 // Query: T036649_1 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00049 19.5 11.0 0.089 12.2 0.1 3.9 4 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.1 0.036 5.9e+02 6 14 .. 152 160 .. 149 162 .. 0.44 2 ? -0.5 0.0 0.053 8.7e+02 2 18 .. 167 183 .. 166 184 .. 0.60 3 ! 8.7 3.1 6.9e-05 1.1 10 31 .. 198 219 .. 195 221 .. 0.44 4 ! 12.2 0.1 5.5e-06 0.089 2 34 .. 292 324 .. 291 326 .. 0.76 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.036 PT 6 PtaqPTvqP 14 Pt +P++ P T036649_1 152 PTIHPSTHP 160 333333333 PP == domain 2 score: -0.5 bits; conditional E-value: 0.053 PT 2 ptaqPtaqPTvqPTgqP 18 p+ +P+ +P+ P+ P T036649_1 167 PSIYPSIHPSIHPSIHP 183 55567777766666555 PP == domain 3 score: 8.7 bits; conditional E-value: 6.9e-05 PT 10 PTvqPTgqPtaqPTdqPtaqPt 31 P++ P+ Pt P+ qP+ P+ T036649_1 198 PPNHPSIHPTIHPSTQPSIHPS 219 4444444444444444443333 PP == domain 4 score: 12.2 bits; conditional E-value: 5.5e-06 PT 2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaP 34 p+ P+++P++ P+ P+ P+ P+ P+ P T036649_1 292 PSIHPSTHPSTHPSIHPSIHPSIHPSIHPSIHP 324 666788888888888888888888888887666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2235.33 // Query: T036649_2 [L=460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.2 7.8 15.5 25 4.4 0.1 4.7 3 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 1.4 0.0031 50 2 31 .. 149 181 .. 148 185 .. 0.61 2 ? 4.0 3.6 0.002 33 2 23 .. 195 216 .. 193 236 .. 0.69 3 ? 4.4 0.1 0.0015 25 3 19 .. 306 322 .. 293 327 .. 0.47 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.0031 PT 2 ptaqPtaqPTvqP...TgqPtaqPTdqPtaqPt 31 p+ qP+ +P++ P + P+ P+ P+ P+ T036649_2 149 PSIQPSIHPPTHPfihSSHPSIHPSIHPSIHPS 181 778999999999944444444444444444444 PP == domain 2 score: 4.0 bits; conditional E-value: 0.002 PT 2 ptaqPtaqPTvqPTgqPtaqPT 23 p+ Pt +P++qP P++ P+ T036649_2 195 PSIHPTIHPSTQPFIHPPNHPS 216 4445666666666666666665 PP == domain 3 score: 4.4 bits; conditional E-value: 0.0015 PT 3 taqPtaqPTvqPTgqPt 19 + P+ +P++ P+ P+ T036649_2 306 SIHPSIHPSTHPSIRPS 322 22333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 2230.48 // Query: T036649_3 [L=460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.70 # Mc/sec: 1879.97 // Query: T277655_1 [L=6524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.38s 00:00:02.31 Elapsed: 00:00:00.87 # Mc/sec: 21452.94 // Query: T277655_2 [L=6524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:00.81 # Mc/sec: 23042.04 // Query: T277655_3 [L=6523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6523 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.40s 00:00:02.40 Elapsed: 00:00:00.77 # Mc/sec: 24235.32 // Query: T184388_1 [L=7153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 952 (0.0583834); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.89u 0.48s 00:00:03.37 Elapsed: 00:00:01.07 # Mc/sec: 19124.78 // Query: T184388_2 [L=7153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 603 (0.0369803); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.62u 0.48s 00:00:03.10 Elapsed: 00:00:00.84 # Mc/sec: 24361.33 // Query: T184388_3 [L=7153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1182 (0.0724887); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.45u 0.52s 00:00:03.97 Elapsed: 00:00:00.92 # Mc/sec: 22242.95 // Query: T051600_1 [L=1756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.71 # Mc/sec: 7075.52 // Query: T051600_2 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.24s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 7844.93 // Query: T051600_3 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.67 # Mc/sec: 7493.67 // Query: T052143_1 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.61 # Mc/sec: 5759.18 // Query: T052143_2 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.61 # Mc/sec: 5759.18 // Query: T052143_3 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 5322.88 // Query: T037987_1 [L=2075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.59 # Mc/sec: 10061.39 // Query: T037987_2 [L=2075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.62 # Mc/sec: 9574.55 // Query: T037987_3 [L=2074] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.035 14.2 0.0 0.048 13.7 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 3e-06 0.048 5 61 .. 2012 2070 .. 2008 2074 .] 0.85 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 3e-06 EEEEEEEEECTTTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHHTT.SC CS RNase_H 5 vvYtDGsclgnsgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLkalksd 61 ++ D+s++ ++g++ g v+++e+ + s +l++ ++++ EL A+ +aL+ l+++ T037987_3 2012 HLFIDASSQVTEGKRHNGHsVIDRETlVEIESGNLPNSWSAQTCELFALSQALQYLQNQ 2070 689****************88899974446678899******************87665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2074 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.69 # Mc/sec: 8599.07 // Query: T212310_1 [L=1869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.75 # Mc/sec: 7129.19 // Query: T212310_2 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.59 # Mc/sec: 9057.68 // Query: T212310_3 [L=1868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 7634.33 // Query: T220493_1 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 3888.79 // Query: T220493_2 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 4166.41 // Query: T220493_3 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.63 # Mc/sec: 3637.34 // Query: T100207_1 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.75 # Mc/sec: 9032.59 // Query: T100207_2 [L=2367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.66 # Mc/sec: 10259.98 // Query: T100207_3 [L=2367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.6 0.0 1.4 9.2 0.0 2.5 2 Gallidermin Gallidermin Domain annotation for each model (and alignments): >> Gallidermin Gallidermin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.0 8.4e-05 1.4 22 43 .. 492 513 .. 486 516 .. 0.85 2 ? 2.6 0.0 0.0099 1.6e+02 21 43 .. 1303 1325 .. 1300 1327 .. 0.87 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 8.4e-05 XXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 22 sndsgaepRiaSkflCtPGCAk 43 + + +e R+ S+ lC PG Ak T100207_3 492 AGQAHSEQRVSSWGLCMPGKAK 513 5566789************998 PP == domain 2 score: 2.6 bits; conditional E-value: 0.0099 XXXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 21 esndsgaepRiaSkflCtPGCAk 43 +s +s++e + + lC PG Ak T100207_3 1303 KSGQSQSEQHVGPWGLCMPGKAK 1325 5778999999**********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.27s 00:00:01.33 Elapsed: 00:00:00.63 # Mc/sec: 10748.55 // Query: T244183_1 [L=1218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 5530.94 // Query: T244183_2 [L=1218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 6113.14 // Query: T244183_3 [L=1217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6963.26 // Query: T095162_1 [L=326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 11.9 2.6 0.25 10.9 2.6 1.5 1 DUF1725 Protein of unknown function (DUF1725) 0.32 9.6 12.4 0.53 8.8 12.4 1.3 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 2.6 3e-05 0.25 8 19 .] 314 325 .. 313 325 .. 0.97 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 3e-05 DUF1725 8 ELEnIILSEisQ 19 ELE+I+L EisQ T095162_1 314 ELEDIMLNEISQ 325 9**********9 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 12.4 6.5e-05 0.53 241 319 .. 172 249 .. 159 272 .. 0.30 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 6.5e-05 Presenilin 241 eeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeeeses 319 +++++k+e++++++++ + ++++++++++++ ++++++ee++++++++e+++ ++++++++++++++++e+e+++++++ T095162_1 172 KKERRKKEREKKRRRRGRGRRRTTRRRRRRR-RRRRRREERRKKKEKKERRRWRRKRRRRRRRRRKKKQEKEKNKKKKK 249 1111111111111111121221111111111.11111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2359 (0.144671); expected 326.1 (0.02) Passed bias filter: 669 (0.0410278); expected 326.1 (0.02) Passed Vit filter: 308 (0.0188888); expected 16.3 (0.001) Passed Fwd filter: 72 (0.00441555); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.63 # Mc/sec: 1480.37 // Query: T095162_2 [L=326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1492 (0.0915001); expected 326.1 (0.02) Passed bias filter: 348 (0.0213418); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 1665.41 // Query: T095162_3 [L=325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 11.0 22.8 0.16 10.6 22.8 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tr 0.18 10.1 17.2 0.24 9.7 17.2 1.1 1 MCM_bind Mini-chromosome maintenance replisome factor 0.25 12.3 2.6 0.43 11.5 2.6 1.4 1 Pap_E4 E4 protein 0.51 9.6 31.3 0.7 9.2 31.3 1.1 1 DUF1510 Protein of unknown function (DUF1510) 0.62 9.3 24.8 0.85 8.8 24.8 1.1 1 DUF4746 Domain of unknown function (DUF4746) 2.1 8.0 26.2 3 7.5 26.2 1.2 1 RR_TM4-6 Ryanodine Receptor TM 4-6 3.2 5.4 16.3 4.2 5.0 16.3 1.1 1 V_ATPase_I V-type ATPase 116kDa subunit family 3.8 6.2 10.7 4.8 5.9 10.7 1.1 1 DUF913 Domain of Unknown Function (DUF913) 4 6.0 21.0 5.3 5.5 21.0 1.1 1 Presenilin Presenilin 5 6.1 14.5 6.8 5.7 14.5 1.1 1 Zip ZIP Zinc transporter 5.4 6.9 13.7 6.9 6.6 13.7 1.1 1 DDHD DDHD domain 8.7 5.1 7.5 13 4.6 7.5 1.3 1 CLN3 CLN3 protein Domain annotation for each model (and alignments): >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 22.8 0.00012 0.16 46 119 .. 166 246 .. 153 272 .. 0.41 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00012 NPR3 46 kskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededdeeseke........e 119 k+ ++k+++k++r++++k+kk k+++k+++++++++++e+++ +ke+ee ee e++ e++eee+e++e++e e e T095162_3 166 KKGNNKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKEKKE-Eagegee*eE 246 22222233333333333333333333333333333333333333333332222222222222222222222.1344455642 PP >> MCM_bind Mini-chromosome maintenance replisome factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 17.2 0.00018 0.24 86 178 .. 142 234 .. 130 242 .. 0.59 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00018 MCM_bind 86 nstserqtlycvpiPgeneWvkeseenksqekvesststlsnrkkRsleeddeemdvsesekkeekssesekeeeseksetekkskasasesk 178 ++t + ++ly +iP + k+ ++ +++e+++++++ ++++kkR++++++++++ +++e+++e+ ++e+e e+ ++e ek+++++++++k T095162_3 142 QKTKKLKLLYDLAIPLLAIYHKRRKKGNNKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKEK 234 47778899******************8899999999999999999999444444444444333333333322222222222222222222221 PP >> Pap_E4 E4 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 2.6 0.00032 0.43 11 61 .. 156 210 .. 147 237 .. 0.56 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00032 Pap_E4 11 PLLdLlttyt...tpprrppkprpwapkkrcrrRlesd.sdssssssssstptpe 61 PLL +++++ ++r+ k+r + kk++r+R++++ +++++++++++++ ++ T095162_3 156 PLLAIYHKRRkkgNNKERKKKERKRKEKKKKRKRKKKNnKKKKEKKEEEKEEGRK 210 9******998654455555555555655544444444412222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 31.3 0.00052 0.7 46 113 .. 170 237 .. 142 257 .. 0.38 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00052 DUF1510 46 asddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekek..eedaeenaevt 113 +++++++e + ++k++k++ +++n++++ke++++e+ee +ee ee +e ++e ek ee+++++++++ T095162_3 170 NKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEE--EEGEEGEKEVEKeeEEKEKKEKKEE 237 1111111111111111111122222222222222222222222..2222222222220011112222222 PP >> DUF4746 Domain of unknown function (DUF4746) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 24.8 0.00063 0.85 69 139 .. 166 234 .. 132 242 .. 0.44 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00063 DUF4746 69 eeeelveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeeeeeeeeeeeeedke 139 ++ + e +++e++++ek++k+k k+k++++++++ ++ee+e+ +eeee e+e+e e+eeee+e++++ T095162_3 166 KKGNNKERKKKERKRKEKKKKRKRKKKNNKKKKEK--KEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKEK 234 22233333333333333333333333333333222..3333333344444444444333333222222222 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 26.2 0.0022 3 92 159 .. 169 236 .. 135 267 .. 0.49 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0022 RR_TM4-6 92 eeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkkeeaeae 159 ++++ ++++++++e+++++++k+++++++ke+ke+ekee +ke+ee ee +k +k++++k++++++e T095162_3 169 NNKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKEKKE 236 22222222222222222222222222222222222222222222222222222222222222222222 PP >> V_ATPase_I V-type ATPase 116kDa subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 16.3 0.0031 4.2 624 686 .. 159 225 .. 142 260 .. 0.43 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0031 V_ATPase_I 624 llvkPlilklkhkkkkkkkekkkeeee........eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee 686 +++ k ++k++kkk++k+ke+++ + ++++e++eee+ee ++eeee ee e+e e+e T095162_3 159 AIYHKRRKKGNNKERKKKERKRKEKKKkrkrkkknN----KKKKEKKEEEKEEGRKEEEEGEEGEKEVEKE 225 444433333333333333322222222222221111....1111111111111111111111111111111 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 10.7 0.0036 4.8 249 314 .. 166 234 .. 139 269 .. 0.45 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0036 DUF913 249 elgkekaakllved........assasskseasssssssetkeeekssededvemeda.eaetesesdeeeesee 314 + g++k+ +++++ k++++++++++e+keeek++ +++e+ ++ e+e e+e++e+e++e+ T095162_3 166 KKGNNKE------RkkkerkrkEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEgEKEVEKEEEEKEKKEK 234 4444444......01222222211111122222222222222222211111111111122222222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 21.0 0.0039 5.3 221 299 .. 166 237 .. 142 258 .. 0.34 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0039 Presenilin 221 vvlaaeeeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeee 299 + +++++k++e++++ekk++++++++++++++e+++e++++ +++eee ee ++e+e+e+ee+++++++ee T095162_3 166 KK-------GNNKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKEKKEE 237 11.......1111122222222222222222222222222222222222222222222222222222222222222222 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 14.5 0.005 6.8 102 174 .. 164 234 .. 150 264 .. 0.51 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.005 Zip 102 kksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseee 174 + ++ ++k+ kk++ +++e+++k++ ++++ ++++ek+++++e++ +++++ e+ +++ ek+e+eke+++ + T095162_3 164 RRKKGNNKERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEKEKKE--K 234 2333344444444444444444444444444444444444444444444444444444444444444433..1 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 13.7 0.0051 6.9 128 190 .. 172 235 .. 129 276 .. 0.44 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0051 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaee........kveledkeleeeaeekk 190 e+++++ ++++k+++r++++++++++++++e+++++ + + ++e+e++e+e+e++ekk T095162_3 172 ERKKKERKRKEKKKKRKRKKKNNKKKKEKKEEEKEEGR-------KeeeegeegEKEVEKEEEEKEKKEKK 235 11111111111111111111111111111111111111.......01222333444455544444222222 PP >> CLN3 CLN3 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 7.5 0.0095 13 162 229 .. 161 229 .. 131 242 .. 0.41 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0095 CLN3 162 yflllpkkkskkeakaeeeeeeyekleeeeeeee.eseeeelleseaasaaeeeeeeeeselkkslkek 229 y++ +k ++k+++k+e++++e++k+++++++++ +++e++++e+e+ +++eee ee e+e++k+ +ek T095162_3 161 YHKRRKKGNNKERKKKERKRKEKKKKRKRKKKNNkKKKEKKEEEKEEGRKEEEEGEEGEKEVEKEEEEK 229 444444444333333333332222222222222212122222222222222222222223333332222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2923 (0.179259); expected 326.1 (0.02) Passed bias filter: 751 (0.0460567); expected 326.1 (0.02) Passed Vit filter: 382 (0.023427); expected 16.3 (0.001) Passed Fwd filter: 77 (0.00472219); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 1475.83 // Query: T124706_1 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45 # Mc/sec: 2841.76 // Query: T124706_2 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2664.15 // Query: T124706_3 [L=446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2603.94 // Query: T125885_1 [L=1219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 6974.70 // Query: T125885_2 [L=1219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 7117.04 // Query: T125885_3 [L=1218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 7111.21 // Query: T018738_1 [L=2855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 518 (0.0317674); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 15410.70 // Query: T018738_2 [L=2854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-61 206.2 57.3 5.3e-36 124.2 14.1 3.3 3 CCDC144C CCDC144C protein coiled-coil region 5.3e-09 36.3 0.1 5.3e-09 36.3 0.1 4.3 4 DUF3496 Domain of unknown function (DUF3496) 0.009 15.9 1.1 0.009 15.9 1.1 2.9 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 15.7 6.9e-32 3.8e-28 3 96 .. 1874 1967 .. 1874 1968 .. 0.98 2 ! 124.2 14.1 9.8e-40 5.3e-36 184 304 .. 2052 2163 .. 2041 2164 .. 0.96 3 ? -4.2 11.6 1.2 6.4e+03 129 204 .. 2219 2297 .. 2188 2310 .. 0.49 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 6.9e-32 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018738_2 1874 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1967 599*****************************************************************************************95 PP == domain 2 score: 124.2 bits; conditional E-value: 9.8e-40 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018738_2 2052 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2140 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018738_2 2141 KLMNECDHLKESLFQYEREKAER 2163 **********************9 PP == domain 3 score: -4.2 bits; conditional E-value: 1.2 CCDC144C 129 lrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqn 204 + ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ + T018738_2 2219 MAEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQ 2297 4444444444444444444444443222234444444444444444433333334444444444444444444443333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.3 5.9 3 1.6e+04 29 94 .. 1893 1957 .. 1878 1963 .. 0.78 2 ? 1.8 0.5 0.051 2.8e+02 44 108 .. 2139 2207 .. 2125 2208 .. 0.75 3 ? -1.8 9.8 0.68 3.7e+03 8 65 .. 2236 2291 .. 2232 2309 .. 0.78 4 ! 36.3 0.1 9.8e-13 5.3e-09 64 107 .. 2319 2361 .. 2312 2363 .. 0.95 Alignments for each domain: == domain 1 score: -4.3 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018738_2 1893 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 1957 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 1.8 bits; conditional E-value: 0.051 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018738_2 2139 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2207 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -1.8 bits; conditional E-value: 0.68 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018738_2 2236 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2291 666789***********9..89******999984466666665.445567777777776 PP == domain 4 score: 36.3 bits; conditional E-value: 9.8e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018738_2 2319 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 2361 89*****************************.**********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 1.1 1.7e-06 0.009 24 94 .. 2054 2123 .. 2050 2124 .. 0.95 2 ? -2.6 0.2 0.83 4.5e+03 59 80 .. 2165 2186 .. 2135 2194 .. 0.52 3 ? -0.6 5.7 0.21 1.2e+03 13 79 .. 2241 2306 .. 2206 2310 .. 0.78 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 1.7e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018738_2 2054 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2123 68999********************************************************76.9999986 PP == domain 2 score: -2.6 bits; conditional E-value: 0.83 XXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 59 rsvkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018738_2 2165 VVVRQLQQEAADSLKKLTMLES 2186 3456666666666666655554 PP == domain 3 score: -0.6 bits; conditional E-value: 0.21 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018738_2 2241 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2306 3333.45678888888888888888888888888888888888888888999999999999988885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 911 (0.055869); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 14580.02 // Query: T018738_3 [L=2854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-17 61.1 9.6 8.6e-17 61.1 9.6 1.5 2 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 2.4 0.61 9.9e+03 28 107 .. 1435 1463 .. 1422 1472 .. 0.40 2 ! 61.1 9.6 5.3e-21 8.6e-17 96 185 .. 1966 2053 .. 1953 2055 .. 0.93 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 0.61 CCDC144C 28 kyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesyrsrLaaAiqdh 107 +y +++e+ ++le v+s+ +L ++ + T018738_3 1435 QYKKEVEA---------------------------------------------------KQLEPTVQSLDMKLKTTRNTP 1463 22222221...................................................133333444444444444433 PP == domain 2 score: 61.1 bits; conditional E-value: 5.3e-21 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018738_3 1966 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2053 689**********************9554.57..89*****************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.49 # Mc/sec: 16662.88 // Query: T062533_1 [L=1726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 9681.95 // Query: T062533_2 [L=1726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 9495.75 // Query: T062533_3 [L=1726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1726 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 9144.06 // Query: T062674_1 [L=2975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.54 # Mc/sec: 15761.05 // Query: T062674_2 [L=2974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 15193.05 // Query: T062674_3 [L=2974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 15755.76 // Query: T020228_1 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7011.84 // Query: T020228_2 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 6501.89 // Query: T020228_3 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 6501.89 // Query: T259460_1 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-08 33.5 35.5 5.1e-06 26.4 10.2 8.0 8 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 10.2 3.1e-10 5.1e-06 7 98 .. 11 102 .. 8 104 .. 0.94 2 ! 22.7 17.3 4.5e-09 7.3e-05 5 98 .. 97 190 .. 94 194 .. 0.95 3 ! 9.5 8.3 5.8e-05 0.94 5 96 .. 163 254 .. 160 260 .. 0.80 4 ? 2.0 2.4 0.012 2e+02 28 91 .. 274 337 .. 255 343 .. 0.54 5 ! 7.2 18.8 0.00028 4.6 18 97 .. 339 420 .. 335 426 .. 0.79 6 ! 9.6 13.6 5.3e-05 0.86 6 96 .. 362 453 .. 357 468 .. 0.74 7 ! 2.3 1.7 0.0099 1.6e+02 27 87 .. 483 543 .. 456 555 .. 0.50 8 ? -6.5 23.8 1 1.6e+04 18 93 .. 560 638 .. 554 648 .. 0.70 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 3.1e-10 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259460_1 11 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 102 6889999*********************************************************************************9996 PP == domain 2 score: 22.7 bits; conditional E-value: 4.5e-09 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259460_1 97 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 190 6689999*************************************************************************************95 PP == domain 3 score: 9.5 bits; conditional E-value: 5.8e-05 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 s +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259460_1 163 SAGQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 254 55788888888888888888888888888888888888888888888888888888888888888888888888888888888887766665 PP == domain 4 score: 2.0 bits; conditional E-value: 0.012 Mucin-like 28 ytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdps 91 ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p p T259460_1 274 RTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAPG 337 3444444444555555555555555555555555555555555555555555555555555554 PP == domain 5 score: 7.2 bits; conditional E-value: 0.00028 Mucin-like 18 gepsraPsssytapsrapsssygepprd..psssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 ++ sr+P ++ ++ sr+p +++r+ p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259460_1 339 QQDSRTPAPGTQQDSRTPTPGTQQDSRTpcPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQP 420 6778888888888888888888888865114688888888888888888888888888888888888888888888888888 PP == domain 6 score: 9.6 bits; conditional E-value: 5.3e-05 Mucin-like 6 stqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprdpsssyta 96 + + p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p ++ s ++ p ++ s ta p ++ s ta T259460_1 362 QDSRTPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPlPQALSRTAGPLPQVLSRTAGPLPQALSRTA 453 55555677888888888888888888888888888888888888888888888888888663557777777887777777777777666555 PP == domain 7 score: 2.3 bits; conditional E-value: 0.0099 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p T259460_1 483 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGP 543 3344444444444455555555555555555555555555555555555544444444444 PP == domain 8 score: -6.5 bits; conditional E-value: 1 Mucin-like 18 gepsraPsssytapsrapsssygepprdp..sssytapqsapsssytapps.tpsssygeppaapsssytapprdpsss 93 ++ sr+P ++ ++ sr+p +++r+p + s ++p p s ++p ++ s ++ p+ap s + p s+ T259460_1 560 QQDSRTPAPGTQQDSRTPTPGTQQDSRTPcpRLSAGQPDPCPRYSAGQPDPlPQALSRTAGPPAPGSQQDSRTPAPGSQ 638 5778888888888888888888888865411578888888888888888664557788888888876666555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.56 # Mc/sec: 6845.92 // Query: T259460_2 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-20 72.8 70.8 4.1e-07 30.3 16.0 5.7 6 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 0.00092 19.1 17.9 0.00092 19.1 17.9 9.8 9 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 16.0 5e-11 4.1e-07 2 70 .. 12 84 .. 11 85 .. 0.90 2 ! 22.3 26.7 1.6e-08 0.00013 12 68 .. 77 137 .. 55 162 .. 0.42 3 ! 27.7 19.2 3.2e-10 2.6e-06 2 70 .. 111 183 .. 110 202 .. 0.92 4 ! 11.5 4.6 3.8e-05 0.31 2 33 .. 155 188 .. 154 219 .. 0.80 5 ! 19.9 6.1 9.3e-08 0.00076 21 67 .. 373 422 .. 357 439 .. 0.71 6 ! 4.9 0.3 0.0043 35 2 16 .. 596 610 .. 580 629 .. 0.68 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 5e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259460_2 12 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 84 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 22.3 bits; conditional E-value: 1.6e-08 CTD 12 gsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 +srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa T259460_2 77 DSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPA 137 3333333322233333333333333333332222333333333333333333332.333333 PP == domain 3 score: 27.7 bits; conditional E-value: 3.2e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259460_2 111 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 183 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 4 score: 11.5 bits; conditional E-value: 3.8e-05 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gs 33 srTPa +s+++srTPa g + +srTpa g++ +s T259460_2 155 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGTQqDS 188 7899999999999999876658888888877433 PP == domain 5 score: 19.9 bits; conditional E-value: 9.3e-08 CTD 21 dgsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 ++srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259460_2 373 QDSRTPAPGTQqDSRTPAPgsQQDSQTPAPGsQQDSRTPAPGSQL-DSRTP 422 467777777666777777763445777777777777777776666.67776 PP == domain 6 score: 4.9 bits; conditional E-value: 0.0043 CTD 2 srTPawnsaggsrTP 16 srTPa +++++srTP T259460_2 596 SRTPAPGTQQDSRTP 610 344444444444444 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.9 33.5 2 1.6e+04 15 90 .. 6 81 .. 3 89 .. 0.70 2 ? -18.5 48.0 2 1.6e+04 6 92 .. 74 160 .. 69 181 .. 0.63 3 ? 1.6 32.7 0.033 2.7e+02 5 98 .. 128 222 .. 124 224 .. 0.93 4 ! 19.1 17.9 1.1e-07 0.00092 3 98 .. 182 277 .. 180 279 .. 0.94 5 ! 13.6 10.5 6e-06 0.049 7 90 .. 274 358 .. 272 373 .. 0.69 6 ? -0.0 26.8 0.1 8.5e+02 6 98 .. 371 465 .. 368 467 .. 0.85 7 ! 12.5 12.4 1.3e-05 0.1 6 89 .. 494 578 .. 490 599 .. 0.64 8 ? -4.2 7.6 2 1.6e+04 16 77 .. 582 644 .. 571 649 .. 0.59 9 ? -3.1 5.6 0.92 7.5e+03 24 57 .. 962 993 .. 939 1020 .. 0.51 Alignments for each domain: == domain 1 score: -7.9 bits; conditional E-value: 2 Mucin-like 15 ssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdp 90 +s+++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++tp ++ + +++p + + +r+p T259460_2 6 GSVQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTP 81 5777777777777777777777777777777777777777777777777777777777777777766666666666 PP == domain 2 score: -18.5 bits; conditional E-value: 2 Mucin-like 6 stqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpss 92 s q +++p ++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++tp ++ + +++p + + +r+p T259460_2 74 SQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGTQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAP 160 556666666677777777777777777777777777777777777777777777777777766666666666666666666666543 PP == domain 3 score: 1.6 bits; conditional E-value: 0.033 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprdpsssytapp 98 q +++p ++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++ +p s g+p + p+ s ++p p++s ++p T259460_2 128 GTQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGTQQDSQtRPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 222 4567889999*************************************************999899****************************96 PP == domain 4 score: 19.1 bits; conditional E-value: 1.1e-07 Mucin-like 3 sssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 ++ + + + p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259460_2 182 PGTQQDSQTRPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPD 277 5566778899***********************************************************************************996 PP == domain 5 score: 13.6 bits; conditional E-value: 6e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprdp 90 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p ++ s ++ p ++ s ta p ++ T259460_2 274 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPlPQALSRTAGPLPQVLSRTAGPLPQ 358 5677777777777777777777777777777777777777777777777777777777663446666666666666666666555 PP == domain 6 score: -0.0 bits; conditional E-value: 0.1 Mucin-like 6 stqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqs..apsssytappstpsssygeppaapsssytapprdpsssytapp 98 s q +++p ++ sr+P ++ ++ s++p + +++r+p ++ ++ p s ++p p s g+p + p+ s ++p p+ s ++p T259460_2 371 SQQDSRTPAPGTQQDSRTPAPGSQQDSQTPAPGSQQDSRTPAPGSQLDSRtpCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPD 465 4678899999999999******999999999999999999886665554433789999999999999999999999***********99999996 PP == domain 7 score: 12.5 bits; conditional E-value: 1.3e-05 Mucin-like 6 stqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprd 89 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p ++ s ++ p ++ s ta p + T259460_2 494 AGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPlPQALSRTAGPLPQVLSRTAGPLP 578 4566666667777777777777777777777777777777777777777777777776655344555555566555555555554 PP == domain 8 score: -4.2 bits; conditional E-value: 2 Mucin-like 16 sygepsraPsssytapsrapsssygepprdpsssytap.qsapsssytappstpsssygeppa 77 s ++ + aP s ++ +ap p+ s ++p + + s ta p ++ s +++pa T259460_2 582 SRTAGPLAPGSQQDSRTPAPGTQQDSRTPCPRLSAGQPdPLPQALSRTAGPLPQALSWTARPA 644 556666666666666666666666666666666666665556666666666666666665554 PP == domain 9 score: -3.1 bits; conditional E-value: 0.92 Mucin-like 24 Psssytapsrapsssygepprdpsssytapqsap 57 Ps+s t+ + p +s+ p+++p +s a+ ++p T259460_2 962 PSPSKTNRK--PVHSICRPKEEPPESREAACREP 993 333333333..33333333333333333332222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.60 # Mc/sec: 6503.62 // Query: T259460_3 [L=1364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-23 82.8 84.9 6.4e-07 29.7 17.6 5.9 5 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 17.6 3.9e-11 6.4e-07 2 70 .. 198 270 .. 190 271 .. 0.92 2 ! 28.6 14.7 8.5e-11 1.4e-06 2 67 .. 264 333 .. 263 350 .. 0.91 3 ! 27.4 17.9 2.1e-10 3.4e-06 2 70 .. 430 502 .. 421 503 .. 0.90 4 ! 27.1 16.4 2.6e-10 4.2e-06 2 67 .. 485 554 .. 484 624 .. 0.94 5 ? -1.8 0.0 0.27 4.4e+03 14 18 .. 879 883 .. 878 890 .. 0.55 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 3.9e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259460_3 198 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 270 8****************98779******99889*****985567*******9*********9988.9****976 PP == domain 2 score: 28.6 bits; conditional E-value: 8.5e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259460_3 264 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 333 8***************997669******99889*****985557*******99********8777.99999 PP == domain 3 score: 27.4 bits; conditional E-value: 2.1e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +++++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259460_3 430 SRTPAPGTQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 502 8***************9876699****999889*****985557*******99********8777.9****976 PP == domain 4 score: 27.1 bits; conditional E-value: 2.6e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259460_3 485 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 554 8***************997669*****999889*****985557*******99********8777.99999 PP == domain 5 score: -1.8 bits; conditional E-value: 0.27 CTD 14 rTPaw 18 +TPaw T259460_3 879 QTPAW 883 34444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.63 # Mc/sec: 6193.92 // Query: T070081_1 [L=2069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 10569.75 // Query: T070081_2 [L=2068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-05 24.2 3.9 2.2e-05 24.2 3.9 2.7 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 3.1 7.5 13.4 3.1 7.4 2.8 2.7 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 3.9 2.7e-09 2.2e-05 2 18 .] 874 890 .. 873 890 .. 0.94 2 ? 0.6 0.2 0.075 6.1e+02 11 17 .. 905 911 .. 905 912 .. 0.91 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 2.7e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T070081_2 874 ACYKCQKSGHQAKECPQ 890 7***************7 PP == domain 2 score: 0.6 bits; conditional E-value: 0.075 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dC+ T070081_2 905 HWKSDCS 911 ******7 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 2.8 0.00038 3.1 1 18 [. 871 888 .. 871 890 .. 0.96 2 ? 4.8 3.0 0.0025 21 1 19 [. 894 911 .. 894 914 .. 0.85 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00038 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k H a++C T070081_2 871 PPGACYKCQKSGHQAKEC 888 89**************** PP == domain 2 score: 4.8 bits; conditional E-value: 0.0025 ---B-TTT-SSBS-TTT-- CS zf-CCHC_5 1 ppglCpRCkkgkHwardCh 19 pp Cp C g Hw++dC T070081_2 894 PPKPCPICA-GPHWKSDCS 911 577799996.********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.76 # Mc/sec: 7784.47 // Query: T070081_3 [L=2068] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00059 19.3 0.0 0.00099 18.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 6.1e-08 0.00099 138 181 .. 752 795 .. 745 795 .. 0.94 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 6.1e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + fi+qsa+di+ T070081_3 752 KNPAQFMARLAATLRRFTALDPKRSKGRLILNTHFITQSAPDIK 795 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2068 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.59 # Mc/sec: 10027.45 // Query: T100325_1 [L=4862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-74 249.3 13.5 6.9e-74 248.8 13.5 1.1 1 Transposase_22 L1 transposable element 0.0079 16.6 4.9 0.016 15.6 4.9 1.4 1 Syntaxin-6_N Syntaxin 6, N-terminal ------ inclusion threshold ------ 0.036 14.2 5.3 0.074 13.2 5.3 1.4 1 KLRAQ Predicted coiled-coil domain-containing prote 0.05 13.6 10.3 0.083 12.9 10.3 1.3 1 Tropomyosin_1 Tropomyosin like 0.11 12.3 0.9 0.18 11.5 0.9 1.3 1 DUF1465 Protein of unknown function (DUF1465) 0.11 12.5 3.8 0.21 11.7 3.8 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.74 9.5 4.6 1.5 8.5 4.6 1.5 1 SKA2 Spindle and kinetochore-associated protein 2 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 248.8 13.5 3e-77 6.9e-74 93 284 .. 4672 4862 .] 4668 4862 .] 0.87 Alignments for each domain: == domain 1 score: 248.8 bits; conditional E-value: 3e-77 ............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqd 185 e +k++ ++k+l e t++ + k + +e++t ++ asls+r+d+leervs +ede++e+++e k+rek +k+++qslq+i+d T100325_1 4672 EPMTKKLKTLKKKLDEWITRITNAEKSLK-ELMELKTTAQELPDECASLSNRCDQLEERVSVMEDEMNEMKHEKKFREKIIKRNKQSLQEIWD 4763 44445555555555555555555555555.34556666666666666********************************************** PP HHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETT CS Transposase_22 186 tvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkG 278 +vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+rtP+r++s+ra++rhii+r+tkv++ +k+l+a+rek rv+ kG T100325_1 4764 YVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARKANIQIQEIQRTPQRYSSRRATPRHIILRFTKVEMEEKMLRAAREKDRVAHKG 4856 ********************************************************************************************* PP EEEEEE CS Transposase_22 279 kPirlt 284 kPirlt T100325_1 4857 KPIRLT 4862 ****98 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 4.9 6.8e-06 0.016 11 94 .. 4675 4764 .. 4672 4767 .. 0.81 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 6.8e-06 Syntaxin-6_N 11 qkslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevree 94 k+l++l++ +++w +++ + ++s ++ el+ t +eL ++ s+++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + T100325_1 4675 TKKLKTLKKKLDEWiTRITNAEKSlKELMELKTTAQELPDECASLSNRCDQLEERVSVMEDemneMKHEKKFREKIIKRNKQSLQEIWDY 4764 68999*********8899999999999*****************************9998733222344667777777777777776655 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 5.3 3.2e-05 0.074 25 87 .. 4693 4753 .. 4670 4764 .. 0.60 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 3.2e-05 KLRAQ 25 qakeaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee..Kkvskskkksesq 87 + e++lke + k ++ + E sL+ r +qLe rv+++ +e++e + Kk+ ++k+ ++ T100325_1 4693 TNAEKSLKELMELK-TTAQELPDECASLSNRCDQLEERVSVMEDEMNEMKheKKF---REKIIKR 4753 34445555544333.34456667899********************987654663...2222222 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 10.3 3.6e-05 0.083 1 71 [. 4677 4750 .. 4677 4763 .. 0.81 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3.6e-05 Tropomyosin_1 1 klnsLkleaeealeraeeleekvkeleq.enleke..qeiksLqkknqqleeevekleeklkeakekaeesekk 71 kl++Lk +e+ +r ++e+++kel + +++++e +e +sL+++ +qlee v +e++++e+k++++ ek T100325_1 4677 KLKTLKKKLDEWITRITNAEKSLKELMElKTTAQElpDECASLSNRCDQLEERVSVMEDEMNEMKHEKKFREKI 4750 899*********************97541444443448**************************9988766664 PP >> DUF1465 Protein of unknown function (DUF1465) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.9 7.6e-05 0.18 95 151 .. 4703 4759 .. 4684 4762 .. 0.84 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 7.6e-05 -----------HHHHHHHHHHHHHHHHHHHHHHHHHT-SSXXXX.XXXXXXXXXXXX CS DUF1465 95 asdaeavaeLpeelqeLierserLqervrrLdreireeeeaaeaaenpvaeqlerLe 151 + +++ +eLp+e ++L +r ++L erv +++e+ e +++++ +e+ +++ + L+ T100325_1 4703 MELKTTAQELPDECASLSNRCDQLEERVSVMEDEMNEMKHEKKFREKIIKRNKQSLQ 4759 45567889*******************************999999999988888887 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 3.8 9e-05 0.21 34 100 .. 4674 4740 .. 4669 4743 .. 0.94 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 9e-05 HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 34 ldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 + +k ++l+++l+e ++ ++ k+ +++++ k a+el +e ++l+++ ++le++++ +e+e++++ T100325_1 4674 MTKKLKTLKKKLDEWITRITNAEKSLKELMELKTTAQELPDECASLSNRCDQLEERVSVMEDEMNEM 4740 67999***********************************************************986 PP >> SKA2 Spindle and kinetochore-associated protein 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 4.6 0.00062 1.5 10 71 .. 4670 4733 .. 4668 4760 .. 0.88 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00062 SKA2 10 lFqkaesdLdyvqhrLekefqqsypdna..eNpvkLlerlkkvkeelqaLkeqceellaekkel 71 F+ ++++L++++++L++ + ++++ ++ +++++L + +++ +e ++L+++c++l ++ + T100325_1 4670 KFEPMTKKLKTLKKKLDEWITRITNAEKslKELMELKTTAQELPDECASLSNRCDQLEERVSVM 4733 6999*********************9999***************************98765544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 655 (0.0401693); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 2.06u 0.46s 00:00:02.52 Elapsed: 00:00:00.99 # Mc/sec: 14049.85 // Query: T100325_2 [L=4862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.38s 00:00:02.04 Elapsed: 00:00:00.88 # Mc/sec: 15806.09 // Query: T100325_3 [L=4861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-17 64.0 5.4 1.5e-17 63.4 5.4 1.2 1 Transposase_22 L1 transposable element 7e-08 32.1 2.1 1.1e-06 28.2 0.7 2.2 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.4 5.4 1.9e-21 1.5e-17 2 76 .. 4613 4683 .. 4613 4708 .. 0.94 Alignments for each domain: == domain 1 score: 63.4 bits; conditional E-value: 1.9e-21 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alke 76 Gkk+ rk++nsk +++s+P+ke+ss at e++++++df+elr+e++++++y++lke+++++ ke++ ++k+ T100325_3 4613 GKKQ---SRKTGNSKNQSTSPPPKERSSLTAT--EQSWMENDFDELREEGFRRSNYSKLKEEVRTNDKEVKnFEKK 4683 7888...9************************..************************************989986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.7 1.3e-10 1.1e-06 3 95 .. 444 545 .. 442 564 .. 0.81 2 ! 3.0 0.0 0.0069 56 177 221 .. 2526 2584 .. 2520 2585 .. 0.84 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.3e-10 -TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEE.EBCCGCCCSBB-GGGGGG CS RVT_1 3 Kkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllkl.DlkkaFdsvpleellrkl 92 K+g +++yR isl+++d k+l+k++a++++++++k ++++q g + + ++ ++++++ ++ kk+k + l + k Fd+++ ++ +++l T100325_3 444 KPGkdttkKENYRSISLMNIDAKILSKILANQIQQYIKKMIHYDQLGSIAEMQGWLNIcksiNVIHHI-DRIKKQKPYDHLnKCGKEFDKIQPPFMIKTL 542 55555666789****************************************9999999*996555554.5555544444431489999999999999988 PP G-E CS RVT_1 93 taf 95 +++ T100325_3 543 NTL 545 765 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0069 HHHHHHHHHHHHHHHHHTT--BEGGG-EEE....................ESSEEETTEE CS RVT_1 177 keelqelleaveewlkesglkinpeKtklvlf...............sgkseevkyLGvt 221 ++ +++ll+ + ++ k sg+kin +K+ + + +++ +e+kyLG+ T100325_3 2526 NTFIKKLLDLMNKYSKVSGYKINIQKSVPF-L*pras*epn*ksnpiYNSYKEIKYLGIY 2584 455889999*******************99.99999999999865544499*******86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.73 # Mc/sec: 19049.99 // Query: T103189_1 [L=2537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-06 25.6 2.6 1.5e-05 24.7 2.6 1.5 1 zf-CCHC Zinc knuckle 0.0049 17.0 0.0 0.0085 16.2 0.0 1.3 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.27 10.8 3.9 0.58 9.8 3.9 1.5 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 2.6 2.8e-09 1.5e-05 2 18 .] 820 836 .. 819 836 .. 0.94 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 2.8e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C + GH+a++Cp+ T103189_1 820 ACYTCRKSGHWAKECPQ 836 7***************7 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 1.6e-06 0.0085 7 89 .. 909 986 .. 904 986 .. 0.83 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.6e-06 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 7 lkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 +++ ++ k+i +l+ t A ++ ++ + P + a+ ++ Gi + ++ ++ ++ +l + f+ s+l++p++pv+llG T103189_1 909 VTLTVESKPIPFLINTEAPHSTLPSFQGPVS----LASITVVGIDDQASKPLKTPQLWcQLRQYSFK--HSFLVIPTCPVPLLG 986 67889999***********************....************97777766443034444455..5************99 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 3.9 0.00011 0.58 1 18 [. 817 834 .. 817 835 .. 0.97 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00011 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C C k Hwa++C T103189_1 817 PPGACYTCRKSGHWAKEC 834 89**************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.89 # Mc/sec: 8154.97 // Query: T103189_2 [L=2536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0032 16.9 0.0 0.0054 16.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 3.3e-07 0.0054 138 181 .. 707 750 .. 700 750 .. 0.94 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 3.3e-07 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ l + rr+t dp+ + + + + fi+qsa+di+ T103189_2 707 KNPAQFMTCLAATLRRFTALDPKRSKGRLILKIHFITQSAPDIK 750 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.64 # Mc/sec: 11336.04 // Query: T103189_3 [L=2536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 10992.52 // Query: T036338_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.62 # Mc/sec: 12292.34 // Query: T036338_2 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.78 # Mc/sec: 9767.17 // Query: T036338_3 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.29s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 10581.10 // Query: T184413_1 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.54 9.9 2.5 0.96 9.1 2.5 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 2.5 5.9e-05 0.96 7 17 .. 783 793 .. 783 795 .. 0.92 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 5.9e-05 DUF1725 7 MELEnIILSEi 17 M LE+I+LSEi T184413_1 783 MNLEDIMLSEI 793 88********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 805 (0.0493683); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 4277.18 // Query: T184413_2 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 4577.33 // Query: T184413_3 [L=912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 5324.65 // Query: T004115_1 [L=3285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 974 (0.0597326); expected 326.1 (0.02) Passed bias filter: 319 (0.0195634); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.86 # Mc/sec: 10927.71 // Query: T004115_2 [L=3285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.85 # Mc/sec: 11056.27 // Query: T004115_3 [L=3284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 350 (0.0214645); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.71 # Mc/sec: 13232.35 // Query: T383220_1 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-62 209.5 20.1 3.2e-26 91.8 3.3 4.1 4 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.8 3.3 2e-30 3.2e-26 1 123 [. 1006 1130 .. 1006 1134 .. 0.97 2 ! 7.6 0.2 7.8e-05 1.3 121 147 .. 1599 1625 .. 1597 1630 .. 0.92 3 ! 63.3 0.2 9.6e-22 1.6e-17 184 269 .. 1891 1976 .. 1882 1978 .. 0.92 4 ! 57.3 0.6 6.1e-20 1e-15 267 321 .. 2015 2069 .. 2007 2070 .. 0.95 Alignments for each domain: == domain 1 score: 91.8 bits; conditional E-value: 2e-30 Tektin 1 Wkanneelykeaeaereeserlrn..esrrlideteektkktqedsnkrLeeRiediefwkeeLekeleelkeeieaLeeekrrlekalealeeplhi 96 W++n +++y++a a+ ++ser + +s++l e+++ ++ tq+ds+ r +eR++d++ w +eL+ e+e+l++e+++L ++k+rle+al+a+e p++i T383220_1 1006 WFQNCYARYHQAFADCNQSERELQghKSQQLAAEIQALAQPTQQDSKCRVGERLQDMHSWNSELQGEVEALAAETDLLLAQKQRLEHALDAMEVPFSI 1103 ********************9764449*********************************************************************** PP Tektin 97 aqeclelRekRqgidlvhDevekeLlk 123 a++++++ ++ q+ +lv+D+ve+eLlk T383220_1 1104 ATDNMQCNQRHQHANLVRDHVETELLK 1130 *************************98 PP == domain 2 score: 7.6 bits; conditional E-value: 7.8e-05 Tektin 121 LlkEveliegvqellkrtleqaeeqlr 147 L +E+eli+++qellkr + qa q+r T383220_1 1599 LPQEAELIRNIQELLKRVIVQAVSQIR 1625 679**********************98 PP == domain 3 score: 63.3 bits; conditional E-value: 9.6e-22 Tektin 184 sykpgaerldetsstpeeWekftkdnieraekeraasaqLreaidsilkqtandlraqaeavnealrkrieeteeaknkleeqlkk 269 + a++++ ++stpe+ +kft+dn+ ra++er +sa+L +d il++t++dl q++avn a+ +r+ee+e+a++kl+++l+k T383220_1 1891 AHLSMANSWPRSASTPETRTKFTQDNLCRAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLQK 1976 455556778889************************************************************************98 PP == domain 4 score: 57.3 bits; conditional E-value: 6.1e-20 Tektin 267 lkkvleeiaeleknieeLekaiadkeaplklaqtRlenRtqRpnvElcrDeaqyr 321 +++l+ei+++e+n+ +L++ai+dkeapl +aqtRl ++Rpn+ElcrD+aq+r T383220_1 2015 CRQMLREITDQEHNMVALKEAIKDKEAPLHIAQTRLYLLSHRPNMELCRDAAQFR 2069 6799*************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.59 # Mc/sec: 10827.51 // Query: T383220_2 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-17 63.3 0.0 1.8e-10 40.0 0.1 2.1 2 Tektin Tektin family ------ inclusion threshold ------ 0.16 12.0 0.0 0.26 11.3 0.0 1.2 1 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.0 1.2e-08 9.6e-05 147 194 .. 1746 1793 .. 1736 1819 .. 0.91 2 ! 40.0 0.1 2.2e-14 1.8e-10 321 382 .. 2141 2202 .. 2130 2203 .. 0.95 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.2e-08 Tektin 147 rllraakyeLekdlsdKeealeiDeeclslkntsanisykpgaerlde 194 rl+r+ + +e+d+sdK ea+++De+c + +++s++++ +p l+ T383220_2 1746 RLNREHMEICEMDWSDKVEAYNLDETCGRHRSQSTEVQAHPALHHLPR 1793 789*************************************99888876 PP == domain 2 score: 40.0 bits; conditional E-value: 2.2e-14 Tektin 321 rLveEvkeleetieaLkeklaeaeaslkaLertqleleediavKanslfiDeekclelRksl 382 +Lv+E++el ++i+aL ekl +ae+sl++Le+ +++le+d+ +nslf+D+++c+ + + + T383220_2 2141 KLVSELEELYKSITALWEKLLQAEQSLHNLEDIHMSLEKDVTAMTNSLFLDRQNCMAHHTCY 2202 79******************************************************998766 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 3.1e-05 0.26 66 134 .. 2120 2187 .. 2102 2197 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 3.1e-05 ATG16 66 asssqsnskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleae 134 +sssq +++ s+k + + +++ +l +el+elyks + l ++ll+++++l+ le+ ++ e+ ++++++ T383220_2 2120 TSSSQ-EEAPSDKPQLTPPNTPKLVSELEELYKSITALWEKLLQAEQSLHNLEDIHMSLEKDVTAMTNS 2187 22222.3445667788889999999*****************************999999999888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.76 # Mc/sec: 8405.57 // Query: T383220_3 [L=2233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 10303.60 // Query: T007017_1 [L=8137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-11 42.0 0.0 1.3e-10 41.3 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 7.7e-15 1.3e-10 60 106 .. 812 858 .. 800 862 .. 0.90 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 7.7e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007017_1 812 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 858 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.48u 0.40s 00:00:02.88 Elapsed: 00:00:00.98 # Mc/sec: 23753.65 // Query: T007017_2 [L=8137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 24.8 0.0 1.9e-05 24.2 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 1.1e-09 1.9e-05 170 217 .. 96 143 .. 92 150 .. 0.90 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 1.1e-09 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS-HHHHHH CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeedeefeeiae 217 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + +fee++ T007017_2 96 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGPKFEEVSW 143 789********************************9998888888765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.36u 0.42s 00:00:02.78 Elapsed: 00:00:00.84 # Mc/sec: 27712.59 // Query: T007017_3 [L=8136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.34u 0.46s 00:00:02.80 Elapsed: 00:00:00.94 # Mc/sec: 24761.40 // Query: T212073_1 [L=6328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.41s 00:00:02.43 Elapsed: 00:00:00.91 # Mc/sec: 19893.77 // Query: T212073_2 [L=6327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.40s 00:00:02.31 Elapsed: 00:00:00.78 # Mc/sec: 23205.73 // Query: T212073_3 [L=6327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.34s 00:00:02.36 Elapsed: 00:00:00.91 # Mc/sec: 19890.63 // Query: T376183_1 [L=1313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-175 584.1 18.5 2e-175 584.1 18.5 1.7 2 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.5 0.21 3.5e+03 339 368 .. 333 362 .. 332 398 .. 0.80 2 ! 584.1 18.5 1.2e-179 2e-175 1 439 [. 792 1213 .. 792 1215 .. 0.98 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.21 DUF4641 339 pvpkaqlpthrpgppclsvhrgEfssGdln 368 p++ +q+p+ p p+++ + + ssG+l T376183_1 333 PGLTVQVPACSPPPRSKPALQTDTSSGELM 362 677899999999999999999999999975 PP == domain 2 score: 584.1 bits; conditional E-value: 1.2e-179 DUF4641 1 egrpgspvddeedaldflsqladEaaaivqqlsdldargvrrnpspescaaelsa.lwadleagpsgRgalalssveskqasaaplhlsglergrawg 97 egrpg+pvdd+ ++ d++++ladE+a+i+++ s v+ +pspe+++a+ s+ +wadle+gps+Rgal++s++e++qasa+plhls+++ g+aw+ T376183_1 792 EGRPGTPVDDQAGGGDYSFYLADEPATIMPPSS------VQGHPSPEGATAKGSTdIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWE 883 8********************************......*********************************************************** PP DUF4641 98 npkrgtksrmvvsedvqrps.eeglvglpsdsessDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvv 194 np+rg+ksr+++++d+q+ps e+++ +++ds+s+DE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vv T376183_1 884 NPERGSKSRLSFQVDPQQPSaEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVV 981 ********************66667778899******************************************************************* PP DUF4641 195 erqavgElessssKKmqsvvwgkggsrPSypgatAaaaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLl 292 er+avgEl++ s KKmqs+vwgk+g+rPS++ga a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+Ll T376183_1 982 ERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA-----AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLL 1074 *********************************.....9*********************************************************** PP DUF4641 293 GkskkvsllpsgpkqskhtgtGKksvarktresqavakeDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlP 390 Gks + pk++kh+++GKk+++rktresqa+a+eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++P T376183_1 1075 GKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVP 1165 ***99.......************************************************************************************** PP DUF4641 391 RgpapSgdqeppvrpprpeeqqqppqGaqgCprcvvLqkeiddLkeqLa 439 R +a Sgd++ppv+pprpe+qqqpp GaqgCprc++Lq+ei+dL++qL+ T376183_1 1166 RCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRCILLQREIEDLRDQLV 1213 ******************7777766.*********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 5869.17 // Query: T376183_2 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 5686.98 // Query: T376183_3 [L=1312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 5864.70 // Query: T192682_1 [L=5664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.34s 00:00:02.12 Elapsed: 00:00:01.00 # Mc/sec: 16203.74 // Query: T192682_2 [L=5664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-46 158.0 0.4 2.5e-46 157.4 0.4 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 4.2e-17 62.5 3.0 8.1e-17 61.6 3.0 1.3 1 GP41 Retroviral envelope protein 0.0017 17.5 0.1 0.0036 16.4 0.1 1.6 1 IN_DBD_C Integrase DNA binding domain ------ inclusion threshold ------ 0.038 13.9 0.3 0.076 12.9 0.3 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 157.4 0.4 6e-50 2.5e-46 1 168 [. 1666 1837 .. 1666 1838 .. 0.88 Alignments for each domain: == domain 1 score: 157.4 bits; conditional E-value: 6e-50 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddr.cpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rv 92 +vtw+d +evyvndsvw+pgp d + p++peeegm+ n+sigyr+ppiclg gcl q w+v vpt + s+ + h vsg +++ + T192682_2 1666 PVTWLDPLVEVYVNDSVWMPGPRD-N*GPTHPEEEGMLTNVSIGYRFPPICLGPDAGCLNCDKQSWMVYVPTHN-GSKASIHAVSGRTFQSldTI 1758 69********************75.6779******************************************976.68999******998762134 PP HERV-K_env_2 93 nylqdfsy....qrslkfrpkgkpcpkeipk.eskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 +y ++ sy ++ kf+p+ kpcp++ k k evl we+c+ansa +lqn+ +g ii waprg+f ncsgq + c T192682_2 1759 KY-REHSYvmthRQINKFKPNKKPCPRQAIK*SGK-LEVLTWEDCIANSAAVLQNKSYGIIIHWAPRGRFAVNCSGQHKDC 1837 44.55566222144569**********98877766.7*****************************************999 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.6 3.0 2e-20 8.1e-17 2 173 .. 2037 2204 .. 2036 2232 .. 0.89 Alignments for each domain: == domain 1 score: 61.6 bits; conditional E-value: 2e-20 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWn 98 a v+l ++q+a +v++ +kn + + + +id kl +++n l + v+ +G+ +++l+++++++C n C+T+ yna+e We ++ hl+g + T192682_2 2037 AVVALHSSIQTAGFVDSWQKNSSNLWNSKSQIDEKLANQINNLCQTVIWMGDRIMNLEHRIQMQCDWNTSDFCITPSSYNATEhHWEIIRLHLQG--K 2132 5689******************************************************************************************9..6 PP XHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 99 ntevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 + ++ +d++kl++ ++++++ l+ +d l + l n + l+W++ ++ ia + + v l +l l+ T192682_2 2133 EDNLTVDIAKLKKRGFEASQAHLTLLPGADILAGATDGLSNTNP-LKWIKT--MGGSTIANFILVCVCLCCLFLV 2204 889999*****************************978776655.59*995..5555555555556666666554 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 8.9e-07 0.0036 12 48 .. 1520 1556 .. 1516 1558 .. 0.88 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 8.9e-07 TS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 12 sglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 +++ G +++++ +G +c+ P +++ ++wvP R ++ T192682_2 1520 QNQNLGKGKIITWDQGFACISPEGNQLPVWVPTRHLK 1556 566667789*************************998 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.3 1.9e-05 0.076 26 87 .] 1597 1656 .. 1592 1656 .. 0.77 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 1.9e-05 HERV-K_REC 26 kaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 p tw q+k+l+ +a l t +++a + + s+ v+l++ e+ ++ y+a T192682_2 1597 HGTPLTWGQMKRLAHIAKDNLRSQNKLLTTSNLMVAMMAVTSLAVSLPIA--EADQNYPYWA 1656 56799****************98877777766667777777888888764..5566777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.81u 0.36s 00:00:02.17 Elapsed: 00:00:00.91 # Mc/sec: 17806.31 // Query: T192682_3 [L=5664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.37s 00:00:02.06 Elapsed: 00:00:00.78 # Mc/sec: 20774.03 // Query: T303383_1 [L=3158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-31 107.9 1.8 2.4e-18 66.0 0.0 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.0 0.0 1.5e-22 2.4e-18 262 320 .. 1820 1878 .. 1816 1880 .. 0.89 2 ! 41.0 0.5 5.8e-15 9.5e-11 183 271 .. 2189 2275 .. 2188 2279 .. 0.90 Alignments for each domain: == domain 1 score: 66.0 bits; conditional E-value: 1.5e-22 HHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT--.-EEETTTEE CS Transposase_22 262 dkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfq.PrllyPakl 320 +il+avr+k +vt+kGkPirl ad+saetl+arr w+ ++ ilk++++q +ly akl T303383_1 1820 GRILRAVRQKHQVTYKGKPIRLIADFSAETLQARRGWGLIFSILKQNNYQ*K-ILYSAKL 1878 69********************************************999744.5566665 PP == domain 2 score: 41.0 bits; conditional E-value: 5.8e-15 HHHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 183 iqdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 i+d++ r nl++i ++ + +e+ k l + n+ii+enf l+k++++ + e++++P +++ k + ++hi +++kv+ k+k lk+vrek T303383_1 2189 IWDYI-R*QNLQIISIPRD-EERSKSLIKLSNEIIDENFSSLAKDLDIYLEEAQQSPGKYNVK-SLPQHIKSKLSKVKVKEKNLKSVREK 2275 56666.3349*******75.57889999********************************987.689**********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.70 # Mc/sec: 12906.43 // Query: T303383_2 [L=3158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-25 87.8 14.4 1.9e-19 69.6 0.1 4.0 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 7.0 0.061 1e+03 8 116 .. 1598 1701 .. 1591 1719 .. 0.67 2 ! 69.6 0.1 1.2e-23 1.9e-19 190 262 .. 1749 1820 .. 1749 1822 .. 0.97 3 ! 21.6 0.1 4.6e-09 7.5e-05 275 307 .. 2279 2311 .. 2273 2317 .. 0.89 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.061 .XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX..XXXXXXXXXXX.......... CS Transposase_22 8 tnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele..alk..ekeentekqlkiik.ekqent 95 n + n + t +k+++s Pa dp++++ el ++++ k l+e + k+l+ + k +++e + + iik ++ T303383_2 1598 KN-NSSNMIKQGSITSPKDHTSYPAM----DPNQEEISELPDKEFRRLIIKLLREITRKGEKQLK*sFFKiqNMDEKFSREIVIIK*KQ---- 1681 22.22223345556778888999988....99999***********************999**99975542266667777776665432.... PP .........XXXXXXXXXXXX CS Transposase_22 96 skqvmemnkellelktkvdel 116 q++em +l e++ ++++ T303383_2 1682 -SQLLEMTYTLREIQNAMENF 1701 .35666666666666655554 PP == domain 2 score: 69.6 bits; conditional E-value: 1.2e-23 TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHH CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkd 262 Pnlr+i v+e+ +e+ k en+l+ +ieenfP l+++++++iqe+++tP ++ skr+s+rhi++ ++kv++k+ T303383_2 1749 PNLRIISVPEE-KEKSKSWENLLEALIEENFPGLARDLDIQIQEAQKTPGKFISKRSSPRHIVIGLSKVKMKE 1820 9********95.6889********************************************************8 PP == domain 3 score: 21.6 bits; conditional E-value: 4.6e-09 EETTEEEEEEE---HHHHHHHHHHHHHHHHHHH CS Transposase_22 275 tlkGkPirltadlsaetlkarrewtdviqilke 307 ++ Pi lt d+saet+ arr+w d++++l e T303383_2 2279 IYRRTPISLTVDFSAETFLARRKWDDILKVLIE 2311 47889************************9977 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 12724.65 // Query: T303383_3 [L=3157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-14 53.6 0.1 3.4e-14 52.8 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.7e-13 49.0 1.7 4.2e-08 32.3 0.0 2.5 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.8 0.1 4.2e-18 3.4e-14 85 221 .. 2904 3065 .. 2900 3066 .. 0.86 Alignments for each domain: == domain 1 score: 52.8 bits; conditional E-value: 4.2e-18 B-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-..T.............TEEECTTEEEEE CS RVT_1 85 leellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrel..rkra.......kgvtllrYaDDilil 173 + +l++l++++++ + +++ ++++ ++ ++ r+nge+ + ++ g++qG+ lSP+lfn++++ l r + +k++ +gv+ll+ aD ++++ T303383_3 2904 IPSQLKTLNKLGIKGTYLKITRAIY-DKLTANRLNGEKLKAFPLRPGTRQGCLLSPVLFNIVLEVLTRAIg*DKEIkdiqigkEGVKLLLLADHMILY 3000 667899********99999999999.77779999***99****************************9997767778899****************** PP ESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEE CS RVT_1 174 skskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvt 221 +++++ +l + + e+ k +g+kin +K+ ++l+ ++ s+++ky G+ T303383_3 3001 LEKPKDfTTKLSDLINEFSKVAGCKINVQKSVVFLYtnndiaenkikKAipytiVSNKFKYVGID 3065 ***888466666667777777*************9999988887765115666899999999985 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 0.1 6.6e-07 0.0054 318 353 .. 1875 1910 .. 1872 1922 .. 0.87 2 ? -4.4 0.1 0.77 6.3e+03 142 161 .. 2151 2170 .. 2147 2179 .. 0.78 3 ! 32.3 0.0 5.1e-12 4.2e-08 312 353 .. 2318 2359 .. 2318 2367 .. 0.93 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 6.6e-07 TEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT CS Transposase_22 318 aklsiiidGeikvfidktklrdylstrPalkrllke 353 +k s+i +Geik f dk++lr++ +++ k+ ke T303383_3 1875 SKTSFINEGEIKPFSDKQMLREFATIKQHYKNCQKE 1910 589**********************99888876666 PP == domain 2 score: -4.4 bits; conditional E-value: 0.77 HHHHHHHHHHHHHHHHHHHH CS Transposase_22 142 ssrideleervsaaedeiee 161 ++r+ + eer+s +e e T303383_3 2151 NNRLCQAEERISELEGRYFE 2170 69999*******99976544 PP == domain 3 score: 32.3 bits; conditional E-value: 5.1e-12 -EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT CS Transposase_22 312 PrllyPaklsiiidGeikvfidktklrdylstrPalkrllke 353 Pr+l+ a+ls++ +Geik f k++lrd+++tr l+++lk T303383_3 2318 PRILHTARLSFVNEGEIKSFPSKQMLRDFITTRAVLHEILKG 2359 9***************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.22u 0.27s 00:00:01.49 Elapsed: 00:00:00.69 # Mc/sec: 13089.33 // Query: T004510_1 [L=107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 542 (0.0332393); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 637.73 // Query: T004510_2 [L=107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 9.4 49.3 1.6e+04 -6.5 49.3 2.7 1 KRTAP Keratin-associated matrix Domain annotation for each model (and alignments): >> KRTAP Keratin-associated matrix # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.5 49.3 1 1.6e+04 11 59 .. 40 91 .. 2 107 .] 0.50 Alignments for each domain: == domain 1 score: -6.5 bits; conditional E-value: 1 KRTAP 11 lgYGsg.gyG.glgcgygcgygsirrlGyGsGggygyGsGYG.gyGygcgrp 59 +g G+g g+G g+g g+g+g++++++ G G G g g+G+G G g+G g g + T004510_2 40 VGAGMGaGVGaGMGAGVGAGVRAGMGAGVGAGVGAGVGAGVGaGVGTGVGAG 91 3333333333333333333333332222222222222222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.65 # Mc/sec: 470.94 // Query: T004510_3 [L=106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.62 # Mc/sec: 489.11 // Query: T136058_1 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.4 8.2 6.4 1.1 9.2 0.6 2.7 2 Integrin_alpha Integrin alpha cytoplasmic region Domain annotation for each model (and alignments): >> Integrin_alpha Integrin alpha cytoplasmic region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.6 6.9e-05 1.1 3 12 .. 173 182 .. 172 183 .. 0.91 2 ? 1.0 0.7 0.031 5e+02 5 10 .. 1042 1047 .. 1042 1049 .. 0.94 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 6.9e-05 CCHHHCHHHH CS Integrin_alpha 3 GFFKRnykpq 12 GFFKR +k++ T136058_1 173 GFFKRERKKT 182 9*******96 PP == domain 2 score: 1.0 bits; conditional E-value: 0.031 HHHCHH CS Integrin_alpha 5 FKRnyk 10 FKR+++ T136058_1 1042 FKRQRP 1047 *****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.68 # Mc/sec: 6213.89 // Query: T136058_2 [L=1477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 6213.89 // Query: T136058_3 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.71 # Mc/sec: 5947.30 // Query: T222365_1 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 8360.46 // Query: T222365_2 [L=1958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.29s 00:00:01.33 Elapsed: 00:00:00.85 # Mc/sec: 6590.01 // Query: T222365_3 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 9178.11 // Query: T100165_1 [L=7822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.36s 00:00:01.86 Elapsed: 00:00:00.61 # Mc/sec: 36684.28 // Query: T100165_2 [L=7821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-06 25.4 2.0 0.037 13.6 0.0 4.6 6 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.0 0.48 7.8e+03 10 20 .. 3352 3362 .. 3351 3362 .. 0.74 2 ? -2.0 0.0 0.2 3.2e+03 13 26 .. 3433 3446 .. 3424 3446 .. 0.82 3 ! 13.6 0.0 2.3e-06 0.037 2 28 .. 3543 3569 .. 3542 3573 .. 0.85 4 ! 4.1 0.0 0.0023 37 2 18 .. 3895 3911 .. 3892 3914 .. 0.40 5 ? -3.0 0.1 0.39 6.4e+03 20 31 .. 4132 4143 .. 4131 4143 .. 0.63 6 ! 3.5 0.0 0.0036 58 5 34 .. 4853 4882 .. 4853 4884 .. 0.88 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 0.48 E-TTEEEETTE CS Hexapep 10 IgpfaviggnV 20 ++p a++g+nV T100165_2 3352 LRPDAHLGPNV 3362 57888888887 PP == domain 2 score: -2.0 bits; conditional E-value: 0.2 TEEEETTEEE-TTE CS Hexapep 13 faviggnVkIGdnv 26 +++++++V +G+++ T100165_2 3433 GVHLRPDVCLGPDC 3446 79999999999998 PP == domain 3 score: 13.6 bits; conditional E-value: 2.3e-06 EEE-TTEEE-TTEEEETTEEE-TTEEE CS Hexapep 2 tvIGsnvlIgpfaviggnVkIGdnvkI 28 +++G +v+++++++++++V IG++v + T100165_2 3543 VHLGPDVHLWHGVHLRPGVYIGPHVQL 3569 678999999999999999999999965 PP == domain 4 score: 4.1 bits; conditional E-value: 0.0023 EEE-TTEEE-TTEEEET CS Hexapep 2 tvIGsnvlIgpfavigg 18 +++G +v++gp++ + + T100165_2 3895 VQLGPDVHLGPGVNLKH 3911 33333444444444433 PP == domain 5 score: -3.0 bits; conditional E-value: 0.39 EEE-TTEEEETT CS Hexapep 20 VkIGdnvkIgag 31 +++G++v+I ag T100165_2 4132 IHLGPDVHIRAG 4143 566777777765 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0036 -TTEEE-TTEEEETTEEE-TTEEEETTEEE CS Hexapep 5 GsnvlIgpfaviggnVkIGdnvkIgagvvi 34 G +v +gp ++ g+ V++G++v +g+ v++ T100165_2 4853 GPDVNLGPEVYSGSAVHLGRGVFLGPRVYL 4882 778899999999999***********9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.64u 0.33s 00:00:01.97 Elapsed: 00:00:00.62 # Mc/sec: 36087.99 // Query: T100165_3 [L=7821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.34s 00:00:02.00 Elapsed: 00:00:00.64 # Mc/sec: 34960.24 // Query: T173077_1 [L=211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 13.9 0.1 0.063 13.3 0.1 1.3 1 SoxG Sarcosine oxidase, gamma subunit family Domain annotation for each model (and alignments): >> SoxG Sarcosine oxidase, gamma subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.1 3.9e-06 0.063 26 88 .. 98 157 .. 63 163 .. 0.82 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 3.9e-06 SoxG 26 kgvaskesvlwlaPdeflvidqegkaalaalaealaelasvvdlShgrvlisisGakaeavla 88 ++a + v++laP lv++ + l la+a a + v++ ++rv++++ G++ ++ l T173077_1 98 AALAHRD-VVALAPHPVLVAV--LVHRLLGLARAAAATRAEVGVRGRRVRVRVRGRRRRRRLV 157 4455555.9*******99999..7788889999999999*****************9998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 572 (0.0350791); expected 326.1 (0.02) Passed bias filter: 301 (0.0184595); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1231.91 // Query: T173077_2 [L=210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 1177.99 // Query: T173077_3 [L=210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 1177.99 // Query: T052557_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2534.70 // Query: T052557_2 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.51 # Mc/sec: 2485.00 // Query: T052557_3 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2534.70 // Query: T091123_1 [L=2652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 13548.07 // Query: T091123_2 [L=2652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 13548.07 // Query: T091123_3 [L=2652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 31.0 0.0 2.4e-07 30.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.3 0.0 1.5e-11 2.4e-07 134 176 .. 2594 2645 .. 2564 2647 .. 0.88 Alignments for each domain: == domain 1 score: 30.3 bits; conditional E-value: 1.5e-11 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 134 qGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 qG++lSPllfn++++ l r +r++ ++v+l+++aDD+ ++ ++ T091123_3 2594 QGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMNVHLEN 2645 ***********************99**********************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 13548.07 // Query: T317353_1 [L=2724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 13671.76 // Query: T317353_2 [L=2724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.55 # Mc/sec: 14168.91 // Query: T317353_3 [L=2724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.26s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 14168.91 // Query: T100531_1 [L=1478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-05 25.0 2.9 4.1e-05 23.9 2.9 1.4 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 2.9 2.5e-09 4.1e-05 48 96 .. 191 241 .. 186 249 .. 0.92 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 2.5e-09 HHHHHGGGGSTEEECTTS..SSSEEEESSBEEEEEEEEESSSCTTC-EEEE CS RnaseA 48 leevkavCktknvtcknn..rkncheskskvsvttCkltggskkpnCkYke 96 l++++++C+t+ +c+n+ ch+s++ v+vt+C ++g++ +C+Y++ T100531_1 191 LTTIADFCRTPPLPCTNSpsMCSCHNSTHDVNVTDCFASTGTRPLHCHYQK 241 5789************9887889********************999***95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 7977.94 // Query: T100531_2 [L=1478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 22.2 0.0 0.00028 21.2 0.0 1.5 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.0 1.7e-08 0.00028 6 46 .. 145 189 .. 141 190 .. 0.87 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.7e-08 HHHHHB-TTSSS...SSCCHHHHHHHHT.TCTSSST-SEEEEEES CS RnaseA 6 Ferqhvdskksk...tsekyCnkamkrr.nmtkkrCkkvntfihe 46 F+++h+d+++s +++yC+ +m+ r +++++C++++tfih T100531_2 145 FSTRHLDNPRSWvprGHHRYCDVMMRCRwLIYRGKCEQIHTFIHR 189 999*****99878899999*******9934566**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 7977.94 // Query: T100531_3 [L=1478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 7977.94 // Query: T228570_1 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7630.71 // Query: T228570_2 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-05 23.1 0.0 0.0001 22.4 0.0 1.3 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.0 6.4e-09 0.0001 40 100 .. 1101 1160 .. 1092 1161 .. 0.76 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 6.4e-09 ..EEEEEEEETTEEEEEEEEEE.EEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 40 vkkaesllqGiggatetkqska.ievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 v a ++ Gi g+ ++ ++ +l+++ f + s+l++p++p++llGr++L+kl + L T228570_2 1101 VSLAPITVVGIDGQASKPLKTPpLWCQLGQHSFMH--SFLVIPTCPLPLLGRNILTKLSASL 1160 45777889999999866555550444556666666..*********************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 7486.74 // Query: T228570_3 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 7935.94 // Query: T235628_1 [L=4004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.27s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 20454.93 // Query: T235628_2 [L=4003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.57 # Mc/sec: 19744.66 // Query: T235628_3 [L=4003] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4003 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 20449.83 // Query: T044797_1 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4560.82 // Query: T044797_2 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4644.64 // Query: T044797_3 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 4834.22 // Query: T229997_1 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0077 14.8 9.3 0.011 14.3 9.3 1.0 1 CCDC154 Coiled-coil domain-containing protein 154 ------ inclusion threshold ------ 1 8.5 17.7 1.5 8.0 17.7 1.1 1 GAS Growth-arrest specific micro-tubule binding 1.3 7.7 14.8 1.8 7.2 14.8 1.1 1 Spc7 Spc7 kinetochore protein 2.4 8.4 4.8 3.1 8.0 0.9 2.1 2 BLOC1_2 Biogenesis of lysosome-related organelles comp 3.3 7.1 9.2 4.7 6.5 9.2 1.1 1 Exonuc_VII_L Exonuclease VII, large subunit 4.8 7.7 9.3 7.6 7.0 7.6 1.9 1 Syntaxin-6_N Syntaxin 6, N-terminal 5 7.6 9.8 9.4 6.8 9.8 1.4 1 DUF883 Bacterial protein of unknown function (DUF883) 6.4 6.4 18.7 13 5.4 18.7 1.4 1 IncA IncA protein Domain annotation for each model (and alignments): >> CCDC154 Coiled-coil domain-containing protein 154 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 9.3 5.2e-06 0.011 317 432 .. 342 460 .. 333 468 .. 0.77 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 5.2e-06 CCDC154 317 lqesleavqlagdlarrEmea...alellqEKsqaleesvaelatqlkdLsdhvlalswrldLqeqtLslklseakeewekaerrsleklvrwekeveah 413 + ++a+q +++++ ++ + l+ ++le++ + l+++l+dLs++ l r q L+ +ea +e + rr le+ r ++ e+h T229997_1 342 VSTAMAATQELLLQLQKDNRDgrqRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEYLEQH 441 5555666664444444444441113344444489******************8888877777778********99999999999999**99********* PP CCDC154 414 Lrevqekvdslkrqieavs 432 r++qe+ ++l q+ a T229997_1 442 SRQLQEQWEELSSQVRAGD 460 **************97655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 17.7 0.00074 1.5 27 130 .. 352 457 .. 346 459 .. 0.84 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00074 GAS 27 lIkslKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyek..dkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 l +l ++ + ++++++ ekl+ +++e ++l++ L+ + + L ++ + + + ++ + +++r +++ + l++ e ++e l+q+ +++++ +e T229997_1 352 LLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQplQGEAREAARERAERVRRRLEEAERHKEYLEQHSRQLQEQWEE 451 666899999999***************************9876666655555555545667778899999999999999999999999999999999999 PP GAS 125 lykkfe 130 l+++ + T229997_1 452 LSSQVR 457 998765 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 14.8 0.00091 1.8 145 251 .. 350 457 .. 342 461 .. 0.77 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00091 Spc7 145 eenlegleedkelLekqeeeldellpeleeekaelekeleklqeaaeelesidkeeLeelreelaelkee.ieekkkelaelqeeleeleekieelkekk 243 +e l +l++d++ ++++el++l+ le+e ++l+++l++l e++++l ++ + l+ e +e+ e e+ +++l+e ++ +e le+ +l+e+ T229997_1 350 QELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEAREAARErAERVRRRLEEAERHKEYLEQHSRQLQEQW 449 5556689999999999999999999999999999999999999988888887777777777777665544145557778888888888888888888888 PP Spc7 244 seleeeia 251 +el ++++ T229997_1 450 EELSSQVR 457 88777765 PP >> BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.9 0.0015 3.1 12 62 .. 343 393 .. 340 400 .. 0.90 2 ? 1.7 0.2 0.15 3e+02 30 67 .. 415 452 .. 408 457 .. 0.73 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0015 BLOC1_2 12 eaeleatvedyklLekmNkaasekykklkdvaaslekeleklnekyeelqp 62 + ++at+e + L+k N+ ++ ++l++ + +le+e+e ln++ ++l++ T229997_1 343 STAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSE 393 567899**************************************9998876 PP == domain 2 score: 1.7 bits; conditional E-value: 0.15 BLOC1_2 30 kaasekykklkdvaaslekeleklnekyeelqpylqqi 67 +aa e+ + +++ ++++e+ e+l++ + +lq++ +++ T229997_1 415 EAARERAERVRRRLEEAERHKEYLEQHSRQLQEQWEEL 452 56677777777777788888888888777777776655 PP >> Exonuc_VII_L Exonuclease VII, large subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 9.2 0.0023 4.7 164 257 .. 356 453 .. 324 465 .. 0.53 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0023 Exonuc_VII_L 164 l.......eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerlelleekkerleel 252 l +++kq+lekl + l+ +e l+++ q l+e e++l r+ +++++ l+ +++ +e+ e+ ++rl++++++ e le+++++l+e+ T229997_1 356 LqkdnrdgRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQ----PLQGEAREAaRERAERVRRRLEEAERHKEYLEQHSRQLQEQ 448 1222223345555666666666555555555555555555555553333322....22222222223555555566655555555666666666666 PP Exonuc_VII_L 253 eekle 257 e+l+ T229997_1 449 WEELS 453 66655 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 7.6 0.0037 7.6 16 97 .. 344 447 .. 340 448 .. 0.74 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0037 Syntaxin-6_N 16 kleslyrrw.eelledtss..stseeldetrteLrkalrsiewdledLeetv...................riveknpskfkidekelsrrrafvee 90 ++ + +++ +l++d+++ ++++el+++++ L+++ +s+++ l+dL e +++++ ++++ + +e +r+++++e+ T229997_1 344 TAMAATQELlLQLQKDNRDgrQRKQELEKLMRGLEAESESLNQRLQDLSERErsllrrrsqaaqplqgearEAARERAERVRRRLEEAERHKEYLEQ 440 44444444424666666666568*************************9988555666666666666655555566778899999999999999999 PP Syntaxin-6_N 91 vreevke 97 ++++e T229997_1 441 HSRQLQE 447 9999875 PP >> DUF883 Bacterial protein of unknown function (DUF883) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 9.8 0.0046 9.4 2 66 .. 383 450 .. 347 458 .. 0.87 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0046 DUF883 2 eleaeleslladleellkeaadeageeaeelReraeealerarerlsdaeea...vaerakeaaeaad 66 +l++ l++l + ++ll++ ++ a+ e+Re a+e++er+r rl++ae++ ++++++++ e+ + T229997_1 383 SLNQRLQDLSERERSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAERHkeyLEQHSRQLQEQWE 450 57788999999999999999999999999999999999999999999988765657777777776655 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 18.7 0.0062 13 83 185 .. 346 447 .. 327 458 .. 0.77 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0062 IncA 83 lselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrlqqkiae 182 +++ ++ l +l++ ++ ++r +ele+ + le + esl + l+++ +r sl ++ +++a+ ++ ++ ++e+ ++ r +le+ +++++l+q+ + T229997_1 346 MAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEA-REAARERAERVRRRLEEAERHKEYLEQHSRQ 444 56778888899999999999999999999999999999999999999999999888888888866554.6777777777777777777777777777666 PP IncA 183 lqr 185 lq+ T229997_1 445 LQE 447 665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1052 (0.0645161); expected 326.1 (0.02) Passed bias filter: 471 (0.0288851); expected 326.1 (0.02) Passed Vit filter: 103 (0.00631669); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 6899.93 // Query: T229997_2 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.23s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 7823.27 // Query: T229997_3 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-47 160.9 5.5 1.9e-47 160.2 5.5 1.3 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 160.2 5.5 1.2e-51 1.9e-47 16 121 .] 570 675 .. 568 675 .. 0.99 Alignments for each domain: == domain 1 score: 160.2 bits; conditional E-value: 1.2e-51 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelra 115 cd+qlr vq++++slmee+arad+e+rlfgg++a a+r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra T229997_3 570 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAIRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRA 669 59************************************************************************************************** PP TMEM191C 116 rGllPa 121 +GllP+ T229997_3 670 NGLLPT 675 *****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 7396.55 // Query: T099415_1 [L=1819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 9292.59 // Query: T099415_2 [L=1818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 8815.24 // Query: T099415_3 [L=1818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 9456.34 // Query: T227654_1 [L=4423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1189 (0.0729179); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.39s 00:00:02.12 Elapsed: 00:00:00.65 # Mc/sec: 19466.85 // Query: T227654_2 [L=4423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0036 17.2 6.1 23 4.9 0.1 5.9 6 Med28 Mediator complex subunit 28 Domain annotation for each model (and alignments): >> Med28 Mediator complex subunit 28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.019 3.1e+02 68 96 .. 1481 1509 .. 1476 1523 .. 0.83 2 ? 1.6 0.0 0.015 2.4e+02 59 96 .. 1557 1591 .. 1544 1618 .. 0.81 3 ! 2.8 0.1 0.0062 1e+02 56 96 .. 1629 1669 .. 1609 1681 .. 0.79 4 ? 1.5 0.0 0.016 2.6e+02 61 96 .. 1678 1710 .. 1672 1721 .. 0.83 5 ? 1.1 0.0 0.021 3.5e+02 57 96 .. 1764 1803 .. 1751 1835 .. 0.71 6 ! 4.9 0.1 0.0014 23 56 96 .. 1841 1881 .. 1820 1893 .. 0.79 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.019 Med28 68 eqlatqlkalrekgqnvfgdgtkidstid 96 +l+t+l++ r++gqn++ ++ ds++ T227654_2 1481 SKLTTRLRSPRQHGQNLLQGYANQDSAVK 1509 579***************99999999985 PP == domain 2 score: 1.6 bits; conditional E-value: 0.015 Med28 59 lmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 l k +++ +l+t+l++ r+ gqn++ ++ ds + T227654_2 1557 LTKTVRS---KLTTRLRSPRQCGQNLLQGYAHQDSVVK 1591 4455555...8***************999999999885 PP == domain 3 score: 2.8 bits; conditional E-value: 0.0062 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ ds+i T227654_2 1629 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSAIK 1669 56777777777789****************99999999986 PP == domain 4 score: 1.5 bits; conditional E-value: 0.016 Med28 61 kHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 k +++ +l+t+l++ r+ gqn++ ++ ds+i T227654_2 1678 KTVRS---KLTTRLRSPRQCGQNLLQGYAHQDSAIK 1710 44444...8****************99999999985 PP == domain 5 score: 1.1 bits; conditional E-value: 0.021 Med28 57 ellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 +ll+ + + +l+t+l++ r+ gqn++ ++ +s++ T227654_2 1764 NLLQVYAKTVWSKLTTRLRSPRQCGQNLLQGYANQESAVK 1803 5677777777789**************9988888888775 PP == domain 6 score: 4.9 bits; conditional E-value: 0.0014 Med28 56 eellmkHlqktseqlatqlkalrekgqnvfgdgtkidstid 96 ++ll+ + + +l+t+l+ r+ gqn++ ++ dsti T227654_2 1841 QNLLQGYAKTVQSKLTTRLRQPRQCGQNLLQGYANQDSTIK 1881 45777777777789*************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 861 (0.0528026); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.63 # Mc/sec: 20084.84 // Query: T227654_3 [L=4422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1098 (0.0673372); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.39s 00:00:01.96 Elapsed: 00:00:00.63 # Mc/sec: 20080.30 // Query: T263223_1 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 8316.84 // Query: T263223_2 [L=1627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 7160.88 // Query: T263223_3 [L=1627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.73 # Mc/sec: 6376.12 // Query: T368972_1 [L=3535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.64 # Mc/sec: 15801.62 // Query: T368972_2 [L=3535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.29s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 15094.08 // Query: T368972_3 [L=3534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.77 # Mc/sec: 13130.10 // Query: T078831_1 [L=606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.20s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 3210.49 // Query: T078831_2 [L=606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.63 # Mc/sec: 2751.85 // Query: T078831_3 [L=606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 2796.23 // Query: T089857_1 [L=2792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.69 # Mc/sec: 11576.00 // Query: T089857_2 [L=2792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.67 # Mc/sec: 11921.55 // Query: T089857_3 [L=2791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.38s 00:00:01.73 Elapsed: 00:00:00.71 # Mc/sec: 11245.88 // Query: T119771_1 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0002 21.4 0.0 0.075 13.2 0.0 2.2 2 SEA SEA domain Domain annotation for each model (and alignments): >> SEA SEA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.0 4.6e-06 0.075 5 38 .. 41 74 .. 38 75 .. 0.93 2 ! 6.0 0.0 0.00081 13 3 35 .. 1261 1293 .. 1259 1296 .. 0.86 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.6e-06 SEA 5 gtfkitnleytedlgnpsSeefkelarsieelln 38 +tf+itn+ ++ l np S +++ l++ i ++++ T119771_1 41 VTFTITNEAFSAALLNPASWKHQLLRKIIHHQVR 74 89*************************9999875 PP == domain 2 score: 6.0 bits; conditional E-value: 0.00081 SEA 3 ftgtfkitnleytedlgnpsSeefkelarsiee 35 +++ ++i ++yt+ l++++S+ef +l+ ++++ T119771_1 1261 YEVWLQILVQPYTKALEDKTSPEFWALQGQLTR 1293 667789999***************999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 12128.31 // Query: T119771_2 [L=3010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 11039.87 // Query: T119771_3 [L=3009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.64 # Mc/sec: 13450.37 // Query: T260780_1 [L=292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.60 # Mc/sec: 1392.27 // Query: T260780_2 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.60 # Mc/sec: 1387.50 // Query: T260780_3 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.53 # Mc/sec: 1570.76 // Query: T278483_1 [L=2200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 8621.68 // Query: T278483_2 [L=2200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.71 # Mc/sec: 8864.54 // Query: T278483_3 [L=2200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.79 # Mc/sec: 7966.87 // Query: T185135_1 [L=6232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.42s 00:00:02.31 Elapsed: 00:00:00.78 # Mc/sec: 22857.30 // Query: T185135_2 [L=6231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.41s 00:00:02.29 Elapsed: 00:00:01.01 # Mc/sec: 17649.34 // Query: T185135_3 [L=6231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.43s 00:00:02.37 Elapsed: 00:00:00.84 # Mc/sec: 21221.23 // Query: T090338_1 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 3625.14 // Query: T090338_2 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.71 # Mc/sec: 3416.88 // Query: T090338_3 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 4182.73 // Query: T376367_1 [L=6381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.42s 00:00:02.34 Elapsed: 00:00:00.84 # Mc/sec: 21732.09 // Query: T376367_2 [L=6381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.39s 00:00:02.45 Elapsed: 00:00:00.80 # Mc/sec: 22818.70 // Query: T376367_3 [L=6381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.02u 0.44s 00:00:02.46 Elapsed: 00:00:00.90 # Mc/sec: 20283.28 // Query: T249670_1 [L=3683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.34s 00:00:01.94 Elapsed: 00:00:00.89 # Mc/sec: 11838.69 // Query: T249670_2 [L=3683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.74 # Mc/sec: 14238.43 // Query: T249670_3 [L=3682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.40s 00:00:02.01 Elapsed: 00:00:00.76 # Mc/sec: 13859.97 // Query: T336911_1 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.55 # Mc/sec: 3224.94 // Query: T336911_2 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.70 # Mc/sec: 2533.88 // Query: T336911_3 [L=620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 3284.66 // Query: T226508_1 [L=23774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-12 46.1 0.0 5.6e-12 45.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.13 12.4 0.1 0.24 11.5 0.1 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.5 0.0 6.9e-16 5.6e-12 121 210 .. 17750 17839 .. 17745 17840 .. 0.95 Alignments for each domain: == domain 1 score: 45.5 bits; conditional E-value: 6.9e-16 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +p n kvkev++gk+e+pa f l+ea r+yt p++pe +a + + f+ qs++dir+ lq+ + +k ++ a kvyn r+ T226508_1 17750 VKPVNYDKVKEVTRGKDENPALFQGLLVEALRKYTNAGPDTPEGQALLGIHFLIQSSPDIRRNLQKAAMGPSSPMKRRLNIAFKVYNNRD 17839 68****************************************************************999999999999999999999986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.1 2.9e-05 0.24 9 82 .. 15338 15408 .. 15338 15423 .. 0.80 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 2.9e-05 rve 9 qvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytska 82 qvD+ +++ +++g+ ++ + id++s++ +a++ + +a+t+i+ + + + +++g p + sD+ + + +k+ T226508_1 15338 QVDYIgTLP--SWKGQRFVPTGIDTYSGYGFAYPAHNA-SAKTTIRGFTEYIIHRHGI-PHSIASDQDTHFMAKE 15408 567774555..777789*********************.6666666666666677776.*********9999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 5.91u 0.54s 00:00:06.45 Elapsed: 00:00:01.34 # Mc/sec: 50756.25 // Query: T226508_2 [L=23773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.085 12.2 0.0 0.13 11.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 7.9e-06 0.13 168 221 .. 14824 14872 .. 14813 14873 .. 0.98 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 7.9e-06 TEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 168 DDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 DDi+++ +s++e+ + l+ ++++l + +in++K++ s++vk+LGv+ T226508_2 14824 DDIMLIGSSEQEVANTLDLLVRHLCARRWEINMTKIQGP-----STSVKFLGVQ 14872 ***************************************.....9*******96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.28u 0.51s 00:00:05.79 Elapsed: 00:00:01.05 # Mc/sec: 64771.92 // Query: T226508_3 [L=23773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.1 0.6 0.00016 21.1 0.6 2.0 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.6 9.8e-09 0.00016 1 19 [] 12528 12546 .. 12528 12546 .. 0.98 2 ? -2.1 0.5 0.19 3.1e+03 11 19 .] 12800 12808 .. 12800 12808 .. 0.93 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 9.8e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+W +LE+IILS+ sQ T226508_3 12528 SFVGTWIKLETIILSKLSQ 12546 7*****************9 PP == domain 2 score: -2.1 bits; conditional E-value: 0.19 DUF1725 11 nIILSEisQ 19 +IILS+ sQ T226508_3 12800 TIILSKLSQ 12808 6*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.52u 0.58s 00:00:06.10 Elapsed: 00:00:01.36 # Mc/sec: 50007.73 // Query: T226942_1 [L=11987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.12u 0.49s 00:00:03.61 Elapsed: 00:00:00.94 # Mc/sec: 36481.67 // Query: T226942_2 [L=11987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.48s 00:00:03.83 Elapsed: 00:00:01.03 # Mc/sec: 33293.95 // Query: T226942_3 [L=11987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.20u 0.43s 00:00:03.63 Elapsed: 00:00:00.86 # Mc/sec: 39875.31 // Query: T317234_1 [L=1481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 6833.69 // Query: T317234_2 [L=1480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 8820.89 // Query: T317234_3 [L=1480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 7176.32 // Query: T244185_1 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 6023.94 // Query: T244185_2 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6385.37 // Query: T244185_3 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.46 # Mc/sec: 6940.62 // Query: T317439_1 [L=2962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 15692.18 // Query: T317439_2 [L=2962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.52 # Mc/sec: 16295.73 // Query: T317439_3 [L=2962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.51 # Mc/sec: 16615.25 // Query: T295157_1 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 7181.27 // Query: T295157_2 [L=1230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6766.96 // Query: T295157_3 [L=1229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 7031.92 // Query: T346962_1 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-25 88.2 5.1 3e-24 85.7 5.1 1.9 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.7 5.1 1.8e-28 3e-24 4 211 .. 147 370 .. 142 389 .. 0.81 Alignments for each domain: == domain 1 score: 85.7 bits; conditional E-value: 1.8e-28 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 k+ +yRpisl ++d k+ln++++++++++++k+++++q+gf g + + ++ + ++++++ k+k++++++ D++kaFd++++++ +++l +++++ T346962_1 147 KK-RNYRPISLRNIDAKILNQILVHQIQQHIKKIIHHEQVGFTLGMQGWFNIsksmNLIHHINRIKNKNHMIISTDVEKAFDKIQHSFMIKTLSKMGIEG 245 33.79**************************************************77777777777777******************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHH CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleavee 189 + +++ik+++ ++++++ +n e+ e + ++ ++ ++ + + + + r +r++ ++++ll + ++i+ +++++ +lle + + T346962_1 246 TYHRVIKAIYDKPTANIVLNMEKVESILPENWIKARTPTFNTSIQHSTGSPTRVIRQEKeikdtqiskEEIKLLPFTNNMIIYLENPKDsPRKLLELINK 345 ***************999988876666555555544444444444444444444444334455555558*****************66659999****** PP HHHHTT--BEGGG-EEE........ CS RVT_1 190 wlkesglkinpeKtklvlfsg...k 211 + k sg+kin +K ++l+++ + T346962_1 346 FSKVSGYKINVHKLVALLYTNsdqT 370 **************99987333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4708.93 // Query: T346962_2 [L=822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 5003.41 // Query: T346962_3 [L=822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 5003.41 // Query: T322059_1 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-05 23.9 224.2 0.003 17.6 6.0 21.0 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.5 0.42 6.8e+03 7 16 .. 97 105 .. 87 123 .. 0.63 2 ? -2.2 0.2 0.29 4.8e+03 16 46 .. 402 432 .. 394 434 .. 0.82 3 ! 8.0 1.0 0.00018 2.9 4 24 .. 832 852 .. 831 860 .. 0.88 4 ? -0.4 2.7 0.078 1.3e+03 1 25 [. 882 905 .. 882 905 .. 0.75 5 ? -1.1 0.2 0.12 2e+03 41 49 .. 921 929 .. 915 930 .. 0.85 6 ? -1.7 1.1 0.19 3.1e+03 7 15 .. 930 937 .. 924 943 .. 0.76 7 ! 14.7 1.3 1.5e-06 0.024 1 14 [. 945 957 .. 945 964 .. 0.90 8 ! 3.0 18.6 0.0066 1.1e+02 1 50 [] 966 1031 .. 966 1031 .. 0.88 9 ? -7.6 18.1 1 1.6e+04 3 31 .. 1002 1077 .. 1000 1080 .. 0.62 10 ? 2.4 10.0 0.01 1.7e+02 6 49 .. 1086 1128 .. 1083 1129 .. 0.91 11 ? -5.2 23.4 1 1.6e+04 13 42 .. 1135 1196 .. 1108 1215 .. 0.66 12 ? 2.1 1.1 0.013 2.1e+02 21 35 .. 1231 1245 .. 1218 1252 .. 0.84 13 ! 5.7 7.8 0.00097 16 16 43 .. 1302 1330 .. 1282 1337 .. 0.74 14 ! 17.6 6.0 1.9e-07 0.003 1 26 [. 1353 1377 .. 1353 1379 .. 0.96 15 ! 12.1 0.5 9.6e-06 0.16 2 15 .. 1387 1399 .. 1387 1406 .. 0.82 16 ! 14.8 0.7 1.4e-06 0.023 1 13 [. 1407 1419 .. 1407 1437 .. 0.87 17 ! 6.6 12.2 0.00048 7.9 1 46 [. 1439 1485 .. 1439 1487 .. 0.79 18 ! 2.7 0.7 0.0085 1.4e+02 29 50 .] 1489 1511 .. 1489 1511 .. 0.86 19 ! 16.5 16.9 4e-07 0.0066 2 39 .. 1517 1576 .. 1516 1583 .. 0.90 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.42 DUF4705 7 srrpLqapas 16 ++r+L+ p T322059_1 97 GQRRLH-PEN 105 577777.554 PP == domain 2 score: -2.2 bits; conditional E-value: 0.29 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322059_1 402 IMAHCSLKLPGSSNPTTSVFPVADRVSLCRP 432 5677788888888889999898888999888 PP == domain 3 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322059_1 832 APTSRQPLQAQNFLQSASTDQ 852 9********999999987655 PP == domain 4 score: -0.4 bits; conditional E-value: 0.078 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322059_1 882 TGTAPSLQWPL*tQ---LLPPSLLSRP 905 799*******9744...6776666665 PP == domain 5 score: -1.1 bits; conditional E-value: 0.12 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322059_1 921 GSLSRPSSS 929 689999997 PP == domain 6 score: -1.7 bits; conditional E-value: 0.19 DUF4705 7 srrpLqapa 15 srrpLq ++ T322059_1 930 SRRPLQ-AQ 937 89****.65 PP == domain 7 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322059_1 945 PGPAPASRRPLQ-A 957 9***********.5 PP == domain 8 score: 3.0 bits; conditional E-value: 0.0066 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322059_1 966 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 1031 9***********999**********97777666666778889************9999...88899998 PP == domain 9 score: -7.6 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322059_1 1002 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1077 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 10 score: 2.4 bits; conditional E-value: 0.01 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322059_1 1086 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1128 59*****.************9...679999998899*********97 PP == domain 11 score: -5.2 bits; conditional E-value: 1 DUF4705 13 a................................paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322059_1 1135 ArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1196 36666666666666666666666666666665567779********************5543 PP == domain 12 score: 2.1 bits; conditional E-value: 0.013 DUF4705 21 glsrpsaqLpvAsaG 35 ++ ++aqLp A+a T322059_1 1231 FFGLAPAQLPTAFAA 1245 599**********85 PP == domain 13 score: 5.7 bits; conditional E-value: 0.00097 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322059_1 1302 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1330 3356889***************9887776 PP == domain 14 score: 17.6 bits; conditional E-value: 1.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322059_1 1353 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1377 9***********.***********96 PP == domain 15 score: 12.1 bits; conditional E-value: 9.6e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322059_1 1387 GPAWASRQPLQA-Q 1399 9**********4.4 PP == domain 16 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322059_1 1407 PGPAPASRRPLQA 1419 9***********7 PP == domain 17 score: 6.6 bits; conditional E-value: 0.00048 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322059_1 1439 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1485 9***********999*****99888765.4566666544777778777 PP == domain 18 score: 2.7 bits; conditional E-value: 0.0085 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322059_1 1489 LLVASSGPELdLQSAFAGPASCL 1511 789*******8677888999998 PP == domain 19 score: 16.5 bits; conditional E-value: 4e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322059_1 1517 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1576 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 10402.46 // Query: T322059_2 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-27 94.7 222.6 2e-14 53.4 12.6 19.9 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.2 0.83 1.4e+04 23 30 .. 150 157 .. 130 159 .. 0.65 2 ? -1.1 0.2 0.13 2.1e+03 38 47 .. 833 842 .. 832 846 .. 0.76 3 ? 0.5 0.1 0.04 6.5e+02 7 34 .. 845 871 .. 840 873 .. 0.88 4 ! 31.1 5.2 1.1e-11 1.8e-07 3 49 .. 873 918 .. 871 919 .. 0.96 5 ! 7.1 3.1 0.00035 5.7 31 47 .. 921 937 .. 919 941 .. 0.90 6 ? 1.5 1.0 0.02 3.2e+02 34 49 .. 945 960 .. 942 961 .. 0.91 7 ? -13.4 23.0 1 1.6e+04 8 31 .. 983 1043 .. 961 1064 .. 0.57 8 ? 1.0 7.9 0.028 4.6e+02 6 46 .. 1049 1081 .. 1045 1084 .. 0.54 9 ! 33.5 11.7 2e-12 3.3e-08 2 50 .] 1070 1118 .. 1069 1118 .. 0.89 10 ! 8.8 4.7 0.0001 1.7 29 50 .] 1118 1139 .. 1116 1139 .. 0.93 11 ! 18.3 2.4 1.1e-07 0.0018 17 50 .] 1139 1172 .. 1139 1172 .. 0.95 12 ! 53.4 12.6 1.2e-18 2e-14 1 50 [] 1177 1224 .. 1177 1224 .. 0.99 13 ? 1.5 9.0 0.02 3.3e+02 2 27 .. 1288 1313 .. 1287 1338 .. 0.70 14 ! 6.1 18.1 0.0007 11 13 46 .. 1351 1398 .. 1314 1401 .. 0.67 15 ? -2.2 11.6 0.27 4.5e+03 9 27 .. 1404 1421 .. 1403 1456 .. 0.68 16 ? -2.2 2.6 0.29 4.7e+03 7 22 .. 1455 1469 .. 1453 1482 .. 0.59 17 ! 16.9 15.9 3.1e-07 0.0051 1 39 [. 1483 1565 .. 1483 1580 .. 0.96 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 0.83 DUF4705 23 srpsaqLp 30 rp++ Lp T322059_2 150 TRPPSLLP 157 46666666 PP == domain 2 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322059_2 833 LPPGSLSRPR 842 5788888884 PP == domain 3 score: 0.5 bits; conditional E-value: 0.04 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322059_2 845 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 871 678889.9************99999877 PP == domain 4 score: 31.1 bits; conditional E-value: 1.1e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322059_2 873 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 918 689*******.************************************ PP == domain 5 score: 7.1 bits; conditional E-value: 0.00035 DUF4705 31 vAsaGpklppagLsrPs 47 +As+Gp lpp+gL rP+ T322059_2 921 AASPGPALPPGGLCRPR 937 8***************6 PP == domain 6 score: 1.5 bits; conditional E-value: 0.02 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322059_2 945 QGQLLPPGALCRPKSS 960 79999********997 PP == domain 7 score: -13.4 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322059_2 983 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 1043 5777766666666666653333333333333333333223222111134555555555555 PP == domain 8 score: 1.0 bits; conditional E-value: 0.028 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 as r L a+ q+s +L +AsaGp + L+rP T322059_2 1049 ASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 1081 5555.5555555555.......5555555555554555555 PP == domain 9 score: 33.5 bits; conditional E-value: 2e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322059_2 1070 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1118 9******9555.7765499***************************9976 PP == domain 10 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322059_2 1118 LRASSPGPALPPGCVSRPDSCL 1139 7799*****************9 PP == domain 11 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322059_2 1139 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1172 68899999************************87 PP == domain 12 score: 53.4 bits; conditional E-value: 1.2e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322059_2 1177 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1224 9*********************************************..97 PP == domain 13 score: 1.5 bits; conditional E-value: 0.02 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322059_2 1288 GRGWASsSWPLQ-THLQPPGVLSGPSS 1313 78999637****.88888888888876 PP == domain 14 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322059_2 1351 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1398 25578889********************55555555555555555555 PP == domain 15 score: -2.2 bits; conditional E-value: 0.27 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322059_2 1404 RPLQ-AQLQPPGGLCRPKS 1421 9***.99999999888865 PP == domain 16 score: -2.2 bits; conditional E-value: 0.29 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322059_2 1455 SSQPLQ-AQLLLPQWP 1469 679***.666555433 PP == domain 17 score: 16.9 bits; conditional E-value: 3.1e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322059_2 1483 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1565 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 9396.73 // Query: T322059_3 [L=1708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-49 166.0 242.0 2.5e-18 65.9 10.8 20.2 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.9 1.1e-08 0.00019 27 48 .. 832 853 .. 820 853 .. 0.94 2 ! 4.5 3.1 0.0023 37 2 39 .. 861 898 .. 861 902 .. 0.86 3 ! 37.3 19.1 1.3e-13 2.1e-09 1 50 [] 913 971 .. 913 971 .. 0.96 4 ! 16.8 10.2 3.2e-07 0.0052 16 49 .. 958 991 .. 957 993 .. 0.91 5 ! 3.9 5.4 0.0035 58 1 19 [. 1010 1031 .. 996 1034 .. 0.68 6 ! 2.5 11.7 0.0094 1.5e+02 1 38 [. 1010 1044 .. 1010 1059 .. 0.73 7 ? -1.2 19.5 0.14 2.2e+03 1 39 [. 1035 1096 .. 1035 1097 .. 0.84 8 ! 3.8 12.9 0.0038 62 7 39 .. 1097 1139 .. 1096 1144 .. 0.87 9 ! 6.3 1.6 0.00064 10 1 18 [. 1133 1149 .. 1133 1165 .. 0.75 10 ! 16.3 2.3 4.5e-07 0.0074 1 26 [. 1166 1190 .. 1166 1192 .. 0.95 11 ! 17.4 5.8 2.1e-07 0.0034 1 30 [. 1199 1238 .. 1199 1240 .. 0.93 12 ! 14.4 10.8 1.9e-06 0.031 18 50 .] 1293 1325 .. 1278 1325 .. 0.87 13 ! 23.1 5.9 3.5e-09 5.7e-05 17 50 .] 1325 1358 .. 1324 1358 .. 0.96 14 ! 65.9 10.8 1.5e-22 2.5e-18 1 50 [] 1363 1412 .. 1363 1412 .. 0.99 15 ! 12.0 1.2 1.1e-05 0.17 25 44 .. 1408 1427 .. 1408 1428 .. 0.95 16 ! 16.2 7.3 4.9e-07 0.008 20 49 .. 1435 1464 .. 1433 1466 .. 0.90 17 ? 0.2 1.7 0.051 8.4e+02 19 46 .. 1475 1506 .. 1473 1508 .. 0.87 18 ? 0.9 3.3 0.029 4.8e+02 4 29 .. 1527 1551 .. 1525 1551 .. 0.88 19 ! 18.5 6.9 9.7e-08 0.0016 2 35 .. 1550 1582 .. 1549 1589 .. 0.92 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322059_3 832 SYLPAASPGPELSPVGLHRPSS 853 67******************98 PP == domain 2 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322059_3 861 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 898 67789999888.899********************9854 PP == domain 3 score: 37.3 bits; conditional E-value: 1.3e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322059_3 913 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 971 9*****************99997888999****************************98 PP == domain 4 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps+ L +As+G k p ++LsrPss+ T322059_3 958 SRPQVGLPRPSSSLSAASPGAKVPRVSLSRPSSS 991 56899**************************975 PP == domain 5 score: 3.9 bits; conditional E-value: 0.0035 DUF4705 1 PgpAPasrrpLqa...paslqa 19 PgpA ++rpLqa p +l++ T322059_3 1010 PGPAFDFWRPLQAstrPGLLPP 1031 6777777777776666555554 PP == domain 6 score: 2.5 bits; conditional E-value: 0.0094 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322059_3 1010 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 1044 9***********..666665.88888999999888876 PP == domain 7 score: -1.2 bits; conditional E-value: 0.14 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322059_3 1035 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1096 799999999999999999999999999999988877788888887764489********997 PP == domain 8 score: 3.8 bits; conditional E-value: 0.0038 DUF4705 7 srrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322059_3 1097 FRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1139 69*************8888776549**************9854 PP == domain 9 score: 6.3 bits; conditional E-value: 0.00064 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322059_3 1133 PGPTPASQQPLW-TQCLP 1149 9**********9.77766 PP == domain 10 score: 16.3 bits; conditional E-value: 4.5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322059_3 1166 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1190 9***********.9***********7 PP == domain 11 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLp 30 P+pA+asrrpLqa pas+q s l + s+++ T322059_3 1199 PRPAWASRRPLQAqvvlksaspgPASQQVSKLFWLSSCPA 1238 99**************************999999999985 PP == domain 12 score: 14.4 bits; conditional E-value: 1.9e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322059_3 1293 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1325 899***************************987 PP == domain 13 score: 23.1 bits; conditional E-value: 3.5e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322059_3 1325 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1358 899*****************************87 PP == domain 14 score: 65.9 bits; conditional E-value: 1.5e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322059_3 1363 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1412 9***********************************************98 PP == domain 15 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322059_3 1408 PSSSLPAASAGLSRPQVGLE 1427 99****************96 PP == domain 16 score: 16.2 bits; conditional E-value: 4.9e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322059_3 1435 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1464 67888**********************975 PP == domain 17 score: 0.2 bits; conditional E-value: 0.051 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322059_3 1475 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1506 67888999999999***99999999******9 PP == domain 18 score: 0.9 bits; conditional E-value: 0.029 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322059_3 1527 RPASSR-LTAPSPVQSSCLSATSAGP 1551 599999.*99999*******999976 PP == domain 19 score: 18.5 bits; conditional E-value: 9.7e-08 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322059_3 1550 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1582 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.49 # Mc/sec: 9972.04 // Query: T062847_1 [L=4098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.34s 00:00:01.52 Elapsed: 00:00:00.56 # Mc/sec: 20567.86 // Query: T062847_2 [L=4097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 498 (0.0305409); expected 326.1 (0.02) Passed bias filter: 297 (0.0182142); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.29s 00:00:01.61 Elapsed: 00:00:00.56 # Mc/sec: 20562.84 // Query: T062847_3 [L=4097] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4097 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.32s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 20930.04 // Query: T013927_1 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-27 94.4 0.2 4.7e-27 93.5 0.2 1.5 1 Transposase_1 Transposase (partial DDE domain) 1.5e-06 27.8 0.2 2.3e-06 27.2 0.2 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.5 0.2 5.8e-31 4.7e-27 9 80 .] 1576 1646 .. 1575 1646 .. 0.96 Alignments for each domain: == domain 1 score: 93.5 bits; conditional E-value: 5.8e-31 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 aqWld++ +pk++pkp+l qkkvm VwWsa+gli+y fl pgetitse+Yaqq +++++klq +++a+vnr T013927_1 1576 AQWLDQE-APKHFPKPNLDQKKVMFAVWWSAAGLIHYCFLTPGETITSEKYAQQFKEMNRKLQPLQSAMVNR 1646 79*9986.68************************************************************97 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.2 2.8e-10 2.3e-06 49 140 .. 378 472 .. 376 482 .. 0.86 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 2.8e-10 DDE_1 49 rkawltssifeeWLekvfdkrve.kaekrk....vlLllddsrshe.tvelsecelqniklvflPasstsll.qPldqgvvselKarYrrqllkallal 140 +++ + + +f W++++f+++ve k+k +lLl+d+ ++ + + + +++i++vf+Pa+ +s+l + d+gv+ ++K++Y r++l+++ + T013927_1 378 QQSLMKALLFILWFTEYFKPTVEtYCFKKKipf*ILLLIDNEAGNPrALTE---IYKKINVVFMPANKSSIL*H-TDKGVIFTFKSYYLRKTLHKATTA 472 56778889999************6555666556669********9977777...8************9999888.6*****************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 10641.17 // Query: T013927_2 [L=1897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 28.6 0.1 2.3e-06 27.4 0.1 1.6 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain 0.00063 19.2 0.1 0.0015 18.0 0.0 1.7 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.1 2.8e-10 2.3e-06 11 58 .. 208 260 .. 206 261 .. 0.96 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 2.8e-10 HHHHHC.CT---SCHHHHHHHHHHH.....HHSSSCT-TT-S--CHHHHHHHH CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela.....slaadpkepdfkaSkgWldrFkk 58 Wi++++ ++p++++li++k + l+ ++++++ +++fka gWl rFk+ T013927_2 208 WIENQTSPNIPLSQSLIQRKVLTLFnsvkaERGEETAGEKFKATRGWLMRFKE 260 ******************************99999****************95 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.8e-07 0.0015 1 46 [. 331 375 .. 331 375 .. 0.93 2 ? -3.1 0.1 0.56 4.5e+03 66 101 .. 1398 1435 .. 1394 1436 .. 0.79 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.8e-07 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyk 46 k+rlt+ l+anaag kLkp++i +++sp a kn + k +l+v yk T013927_2 331 KNRLTLSLGANAAGHLKLKPMLINQSESPWALKN-YAKPTLPVPYK 375 679*******************************.88888888885 PP == domain 2 score: -3.1 bits; conditional E-value: 0.56 DDE_1 66 fdkrve...kaekrkvlLllddsrshetvelsecelqni 101 f+k +e k++k +v+ l + +h++ve +++ +n+ T013927_2 1398 FEKMMEmmlKKKKIRVIFLFEVKMGHKAVET-TRKINNT 1435 6777777778999999999999999999998.6666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.50 # Mc/sec: 10853.99 // Query: T013927_3 [L=1896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 11069.66 // Query: T277876_1 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 743 (0.045566); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.48 # Mc/sec: 9875.82 // Query: T277876_2 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 738 (0.0452594); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 8459.88 // Query: T277876_3 [L=1656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 767 (0.0470379); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.55 # Mc/sec: 8613.70 // Query: T164581_1 [L=7592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.38s 00:00:02.00 Elapsed: 00:00:00.64 # Mc/sec: 33936.60 // Query: T164581_2 [L=7591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.33s 00:00:02.00 Elapsed: 00:00:00.63 # Mc/sec: 34470.73 // Query: T164581_3 [L=7591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.56 # Mc/sec: 38099.23 // Query: T080307_1 [L=2194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11412.11 // Query: T080307_2 [L=2193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 11618.15 // Query: T080307_3 [L=2193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.52 # Mc/sec: 12065.00 // Query: T138154_1 [L=1804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 9557.29 // Query: T138154_2 [L=1803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 9378.32 // Query: T138154_3 [L=1803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9732.22 // Query: T363125_1 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 858 (0.0526187); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 7051.42 // Query: T363125_2 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 839 (0.0514535); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 7466.21 // Query: T363125_3 [L=1331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1331 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 6346.27 // Query: T125961_1 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 5430.28 // Query: T125961_2 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 5331.55 // Query: T125961_3 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 4312.28 // Query: T276702_1 [L=1336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 6265.69 // Query: T276702_2 [L=1335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 5616.48 // Query: T276702_3 [L=1335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 6365.35 // Query: T370220_1 [L=2907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.30s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 12794.51 // Query: T370220_2 [L=2907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.29s 00:00:01.39 Elapsed: 00:00:00.80 # Mc/sec: 10395.54 // Query: T370220_3 [L=2907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.69 # Mc/sec: 12052.80 // Query: T295330_1 [L=1610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 7806.67 // Query: T295330_2 [L=1610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 6978.69 // Query: T295330_3 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 7424.32 // Query: T316828_1 [L=6191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.37s 00:00:02.51 Elapsed: 00:00:00.71 # Mc/sec: 24945.63 // Query: T316828_2 [L=6190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 537 (0.0329327); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.40s 00:00:02.39 Elapsed: 00:00:00.81 # Mc/sec: 21862.39 // Query: T316828_3 [L=6190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.38s 00:00:02.44 Elapsed: 00:00:00.93 # Mc/sec: 19041.44 // Query: T138033_1 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 10673.50 // Query: T138033_2 [L=2051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.25s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 8149.39 // Query: T138033_3 [L=2051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 9463.81 // Query: T018812_1 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 5610.41 // Query: T018812_2 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-30 104.1 16.4 6.9e-30 104.1 16.4 2.4 3 CCDC144C CCDC144C protein coiled-coil region 1.7e-16 60.4 6.5 1.7e-16 60.4 6.5 3.5 3 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 5.5 7.0 8.4 6.9 6.7 2.9 2.4 2 Phage_lysis Bacteriophage Rz lysis protein 7.5 6.6 9.0 32 4.5 1.2 3.2 3 GIT_CC GIT coiled-coil Rho guanine nucleotide exchange Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.0 2.0 2.8 1.1e+04 98 118 .. 212 232 .. 192 249 .. 0.38 2 ! 104.1 16.4 1.7e-33 6.9e-30 1 96 [. 254 349 .. 254 350 .. 0.99 3 ? 0.5 0.7 0.06 2.5e+02 74 108 .. 718 752 .. 703 767 .. 0.71 Alignments for each domain: == domain 1 score: -5.0 bits; conditional E-value: 2.8 CCDC144C 98 srLaaAiqdheqsqtskrdle 118 +L +iq +e + ++ r++ T018812_2 212 KQLEPTIQSLEMKPKTTRNTP 232 222233333333333333333 PP == domain 2 score: 104.1 bits; conditional E-value: 1.7e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018812_2 254 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 349 9*********************************************************************************************95 PP == domain 3 score: 0.5 bits; conditional E-value: 0.06 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018812_2 718 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 752 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.2 0.19 7.5e+02 2 27 .. 212 237 .. 207 244 .. 0.79 2 ? -4.5 6.5 4 1.6e+04 29 87 .. 275 332 .. 257 347 .. 0.58 3 ! 60.4 6.5 4.1e-20 1.7e-16 3 69 .. 711 776 .. 710 778 .. 0.93 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.19 DUF3496 2 sqmElrikdLeselskmKtsqedsnk 27 +q+E +i++Le++ +++++ ++ nk T018812_2 212 KQLEPTIQSLEMKPKTTRNTPNQINK 237 58888888888888888887777765 PP == domain 2 score: -4.5 bits; conditional E-value: 4 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 +Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018812_2 275 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 332 4555.345677777766666666666655566666665555555555555555554444 PP == domain 3 score: 60.4 bits; conditional E-value: 4.1e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018812_2 711 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 776 78*********************.***********************************97766665 PP >> Phage_lysis Bacteriophage Rz lysis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.3 0.027 1.1e+02 10 59 .. 205 262 .. 196 272 .. 0.76 2 ? 6.7 2.9 0.0017 6.9 6 58 .. 279 332 .. 269 343 .. 0.74 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.027 Phage_lysis 10 ekdnaelraakaeieelqtrqr.......avae.ldakhtkeLadaksendrlradva 59 k++ e+++ + +i+ l+++ + ++++ ld ++e++d en l++d+a T018812_2 205 YKKEVEAKQLEPTIQSLEMKPKttrntpnQINKsLDFHNQEEMKDLMDENCILKTDIA 262 4555566666677777777766666778877644**********************98 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0017 Phage_lysis 6 krqvekdnaelraakaeieelqtrqr.avaeldakhtkeLadaksendrlradv 58 +++ kd + +++ +a +e+ + + + ++++eL+d k+en rl+ ++ T018812_2 279 ENKYLKDVKIVKKTNAALEKYIKLNEeLITRTAFRYQQELNDLKAENTRLNSEL 332 4444555566666677777655544337888999****************9875 PP >> GIT_CC GIT coiled-coil Rho guanine nucleotide exchange factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 1.2 0.0079 32 31 62 .. 246 277 .. 238 281 .. 0.90 2 ? 4.0 0.3 0.011 46 28 64 .. 292 329 .. 282 331 .. 0.75 3 ? 1.1 0.0 0.092 3.8e+02 35 53 .. 747 765 .. 729 769 .. 0.74 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0079 GIT_CC 31 kiqqLlkvNtslsdelrlLQskvqkLqaeNaq 62 ++ L+ N+ l++ ++ L +++ +++++N + T018812_2 246 EMKDLMDENCILKTDIAILRQEIRTMKNDNLE 277 5889*************************975 PP == domain 2 score: 4.0 bits; conditional E-value: 0.011 GIT_CC 28 seakiqqLlkvNtslsd.elrlLQskvqkLqaeNaqlr 64 +a +++ +k N++l + + Q++++ L+aeN+ l T018812_2 292 TNAALEKYIKLNEELITrTAFRYQQELNDLKAENTRLN 329 56667777788887754044589************997 PP == domain 3 score: 1.1 bits; conditional E-value: 0.092 GIT_CC 35 LlkvNtslsdelrlLQskv 53 lk+N+s+s++l++ +k+ T018812_2 747 ALKANSSMSKKLTKSNKKI 765 5799999999998765555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1096 (0.0672145); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 4660.95 // Query: T018812_3 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-30 105.4 13.6 2.8e-30 105.4 13.6 4.4 4 CCDC144C CCDC144C protein coiled-coil region 0.0029 17.5 1.1 0.0029 17.5 1.1 3.4 4 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 6.5 0.44 3.6e+03 186 237 .. 87 138 .. 78 196 .. 0.60 2 ! 13.2 1.2 4.1e-06 0.033 96 143 .. 348 393 .. 335 394 .. 0.87 3 ! 105.4 13.6 3.5e-34 2.8e-30 184 304 .. 432 543 .. 421 544 .. 0.94 4 ? -5.2 21.1 1.7 1.4e+04 120 231 .. 590 705 .. 559 708 .. 0.78 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.44 CCDC144C 186 rdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 r q+ + l ++++e+e+ +++ +kq ++e +se + L + + T018812_3 87 RKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 138 5555555555555555555555555555555555555555555555554443 PP == domain 2 score: 13.2 bits; conditional E-value: 4.1e-06 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018812_3 348 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 393 689**********************9554.57..89*********9976 PP == domain 3 score: 105.4 bits; conditional E-value: 3.5e-34 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018812_3 432 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 522 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018812_3 523 MNECD-H*KESLFRYEREKAER 543 ****7.55589**********8 PP == domain 4 score: -5.2 bits; conditional E-value: 1.7 CCDC144C 120 afqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigk 215 + + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++ T018812_3 590 QVESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQE 689 3445557788899999999999999999999998444588999999999999998887777778899999999999999999776666666665526778 PP CCDC144C 216 qesleerlsqlqsenl 231 q ++ +l ql+++ + T018812_3 690 QAQYKKQLEQLNKDII 705 8899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.7 0.79 6.4e+03 15 57 .. 92 135 .. 85 172 .. 0.60 2 ! 17.5 1.1 3.5e-07 0.0029 24 94 .. 434 503 .. 430 504 .. 0.95 3 ? -2.6 0.0 0.55 4.5e+03 61 80 .. 547 566 .. 541 574 .. 0.73 4 ? -0.1 11.6 0.093 7.6e+02 9 97 .. 616 702 .. 610 707 .. 0.85 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.79 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS Laminin_II 15 vleqlaplsqnlentkeklseinrsveetnekvk.dankairdA 57 +l+ + l + le+++e ++ +++ +++e + ++++ i++ T018812_3 92 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNtNKSEKIQLS 135 55556666666666666666666654444443333444444443 PP == domain 2 score: 17.5 bits; conditional E-value: 3.5e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018812_3 434 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 503 68999********************************************************76.9999986 PP == domain 3 score: -2.6 bits; conditional E-value: 0.55 XXXXXXXXXXXXXXXXXXXX CS Laminin_II 61 vkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018812_3 547 VRQLQQEAADSLKKLTMLES 566 78888888888888777765 PP == domain 4 score: -0.1 bits; conditional E-value: 0.093 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseike 97 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ + T018812_3 616 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLNK 702 55555666678999*********************************************************999994..4777776654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2073 (0.127131); expected 326.1 (0.02) Passed bias filter: 269 (0.016497); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.71 # Mc/sec: 4267.07 // Query: T222937_1 [L=3918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-09 34.6 0.4 2e-08 33.5 0.4 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.4 1.2e-12 2e-08 1 19 [] 3592 3610 .. 3592 3610 .. 0.98 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 1.2e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS++sQ T222937_1 3592 SFVGTWMKLETIILSKVSQ 3610 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 499 (0.0306022); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.87 # Mc/sec: 12883.60 // Query: T222937_2 [L=3918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-32 110.5 0.6 1.2e-31 109.9 0.6 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.9 0.6 7.1e-36 1.2e-31 50 222 .] 2922 3120 .. 2909 3120 .. 0.93 Alignments for each domain: == domain 1 score: 109.9 bits; conditional E-value: 7.1e-36 ............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHH CS RVT_1 50 stldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm 147 s++++++ +++++++k k+++++++D +kaFd+++ ++ l++l++++v+ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn+++ T222937_2 2922 SCIKSINIIQHINRSKDKNHMIISIDAEKAFDKIQQHFMLKTLNKLGVDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVL 3019 677888999999999*********************************************************99************************ PP HHHHTT-T...............TEEECTTEEEEEESSHHHHH.HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETT CS RVT_1 148 nellrelrkra.........kgvtllrYaDDililskskeelq.elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLG 219 + l r +r++ ++ + +++aDD++++ +++ +ll+ ++++ k sg+kin +K++ +l+ s+ s+++kyLG T222937_2 3020 EVLARVIRQEKeikgiqlgkEEAKSSLFADDMIVYLEKPIVSA*SLLNQISNFSKVSGYKINVQKSQPFLYtnnrqtesqimSElpftiASNRIKYLG 3117 *********99***************************99988889***********************99999888877761156678********* PP EEE CS RVT_1 220 vtl 222 ++l T222937_2 3118 IQL 3120 986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.80 # Mc/sec: 14010.91 // Query: T222937_3 [L=3918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.35s 00:00:01.85 Elapsed: 00:00:00.82 # Mc/sec: 13669.19 // Query: T138177_1 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 6112.64 // Query: T138177_2 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 6549.26 // Query: T138177_3 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 7053.05 // Query: T353451_1 [L=2642] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2642 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1486 (0.0911321); expected 326.1 (0.02) Passed bias filter: 314 (0.0192567); expected 326.1 (0.02) Passed Vit filter: 147 (0.00901509); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.35s 00:00:02.50 Elapsed: 00:00:00.78 # Mc/sec: 9690.14 // Query: T353451_2 [L=2641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1230 (0.0754324); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.34s 00:00:01.93 Elapsed: 00:00:00.79 # Mc/sec: 9563.86 // Query: T353451_3 [L=2641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2641 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1282 (0.0786214); expected 326.1 (0.02) Passed bias filter: 293 (0.0179688); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.32s 00:00:02.02 Elapsed: 00:00:00.95 # Mc/sec: 7953.11 // Query: T325318_1 [L=273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 14.1 0.0 0.078 13.3 0.0 1.3 1 Phospho_p8 DNA-binding nuclear phosphoprotein p8 Domain annotation for each model (and alignments): >> Phospho_p8 DNA-binding nuclear phosphoprotein p8 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 4.8e-06 0.078 23 57 .. 213 247 .. 208 247 .. 0.91 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 4.8e-06 Phospho_p8 23 gKgRtKkEasehtnrpdPsGHeRKivtklqNtekk 57 +Kg t E++++t r P+ He ++++kl N+ +k T325318_1 213 SKGLTLLEQALRTYRLAPGRHECRVAQKLLNGRRK 247 6788889*************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1370.19 // Query: T325318_2 [L=273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.66 # Mc/sec: 1183.34 // Query: T325318_3 [L=272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.72 # Mc/sec: 1080.76 // Query: T342175_1 [L=2885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.70 # Mc/sec: 11790.71 // Query: T342175_2 [L=2885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-09 37.4 0.0 4.6e-09 36.4 0.0 1.4 1 rve Integrase core domain 7.2e-07 29.3 0.5 1.7e-06 28.1 0.5 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.4 0.0 5.6e-13 4.6e-09 9 104 .. 630 721 .. 625 722 .. 0.94 Alignments for each domain: == domain 1 score: 36.4 bits; conditional E-value: 5.6e-13 rve 9 qvDvtvgripdgggkayllvviddfsrlilaeavsdemda.stvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqd 104 vD+t+++ + gg+ y lv++ +fs+++ +++++e +a ++ ll+ ++ rfg+ p+++ sDng+++++ ++++ + l+i++++++++rpq T342175_2 630 FVDFTELS--QAGGYRYTLVFVCTFSGCVESFPTRTE-KA*EVSRILLKDIIPRFGP--PLTLGSDNGPAFVAAVVQQLTQTLKIKWKLHAAYRPQN 721 69***999..77889**********************.9999999999999999999..************************************95 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.5 2e-10 1.7e-06 1 39 [] 566 604 .. 566 604 .. 0.99 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 2e-10 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H+ tH+G + l+ l+ +++++++++++ + V+++C++C+ T342175_2 566 HQGTHMGKTALEILVGQYFYVPRLTAITRAVCEQCVTCA 604 99************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 11306.16 // Query: T342175_3 [L=2884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-14 53.1 0.2 5.4e-14 52.5 0.2 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.5 0.2 3.3e-18 5.4e-14 59 142 .. 409 496 .. 402 497 .. 0.85 Alignments for each domain: == domain 1 score: 52.5 bits; conditional E-value: 3.3e-18 .SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 59 ksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 ++ +vniytDS+Y++++++ h+++++++ t+e+k++kn k++++ll+++ +k+v + h+kgH++ ++gN+ aD+ Ak+aa T342175_3 409 AKGRSVNIYTDSRYAFATLHA--HGAIYKERGLlTTEGKEIKNkKKIQQLLEAIWTPKEVAVIHCKGHQTGgsdkATGNRKADKEAKKAA 496 36789************9998..6666666665599999****9999999999999************665578978**********997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.76 # Mc/sec: 10856.10 // Query: T275307_1 [L=1136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 4710.00 // Query: T275307_2 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 5237.16 // Query: T275307_3 [L=1135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.72 # Mc/sec: 4509.78 // Query: T003979_1 [L=1537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 6372.60 // Query: T003979_2 [L=1536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 6865.99 // Query: T003979_3 [L=1536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 6368.46 // Query: T172785_1 [L=6429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.38s 00:00:02.38 Elapsed: 00:00:00.82 # Mc/sec: 22429.60 // Query: T172785_2 [L=6429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.40s 00:00:02.44 Elapsed: 00:00:00.82 # Mc/sec: 22429.60 // Query: T172785_3 [L=6429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.36s 00:00:02.33 Elapsed: 00:00:00.76 # Mc/sec: 24200.36 // Query: T155901_1 [L=3878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.33s 00:00:01.68 Elapsed: 00:00:00.63 # Mc/sec: 17610.00 // Query: T155901_2 [L=3877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 14988.43 // Query: T155901_3 [L=3877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:00.82 # Mc/sec: 13526.14 // Query: T259472_1 [L=950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.71 # Mc/sec: 3827.87 // Query: T259472_2 [L=950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.69 # Mc/sec: 3938.82 // Query: T259472_3 [L=949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 5656.10 // Query: T030529_1 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-20 71.8 0.4 5.1e-20 71.0 0.4 1.3 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.0 0.4 3.1e-24 5.1e-20 18 68 .. 199 249 .. 189 258 .. 0.92 Alignments for each domain: == domain 1 score: 71.0 bits; conditional E-value: 3.1e-24 Transposase_1 18 pkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrq 68 k ++k +l kkvm+tVwWsa+gli+y+f +pg+ti+se+Y+qq+dk++ T030529_1 199 SKALSKDKLALKKVMVTVWWSAAGLIHYSFPNPGKTIKSEKYTQQIDKMHS 249 67889999999**************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.54 # Mc/sec: 2484.68 // Query: T030529_2 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.7 0.1 0.034 14.0 0.1 1.2 1 HTH_Tnp_IS630 Transposase 0.056 13.2 0.0 0.096 12.4 0.0 1.4 1 HTH_5 Bacterial regulatory protein, arsR family 0.085 12.3 0.1 0.14 11.6 0.1 1.3 1 HTH_24 Winged helix-turn-helix DNA-binding 0.15 11.8 0.2 0.36 10.5 0.2 1.6 1 IF2_N Translation initiation factor IF-2, N-terminal 0.18 11.6 0.1 0.31 10.9 0.1 1.3 1 HTH_11 HTH domain Domain annotation for each model (and alignments): >> HTH_Tnp_IS630 Transposase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.1 1.1e-05 0.034 31 95 .. 63 132 .. 47 153 .. 0.77 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.1e-05 HTH_Tnp_IS630 31 gratvyrWlk...reelaatkvetrkr..kidrkelkedvkknpdallkerakkfgvtpasllyalkklk 95 ++tv W++ re+ + + e+ + +d+++l+ vk p + +e+ak+++++ + ++ lk++ T030529_2 63 NKRTVQWWFQkfcREDESLEDKEHNGQplEVDNNQLRAIVKADPLTTKQEIAKELNINHSMIIQHLKQIG 132 578888887633255555544444444789************************************9983 PP >> HTH_5 Bacterial regulatory protein, arsR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 3e-05 0.096 19 39 .. 111 131 .. 98 134 .. 0.85 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 3e-05 HHHHHHHTS-HHHHHHHHHHH CS HTH_5 19 celaeelglsqstvShHLkkL 39 e+a+el+++ s + +HLk+ T030529_2 111 QEIAKELNINHSMIIQHLKQI 131 69*****************96 PP >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.1 4.3e-05 0.14 11 39 .. 101 129 .. 98 130 .. 0.88 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 4.3e-05 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p ++ +e+A++l++ s + ++lk T030529_2 101 IVKADPLTTKQEIAKELNINHSMIIQHLK 129 4566*******************999998 PP >> IF2_N Translation initiation factor IF-2, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.2 0.00011 0.36 7 31 .. 111 134 .. 109 136 .. 0.90 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00011 IF2_N 7 yeLAkelgvkskevikkLfkelGie 31 +e+Akel++ +i++L k+ G+ T030529_2 111 QEIAKELNINHSMIIQHL-KQIGKV 134 69****************.779986 PP >> HTH_11 HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.1 9.5e-05 0.31 10 39 .. 102 131 .. 95 135 .. 0.84 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 9.5e-05 HTH_11 10 leargpisgeeLAeeLnvSrrtvrrdIkaL 39 +a++ + +e+A+eLn+ + + +++k++ T030529_2 102 VKADPLTTKQEIAKELNINHSMIIQHLKQI 131 377777999******************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 240 (0.0147185); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2353.91 // Query: T030529_3 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.54 # Mc/sec: 2484.68 // Query: T190631_1 [L=1833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 828 (0.0507789); expected 326.1 (0.02) Passed bias filter: 416 (0.0255121); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.99 # Mc/sec: 5296.87 // Query: T190631_2 [L=1833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1228 (0.0753097); expected 326.1 (0.02) Passed bias filter: 606 (0.0371642); expected 326.1 (0.02) Passed Vit filter: 154 (0.00944438); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.35s 00:00:02.04 Elapsed: 00:00:00.93 # Mc/sec: 5638.60 // Query: T190631_3 [L=1833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.7 0.0 0.082 13.0 0.0 1.3 1 CTNNB1_binding N-terminal CTNNB1 binding 0.37 10.8 4.7 0.57 10.1 4.7 1.2 1 Peptidase_S49_N Peptidase family S49 N-terminal 0.39 10.8 6.5 0.76 9.9 6.5 1.4 1 DUF4798 Domain of unknown function (DUF4798) 4.4 5.5 12.2 5.7 5.1 12.2 1.0 1 Mpp10 Mpp10 protein Domain annotation for each model (and alignments): >> CTNNB1_binding N-terminal CTNNB1 binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 2e-05 0.082 41 124 .. 1317 1400 .. 1315 1449 .. 0.66 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 2e-05 CTNNB1_binding 41 LadvKSSLVnEsEssssssseeeaerrrkskkdqesyaekard..sleelrkqqdgglykksvysgypflmlpdaltspylsngsl 124 +a + SSL n sE+ ++ +++e++ ++ +++++e+ ++k+r+ ++e +rk + + ++++++++ ++ + + + l +gsl T190631_3 1317 IAPLHSSLGNKSETPPKKEERERGRKK--ERRKRERKKKKERKekKKERKRKGKFTRAFESEKNPQGLVVAVLAQALQVILIQGSL 1400 57799********98887777774333..333333333333330022333343444666666655554444444455555555555 PP >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 4.7 0.00014 0.57 60 114 .. 1338 1407 .. 1318 1415 .. 0.68 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00014 Peptidase_S49_N 60 alldeeelkalekeekkeekeekkaekkkake...............eeekkrlfvldFkGdikAseves 114 + +++e++++e+++kke+ke+kk++k+k k + + l v+ +G+++A eve T190631_3 1338 ERGRKKERRKRERKKKKERKEKKKERKRKGKFtrafeseknpqglvvAVLAQALQVILIQGSLRALEVEY 1407 3444555555555555555555555544444378888888888888877788888999999999988875 PP >> DUF4798 Domain of unknown function (DUF4798) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 6.5 0.00019 0.76 5 83 .. 1327 1404 .. 1324 1412 .. 0.76 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00019 DUF4798 5 ksatksneeektralpkaRksrkrparkelsekekyyrHrrRYyqlmEKrlkaLgravskllkqlAtrldvqielldLe 83 ks+t+ ++ee++r k+R++r+r+ +ke ek+k+ + + ++ + E g +v ++l q + + +q l +Le T190631_3 1327 KSETPPKKEERERGRKKERRKRERKKKKERKEKKKERKRKGKFTRAFESEKNPQGLVV-AVLAQALQVILIQGSLRALE 1404 78999999************************************98876555555444.34444445555666666666 PP >> Mpp10 Mpp10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 12.2 0.0014 5.7 504 576 .. 1325 1397 .. 1315 1410 .. 0.78 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0014 Mpp10 504 kkkgdvkskeErtktdkkreRrkkKrkkrkklkekeeeqklkeklkpekkekkeekakklkkltkaknvtvik 576 ++k+++ k+E + +k+eRrk rkk+k++kek++e+k k k + +++k+ + ++ l++a +v +i+ T190631_3 1325 GNKSETPPKKEERERGRKKERRKRERKKKKERKEKKKERKRKGKFTRAFESEKNPQGLVVAVLAQALQVILIQ 1397 5666667778888888999999999999999999999899998888888888888888887777777776665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1044 (0.0640255); expected 326.1 (0.02) Passed bias filter: 508 (0.0311542); expected 326.1 (0.02) Passed Vit filter: 112 (0.00686864); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:00.84 # Mc/sec: 6242.74 // Query: T212590_1 [L=3987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.38s 00:00:01.83 Elapsed: 00:00:00.98 # Mc/sec: 11638.91 // Query: T212590_2 [L=3987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:00.64 # Mc/sec: 17822.08 // Query: T212590_3 [L=3986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.57 # Mc/sec: 19660.81 // Query: T001134_1 [L=1049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.62 10.3 2.8 1.2 9.3 2.8 1.5 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 2.8 7.6e-05 1.2 16 52 .. 852 888 .. 852 895 .. 0.71 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 7.6e-05 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkask 52 +Y+++Y++I++++ + f + +r Lk s T001134_1 852 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCSG 888 79*********99888887776666555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5884.33 // Query: T001134_2 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5996.30 // Query: T001134_3 [L=1048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 6118.67 // Query: T112509_1 [L=2224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 12235.55 // Query: T112509_2 [L=2224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-08 34.2 0.0 3.6e-08 33.5 0.0 1.3 1 rve Integrase core domain 4.6e-08 32.7 0.0 8.1e-08 31.9 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.0 4.4e-12 3.6e-08 17 117 .. 580 673 .. 574 675 .. 0.82 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 4.4e-12 rve 17 ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 +p+++g+ ++l+ id++ r++ +++ t+++++e+ + p + sD+g+ +t+k++ +++ +gi++s++ p++p+ G++E n++ k T112509_2 580 LPSWKGQRFVLTEIDTYCRYACN-----ASAKTTICGVMECLIHCHSI--PYSIASDQGTPFTAKEVWQWAHAHGIHLSYHVPHHPEAAGLIEEWNGLSK 672 45666667777777777665543.....33456699999988888888..9*********************************************9987 PP rve 117 d 117 T112509_2 673 S 673 6 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.0 9.9e-12 8.1e-08 8 110 .. 744 846 .. 738 865 .. 0.89 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 9.9e-12 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECG CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilta 107 + + s+g+++ + ++++ get+++p++ ++ p g+ + +lp+S a+kg++v++g+id y+ +++ l n +k++ ++gd + +L+ ++ + T112509_2 744 PMTLHSVGLEVLIPVGIMLPSGETTTIPLNWKLRFPPGHFGPLLPSSPQAKKGVTVLTGLIDLNYQDAISLLLHNGGKEEYVWNTGDPLGHLLTLPCPVI 843 566678999999999******************************************************************************9999776 PP EEE CS dUTPase 108 ele 110 +++ T112509_2 844 KVN 846 655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 12475.46 // Query: T112509_3 [L=2223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 12230.05 // Query: T227321_1 [L=2827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.52 # Mc/sec: 15553.01 // Query: T227321_2 [L=2827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 14704.67 // Query: T227321_3 [L=2826] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2826 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 14436.97 // Query: T032042_1 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 9253.68 // Query: T032042_2 [L=1682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 8592.71 // Query: T032042_3 [L=1681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 8587.60 // Query: T076864_1 [L=2566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 12878.75 // Query: T076864_2 [L=2566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 12656.71 // Query: T076864_3 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.57 # Mc/sec: 12651.77 // Query: T000159_1 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.59 # Mc/sec: 13964.73 // Query: T000159_2 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14454.72 // Query: T000159_3 [L=2880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 13289.02 // Query: T349020_1 [L=3648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.61 # Mc/sec: 17108.70 // Query: T349020_2 [L=3648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-05 24.2 0.2 3.8e-05 23.1 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.2 2.3e-09 3.8e-05 1 19 [] 1277 1295 .. 1277 1295 .. 0.98 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 2.3e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T349020_2 1277 SFAGRWMKLEIIILSKLSQ 1295 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.61 # Mc/sec: 17108.70 // Query: T349020_3 [L=3648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-33 115.5 1.7 1.1e-32 113.2 1.7 2.0 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 0.036 13.6 1.9 0.09 12.3 1.9 1.7 1 DUF1725 Protein of unknown function (DUF1725) 0.97 9.5 5.9 0.87 9.7 0.2 2.7 3 GRIN_C G protein-regulated inducer of neurite outgrowth C- Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.2 1.7 2e-36 1.1e-32 2 222 .] 459 705 .. 451 705 .. 0.89 Alignments for each domain: == domain 1 score: 113.2 bits; conditional E-value: 2e-36 E-TT.S-EEE......-THHHHCTB--.............-------HHHH....................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliak....rLkdvlekllsenqpgfrpgrstldav.......eellkalkkkkkaklllklDlkkaFdsvpleellr 90 K ++++Rpisl++++ k+lnk++a+ +Lk + ++ ++ g + g + + + + k+ +++D +kaFd++++++ l+ T349020_3 459 TK--KENFRPISLMNINAKILNKILAN*iqqQLKSLSTMIKLASSLGCKAGSTYANQSt*sim*tKPMIKT----------TSIDAEKAFDKIQHHFMLE 546 34..479*****************75443339****9**************66655557777775555555..........9****************** PP GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T................TEEECTTEEEEEESS.HHH CS RVT_1 91 kltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra..........kgvtllrYaDDililsks.kee 179 +l++++++ + +++i+s++ + ++++ +ng++ e ++ ++g++qG++lSPllfn++++ l r +r++ + ++l+++aDD++++ ++ + T349020_3 547 TLNKLGIDGTYLKIIRSIYDKSTANIILNGQNLEAFPLTTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqigreEVNKLSLFADDMIVYLENpIVS 646 *******************************99*********************************99*********99999**************6677 PP HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 180 lqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 +++ l+ ++++ k sg+kin ++++l+ + ++++kyLG++l T349020_3 647 AKNFLKLISNFNKVSGYKINVPNSQAFLYtsnrqtesqvmsELpfttATKRIKYLGIQL 705 ***************************99*99999887776115567*********986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 1.9 1.6e-05 0.09 5 19 .] 2068 2082 .. 2068 2082 .. 0.98 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.6e-05 DUF1725 5 KWMELEnIILSEisQ 19 +W ELE+I LSEisQ T349020_3 2068 TWIELEYITLSEISQ 2082 9*************9 PP >> GRIN_C G protein-regulated inducer of neurite outgrowth C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.6 0.4 3 1.6e+04 103 111 .. 1151 1159 .. 1142 1166 .. 0.42 2 ? 2.3 0.0 0.032 1.7e+02 24 59 .. 3136 3171 .. 3119 3172 .. 0.82 3 ? 9.7 0.2 0.00016 0.87 104 129 .. 3382 3407 .. 3372 3409 .. 0.75 Alignments for each domain: == domain 1 score: -4.6 bits; conditional E-value: 3 GRIN_C 103 skkkrkrrq 111 +kkk+k+++ T349020_3 1151 QKKKKKKKK 1159 222222111 PP == domain 2 score: 2.3 bits; conditional E-value: 0.032 GRIN_C 24 vkkedkkkekaeekkkepvrevvWDekGmtWEvYGA 59 + k++k+++k+++k++++ +e+ W + t Ev A T349020_3 3136 ISKTNKQASKQTNKQTKNPQEIYWVTQLKTPEVHAA 3171 456678899999************999999999866 PP == domain 3 score: 9.7 bits; conditional E-value: 0.00016 GRIN_C 104 kkkrkrrqpnvFrsllqnvrrpnCCs 129 k+k++q++ Fr+llq+ rr CC+ T349020_3 3382 VSKNKQQQKKNFRLLLQEGRRDGCCA 3407 35566666666**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.60 # Mc/sec: 17393.85 // Query: T099746_1 [L=2470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 12847.73 // Query: T099746_2 [L=2470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 9548.99 // Query: T099746_3 [L=2470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.4 8.1 139.7 1.9 8.4 15.8 6.1 5 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 20.8 0.0005 8.2 63 123 .. 1125 1185 .. 1119 1186 .. 0.67 2 ? -26.6 67.5 1 1.6e+04 85 120 .. 1183 1220 .. 1155 1281 .. 0.48 3 ? 5.6 30.0 0.00082 13 59 116 .. 1249 1306 .. 1245 1323 .. 0.63 4 ? 8.4 15.8 0.00012 1.9 66 124 .. 1324 1382 .. 1314 1387 .. 0.72 5 ? 6.1 12.2 0.00061 9.9 59 119 .. 1391 1451 .. 1385 1456 .. 0.80 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0005 Trypan_PARP 63 epeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGaa 123 p + + p++ +++ +ep + e+ + p+pep++ep pep p+pep G+a T099746_3 1125 APSHLSRPVPDPVPKPVPEPLSGSASESLSGSAPSPDPEPDPEPIPEPLSGPDPEPLCGSA 1185 3444455666666666666666677777777777788888888888888888888888876 PP == domain 2 score: -26.6 bits; conditional E-value: 1 Trypan_PARP 85 egeeetepeeeeepepepetepepep..epepepepep 120 + +++ pe+ +ep p +ep pep p pep pep T099746_3 1183 GSAPDPVPEPVPEPLSGPVPEPVPEPlsGPVPEPVPEP 1220 23333333332222222222222222001122222222 PP == domain 3 score: 5.6 bits; conditional E-value: 0.00082 Trypan_PARP 59 drddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepep 116 +++ pe+ + pe+ +e+ ++p++e+ + pe+ + p pep + p+pep pep T099746_3 1249 VPEPVPEPLSGPVPEPVPEPPSGPDPEPLSGSAPEPVPGPVPEPLSGPDPEPVPEPLS 1306 4667777777777777777777777777777777776666666666666666555532 PP == domain 4 score: 8.4 bits; conditional E-value: 0.00012 Trypan_PARP 66 eeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGaat 124 + +e+ p + +e+ ep + +e+ pe+ p pep + p pe p p p p G+at T099746_3 1324 PVPEPLPGPISEPLLEPVSGPVPESAPEPISGPVPEPVPGPHPELVPVPAPGPLSGSAT 1382 34555555666666677777777888888777788888888888888888888888887 PP == domain 5 score: 6.1 bits; conditional E-value: 0.00061 Trypan_PARP 59 drddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepepe 119 ++ ++p+ e ++p ++ + ++pe+ + + ++p p e pep p p pep T099746_3 1391 EPVPGPNSETVSGPVPDCVPGSHPEPVPVPAPGPLSGSATGPVLERVPEPVPGPIPEPVSG 1451 5667888888889999999999999999999999998878888888888888777776544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.72 # Mc/sec: 9814.24 // Query: T222917_1 [L=4599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.35s 00:00:01.95 Elapsed: 00:00:00.78 # Mc/sec: 16867.89 // Query: T222917_2 [L=4598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.31s 00:00:01.88 Elapsed: 00:00:00.71 # Mc/sec: 18526.90 // Query: T222917_3 [L=4598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.80 # Mc/sec: 16442.62 // Query: T051595_1 [L=2173] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2173 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.76 # Mc/sec: 8179.72 // Query: T051595_2 [L=2173] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2173 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 8880.83 // Query: T051595_3 [L=2172] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2172 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 10186.43 // Query: T138437_1 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 6223.41 // Query: T138437_2 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.71 # Mc/sec: 5697.48 // Query: T138437_3 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.80 # Mc/sec: 5052.94 // Query: T155321_1 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 6154.76 // Query: T155321_2 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.64 # Mc/sec: 6924.10 // Query: T155321_3 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-47 159.5 0.9 1.3e-46 158.8 0.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.8 0.9 7.7e-51 1.3e-46 1 209 [. 1133 1364 .. 1133 1390 .. 0.93 Alignments for each domain: == domain 1 score: 158.8 bits; conditional E-value: 7.7e-51 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis++++d k+lnk++a+++++++ekl+++nq+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T155321_3 1133 IPKPGrdttkKENFRPISMMNIDAKILNKVLANQIQQHIEKLIHHNQVGFIPGMQGWFNIcksiNIIHHINRTNDKNHMIISIDAEKAFDKIQQPFML 1230 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskske 178 ++l++++++ + +++i+++ ++++++ +ng++ e ++ k+ ++qG++lSPllfn++++ l r +r++ ++v l+++a D++++ +++ T155321_3 1231 KTLNKLGIDGTYLKIIRAISDKPTANIILNGQKLEAFPLKTSTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVILSLFANDVIVYLENPI 1328 ********************************99*********************************99***************************55 PP H.HHHHHHHHHHHHHHTT--BEGGG-EEE....... CS RVT_1 179 e.lqelleaveewlkesglkinpeKtklvlf....s 209 +q+ll+ ++++ k sg+kin +K++++l+ + T155321_3 1329 IsAQNLLKLISNFSKVSGYKINLQKSQAFLYtnnrE 1364 55***************************8754440 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 6330.61 // Query: T235588_1 [L=3026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.32s 00:00:01.62 Elapsed: 00:00:00.74 # Mc/sec: 11698.48 // Query: T235588_2 [L=3026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.26s 00:00:01.59 Elapsed: 00:00:00.90 # Mc/sec: 9618.75 // Query: T235588_3 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.78 # Mc/sec: 11094.89 // Query: T129740_1 [L=5652] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5652 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.37s 00:00:02.25 Elapsed: 00:00:00.82 # Mc/sec: 19718.79 // Query: T129740_2 [L=5651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.35s 00:00:02.04 Elapsed: 00:00:00.90 # Mc/sec: 17962.83 // Query: T129740_3 [L=5651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.39s 00:00:02.09 Elapsed: 00:00:00.77 # Mc/sec: 20995.52 // Query: T316533_1 [L=6906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.5 13.6 2.1e-05 24.7 13.6 1.3 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 3.1 5.9 10.6 4.5 5.3 10.6 1.1 1 CDC45 CDC45-like protein 4.1 7.9 42.0 8.6 6.9 42.0 1.5 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil 10 6.0 10.7 20 5.1 10.7 1.5 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 13.6 5.1e-09 2.1e-05 8 71 .. 2152 2211 .. 2148 2342 .. 0.67 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 5.1e-09 DUF1777 8 rdrrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrrrssrrsr 71 r+r+rdr+r+ + +++r+rdr+ +r +r+rer+++r+r+r+ er+r+r+r+r+r+++r+++ T316533_1 2152 RERERDRERETETERQRQRDRETER---QRQRERDTERERQRET-ERHRERERERERERERSQH 2211 2233333222222222233333333...3334444444443333.5555555555445444444 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.6 0.0011 4.5 137 191 .. 2154 2208 .. 2136 2264 .. 0.51 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0011 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrr 191 +e + ++++e+e ++++d+e+e ++++e++ +r++++++e+++e+e+er+r+r+r T316533_1 2154 RERDRERETETERQRQRDRETERQRQRERDTERERQRETERHRERERERERERER 2208 1111111111111111111111111111111111111111111222222222222 PP >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 42.0 0.0021 8.6 35 97 .. 2151 2209 .. 2146 2211 .. 0.56 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0021 PRP38_assoc 35 rsrrsrsrrrsrtrdrsrsrersrererrsrstprdrdrardRdrrrsk.rsreRdrsrsrdrd 97 ++r+r+r+r++ ++r+r r+r++er r r+rd +r+R+r+ ++ r+reR+r+r+r+r+ T316533_1 2151 ERERERDRERETETERQRQRDRETERQRQ-----RERDTERERQRETERhRERERERERERERS 2209 34555556666656666655555555555.....555555555555553366666666666665 PP >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 10.7 0.005 20 51 113 .. 2145 2207 .. 2143 2211 .. 0.80 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.005 Trypan_PARP 51 gaddtngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepe 113 a + n +r+ + e e ete + + + ete + + e +te e + e e + e e e e e e T316533_1 2145 NALEINERERERDRERETETERQRQRDRETERQRQRERDTERERQRETERHRERERERERERE 2207 566778889999999999999999999999999999999999998888888887777777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1593 (0.0976941); expected 326.1 (0.02) Passed bias filter: 334 (0.0204833); expected 326.1 (0.02) Passed Vit filter: 103 (0.00631669); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 4.32u 0.46s 00:00:04.78 Elapsed: 00:00:01.12 # Mc/sec: 17483.98 // Query: T316533_2 [L=6905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-05 23.4 19.1 0.00016 21.9 19.1 1.8 1 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 19.1 9.6e-09 0.00016 4 64 .. 2152 2209 .. 2150 2280 .. 0.58 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 9.6e-09 DUF1777 4 srdrr.drrrdrrrdrrdrdrrdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrrr 64 +r+r+ +r+r+r+rdr+++++r+rdrdr+r + +rer+r+r+r+++r er+r+r+r+r+ T316533_2 2152 EREREtERERQRQRDRDRETERQRDRDRER---ETQRERDRERQRDTER-EREREREREREA 2209 344432222223233222222333333333...2334444444443333.333333333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 679 (0.0416411); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.31u 0.45s 00:00:03.76 Elapsed: 00:00:01.17 # Mc/sec: 16883.79 // Query: T316533_3 [L=6905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1392 (0.0853673); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 98 (0.00601006); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.61u 0.43s 00:00:04.04 Elapsed: 00:00:00.90 # Mc/sec: 21948.92 // Query: T242264_1 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 11586.36 // Query: T242264_2 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 9403.42 // Query: T242264_3 [L=2267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.64 # Mc/sec: 10133.60 // Query: T272769_1 [L=650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.63 # Mc/sec: 2951.65 // Query: T272769_2 [L=650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 2999.26 // Query: T272769_3 [L=650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.3 1.2 0.0052 16.3 0.1 2.5 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.1 0.083 1.4e+03 11 21 .] 240 250 .. 239 250 .. 0.87 2 ! 16.3 0.1 3.2e-07 0.0052 4 20 .. 339 355 .. 339 356 .. 0.91 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.083 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272769_3 240 WRGFVLTRSFR 250 9***9988886 PP == domain 2 score: 16.3 bits; conditional E-value: 3.2e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272769_3 339 VTVMQAHVRGWLERKRL 355 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 504 (0.0309089); expected 326.1 (0.02) Passed bias filter: 382 (0.023427); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 3151.76 // Query: T351467_1 [L=3272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-151 503.0 20.2 4.9e-151 502.6 20.2 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.098 12.8 3.5 0.24 11.5 3.5 1.6 1 KLRAQ Predicted coiled-coil domain-containing prote 0.19 11.9 5.7 0.32 11.1 5.7 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 4.4 6.9 8.5 11 5.6 8.5 1.6 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 502.6 20.2 1.2e-154 4.9e-151 1 368 [] 2264 2599 .. 2264 2599 .. 0.98 Alignments for each domain: == domain 1 score: 502.6 bits; conditional E-value: 1.2e-154 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e++++++y+el e+ ++k+ke+e ++k++ee ntek+lk T351467_1 2264 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRRSNYSELWEDSQTKGKEVEnFEKNLEEcitritNTEKCLK 2351 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkileq 178 el+elk+k++el++e++ sl+sr d+leervsa+ede++e+ + e+k+rekr+k++eq T351467_1 2352 ------------------ELMELKAKARELHEECR------------------SLRSRHDQLEERVSAMEDEVNEM-K*EGKFREKRIKRNEQ 2407 ..................9****************..................**********************9.5559************ PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnlrliGv+es+ e+ +klen+l++i +enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rek T351467_1 2408 SLQEIWDYVKRPNLRLIGVPESDGENETKLENTLQDINQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREK 2500 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 GrvtlkGkPirl ad+saetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T351467_1 2501 GRVTLKGKPIRLPADFSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 2593 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 l++++ T351467_1 2594 LLQNHA 2599 ****96 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 3.5 5.8e-05 0.24 30 79 .. 2348 2404 .. 2334 2416 .. 0.73 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 5.8e-05 KLRAQ 30 elkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsk 79 + +el e +++ r ++E sL r +qLe rv+++ +e++e + K++ + T351467_1 2348 KCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNEMK*egkfreKRIKR 2404 4445566666778999**************************988875333222222 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 5.7 7.8e-05 0.32 6 99 .. 2297 2390 .. 2293 2392 .. 0.96 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 7.8e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ ++ ++ ++ ++ lee+ ++ + k +++++ k++a el +e ++l + ++le++++++e+e+++ T351467_1 2297 WMENDFDELREEGFRRSNYSELWEDSQTKGKEVENFEKNLEECITRITNTEKCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNE 2390 7889***************************************************************************************987 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 8.5 0.0027 11 121 185 .. 2317 2386 .. 2276 2419 .. 0.52 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0027 IncA 121 lq.eelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqr 185 ++ e+ +++++++e++e++++e +i++++ el +lk + +el +e+++l++++++l+++++ ++ T351467_1 2317 ELwEDSQTKGKEVENFEKNLEECITRITNTEkclkELMELKAKARELHEECRSLRSRHDQLEERVSAMED 2386 3334444444444444444444444444444444444444444444444444444444444443333322 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 758 (0.046486); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.89 # Mc/sec: 10517.57 // Query: T351467_2 [L=3271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.68 # Mc/sec: 13761.43 // Query: T351467_3 [L=3271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-22 80.2 1.3 2.2e-22 79.5 1.3 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 3.2e-10 40.1 0.0 5.4e-10 39.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.3e-07 31.3 1.1 2.9e-07 30.2 1.1 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 1.3 4.1e-26 2.2e-22 1 121 [. 3139 3268 .. 3139 3271 .] 0.96 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 4.1e-26 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK g ++++Rp+sl+++d k+lnkl+a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T351467_3 3139 IPKSGrdttkKENFRPVSLMNIDAKILNKLLANRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 3236 788888888889***************************************************99999999999999********************* PP GGGG-EEET....................... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvnge 121 ++l++++++ + ++i +++ ++++++ +ng+ T351467_3 3237 KTLNKLGIDGTYFKIITAIYDKPTANIILNGQ 3268 ***************************99997 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.0 9.9e-14 5.4e-10 1 113 [] 2633 2852 .. 2633 2852 .. 0.85 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 9.9e-14 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T351467_3 2633 LTLNVNG----LNAPIKKHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKpskikrdkeghyimv 2722 699****....7888999*******************99988877766668866677888899999*****99999777788999999**9999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T351467_3 2723 kgsiqqegliilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrsmrqkvnkdtqvlnsalhqadlidiyrtlhpksteytff 2816 9999999*9999999999999999999999999999999999******9999999999999999999999999999999999999998888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T351467_3 2817 saphntysKIDHILGSKALLSKCKRTEIITNYlSDH 2852 8888888888*****985544444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 1.1 5.4e-11 2.9e-07 2 118 .. 2732 2855 .. 2731 2856 .. 0.81 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 5.4e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + + +++ ++ + L + l++ +l + ++k++ tf s + T351467_3 2732 IILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSMRQKvNKDTQVLNSALHQADLIDIyrtLHPKSTeYTFFSAPHn 2821 58899**9999.777777777788788876.89*************998877789999***********98666664444444777554444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH+ i T351467_3 2822 tYSKIDHILGSKALLSKckRTEIITNYLSDHSTI 2855 58***************98666779******987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 973 (0.0596713); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.48u 0.35s 00:00:01.83 Elapsed: 00:00:00.74 # Mc/sec: 12645.64 // Query: T277502_1 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 11198.11 // Query: T277502_2 [L=2465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.73 # Mc/sec: 9660.20 // Query: T277502_3 [L=2465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 9660.20 // Query: T195977_1 [L=3411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.35s 00:00:01.72 Elapsed: 00:00:00.65 # Mc/sec: 15012.76 // Query: T195977_2 [L=3410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.35s 00:00:01.91 Elapsed: 00:00:00.94 # Mc/sec: 10378.12 // Query: T195977_3 [L=3410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:00.72 # Mc/sec: 13549.21 // Query: T109483_1 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1329 (0.0815037); expected 326.1 (0.02) Passed bias filter: 541 (0.033178); expected 326.1 (0.02) Passed Vit filter: 231 (0.0141666); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.76u 0.43s 00:00:03.19 Elapsed: 00:00:00.89 # Mc/sec: 9141.80 // Query: T109483_2 [L=2844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1312 (0.0804612); expected 326.1 (0.02) Passed bias filter: 559 (0.0342819); expected 326.1 (0.02) Passed Vit filter: 257 (0.0157611); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.82u 0.37s 00:00:03.19 Elapsed: 00:00:01.00 # Mc/sec: 8136.20 // Query: T109483_3 [L=2843] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2843 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1345 (0.082485); expected 326.1 (0.02) Passed bias filter: 564 (0.0345885); expected 326.1 (0.02) Passed Vit filter: 250 (0.0153318); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.96u 0.51s 00:00:03.47 Elapsed: 00:00:01.01 # Mc/sec: 8052.81 // Query: T156445_1 [L=1595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 6613.08 // Query: T156445_2 [L=1595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 7867.28 // Query: T156445_3 [L=1595] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1595 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.74 # Mc/sec: 6166.25 // Query: T369035_1 [L=1137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 4783.48 // Query: T369035_2 [L=1137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.66 # Mc/sec: 4928.43 // Query: T369035_3 [L=1136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5701.58 // Query: T196648_1 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.74 # Mc/sec: 3405.93 // Query: T196648_2 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.67 # Mc/sec: 3761.78 // Query: T196648_3 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.71 # Mc/sec: 3545.82 // Query: T060450_1 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.76 # Mc/sec: 9881.16 // Query: T060450_2 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0005 19.9 0.2 0.38 10.7 0.1 2.7 2 zf-BED BED zinc finger Domain annotation for each model (and alignments): >> zf-BED BED zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.1 2.4e-05 0.38 14 44 .] 1207 1236 .. 1197 1236 .. 0.89 2 ! 6.4 0.0 0.00051 8.2 13 44 .] 1366 1396 .. 1358 1396 .. 0.87 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 2.4e-05 SS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++ vC+ Cg l+ + +krH+r kHp T060450_2 1207 RHGMVCMVCGSSLAT-LKLSTIKRHIRQKHP 1236 67889**********.5*************8 PP == domain 2 score: 6.4 bits; conditional E-value: 0.00051 GSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 13 kkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 + +vC+ Cg l+ ++ +krH+ Hp T060450_2 1366 SRRGLVCMVCGGALAT-LKVSTIKRHILQVHP 1396 56678***********.5**********9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:01.01 # Mc/sec: 7435.33 // Query: T060450_3 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 10283.31 // Query: T297833_1 [L=4679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.82 # Mc/sec: 16324.18 // Query: T297833_2 [L=4679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.33s 00:00:01.95 Elapsed: 00:00:00.76 # Mc/sec: 17612.93 // Query: T297833_3 [L=4679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00024 20.6 0.0 0.0004 19.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0071 15.8 0.0 0.013 14.9 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 4.9e-08 0.0004 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 4.9e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297833_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 1.6e-06 0.013 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 1.6e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297833_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:00.73 # Mc/sec: 18336.74 // Query: T376358_1 [L=4781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.60 # Mc/sec: 22796.05 // Query: T376358_2 [L=4780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.60 # Mc/sec: 22791.28 // Query: T376358_3 [L=4780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.59 # Mc/sec: 23177.57 // Query: T214837_1 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 1460.22 // Query: T214837_2 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.47 # Mc/sec: 1491.28 // Query: T214837_3 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.46 # Mc/sec: 1517.48 // Query: T201384_1 [L=4483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.53 # Mc/sec: 24198.30 // Query: T201384_2 [L=4482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.53 # Mc/sec: 24192.91 // Query: T201384_3 [L=4482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.53 # Mc/sec: 24192.91 // Query: T353109_1 [L=2171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 10896.25 // Query: T353109_2 [L=2171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0076 15.7 0.3 0.015 14.8 0.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.3 9.1e-07 0.015 1 19 [] 1535 1553 .. 1535 1553 .. 0.96 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 9.1e-07 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+ +WM+L +IILS+ sQ T353109_2 1535 SFVVTWMKLKTIILSKLSQ 1553 7999**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 10896.25 // Query: T353109_3 [L=2170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 11085.72 // Query: T101436_1 [L=4057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.60 # Mc/sec: 19343.98 // Query: T101436_2 [L=4057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 19671.84 // Query: T101436_3 [L=4057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.59 # Mc/sec: 19671.84 // Query: T106664_1 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 3072.53 // Query: T106664_2 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.53 # Mc/sec: 2898.61 // Query: T106664_3 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3135.24 // Query: T316517_1 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 9080.49 // Query: T316517_2 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 9080.49 // Query: T316517_3 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 9080.49 // Query: T258970_1 [L=2716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 13875.03 // Query: T258970_2 [L=2715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 6.7 6.6 9.7 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00059 9.7 6 41 .. 1725 1760 .. 1711 1771 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00059 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258970_2 1725 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1760 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 511 (0.0313382); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.74 # Mc/sec: 10496.15 // Query: T258970_3 [L=2715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 11768.41 // Query: T034597_1 [L=871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.60 # Mc/sec: 4152.97 // Query: T034597_2 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 4786.39 // Query: T034597_3 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4444.50 // Query: T183404_1 [L=1139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 5172.20 // Query: T183404_2 [L=1139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.69 # Mc/sec: 4722.44 // Query: T183404_3 [L=1139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4863.41 // Query: T219675_1 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 5669.64 // Query: T219675_2 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 5883.59 // Query: T219675_3 [L=1089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 4867.88 // Query: T124662_1 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.62 # Mc/sec: 7438.16 // Query: T124662_2 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.78 # Mc/sec: 5912.38 // Query: T124662_3 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 7320.09 // Query: T174044_1 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 6673.54 // Query: T174044_2 [L=1283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 6925.37 // Query: T174044_3 [L=1282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 5239.41 // Query: T256037_1 [L=360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.63 # Mc/sec: 1634.76 // Query: T256037_2 [L=359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 1937.81 // Query: T256037_3 [L=359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.59 # Mc/sec: 1740.74 // Query: T281044_1 [L=1307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.21 10.9 26.2 0.34 10.2 26.2 1.2 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 26.2 2.1e-05 0.34 47 134 .. 970 1055 .. 962 1058 .. 0.51 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 2.1e-05 DUF1510 47 sddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenvekavtnpdWkpvg 134 +++ ++e ++e k+e + e e++ ++eke ++++++e k+e +e +++ +ee+ ++++ ++ ++e ++e+ +++v + W pv+ T281044_1 970 KKERKKERKKERKKEREREREKERKKEKERKKERKKERKKERKEGRKEGRKEER--KRKERRKERRKKERKEEKCKQTVCSVHWTPVP 1055 222223333333333333333333333333333333333333333333333333..334455567788899999*************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1893 (0.116092); expected 326.1 (0.02) Passed bias filter: 628 (0.0385134); expected 326.1 (0.02) Passed Vit filter: 310 (0.0190114); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.97u 0.43s 00:00:02.40 Elapsed: 00:00:00.88 # Mc/sec: 4248.98 // Query: T281044_2 [L=1307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 11.8 39.0 0.092 11.3 39.0 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 3.7 5.6 20.7 5.2 5.1 20.7 1.1 1 CDC45 CDC45-like protein 9.4 4.8 20.6 15 4.1 20.6 1.1 1 NPR3 Nitrogen Permease regulator of amino acid transpo Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 39.0 1.7e-05 0.092 111 187 .. 965 1040 .. 935 1065 .. 0.55 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.7e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS MIP-T3 111 srkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkds 187 ++++k+k+e+kk+++ke+++e+er +k+e+k k+++++ke++ke+kk+ ++ r++ ++rere++++r++ +kk++++ T281044_2 965 KSEKKRKKERKKERKKERKRERERERKKERK-KKKERKKERKKERKKGRKEGRKEGRKRERERKEGRKEGRKKERKK 1040 3334444444444444444444443333332.233344444444444444444444444444444444444433211 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 20.7 0.00097 5.2 138 210 .. 969 1041 .. 919 1056 .. 0.44 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.00097 CDC45 138 eeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeee....edeeersrkrrrsepsakklrrr.lkkerrky 210 + ++++++e+++e+++++e+e ++e+++kk+rk+++++e+++ ++e r+r+r+r+e r++ +kker+k+ T281044_2 969 KRKKERKKERKKERKRERERERKKERKKKKERKKERKKERKKgrkeGRKEGRKRERERKE-----GRKEgRKKERKKN 1041 111111111111111111122222222222222222223233221122233333333333.....2222233333332 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 20.6 0.0027 15 42 115 .. 965 1039 .. 954 1076 .. 0.42 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0027 NPR3 42 gkwrkskkkkkkskrkrssrs.kekkskesskksesssksesseekksskeseeseekesneeekeeededdees 115 + +k+kk++kk+++k+++r+ +++++ke++kk+e++++++++++k ++ +e ++ e++++e ++e +++e + T281044_2 965 KSEKKRKKERKKERKKERKRErERERKKERKKKKERKKERKKERKKGRKEGRKEGRKRERERKEGRKEGRKKERK 1039 333333333322222222222022222222222222222222222222222222222222222222222222111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1732 (0.106219); expected 326.1 (0.02) Passed bias filter: 625 (0.0383294); expected 326.1 (0.02) Passed Vit filter: 270 (0.0165583); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:00.77 # Mc/sec: 4855.98 // Query: T281044_3 [L=1307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.47 9.0 37.5 0.66 8.5 37.5 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 3.3 7.7 5.6 4.9 7.1 5.6 1.1 1 DDHD DDHD domain 7.4 6.1 13.0 11 5.5 13.0 1.1 1 AAA_11 AAA domain 9.2 5.4 30.2 13 4.9 30.2 1.1 1 CDC27 DNA polymerase subunit Cdc27 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 37.5 0.00016 0.66 113 218 .. 968 1039 .. 952 1059 .. 0.38 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00016 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 113 kekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgk 210 k+++k+e+ +ke +ke+ r++e+e++ke+k+kke+++e++ker++ ++++r++ ++ k++ +++gk T281044_3 968 KKERKKER---------------KKERKKERERERERERKKERKRKKERKKERKKERKEGRKEGRKEGRE-------------------KEKGKKEGK 1031 11111111...............22222222222222222222222222222222222222222222222...................222222222 PP XXXXXXXX CS MIP-T3 211 eeerskde 218 +eer+k + T281044_3 1032 KEERKKGR 1039 22222222 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 5.6 0.0012 4.9 125 186 .. 965 1030 .. 918 1071 .. 0.54 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0012 DDHD 125 klgeeesaklaesqksherssesskesqeskaaesssasssaksssaee........kveledkelee...ea 186 +++++e++k+ +++ ++er++e++ e++++++++++ +++++k+ ++ + + e+ e T281044_3 965 RVKKKERKKERKKERKKERERERERERKKERKRKKERKKERKKERKEGRkegrkegrE-------KEKgkkEG 1030 2333333333333333333333333333333332222222222222211223322221.......11121111 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 13.0 0.0028 11 109 192 .. 962 1040 .. 943 1059 .. 0.52 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0028 AAA_11 109 leekvekrlekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleee 192 ++++v+k+ +k+++k + ke ++e+e+++k+ r++++e ++k+++k++++ ++e rk +e+++ +ke +++e++ ++ T281044_3 962 WATRVKKKERKKERKKERKKERERERERERKKERKRKKE-----RKKERKKERKEGRKEGRKEGREKEKGKKEGKKEERKKGRK 1040 555666666565544444444444444444444444444.....3344444444444444444444444444444444443333 PP >> CDC27 DNA polymerase subunit Cdc27 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 30.2 0.0032 13 229 307 .. 967 1045 .. 958 1069 .. 0.70 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0032 CDC27 229 kkkteakeqkveeeseeeke.kedkeleddsaaeeeeeeekstkkekrrqkklessdeeeeerekekekrkrlkkmmeDe 307 kkk+ +ke k+e ++e e e ++++++e + ++e ++e k ++ke+r+ +++e+ ++e+ ++e +ke+rk+ +km D+ T281044_3 967 KKKERKKERKKERKKERERErERERKKERKR-KKERKKERKKERKEGRKEGRKEGREKEKGKKEGKKEERKKGRKMQADS 1045 2333333333333332222202223323333.4566666666777899****************************9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1735 (0.106403); expected 326.1 (0.02) Passed bias filter: 701 (0.0429903); expected 326.1 (0.02) Passed Vit filter: 308 (0.0188888); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.89u 0.45s 00:00:02.34 Elapsed: 00:00:00.78 # Mc/sec: 4793.72 // Query: T287707_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 6588.20 // Query: T287707_2 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-08 32.2 0.0 1.4e-07 31.2 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.0 8.3e-12 1.4e-07 15 78 .. 186 249 .. 178 251 .. 0.84 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 8.3e-12 Transposase_1 15 getpkkvpkpelhq.kkvmltVwW.sakgliyyeflppgetitsevYaqqldklr.qklqekrpalv 78 +e pk+++kp+lh k + W s + l +y+fl+pg+t se+Yaqq+d+++ + lq+++palv T287707_2 186 EEGPKHFKKPNLHP*KDLVT--GW*SVACLTHYSFLNPGTTTVSEKYAQQIDEMH*K-LQCLQPALV 249 5789***********99655..5*******************************743.455556555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 7215.65 // Query: T287707_3 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 6494.08 // Query: T214590_1 [L=2535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 10214.37 // Query: T214590_2 [L=2534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 10660.80 // Query: T214590_3 [L=2534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-86 290.5 25.3 2e-82 276.8 5.3 2.5 3 Transposase_22 L1 transposable element 6.1e-06 26.3 0.0 1.2e-05 25.4 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 2.3 6.9e-11 5.6e-07 2 76 .. 1688 1760 .. 1686 1761 .. 0.91 2 ! 276.8 5.3 2.5e-86 2e-82 209 368 .] 1864 2025 .. 1858 2025 .. 0.99 3 ? -6.0 2.4 2 1.6e+04 83 116 .. 2368 2399 .. 2330 2407 .. 0.47 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 6.9e-11 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakelealke 76 G+ + rk +nsk +++ + +k++sssPa e++ +++df++l + ++++ ++++lk e a+el+ lk+ T214590_3 1688 GRNQ---SRKAENSKNQSTYSSPKDRSSSPAM--EQSSMENDFDKLTEVGFRRpviTNFSKLKGMFEPIARELKTLKK 1760 5555...8************************..******************9555699***************8875 PP == domain 2 score: 276.8 bits; conditional E-value: 2.5e-86 HHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHH CS Transposase_22 209 enilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdv 301 +n+l++ii+enfPnl+++an++iqei+r P+r++ +ra++rhiivr+tk ++k+kil+a+rekG +t kGkPirltadlsae l+arr+w+++ T214590_3 1864 KNTLQDIIQENFPNLARQANIQIQEIQRMPQRYSLRRATPRHIIVRFTKFEMKEKILRAAREKGWLTHKGKPIRLTADLSAENLQARRKWGPI 1956 7******************************************************************************************** PP HHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 302 iqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ++ilkek+fqPr++yPakls+i++Gei f dk++lrd+++trPal+++lke +++r++ yq+l++++ T214590_3 1957 FNILKEKNFQPRISYPAKLSFISEGEINTFTDKQMLRDFVTTRPALQEFLKEalNMKRNNWYQPLQKHA 2025 ******************************************************************996 PP == domain 3 score: -6.0 bits; conditional E-value: 2 XXXX..................XXXXXXXXXXXX CS Transposase_22 83 kqlkiikekqentskqvmemnkellelktkvdel 116 qlk ekqe+t + +e+ ++++ +e+ T214590_3 2368 SQLK-ELEKQEQTHSKAS-RRQEITKIRAELKEI 2399 2333.2334444433221.222333333333333 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 0.0 1.5e-09 1.2e-05 1 113 [] 2060 2255 .. 2060 2443 .. 0.76 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 1.5e-09 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH........................EEEEEEESSSTTSSEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla........................dadaskfgtgkgqggvavls 70 lt Nvng ++ + ++ +la+++k++da v ++qE++ ++ +l+ ++d++ ++ +++++g +++ T214590_3 2060 LTLNVNG----LNAPIKRHRLANWIKSQDASVCCIQETHLTCRDTHRLKIkgwrkiy*angrqkkagvvilvtnKTDFKPTKVKRDKEGHYIMV 2149 699****....7778899*******************999998887777799******988888888888887766777777777777777888 PP CSEEEEE................................EEEEEE-SS.............................................. CS xxxxxxx................................xxxxxxxxx.............................................. RF Exo_endo_phos 71 rfpltsl................................vivlGDfNa.............................................. 86 + ++++ i++G fN+ T214590_3 2150 KGSIQQEehtilniyppntgvprfikqvlrdlqkdldshTIIMGEFNIplstldrstrqrvnkdiqdlnsalhqadlidiyrtlhpksaeytff 2243 877766688999************************************8885555555544444444444444444333333333333333333 PP ........-BEEEEEEHHHHTTEEEEEEECCHSSB CS ........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldeplaSDH 113 SDH T214590_3 2244 saphctysK-----------------------SDH 2255 333222221.......................333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2534 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1243 (0.0762296); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.67 # Mc/sec: 10819.92 // Query: T183085_1 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 5207.77 // Query: T183085_2 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.64 # Mc/sec: 4394.06 // Query: T183085_3 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 15.4 2.2 26 5.0 0.0 3.5 3 AMPKBI 5'-AMP-activated protein kinase beta subunit, inter Domain annotation for each model (and alignments): >> AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.0 0.0016 26 9 61 .. 780 833 .. 776 837 .. 0.83 2 ? 5.0 0.0 0.0017 27 9 53 .. 850 893 .. 845 903 .. 0.84 3 ? 2.6 0.1 0.0089 1.5e+02 9 53 .. 918 963 .. 914 973 .. 0.81 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0016 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikngvlavgctt 61 Pp L+++ l++ss+s++ + +++ + P + ++HL ++ + + l +t T183085_3 780 PPSLRRLPLQRSSTSSSRQDRETHSITAPlSSTAIQHLQQQAGQGDALHHCTTF 833 99*********999999999999999999456789***9999998887766655 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0017 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikng 53 Pp L++ l++ s+s+a + d+ + p P+ ++HL ++ + + T183085_3 850 PPSLHHFPLQRFSTSTAGQGDTLHPAP-PSSTAIQHLQQQAGQGD 893 99*********8888877777777777.*********99887765 PP == domain 3 score: 2.6 bits; conditional E-value: 0.0089 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikng 53 Pp L++ l++ss+s++ + ++ + P + ++HL ++ + + T183085_3 918 PPSLHHFPLQRSSTSSSRQDRETPSITAPlSSTAIQHLQQQAGQGD 963 99*********88888888888778888845678999988877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 4075.65 // Query: T274831_1 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 15.3 0.0 0.025 14.7 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 1.5e-06 0.025 8 87 .. 796 877 .. 795 900 .. 0.78 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.5e-06 EEEEE.ECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT...SCSEEEEEES-HHHHHHHHCCCHHHHHT CS RNase_H 8 tDGsc.lgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkal..ksdekvniytDSkYvvkgitqwvhrwkkn 87 tDGs+ + ++++ a++ + +r+ ++ +e + + +EL+A++ +++++ +++++v++yt S+ v +g+ w +w+k+ T274831_1 796 TDGSS*Y-AGITRKWTALALQTLSRTSLKHRPEGKYSQCTELQAMHLVVQSA*kEEWPDVQLYTNSRAVANGLAGWSGTWEKH 877 6666332.244567777554444677777777899***************8776999***********************653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 6920.68 // Query: T274831_2 [L=1645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-12 48.2 0.5 1.6e-12 47.5 0.5 1.2 1 GP41 Retroviral envelope protein 1.5e-09 37.6 0.0 2.2e-09 37.0 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.5 0.5 2e-16 1.6e-12 27 168 .. 76 213 .. 69 215 .. 0.87 Alignments for each domain: == domain 1 score: 47.5 bits; conditional E-value: 2e-16 HHHHHHHHHHHHHHHHSSC.HH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHHHH CS GP41 27 letQeeidkklearvnale.evvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqektl 124 + Q +id kl +++n l v+ lG+ v sl+ +++l+C n C+T+ yn++e +We +k hl+g ++sld++kl++++ ++++++ + T274831_2 76 WNSQTNIDLKLANQINDLR*I-VMWLGDRVSSLEYRIQLQCDWNTSDFCITPHLYNETEhEWEIIKRHLKGH--TGNLSLDIAKLKEQVFQASQAHLTLM 172 5789999****9999998555.59**********************************************94..4589********************** PP HHHTCHHHHH.HHHHHGCHHHHHHHHH.HHHHHHHHHCHHHHHHH CS GP41 125 qeldkldklaqslannfkslnWvsyik.ltvliiavgvalrvvli 168 + + ++ a +++ ++nW++ k l+ +i ++++l++ ++ T274831_2 173 PGTEVFEGAA----DGLAAINWLKRTKtLGGSVISMMIVLLIGVV 213 *877777777....8999999998765377889999999988654 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 0.0 2.7e-13 2.2e-09 107 221 .. 432 538 .. 419 538 .. 0.87 Alignments for each domain: == domain 1 score: 37.0 bits; conditional E-value: 2.7e-13 .................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 107 sflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklv 206 s+ + ++ + ++++ + +y+ + lp G v+S +l+ ++++ l +++ +++tl++ + Di+++ s++e+ + l+ ++++l g +in +K++ T274831_2 432 SCPKPHQKKFAFSWQ--GSQYTFTILPKGYVNSTALCHNLIQRYLDHFSL-PQDITLVHHIGDIMLIGASEQEVANTLDLLVRYLHARGWEINLTKIQEP 528 333334456667776..899****************************98.69*********************************************** PP .....ESSEEETTEE CS RVT_1 207 lfsgkseevkyLGvt 221 s++vk+LGv+ T274831_2 529 -----STSVKFLGVQ 538 .....9*******95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 7023.98 // Query: T274831_3 [L=1644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 6624.23 // Query: T376466_1 [L=550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.69 # Mc/sec: 2280.37 // Query: T376466_2 [L=550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.62 # Mc/sec: 2537.83 // Query: T376466_3 [L=550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.54 # Mc/sec: 2913.81 // Query: T293983_1 [L=2134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.75 # Mc/sec: 8140.01 // Query: T293983_2 [L=2134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 8847.84 // Query: T293983_3 [L=2133] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2133 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 9387.92 // Query: T001845_1 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 6029.75 // Query: T001845_2 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 5934.05 // Query: T001845_3 [L=1369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 7832.95 // Query: T004821_1 [L=2422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-19 68.6 0.0 1.1e-18 67.7 0.0 1.3 1 RNase_H RNase H 9.2e-15 54.6 0.0 1.5e-14 53.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 9.6e-11 41.7 0.0 2e-10 40.7 0.0 1.5 1 RVP Retroviral aspartyl protease 1.9e-10 40.8 0.0 3.3e-10 40.1 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.7 0.0 2.6e-22 1.1e-18 5 138 .. 1507 1644 .. 1504 1644 .. 0.86 Alignments for each domain: == domain 1 score: 67.7 bits; conditional E-value: 2.6e-22 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.HHTTSSSETTSSBH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.kknawkttseqkpv 98 +Y D s++ n +ge++ag+ v+ + a + +++l++ +++++ L+A+i aL+ + ++++vniytDS+Y++ +++ vh++ k++ + +s +k++ T004821_1 1507 ELYMDRSSFVNpQGERCAGYaVVTLD-AVTEAKSLPQDTSAQKVKLIALIWALElS--EGKTVNIYTDSRYAFLTLQ--VHGAlYKEKGPLKSGGKDI 1599 68*********89999****766766.668999999******************55..9**************9554..56653455666899999** PP TT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlA 138 k +e+ +l++++ k++kv ++h++gH+ + gN +aD+ A T004821_1 1600 KYqQEILQLVEAVWKPQKVAVMHCRGHQRAstsiALGNSQADSEA 1644 *889***********************655567778******865 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.9 0.0 3.6e-18 1.5e-14 102 174 .. 717 789 .. 706 802 .. 0.89 Alignments for each domain: == domain 1 score: 53.9 bits; conditional E-value: 3.6e-18 Gag_p30 102 reslklyrqlllaglrgaarrptnlakvkevvq.gkeespaaflerlkeayrrytpydpedpeqkasvalsfia 174 ++l+ yr++ll gl+ a++ tn+ kv ev gk+espa f erl eay +ytp+dp++pe+++ +++++++ T004821_1 717 MQRLNRYREALLEGLKKGAQKATNVNKVSEV-I*GKDESPAQFYERLCEAYPMYTPFDPDSPENQCMITMALVK 789 567899**********************996.7779**********************************9986 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.7 0.0 4.8e-14 2e-10 13 100 .. 942 1024 .. 935 1025 .. 0.92 Alignments for each domain: == domain 1 score: 40.7 bits; conditional E-value: 4.8e-14 TEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 13 gkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 g+ ie+l+ tGA+++v++ P + k++ + G++g ++++ ++ ++ ++++ ++l + ++p++llGrdlL+kl++++ T004821_1 942 GQNIEFLVNTGAEHSVVTTPVAPLS----KKTIDIIGATGVLaKQAFCLPQTCTIGGHEVTY--QFLYMLDCPLPLLGRDLLSKLKATI 1024 5789*********************....9999999**999978889999999999999999..9999999***************998 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.0 8.1e-14 3.3e-10 3 86 .. 1772 1851 .. 1770 1864 .. 0.92 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 8.1e-14 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafref 86 +p e +qvD+t+++ + gg+ yllv + ++sr++ a+++++ +a +v+++l r + +g p+r+ sDng ++++ +r+ T004821_1 1772 APFEDLQVDFTKMS--KCGGNRYLLVLVCTYSRWVEAYPTRTG-KACEVTCVLLRDLNPTFGL-PLRISSDNGLVFVASWYRRQ 1851 689999********..99999**********************.*******************.*************9988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.71 # Mc/sec: 9759.06 // Query: T004821_2 [L=2421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-21 75.5 0.0 5.1e-21 75.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.1 0.0 3.1e-25 5.1e-21 1 222 [] 1086 1258 .. 1086 1258 .. 0.95 Alignments for each domain: == domain 1 score: 75.1 bits; conditional E-value: 3.1e-25 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkv 97 +pK+g+++yR+i d+ ++n++++ l++ p+ + l+ + + +++ l lk+aF+s++l+ +++kl+af+ T004821_2 1086 VPKPGTKDYRLI----QDLHLVNQATVT---------LHPTVPNPYTL-------------LWLLPAEdSWFTYLGLKDAFFSIRLAPESQKLFAFQW 1157 69*********9....8***********.........99999999999.............55555555***************************** PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 +++ g+ +++y+++ lpqG+++S ++f ++ + l+++ +r g++ll+Y+DD+l+ + + + ++++ +l+++g T004821_2 1158 EDP-------------------GSGVTTQYTWTQLPQGFKNSTTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCG 1236 *98...................7788************************************************************************ PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ ++ev+yLG+t+ T004821_2 1237 YKVSKKKAQIC-----QQEVRYLGFTI 1258 ***********.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 9619.54 // Query: T004821_3 [L=2421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-18 67.5 1.7 5.1e-16 58.7 0.8 2.2 2 Gag_p30 Gag P30 core shell protein 8e-13 48.1 0.2 2e-12 46.8 0.0 1.7 2 Gag_MA Matrix protein (MA), p15 0.001 19.1 0.0 0.0018 18.3 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.7 0.8 9.5e-20 5.1e-16 2 96 .. 616 711 .. 615 719 .. 0.90 2 ! 7.5 0.0 0.00045 2.4 174 210 .. 787 823 .. 783 824 .. 0.93 Alignments for each domain: == domain 1 score: 58.7 bits; conditional E-value: 9.5e-20 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne.vdeafpltrpdwdy 96 y f+ +dl n k+n ps++ +pq++ l+++i+ th+ptw dc q+l l+ t+er+rvl a k ++ + q p+e v +p t p+wd T004821_3 616 YQLFTPTDLLNRKNNTPSYTGKPQAIIDLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEyVRIQLPGTDPQWDP 711 667999************************************************************99877666666655448899********95 PP == domain 2 score: 7.5 bits; conditional E-value: 0.00045 Gag_p30 174 aqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 q++ dir+klq+ g+ ++++++l+ a++v+ r+ T004821_3 787 SQTTEDIRRKLQKQAGFVGMNMSQLLEIANQVFVNRD 823 6999*****************************9886 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.8 0.0 3.7e-16 2e-12 31 105 .. 425 496 .. 413 520 .. 0.82 2 ? -3.5 0.1 1.3 7.3e+03 37 51 .. 1227 1241 .. 1223 1242 .. 0.86 Alignments for each domain: == domain 1 score: 46.8 bits; conditional E-value: 3.7e-16 HHHHHHHHHTT.GGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXXXXXX CS Gag_MA 31 kkklitlCsse.WptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflpskpl 105 +kl+tlC+ + +l+vgWP+eG+ d ++++kv +kv + G+ Dq pYi tW +Lv dPP vk +s+++ T004821_3 425 LGKLRTLCEID*A-ALEVGWPTEGSLDRSLVSKVWHKVTGK---GYLDQFPYIDTWLQLVLDPPTVVKRIGSSNTS 496 5677777765333.79**********************966...***********************998777665 PP == domain 2 score: -3.5 bits; conditional E-value: 1.3 HHHTTGGGGSSS--T CS Gag_MA 37 lCsseWptlnvgWPr 51 Cs W t+++++Pr T004821_3 1227 PCSGTWRTVGIRYPR 1241 5999*********97 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 3.3e-07 0.0018 84 117 .. 1848 1881 .. 1835 1883 .. 0.93 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 3.3e-07 rve 84 reflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++ ++ lgi+++++ +++pq+ GkvE +n+t+k+ T004821_3 1848 QKTAKVLGITWKLHTAYQPQSSGKVEWMNQTIKN 1881 778899**************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 10337.42 // Query: T361745_1 [L=1328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.68 # Mc/sec: 5587.03 // Query: T361745_2 [L=1328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.77 # Mc/sec: 4934.00 // Query: T361745_3 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-10 41.3 0.0 1.7e-10 40.6 0.0 1.2 1 FBPase Fructose-1-6-bisphosphatase, N-terminal domain Domain annotation for each model (and alignments): >> FBPase Fructose-1-6-bisphosphatase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.6 0.0 1e-14 1.7e-10 103 133 .. 138 168 .. 137 179 .. 0.91 Alignments for each domain: == domain 1 score: 40.6 bits; conditional E-value: 1e-14 FBPase 103 kyvvafDPlDGSSnidtnvsvGTifsiyrkk 133 ky+v+fDPlD SSnid+ s+GTif++yrk+ T361745_3 138 KYMVCFDPLDESSNIDCLASIGTIFAVYRKV 168 8****************************76 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 751 (0.0460567); expected 326.1 (0.02) Passed bias filter: 478 (0.0293144); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.57 # Mc/sec: 6545.38 // Query: T336908_1 [L=673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 3702.57 // Query: T336908_2 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3769.56 // Query: T336908_3 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3769.56 // Query: T276141_1 [L=7178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 29 (0.00177849); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:00.64 # Mc/sec: 32086.00 // Query: T276141_2 [L=7177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 47 (0.00288237); expected 326.1 (0.02) Passed bias filter: 13 (0.000797253); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.64 # Mc/sec: 32081.53 // Query: T276141_3 [L=7177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 30 (0.00183981); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.65 # Mc/sec: 31587.96 // Query: T125913_1 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 96 (0.0058874); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 9726.82 // Query: T125913_2 [L=1734] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1734 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 9186.44 // Query: T125913_3 [L=1733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1733 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 9181.15 // Query: T040697_1 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2524.26 // Query: T040697_2 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2569.03 // Query: T040697_3 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 2569.03 // Query: T018824_1 [L=7383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-29 100.9 16.4 6.3e-29 100.9 16.4 2.5 3 CCDC144C CCDC144C protein coiled-coil region 1.5e-15 57.4 6.5 1.5e-15 57.4 6.5 2.4 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.1 5.9 2 1.6e+04 191 237 .. 157 203 .. 145 254 .. 0.59 2 ! 100.9 16.4 7.7e-33 6.3e-29 1 96 [. 703 798 .. 703 799 .. 0.99 3 ? -3.3 1.3 0.43 3.5e+03 75 107 .. 1168 1200 .. 1155 1214 .. 0.73 Alignments for each domain: == domain 1 score: -6.1 bits; conditional E-value: 2 CCDC144C 191 aqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 + + l ++++e+e+ +++ +kq ++e +se + L + + T018824_1 157 TLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 44444444555555555555555555555555555555544444433 PP == domain 2 score: 100.9 bits; conditional E-value: 7.7e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018824_1 703 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 798 9*********************************************************************************************95 PP == domain 3 score: -3.3 bits; conditional E-value: 0.43 CCDC144C 75 lnskLekekqnkerletevesyrsrLaaAiqdh 107 + k+ k k e++ te+e y+ aaA++ T018824_1 1168 VDCKFYKMKTAYEEVTTELEEYKEAFAAALKAN 1200 556777888999999999999999999998753 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.9 2.5 2 1.6e+04 34 74 .. 151 191 .. 149 197 .. 0.87 2 ? -7.5 6.2 2 1.6e+04 30 87 .. 725 781 .. 710 794 .. 0.56 3 ! 57.4 6.5 1.8e-19 1.5e-15 3 69 .. 1160 1225 .. 1159 1227 .. 0.93 Alignments for each domain: == domain 1 score: -4.9 bits; conditional E-value: 2 DUF3496 34 kqlyleelkvrksLsnklnktnerLaevstkllvekeqnrs 74 ++ y++ l++++ L l++++er + + k ke n++ T018824_1 151 QRKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNT 191 568999********************999999999987765 PP == domain 2 score: -7.5 bits; conditional E-value: 2 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018824_1 725 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 781 554.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 57.4 bits; conditional E-value: 1.8e-19 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018824_1 1160 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1225 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.76u 0.46s 00:00:02.22 Elapsed: 00:00:00.69 # Mc/sec: 30610.88 // Query: T018824_2 [L=7383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-29 102.1 13.6 2.7e-29 102.1 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region ------ inclusion threshold ------ 3.1 7.7 19.2 0.025 14.5 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 1.2 3.3e-05 0.27 96 143 .. 797 842 .. 784 843 .. 0.87 2 ! 102.1 13.6 3.3e-33 2.7e-29 184 304 .. 881 992 .. 870 993 .. 0.94 3 ? -7.9 20.5 2 1.6e+04 121 231 .. 1040 1154 .. 1013 1157 .. 0.78 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 3.3e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018824_2 797 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 842 689**********************9554.57..89*********9976 PP == domain 2 score: 102.1 bits; conditional E-value: 3.3e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018824_2 881 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 971 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018824_2 972 MNECD-H*KESLFRYEREKAER 992 ****7.55589**********8 PP == domain 3 score: -7.9 bits; conditional E-value: 2 CCDC144C 121 fqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yig 214 + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ +++ T018824_2 1040 VESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQ 1137 44555778888999999999999999999999844458899999999999999888777777889999999999999999977666666666552677 PP CCDC144C 215 kqesleerlsqlqsenl 231 +q ++ +l ql+++ + T018824_2 1138 EQAQYKKQLEQLNKDII 1154 88899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 1.1 3.1e-06 0.025 24 94 .. 883 952 .. 879 953 .. 0.95 2 ? -2.5 11.1 0.53 4.3e+03 9 96 .. 1065 1150 .. 1039 1156 .. 0.85 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 3.1e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018824_2 883 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 952 68999********************************************************76.9999986 PP == domain 2 score: -2.5 bits; conditional E-value: 0.53 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018824_2 1065 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 1150 55555666678899999**************999999999******************************9999984..467666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 692 (0.0424384); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.82u 0.42s 00:00:02.24 Elapsed: 00:00:00.68 # Mc/sec: 31061.04 // Query: T018824_3 [L=7382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 34.5 0.4 1.9e-08 34.0 0.4 1.1 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein 6.4e-07 28.7 3.0 8.7e-07 28.2 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.4 2.3e-12 1.9e-08 185 228 .. 2115 2158 .. 2110 2164 .. 0.92 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.3e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018824_3 2115 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 2158 679**************************************998 PP >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 3.0 1.1e-10 8.7e-07 145 185 .. 842 882 .. 842 884 .. 0.97 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.1e-10 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018824_3 842 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 882 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.51u 0.37s 00:00:01.88 Elapsed: 00:00:00.64 # Mc/sec: 32997.89 // Query: T062527_1 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.2 6.1 16.9 0.6 9.6 0.0 4.7 4 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.2 0.03 4.9e+02 6 30 .. 1306 1330 .. 1304 1336 .. 0.59 2 ? 9.6 0.0 3.7e-05 0.6 2 35 .. 1358 1391 .. 1357 1392 .. 0.94 3 ? 4.5 1.4 0.0014 23 2 30 .. 1430 1458 .. 1422 1461 .. 0.62 4 ? -3.0 0.8 0.31 5.1e+03 5 11 .. 1486 1492 .. 1482 1497 .. 0.47 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.03 PT 6 PtaqPTvqPTgqPtaqPTdqPtaqP 30 P+ +P+ P+ P+ P+ P+ P T062527_1 1306 PSIHPSILPSIHPPTRPSIHPSIHP 1330 5555555566666666665555555 PP == domain 2 score: 9.6 bits; conditional E-value: 3.7e-05 PT 2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 p+ P+++P++ P+ ++ P+ P+ P+ +P+ T062527_1 1358 PSIHPSTHPPDRPSIHLSIHPSIHPSIHPSTKPS 1391 7889****************************98 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0014 PT 2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqP 30 p+ +P+ +P+ P+ P+ P+ P+ P T062527_1 1430 PSIYPSIHPSIHPSIHPSTKPSIHPSIHP 1458 55566666666666666666666665555 PP == domain 4 score: -3.0 bits; conditional E-value: 0.31 PT 5 qPtaqPT 11 P+++P+ T062527_1 1486 HPSSHPP 1492 4444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 10145.73 // Query: T062527_2 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 10145.73 // Query: T062527_3 [L=1986] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1986 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 10330.20 // Query: T276215_1 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 790 (0.0484484); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3141.30 // Query: T276215_2 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3141.30 // Query: T276215_3 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 3141.30 // Query: T111993_1 [L=598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.8 9.6 4.6 3.3 7.7 4.6 2.1 1 DUF4762 Domain of unknown function (DUF4762) Domain annotation for each model (and alignments): >> DUF4762 Domain of unknown function (DUF4762) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 4.6 0.0002 3.3 20 50 .. 505 535 .. 499 549 .. 0.82 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0002 DUF4762 20 ceikyqnvtsGGvtackmittctdkhGttts 50 c n+t vt+c m +t +h tt+ T111993_1 505 CHTTSYNITPCPVTSCHMTSTSHQRHHTTSH 535 777778********************99975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 419 (0.0256961); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 3289.95 // Query: T111993_2 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.076 12.7 0.1 0.22 11.2 0.1 1.7 1 GPHH Voltage-dependent L-type calcium channel, IQ-associ Domain annotation for each model (and alignments): >> GPHH Voltage-dependent L-type calcium channel, IQ-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 1.3e-05 0.22 19 58 .. 478 517 .. 476 520 .. 0.90 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 1.3e-05 GPHH 19 peAtgrikvsdllellrklepPLGfgkkcparvaykrlir 58 p+ +++ +++ +++ ++ PLG + p+ + +++++ T111993_2 478 PTMCNTTSHQGHYNMSHHITSPLGYHTVIPHHTTSHHVLS 517 6778899*************************99998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 3222.48 // Query: T111993_3 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 512 (0.0313995); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 3222.48 // Query: T293596_1 [L=271] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (271 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 78 (0.00478352); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.49 # Mc/sec: 1582.21 // Query: T293596_2 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.51 # Mc/sec: 1514.56 // Query: T293596_3 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1576.38 // Query: T323207_1 [L=2089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-65 215.4 491.0 3.6e-08 33.4 4.4 46.2 40 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 2.9 2e-07 0.0033 29 48 .. 56 75 .. 47 75 .. 0.95 2 ! 11.6 3.8 1.4e-05 0.23 2 43 .. 83 124 .. 83 129 .. 0.90 3 ! 25.8 6.2 5.2e-10 8.5e-06 1 36 [. 135 169 .. 135 171 .. 0.94 4 ! 12.9 9.4 5.3e-06 0.086 3 50 .] 169 237 .. 167 237 .. 0.91 5 ! 4.2 7.1 0.0028 45 2 47 .. 211 246 .. 211 253 .. 0.68 6 ! 12.1 2.7 9.8e-06 0.16 3 26 .. 256 278 .. 255 285 .. 0.91 7 ! 14.8 4.9 1.4e-06 0.023 10 39 .. 305 333 .. 305 335 .. 0.96 8 ! 19.9 0.2 3.6e-08 0.00058 22 47 .. 349 374 .. 341 376 .. 0.91 9 ! 21.0 5.7 1.6e-08 0.00027 8 37 .. 388 416 .. 381 417 .. 0.90 10 ! 3.7 1.7 0.0042 68 22 39 .. 413 430 .. 412 433 .. 0.87 11 ! 9.0 5.8 9.1e-05 1.5 2 45 .. 488 530 .. 446 532 .. 0.90 12 ? 0.9 1.6 0.03 4.8e+02 19 39 .. 525 545 .. 522 555 .. 0.89 13 ! 6.3 4.0 0.00061 9.9 19 49 .. 556 588 .. 550 588 .. 0.87 14 ! 5.8 10.2 0.00086 14 5 49 .. 620 660 .. 592 660 .. 0.94 15 ! 4.5 0.9 0.0023 38 1 19 [. 666 683 .. 666 686 .. 0.91 16 ! 17.3 9.3 2.3e-07 0.0038 1 40 [. 687 737 .. 687 740 .. 0.94 17 ! 3.4 2.6 0.0049 79 30 49 .. 758 777 .. 753 778 .. 0.79 18 ? -1.9 0.1 0.23 3.7e+03 23 33 .. 789 799 .. 779 801 .. 0.65 19 ! 18.3 0.3 1.1e-07 0.0018 23 48 .. 834 859 .. 828 859 .. 0.89 20 ! 24.0 0.9 1.8e-09 2.9e-05 29 50 .] 861 882 .. 861 882 .. 0.99 21 ! 12.2 0.4 8.9e-06 0.14 31 47 .. 884 900 .. 884 903 .. 0.94 22 ! 4.6 1.4 0.0021 34 14 39 .. 899 924 .. 899 928 .. 0.89 23 ! 8.6 2.1 0.00012 2 4 30 .. 934 959 .. 932 962 .. 0.89 24 ! 6.6 0.5 0.0005 8.2 3 18 .. 965 979 .. 964 983 .. 0.87 25 ! 22.4 14.5 5.8e-09 9.4e-05 1 50 [] 984 1032 .. 984 1032 .. 0.91 26 ! 8.4 2.4 0.00014 2.3 21 38 .. 1024 1041 .. 1016 1049 .. 0.82 27 ! 21.5 19.1 1.2e-08 0.00019 7 50 .] 1064 1116 .. 1038 1116 .. 0.91 28 ! 16.0 9.3 5.7e-07 0.0092 16 49 .. 1103 1136 .. 1101 1138 .. 0.91 29 ! 2.9 12.1 0.0074 1.2e+02 17 50 .] 1125 1170 .. 1123 1170 .. 0.81 30 ? 2.1 4.9 0.013 2e+02 14 38 .. 1155 1179 .. 1153 1193 .. 0.80 31 ? 0.6 33.3 0.037 6.1e+02 2 42 .. 1199 1325 .. 1198 1344 .. 0.91 32 ! 33.4 4.4 2.2e-12 3.6e-08 19 50 .] 1358 1389 .. 1347 1389 .. 0.95 33 ! 18.0 17.1 1.4e-07 0.0023 1 50 [] 1394 1455 .. 1394 1455 .. 0.96 34 ? -3.2 1.2 0.57 9.3e+03 11 11 .. 1531 1531 .. 1519 1565 .. 0.46 35 ! 2.8 0.9 0.0077 1.3e+02 8 27 .. 1732 1750 .. 1729 1752 .. 0.87 36 ! 11.4 10.5 1.6e-05 0.26 14 48 .. 1791 1837 .. 1786 1838 .. 0.74 37 ? -5.9 12.4 1 1.6e+04 9 45 .. 1841 1886 .. 1840 1891 .. 0.62 38 ? -5.0 14.2 1 1.6e+04 7 46 .. 1891 1943 .. 1890 1946 .. 0.80 39 ? -7.3 13.0 1 1.6e+04 19 46 .. 1912 1943 .. 1911 1981 .. 0.62 40 ! 22.7 3.2 4.8e-09 7.9e-05 2 36 .. 1987 2020 .. 1986 2027 .. 0.91 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 2e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323207_1 56 LPAASPGPELSPVSLHRPSS 75 9*****************98 PP == domain 2 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323207_1 83 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 124 788********.***********************99765555 PP == domain 3 score: 25.8 bits; conditional E-value: 5.2e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323207_1 135 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 169 9***********.*******************9755 PP == domain 4 score: 12.9 bits; conditional E-value: 5.3e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323207_1 169 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 237 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323207_1 211 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 246 899********.7777777777777777555433.........333 PP == domain 6 score: 12.1 bits; conditional E-value: 9.8e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323207_1 256 PALASRWPLQ-AQLLSQDVISRPK 278 9*********.******9999995 PP == domain 7 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323207_1 305 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 333 9**.************************98 PP == domain 8 score: 19.9 bits; conditional E-value: 3.6e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323207_1 349 FGPVPVQLTATNVGPKLPQVKLSRPA 374 78889********************5 PP == domain 9 score: 21.0 bits; conditional E-value: 1.6e-08 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpk 37 ++pLq + +l+++g+srps++L +A +G++ T323207_1 388 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQV 416 69***.**********************96 PP == domain 10 score: 3.7 bits; conditional E-value: 0.0042 DUF4705 22 lsrpsaqLpvAsaGpklp 39 +++ sa+Lp+As G lp T323207_1 413 PGQVSACLPAASTGTALP 430 57889*********9987 PP == domain 11 score: 9.0 bits; conditional E-value: 9.1e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323207_1 488 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 530 55557888999.***********************998887776 PP == domain 12 score: 0.9 bits; conditional E-value: 0.03 DUF4705 19 asglsrpsaqLpvAsaGpklp 39 +++l ++ + + +A +Gp++p T323207_1 525 PRRLFQAQLLPFAACPGPECP 545 789999**************7 PP == domain 13 score: 6.3 bits; conditional E-value: 0.00061 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323207_1 556 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 588 78999***************65557999*9997 PP == domain 14 score: 5.8 bits; conditional E-value: 0.00086 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323207_1 620 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 660 89999999.9***************97...5778999******** PP == domain 15 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 1 PgpAPasrrpLqapaslqa 19 Pg A as++ Lq ++ lq T323207_1 666 PGTALASWQALQ-AQILQK 683 9***********.999885 PP == domain 16 score: 17.3 bits; conditional E-value: 2.3e-07 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl.pp 40 P +APas rp qa + l+ +l rps++L +As Gp + ++ T323207_1 687 PNSAPASCRPTQAqtlttq*tlqAHHLPEHSLLRPSSCLSAASTGPAPaSQ 737 889*******************************************98555 PP == domain 17 score: 3.4 bits; conditional E-value: 0.0049 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp++ srPss+ T323207_1 758 LTHTPVPKLPPVSQSRPSSS 777 5556779***********97 PP == domain 18 score: -1.9 bits; conditional E-value: 0.23 DUF4705 23 srpsaqLpvAs 33 +psa++ +As T323207_1 789 KSPSAGPAPAS 799 55666666665 PP == domain 19 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323207_1 834 LQTKLSLPVASTGQNCPQVSLSRANS 859 678899*****************976 PP == domain 20 score: 24.0 bits; conditional E-value: 1.8e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323207_1 861 LPVASAGQNRPQVSLFTPSSCL 882 8********************9 PP == domain 21 score: 12.2 bits; conditional E-value: 8.9e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323207_1 884 VASAGAKLPQVGLSRPS 900 8***************7 PP == domain 22 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323207_1 899 PSLLLPEGMYRPSLCLTADSPCPALP 924 678999************99999987 PP == domain 23 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323207_1 934 APAFRQLVR-AQLLPHGGLFSPNSCLL 959 9*****555.***************95 PP == domain 24 score: 6.6 bits; conditional E-value: 0.0005 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323207_1 965 SAPASHWPLE-AQLMP 979 6********9.99887 PP == domain 25 score: 22.4 bits; conditional E-value: 5.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323207_1 984 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 1032 8***********.***************99876666667899*******9 PP == domain 26 score: 8.4 bits; conditional E-value: 0.00014 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323207_1 1024 SLCGPSSCLPVASVGQAR 1041 5667***********986 PP == domain 27 score: 21.5 bits; conditional E-value: 1.2e-08 DUF4705 7 srrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s rpLqa + ++glsr+s++Lpv saGp++p++gL rPss L T323207_1 1064 SSRPLQAqlflpaasaGPDCCQVGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1116 6799999****9998866667899***************************87 PP == domain 28 score: 16.0 bits; conditional E-value: 5.7e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323207_1 1103 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1136 66899**************************975 PP == domain 29 score: 2.9 bits; conditional E-value: 0.0074 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323207_1 1125 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1170 57899***9637*********9989888888888888888888765 PP == domain 30 score: 2.1 bits; conditional E-value: 0.013 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323207_1 1155 PGLLPPEGLHRPSLSLTADSPRPAS 1179 678999********99998877765 PP == domain 31 score: 0.6 bits; conditional E-value: 0.037 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323207_1 1199 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1296 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323207_1 1297 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1325 7888*********************5543 PP == domain 32 score: 33.4 bits; conditional E-value: 2.2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323207_1 1358 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1389 589****************************9 PP == domain 33 score: 18.0 bits; conditional E-value: 1.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++ lsrps+++ +Gp++ p +gL+ P sCL T323207_1 1394 TGPALAVEQPLQ-APLLPPRDLSRPSSRPHGGLPGPSPclppgspraaqflPHGGLLMPNSCL 1455 8***********.************************99*99999999999***********8 PP == domain 34 score: -3.2 bits; conditional E-value: 0.57 DUF4705 11 L 11 L T323207_1 1531 L 1531 2 PP == domain 35 score: 2.8 bits; conditional E-value: 0.0077 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323207_1 1732 ARPLQ-THLQPPGVLSGPSS 1750 69***.99999999999987 PP == domain 36 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323207_1 1791 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1837 555699*******************6666666666666666666666 PP == domain 37 score: -5.9 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323207_1 1841 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1886 7888.666666654222222277778886577888865558888888 PP == domain 38 score: -5.0 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323207_1 1891 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1943 67999998888643344444678999999999999999999999999999999 PP == domain 39 score: -7.3 bits; conditional E-value: 1 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ +ps + ++++G + pp+gL rP T323207_1 1912 AHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1943 45666666666666666665566666666666 PP == domain 40 score: 22.7 bits; conditional E-value: 4.8e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323207_1 1987 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 2020 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 10671.92 // Query: T323207_2 [L=2088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-92 302.2 523.9 3.5e-17 62.2 8.0 46.2 41 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.0 0.00023 3.7 4 24 .. 53 73 .. 52 89 .. 0.90 2 ? -0.6 15.4 0.089 1.5e+03 7 36 .. 130 158 .. 103 159 .. 0.73 3 ! 23.0 3.9 3.8e-09 6.3e-05 1 31 [. 156 185 .. 156 198 .. 0.88 4 ! 16.2 2.8 5.1e-07 0.0083 1 35 [. 199 232 .. 199 241 .. 0.90 5 ! 44.0 11.0 1e-15 1.7e-11 1 50 [] 243 291 .. 243 291 .. 0.99 6 ! 23.1 0.8 3.6e-09 5.8e-05 28 50 .] 290 312 .. 289 312 .. 0.97 7 ? -1.1 11.9 0.12 2e+03 20 41 .. 388 414 .. 317 417 .. 0.88 8 ? 0.7 3.4 0.035 5.6e+02 5 26 .. 418 438 .. 418 439 .. 0.94 9 ! 16.8 1.7 3.2e-07 0.0052 2 36 .. 477 510 .. 477 510 .. 0.98 10 ? -4.6 18.5 1 1.6e+04 1 39 [. 508 570 .. 508 599 .. 0.61 11 ? 2.1 7.7 0.013 2.1e+02 1 50 [] 560 620 .. 560 620 .. 0.78 12 ! 3.7 0.2 0.0039 64 16 37 .. 619 640 .. 618 650 .. 0.82 13 ! 2.8 13.9 0.0075 1.2e+02 2 33 .. 656 718 .. 656 718 .. 0.85 14 ! 24.5 3.3 1.3e-09 2e-05 2 35 .. 720 752 .. 720 756 .. 0.93 15 ! 4.7 0.8 0.0019 31 28 49 .. 766 787 .. 759 787 .. 0.88 16 ! 13.0 6.3 5e-06 0.082 10 48 .. 791 838 .. 789 839 .. 0.97 17 ? 1.9 0.8 0.014 2.3e+02 8 27 .. 841 860 .. 839 877 .. 0.60 18 ! 9.5 1.0 6.3e-05 1 3 29 .. 878 904 .. 876 907 .. 0.90 19 ! 14.6 1.4 1.6e-06 0.027 1 30 [. 908 936 .. 908 939 .. 0.96 20 ? 0.6 4.7 0.036 5.9e+02 18 50 .] 943 979 .. 940 979 .. 0.80 21 ! 9.7 3.3 5.6e-05 0.91 8 43 .. 980 1014 .. 979 1019 .. 0.89 22 ! 20.4 15.6 2.5e-08 0.00041 2 49 .. 1027 1073 .. 1026 1073 .. 0.94 23 ? -2.0 0.0 0.24 4e+03 7 15 .. 1074 1081 .. 1074 1086 .. 0.81 24 ! 10.1 0.6 4.1e-05 0.67 1 15 [. 1089 1102 .. 1089 1109 .. 0.82 25 ! 20.9 14.2 1.7e-08 0.00028 1 39 [. 1110 1160 .. 1110 1163 .. 0.93 26 ! 24.2 25.1 1.5e-09 2.5e-05 1 50 [] 1164 1247 .. 1164 1247 .. 0.95 27 ! 8.6 7.5 0.00012 1.9 29 50 .] 1247 1268 .. 1245 1268 .. 0.96 28 ! 21.1 2.9 1.5e-08 0.00024 17 50 .] 1268 1301 .. 1268 1301 .. 0.96 29 ! 57.2 9.2 8e-20 1.3e-15 1 50 [] 1306 1353 .. 1306 1353 .. 0.99 30 ? -3.0 8.3 0.52 8.4e+03 5 50 .] 1354 1410 .. 1354 1410 .. 0.71 31 ? 0.0 15.5 0.056 9.2e+02 5 50 .] 1387 1444 .. 1383 1444 .. 0.78 32 ? -4.3 2.2 1 1.6e+04 6 24 .. 1481 1518 .. 1480 1546 .. 0.58 33 ? -2.5 0.6 0.35 5.7e+03 4 11 .. 1556 1563 .. 1556 1579 .. 0.79 34 ! 13.1 9.9 4.6e-06 0.075 17 50 .] 1729 1762 .. 1707 1762 .. 0.85 35 ! 27.5 3.3 1.5e-10 2.4e-06 17 50 .] 1762 1795 .. 1761 1795 .. 0.96 36 ! 62.2 8.0 2.2e-21 3.5e-17 1 50 [] 1800 1849 .. 1800 1849 .. 0.99 37 ! 12.1 0.9 9.4e-06 0.15 25 44 .. 1845 1864 .. 1844 1865 .. 0.91 38 ! 10.5 5.1 3.1e-05 0.5 24 49 .. 1876 1900 .. 1870 1901 .. 0.80 39 ! 3.8 2.1 0.0036 59 26 39 .. 1899 1914 .. 1898 1923 .. 0.73 40 ? 2.4 0.7 0.011 1.7e+02 29 50 .] 1925 1947 .. 1925 1947 .. 0.86 41 ! 21.5 13.4 1.1e-08 0.00018 1 39 [. 1952 2012 .. 1952 2019 .. 0.95 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323207_2 53 APTSRQPLQAQNFLQSASTDQ 73 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.089 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323207_2 130 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 158 345555.**********************9 PP == domain 3 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323207_2 156 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 185 9***********.*****************9 PP == domain 4 score: 16.2 bits; conditional E-value: 5.1e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323207_2 199 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 232 57*******9996..7*******************9 PP == domain 5 score: 44.0 bits; conditional E-value: 1e-15 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323207_2 243 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 291 8***********.************************************9 PP == domain 6 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323207_2 290 CLLVAYEGPKSPQVDLSRPSSCL 312 9*********************9 PP == domain 7 score: -1.1 bits; conditional E-value: 0.12 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323207_2 388 NSLCRPCSCLPGASPGPALaswrlPQA 414 5799*************9965555555 PP == domain 8 score: 0.7 bits; conditional E-value: 0.035 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323207_2 418 PACQQPQQ-AQLFPHSGPFRPN 438 9*******.*********9996 PP == domain 9 score: 16.8 bits; conditional E-value: 3.2e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323207_2 477 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 510 59*********.**********************9 PP == domain 10 score: -4.6 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323207_2 508 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 570 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 11 score: 2.1 bits; conditional E-value: 0.013 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323207_2 560 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 620 789999999646557888895555444455679***********99999999999999887 PP == domain 12 score: 3.7 bits; conditional E-value: 0.0039 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323207_2 619 SLPHSILRKLSICLTVASPGHE 640 67888888889*********87 PP == domain 13 score: 2.8 bits; conditional E-value: 0.0075 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gpA a r+ Lqa p +l++s++srp +L +As T323207_2 656 GPALAKRQTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 718 9**********9999999999999999999998888888888888888888888888888776 PP == domain 14 score: 24.5 bits; conditional E-value: 1.3e-09 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+r+pLq +++l+ ++l rp+++ vA++ T323207_2 720 GQAPAFRQPLQ-AQLLPRNCLCRPRSCREVAFPS 752 89*********.*******************985 PP == domain 15 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPssC 49 +L As+G+ lpp g rP+s+ T323207_2 766 FLQSASPGQALPPKGFCRPKSS 787 6888***************997 PP == domain 16 score: 13.0 bits; conditional E-value: 5e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323207_2 791 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 838 9*********************************************98 PP == domain 17 score: 1.9 bits; conditional E-value: 0.014 DUF4705 8 rrpLqapaslqasglsrpsa 27 ++pLqa l++ +++ +++ T323207_2 841 QWPLQAKIVLKSASPGPTPS 860 56666544455555554443 PP == domain 18 score: 9.5 bits; conditional E-value: 6.3e-05 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323207_2 878 PALVCKWPLQEQNCLKSASPGPASCFP 904 9**********9*******99998776 PP == domain 19 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323207_2 908 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 936 8***********.****************9 PP == domain 20 score: 0.6 bits; conditional E-value: 0.036 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323207_2 943 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 979 56777788888888886656779999**********8 PP == domain 21 score: 9.7 bits; conditional E-value: 5.6e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323207_2 980 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 1014 57777.999**********************98877 PP == domain 22 score: 20.4 bits; conditional E-value: 2.5e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323207_2 1027 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1073 9********995..4689999**************************97 PP == domain 23 score: -2.0 bits; conditional E-value: 0.24 DUF4705 7 srrpLqapa 15 srrpLq ++ T323207_2 1074 SRRPLQ-AQ 1081 79****.66 PP == domain 24 score: 10.1 bits; conditional E-value: 4.1e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323207_2 1089 PGPAPASRCPLQA-Q 1102 9***********4.4 PP == domain 25 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323207_2 1110 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1160 9*******************************9.89**********876666 PP == domain 26 score: 24.2 bits; conditional E-value: 1.5e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323207_2 1164 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1247 8*********************************************6515699*****************************98 PP == domain 27 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323207_2 1247 LPASSPGPALPPGCVSRPDCCL 1268 9********************9 PP == domain 28 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323207_2 1268 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1301 6889****************************87 PP == domain 29 score: 57.2 bits; conditional E-value: 8e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323207_2 1306 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1353 9*********************************************..97 PP == domain 30 score: -3.0 bits; conditional E-value: 0.52 DUF4705 5 PasrrpLqa............paslqasglsrpsaqLpvAsaGpklppa....gLsrPssCL 50 Pas++ L a p+ l +s s+++p As+ p+ ++ +L rP+sCL T323207_2 1354 PASKQALLAqllpssqppl*aPNFLEPS-----SSRPPTASRWPVQAQLwl*nSLCRPRSCL 1410 7888888877775555555555555555.....88999999999997765555789999998 PP == domain 31 score: 0.0 bits; conditional E-value: 0.056 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 asr+p qa p s + p + +++As+G+++ pa++ rPss+L T323207_2 1387 TASRWPVQAqlwl*nslcrPRSCLLGTSPGPALAPTAASRGQVPacLPAARVRPSSSL 1444 599*****888888888876665555556677889999999888886799999*9998 PP == domain 32 score: -4.3 bits; conditional E-value: 1 DUF4705 6 asrrpLqa...................paslqasglsr 24 as+rpL p++l +g s T323207_2 1481 ASHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1518 56666655555555555555555555566666666653 PP == domain 33 score: -2.5 bits; conditional E-value: 0.35 DUF4705 4 APasrrpL 11 A as++pL T323207_2 1556 ALASHWPL 1563 89*****9 PP == domain 34 score: 13.1 bits; conditional E-value: 4.6e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323207_2 1729 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1762 45568**************************987 PP == domain 35 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323207_2 1762 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1795 8999****************************87 PP == domain 36 score: 62.2 bits; conditional E-value: 2.2e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323207_2 1800 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1849 9***********************************************98 PP == domain 37 score: 12.1 bits; conditional E-value: 9.4e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323207_2 1845 SSSSLPAASAGLSCPQVGLE 1864 6899**************96 PP == domain 38 score: 10.5 bits; conditional E-value: 3.1e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323207_2 1876 GPSSV-LLASPGAKLPRVSLSRPSSS 1900 45555.579***************97 PP == domain 39 score: 3.8 bits; conditional E-value: 0.0036 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323207_2 1899 SSCLPVASFGPAQlmA 1914 89*********86443 PP == domain 40 score: 2.4 bits; conditional E-value: 0.011 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323207_2 1925 LLVASSGPELdLQSAFAGPASCL 1947 789*******8677888999998 PP == domain 41 score: 21.5 bits; conditional E-value: 1.1e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323207_2 1952 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 2012 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 10860.75 // Query: T323207_3 [L=2088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-55 182.8 487.6 1.6e-08 34.4 7.0 44.5 42 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.2 0.17 2.7e+03 38 47 .. 54 63 .. 53 67 .. 0.81 2 ? -0.4 0.1 0.076 1.2e+03 7 34 .. 66 92 .. 61 94 .. 0.86 3 ! 34.4 7.0 1e-12 1.6e-08 3 49 .. 94 139 .. 92 140 .. 0.96 4 ! 31.0 7.0 1.2e-11 2e-07 1 38 [. 145 181 .. 145 191 .. 0.93 5 ! 24.0 4.7 1.9e-09 3e-05 5 38 .. 192 224 .. 186 233 .. 0.92 6 ! 22.7 6.2 4.6e-09 7.5e-05 5 38 .. 236 268 .. 235 270 .. 0.95 7 ! 10.7 3.2 2.6e-05 0.42 1 34 [. 264 292 .. 264 303 .. 0.77 8 ! 22.6 16.3 5e-09 8.1e-05 1 49 [. 306 353 .. 306 354 .. 0.99 9 ! 9.0 1.7 9e-05 1.5 8 40 .. 367 398 .. 365 401 .. 0.84 10 ! 11.1 12.5 2e-05 0.32 2 34 .. 392 423 .. 391 451 .. 0.59 11 ! 13.0 0.5 5e-06 0.081 16 35 .. 479 498 .. 472 499 .. 0.92 12 ! 31.3 8.9 9.4e-12 1.5e-07 2 50 .] 498 545 .. 497 545 .. 0.97 13 ? -1.6 0.1 0.19 3.1e+03 9 25 .. 547 572 .. 546 575 .. 0.56 14 ? 0.1 2.6 0.055 9e+02 1 33 [. 593 625 .. 593 627 .. 0.91 15 ! 15.1 6.5 1.1e-06 0.019 4 44 .. 629 686 .. 629 692 .. 0.97 16 ! 9.9 0.1 4.8e-05 0.78 14 37 .. 720 743 .. 711 748 .. 0.88 17 ! 24.1 2.8 1.8e-09 2.9e-05 18 50 .] 766 798 .. 744 798 .. 0.83 18 ! 4.8 0.8 0.0019 30 28 47 .. 828 847 .. 820 850 .. 0.85 19 ? 1.7 1.1 0.017 2.7e+02 7 27 .. 850 869 .. 848 874 .. 0.91 20 ? -0.4 0.1 0.078 1.3e+03 7 24 .. 871 887 .. 869 890 .. 0.87 21 ! 9.5 9.2 6.2e-05 1 6 38 .. 891 933 .. 887 939 .. 0.89 22 ! 10.4 6.3 3.3e-05 0.54 1 33 [. 941 972 .. 941 972 .. 0.95 23 ! 3.7 2.6 0.004 66 19 43 .. 979 1004 .. 977 1007 .. 0.80 24 ! 16.1 12.0 5.2e-07 0.0085 1 38 [. 994 1051 .. 994 1055 .. 0.87 25 ? 2.2 14.0 0.012 2e+02 1 49 [. 1047 1104 .. 1047 1105 .. 0.95 26 ? -1.1 7.4 0.13 2.1e+03 7 40 .. 1126 1157 .. 1124 1157 .. 0.79 27 ? 2.2 9.3 0.012 1.9e+02 3 26 .. 1155 1177 .. 1146 1177 .. 0.93 28 ! 15.2 2.0 1e-06 0.017 14 36 .. 1188 1210 .. 1182 1215 .. 0.91 29 ? 2.1 0.1 0.013 2.1e+02 27 39 .. 1213 1225 .. 1211 1227 .. 0.90 30 ! 5.6 11.9 0.0011 17 1 38 [. 1220 1266 .. 1220 1273 .. 0.85 31 ! 16.0 2.3 5.6e-07 0.0092 1 26 [. 1295 1319 .. 1295 1321 .. 0.95 32 ? -1.4 4.4 0.16 2.7e+03 1 29 [. 1328 1366 .. 1328 1371 .. 0.77 33 ? 1.1 8.1 0.026 4.3e+02 7 46 .. 1378 1421 .. 1373 1423 .. 0.83 34 ? -3.9 4.7 0.96 1.6e+04 10 39 .. 1413 1439 .. 1412 1449 .. 0.53 35 ? -3.9 3.2 0.99 1.6e+04 7 14 .. 1498 1523 .. 1492 1556 .. 0.56 36 ? -0.5 10.0 0.083 1.4e+03 19 39 .. 1741 1762 .. 1728 1774 .. 0.69 37 ! 7.7 3.9 0.00023 3.8 1 25 [. 1789 1812 .. 1789 1815 .. 0.94 38 ! 12.7 0.4 6.4e-06 0.1 2 15 .. 1823 1835 .. 1823 1842 .. 0.82 39 ! 12.7 19.3 6.5e-06 0.11 1 37 [. 1843 1922 .. 1843 1924 .. 0.99 40 ! 2.6 14.5 0.0088 1.4e+02 1 46 [. 1919 1964 .. 1919 1965 .. 0.57 41 ! 14.2 4.0 2.2e-06 0.036 16 38 .. 1978 2000 .. 1976 2009 .. 0.86 42 ? 2.3 0.3 0.011 1.7e+02 2 22 .. 1997 2016 .. 1996 2019 .. 0.86 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.17 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323207_3 54 LPPGSLSRPR 63 6889999985 PP == domain 2 score: -0.4 bits; conditional E-value: 0.076 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +p q + ++ ++gl rp+ L++ sa T323207_3 66 SSQPPQ-TKLMTHNGLFRPIPYLTAVSA 92 567788.999**********99999877 PP == domain 3 score: 34.4 bits; conditional E-value: 1e-12 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323207_3 94 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 139 689*******.************************************ PP == domain 4 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323207_3 145 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 181 9***********.***********************86 PP == domain 5 score: 24.0 bits; conditional E-value: 1.9e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323207_3 192 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 224 899*****.***********************98 PP == domain 6 score: 22.7 bits; conditional E-value: 4.6e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323207_3 236 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 268 9*******.***********************86 PP == domain 7 score: 10.7 bits; conditional E-value: 2.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323207_3 264 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 292 9***********5444.....4446888888887 PP == domain 8 score: 22.6 bits; conditional E-value: 5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323207_3 306 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 353 9***********.************************************ PP == domain 9 score: 9.0 bits; conditional E-value: 9e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323207_3 367 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 398 57799..889999****************99544 PP == domain 10 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ Lq +++l++ g rps++Lp++s T323207_3 392 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASSL 423 9**********.666666666666666666553 PP == domain 11 score: 13.0 bits; conditional E-value: 5e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323207_3 479 PLPHSGPSRPRWCLTVASSG 498 69****************98 PP == domain 12 score: 31.3 bits; conditional E-value: 9.4e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323207_3 498 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 545 89*********.*********************************9887 PP == domain 13 score: -1.6 bits; conditional E-value: 0.19 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323207_3 547 RRLQDelilpvrlqARLLPHNNLLWS 572 56666666633333666666666555 PP == domain 14 score: 0.1 bits; conditional E-value: 0.055 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323207_3 593 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 625 89999*******888999999999999999988 PP == domain 15 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323207_3 629 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 686 88******************************************************97 PP == domain 16 score: 9.9 bits; conditional E-value: 4.8e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ +l rps++L +A++G+ T323207_3 720 AKLLPFGSLYRPSSCLAIAFVGQD 743 67899999**************95 PP == domain 17 score: 24.1 bits; conditional E-value: 1.8e-09 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++s + ++ ++Lp AsaG+++p++ L rPssCL T323207_3 766 SSSQPVQAKLFLPKASAGQNRPEVTLCRPSSCL 798 455566899***********************9 PP == domain 18 score: 4.8 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323207_3 828 LLQLASPDQALPPSGLYRPK 847 6889***************6 PP == domain 19 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323207_3 850 SSQPLQ-GQLLATGGFCRPKS 869 689***.***********986 PP == domain 20 score: -0.4 bits; conditional E-value: 0.078 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323207_3 871 SSQPLH-TQLLSVSGLCR 887 78****.*****999866 PP == domain 21 score: 9.5 bits; conditional E-value: 6.2e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323207_3 891 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 933 788999999999999999********************99888 PP == domain 22 score: 10.4 bits; conditional E-value: 3.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323207_3 941 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 972 8***********.*****9999999******98 PP == domain 23 score: 3.7 bits; conditional E-value: 0.004 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323207_3 979 SRGLNGPSPCLSAASTGPAStSQWAL 1004 78999999999999999976566555 PP == domain 24 score: 16.1 bits; conditional E-value: 5.2e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323207_3 994 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1051 688888888888888888888888888888888**********************865 PP == domain 25 score: 2.2 bits; conditional E-value: 0.012 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323207_3 1047 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1104 89999999*************9899******************************997 PP == domain 26 score: -1.1 bits; conditional E-value: 0.13 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 s +pLqa +l++sgl rps + As+ p++pp T323207_3 1126 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPP 1157 679***777899******98..667777777765 PP == domain 27 score: 2.2 bits; conditional E-value: 0.012 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323207_3 1155 RPPASRRPAQ-AQPQPHSGLSTPS 1177 66********.************7 PP == domain 28 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323207_3 1188 PKLLPLGRFGRPSSRLPVASSGP 1210 8999******************9 PP == domain 29 score: 2.1 bits; conditional E-value: 0.013 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323207_3 1213 SFLTTAFPGPVFP 1225 79*********97 PP == domain 30 score: 5.6 bits; conditional E-value: 0.0011 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323207_3 1220 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1266 7888889**************766651678***************86 PP == domain 31 score: 16.0 bits; conditional E-value: 5.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323207_3 1295 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1319 9***********.9***********7 PP == domain 32 score: -1.4 bits; conditional E-value: 0.16 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s l + +++ T323207_3 1328 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKLFWLNSCP 1366 8899998.77799988888888888888877776666666 PP == domain 33 score: 1.1 bits; conditional E-value: 0.026 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrP 46 s + L+ + +l+ gl rps++ AsaGp l +a Ls P T323207_3 1378 SSQALR-ARLLPLGGLYRPSSGCRTASAGPALas*gpLQAQLSPP 1421 567799.9**********************997776446666655 PP == domain 34 score: -3.9 bits; conditional E-value: 0.96 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++ +++ p+a +As+ p + T323207_3 1413 PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1439 899.5555555..33444444455555442 PP == domain 35 score: -3.9 bits; conditional E-value: 0.99 DUF4705 7 srrpLqa..................p 14 s++pL + T323207_3 1498 SHWPLAShwplpr*qrsv*apcltlA 1523 55555334444445555555555552 PP == domain 36 score: -0.5 bits; conditional E-value: 0.083 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323207_3 1741 SRRPLRAQLFLPAASLGPTPaS 1762 6777788888888888887752 PP == domain 37 score: 7.7 bits; conditional E-value: 0.00023 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323207_3 1789 PGPGQASRWPRQ-AQLLPSDGISRS 1812 9***********.********9985 PP == domain 38 score: 12.7 bits; conditional E-value: 6.4e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323207_3 1823 GPAWASRRPLQA-Q 1835 9**********4.4 PP == domain 39 score: 12.7 bits; conditional E-value: 6.5e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323207_3 1843 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1922 9***************************************************************.***************7 PP == domain 40 score: 2.6 bits; conditional E-value: 0.0088 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323207_3 1919 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 1964 9***********44444444444444444444444444444.....................44444 PP == domain 41 score: 14.2 bits; conditional E-value: 2.2e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323207_3 1978 LLPFGRFGRPSSCLPVASLGPAH 2000 578889***************87 PP == domain 42 score: 2.3 bits; conditional E-value: 0.011 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323207_3 1997 GPAHSSQRPFQ-APFFPSGSL 2016 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 11270.59 // Query: T376362_1 [L=6408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.32s 00:00:01.75 Elapsed: 00:00:00.63 # Mc/sec: 29098.73 // Query: T376362_2 [L=6408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.59 # Mc/sec: 31071.52 // Query: T376362_3 [L=6408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.38s 00:00:01.77 Elapsed: 00:00:00.63 # Mc/sec: 29098.73 // Query: T369898_1 [L=3225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 619 (0.0379615); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 16186.27 // Query: T369898_2 [L=3225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.54 # Mc/sec: 17085.51 // Query: T369898_3 [L=3225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 543 (0.0333006); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.33s 00:00:01.62 Elapsed: 00:00:00.88 # Mc/sec: 10484.29 // Query: T265152_1 [L=832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4250.38 // Query: T265152_2 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 4322.45 // Query: T265152_3 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 3773.57 // Query: T004147_1 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 891 (0.0546425); expected 326.1 (0.02) Passed bias filter: 307 (0.0188274); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.86 # Mc/sec: 4214.73 // Query: T004147_2 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1326 (0.0813198); expected 326.1 (0.02) Passed bias filter: 406 (0.0248988); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.85 # Mc/sec: 4260.95 // Query: T004147_3 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 6585.11 // Query: T369908_1 [L=3676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.43s 00:00:01.88 Elapsed: 00:00:00.78 # Mc/sec: 13482.58 // Query: T369908_2 [L=3676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 471 (0.0288851); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.77 # Mc/sec: 13657.68 // Query: T369908_3 [L=3675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 541 (0.033178); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.33s 00:00:01.86 Elapsed: 00:00:00.92 # Mc/sec: 11427.77 // Query: T272766_1 [L=713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.1 1.2 0.0058 16.2 0.1 2.5 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.1 0.092 1.5e+03 11 21 .] 290 300 .. 289 300 .. 0.87 2 ! 16.2 0.1 3.5e-07 0.0058 4 20 .. 402 418 .. 402 419 .. 0.91 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.092 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272766_1 290 WRGFVLTRSFR 300 9***9988886 PP == domain 2 score: 16.2 bits; conditional E-value: 3.5e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272766_1 402 VTVMQAHVRGWLERKRL 418 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 3187.14 // Query: T272766_2 [L=712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 3339.20 // Query: T272766_3 [L=712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 36 (0.00220778); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 3843.23 // Query: T165301_1 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 6207.46 // Query: T165301_2 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 5061.47 // Query: T165301_3 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 5061.47 // Query: T091456_1 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-39 135.3 3.4 4e-39 134.6 3.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 2.6 7.3 14.7 4.4 6.5 14.7 1.3 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.6 3.4 4.9e-43 4e-39 335 524 .. 3026 3211 .. 3012 3227 .. 0.87 Alignments for each domain: == domain 1 score: 134.6 bits; conditional E-value: 4.9e-43 XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHH CS TLV_coat 335 vapngtvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqfkkLq 430 ++++g +f+c+ +t + l++++++ C l+ l P+i++++g+ + +++ + R a++l++lL+GLgi +++gtG++ l s+ ++ L+ T091456_1 3026 LPSQGIFFLCG-MWT---YICLPTNWIGTCTLVFLSPNINIAPGNqSLSVPLKTQVCQCR---AIQLIPLLTGLGIVTATGTGIASLsTSLSYYQTLS 3116 57888999998.589...99*************************655556666666777...************************99********* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHH.HHHHHHHHHHHHH.HHHHHH-XXXX.XXXXXX CS TLV_coat 431 aalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgiv.rdsiakLqerleq.rqrllednqlwfegllgl 524 + +q++++sI l+ +++sl v lQN RGLDlL++e+GGlC+ L E CCFy ++s iv + Lqe+ ++ rqrl+++ + +++ l T091456_1 3117 KDFSDSLQEITKSILTLQSQIDSLTAVTLQNHRGLDLLTAEKGGLCTFLGEDCCFYTNQSWIV*D-ATRCLQEKASEiRQRLSNSYTNLWSWATWL 3211 ************************************************************99774.347899987543888888888887776544 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 14.7 0.00054 4.4 42 124 .. 2926 3013 .. 2913 3017 .. 0.70 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00054 DUF1510 42 e.....eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenveka 124 +++++ +e+ e+++++ e +e ++++ +e eee +++ e++++ ++++ ++ +ee ++ +++e ++ev++ + +++ +++ T091456_1 2926 VavlhcQSHQKGKEKGEQQHKHMAEAEEMKDRKRQEVREEEIERQREKEKDRKSKRRRQREEETDRGSQKERDEEVKDRDRSSKEKTV 3013 1455545666777777777777778888888888888888888888888888888888888888886666666666666666665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1154 (0.0707715); expected 326.1 (0.02) Passed bias filter: 456 (0.0279652); expected 326.1 (0.02) Passed Vit filter: 132 (0.00809518); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.26u 0.46s 00:00:03.72 Elapsed: 00:00:00.91 # Mc/sec: 14571.37 // Query: T091456_2 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-14 54.3 0.0 1.8e-14 53.7 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.7 0.0 1.1e-18 1.8e-14 85 206 .. 1977 2098 .. 1963 2103 .. 0.89 Alignments for each domain: == domain 1 score: 53.7 bits; conditional E-value: 1.1e-18 Gag_p30 85 eafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaafle.rlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 +a+p p+wd ++ + s k +l glr ++p n + + +++qgkee+p+afle ea r+ytp pe+ e + + fi+qsa+dir T091456_2 1977 QAIPSMDPHWDLDSDHEDWSCKHLLTCVLEGLRRIIKKPMNYSMMSTITQGKEENPSAFLE*L-WEALRKYTPLSPESLEGQLILKDKFITQSATDIR 2073 6899999********9999999999**********************************9665.69******************************** PP Gag_p30 182 kklqrleglqeatlkdlvkeaekvy 206 +k+q+ e++l+ l++ v T091456_2 2074 RKFQKQALGPEKNLEALLNLVTLVL 2098 ****987777778877776665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.76 # Mc/sec: 17447.30 // Query: T091456_3 [L=4635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-12 46.6 0.0 5.9e-12 45.8 0.0 1.3 1 RNase_H RNase H 2.9e-08 33.8 0.0 5.9e-08 32.8 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.2 11.0 0.6 0.33 10.3 0.0 1.6 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.8 0.0 1.1e-15 5.9e-12 3 92 .. 2814 2902 .. 2812 2906 .. 0.88 Alignments for each domain: == domain 1 score: 45.8 bits; conditional E-value: 1.1e-15 SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSE CS RNase_H 3 avvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawktt 92 ++++Yt Gs++ ++g ++ag+++ ++++ s+pl++ ++++ aEL A++ aL +++++n+ytDSkY++ ++ + wk+++ +t+ T091456_3 2814 DLNLYTNGSSFVKNGIRRAGYTIVSDVTVLESKPLPPGTSAQLAELVALTRALVlG--KGKRINVYTDSKYAYVILHAHAAIWKEREFPTS 2902 5789*****************7777867788999*******************955..99**************88888888888777664 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.0 1.1e-11 5.9e-08 4 100 .. 2220 2311 .. 2218 2312 .. 0.94 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 1.1e-11 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P + + i+g+ i +llDtG +v+ + + +++++++Gi+g+ + + + ++ + f++ +l++pe+p +llGrd+L k g+ + T091456_3 2220 EPQVCLTIEGQEIDFLLDTGVAFSVLISCSGRLS----SRSVTIRGILGQPvTRDFFHLLSCNWETLLFSH--AFLVMPESPTPLLGRDILAKAGAII 2311 699999*********************9999999....************9899999**************..*******************998765 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.1 0.72 3.9e+03 90 105 .. 1284 1299 .. 1281 1301 .. 0.86 2 ? 10.3 0.0 6.1e-05 0.33 3 54 .. 1886 1937 .. 1884 1944 .. 0.90 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.72 Gag_p30 90 trpdwdyetaegresl 105 rp wdy ++ re++ T091456_3 1284 WRPRWDYRLSPSRETI 1299 59**********9975 PP == domain 2 score: 10.3 bits; conditional E-value: 6.1e-05 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtllt 54 pfs sdl + k++ fs+dp + +++ + t + +w d ll+ l+ T091456_3 1886 VPFSLSDLKQIKADLAKFSDDPDRYLDVLQGLGQTFDLAWRDVMLLLDQTLA 1937 69*****************************************999977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 513 (0.0314608); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.97u 0.37s 00:00:02.34 Elapsed: 00:00:00.84 # Mc/sec: 15785.65 // Query: T034735_1 [L=341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 1742.04 // Query: T034735_2 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.56 # Mc/sec: 1736.93 // Query: T034735_3 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-08 33.9 2.2 3.7e-08 33.2 2.2 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.2 2.2 2.3e-12 3.7e-08 3 73 .. 251 321 .. 249 333 .. 0.88 Alignments for each domain: == domain 1 score: 33.2 bits; conditional E-value: 2.3e-12 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalv 73 ap + +m s eqm t +a pptw q+k+l+ +a l t +++a + ++s+v++ + T034735_3 251 APPVRQTAQMNISVEQMETSKTPQATPPTWGQMKRLAHIAEENLRSQNKPLTTSNLMVAMMAVISLVSTDA 321 66677788999*********************************999988898888888888999999765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 1706.46 // Query: T281453_1 [L=1907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-53 181.6 0.3 2.7e-53 181.0 0.3 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 181.0 0.3 1.6e-57 2.7e-53 247 364 .. 1249 1368 .. 1235 1368 .. 0.96 Alignments for each domain: == domain 1 score: 181.0 bits; conditional E-value: 1.6e-57 S--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHH CS Transposase_22 247 ssrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrd 339 ++ ivr+t v++k+k+l+a+rekG+vt kGkPirlt dl aet +arrew+++++i+kek+fq ++yPakls++++Geik f dk++lrd T281453_1 1249 EPQDTIVRFTTVEMKEKVLRAAREKGQVTHKGKPIRLTVDLLAETQEARREWGPIFNIVKEKNFQSGISYPAKLSFVSEGEIKSFTDKQMLRD 1341 67889**************************************************************************************** PP HHTT-HHHHHHHTT..T-SSXSSXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqal 364 +++ rPal++llke ++er++ yq+l T281453_1 1342 FVTPRPALQELLKEavNMERNNWYQPL 1368 *************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 7906.67 // Query: T281453_2 [L=1907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-11 44.6 0.2 8.5e-11 41.7 0.2 2.0 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.7 0.2 5.2e-15 8.5e-11 125 218 .. 1643 1808 .. 1593 1812 .. 0.84 Alignments for each domain: == domain 1 score: 41.7 bits; conditional E-value: 5.2e-15 EEEEESB--ST-TTHHHHHHHHHHHHH..TT-T...............TEEECTTEEEEEESSHHH................................ CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnell..relrkra.........kgvtllrYaDDililskskee................................ 179 ++ k+g++qG++ SPllfn++++ l r +r+ ++v+l+++aDD++++ +++ T281453_2 1643 AFPLKTGTRQGFPFSPLLFNILLEVLAmaRAIRQGKeiksiqlgnEEVKLSLFADDMIVMGAAHQHgtcihm*qtctlctctlelkv**knlyiyiyi 1740 6899*******************98761155565559**************************9999******************************* PP .............HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEET CS RVT_1 180 .............lqelleaveewlkesglkinpeKtklvlf............sg....kseevkyL 218 +q+ll+ ++++ k sg+kin +K++++l+ + ++++kyL T281453_2 1741 yiyiymkenpivsAQNLLKLMSNFSKVSGYKINVHKSQAFLYiinrqtesqtvsELpftiATKRIKYL 1808 ****************************************9999887776665411455688888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.65 # Mc/sec: 8393.24 // Query: T281453_3 [L=1907] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-52 176.5 11.8 2.1e-51 174.8 11.8 1.7 1 Transposase_22 L1 transposable element 1.3e-06 28.5 0.0 2.5e-06 27.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.018 14.8 0.0 0.046 13.5 0.0 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.05 13.7 0.2 0.11 12.6 0.2 1.6 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.41 11.1 3.6 0.92 10.0 3.6 1.6 1 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 174.8 11.8 6.6e-55 2.1e-51 11 250 .. 1041 1252 .. 1034 1254 .. 0.91 Alignments for each domain: == domain 1 score: 174.8 bits; conditional E-value: 6.6e-55 XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............. CS Transposase_22 11 kqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiikekqentskqv 99 k nsk +++s+P +++sssP t e++++++df+el + ++++ +++el+e++++++ke + +k ++e + v T281453_3 1041 KLKNSKNQNASSPLEDRSSSPPT--EQSWMENDFDELTEVGFRRlviTNFSELREDVRTHCKEAKnLEKWLDEWLSRINS------------V 1119 5689*******************..******************966679**************87667777775544333............2 PP .....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTT.T CS Transposase_22 100 memnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkr.P 190 + ++++ lkt ++el +++ s++sr d++eervs +ed+i+ei+ + k ek++k++eqslq+i+d+v + P T281453_3 1120 EKTLNDVMKLKTMARELCDTCT------------------SFNSRFDQVEERVSVIEDQIDEIK*ED-KVIEKTVKRNEQSLQEIWDYV-K*P 1192 23345899*************9..................9**********************7754.78899***************9.999 PP EEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--E CS Transposase_22 191 nlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrh 250 nl l Gv+es+ e+++klen+l++ii+enfPnl+++an++iqei+rtP+r++s+r ++rh T281453_3 1193 NLHLTGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRTPQRYSSRRGTPRH 1252 ************************************************************ PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.0 7.6e-10 2.5e-06 4 87 .. 1405 1572 .. 1402 1658 .. 0.83 Alignments for each domain: == domain 1 score: 27.6 bits; conditional E-value: 7.6e-10 EESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE.................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF Exo_endo_phos 4 NvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl.................. 77 N+n k + ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + +k++ g+a+l++ + + + T281453_3 1405 NINLKCNGLNAPIKRHRLANWIKSQDPSVCCIQETHLTCKDAHRLKIkgWRKIYQANGKKKKAGIAILVSDKTEFKpteikrdkegimvkgsiq 1498 777777889999999*******************999988887777788666778888999999*99999999666678899999999999999 PP ..................................EEEEEE-SS..............................- CS ..................................xxxxxxxxx..............................x RF Exo_endo_phos 78 ..................................vivlGDfNa..............................r 87 i++GDfN+ r T281453_3 1499 qeeltilniyapktgaprfikqvltdlqrdldshTIIMGDFNTptvnirqinatecqqgypglelssatsrpnR 1572 99****************************************96666666666555555555555555555550 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 1.4e-05 0.046 2 46 .. 1503 1545 .. 1502 1578 .. 0.84 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.4e-05 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhpl 46 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + T281453_3 1503 TILNIYAPKTG-APRFIKQVLTDLQRDLDS-HTIIMGDFNTPTVN 1545 799*****999.888888888888888887.8********98765 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.2 3.5e-05 0.11 24 100 .. 1088 1164 .. 1066 1165 .. 0.88 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 3.5e-05 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 24 dkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++++ +++ ++ ++l++ l+e ++ N++ k+ +k k a el + + + +++++e++++ +e++++++ T281453_3 1088 FSELREDVRTHCKEAKNLEKWLDEWLSRINSVEKTLNDVMKLKTMARELCDTCTSFNSRFDQVEERVSVIEDQIDEI 1164 566667777788999**********************************************************9986 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 3.6 0.00028 0.92 3 73 .. 1088 1163 .. 1087 1190 .. 0.76 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00028 Syntaxin-6_N 3 FfevkeeV...qkslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpsk 73 F e +e+V +k++++le+ +++w +++ +++++ + +l+ +eL ++ s + +++ee v+++e + ++ T281453_3 1088 FSELREDVrthCKEAKNLEKWLDEWlSRINSVEKTlNDVMKLKTMARELCDTCTSFNSRFDQVEERVSVIEDQIDE 1163 56667777333578889999999**76999999999899******************************9986543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1907 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 8142.69 // Query: T358900_1 [L=4975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-12 45.5 5.4 1.5e-05 24.8 2.2 3.4 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.6 0.0 0.0083 1.4e+02 19 60 .. 2957 2998 .. 2930 3023 .. 0.40 2 ! 24.8 2.2 9.5e-10 1.5e-05 4 65 .. 3027 3088 .. 3025 3090 .. 0.95 3 ! 16.5 0.5 3.9e-07 0.0064 10 64 .. 3093 3147 .. 3090 3150 .. 0.78 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.0083 Pentapeptide_4 19 searlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsg 60 s+++l + ++++ ls+ +++ +ls ++ + l+ +s T358900_1 2957 SSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSS 2998 222222222222222222222222222222222222222222 PP == domain 2 score: 24.8 bits; conditional E-value: 9.5e-10 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 +++++ +c+ls +++s++ l ++++ +++ls+v+ + c+ls+v ++ + l+r+++s+c l++ T358900_1 3027 SSVTLSACCLSSMTLSACGLSSTTLFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSS 3088 6899******************************************************9986 PP == domain 3 score: 16.5 bits; conditional E-value: 3.9e-07 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 +c ls+v++s+++l + + + + ls++++ c ls+ ++ ++l+++++s++ l+ T358900_1 3093 ACGLSRVTLSACHLSSMTVSTCGLSSMTLFACGLSSMTLSACRLSNVTLSNFPLA 3147 5778888888888888888888888888888888888888888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.62u 0.34s 00:00:01.96 Elapsed: 00:00:00.70 # Mc/sec: 20332.33 // Query: T358900_2 [L=4975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.34s 00:00:01.92 Elapsed: 00:00:00.70 # Mc/sec: 20332.33 // Query: T358900_3 [L=4974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.32s 00:00:01.79 Elapsed: 00:00:00.66 # Mc/sec: 21560.26 // Query: T277138_1 [L=2166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 10327.60 // Query: T277138_2 [L=2166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.75 # Mc/sec: 8262.08 // Query: T277138_3 [L=2166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 9533.17 // Query: T012503_1 [L=3762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-05 24.1 2.6 2.4e-05 24.1 2.6 2.8 3 zf-CCHC Zinc knuckle 0.00072 19.7 0.0 0.002 18.2 0.0 1.8 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.3 0.43 3.5e+03 2 7 .. 313 318 .. 312 318 .. 0.90 2 ! 24.1 2.6 2.9e-09 2.4e-05 2 18 .] 848 864 .. 847 864 .. 0.94 3 ? -2.7 0.0 0.84 6.8e+03 13 17 .. 2994 2998 .. 2993 2999 .. 0.83 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.43 CTSSSS CS zf-CCHC 2 kCynCG 7 +C+ CG T012503_1 313 TCFICG 318 8****9 PP == domain 2 score: 24.1 bits; conditional E-value: 2.9e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C + GH+a++Cp+ T012503_1 848 ACYTCRKSGHWAKECPQ 864 7***************7 PP == domain 3 score: -2.7 bits; conditional E-value: 0.84 TTTST CS zf-CCHC 13 ardCp 17 +rdC+ T012503_1 2994 SRDCT 2998 9***8 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.0 2.4e-07 0.002 6 89 .. 936 1014 .. 931 1014 .. 0.85 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 2.4e-07 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEE.EEEETTEEEEE..EEEESTTSSSEEE- CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskai.evllieekfrgevsplilpelpvnllG 89 l+++ ++gk+i +l+ A+++ ++ + P + a+ ++ Gi g+ ++ ++ + +l + f++ s+l++p++pv+llG T012503_1 936 LVTLTVEGKPIPFLINMEATHSTLPSFQGPVS----LASITVVGIDGQASKPLKTPQpSCQLRQYSFKH--SFLVIPTCPVPLLG 1014 7999****************************....************966666655045555556666..************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.61u 0.40s 00:00:02.01 Elapsed: 00:00:00.80 # Mc/sec: 13453.05 // Query: T012503_2 [L=3762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0082 15.5 0.0 0.014 14.8 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 8.3e-07 0.014 138 181 .. 735 778 .. 728 778 .. 0.95 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 8.3e-07 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ l + r++t dp++ + + + + fi+qsa+di+ T012503_2 735 KNPAQFMTCLAATLRHFTALDPKKSKGRLILKIHFITQSAPDIK 778 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.62 # Mc/sec: 17358.78 // Query: T012503_3 [L=3761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.78 # Mc/sec: 13794.34 // Query: T316686_1 [L=1692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.5 6.4 5.5 6.9 6.4 1.1 1 PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus Domain annotation for each model (and alignments): >> PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 6.4 0.00033 5.5 51 87 .. 415 451 .. 403 477 .. 0.77 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00033 PRP9_N 51 sdisknkiykskkskrsrkqillQqhEinlFledykk 87 ++ +++iyk+++ +r+++q Qq+ ++l+ ++ + T316686_1 415 AQKPSEDIYKNRRRRRQQQQQQQQQQQLDLLFHQRIQ 451 477899***********************98876543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 739 (0.0453207); expected 326.1 (0.02) Passed bias filter: 407 (0.0249601); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.66 # Mc/sec: 7334.13 // Query: T316686_2 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 7442.56 // Query: T316686_3 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 8199.43 // Query: T008117_1 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 4732.92 // Query: T008117_2 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 4282.16 // Query: T008117_3 [L=942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 4277.62 // Query: T381755_1 [L=547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-06 26.3 0.1 1.8e-05 25.3 0.1 1.4 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 0.1 1.1e-09 1.8e-05 34 99 .. 427 491 .. 413 499 .. 0.90 Alignments for each domain: == domain 1 score: 25.3 bits; conditional E-value: 1.1e-09 VCX_VCY 34 kttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 +++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381755_1 427 QIPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 491 579***********************************************99987.7777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 2745.39 // Query: T381755_2 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.63 # Mc/sec: 2479.39 // Query: T381755_3 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 2479.39 // Query: T288183_1 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 4502.29 // Query: T288183_2 [L=960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-40 137.6 1.0 5.7e-40 137.1 1.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.1 1.0 3.5e-44 5.7e-40 36 222 .] 531 747 .. 526 747 .. 0.94 Alignments for each domain: == domain 1 score: 137.1 bits; conditional E-value: 3.5e-44 ..-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB CS RVT_1 36 kllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkg 131 k+ ++q+gf pg + + ++ ++++++++ k k+++++++D++kaFd+++ ++ l++l++++++ + +++i++++ ++++++ +ng++ e ++ k+g T288183_2 531 KINLDDQVGFIPGMQSWFNIrksiNVIQHINRTKDKNHMIISIDVEKAFDKIQQRFMLKTLNKLRIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTG 630 566789*******9999999*9999999999999999*****************************************************99******** PP --ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE............... CS RVT_1 132 lpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg 210 ++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg++in +K++++l+ s+ T288183_2 631 TRQGCPLSPLLFNIMLEVLTRAIRQEKeikdiqlgkEEVKLSLFADDMIVYLENlIVSAQNLLKLISNFSKVSGYTINVQKSQAFLYtnnr*tesqimSE 730 *************************99***************************8888***************************999999988777611 PP ......ESSEEETTEEE CS RVT_1 211 .....kseevkyLGvtl 222 s+++kyLG++l T288183_2 731 vpftiASKRIKYLGIQL 747 55678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 3980.29 // Query: T288183_3 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 4425.06 // Query: T263456_1 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-30 103.8 15.7 1.2e-29 103.2 15.7 1.2 1 Transposase_22 L1 transposable element 0.00062 19.8 4.6 0.0012 19.0 4.6 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0032 17.9 4.9 0.0032 17.9 4.9 1.8 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.2 15.7 2.2e-33 1.2e-29 1 171 [. 1506 1642 .. 1506 1651 .. 0.93 Alignments for each domain: == domain 1 score: 103.2 bits; conditional E-value: 2.2e-33 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekeentekqlkiikekq 92 +Gkk+ rk++nsk +++s+P+ke+sssPa e+ ++++df+elr+e++++++y+elke++++++ke++ ++k +ee + + ek T263456_1 1506 MGKKQ---SRKTGNSKNQSASPPPKERSSSPAM--EQRWMENDFDELREEGFRRSNYSELKEEVRTHGKEVKnFEKRLEEWLTRMTN--AEKS 1591 79999...9************************..************************************99*******6666655..2332 PP ............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerek 171 ++l+elkt ++el++e+ slssr d+leervs +ed++ e++re k+r k T263456_1 1592 L----------NNLMELKTTTQELRDECT------------------SLSSRFDQLEERVSVMEDQMIEMKREEKFRVK 1642 2..........37****************..................*****************************988 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 4.6 2.1e-07 0.0012 5 99 .. 1538 1632 .. 1535 1635 .. 0.96 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 2.1e-07 HHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 5 klirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 +++ +++++++e +R +++++ +e+ ++ ++ +++lee ++ ++ k+ ++++ k ++el++e +l+ ++++le++++ +e+++ + T263456_1 1538 RWMENDFDELREEGFRRSNYSELKEEVRTHGKEVKNFEKRLEEWLTRMTNAEKSLNNLMELKTTTQELRDECTSLSSRFDQLEERVSVMEDQMIE 1632 68899************************************************************************************999876 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 4.9 5.8e-07 0.0032 3 71 .. 1557 1630 .. 1556 1650 .. 0.79 2 ? -3.5 0.1 2.7 1.5e+04 6 25 .. 2335 2354 .. 2334 2367 .. 0.86 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 5.8e-07 Syntaxin-6_N 3 FfevkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknp 71 + e keeV+ k++++ e+ +++w +++ + ++s ++ el+ t++eLr ++ s++ ++Lee v+++e + T263456_1 1557 YSELKEEVRthgKEVKNFEKRLEEWlTRMTNAEKSlNNLMELKTTTQELRDECTSLSSRFDQLEERVSVMEDQM 1630 5677788863346899999999***6588888888889*****************************9997743 PP == domain 2 score: -3.5 bits; conditional E-value: 2.7 Syntaxin-6_N 6 vkeeVqkslnkleslyrrwe 25 ++++ +++ln+++++ r+w T263456_1 2335 IQDQTDSQLNSTRGTRRSWY 2354 57888999**********94 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 708 (0.0434196); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.71 # Mc/sec: 12716.59 // Query: T263456_2 [L=3156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-27 93.9 0.1 1.4e-26 93.3 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.3 0.1 8.6e-31 1.4e-26 81 222 .] 2470 2637 .. 2465 2637 .. 0.93 Alignments for each domain: == domain 1 score: 93.3 bits; conditional E-value: 8.6e-31 CCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTE CS RVT_1 81 dsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDD 169 ++++ ++ l++l++++++ + +++i++++ + ++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r+++ ++v+l+++aDD T263456_2 2470 FKIQQPFMLKTLNKVGIDGMYLKIIRAIYDKSTANIILNGHKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEMeikgiqlgkEEVKLSLFADD 2567 78999************************************99**********************************9******************** PP EEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 170 ililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++++ ++ ++q+ + ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T263456_2 2568 MIVYLENpIVSAQNRFKLISNFSKISGYKINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2637 *******6677***************************99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.29s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 12368.19 // Query: T263456_3 [L=3155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-103 346.1 7.5 3.8e-103 345.0 7.5 1.5 1 Transposase_22 L1 transposable element 1.1e-10 41.3 0.3 2.5e-10 40.1 0.3 1.6 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 7e-10 39.0 0.0 1.4e-09 38.1 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.7e-08 33.5 0.4 8.4e-08 32.0 0.4 1.9 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 3e-08 33.0 0.7 8e-08 31.6 0.7 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 345.0 7.5 1.2e-106 3.8e-103 171 368 .] 1641 1840 .. 1636 1840 .. 0.99 Alignments for each domain: == domain 1 score: 345.0 bits; conditional E-value: 1.2e-106 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHH CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdk 263 kr+k++eqslq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enf nl+++an++iqei+r P+r++s+ra++rh+ vr++kv++k+k T263456_3 1641 KRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFHNLARQANIQIQEIQRMPQRYSSRRATARHLTVRFSKVEMKEK 1733 9******************************************************************************************** PP HHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 264 ilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..k 354 +l+a++ekGrvt k kPirltadlsaetl+arrew+++++ilk+k+fqPr++yPakls++++Geik f dk++lrd+ +trPalk+llke + T263456_3 1734 MLRAAKEKGRVTHKRKPIRLTADLSAETLQARREWGPIFNILKDKNFQPRISYPAKLSFTSEGEIKCFTDKQMLRDFATTRPALKELLKEalN 1826 ********************************************************************************************* PP -SSXSSXXXXXXXX CS Transposase_22 355 nerkdryqaleqar 368 + r++ryq+l++++ T263456_3 1827 MGRNNRYQPLQKHA 1840 ***********996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.3 7.5e-14 2.5e-10 1 83 [. 2381 2472 .. 2381 2475 .. 0.91 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 7.5e-14 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCS CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsv 83 ipK+g ++++Rpisl++++ k+lnk++a + ++++kll+++q+gf pg + + ++ ++++++++ ++k+++++++D + aF + T263456_3 2381 IPKPGrdttkKENFRPISLMNINAKILNKILAn*iQ---QHIKKLLHHDQVGFIPGMQAWFNIcksvNVIQHINRTNNKNHVIISIDAEEAFSKF 2472 899999999999******************964434...688888***************999***99999999999999************875 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.0 4.3e-13 1.4e-09 1 113 [] 1875 2094 .. 1875 2094 .. 0.87 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 4.3e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++++ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T263456_3 1875 LTLNVNG----LNAPIKRHRLANWIKSQEPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkevhyimv 1964 699****....7778899*******************9998887776666886677788899999***********7777888*********** PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T263456_3 1965 kgsiqqeeltilniyapntgaprfikqvlrdlqrdldfhTIIMGDFNTplstldrstrqkgnkviqelnsalhqadlidvygtlrpksteytff 2058 ************************************************9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l ++ + + + SDH T263456_3 2059 saphhtysKIDHIVGSKALLSKHKRTEIITNClSDH 2094 9888888888****9995555544444444337998 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 0.4 2.6e-11 8.4e-08 2 118 .. 1974 2097 .. 1973 2098 .. 0.81 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 2.6e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+ ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T263456_3 1974 TILNIYAPNTG-APRFIKQVLRDLQRDLD-FHTIIMGDFNTPLSTLDRSTRQKgNKVIQELNSALHQADLIDVygtLRPKSTeYTFFSAPHh 2063 7999***9999.66777777777777776.49****************888889999************99666764444444666665555 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T263456_3 2064 tYSKIDHIVGSKALLSKhkRTEIITNCLSDHSAI 2097 67*************9999777779******998 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.6 0.7 2.5e-11 8e-08 1 19 [] 3106 3124 .. 3106 3124 .. 0.98 Alignments for each domain: == domain 1 score: 31.6 bits; conditional E-value: 2.5e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS+ sQ T263456_3 3106 SFVGTWMKLETIILSKLSQ 3124 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:00.83 # Mc/sec: 10874.60 // Query: T351117_1 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 3771.09 // Query: T351117_2 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2 8.4 6.1 4 7.4 0.6 2.6 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.6 0.00025 4 17 30 .. 363 376 .. 360 377 .. 0.94 2 ? 3.0 0.6 0.0058 94 17 30 .. 700 713 .. 698 714 .. 0.94 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00025 Toxin_18 17 CSGAcSaaFgyCLp 30 CSG Sa ++CLp T351117_2 363 CSGMISAHCNLCLP 376 *************9 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0058 Toxin_18 17 CSGAcSaaFgyCLp 30 C G Sa ++CLp T351117_2 700 CRGTISAHCNLCLP 713 99***********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.77 # Mc/sec: 3232.37 // Query: T351117_3 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.58 10.5 4.1 1.3 9.4 4.1 1.5 1 RCDG1 Renal cancer differentiation gene 1 protein Domain annotation for each model (and alignments): >> RCDG1 Renal cancer differentiation gene 1 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 4.1 7.8e-05 1.3 8 32 .. 182 206 .. 177 225 .. 0.80 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 7.8e-05 RCDG1 8 PPpPPPssPssraaasssspelPvs 32 P PP ss s +a+ +ssp++Pvs T351117_3 182 WPVPPCSSQSHPDASLASSPSVPVS 206 589999******************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4696.08 // Query: T229515_1 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3 6.5 10.4 2.6 6.7 9.3 1.4 1 DMP1 Dentin matrix protein 1 (DMP1) Domain annotation for each model (and alignments): >> DMP1 Dentin matrix protein 1 (DMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 9.3 0.00016 2.6 111 218 .. 123 232 .. 85 250 .. 0.79 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00016 DMP1 111 DDtfgdedngpgpeerqggnsrlkseeDsadttqssEdsasq..gedsaqdttseSrdldeedevssrpesgdstkdseSeEhwvgggsegdsshgdgse 208 +Dt + n+ ++++ +++++ ++ ++ ad +++Ed a+ ed+a+ ++se +ev + + ++++++ +E+ v+g +++d hg ++e T229515_1 123 EDTVHNITNEDASHDITNEDAVHGIANEAADKGNANEDAAQGiaNEDAAHGIASEDAAQGIANEVAAQGIANEDAAQGIANEDAVQGIANEDAAHGIANE 222 6899999999999999988888899999999999999987541146677777766666666666777777789999999999999999999999999999 PP DMP1 209 fddegmqsdD 218 + +g ++D T229515_1 223 DAAHGIANED 232 9999999999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4755.46 // Query: T229515_2 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 4755.46 // Query: T229515_3 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 4500.70 // Query: T362832_1 [L=3811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 19468.97 // Query: T362832_2 [L=3811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.54 # Mc/sec: 20190.04 // Query: T362832_3 [L=3810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 19122.39 // Query: T211937_1 [L=1360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7940.26 // Query: T211937_2 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 8099.72 // Query: T211937_3 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 7623.27 // Query: T229017_1 [L=2703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-25 89.8 0.1 1.9e-25 88.9 0.1 1.5 1 RVP Retroviral aspartyl protease 8e-16 57.8 0.0 1.3e-15 57.1 0.0 1.3 1 dUTPase dUTPase 1.1e-14 53.9 0.2 1.9e-14 53.2 0.2 1.4 1 G-patch G-patch domain Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.9 0.1 3.5e-29 1.9e-25 2 89 .. 957 1043 .. 956 1055 .. 0.96 Alignments for each domain: == domain 1 score: 88.9 bits; conditional E-value: 3.5e-29 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllG 89 e+rP++k +i+gk++e+l+DtGAd+++i+ +++P+nwp++ka + l Gig+a+e++qs++i+++l+ ++++++v+p+i++ +p+nl+G T229017_1 957 ENRPVCKAIIQGKQFEGLVDTGADVSIIALNQWPKNWPKQKAVTGLVGIGTASEVYQSTEILHCLGPDNQESTVQPMITS-IPLNLWG 1043 89******************************************************************************.******8 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.1 0.0 2.4e-19 1.3e-15 5 106 .. 827 927 .. 823 942 .. 0.90 Alignments for each domain: == domain 1 score: 57.1 bits; conditional E-value: 2.4e-19 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 + ++++ sA Dl+ + + + p + + +pt+++ +lp+g+ +lil+RS+l++kg+ +++ v+dsdy+Ge+++v+ ++ + + gdR AqL++ + T229017_1 827 QLSPATSSSAAVDLCTIQAVSLLPgEPPQKIPTGVYGPLPEGTVGLILGRSSLNLKGVQIHTSVVDSDYKGEIQLVIS--SSIPWSASPGDRSAQLLLLP 924 57899*******************7789*******************************************7777775..56689************998 PP BEC CS dUTPase 104 ilt 106 + + T229017_1 925 YIK 927 765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.2 0.2 3.5e-18 1.9e-14 2 44 .. 1062 1104 .. 1061 1105 .. 0.95 Alignments for each domain: == domain 1 score: 53.2 bits; conditional E-value: 3.5e-18 G-patch 2 sniGvkmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 s++ +k++ kmG+ +G+GLGk+e+Gi+ P eaki+++r+G+G+ T229017_1 1062 SPTSQKIMTKMGYIPGKGLGKNEDGIKIPFEAKINQKREGIGY 1104 56789*************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 13566.36 // Query: T229017_2 [L=2703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-119 394.0 2.7 9.5e-119 393.0 2.7 1.5 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprote 1.1e-78 263.7 0.1 1.1e-78 263.7 0.1 2.0 3 Gag_p24 gag gene protein p24 (core nucleocapsid protei 4.1e-30 103.3 0.5 1e-29 102.1 0.5 1.7 1 Gag_p10 Retroviral GAG p10 protein 1e-29 101.9 0.2 1e-29 101.9 0.2 2.8 3 RVT_thumb Reverse transcriptase thumb domain 6.3e-29 100.5 0.0 1.5e-28 99.2 0.0 1.6 1 rve Integrase core domain 2.7e-25 89.3 3.8 5e-25 88.4 3.8 1.4 1 GP41 Retroviral envelope protein 1.1e-21 77.4 0.1 3.5e-21 75.8 0.0 2.0 1 RNase_H RNase H 2.3e-21 75.1 6.4 2.3e-21 75.1 6.4 2.5 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 5.7e-17 61.2 2.4 1.7e-16 59.7 2.4 1.9 1 Integrase_Zn Integrase Zinc binding domain 2.6e-06 26.5 1.5 6e-06 25.3 1.5 1.6 1 IN_DBD_C Integrase DNA binding domain 2.7e-06 27.1 2.5 2.7e-06 27.1 2.5 2.9 3 zf-CCHC Zinc knuckle 0.0046 17.0 0.0 0.0097 16.0 0.0 1.5 1 DDE_Tnp_IS240 DDE domain ------ inclusion threshold ------ 0.014 15.2 0.9 0.037 13.8 0.3 2.1 2 zf-CCHC_6 Zinc knuckle 0.057 13.0 1.0 0.15 11.7 1.0 1.7 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 393.0 2.7 8.2e-122 9.5e-119 1 169 [] 1968 2136 .. 1968 2136 .. 1.00 Alignments for each domain: == domain 1 score: 393.0 bits; conditional E-value: 8.2e-122 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 +vtwmdnpievyvnds wvpgp+ddrcpakpeeegmminisigyryppiclg+apgclmpavqnwlvevp+vspisrftyhmvsgmslrprvnyl T229017_2 1968 PVTWMDNPIEVYVNDSEWVPGPTDDRCPAKPEEEGMMINISIGYRYPPICLGTAPGCLMPAVQNWLVEVPIVSPISRFTYHMVSGMSLRPRVNYL 2062 69********************************************************************************************* PP HERV-K_env_2 96 qdfsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqscp 169 qdf yqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqscp T229017_2 2063 QDFPYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP 2136 *************************************************************************9 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 263.7 0.1 9.1e-82 1.1e-78 1 205 [] 483 697 .. 483 697 .. 0.98 2 ? -3.3 0.1 5.1 6e+03 17 56 .. 1610 1648 .. 1598 1719 .. 0.68 3 ? -3.3 0.0 5.2 6.1e+03 20 61 .. 1873 1915 .. 1869 1920 .. 0.80 Alignments for each domain: == domain 1 score: 263.7 bits; conditional E-value: 9.1e-82 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++v+qygp+sp++++l+d++a+++ +p+d+e+l+++ ++s++l+ +++w+++++e+ +r+nraa +p++i++d+llg+gq ++++q++ T229017_2 483 IKMLKDMKEGVKQYGPNSPYMRTLLDSIAYGHrlIPYDWEILAKSslSPSQFLQfKTWWIDGVQEQ--VRRNRAAnPPVNIDADQLLGIGQnwSTISQQA 580 79******************************************9889******************..99999999***************999****** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knstl.ed 187 lmqn e++eqvr+++l+a+eki+++gs ++s++++rQG+kEpy+dfvaRl+++++k++adeka +v+v+ +ayeNANpeCq+++kpl+ ++s++ ++ T229017_2 581 LMQN-EAIEQVRAICLRAWEKIQDPGSACPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKgkvpAGSDViSE 679 ****.***********************************************************************************999999**99** PP Gag_p24 188 mlraCqgvggavhkarvl 205 +++aC+g+gga+hka+++ T229017_2 680 YVKACDGIGGAMHKAMLM 697 ****************98 PP == domain 2 score: -3.3 bits; conditional E-value: 5.1 Gag_p24 17 sspeviqlidalaeqalpkdlekllarvgssqlaaqlwke 56 s++v+q + + + + +++ ++l+++ + l++++ k T229017_2 1610 DSAYVVQATRDVETALIKYSMDDQLNQLFN-LLQQTVRKR 1648 689999999999999999999999998765.445444444 PP == domain 3 score: -3.3 bits; conditional E-value: 5.2 Gag_p24 20 eviqlidalaeqalpkdlekllar.vgssqlaaqlwkeeleee 61 ++++ ++ +q ++ ++l+ + + ++++ +wk++ + T229017_2 1873 YTLNFLNIYRNQTTTSAEQHLTGKkNSPHEGKLIWWKDNKNKT 1915 7778888888999999999999774667899999999987765 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.1 0.5 8.6e-33 1e-29 3 84 .] 184 264 .. 182 264 .. 0.97 Alignments for each domain: == domain 1 score: 102.1 bits; conditional E-value: 8.6e-33 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Llk+ G+kvs+++l+k++q++e++cPWFpe+Gtldl++Wk++gkelk qa ++g+ ipl+v++ w++i+++L+ T229017_2 184 ASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIGKELK-QAGRKGNIIPLTVWNDWAIIKAALE 264 679*****************************************************.**********************995 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.0 0.65 7.6e+02 31 46 .. 199 214 .. 194 215 .. 0.88 2 ! 101.9 0.2 8.6e-33 1e-29 3 65 .. 1347 1409 .. 1345 1410 .. 0.97 3 ? -3.2 0.1 5.8 6.8e+03 37 46 .. 1633 1642 .. 1631 1644 .. 0.86 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.65 TT---HHHHHT...TT CS RVT_thumb 31 lgittaeLkpLFniLr 46 +++ t++L +LF+i++ T229017_2 199 VKVSTKNLIKLFQIIE 214 6899*********986 PP == domain 2 score: 101.9 bits; conditional E-value: 8.6e-33 -B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 3 klqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 k+++r+d+lktLNDfQkLlgdINWirp+lgi+t+ +++LF+iLrGdsdl+s+r LT+eA++++ T229017_2 1347 KIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRILTPEATKEI 1409 89**********************************************************997 PP == domain 3 score: -3.2 bits; conditional E-value: 5.8 HHHHT...TT CS RVT_thumb 37 eLkpLFniLr 46 +L++LFn+L+ T229017_2 1633 QLNQLFNLLQ 1642 89******97 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 99.2 0.0 1.3e-31 1.5e-28 4 118 .. 1739 1848 .. 1737 1849 .. 0.96 Alignments for each domain: == domain 1 score: 99.2 bits; conditional E-value: 1.3e-31 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dvt+++ + g+ +y++v +d++s++i+a + + e ++s+v + l +a g pe++ +Dng+ y+skaf++fl++++i++++ p++ T229017_2 1739 PNALWQMDVTHVP--SFGRLSYVHVTVDTYSHFIWATCQTGE-STSHVKKHLLSCFAVMGV--PEKIKTDNGPGYCSKAFQKFLSQWKISHTTGIPYN 1831 9************..56777**********************.**********9***9999..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q +++vEr+nrtlk++ T229017_2 1832 SQGQAIVERTNRTLKTQ 1848 ***************86 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.4 3.8 4.3e-28 5e-25 1 200 [. 2339 2535 .. 2339 2536 .. 0.84 Alignments for each domain: == domain 1 score: 88.4 bits; conditional E-value: 4.3e-28 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHH CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiW 97 va v+l +vq+ ++vn+ +kn ++ + Q id+kl +++n l + v+ +G+ ++sl+++ +l+C n C+T+ yn+se W+ v+ hl+g T229017_2 2339 VAGVALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQINDLRQTVIWMGDRLMSLEHRFQLQCDWNTSDFCITPQIYNESEhHWDMVRRHLQG-- 2434 6789*******************************************************************************************9.. PP HXHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XX.X...... CS GP41 98 nntevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqv.raevqll 194 + ++ ld+skl+++i ++++++ + ++ + + ++a lan ++ Wv+ i t ii+++ ++v l +lll+ + l ++ ++ ra + + T229017_2 2435 REDNLTLDISKLKEQIFEASKAHLNLVPGTEAIAGVADGLANLNPV-TWVKTIGST-TIINLI-LILVCLFCLLLVCRCTQQLRRDSDHReRAMMTMA 2529 58899********************************999876555.8***76544.455544.4556666666664445555555554314555555 PP .XXXXX CS GP41 195 llkkkk 200 +l k+k T229017_2 2530 VLSKRK 2535 666655 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.8 0.0 3e-24 3.5e-21 2 141 .. 1555 1681 .. 1554 1683 .. 0.85 Alignments for each domain: == domain 1 score: 75.8 bits; conditional E-value: 3e-24 .SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHH.HHTTSSSETTSSBH CS RNase_H 2 kavvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrw.kknawkttseqkpv 98 +a++v+tDGs++ g+a+++ +ke r i++p++ +++raEL Avi++L++ d+ +ni++DS Yvv+ +t++v+++ +k +++++ +q + T229017_2 1555 NALTVFTDGSSN-----GKAAYTGPKE--RVIKTPYQ---SAQRAELVAVITVLQD--FDQPINIISDSAYVVQ-ATRDVETAlIKYSMDDQLNQ--L 1637 689*******88.....9****99988..99999985...****************..999*************.88888886455666556666..6 PP TTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 99 knkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 n l++++ ++ ++++h+++H++ +k Ne+aD l+++a T229017_2 1638 FN-LLQQTV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 1681 77.666666..3446779**********98888789*******9987 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 1.7 1 1.2e+03 3 18 .. 715 730 .. 714 732 .. 0.94 2 ! 75.1 6.4 2e-24 2.3e-21 1 36 [] 749 784 .. 749 784 .. 0.98 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 1 -B-TTT-SSBS-TTT- CS zf-CCHC_5 3 glCpRCkkgkHwardC 18 g C C++ H +++C T229017_2 715 GKCYNCGQIGHLKKNC 730 78*************9 PP == domain 2 score: 75.1 bits; conditional E-value: 2e-24 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 pp+lCpRCkkgkHwa++C+skfdknG+pLs+ne+r+ T229017_2 749 PPDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRG 784 8*********************************96 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.7 2.4 1.5e-19 1.7e-16 1 38 [] 1685 1722 .. 1685 1722 .. 0.98 Alignments for each domain: == domain 1 score: 59.7 bits; conditional E-value: 1.5e-19 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCqq 38 A+e+H+l+H+Na++L++kF +t++qA++IVq+C +Cq+ T229017_2 1685 AQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQV 1722 9***********************************96 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 1.5 5.2e-09 6e-06 7 48 .. 1908 1948 .. 1904 1950 .. 0.91 Alignments for each domain: == domain 1 score: 25.3 bits; conditional E-value: 5.2e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T229017_2 1908 WKDNKNKTWEI-GKVITWGRGFACVSPGENQLPVWIPTRHLK 1948 99999999983.69*************************998 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 2.5 2.3e-09 2.7e-06 1 17 [. 715 731 .. 715 732 .. 0.95 2 ? 0.8 1.3 0.46 5.3e+02 3 17 .. 753 767 .. 751 768 .. 0.80 3 ? -2.9 0.4 7 8.2e+03 2 6 .. 2257 2261 .. 2256 2262 .. 0.85 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 2.3e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG++GH++++Cp T229017_2 715 GKCYNCGQIGHLKKNCP 731 59**************9 PP == domain 2 score: 0.8 bits; conditional E-value: 0.46 TSSSSSSSSTTTTST CS zf-CCHC 3 CynCGepGHiardCp 17 C +C + H+a++C T229017_2 753 CPRCKKGKHWASQCR 767 66777777******7 PP == domain 3 score: -2.9 bits; conditional E-value: 7 CTSSS CS zf-CCHC 2 kCynC 6 +C nC T229017_2 2257 TCENC 2261 8**** PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 8.3e-06 0.0097 3 114 .. 1742 1853 .. 1740 1874 .. 0.84 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 8.3e-06 DDE_Tnp_IS240 3 swrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkyl 95 w++D T v G+ +Y+ vD + + + + t +k+ l ++ + pe+i tD + y +a++++ + + + T229017_2 1742 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVM-GVPEKIKTDNGPGYcSKAFQKFLSQWKISHTTGIPYNSQG 1834 5****************************************************.*********9999945799999996544443333333444 PP DDE_Tnp_IS240 96 nnriEsdhrtlKkrlrptr 114 + ++E+ +rtlK +l +++ T229017_2 1835 QAIVERTNRTLKTQLVKQK 1853 6789********9986544 PP >> zf-CCHC_6 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.3 3.2e-05 0.037 3 28 .. 716 739 .. 715 748 .. 0.82 2 ? -3.8 0.0 9.9 1.2e+04 16 22 .. 1991 1997 .. 1990 2002 .. 0.79 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 3.2e-05 zf-CCHC_6 3 KCknCGAFGHtarskrCPmKrwkgal 28 KC nCG +GH + k CP+ ++++ T229017_2 716 KCYNCGQIGHLK--KNCPVLNKQNIT 739 9***********..88*987766655 PP == domain 2 score: -3.8 bits; conditional E-value: 9.9 zf-CCHC_6 16 skrCPmK 22 + rCP K T229017_2 1991 DDRCPAK 1997 679**99 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 1.0 0.00013 0.15 33 48 .. 716 731 .. 713 732 .. 0.93 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00013 zf-CCHC_4 33 fCfiCgllGHsdkeCp 48 C++Cg +GH +k+Cp T229017_2 716 KCYNCGQIGHLKKNCP 731 6**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 750 (0.0459953); expected 326.1 (0.02) Passed bias filter: 571 (0.0350178); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.55 # Mc/sec: 14059.68 // Query: T229017_3 [L=2703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-34 118.4 0.0 5.5e-34 117.5 0.0 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 117.5 0.0 3.4e-38 5.5e-34 1 222 [] 1169 1338 .. 1169 1338 .. 0.94 Alignments for each domain: == domain 1 score: 117.5 bits; conditional E-value: 3.4e-38 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--.EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkak.lllklDlkkaFdsvpleellrkltafkv 97 i+Kk+ g++R++ +d++a+n+li+ + + qpg++++ + +k l+ +Dlk++F+++pl+e++ +++af++ T229017_3 1169 IQKKS-GKWRML----TDLRAVNALIQP---------MGPLQPGLPSPAII--------------PK-D*PLIIIDLKDCFFTIPLAEQDCEKFAFTI 1237 89**9.*****7....7***********.........***********333..............45.455677************************ PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 p +n++e+ +r+++k+lpqG+ +SP++++ f+ ++l+++r++++++++++Y+DDil+++++k++l +++ +++ ++++g T229017_3 1238 P------------------AINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAG 1317 *..................458889************************************************************************* PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 l i+ +K++ ++++yLG+++ T229017_3 1318 LAIASDKIQTS------TPFHYLGMQI 1338 ***********......8******986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 14590.23 // Query: T062664_1 [L=5514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.56 # Mc/sec: 28168.96 // Query: T062664_2 [L=5514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 27674.77 // Query: T062664_3 [L=5514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.57 # Mc/sec: 27197.61 // Query: T364417_1 [L=5834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.35s 00:00:01.79 Elapsed: 00:00:00.60 # Mc/sec: 27816.80 // Query: T364417_2 [L=5833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.56 # Mc/sec: 29798.61 // Query: T364417_3 [L=5833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.005 16.3 0.6 0.015 14.8 0.6 1.9 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.6 9.1e-07 0.015 3 18 .. 4003 4018 .. 4001 4018 .. 0.95 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 9.1e-07 DUF1725 3 agKWMELEnIILSEis 18 a++WMEL I+LSEis T364417_3 4003 ATTWMELQVIMLSEIS 4018 89*************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.57 # Mc/sec: 28771.07 // Query: T095950_1 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-10 39.4 0.6 7.6e-10 38.6 0.6 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.074 13.2 0.0 0.11 12.7 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.078 12.7 0.0 3.7 7.4 0.0 2.2 2 Flg_hook Flagellar hook-length control protein FliK Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.6 0.6 1.4e-13 7.6e-10 2 118 .. 136 258 .. 135 259 .. 0.85 Alignments for each domain: == domain 1 score: 38.6 bits; conditional E-value: 1.4e-13 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll....nllkeg.ptfesengss 89 + +++Y p++ +l+ +++ l++l ++l+s ++ii+GDfN + g +++++ ++ e+L + l++ +l + + ++ + f ++++ s T095950_1 136 TTFNIYAPNTG-TLRFIKQVLRDLERDLDS-HTIIVGDFNTPLSILGRSTRQKiNKDIEDLNEALDQINLIDFyrplHPKSTEyTFFLPHSTYS 227 6799***9999.999999999999999997.8****************888879999999999999999985566644433444666788889* PP Exo_endo_phos_2 90 iiDltltsdnlaks..leleeedlgSDHrpi 118 iD + +++l+ + ++ ++++SDH++i T095950_1 228 KIDHSMGNKTLLSKfkRREIITNSLSDHSAI 258 ***************9888889******998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 1.9e-05 0.11 77 113 .] 123 255 .. 50 255 .. 0.71 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.9e-05 E..........................................EEEEEE-SS............................................ CS x..........................................xxxxxxxxx............................................ RF Exo_endo_phos 77 l..........................................vivlGDfNa............................................ 86 i++GDfN+ T095950_1 123 YimvkgsmqqeelttfniyapntgtlrfikqvlrdlerdldshTIIVGDFNTplsilgrstrqkinkdiedlnealdqinlidfyrplhpksteyt 218 0444444444455555555555555555555555556666666*********99999999999999999999998888888888888888888888 PP .........-BEEEEEEH.HHHTTEEEEEEECCHSSB CS .........xxxxxxxxx.xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 87 .........rlDrilask.elatersgvldeplaSDH 113 +D+ + +k l+++++ + ++ SDH T095950_1 219 fflphstysKIDHSMGNKtLLSKFKRREIITNSLSDH 255 8888888888899999986556665555555544999 PP >> Flg_hook Flagellar hook-length control protein FliK # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.00067 3.7 34 75 .. 131 173 .. 124 176 .. 0.86 2 ? 2.9 0.0 0.017 92 48 67 .. 182 201 .. 181 205 .. 0.88 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00067 ETT.EEEEEEEE.SCHHHHHHHHTHHHHHHHHHCCTTCCEEEE CS Flg_hook 34 dgg.qlsvqltaenpetrelLeqnlprLreaLaeaGlkldsls 75 +++ ++ ++ a n t++ ++q l++L++ L ++ + +++++ T095950_1 131 QQEeLTTFNIYAPNTGTLRFIKQVLRDLERDLDSHTIIVGDFN 173 445357889***************************9999886 PP == domain 2 score: 2.9 bits; conditional E-value: 0.017 HHHHHHHHTHHHHHHHHHCC CS Flg_hook 48 etrelLeqnlprLreaLaea 67 tr+ +++++++L eaL + T095950_1 182 STRQKINKDIEDLNEALDQI 201 59***************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 504 (0.0309089); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 1870.54 // Query: T095950_2 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 82 (0.00502882); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 1907.22 // Query: T095950_3 [L=340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 66 (0.00404759); expected 326.1 (0.02) Passed bias filter: 27 (0.00165583); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 1907.22 // Query: T156047_1 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 4197.72 // Query: T156047_2 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 4118.52 // Query: T156047_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 4197.72 // Query: T294481_1 [L=145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 864.21 // Query: T294481_2 [L=144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-12 47.3 0.1 2.3e-12 46.9 0.1 1.1 1 DUF1669 Protein of unknown function (DUF1669) Domain annotation for each model (and alignments): >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.9 0.1 1.4e-16 2.3e-12 140 185 .. 15 60 .. 10 64 .. 0.91 Alignments for each domain: == domain 1 score: 46.9 bits; conditional E-value: 1.4e-16 DUF1669 140 viavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemce 185 v avvmd+ft+vdifkdll+a++krk ++yi++de+++k+ l++++ T294481_2 15 VPAVVMDMFTHVDIFKDLLDAGFKRKAALYIIVDESKVKHPLKILK 60 77**************************************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.48 # Mc/sec: 858.25 // Query: T294481_3 [L=144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.49 # Mc/sec: 840.73 // Query: T282001_1 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 109 (0.00668466); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 7592.20 // Query: T282001_2 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00062 19.2 0.2 0.0013 18.2 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.023 14.2 1.8 0.028 13.9 0.1 2.1 2 HARP HepA-related protein (HARP) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.2 1.6e-07 0.0013 3 19 .] 719 735 .. 719 735 .. 0.98 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 1.6e-07 DUF1725 3 agKWMELEnIILSEisQ 19 a++WM E+ ++SEisQ T282001_2 719 ATTWMNMEDVMPSEISQ 735 89**************9 PP >> HARP HepA-related protein (HARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.1 3.5e-06 0.028 1 25 [. 235 259 .. 235 262 .. 0.92 2 ? -3.8 0.1 1.2 9.8e+03 34 44 .. 1105 1115 .. 1104 1118 .. 0.82 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 3.5e-06 HARP 1 FeVeigYheelIavFKqipSrnYdp 25 F+V+ +h +lI +FK i+S nY + T282001_2 235 FVVNHTFHIALIHIFKLIKSHNYHS 259 99*********************75 PP == domain 2 score: -3.8 bits; conditional E-value: 1.2 HARP 34 ledyskLmekv 44 +e++s+Lm + T282001_2 1105 MEEHSMLMDRK 1115 89******875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 7178.08 // Query: T282001_3 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-25 87.2 0.1 1.6e-24 86.6 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.6 0.1 9.7e-29 1.6e-24 102 222 .] 933 1079 .. 928 1079 .. 0.93 Alignments for each domain: == domain 1 score: 86.6 bits; conditional E-value: 9.7e-29 ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHH CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleavee 189 +++i++++ ++++++ ++g++ e ++ k+g++qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+l + +++ T282001_3 933 LKIIRAIYDKPTANIILTGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIKQEKeikgiqlakEEVKLSLFADDMVVYLENpIVSAQNLPKLISN 1030 689*****************99*********************************99***************************6667********** PP HHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 190 wlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + k sg+kin++K++++l+ s+ s+++kyLG++l T282001_3 1031 FSKVSGYKINAQKSQAFLYtnnrqtesqimSElpfiiASKRIKYLGIQL 1079 *****************99999888877661156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 7735.46 // Query: T353749_1 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 8634.51 // Query: T353749_2 [L=1659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 9306.11 // Query: T353749_3 [L=1659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-05 23.8 0.0 1.9e-05 23.8 0.0 1.7 2 AAA_9 ATP-binding dynein motor region D5 ------ inclusion threshold ------ 3.9 7.7 6.2 7.8 6.8 6.2 1.5 1 Ly49 Ly49-like protein, N-terminal region Domain annotation for each model (and alignments): >> AAA_9 ATP-binding dynein motor region D5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.5 2.1 2 1.6e+04 160 189 .. 1271 1300 .. 1261 1309 .. 0.67 2 ! 23.8 0.0 2.3e-09 1.9e-05 25 127 .. 1414 1526 .. 1403 1533 .. 0.73 Alignments for each domain: == domain 1 score: -5.5 bits; conditional E-value: 2 HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS AAA_9 160 erpeleekkeeliqeeaenkkqlkeledkl 189 e + + k ++l++e+++ +k+l++ +l T353749_3 1271 EAERMTLKVQQLTREQQQCHKELQQAYCEL 1300 555556666778888888888887765555 PP == domain 2 score: 23.8 bits; conditional E-value: 2.3e-09 .S-EEEESSSCCHHHHHHH......HEE-TT...STTHHHHHHHHHHCT-EEEES--.SSHHCCCHHHHTTT-EE.......S.....EEEESSCE.E CS AAA_9 25 krwPlliDPqgqaikwiknkekeklkvikls...dkkflktLenairfGkpllienvgeeldpiLepvLekeiikk.....gk.....kliklgdkei 109 rwPl+iDP gqa ++++ + ++ +++++ + +++ L a+r+Gkpl+++ +e+l p+++ Le + + + +++++ T353749_3 1414 PRWPLVIDPLGQAATFLRYQDTNYVDTVNPEplrPETMWLALLGALRYGKPLVFDLREEDLFPVVQRQLEAVQERYlsllrPTdgpeySPTQFQEQ-- 1509 49*****************8888888998887765667778999*************999999999999843333222332013332233333333.. PP E--SS-EEEEEESSTTTH CS AAA_9 110 eynenFrLylttklsnph 127 e+FrL+++tk + p T353749_3 1510 -RLEHFRLFFVTKVQWPP 1526 .44679999999998875 PP >> Ly49 Ly49-like protein, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 6.2 0.00095 7.8 37 112 .. 1223 1315 .. 1216 1320 .. 0.82 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.00095 XX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX..HH...............HHHHHHHHHHHHHHH.HHTTTSXSXXXXXX-SCCEEEE CS Ly49 37 heleetlnlsqnysimqn.dinlkeelLrnkslecsilkd...............lleslkreqkrlysk.tktvlkslqntGklvekhwfCy 112 ++e+ +l+ s++++ d +l e +L+n+ e ++ + ++++l+req++++++ ++ + ++ +++ + w C+ T353749_3 1223 TPQKEVASLDTVVSVLRSwDLSLTEAMLQNMEAEQQRRAQeaqrhkeaeaermtlKVQQLTREQQQCHKElQQAYCELSRRISEHDQCEWRCM 1315 4567777888888888766999***********9998877799999999999999999**********9934556677888899999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1478 (0.0906415); expected 326.1 (0.02) Passed bias filter: 522 (0.0320128); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 8044.27 // Query: T020498_1 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3249.90 // Query: T020498_2 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 3316.23 // Query: T020498_3 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 3385.32 // Query: T184237_1 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.70 # Mc/sec: 6559.47 // Query: T184237_2 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00021 20.7 0.9 0.0004 19.8 0.9 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.9 2.4e-08 0.0004 2 19 .] 971 988 .. 971 988 .. 0.96 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.4e-08 DUF1725 2 FagKWMELEnIILSEisQ 19 F+g+WM+LE IIL + sQ T184237_2 971 FVGTWMKLEIIILTKLSQ 988 9************99998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 7174.43 // Query: T184237_3 [L=1604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 7401.24 // Query: T051372_1 [L=1795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 7232.66 // Query: T051372_2 [L=1794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.69 # Mc/sec: 7438.16 // Query: T051372_3 [L=1794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 7660.19 // Query: T128225_1 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 5937.32 // Query: T128225_2 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-15 56.6 2.4 5.4e-15 55.6 2.4 1.4 1 GP41 Retroviral envelope protein 3.5e-07 30.1 2.8 7.5e-07 29.0 2.8 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.16 10.1 2.4 0.13 10.4 0.2 1.7 2 Fusion_gly Fusion glycoprotein F0 Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.6 2.4 9.9e-19 5.4e-15 2 173 .. 581 748 .. 580 776 .. 0.87 Alignments for each domain: == domain 1 score: 55.6 bits; conditional E-value: 9.9e-19 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX..XX...HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynasesW.ervkkhlegiWnnt 100 a v+l ++q+a +v++ +kn k + Q +i +kl +++n l + v+ +G+ ++sl+++++ +C n C T+ yna e e ++ hl+g ++ T128225_2 581 AGVALHSSIQTAGFVDSWQKNSSKLWNSQSQIGQKLANQINDLCQTVIWMGDWIMSLEHRIQKQCDWNTSDFCFTPSSYNAIEHQ*ETIRRHLQG--KKD 678 5689******************************************************************************999999******9..677 PP HHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 101 evsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 ++ ld++kl++++ ++++++ l+ +d l + l n + l+W++ i + ia + + v l +l l+ T128225_2 679 NLTLDIAKLKKQVFEASQAHLTLLPGADILAGASDGLSNTNP-LKWIETI--GGSTIANFILVCVCLCCLFLV 748 899******************************988776655.59*9964..334444444444555555444 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 2.8 1.4e-10 7.5e-07 3 67 .. 123 187 .. 121 189 .. 0.85 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 1.4e-10 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivs 67 ap h+m +m s eqm t++a p tw q+k l+ +a l t +++a ++++s T128225_2 123 APPVHQMAQMNISVEQMETSKTRQATPLTWGQVKSLAHIAEENLRSLNKLLTTSNLMVAMMVVIS 187 7999****************************************988777666555555555555 PP >> Fusion_gly Fusion glycoprotein F0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.1 0.1 5.4e+02 455 479 .. 162 186 .. 136 188 .. 0.86 2 ? 10.4 0.2 2.3e-05 0.13 82 125 .. 554 598 .. 539 644 .. 0.76 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.1 HHHHHTCCCHHHHHTTXXXXXXXXX CS Fusion_gly 455 snkiLdsvnkkllstaivivlivlv 479 +++ L+s nk l++++ +++++v++ T128225_2 162 AEENLRSLNKLLTTSNLMVAMMVVI 186 6788***************999985 PP == domain 2 score: 10.4 bits; conditional E-value: 2.3e-05 SSSSXCCCXXEEEHHHHXEE.EHHHHHHHHHHHHHHHHHHHHHCC CS Fusion_gly 82 skrkkrflGvvlgaiAlgvA.taAqitAgiAlakalknaeeiakl 125 +r krf+ ++++i +A ta + +Ag+Al+ +++ a+ +++ T128225_2 554 LNRSKRFIFTLIAVIMGLIAvTATAAAAGVALHSSIQTAGFVDSW 598 568889987777765433442677789***********9988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 522 (0.0320128); expected 326.1 (0.02) Passed bias filter: 331 (0.0202993); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 5937.32 // Query: T128225_3 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-45 153.7 0.4 5.9e-45 152.9 0.4 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 152.9 0.4 3.6e-49 5.9e-45 12 166 .. 221 379 .. 216 381 .. 0.91 Alignments for each domain: == domain 1 score: 152.9 bits; conditional E-value: 3.6e-49 HERV-K_env_2 12 yvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvnylqd...fsyqrs 103 +vnds+w+pgpid+r p++peeegm++n+sigy++p iclg a gcl q w+ vp s+ h +sg +++ ++yl+ +++++ T128225_3 221 HVNDSIWMPGPIDNRGPTHPEEEGMLMNVSIGYHFPSICLGPAAGCLNYDKQSWMTCVPAN-NGSKAPIHAISGRTFQSldTIKYLEHgyvMTHRQI 316 79*********************************************************86.5689999*****98875337899975332456667 PP HERV-K_env_2 104 lkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtq 166 k++p+ kpcp++ k s + evl we+c+ans+ +lq n +g +idwap g+f nc+gq + T128225_3 317 NKYKPNKKPCPRKATKWSGKLEVLTWEDCIANSTAVLQSNSYGIVIDWAPMGRFAVNCTGQCE 379 79**********************************************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 6541.12 // Query: T058840_1 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.60 # Mc/sec: 2274.36 // Query: T058840_2 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-13 48.2 0.0 1.5e-12 47.3 0.0 1.5 1 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain Domain annotation for each model (and alignments): >> Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.0 9.4e-17 1.5e-12 17 74 .] 168 225 .. 152 225 .. 0.88 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 9.4e-17 EETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGCHHHH.HHHHHGGEEEEEC CS Cyt-b5 17 airgkVYDvskflsehpGgesvilkyaGkDateafksvvhsekda.ekllkkylvGkla 74 +i+ kVY+vs+++++hpGg++v+++ aG+Da + f ++ h e d+ + +lk +l+G+la T058840_2 168 VINCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAM-HPELDIvQLYLKPLLIGELA 225 69************************************.7777662666888****985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.63 # Mc/sec: 2166.06 // Query: T058840_3 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 2200.99 // Query: T071277_1 [L=1419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 6547.61 // Query: T071277_2 [L=1419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 6245.41 // Query: T071277_3 [L=1419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.68 # Mc/sec: 5969.88 // Query: T094007_1 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 5960.06 // Query: T094007_2 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.091 13.0 8.7 0.2 11.9 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 8.7 1.2e-05 0.2 8 50 .. 716 758 .. 715 765 .. 0.88 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094007_2 716 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 758 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 788 (0.0483258); expected 326.1 (0.02) Passed bias filter: 381 (0.0233656); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 5258.88 // Query: T094007_3 [L=1250] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1250 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.72 # Mc/sec: 4966.72 // Query: T053077_1 [L=2049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.26s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 7815.79 // Query: T053077_2 [L=2048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 8026.00 // Query: T053077_3 [L=2048] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2048 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.61 # Mc/sec: 9604.88 // Query: T227356_1 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 11447.35 // Query: T227356_2 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.60 # Mc/sec: 13546.03 // Query: T227356_3 [L=2840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 12310.24 // Query: T276794_1 [L=2665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.68 # Mc/sec: 11211.93 // Query: T276794_2 [L=2665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.31s 00:00:01.61 Elapsed: 00:00:00.80 # Mc/sec: 9530.14 // Query: T276794_3 [L=2665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.73 # Mc/sec: 10443.99 // Query: T282642_1 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.61 # Mc/sec: 1632.08 // Query: T282642_2 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.49 # Mc/sec: 2031.77 // Query: T282642_3 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-08 34.0 2.2 6.4e-08 33.3 2.2 1.4 1 TGF_beta Transforming growth factor beta like domain Domain annotation for each model (and alignments): >> TGF_beta Transforming growth factor beta like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 2.2 3.9e-12 6.4e-08 2 83 .. 271 346 .. 270 348 .] 0.72 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 3.9e-12 TGF_beta 2 eCrlrelyvsfkdlgwddwiiaPkgyeanyCsGsClskeakaeksatnhavlqslvkelkpekkvpkpcCvPtklsslslly 83 C+l++ +v++++ w ++i+aPk+++++yC+G+C + ++e ++++ ++ ++ p+ ++C+Pt ++ +sl+ T282642_3 271 LCHLQDRKVNLHRAAWGECIVAPKTLSFSYCQGTC--PALNSELRHSSFECYKRA----VPTCPWLFQTCRPTMVRLFSLMV 346 6**********************************..333333333444444333....33223447889999888887775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.52 # Mc/sec: 1914.56 // Query: T138383_1 [L=1360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 6484.55 // Query: T138383_2 [L=1360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 410 (0.0251441); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 6175.76 // Query: T138383_3 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 585 (0.0358764); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 5634.59 // Query: T164716_1 [L=4823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.40s 00:00:02.06 Elapsed: 00:00:00.88 # Mc/sec: 15679.30 // Query: T164716_2 [L=4823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.75 # Mc/sec: 18397.04 // Query: T164716_3 [L=4823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.38s 00:00:02.00 Elapsed: 00:00:00.76 # Mc/sec: 18154.98 // Query: T369079_1 [L=1613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 6786.06 // Query: T369079_2 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.69 # Mc/sec: 6683.56 // Query: T369079_3 [L=1612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 7951.13 // Query: T125521_1 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.57 # Mc/sec: 3462.59 // Query: T125521_2 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 3719.08 // Query: T125521_3 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45 # Mc/sec: 4456.54 // Query: T198788_1 [L=627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.51 # Mc/sec: 3517.14 // Query: T198788_2 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.68 # Mc/sec: 2633.65 // Query: T198788_3 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.64 # Mc/sec: 2798.25 // Query: T357971_1 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1531 (0.0938918); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 3758.69 // Query: T357971_2 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1054 (0.0646388); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.53 # Mc/sec: 4609.71 // Query: T357971_3 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 986 (0.0604685); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.72 # Mc/sec: 3393.26 // Query: T222396_1 [L=1918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.74 # Mc/sec: 7414.96 // Query: T222396_2 [L=1918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.60 # Mc/sec: 9145.12 // Query: T222396_3 [L=1917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 8065.02 // Query: T282260_1 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 9715.38 // Query: T282260_2 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.1 0.2 0.00035 20.0 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.2 2.2e-08 0.00035 1 16 [. 63 78 .. 63 81 .. 0.93 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 2.2e-08 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+W +LE IILS+ T282260_2 63 SFAGTWIKLEAIILSK 78 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 8522.26 // Query: T282260_3 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-25 89.1 0.2 1.9e-25 88.4 0.2 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.4 0.2 1.2e-29 1.9e-25 3 80 .] 1067 1144 .. 1065 1144 .. 0.95 Alignments for each domain: == domain 1 score: 88.4 bits; conditional E-value: 1.2e-29 Transposase_1 3 enkkrsaqWldkgetpkkvpkpelhqkkvmltVwW.sakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 +++ + aqWld++e+pk +pkp+lh+kkvm+tV W sa++li+y+fl++g+ it+e+Yaqq+++++q+ q+++ +nr T282260_3 1067 TSDDQPAQWLDQEEAPKPFPKPKLHEKKVMVTV-W*SAASLIHYSFLNSGKSITTEKYAQQINEMHQNPQCLQLPFANR 1144 67899***************************7.**************************************9987775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 8375.33 // Query: T137529_1 [L=5976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 27.2 0.8 4.3e-06 26.1 0.8 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 0.8 2.6e-10 4.3e-06 2 16 .. 5673 5687 .. 5673 5690 .. 0.93 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 2.6e-10 DUF1725 2 FagKWMELEnIILSE 16 Fag+WMELE IILS+ T137529_1 5673 FAGTWMELEAIILSK 5687 9*************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.61 # Mc/sec: 28026.75 // Query: T137529_2 [L=5976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.31s 00:00:01.62 Elapsed: 00:00:00.60 # Mc/sec: 28493.87 // Query: T137529_3 [L=5975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.32s 00:00:01.75 Elapsed: 00:00:00.57 # Mc/sec: 29471.48 // Query: T245167_1 [L=564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1594 (0.0977554); expected 326.1 (0.02) Passed bias filter: 328 (0.0201153); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 3044.35 // Query: T245167_2 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 878 (0.0538452); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 3158.13 // Query: T245167_3 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 637 (0.0390654); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 3287.04 // Query: T229056_1 [L=4155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 20853.94 // Query: T229056_2 [L=4155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.27s 00:00:01.38 Elapsed: 00:00:00.54 # Mc/sec: 22012.50 // Query: T229056_3 [L=4155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 21226.34 // Query: T183026_1 [L=8138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.34s 00:00:02.10 Elapsed: 00:00:00.63 # Mc/sec: 36954.66 // Query: T183026_2 [L=8138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 660 (0.0404759); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.39s 00:00:02.44 Elapsed: 00:00:00.69 # Mc/sec: 33741.21 // Query: T183026_3 [L=8137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.08 13.1 0.1 4e+02 1.1 0.0 5.4 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.26 4.2e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.9 0.0 0.21 3.4e+03 89 120 .. 5440 5471 .. 5435 5472 .. 0.82 3 ? 0.3 0.0 0.044 7.1e+02 89 121 .. 5484 5516 .. 5480 5520 .. 0.88 4 ? 0.1 0.0 0.05 8.1e+02 88 121 .. 5527 5560 .. 5504 5565 .. 0.85 5 ? -1.3 0.0 0.14 2.3e+03 94 121 .. 5577 5604 .. 5568 5611 .. 0.82 6 ? 0.7 0.0 0.034 5.5e+02 88 121 .. 5615 5648 .. 5592 5651 .. 0.87 7 ? -0.6 0.0 0.081 1.3e+03 86 120 .. 5657 5691 .. 5624 5696 .. 0.68 8 ? 1.1 0.0 0.025 4e+02 88 121 .. 5703 5736 .. 5679 5758 .. 0.88 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.26 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T183026_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.9 bits; conditional E-value: 0.21 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T183026_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555666778888889****************9 PP == domain 3 score: 0.3 bits; conditional E-value: 0.044 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T183026_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: 0.1 bits; conditional E-value: 0.05 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T183026_3 5527 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 577888999999999*****************96 PP == domain 5 score: -1.3 bits; conditional E-value: 0.14 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T183026_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 56677777889***************96 PP == domain 6 score: 0.7 bits; conditional E-value: 0.034 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T183026_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 577888999999999*****************97 PP == domain 7 score: -0.6 bits; conditional E-value: 0.081 EEEEEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 86 sGraeveeggelayelelrvhlslPegekwGGaAf 120 s a+ +++++++ + rv+++ Pe+ ++ G Af T183026_3 5657 SQAARLRQSARVHGPRRQRVYVRAPESTHLAGSAF 5691 44455555666666677788888888888888888 PP == domain 8 score: 1.1 bits; conditional E-value: 0.025 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T183026_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8137 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.70u 0.32s 00:00:02.02 Elapsed: 00:00:00.62 # Mc/sec: 37546.09 // Query: T111441_1 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 2325.19 // Query: T111441_2 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2276.74 // Query: T111441_3 [L=382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2276.74 // Query: T369325_1 [L=3975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.57 # Mc/sec: 19606.55 // Query: T369325_2 [L=3975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.27s 00:00:01.36 Elapsed: 00:00:00.54 # Mc/sec: 21058.89 // Query: T369325_3 [L=3974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.56 # Mc/sec: 19945.51 // Query: T258973_1 [L=2797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.25s 00:00:01.19 Elapsed: 00:00:00.53 # Mc/sec: 15097.63 // Query: T258973_2 [L=2797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 6.7 6.6 10 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00061 10 6 41 .. 1980 2015 .. 1966 2026 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00061 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258973_2 1980 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2015 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 14818.04 // Query: T258973_3 [L=2796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 14543.42 // Query: T079113_1 [L=603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3382.51 // Query: T079113_2 [L=603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 3317.46 // Query: T079113_3 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3376.90 // Query: T039956_1 [L=248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 1418.97 // Query: T039956_2 [L=247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.50 # Mc/sec: 1413.25 // Query: T039956_3 [L=247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1442.09 // Query: T263222_1 [L=2266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11786.62 // Query: T263222_2 [L=2266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-17 62.5 0.0 8.7e-17 61.5 0.0 1.5 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.5 0.0 5.3e-21 8.7e-17 6 125 .. 225 344 .. 221 361 .. 0.79 Alignments for each domain: == domain 1 score: 61.5 bits; conditional E-value: 5.3e-21 EEEEEEEECT.TTEEEEEEEE.CTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHTT CS RNase_H 6 vYtDGsclgn.sgeggagavl.ykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvkn 100 +YtD s++ n +ge++ag+v+ ++ + +++l++ ++ ++aEL+A+++aL+ + +++++niyt S+Y + +++ vh++ k++a +s +k++k T263222_2 225 LYTDESSFINpRGERCAGYVVvTSD-NVIEAKSLPQGTSVQKAELIALTQALElS--EGKTINIYTYSRYDFLTLQ--VHGAlyKEKAL-LNSGGKDIKY 318 8*********88899****662655.446668899******************55..9*************99555..56662144444.5888899*98 PP .HHHHHHHHHCHCSSEEEEEE-SCCS CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHa 125 +e+ +l++++ k++kv ++h++gH+ T263222_2 319 qQEILQLFEAVWKPQKVAVMHCRGHQ 344 89***********************4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11786.62 // Query: T263222_3 [L=2265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-18 64.8 0.0 1.6e-17 63.6 0.0 1.6 1 rve Integrase core domain 2.9e-08 33.7 0.7 8.2e-08 32.3 0.7 1.9 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.0016 18.0 0.0 0.0031 17.1 0.0 1.4 1 rve_3 Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.6 0.0 3e-21 1.6e-17 21 117 .. 501 595 .. 484 597 .. 0.93 Alignments for each domain: == domain 1 score: 63.6 bits; conditional E-value: 3e-21 rve 21 ggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 gg++yll+ + ++s+++ a+++++ +a +v+++l r + ++g p+ + sDn +++++ +++ ++ lgi++++++++rpq+ GkvEr+nrt+k+ T263222_3 501 GGNKYLLILVCTYSGWVEAYPTQTA-KAGEVTRVLLRDLIPRFGL-PLWIGSDNEPAFVADLVQKTAKVLGITWKLHAAYRPQSSGKVERMNRTIKN 595 4579*********************.9999999999999999999.*************************************************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.3 0.7 1.5e-11 8.2e-08 1 39 [] 427 465 .. 427 465 .. 0.99 Alignments for each domain: == domain 1 score: 32.3 bits; conditional E-value: 1.5e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll+r++++ ++ ++ ++V+++C +Cq T263222_3 427 HETTHLGQESLEKLLSRYFYISHLPALTKTVVQRCITCQ 465 9*************************************9 PP >> rve_3 Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 5.6e-07 0.0031 2 30 .. 569 597 .. 568 610 .. 0.91 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 5.6e-07 rve_3 2 gielsyiapgkPqqNglvEsfngtlrdel 30 gi++++ a ++Pq g+vE++n+t+++ l T263222_3 569 GITWKLHAAYRPQSSGKVERMNRTIKNSL 597 9*************************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.51 # Mc/sec: 12705.45 // Query: T069659_1 [L=438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.46 # Mc/sec: 2724.01 // Query: T069659_2 [L=438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2557.23 // Query: T069659_3 [L=438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2610.51 // Query: T125921_1 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 10736.21 // Query: T125921_2 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 10736.21 // Query: T125921_3 [L=1988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 10730.81 // Query: T278187_1 [L=2158] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2158 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2054 (0.125966); expected 326.1 (0.02) Passed bias filter: 557 (0.0341592); expected 326.1 (0.02) Passed Vit filter: 340 (0.0208512); expected 16.3 (0.001) Passed Fwd filter: 60 (0.00367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.41s 00:00:02.53 Elapsed: 00:00:00.69 # Mc/sec: 8947.35 // Query: T278187_2 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.77 9.0 28.1 1.2 8.3 28.1 1.2 1 DUF1510 Protein of unknown function (DUF1510) 2.1 6.4 33.3 2.9 5.9 33.3 1.1 1 CDC45 CDC45-like protein 6.6 6.9 16.5 15 5.7 16.5 1.5 1 PTPRCAP Protein tyrosine phosphatase receptor type C-associ 8.2 6.4 11.7 13 5.7 11.7 1.2 1 DUF262 Protein of unknown function DUF262 Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 28.1 0.0003 1.2 44 123 .. 1344 1418 .. 1324 1436 .. 0.37 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0003 DUF1510 44 ekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenvek 123 k +++++e ++e++k+++k+e+e+ +e +ke + +e++++k+ ++e ++++++e++ ++++++ +++++ + +k T278187_2 1344 RKRKERKKERKKERKKEREKKEKERRKEGKKERKRKERKKKKEGKKERKKEKKKEKER-----KKEKKERKKKKERKRKK 1418 2222223333333333333333333333333333332222222222222222222222.....22222222222222211 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 33.3 0.00072 2.9 130 234 .. 1343 1448 .. 1334 1452 .. 0.57 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00072 CDC45 130 eesdedd.eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrkyeavlekyysqgtsyge 226 e +++++ +e ++++++e+e++e+e+++e +++ +++++k+k++ ++e+++e+++e++rk++++e+++kk r+r+k+++ +++++l k +++ s+ + T278187_2 1343 ERKRKERkKERKKERKKEREKKEKERRKEGKKERKRKERKKKKEGKKERKKEKKKEKERKKEKKERKKKKERKRKKEKKGRKKKTLVKPLAKCYSVET 1440 22222222222222222222222222222223333333333333444444477777777777777778888888999999999999999999999999 PP CDC45 227 svsslmYs 234 s+s+l+ s T278187_2 1441 SSSVLLLS 1448 99998765 PP >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 16.5 0.0037 15 39 110 .. 1353 1437 .. 1333 1453 .. 0.54 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0037 PTPRCAP 39 edgeedeeeEdqedeedeeedsedleggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedaege.............a 110 ++e ++e E++e e +e ++e +++++++++ ++e+++++++++e + ek+e k++e++ k++ +g + T278187_2 1353 RKKERKKEREKKEKERRKEGKKERKRKERKKKKEGKKERKKEKKKEKERKKEKKERKKKKERKRKKEKKGRkkktlvkplakcyS 1437 2334444455555555555555555555554444444444444444555555557777777777777777655666666655554 PP >> DUF262 Protein of unknown function DUF262 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 11.7 0.0032 13 87 158 .. 1347 1429 .. 1306 1457 .. 0.49 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0032 DUF262 87 knleaeiek....ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdl.......akeekrneeknli 158 k+ ++e +k e+e+++++r k ++e++++ +k+ +++k++++ek++++e+++ +k+ +ke+k +++k+l T278187_2 1347 KERKKERKKerkkEREKKEKERRKEGKKERKRKERKKKKEGKKERKKEKKKEKERKKEKKERKkkkerkrKKEKKGRKKKTLV 1429 22222222222223333333444444444444444444444444444433333333322222211000113333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2437 (0.149454); expected 326.1 (0.02) Passed bias filter: 766 (0.0469766); expected 326.1 (0.02) Passed Vit filter: 460 (0.0282105); expected 16.3 (0.001) Passed Fwd filter: 94 (0.00576475); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.76u 0.41s 00:00:03.17 Elapsed: 00:00:00.76 # Mc/sec: 8119.49 // Query: T278187_3 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2100 (0.128787); expected 326.1 (0.02) Passed bias filter: 582 (0.0356924); expected 326.1 (0.02) Passed Vit filter: 344 (0.0210965); expected 16.3 (0.001) Passed Fwd filter: 75 (0.00459953); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.21u 0.35s 00:00:02.56 Elapsed: 00:00:00.68 # Mc/sec: 9074.72 // Query: T157131_1 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 1953.89 // Query: T157131_2 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 1481.17 // Query: T157131_3 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.66 # Mc/sec: 1391.40 // Query: T276418_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 4155.02 // Query: T276418_2 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.74 # Mc/sec: 3537.38 // Query: T276418_3 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 4155.02 // Query: T112469_1 [L=1374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 5866.84 // Query: T112469_2 [L=1373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 6137.37 // Query: T112469_3 [L=1373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 6657.49 // Query: T154835_1 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 7290.65 // Query: T154835_2 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 6665.73 // Query: T154835_3 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 6391.80 // Query: T222367_1 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.60 # Mc/sec: 6103.10 // Query: T222367_2 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.62 # Mc/sec: 5906.23 // Query: T222367_3 [L=1280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.62 # Mc/sec: 5906.23 // Query: T229052_1 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.77 # Mc/sec: 5194.08 // Query: T229052_2 [L=1397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-10 40.6 0.0 2.4e-10 40.1 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.0 1.5e-14 2.4e-10 112 210 .] 63 197 .. 50 197 .. 0.94 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 1.5e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke.......................................snseg.evvvvfvlYr 171 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ ++ +g + + +++Y T229052_2 63 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYC 161 89********************.9***********************************************************75645************ PP GAIN 172 nLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229052_2 162 TPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 197 ****9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.69 # Mc/sec: 5792.14 // Query: T229052_3 [L=1397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0029 18.1 0.1 0.0097 16.4 0.1 2.0 1 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 6e-07 0.0097 10 42 .] 1033 1066 .. 1030 1066 .. 0.87 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 6e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229052_3 1033 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1066 579********8544.6***************766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.70 # Mc/sec: 5709.40 // Query: T138162_1 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 2574.75 // Query: T138162_2 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 2877.66 // Query: T138162_3 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.61 # Mc/sec: 2405.91 // Query: T353728_1 [L=3508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.35s 00:00:01.59 Elapsed: 00:00:00.65 # Mc/sec: 15439.68 // Query: T353728_2 [L=3507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.83 # Mc/sec: 12087.87 // Query: T353728_3 [L=3507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.33s 00:00:01.63 Elapsed: 00:00:00.86 # Mc/sec: 11666.20 // Query: T018764_1 [L=6161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-16 60.1 7.5 4.2e-16 59.2 7.5 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 7.5 2.6e-20 4.2e-16 3 69 .. 180 245 .. 179 247 .. 0.93 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 2.6e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+e++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018764_1 180 KKELTLKDVECKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 245 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.17u 0.42s 00:00:02.59 Elapsed: 00:00:00.90 # Mc/sec: 19583.97 // Query: T018764_2 [L=6161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-09 34.9 0.5 1.8e-08 34.0 0.5 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.5 1.1e-12 1.8e-08 185 228 .. 1655 1698 .. 1651 1704 .. 0.92 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 1.1e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018764_2 1655 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 1698 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.84u 0.40s 00:00:02.24 Elapsed: 00:00:00.71 # Mc/sec: 24824.75 // Query: T018764_3 [L=6161] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-09 35.8 0.0 1.3e-08 35.1 0.0 1.3 1 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.1 0.0 7.9e-13 1.3e-08 64 107 .. 239 281 .. 235 283 .. 0.95 Alignments for each domain: == domain 1 score: 35.1 bits; conditional E-value: 7.9e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018764_3 239 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 281 799****************************.**********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6161 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.88u 0.40s 00:00:02.27 Elapsed: 00:00:00.87 # Mc/sec: 20259.28 // Query: T122854_1 [L=1721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.77 # Mc/sec: 6394.14 // Query: T122854_2 [L=1721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 7941.11 // Query: T122854_3 [L=1721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.63 # Mc/sec: 7815.06 // Query: T173026_1 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 3277.83 // Query: T173026_2 [L=676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 3334.35 // Query: T173026_3 [L=675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 3576.04 // Query: T161209_1 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.5 2.9 0.14 12.1 2.9 1.1 1 DDHD DDHD domain 3 8.1 11.6 4.9 7.5 11.6 1.3 1 RNA_pol_Rpc4 RNA polymerase III RPC4 4.2 6.9 14.9 5.7 6.5 14.9 1.1 1 AAA_11 AAA domain Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 2.9 2.6e-05 0.14 139 188 .. 323 376 .. 261 447 .. 0.57 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 2.6e-05 DDHD 139 ksherssesskesqeskaaesssasssaksssaee....kveledkeleeeaee 188 ++er+++++ke+++++++++++++++++++ ++e k++ e+k+ e++++e T161209_1 323 RKKERKRKRKKEERRKERERKKERKRKKERTRKKErkekKERKEKKRKEKKRKE 376 111111111111111111111111111111111111010111111111111111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 11.6 0.00091 4.9 22 67 .. 325 371 .. 257 382 .. 0.39 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00091 RNA_pol_Rpc4 22 aaeddkseaksqsaekakaeeeakaekes.gaeaeekkekkkeskkk 67 ++ + k+++++ ++e+++++e++++++++ ++e +ekke k+++ k+ T161209_1 325 KERKRKRKKEERRKERERKKERKRKKERTrKKERKEKKERKEKKRKE 371 11111111111111111111111111111011111111111111111 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 14.9 0.001 5.7 123 189 .. 312 378 .. 236 383 .. 0.55 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.001 AAA_11 123 kaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesl 189 + + +e k+++k++k+ r++ee ++++++k+++ +k+++++++rk kkerke +++ ++++e+ T161209_1 312 RRKEGREGGKKRKKERKRKRKKEERRKERERKKERKRKKERTRKKERKEKKERKEKKRKEKKRKEKK 378 2222223333333333333333333333333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2305 (0.141359); expected 326.1 (0.02) Passed bias filter: 723 (0.0443395); expected 326.1 (0.02) Passed Vit filter: 364 (0.0223231); expected 16.3 (0.001) Passed Fwd filter: 52 (0.00318901); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:00.73 # Mc/sec: 1967.31 // Query: T161209_2 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.8 7.1 23.6 5 6.7 23.6 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 23.6 0.00031 5 91 162 .. 304 380 .. 246 385 .. 0.64 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00031 RR_TM4-6 91 a.....eeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkkeeaeaeese 162 + ++e +e +e+++e+++e+ +++++++g+ke+ +k++ e kke+e ++e+k+kk+k++++kk ++++++ + T161209_2 304 Kkk*krRKEGRKEGREGKRERKKERGKERKKKEGKKEKGRKKERERKKEQERKKEKKRKKEKKRKEKKRKEKKRKEK 380 13455555667777777777777777777766666666665544444444444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2174 (0.133325); expected 326.1 (0.02) Passed bias filter: 588 (0.0360603); expected 326.1 (0.02) Passed Vit filter: 260 (0.0159451); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 2471.17 // Query: T161209_3 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00071 18.3 9.0 0.00093 17.9 9.0 1.2 1 Tim54 Inner membrane protein import complex subunit T 0.0074 14.9 12.1 0.0099 14.5 12.1 1.1 1 Presenilin Presenilin ------ inclusion threshold ------ 0.17 11.9 7.9 0.23 11.4 7.9 1.2 1 DDHD DDHD domain 0.18 9.9 26.7 0.24 9.5 26.7 1.1 1 CDC45 CDC45-like protein 0.21 10.1 48.1 0.28 9.7 48.1 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 4.3 6.1 7.6 5.9 5.6 7.6 1.1 1 DUF913 Domain of Unknown Function (DUF913) 7.6 6.1 7.2 11 5.6 7.2 1.1 1 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s Domain annotation for each model (and alignments): >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 9.0 4e-07 0.00093 181 260 .. 310 392 .. 294 435 .. 0.59 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 4e-07 Tim54 181 GlhEGlLGPldapeepeeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkp....yispedYa 260 G +EG G ++ +e+++ee++e++++e+++kee+++e+ e++++ke++k++e+++++e++ kekk+k k+ sp+ Y+ T161209_3 310 GKKEGRKGGREKEKERKKEEKKERRKKERKRKEERKKEK-ERKNKKERKKRKERKKRKEKKRKEKKRKEKKSyfmsSSSPSPYS 392 678899999999877777777776666666666555555.33333333333333333333333334444444100044455555 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 12.1 4.2e-06 0.0099 237 317 .. 299 378 .. 279 426 .. 0.41 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 4.2e-06 Presenilin 237 aeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeees 317 +++ +++kke +++ +++ +e+e+e +++++++++++e++++e++++e+e ++++e+k+++e+++++e+ +++e++++e+ T161209_3 299 GKKKLKKNKKEGKKEGRKGGREKEKERKKEEKKERRKKERKRKEERKKEKERKNKKERKKRKERKKRKEK-KRKEKKRKEK 378 2222222222222222222222222222222222222222222222222222222222222222222211.1111222211 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 7.9 0.0001 0.23 112 181 .. 310 370 .. 272 438 .. 0.48 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.0001 DDHD 112 lvsslssllnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaee.......kveledke 181 ++ + k +k++er++e++ke++++++++++++++++++++++e k++ e+k+ T161209_3 310 GKKEGR---------------KG-GREKEKERKKEEKKERRKKERKRKEERKKEKERKNKKErkkrkerKKRKEKKR 370 111111...............11.11111111111111111111111111111111111111111000011111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 26.7 0.0001 0.24 140 224 .. 305 387 .. 277 400 .. 0.46 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0001 CDC45 140 eedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrkyeavlekyysqgtsy 224 +++++ ++e ++ +e+e+e+++ee+k++rk++++++ee+++e+er++k++r++ ++++++r++kk+++k++++ ++y+ +s T161209_3 305 KNKKEGKKEGRKGGREKEKERKKEEKKERRKKERKRKEERKKEKERKNKKERKK-RKERKKRKEKKRKEKKRKEKKSYFM-SSSS 387 222222333333333333334444444444455555555555555555555555.2222223333333333444444443.3443 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 48.1 0.00012 0.28 88 185 .. 297 378 .. 277 391 .. 0.40 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00012 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS MIP-T3 88 skgkaaktkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkk 185 s+gk++ ++++ke+kke +k +ekeke++ke+ k+e+ +k r++++e++kek++k++k+r+k ker++ k+++r++k++k+k T161209_3 297 SQGKKK--------------LKKNKKEGKKEGRKGGREKEKERKKEE--KKERRKKERKRKEERKKEKERKNKKERKKRKERKKRKEKKRKEKKRKEK 378 222222..............233333333333444444444433333..2222222222333333333333333333333333333333333333221 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 7.6 0.0025 5.9 262 317 .. 307 374 .. 280 417 .. 0.46 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0025 DUF913 262 d...............assasskseasssssssetkeeek...........ssededvemedaeaetesesdeeeeseeeke 317 + + + k+e++++ + ++e+e +++++ ++++++++ +e++++ek+ T161209_3 307 KkegkkegrkggrekeK---ERKKEEKKE----------RrkkerkrkeerKKEKERKNKKER-KKRKERKKRKEKKRKEKK 374 23333333333322111...111111111..........011111111111111111111111.111111111222222222 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 7.2 0.0045 11 45 137 .. 288 380 .. 282 394 .. 0.84 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0045 AAA_21 45 ipslldlydpeipfefeieeflsqgvryryglrlersqv.eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepnd 137 +p+l++++ ++ ++ + + + +++ r g r +++ +e +++++++++++ +k+ +e+ +++ ++r +r+ ++++++ke+ ++e + T161209_3 288 QPGLQNETLSQGKKKLKKN-KKEGKKEGRKGGREKEKERkKEEKKERRKKERKRKEERKKEKERKNKKERKKRKERKKRKEKKRKEKKRKEKKS 380 5666666777777777777.66777777777788888889***********************************************9998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2623 (0.160861); expected 326.1 (0.02) Passed bias filter: 854 (0.0523734); expected 326.1 (0.02) Passed Vit filter: 467 (0.0286398); expected 16.3 (0.001) Passed Fwd filter: 83 (0.00509015); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.69 # Mc/sec: 2077.21 // Query: T172344_1 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 6881.05 // Query: T172344_2 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 6034.15 // Query: T172344_3 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-05 24.7 0.0 4e-05 23.7 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 2.5e-09 4e-05 5 55 .. 149 200 .. 146 211 .. 0.85 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 2.5e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaL 55 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172344_3 149 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRAS 200 68*******99999******766766.557778999**************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 5938.39 // Query: T156682_1 [L=1872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 7336.27 // Query: T156682_2 [L=1871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 7434.18 // Query: T156682_3 [L=1871] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1871 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 8496.21 // Query: T067578_1 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 2007.43 // Query: T067578_2 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.69 # Mc/sec: 1712.35 // Query: T067578_3 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 2461.51 // Query: T053001_1 [L=3073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.40s 00:00:01.75 Elapsed: 00:00:00.77 # Mc/sec: 11417.31 // Query: T053001_2 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.67 # Mc/sec: 13117.12 // Query: T053001_3 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.62 # Mc/sec: 14174.95 // Query: T052010_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.63 # Mc/sec: 12097.22 // Query: T052010_2 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 11725.00 // Query: T052010_3 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.29s 00:00:01.44 Elapsed: 00:00:00.79 # Mc/sec: 9643.53 // Query: T118460_1 [L=2017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.75 # Mc/sec: 7693.73 // Query: T118460_2 [L=2017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2017 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 10685.73 // Query: T118460_3 [L=2016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2016 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.54 # Mc/sec: 10680.43 // Query: T077404_1 [L=1789] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1789 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 8824.18 // Query: T077404_2 [L=1788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.72 # Mc/sec: 7104.39 // Query: T077404_3 [L=1788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9651.25 // Query: T125950_1 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.45 # Mc/sec: 8716.00 // Query: T125950_2 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.46 # Mc/sec: 8526.52 // Query: T125950_3 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.47 # Mc/sec: 8339.02 // Query: T112514_1 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 10369.05 // Query: T112514_2 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 10369.05 // Query: T112514_3 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-08 34.6 0.0 2.7e-08 33.9 0.0 1.3 1 rve Integrase core domain 3.5e-08 33.1 0.0 6.2e-08 32.3 0.0 1.3 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.9 0.0 3.3e-12 2.7e-08 17 117 .. 132 225 .. 126 227 .. 0.82 Alignments for each domain: == domain 1 score: 33.9 bits; conditional E-value: 3.3e-12 rve 17 ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlk 116 +p+++g+ ++l+ id++ r++ +++ t+++++e+ + p + sD+g+ +t+k++ +++ +gi++s++ p++p+ G++E n++ k T112514_3 132 LPSWKGQRFVLTEIDTYCRYACN-----ASAKTTICGVMECLIHCHSI--PYSIASDQGTPFTAKEVWQWAHAHGIHLSYHVPHHPEAAGLIEEWNGLSK 224 45666667777777777665543.....33456699999988888888..9*********************************************9987 PP rve 117 d 117 T112514_3 225 S 225 6 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.3 0.0 7.6e-12 6.2e-08 8 110 .. 296 398 .. 290 417 .. 0.89 Alignments for each domain: == domain 1 score: 32.3 bits; conditional E-value: 7.6e-12 ESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECG CS dUTPase 8 rkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilta 107 + + s+g+++ + ++++ get+++p++ ++ p g+ + +lp+S a+kg++v++g+id y+ +++ l n +k++ ++gd + +L+ ++ + T112514_3 296 PMTLHSVGLEVLIPVGIMLPSGETTTIPLNWKLRFPPGHFGPLLPSSPQAKKGVTVLTGLIDLNYQDAISLLLHNGGKEEYVWNTGDPLGHLLTLPCPVI 395 566678999999999******************************************************************************9999776 PP EEE CS dUTPase 108 ele 110 +++ T112514_3 396 KVN 398 655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.47 # Mc/sec: 10810.29 // Query: T156301_1 [L=2052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.51 # Mc/sec: 11510.63 // Query: T156301_2 [L=2051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 625 (0.0383294); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.50 # Mc/sec: 11735.12 // Query: T156301_3 [L=2051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.51 # Mc/sec: 11505.02 // Query: T151415_1 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.43 # Mc/sec: 5016.43 // Query: T151415_2 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.46 # Mc/sec: 4689.27 // Query: T151415_3 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 4683.05 // Query: T126027_1 [L=1618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 8901.58 // Query: T126027_2 [L=1618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 8901.58 // Query: T126027_3 [L=1617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.50 # Mc/sec: 9251.92 // Query: T000470_1 [L=4646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.30s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 23318.27 // Query: T000470_2 [L=4645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.56 # Mc/sec: 23729.56 // Query: T000470_3 [L=4645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.28s 00:00:01.43 Elapsed: 00:00:00.54 # Mc/sec: 24608.44 // Query: T112599_1 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-17 62.6 7.5 9.1e-17 61.6 7.5 1.5 1 7tm_4 Olfactory receptor 8.7e-09 34.9 1.5 2.2e-08 33.5 1.5 1.7 1 7tm_1 7 transmembrane receptor (rhodopsin family) Domain annotation for each model (and alignments): >> 7tm_4 Olfactory receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.6 7.5 1.1e-20 9.1e-17 1 92 [. 217 309 .. 217 325 .. 0.92 Alignments for each domain: == domain 1 score: 61.6 bits; conditional E-value: 1.1e-20 7tm_4 1 fsliyliillGnliilfvirtessl.hqPmylflamlalidlglsastlptvlGiflvelreisleaclaqsffihklsllesavllamavdr 92 f + y+ i+lGnl+i+ +++++ l Pmy+fl l+ idl+ls tlp++lG fl + + is+ claq +f+h l e l ma+d T112599_1 217 FLFFYIAIVLGNLLIVVTVQAHAHLlQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGKSISFSGCLAQIYFLHFLGASEMFLLTVMAYDS 309 5678************999999876156**************************************************************995 PP >> 7tm_1 7 transmembrane receptor (rhodopsin family) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 1.5 2.8e-12 2.2e-08 1 81 [. 227 308 .. 227 308 .. 0.90 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 2.8e-12 HHHHHHHHHHH-CC.C-SHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSSCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF 7tm_1 1 gNllvllviltkks.lrtstnyfilsLaisDlllgllvlpfaiiyeltnewlfgsvlCklwlsldvvlstasilnllaisiD 81 gNll+++++ + + l+++++yf+ +L++ Dl+l++++lp ++ +l + ++ +C ++++ +l +++++l+++++D T112599_1 227 GNLLIVVTVQAHAHlLQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGKSISFSGCLAQIYFLHFLGASEMFLLTVMAYD 308 799999888887775899**************************877666666878************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 9049.56 // Query: T112599_2 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 9049.56 // Query: T112599_3 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.50 # Mc/sec: 8868.57 // Query: T186294_1 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 8797.05 // Query: T186294_2 [L=1476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 8279.58 // Query: T186294_3 [L=1475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1475 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 8791.09 // Query: T337202_1 [L=2277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 11.5 25.8 60 3.5 0.0 10.1 13 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.077 1.3e+03 9 17 .. 1056 1064 .. 1052 1065 .. 0.88 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1075 1083 .. 1074 1083 .. 0.86 3 ? 2.7 0.0 0.0068 1.1e+02 1 17 [. 1086 1102 .. 1086 1103 .. 0.87 4 ? 3.5 0.0 0.0037 60 1 17 [. 1124 1140 .. 1124 1141 .. 0.89 5 ? 3.5 0.0 0.0037 60 1 17 [. 1143 1159 .. 1143 1160 .. 0.89 6 ? 3.5 0.0 0.0037 60 1 17 [. 1181 1197 .. 1181 1198 .. 0.89 7 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1208 1214 .. 1207 1215 .. 0.89 8 ? -2.5 0.0 0.28 4.6e+03 9 15 .. 1245 1251 .. 1243 1252 .. 0.89 9 ? 3.5 0.0 0.0037 60 1 17 [. 1256 1272 .. 1256 1273 .. 0.89 10 ? 3.5 0.0 0.0037 60 1 17 [. 1294 1310 .. 1294 1311 .. 0.89 11 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1321 1327 .. 1320 1328 .. 0.89 12 ? -1.2 0.0 0.11 1.8e+03 1 15 [. 1368 1382 .. 1368 1383 .. 0.84 13 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1394 1400 .. 1393 1401 .. 0.89 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.077 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337202_1 1056 VCPGVESSA 1064 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337202_1 1075 LCPGVESSA 1083 6*****976 PP == domain 3 score: 2.7 bits; conditional E-value: 0.0068 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337202_1 1086 WSHLPWSRVCPGVESSA 1102 77778999******977 PP == domain 4 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_1 1124 WSRLPWSGVCPGVESSA 1140 788889********977 PP == domain 5 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_1 1143 WSRLPWSGVCPGVESSA 1159 788889********977 PP == domain 6 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_1 1181 WSRLPWSGVCPGVESSA 1197 788889********977 PP == domain 7 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337202_1 1208 VCPGVES 1214 9****98 PP == domain 8 score: -2.5 bits; conditional E-value: 0.28 Ectatomin 9 vCPTlks 15 vCP ++s T337202_1 1245 VCPGVES 1251 9****98 PP == domain 9 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_1 1256 WSRLPWSGVCPGVESSA 1272 788889********977 PP == domain 10 score: 3.5 bits; conditional E-value: 0.0037 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_1 1294 WSRLPWSGVCPGVESSA 1310 788889********977 PP == domain 11 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337202_1 1321 VCPGVES 1327 9****98 PP == domain 12 score: -1.2 bits; conditional E-value: 0.11 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP +s T337202_1 1368 WSRLPWSGVCPGAES 1382 788889*****8876 PP == domain 13 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337202_1 1394 VCPGVES 1400 9****98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.50 # Mc/sec: 13028.22 // Query: T337202_2 [L=2277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.038 13.8 32.6 57 3.6 0.0 12.9 15 Ectatomin Ectatomin Domain annotation for each model (and alignments): >> Ectatomin Ectatomin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.096 1.6e+03 9 17 .. 1011 1019 .. 1010 1020 .. 0.89 2 ? -3.1 0.0 0.43 7e+03 9 17 .. 1049 1057 .. 1048 1057 .. 0.86 3 ? 1.4 0.0 0.017 2.8e+02 1 17 [. 1060 1076 .. 1060 1077 .. 0.88 4 ? 3.2 0.0 0.0048 79 1 17 [. 1098 1114 .. 1098 1115 .. 0.87 5 ? -2.6 0.1 0.29 4.8e+03 9 15 .. 1126 1132 .. 1125 1133 .. 0.89 6 ? 2.0 0.1 0.011 1.8e+02 1 15 [. 1155 1169 .. 1155 1171 .. 0.89 7 ? 3.2 0.0 0.0048 79 1 17 [. 1193 1209 .. 1193 1210 .. 0.87 8 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1216 1225 .. 1212 1227 .. 0.88 9 ? 3.6 0.0 0.0035 57 1 17 [. 1230 1246 .. 1230 1248 .. 0.89 10 ? 1.7 0.1 0.014 2.3e+02 1 15 [. 1268 1282 .. 1268 1284 .. 0.87 11 ? 3.2 0.0 0.0048 79 1 17 [. 1306 1322 .. 1306 1323 .. 0.87 12 ? -0.0 0.1 0.048 7.8e+02 6 15 .. 1329 1338 .. 1325 1340 .. 0.88 13 ? 3.2 0.0 0.0048 79 1 17 [. 1343 1359 .. 1343 1360 .. 0.87 14 ? 1.1 0.0 0.021 3.4e+02 6 17 .. 1384 1395 .. 1383 1396 .. 0.89 15 ? -2.3 0.0 0.25 4.1e+03 6 14 .. 1402 1410 .. 1402 1412 .. 0.85 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.096 Ectatomin 9 vCPTlksmA 17 vCP ++s A T337202_2 1011 VCPGVESSA 1019 9*****977 PP == domain 2 score: -3.1 bits; conditional E-value: 0.43 Ectatomin 9 vCPTlksmA 17 CP ++s A T337202_2 1049 LCPGVESSA 1057 6*****976 PP == domain 3 score: 1.4 bits; conditional E-value: 0.017 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_2 1060 WSRLPWSRVCPGMESSA 1076 7888899*******977 PP == domain 4 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337202_2 1098 WSHLPWSGVCPGVESSA 1114 7777899*******977 PP == domain 5 score: -2.6 bits; conditional E-value: 0.29 Ectatomin 9 vCPTlks 15 vCP ++s T337202_2 1126 VCPGVES 1132 9****98 PP == domain 6 score: 2.0 bits; conditional E-value: 0.011 Ectatomin 1 iskkvklTvCPTlks 15 +s+ + vCP ++s T337202_2 1155 WSRLPWSGVCPGVES 1169 788889*******98 PP == domain 7 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337202_2 1193 WSHLPWSGVCPGVESSA 1209 7777899*******977 PP == domain 8 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337202_2 1216 WSGVCPGVES 1225 889*****98 PP == domain 9 score: 3.6 bits; conditional E-value: 0.0035 Ectatomin 1 iskkvklTvCPTlksmA 17 +s+ + vCP ++s A T337202_2 1230 WSRLPWSGVCPGVESSA 1246 788889********987 PP == domain 10 score: 1.7 bits; conditional E-value: 0.014 Ectatomin 1 iskkvklTvCPTlks 15 +s + vCP ++s T337202_2 1268 WSHLPWSGVCPGVES 1282 7777899******98 PP == domain 11 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337202_2 1306 WSHLPWSGVCPGVESSA 1322 7777899*******977 PP == domain 12 score: -0.0 bits; conditional E-value: 0.048 Ectatomin 6 klTvCPTlks 15 + vCP ++s T337202_2 1329 WSGVCPGVES 1338 889*****98 PP == domain 13 score: 3.2 bits; conditional E-value: 0.0048 Ectatomin 1 iskkvklTvCPTlksmA 17 +s + vCP ++s A T337202_2 1343 WSHLPWSGVCPGVESSA 1359 7777899*******977 PP == domain 14 score: 1.1 bits; conditional E-value: 0.021 Ectatomin 6 klTvCPTlksmA 17 + vCP ++s A T337202_2 1384 WSGVCPGVESSA 1395 788******977 PP == domain 15 score: -2.3 bits; conditional E-value: 0.25 Ectatomin 6 klTvCPTlk 14 + vCP ++ T337202_2 1402 WSGVCPGVE 1410 788***998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.53 # Mc/sec: 12290.77 // Query: T337202_3 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.50 # Mc/sec: 13022.50 // Query: T209729_1 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 5622.41 // Query: T209729_2 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 5739.54 // Query: T209729_3 [L=962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5504.24 // Query: T351462_1 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.54 # Mc/sec: 17133.19 // Query: T351462_2 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-22 80.2 1.3 2.2e-22 79.5 1.3 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 3.2e-10 40.1 0.0 5.3e-10 39.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.3e-07 31.3 1.1 2.9e-07 30.2 1.1 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 1.3 4.1e-26 2.2e-22 1 121 [. 3102 3231 .. 3102 3234 .] 0.96 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 4.1e-26 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK g ++++Rp+sl+++d k+lnkl+a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T351462_2 3102 IPKSGrdttkKENFRPVSLMNIDAKILNKLLANRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 3199 788888888889***************************************************99999999999999********************* PP GGGG-EEET....................... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvnge 121 ++l++++++ + ++i +++ ++++++ +ng+ T351462_2 3200 KTLNKLGIDGTYFKIITAIYDKPTANIILNGQ 3231 ***************************99997 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.0 9.8e-14 5.3e-10 1 113 [] 2596 2815 .. 2596 2815 .. 0.85 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 9.8e-14 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T351462_2 2596 LTLNVNG----LNAPIKKHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKpskikrdkeghyimv 2685 699****....7888999*******************99988877766668866677888899999*****99999777788999999**9999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T351462_2 2686 kgsiqqegliilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrsmrqkvnkdtqvlnsalhqadlidiyrtlhpksteytff 2779 9999999*9999999999999999999999999999999999******9999999999999999999999999999999999999998888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T351462_2 2780 saphntysKIDHILGSKALLSKCKRTEIITNYlSDH 2815 8888888888*****985544444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 1.1 5.3e-11 2.9e-07 2 118 .. 2695 2818 .. 2694 2819 .. 0.81 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 5.3e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + + +++ ++ + L + l++ +l + ++k++ tf s + T351462_2 2695 IILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSMRQKvNKDTQVLNSALHQADLIDIyrtLHPKSTeYTFFSAPHn 2784 58899**9999.777777777788788876.89*************998877789999***********98666664444444777554444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH+ i T351462_2 2785 tYSKIDHILGSKALLSKckRTEIITNYLSDHSTI 2818 58***************98666779******987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 962 (0.0589967); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 15681.23 // Query: T351462_3 [L=3234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-151 503.0 20.2 4.9e-151 502.6 20.2 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.096 12.8 3.5 0.23 11.6 3.5 1.6 1 KLRAQ Predicted coiled-coil domain-containing prote 0.18 11.9 5.7 0.31 11.1 5.7 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 4.3 7.0 8.5 11 5.7 8.5 1.6 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 502.6 20.2 1.2e-154 4.9e-151 1 368 [] 2226 2561 .. 2226 2561 .. 0.98 Alignments for each domain: == domain 1 score: 502.6 bits; conditional E-value: 1.2e-154 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e++++++y+el e+ ++k+ke+e ++k++ee ntek+lk T351462_3 2226 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRRSNYSELWEDSQTKGKEVEnFEKNLEEcitritNTEKCLK 2313 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkileq 178 el+elk+k++el++e++ sl+sr d+leervsa+ede++e+ + e+k+rekr+k++eq T351462_3 2314 ------------------ELMELKAKARELHEECR------------------SLRSRHDQLEERVSAMEDEVNEM-K*EGKFREKRIKRNEQ 2369 ..................9****************..................**********************9.5559************ PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnlrliGv+es+ e+ +klen+l++i +enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rek T351462_3 2370 SLQEIWDYVKRPNLRLIGVPESDGENETKLENTLQDINQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREK 2462 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 GrvtlkGkPirl ad+saetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T351462_3 2463 GRVTLKGKPIRLPADFSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 2555 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 l++++ T351462_3 2556 LLQNHA 2561 ****96 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 3.5 5.8e-05 0.23 30 79 .. 2310 2366 .. 2296 2378 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 5.8e-05 KLRAQ 30 elkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsk 79 + +el e +++ r ++E sL r +qLe rv+++ +e++e + K++ + T351462_3 2310 KCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNEMK*egkfreKRIKR 2366 4445566666778999**************************988875333222222 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 5.7 7.7e-05 0.31 6 99 .. 2259 2352 .. 2255 2354 .. 0.96 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 7.7e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ ++ ++ ++ ++ lee+ ++ + k +++++ k++a el +e ++l + ++le++++++e+e+++ T351462_3 2259 WMENDFDELREEGFRRSNYSELWEDSQTKGKEVENFEKNLEECITRITNTEKCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNE 2352 7889***************************************************************************************987 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 8.5 0.0026 11 121 185 .. 2279 2348 .. 2238 2381 .. 0.52 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0026 IncA 121 lq.eelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqr 185 ++ e+ +++++++e++e++++e +i++++ el +lk + +el +e+++l++++++l+++++ ++ T351462_3 2279 ELwEDSQTKGKEVENFEKNLEECITRITNTEkclkELMELKAKARELHEECRSLRSRHDQLEERVSAMED 2348 3334444444444444444444444444444444444444444444444444444444444443333322 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 756 (0.0463633); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 16521.29 // Query: T229455_1 [L=2513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2513 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 13313.46 // Query: T229455_2 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 14090.99 // Query: T229455_3 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.6 7.2 3 7.5 7.2 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 7.2 0.00018 3 1 25 [. 1812 1836 .. 1812 1838 .. 0.90 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00018 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T229455_3 1812 GRKEGREGGREEGRKEGRKEGRKEG 1836 7799999999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 11590.98 // Query: T221792_1 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 2874.90 // Query: T221792_2 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.68 # Mc/sec: 2574.75 // Query: T221792_3 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.61 # Mc/sec: 2870.21 // Query: T277924_1 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 3084.49 // Query: T277924_2 [L=593] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (593 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.52 # Mc/sec: 3262.45 // Query: T277924_3 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 3079.29 // Query: T367385_1 [L=2813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.80 # Mc/sec: 10059.39 // Query: T367385_2 [L=2813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 669 (0.0410278); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.73 # Mc/sec: 11023.99 // Query: T367385_3 [L=2813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 559 (0.0342819); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.72 # Mc/sec: 11177.10 // Query: T383217_1 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-36 126.3 2.3 2.4e-18 65.9 0.0 2.1 2 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.9 0.0 1.5e-22 2.4e-18 187 269 .. 108 190 .. 100 192 .. 0.94 2 ! 60.1 0.6 8.6e-21 1.4e-16 267 321 .. 229 283 .. 221 284 .. 0.95 Alignments for each domain: == domain 1 score: 65.9 bits; conditional E-value: 1.5e-22 Tektin 187 pgaerldetsstpeeWekftkdnieraekeraasaqLreaidsilkqtandlraqaeavnealrkrieeteeaknkleeqlkk 269 + e+ + ++stpe+ +kft+dn+ ra++er +sa+L +d il++t++dl q++avn a+ +r+ee+e+a++kl+++l+k T383217_1 108 MSFEKRPRSASTPETRTKFTQDNLCRAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLQK 190 566788889************************************************************************98 PP == domain 2 score: 60.1 bits; conditional E-value: 8.6e-21 Tektin 267 lkkvleeiaeleknieeLekaiadkeaplklaqtRlenRtqRpnvElcrDeaqyr 321 +++l+ei+++e+n+ +L++ai+dkeapl +aqtRl ++Rpn+ElcrD+aq+r T383217_1 229 CRQMLREITDQEHNMVALKEAIKDKEAPLHIAQTRLYLLSHRPNMELCRDAAQFR 283 6899*************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 2049.48 // Query: T383217_2 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-12 45.6 0.6 4.4e-12 45.3 0.6 1.0 1 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.3 0.6 2.7e-16 4.4e-12 316 382 .. 340 406 .. 337 407 .. 0.95 Alignments for each domain: == domain 1 score: 45.3 bits; conditional E-value: 2.7e-16 Tektin 316 DeaqyrLveEvkeleetieaLkeklaeaeaslkaLertqleleediavKanslfiDeekclelRksl 382 +++ ++Lv+E++el ++i+aL ekl +ae+sl++Le+ +++le+d+ +nslf+D+++c+ + + + T383217_2 340 EAPSDKLVSELEELYKSITALWEKLLQAEQSLHNLEDIHMSLEKDVTAMTNSLFLDRQNCMAHHTCY 406 57899********************************************************998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 354 (0.0217098); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 2083.64 // Query: T383217_3 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 2016.42 // Query: T250800_1 [L=1591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7341.26 // Query: T250800_2 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.77 # Mc/sec: 5907.43 // Query: T250800_3 [L=1590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 6592.35 // Query: T219668_1 [L=1295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 5529.51 // Query: T219668_2 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 7258.65 // Query: T219668_3 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 5525.24 // Query: T052632_1 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 434 (0.026616); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.60 # Mc/sec: 10184.55 // Query: T052632_2 [L=2136] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2136 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 9120.50 // Query: T052632_3 [L=2135] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2135 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.64 # Mc/sec: 9543.55 // Query: T184891_1 [L=2576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-08 32.3 0.2 9.3e-08 31.5 0.2 1.4 1 CENP-B_N CENP-B N-terminal DNA-binding domain Domain annotation for each model (and alignments): >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 0.2 5.7e-12 9.3e-08 1 45 [. 1053 1097 .. 1053 1103 .. 0.97 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 5.7e-12 SSSSSS--HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHHHHC CS CENP-B_N 1 rkkRrsLTlreKievIqrleegeSkaelarrfnvpestlsdilkn 45 rk+ +sLTl++K+e+I++ e g+ ae+ ++++++ +t+s+++++ T184891_1 1053 RKSQKSLTLNQKLEMIKLGEVGMLNAEISQKLGLLCQTISQVVNA 1097 8999**************************************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 10837.50 // Query: T184891_2 [L=2575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.64 # Mc/sec: 11510.37 // Query: T184891_3 [L=2575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00013 21.8 0.1 0.00025 20.9 0.1 1.4 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain 0.0075 15.7 0.1 0.016 14.7 0.1 1.5 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.1 3.1e-08 0.00025 6 64 .. 1127 1190 .. 1124 1192 .. 0.94 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 3.1e-08 HHHHHHHHHHC.CT---SCHHHHHHHHHHH.....HHSSSCT-TT-S--CHHHHHHHHHTSXXX CS HTH_Tnp_Tc5 6 kaLleWirqlrergapitgelirekAqela.....slaadpkepdfkaSkgWldrFkkRhgikr 64 + L+ W++++ +++p++++li k + ++ ++++ e++ aS +W+ Fk+R+++++ T184891_3 1127 NILVVWMEYQSSHNIPLSQSLIHSKTLVIFnsmkaERGEAAAEDKLEASRSWFMMFKERNHLHN 1190 57999******************************9999999******************9987 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.1 2e-06 0.016 1 59 [. 1259 1316 .. 1259 1329 .. 0.88 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 2e-06 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyk.snrkawltssife 59 k+rlt+ll an a++ kLk ++i++ k a kn + ++ l+v yk n k w+t+++f+ T184891_3 1259 KDRLTLLLVANVADDFKLKAVLIYHTKISTALKN-YANSLLPVLYK*NN-KVWMTAHLFT 1316 689*******************************.999999*9997776.5699988886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.72 # Mc/sec: 10231.44 // Query: T332109_1 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3594.49 // Query: T332109_2 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 3277.33 // Query: T332109_3 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.72 # Mc/sec: 3095.26 // Query: T357987_1 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1099 (0.0673985); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.92 # Mc/sec: 3408.12 // Query: T357987_2 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 900 (0.0551944); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 5806.43 // Query: T357987_3 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 952 (0.0583834); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 4823.80 // Query: T229253_1 [L=2035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.76 # Mc/sec: 7660.25 // Query: T229253_2 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 14.6 0.3 0.024 14.6 0.3 2.2 2 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.3 1.5e-06 0.024 4 29 .. 867 892 .. 866 895 .. 0.92 2 ? -4.5 1.7 1 1.6e+04 37 49 .. 1878 1890 .. 1875 1891 .. 0.82 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.5e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229253_2 867 VWGASCPAPHNPCRLQLELCGPCQKR 892 5**********************976 PP == domain 2 score: -4.5 bits; conditional E-value: 1 Toxin_13 37 caahcivqktsck 49 a c v+k++c+ T229253_2 1878 VEACCCVRKEECN 1890 5689********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.69 # Mc/sec: 8433.23 // Query: T229253_3 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.61 # Mc/sec: 9539.23 // Query: T227490_1 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.26s 00:00:01.34 Elapsed: 00:00:00.54 # Mc/sec: 15104.12 // Query: T227490_2 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.68 # Mc/sec: 11990.24 // Query: T227490_3 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 11647.67 // Query: T172379_1 [L=1141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 5934.92 // Query: T172379_2 [L=1140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 5721.66 // Query: T172379_3 [L=1140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 6039.53 // Query: T367398_1 [L=2803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 701 (0.0429903); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.34s 00:00:01.82 Elapsed: 00:00:00.78 # Mc/sec: 10280.65 // Query: T367398_2 [L=2803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 444 (0.0272292); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.65 # Mc/sec: 12336.78 // Query: T367398_3 [L=2803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 545 (0.0334233); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.81 # Mc/sec: 9899.88 // Query: T212561_1 [L=2479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.24s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 12442.10 // Query: T212561_2 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.59 # Mc/sec: 12015.49 // Query: T212561_3 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.72 # Mc/sec: 9846.02 // Query: T183004_1 [L=3008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.29s 00:00:01.41 Elapsed: 00:00:00.64 # Mc/sec: 13445.90 // Query: T183004_2 [L=3007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.85 # Mc/sec: 10120.61 // Query: T183004_3 [L=3007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 12.0 0.1 13 5.9 0.0 3.2 2 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-te Domain annotation for each model (and alignments): >> MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.0 0.00077 13 4 61 .. 2640 2696 .. 2551 2705 .. 0.84 2 ? 0.5 0.0 0.037 6e+02 5 32 .. 2685 2712 .. 2681 2729 .. 0.80 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00077 HHHHHHHHHHSHHHS--STEEECESB---EE.T.EEE-HHHHHHHTT-TT-EETTEEE CS MurB_C 4 eavlelrasklmvlqpadtpsaGSfFknPvvseevklsaawLIeqaglkGlrlggaav 61 ++v + r+++ v p +t aGS F+ +++ +aa+L ++a ++G r +++ v T183004_3 2640 SRVHAPRRQRVYVRAPESTHLAGSAFTSE-LPSPRTSQAARLRQSARVHGPRRQRVYV 2696 46777888888888888889999999987.5544467899999999999988877766 PP == domain 2 score: 0.5 bits; conditional E-value: 0.037 HHHHHHHHHSHHHS--STEEECESB--- CS MurB_C 5 avlelrasklmvlqpadtpsaGSfFknP 32 +v r+++ v p +t aGS+F+ T183004_3 2685 RVHGPRRQRVYVRAPESTHLAGSTFTSE 2712 56777999999999*999*******985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.61 # Mc/sec: 14102.48 // Query: T209528_1 [L=4460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.4 0.0 0.083 12.6 0.0 1.3 1 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 5.1e-06 0.083 40 67 .. 3130 3157 .. 3123 3160 .. 0.90 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5.1e-06 EEEEEEESSHHHHHHHHHHHTTEEETTE CS RRM_1 40 gfafVeFeskedAekAlealngkklggr 67 ++a++eF+s+ + e+Ale+ +g++++g T209528_1 3130 RIAYIEFKSQAETERALEEKQGTEIDGL 3157 68***********************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.73 # Mc/sec: 17478.50 // Query: T209528_2 [L=4460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.073 12.8 0.0 1.8 8.3 0.0 2.3 2 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom Domain annotation for each model (and alignments): >> RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 0.011 1.8e+02 34 70 .] 793 827 .. 787 827 .. 0.83 2 ? 8.3 0.0 0.00011 1.8 1 24 [. 1152 1175 .. 1152 1189 .. 0.78 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.011 TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS RRM_1 34 etgrskgfafVeFeskedAekAlealngkklggrelk 70 +++++++ ++V+F+s d ekAle l +k+ g e+k T209528_2 793 RREPPRPAGYVNFKSA-DQEKALE-LSDTKVLGYEIK 827 56789999*****986.669****.999999998885 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00011 EEEESETTTSSHHHHHHHHHTTSC CS RRM_1 1 lfVgnLppdvteeeLkelFskfGp 24 l ++nLp vt++eLke+F++ + T209528_2 1152 LLIKNLPDKVTPHELKEVFEDAFQ 1175 679****************98644 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.51u 0.35s 00:00:01.86 Elapsed: 00:00:00.87 # Mc/sec: 14665.86 // Query: T209528_3 [L=4460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.3 0.1 0.00027 20.6 0.1 1.2 1 DUF4371 Domain of unknown function (DUF4371) Domain annotation for each model (and alignments): >> DUF4371 Domain of unknown function (DUF4371) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.1 1.7e-08 0.00027 120 232 .. 3887 4000 .. 3866 4003 .. 0.87 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 1.7e-08 DUF4371 120 knakltspeiqkeiveafakevtksileelgdd.vfallvDesrDvsqkeqlavvlRyvdkkGvvkeRflgvvhvedtts.atLksaidallakhkLs 215 +n +lt + i ++ v+ +a++++ e +++ f++ + D+ + qlav +R vd++ v+e l++v ++ t+s + +++ l k++++ T209528_3 3887 ANIRLTGNIIAQH-VDDMAENLQDRFQEKVKSFvAFSIAAHGNTDINNAPQLAVFIRGVDETFDVTEELLDMVPITGTASgNDIFLCVEKSLKKFNVD 3983 5566666666555.777899999999999988526*******************************************98346899************ PP DUF4371 216 lkkvRGqGYDGasnmrG 232 +k+ DG s m G T209528_3 3984 WSKLVSVSTDGNSAMVG 4000 ***************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 17478.50 // Query: T235847_1 [L=2791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.30s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 11089.69 // Query: T235847_2 [L=2791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.72 # Mc/sec: 11089.69 // Query: T235847_3 [L=2791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 11245.88 // Query: T257780_1 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:00.74 # Mc/sec: 9235.84 // Query: T257780_2 [L=2389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 9362.36 // Query: T257780_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.4 4.7 3 7.4 4.7 1.5 1 Baculo_11_kDa Baculovirus 11 kDa family Domain annotation for each model (and alignments): >> Baculo_11_kDa Baculovirus 11 kDa family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 4.7 0.00018 3 36 82 .. 1609 1655 .. 1603 1657 .. 0.81 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00018 Baculo_11_kDa 36 FvLvicglvvfvvivlfilLlvvilknaeaeeaekekrektllaNld 82 v+v+ ++v++vv+++ ++++ ++ a ++++++ ++++ ll+ l+ T257780_3 1609 TVVVVVTVVMVVVVMMVVVVVAAMMVVAATSSIHHGQYRRCLLSSLG 1655 57888888888888888888889999999999999999999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 679 (0.0416411); expected 326.1 (0.02) Passed bias filter: 285 (0.0174782); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.63 # Mc/sec: 10843.91 // Query: T187866_1 [L=2689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-73 245.5 10.1 1.3e-46 159.0 0.2 3.4 3 Transposase_22 L1 transposable element 1.1e-06 27.9 0.7 2.5e-06 26.8 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.4 4.0 5.9e-20 4.8e-16 1 79 [. 545 619 .. 545 643 .. 0.89 2 ! 29.8 0.0 3.1e-11 2.5e-07 171 205 .. 681 715 .. 676 728 .. 0.89 3 ! 159.0 0.2 1.6e-50 1.3e-46 278 368 .] 800 892 .. 793 892 .. 0.99 Alignments for each domain: == domain 1 score: 58.4 bits; conditional E-value: 5.9e-20 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee 79 +Gkk+ rk++nsk++++s+P+ke+sssPa +++ ++df+elr+e++ + ++y+el+e+i++++ke++ ++k+ + T187866_1 545 MGKKQ---SRKTGNSKTQSASPPPKERSSSPAM--AQSWTENDFDELREEGF-R*SNYSELQEEIRTNGKEVKsFEKKIRR 619 79999...9************************..9***************9.7779****************99998765 PP == domain 2 score: 29.8 bits; conditional E-value: 3.1e-11 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--H CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeql 205 k++k++ slq+ +d+vkrPnl liGv+es++ T187866_1 681 KKIKRNGPSLQETWDYVKRPNLHLIGVPESDVTGR 715 899****************************9765 PP == domain 3 score: 159.0 bits; conditional E-value: 1.6e-50 TEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 278 GkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 GkPirltadlsaetl+arrew+++++ilkek++qPr++yPakls+i++Geik+f d+++lrd+++trPalk+llke ++er++ryq+l++++ T187866_1 800 GKPIRLTADLSAETLQARREWGPIFNILKEKNVQPRISYPAKLSFISEGEIKYFTDRQMLRDFVTTRPALKELLKEalNMERNNRYQPLQKHA 892 9*****************************************************************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.7 3.1e-10 2.5e-06 1 16 [. 2158 2173 .. 2158 2175 .. 0.94 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 3.1e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T187866_1 2158 SFVGTWMKLETIILSK 2173 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 13496.09 // Query: T187866_2 [L=2689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-09 38.3 0.0 2e-09 37.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.2e-07 31.5 1.6 2.3e-07 30.5 1.6 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.6 0.0 2.5e-13 2e-09 1 113 [] 924 1143 .. 924 1143 .. 0.85 Alignments for each domain: == domain 1 score: 37.6 bits; conditional E-value: 2.5e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l + + + + T187866_2 924 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQEIHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILASEKTDFKptkikrdkeghyimv 1013 699****....7778899*******************99998877777768866677888899999**99999999666788899999***999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T187866_2 1014 kgsiqqgeqtilniyapntgaprfikqvlsdlqkdldsqTIIMGDFNTplstldrstrqkvnkdtqelnsalhqtdridiyrtlhpksteytff 1107 9999999*****************************************9999999999999999999999999999888888888888888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T187866_2 1108 svphhtysKIDHIVGSKALLSKCKRTEIITNClSDH 1143 888888888899999985544444444433337888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 1.6 2.9e-11 2.3e-07 2 118 .. 1023 1146 .. 1022 1147 .. 0.77 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 2.9e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ + + ++k++ tf s + T187866_2 1023 TILNIYAPNTG-APRFIKQVLSDLQKDLDS-QTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQTDRIDIyrtLHPKSTeYTFFSVPHh 1112 58899*99999.666666666666667765.79**************9888879*******9999998765334443334334666544444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T187866_2 1113 tYSKIDHIVGSKALLSKckRTEIITNCLSDHSAI 1146 58***************98666779******998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1121 (0.0687477); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 10395.64 // Query: T187866_3 [L=2689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-48 163.3 1.0 7.9e-48 162.7 1.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.9e-38 131.1 3.2 6.3e-38 130.4 3.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.7 1.0 9.7e-52 7.9e-48 1 210 [. 1430 1658 .. 1430 1686 .. 0.95 Alignments for each domain: == domain 1 score: 162.7 bits; conditional E-value: 9.7e-52 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++ k+lnk++a+ ++++++kl+ ++q+gf pg + + ++ ++++++++ k k+++++++D +k Fd+++ ++ l T187866_3 1430 IPKPGrdttkKENFRPISLMNTEAKILNKILANLIQQHIKKLIYHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKTFDKIQQPFML 1527 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++ ++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l re+r++ ++v+l+++aDD++++ ++ T187866_3 1528 KTPNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKRGTRQGCPLSPLLFNIVLEVLAREIRQEKeikgiqlgkEEVKLSLFADDMIVYLENpI 1625 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlfsg 210 ++q+ll+ ++++ k sg+kin +K++++l+++ T187866_3 1626 VSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 1658 77***************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.4 3.2 7.7e-42 6.3e-38 201 280 .. 712 791 .. 711 793 .. 0.98 Alignments for each domain: == domain 1 score: 130.4 bits; conditional E-value: 7.7e-42 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP 280 + e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvt kG P T187866_3 712 DGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRMPQRKSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGSP 791 6799**************************************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 10538.04 // Query: T188371_1 [L=1342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 6398.72 // Query: T188371_2 [L=1342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 6735.50 // Query: T188371_3 [L=1341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 6393.96 // Query: T281915_1 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.71 # Mc/sec: 5971.48 // Query: T281915_2 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 6838.31 // Query: T281915_3 [L=1481] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1481 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 7304.98 // Query: T353474_1 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1426 (0.0874525); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 5336.75 // Query: T353474_2 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1507 (0.09242); expected 326.1 (0.02) Passed bias filter: 350 (0.0214645); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.66 # Mc/sec: 4442.96 // Query: T353474_3 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1548 (0.0949344); expected 326.1 (0.02) Passed bias filter: 338 (0.0207286); expected 326.1 (0.02) Passed Vit filter: 183 (0.0112229); expected 16.3 (0.001) Passed Fwd filter: 52 (0.00318901); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.31s 00:00:01.76 Elapsed: 00:00:00.74 # Mc/sec: 3962.64 // Query: T156453_1 [L=1376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 6248.42 // Query: T156453_2 [L=1376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 7718.63 // Query: T156453_3 [L=1376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 7570.20 // Query: T227239_1 [L=1701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 9181.64 // Query: T227239_2 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 9352.71 // Query: T227239_3 [L=1700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 19.2 1.6 0.0023 18.3 1.6 1.4 1 DUF1117 Protein of unknown function (DUF1117) Domain annotation for each model (and alignments): >> DUF1117 Protein of unknown function (DUF1117) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 1.6 1.4e-07 0.0023 2 29 .. 971 998 .. 970 1073 .. 0.79 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 1.4e-07 DUF1117 2 GltiWRLPGGGfAvGRfsggrregerel 29 Glt+WR+PGGG vG g+r + r l T227239_3 971 GLTVWRVPGGGAGVGQRDGARGKTSRSL 998 9********************9999988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 9176.25 // Query: T352723_1 [L=2916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.057 13.2 3.1 30 4.9 0.1 6.3 3 LSPR Coagulation Factor V LSPD Repeat Domain annotation for each model (and alignments): >> LSPR Coagulation Factor V LSPD Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.1 0.0018 30 1 9 [] 2368 2376 .. 2368 2376 .. 0.93 2 ? 2.4 0.4 0.012 1.9e+02 3 9 .] 2547 2553 .. 2545 2553 .. 0.91 3 ? -0.8 0.0 0.14 2.3e+03 1 9 [] 2553 2561 .. 2553 2561 .. 0.93 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0018 LSPR 1 tLSPDLsQT 9 tLSPD +++ T352723_1 2368 TLSPDPGHV 2376 9******96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.012 LSPR 3 SPDLsQT 9 SPD +QT T352723_1 2547 SPDPGQT 2553 9*****9 PP == domain 3 score: -0.8 bits; conditional E-value: 0.14 LSPR 1 tLSPDLsQT 9 t SP L++T T352723_1 2553 TVSPNLGHT 2561 78******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.24s 00:00:01.12 Elapsed: 00:00:00.49 # Mc/sec: 17024.86 // Query: T352723_2 [L=2915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.53 10.0 5.5 4.9 6.9 0.4 4.0 3 Ephrin_rec_like Putative ephrin-receptor like Domain annotation for each model (and alignments): >> Ephrin_rec_like Putative ephrin-receptor like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.1 0.065 1.1e+03 10 16 .. 204 210 .. 199 216 .. 0.70 2 ? 6.9 0.4 0.0003 4.9 10 33 .. 258 281 .. 252 292 .. 0.87 3 ? 2.3 0.0 0.0081 1.3e+02 13 34 .. 298 319 .. 297 330 .. 0.73 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.065 Ephrin_rec_like 10 tCipCpr 16 C+pCp+ T352723_2 204 ACSPCPH 210 4666665 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0003 Ephrin_rec_like 10 tCipCprgtYqneegqlsClaCPl 33 C+pCpr+ + ++ C++CP T352723_2 258 VCSPCPRHRVLTAGTRTVCSPCPH 281 5**********************5 PP == domain 3 score: 2.3 bits; conditional E-value: 0.0081 Ephrin_rec_like 13 pCprgtYqneegqlsClaCPlg 34 pCpr+ + ++ C++CP+ T352723_2 298 PCPRHLVLTAGTRTVCSPCPRH 319 7777777778888889999954 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.54 # Mc/sec: 15443.18 // Query: T352723_3 [L=2915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.22s 00:00:01.06 Elapsed: 00:00:00.46 # Mc/sec: 18128.96 // Query: T051862_1 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-37 127.9 157.0 2.6e-14 53.0 8.5 15.9 15 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.2 0.065 1.1e+03 38 47 .. 164 173 .. 162 174 .. 0.75 2 ! 8.9 0.0 9.6e-05 1.6 7 35 .. 176 203 .. 175 205 .. 0.94 3 ! 22.6 5.1 5e-09 8.2e-05 4 46 .. 205 246 .. 203 248 .. 0.94 4 ! 19.8 0.6 3.9e-08 0.00064 27 48 .. 324 345 .. 309 345 .. 0.92 5 ! 8.1 5.1 0.00017 2.8 2 42 .. 353 393 .. 353 396 .. 0.90 6 ! 3.1 0.3 0.006 98 2 20 .. 385 403 .. 384 404 .. 0.85 7 ! 28.7 9.5 6.3e-11 1e-06 1 42 [. 405 450 .. 405 452 .. 0.82 8 ! 30.4 11.7 1.8e-11 2.9e-07 5 50 .] 452 508 .. 446 508 .. 0.86 9 ! 4.8 0.6 0.0018 30 33 50 .] 512 529 .. 507 529 .. 0.90 10 ! 13.3 7.7 4.1e-06 0.066 14 50 .] 525 562 .. 513 562 .. 0.79 11 ! 53.0 8.5 1.6e-18 2.6e-14 4 50 .] 570 614 .. 570 614 .. 0.99 12 ? -2.3 6.9 0.31 5e+03 5 27 .. 615 649 .. 615 654 .. 0.77 13 ? 0.9 18.9 0.029 4.8e+02 2 50 .] 645 705 .. 644 705 .. 0.86 14 ? -1.8 0.8 0.21 3.4e+03 14 33 .. 731 747 .. 723 756 .. 0.63 15 ? -2.2 4.7 0.27 4.4e+03 6 42 .. 791 835 .. 788 841 .. 0.72 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.065 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051862_1 164 LPPGSLSRPR 173 5888888885 PP == domain 2 score: 8.9 bits; conditional E-value: 9.6e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaG 35 s +pLq + ++ ++gl rp+ ++Asa+ T051862_1 176 SSQPLQ-TKLMTHNGLFRPIPYVTAASAD 203 679***.*******************996 PP == domain 3 score: 22.6 bits; conditional E-value: 5e-09 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 A as++p q +++ + +gl rps++Lp+ s+Gp+ ++++L P T051862_1 205 ATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPEHSQVSLCCP 246 88*******.******************************887 PP == domain 4 score: 19.8 bits; conditional E-value: 3.9e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rP+s T051862_1 324 SYLPAASPGPELSPVSLYRPRS 345 67******************98 PP == domain 5 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051862_1 353 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 393 788********.***********************9966555 PP == domain 6 score: 3.1 bits; conditional E-value: 0.006 DUF4705 2 gpAPasrrpLqapaslqas 20 +pAPas+ Lqa + l+++ T051862_1 385 DPAPASQPSLQALNFLKST 403 6**********98887776 PP == domain 7 score: 28.7 bits; conditional E-value: 6.3e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppag 42 PgpAPas++pLq ++ l++++l +p ++L++ s p p+a+ T051862_1 405 PGPAPASWWPLQ-AQPLPPVSLYSPNVCLTADSSRPAStslwtPQAK 450 9***********.*****************97665554444555555 PP == domain 8 score: 30.4 bits; conditional E-value: 1.8e-11 DUF4705 5 PasrrpLqa..........pasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 P++++ L+a p l + +glsrps+ Lp+As+Gp++p++gLsrP++ L T051862_1 452 PTFQQLLHAqlppasglfrPMGLiPDNGLSRPSFSLPAASPGPEPPQVGLSRPTCTL 508 778888888888888888855442789**************************9976 PP == domain 9 score: 4.8 bits; conditional E-value: 0.0018 DUF4705 33 saGpklppagLsrPssCL 50 s+Gp l p+ srP sCL T051862_1 512 SPGPALLPGWVSRPDSCL 529 89****99*********9 PP == domain 10 score: 13.3 bits; conditional E-value: 4.1e-06 DUF4705 14 pas.lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 p+s l+ ++l + + L +A +Gp+lp+a+L rP+s L T051862_1 525 PDScLSTTSLDSVPTHLLAALVGPQLPQAKLPRPRSGL 562 5543888999999***********************87 PP == domain 11 score: 53.0 bits; conditional E-value: 1.6e-18 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 APa+r++Lqap+ l+++g+s+p+++Lp++ aGp++p++gLsrP CL T051862_1 570 APALRWHLQAPNGLRSVGSSTPRLGLPATAAGPSCPEVGLSRP--CL 614 9******************************************..97 PP == domain 12 score: -2.3 bits; conditional E-value: 0.31 DUF4705 5 PasrrpLqa............paslqasglsrpsa 27 Pas++ L a p+ lq+s+ + p+a T051862_1 615 PASKQALLAqllpssqppl*aPNFLQPSSEGPPPA 649 78888888788877777888788888888777775 PP == domain 13 score: 0.9 bits; conditional E-value: 0.029 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 gp Pas++p q + l+ +++ p + +++As+G+++ pa++ rPss+L T051862_1 645 GPPPASWWPVQF*hwlenslcrpRPCLPGASPG-PALAPTAASRGQVPacLPAARVRPSSSL 705 899********9*********955666666665.7899*******9988877********98 PP == domain 14 score: -1.8 bits; conditional E-value: 0.21 DUF4705 14 paslqasglsrpsaqLpvAs 33 p++l+ + + s +L++A+ T051862_1 731 PPTLREV---SVSPCLTPAP 747 6666666...3344555554 PP == domain 15 score: -2.2 bits; conditional E-value: 0.27 DUF4705 6 asrrpLqa.............paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL p+ l+ + + s +L++A +p+l++++ T051862_1 791 ASHRPLPR*ersarapcltpaPPMLREV---SVSPCLTPA--PPTLREVS 835 8899998888888988888888888888...334455555..56666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 5012.17 // Query: T051862_2 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-07 31.6 18.4 0.00022 21.2 0.9 16.6 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.9 1.4e-08 0.00022 27 48 .. 163 184 .. 148 184 .. 0.92 2 ! 7.0 6.2 0.00036 5.9 2 42 .. 192 232 .. 192 235 .. 0.90 3 ! 3.3 1.5 0.0054 88 2 32 .. 224 259 .. 223 270 .. 0.65 4 ! 9.1 0.5 8.3e-05 1.4 4 21 .. 323 340 .. 322 363 .. 0.81 5 ? 0.6 2.7 0.038 6.2e+02 1 25 [. 373 396 .. 373 396 .. 0.75 6 ! 10.3 5.6 3.4e-05 0.55 7 36 .. 400 428 .. 398 432 .. 0.90 7 ! 20.7 2.9 2e-08 0.00033 3 36 .. 428 471 .. 426 475 .. 0.93 8 ! 3.7 0.4 0.0041 66 27 39 .. 474 486 .. 472 491 .. 0.85 9 ? 1.6 2.2 0.018 2.9e+02 1 22 [. 481 502 .. 481 516 .. 0.70 10 ! 5.6 5.4 0.0011 17 1 36 [. 523 558 .. 523 558 .. 0.90 11 ! 17.1 0.9 2.6e-07 0.0042 1 26 [. 556 580 .. 556 582 .. 0.95 12 ! 2.9 3.0 0.0071 1.2e+02 1 28 [. 589 626 .. 589 631 .. 0.77 13 ! 4.8 1.7 0.0018 30 7 38 .. 639 669 .. 634 672 .. 0.90 14 ? 1.4 17.2 0.021 3.5e+02 2 26 .. 666 704 .. 665 709 .. 0.61 15 ? 2.0 1.8 0.013 2.2e+02 2 18 .. 700 715 .. 699 721 .. 0.87 16 ? -3.6 6.0 0.79 1.3e+04 4 33 .. 740 779 .. 724 789 .. 0.65 17 ? -1.4 0.8 0.15 2.5e+03 4 14 .. 821 837 .. 821 868 .. 0.65 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p++L rPss T051862_2 163 SYLPAASPGPELSPVSLYRPSS 184 67******************98 PP == domain 2 score: 7.0 bits; conditional E-value: 0.00036 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppag 42 gp P+sr+p q +l++++l+r s+ ++As +p + ++ + T051862_2 192 GPYPTSRQPPQ-MRLLPHNSLHRHSSIVTMASLDPAPaSQPS 232 788********.***********************9966555 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0054 DUF4705 2 gpAPasrrpLqa.....paslqasglsrpsaqLpvA 32 +pAPas+ Lqa ++s + + +qL++A T051862_2 224 DPAPASQPSLQAlnilrSPSVVQGWSVVVLSQLTAA 259 6**********9666664443333333334455555 PP == domain 4 score: 9.1 bits; conditional E-value: 8.3e-05 DUF4705 4 APasrrpLqapaslqasg 21 AP+sr+pLqa + lq+ + T051862_2 323 APTSRQPLQAQNFLQSAS 340 9********977777765 PP == domain 5 score: 0.6 bits; conditional E-value: 0.038 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051862_2 373 TGTAPSLQWPL*tQ---LLPPSLLSRP 396 799*******9744...6777666665 PP == domain 6 score: 10.3 bits; conditional E-value: 3.4e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q +++l g+srps++Lp As p T051862_2 400 SSRPHQ-AQLLHLGGPSRPSLCLPSASTVP 428 679999.*******************9766 PP == domain 7 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGp 36 p as++ L+a p s++ s++ +ps++LpvAs Gp T051862_2 428 PTSASQQILHAqhlphcgppkPSSQPFSSFYTPSSRLPVASSGP 471 55699**************************************9 PP == domain 8 score: 3.7 bits; conditional E-value: 0.0041 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T051862_2 474 SFLTTAFPGPVFP 486 79*********97 PP == domain 9 score: 1.6 bits; conditional E-value: 0.018 DUF4705 1 PgpAPasrrpLqapaslqasgl 22 Pgp +rrpL+a ++l++ ++ T051862_2 481 PGPVFPFRRPLRAQNLLKSASP 502 7888889*****8555555543 PP == domain 10 score: 5.6 bits; conditional E-value: 0.0011 DUF4705 1 PgpAPasrrpLqapaslqas.glsrpsaqLpvAsaGp 36 Pgp Pas++pL ++ l+ s ++ ++ ++L ++s+Gp T051862_2 523 PGPIPASQQPLW-TQCLPISwRPWSAHSFLKPSSPGP 558 9***********.9999855488999********999 PP == domain 11 score: 17.1 bits; conditional E-value: 2.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +l++ g srp T051862_2 556 PGPGQASRWPLQ-DELLPSDGISRPQ 580 9***********.9**********97 PP == domain 12 score: 2.9 bits; conditional E-value: 0.0071 DUF4705 1 PgpAPasrrpLqa..........paslqasglsrpsaq 28 P++++asrr qa pas+q s l + ++ T051862_2 589 PRQGWASRRLPQAqvvlksgspgPASQQVSKLFWLNSC 626 899******66778888888888888887766665555 PP == domain 13 score: 4.8 bits; conditional E-value: 0.0018 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl 38 s + L+ + +l++ gl + s + AsaGp l T051862_2 639 SSQALR-AHLLPPGGLYSSSTGWRTASAGPAL 669 567899.9**********************88 PP == domain 14 score: 1.4 bits; conditional E-value: 0.021 DUF4705 2 gpAPasrrpLqa..............paslqasglsrps 26 gpA as+ pLqa pas+q+ + p+ T051862_2 666 GPALASQGPLQAqllpprrplgakslPASQQPACGPAPP 704 9**********5555555555555555555554444444 PP == domain 15 score: 2.0 bits; conditional E-value: 0.013 DUF4705 2 gpAPasrrpLqapaslq 18 gpAP sr+p +++++ T051862_2 700 GPAPPSRWPVD-AQLMP 715 9********97.88776 PP == domain 16 score: -3.6 bits; conditional E-value: 0.79 DUF4705 4 APasrrpLqa.............paslqasglsrpsaqLpvAs 33 A as rpL p++l+ + + s +L++A+ T051862_2 740 ALASPRPLPRgqrsa*apcltpaPPTLREV---SVSPCLTPAP 779 445555554488888888888888888888...4445666665 PP == domain 17 score: -1.4 bits; conditional E-value: 0.15 DUF4705 4 APasrrpLqa......p 14 A as+rpL + T051862_2 821 ALASHRPLPR*ersv*A 837 78999999656666663 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 5332.10 // Query: T051862_3 [L=875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-23 82.7 142.1 2e-09 37.4 6.3 14.7 13 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 1.5 0.00013 2 4 24 .. 162 182 .. 161 189 .. 0.88 2 ? 1.3 2.1 0.022 3.6e+02 1 25 [. 212 235 .. 212 242 .. 0.80 3 ? -0.2 0.2 0.067 1.1e+03 38 47 .. 324 333 .. 322 334 .. 0.75 4 ! 6.0 0.0 0.00075 12 7 34 .. 336 362 .. 334 364 .. 0.92 5 ! 37.4 6.3 1.2e-13 2e-09 1 49 [. 362 409 .. 362 410 .. 0.97 6 ! 21.7 6.2 9.7e-09 0.00016 1 34 [. 415 447 .. 415 457 .. 0.86 7 ! 12.0 10.4 1e-05 0.17 1 49 [. 458 517 .. 458 518 .. 0.85 8 ! 10.1 14.0 4e-05 0.64 13 42 .. 554 585 .. 496 590 .. 0.75 9 ! 22.5 1.7 5.3e-09 8.7e-05 19 43 .. 618 642 .. 618 642 .. 0.96 10 ? -3.7 0.1 0.85 1.4e+04 46 50 .] 645 649 .. 644 652 .. 0.55 11 ! 10.8 21.9 2.4e-05 0.4 4 50 .] 657 715 .. 656 715 .. 0.90 12 ? 0.0 2.8 0.057 9.3e+02 4 23 .. 772 804 .. 772 827 .. 0.78 13 ? -0.3 1.3 0.074 1.2e+03 13 23 .. 846 869 .. 838 875 .] 0.50 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00013 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T051862_3 162 APTSRQPLQAQNFLQSASTDQ 182 9********999999987655 PP == domain 2 score: 1.3 bits; conditional E-value: 0.022 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T051862_3 212 TGTAPSLQWPL*tQ---LLPPSLLSRP 235 799*******9744...7777766666 PP == domain 3 score: -0.2 bits; conditional E-value: 0.067 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T051862_3 324 LPPGSLSRPR 333 5888888885 PP == domain 4 score: 6.0 bits; conditional E-value: 0.00075 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s +pLq + + ++gl rp+ ++As T051862_3 336 SSQPLQ-TKIMTHNGLFRPIPYVTAAST 362 689***.*************99999996 PP == domain 5 score: 37.4 bits; conditional E-value: 1.2e-13 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 ++ A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T051862_3 362 TDEATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 409 67899*******.************************************ PP == domain 6 score: 21.7 bits; conditional E-value: 9.7e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpA asr+pLq +++l++s++ +ps L+v ++ T051862_3 415 PGPASASRQPLQ-SQRLPHSRFFTPSIYLTVDPP 447 9***********.*****************9554 PP == domain 7 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 ++pAPa+++pLqa ++ ++ gls p+ + +s++ + pp Ls Pss+ T051862_3 458 TRPAPACQWPLQAhgahs*qrpfqAQFFPSGGLSGPR---TSSSRPLQThlhPPCILSGPSSS 517 78**********************9999999999998...45666666667788888888886 PP == domain 8 score: 10.1 bits; conditional E-value: 4e-05 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+As+Gpk +p+g T051862_3 554 ApqAQVRPHGGLSRMSSCPPMASPGPKWSPVG 585 23366679********************9986 PP == domain 9 score: 22.5 bits; conditional E-value: 5.3e-09 DUF4705 19 asglsrpsaqLpvAsaGpklppagL 43 as++++++aqLp A++Gp+l+pa+L T051862_3 618 ASSFGSTPAQLPTAFVGPELSPAKL 642 689********************98 PP == domain 10 score: -3.7 bits; conditional E-value: 0.85 DUF4705 46 PssCL 50 P+sCL T051862_3 645 PTSCL 649 55554 PP == domain 11 score: 10.8 bits; conditional E-value: 2.4e-05 DUF4705 4 APasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 A ++++pLq ++ l+++glsrps+++ Gp++ p +gL+ P sCL T051862_3 657 ALVGEQPLQ-APPLPPRGLSRPSSCPHGGLSGPSPclppsspraaqllPHGGLLMPNSCL 715 899******.88899999999999999999999988999999999999***********8 PP == domain 12 score: 0.0 bits; conditional E-value: 0.057 DUF4705 4 APasrrpLqa.............paslqasgls 23 A as+rpL p++l+ +++s T051862_3 772 ALASHRPLPRgqrsa*apcltpaPPTLREVSPS 804 889*****7778888888888887777777665 PP == domain 13 score: -0.3 bits; conditional E-value: 0.074 DUF4705 13 a.............paslqasgls 23 p++l+ ++ls T051862_3 846 Rgqrsa*apcltpaPPTLREVSLS 869 444444444444445555555443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.47 # Mc/sec: 5326.01 // Query: T148001_1 [L=738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 4589.77 // Query: T148001_2 [L=738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 4398.53 // Query: T148001_3 [L=737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46 # Mc/sec: 4583.55 // Query: T153059_1 [L=5708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.32s 00:00:01.62 Elapsed: 00:00:00.57 # Mc/sec: 28154.51 // Query: T153059_2 [L=5707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.29s 00:00:01.56 Elapsed: 00:00:00.55 # Mc/sec: 29685.01 // Query: T153059_3 [L=5707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.56 # Mc/sec: 28643.43 // Query: T366907_1 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.47 # Mc/sec: 8972.05 // Query: T366907_2 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.47 # Mc/sec: 8972.05 // Query: T366907_3 [L=1474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8785.13 // Query: T272693_1 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8162.12 // Query: T272693_2 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 8332.17 // Query: T272693_3 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8162.12 // Query: T361768_1 [L=2573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-14 54.3 2.0 1.4e-14 54.3 2.0 1.7 2 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.3 0.73 1.2e+04 174 193 .. 106 125 .. 97 128 .. 0.80 2 ! 54.3 2.0 8.6e-19 1.4e-14 2 109 .. 314 413 .. 313 420 .. 0.89 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 0.73 POM121 174 ssptsgssrprKRKipLlps 193 ++ ++srp+ R+ Ll+ T361768_1 106 CPCFRSRSRPHHRRHSLLSV 125 56667899******999975 PP == domain 2 score: 54.3 bits; conditional E-value: 8.6e-19 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361768_1 314 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 406 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkr 109 +g+++ r T361768_1 407 GGFPRG--R 413 ***764..3 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2573 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 13144.49 // Query: T361768_2 [L=2572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 14150.11 // Query: T361768_3 [L=2572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.25s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 13883.12 // Query: T155175_1 [L=2364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 12760.38 // Query: T155175_2 [L=2363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.25s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 13255.18 // Query: T155175_3 [L=2363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 12518.78 // Query: T359405_1 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 6377.27 // Query: T359405_2 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6122.18 // Query: T359405_3 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6122.18 // Query: T325788_1 [L=1718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 9451.74 // Query: T325788_2 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 9824.09 // Query: T325788_3 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 9824.09 // Query: T222268_1 [L=1668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 8836.79 // Query: T222268_2 [L=1668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 7822.73 // Query: T222268_3 [L=1668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 8227.35 // Query: T012475_1 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-07 28.4 0.2 1.7e-06 27.4 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.2 1e-10 1.7e-06 1 19 [] 998 1016 .. 998 1016 .. 0.98 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 1e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012475_1 998 PFAGSWMKLEAIILSKLSQ 1016 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 7096.87 // Query: T012475_2 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-07 28.5 3.0 2.2e-06 27.2 0.0 2.4 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.2 0.013 2.2e+02 8 61 .. 278 340 .. 273 349 .. 0.77 2 ! 27.2 0.0 1.4e-10 2.2e-06 158 222 .] 444 530 .. 419 530 .. 0.82 3 ? -3.6 0.0 0.37 6e+03 10 27 .. 1174 1191 .. 1173 1192 .. 0.89 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.013 -EEE......-THHHHCTB-..-.........-------HHHH.................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellka 61 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k+ T012475_2 278 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINKH 340 7799999999988888888555********************999988887555444444444 PP == domain 2 score: 27.2 bits; conditional E-value: 1.4e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012475_2 444 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 530 256666789***************5555***************************99999988877762256678*********986 PP == domain 3 score: -3.6 bits; conditional E-value: 0.37 EE......-THHHHCTB- CS RVT_1 10 Rpisllsvdykalnklia 27 R++ ll++ +++lnkl++ T012475_2 1174 RTLTLLCTSFRILNKLLH 1191 89999**********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.73 # Mc/sec: 5541.39 // Query: T012475_3 [L=1414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-07 29.6 0.1 6.5e-07 29.0 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.1 4e-11 6.5e-07 31 90 .. 310 373 .. 298 375 .. 0.85 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 4e-11 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012475_3 310 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 373 3577889***********888888899989999999999999*****************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.68 # Mc/sec: 5948.84 // Query: T381520_1 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 7189.94 // Query: T381520_2 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 7760.57 // Query: T381520_3 [L=1709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1709 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 7189.94 // Query: T219810_1 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 6327.20 // Query: T219810_2 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 5747.67 // Query: T219810_3 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 6322.43 // Query: T185132_1 [L=5935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.40s 00:00:02.06 Elapsed: 00:00:00.75 # Mc/sec: 22638.70 // Query: T185132_2 [L=5935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.42s 00:00:02.25 Elapsed: 00:00:00.78 # Mc/sec: 21767.98 // Query: T185132_3 [L=5935] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5935 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.40s 00:00:02.19 Elapsed: 00:00:00.67 # Mc/sec: 25341.83 // Query: T184607_1 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 6639.51 // Query: T184607_2 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5896.49 // Query: T184607_3 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.61 # Mc/sec: 5219.84 // Query: T033526_1 [L=4791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.34s 00:00:01.91 Elapsed: 00:00:00.72 # Mc/sec: 19036.44 // Query: T033526_2 [L=4791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.37s 00:00:01.96 Elapsed: 00:00:00.77 # Mc/sec: 17800.31 // Query: T033526_3 [L=4790] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4790 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.41s 00:00:01.95 Elapsed: 00:00:00.77 # Mc/sec: 17796.59 // Query: T051576_1 [L=4505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.42s 00:00:01.96 Elapsed: 00:00:00.78 # Mc/sec: 16523.13 // Query: T051576_2 [L=4504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:00.82 # Mc/sec: 15713.63 // Query: T051576_3 [L=4504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.88 # Mc/sec: 14642.25 // Query: T353003_1 [L=1125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 4951.44 // Query: T353003_2 [L=1125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 4951.44 // Query: T353003_3 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 5104.08 // Query: T325348_1 [L=2336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-13 51.4 0.2 1.8e-13 50.8 0.2 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.8 0.2 1.1e-17 1.8e-13 16 132 .. 1587 1706 .. 1582 1717 .. 0.80 Alignments for each domain: == domain 1 score: 50.8 bits; conditional E-value: 1.1e-17 TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH.TTHHHHHHHHHC CS RNase_H 16 sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv.knkelaellkel 110 ++++ a++ v+ + +++l+ +++ +aEL A++ aL+ + ++e+ niytDSkY ++ ++ + wk+++ ++++ ++ +k++ ell+++ T325348_1 1587 QQRRNAAYaVVTLL-EVIEARTLPTGTSAEKAELVAFTRALQlS--QGESTNIYTDSKYSFMIVHAHRAIWKERGLLKADNT-EI*YAKQVLELLEAV 1680 45556666444322.23555667799****************55..99**************99999999999999666555.788889********* PP HCSSEEEEEE-SCCSSS....CHHHH CS RNase_H 111 akkkkvqlkhvkgHaGd....pkgNe 132 + +k+ +h++gH++ ++gN+ T325348_1 1681 TASRKIAAMHCPGHKSSdfkpARGNT 1706 **************887577666776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 10778.87 // Query: T325348_2 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-19 69.5 0.8 5.8e-13 48.7 0.1 2.2 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.1 3.8e-08 0.00062 31 67 .. 474 510 .. 473 513 .. 0.87 2 ! 48.7 0.1 3.6e-17 5.8e-13 122 210 .. 565 653 .. 562 654 .. 0.98 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 3.8e-08 Gag_p30 31 iesillthqptwddcqqllqtlltteerqrvlleark 67 + +i+ th ptw d q ll+++lt++er+ vl + k T325348_2 474 VTTIFATHCPTWADVQALLNIMLTADERRLVLDKGEK 510 567999**********************998866555 PP == domain 2 score: 48.7 bits; conditional E-value: 3.6e-17 Gag_p30 122 rptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 rp l kv+e+ q ++e p+ f+e++ + yr+yt dp+dp++ v +++ qsa+ +k + +eg +++ ++l+ a +vyn re T325348_2 565 RPKSLNKVQELQQKPNEDPSEFMEQICQMYRKYTDLDPQDPKNVRMVNMTLTRQSAPRHQKEVPNVEGAMGMNASQLIDIAFNVYNSRE 653 899***********************************************************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 9408.50 // Query: T325348_3 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-15 56.4 0.1 8e-15 54.8 0.0 1.7 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 6.3e-13 48.8 0.0 1.1e-12 48.1 0.0 1.2 1 rve Integrase core domain 0.006 16.0 0.2 0.01 15.3 0.2 1.3 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.43 2.3e+03 126 141 .. 914 929 .. 907 930 .. 0.85 2 ! 54.8 0.0 1.5e-18 8e-15 59 186 .. 1190 1294 .. 1166 1312 .. 0.86 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.43 EEEESB--ST-TTHHH CS RVT_1 126 ryekkglpqGsvlSPl 141 +++ + l+qG++lSP T325348_3 914 LFSFCFLRQGLALSPR 929 577899*********5 PP == domain 2 score: 54.8 bits; conditional E-value: 1.5e-18 ...HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS RVT_1 59 lkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrk 156 + + + ++++ lDlk+aF+ +p +++++ l++++ p++ +++++y++++lpqG+++SP++f ++ + lr+l+ T325348_3 1190 TIFIFLSRDHEWFRVLDLKDAFFCIPANAESQLLFEWTDPET---------------------ATQFQYCWTVLPQGFKNSPTVFGEALAQNLRDLQL 1266 5556677889******************************43.....................56********************************* PP .....TEEECTTEEEEEESSHHHHHHHHHH CS RVT_1 157 rakgvtllrYaDDililskskeelqellea 186 + + +llrYaDD+li+s+ k+e+q + T325348_3 1267 E--NGVLLRYADDLLISSSLKQECQDNTVK 1294 6..89**************99998876555 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.1 0.0 1.9e-16 1.1e-12 33 117 .. 1865 1947 .. 1864 1948 .. 0.96 Alignments for each domain: == domain 1 score: 48.1 bits; conditional E-value: 1.9e-16 rve 33 fsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 s+++ a+++ +e +++v l++++ r+g p++++sDng+ +ts+ ++++ + gi+++++ +++pq+ G Er++ tlk+ T325348_3 1865 LSGWVEAYPYHTEWPTEVVKVQLKNIIPRYGL--PDIIHSDNGPSFTSEITQQVSKTVGIKWKLHSAWKPQSSGQTERMHHTLKT 1947 699**********999999999**99999999..*************************************************95 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.2 1.8e-06 0.01 4 29 .. 447 472 .. 446 478 .. 0.93 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.8e-06 Gag_p30 4 pfsasdlynwktnnpsfsedpqklta 29 pf +sdl nwk+ ps+ e+pqk+t+ T325348_3 447 PFPTSDLLNWKSSSPSYREEPQKMTE 472 9***********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9150.74 // Query: T251536_1 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.7 5.4 8.1 13 4.5 8.1 1.4 1 DUF913 Domain of Unknown Function (DUF913) Domain annotation for each model (and alignments): >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 8.1 0.00078 13 280 315 .. 1012 1049 .. 949 1099 .. 0.54 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.00078 DUF913 280 etkeeek................ssededvemedaeaetesesdeeeeseee 315 ++k+++k + + +++++++++++++ T251536_1 1012 KKKKKKKkkrkkkrkkkrkkkkkE----------K----KKKKKKKKKKKKK 1049 111111111111111111111110..........1....1111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2629 (0.161229); expected 326.1 (0.02) Passed bias filter: 775 (0.0475285); expected 326.1 (0.02) Passed Vit filter: 555 (0.0340366); expected 16.3 (0.001) Passed Fwd filter: 109 (0.00668466); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.00u 0.49s 00:00:03.49 Elapsed: 00:00:01.09 # Mc/sec: 3616.72 // Query: T251536_2 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 765 (0.0469152); expected 326.1 (0.02) Passed bias filter: 289 (0.0177235); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.35s 00:00:01.54 Elapsed: 00:00:00.78 # Mc/sec: 5054.13 // Query: T251536_3 [L=1377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0018 17.7 56.1 0.0018 17.7 56.1 1.7 2 SDA1 SDA1 Domain annotation for each model (and alignments): >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -7.2 5.8 1 1.6e+04 320 336 .. 214 230 .. 210 238 .. 0.48 2 ! 17.7 56.1 1.1e-07 0.0018 77 177 .. 994 1084 .. 968 1134 .. 0.46 Alignments for each domain: == domain 1 score: -7.2 bits; conditional E-value: 1 SDA1 320 hkvkskkkrslrekqka 336 +k k+k+kr+ r k+k+ T251536_3 214 KKKKRKRKRRRRRKEKK 230 33444444333333333 PP == domain 2 score: 17.7 bits; conditional E-value: 1.1e-07 SDA1 77 ekwkeeekkkkreeeeedsddeddeedwevesdddseedseggwidvesdeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 174 +k+k+ee+++++eeeee+ ++e++ee++e e+++++ee++eg+ +ee++e+e+eeeeeeeee++ee+eeeeeeeeee+eeeeeeeeeee+ T251536_3 994 KKKKKEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEGE---------EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEDEEEEEEEEEEEE 1081 333333333333122222.222222222222222222333333.........2222222222222222333333222222222222222222222222 PP SDA1 175 eke 177 e+e T251536_3 1082 EEE 1084 222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1755 (0.107629); expected 326.1 (0.02) Passed bias filter: 723 (0.0443395); expected 326.1 (0.02) Passed Vit filter: 447 (0.0274132); expected 16.3 (0.001) Passed Fwd filter: 188 (0.0115295); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.62u 0.53s 00:00:04.15 Elapsed: 00:00:01.05 # Mc/sec: 3751.77 // Query: T188428_1 [L=5474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 779 (0.0477738); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.35u 0.45s 00:00:02.80 Elapsed: 00:00:00.81 # Mc/sec: 19333.56 // Query: T188428_2 [L=5474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.01u 0.38s 00:00:02.38 Elapsed: 00:00:00.83 # Mc/sec: 18867.69 // Query: T188428_3 [L=5474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6 6.8 5.6 11 6.0 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 5.6 0.00066 11 66 103 .. 2274 2311 .. 2271 2332 .. 0.62 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00066 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188428_3 2274 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2311 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 791 (0.0485098); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.56u 0.45s 00:00:03.01 Elapsed: 00:00:00.81 # Mc/sec: 19333.56 // Query: T155155_1 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 3298.37 // Query: T155155_2 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 3801.51 // Query: T155155_3 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.72 # Mc/sec: 3115.13 // Query: T259001_1 [L=2629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.26s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 11225.56 // Query: T259001_2 [L=2629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.77 # Mc/sec: 9767.69 // Query: T259001_3 [L=2629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.5 6.9 6.6 9.4 5.8 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00057 9.4 6 41 .. 1688 1723 .. 1674 1734 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00057 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T259001_3 1688 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1723 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.70 # Mc/sec: 10744.46 // Query: T184926_1 [L=4203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.79 # Mc/sec: 15220.34 // Query: T184926_2 [L=4203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 27.8 0.3 2.7e-06 26.7 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.3 1.6e-10 2.7e-06 1 16 [. 436 451 .. 436 454 .. 0.94 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 1.6e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T184926_2 436 SFVGTWMKLETIILSK 451 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.58u 0.33s 00:00:01.91 Elapsed: 00:00:00.75 # Mc/sec: 16032.09 // Query: T184926_3 [L=4202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.41s 00:00:01.84 Elapsed: 00:00:00.76 # Mc/sec: 15817.38 // Query: T071095_1 [L=3210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.09 12.9 14.5 18 5.5 0.3 7.1 10 zf-RING_7 C4-type zinc ribbon domain Domain annotation for each model (and alignments): >> zf-RING_7 C4-type zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 0.15 2.4e+03 20 30 .. 1700 1710 .. 1695 1710 .. 0.82 2 ? -2.0 0.0 0.24 4e+03 22 32 .. 1728 1738 .. 1716 1738 .. 0.77 3 ? -2.5 0.0 0.35 5.8e+03 23 32 .. 1755 1764 .. 1747 1764 .. 0.85 4 ? 5.2 0.1 0.0014 23 22 32 .. 1780 1790 .. 1766 1790 .. 0.73 5 ? -2.1 0.0 0.26 4.2e+03 22 32 .. 1806 1816 .. 1794 1816 .. 0.79 6 ? 4.7 0.0 0.0019 31 23 32 .. 1833 1842 .. 1817 1842 .. 0.73 7 ? 5.5 0.3 0.0011 18 21 32 .. 1883 1894 .. 1870 1894 .. 0.74 8 ? -2.4 0.0 0.31 5.1e+03 23 32 .. 1911 1920 .. 1902 1920 .. 0.85 9 ? -2.0 0.1 0.25 4.1e+03 22 30 .. 1936 1944 .. 1923 1944 .. 0.77 10 ? -1.1 0.0 0.12 2e+03 22 32 .. 1962 1972 .. 1949 1972 .. 0.77 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.15 zf-RING_7 20 gdevvtCpeCG 30 + v++C+ CG T071095_1 1700 LGTVARCELCG 1710 4789****998 PP == domain 2 score: -2.0 bits; conditional E-value: 0.24 zf-RING_7 22 evvtCpeCGRI 32 v +C+ GR+ T071095_1 1728 TVTRCERSGRW 1738 399******95 PP == domain 3 score: -2.5 bits; conditional E-value: 0.35 zf-RING_7 23 vvtCpeCGRI 32 v +C+ GR+ T071095_1 1755 VTRCERSGRW 1764 89******95 PP == domain 4 score: 5.2 bits; conditional E-value: 0.0014 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_1 1780 TVARCERCGRW 1790 49********6 PP == domain 5 score: -2.1 bits; conditional E-value: 0.26 zf-RING_7 22 evvtCpeCGRI 32 v +C+ GR+ T071095_1 1806 TVTRCERSGRW 1816 499******95 PP == domain 6 score: 4.7 bits; conditional E-value: 0.0019 zf-RING_7 23 vvtCpeCGRI 32 v++C+ CGR+ T071095_1 1833 VARCERCGRW 1842 9********6 PP == domain 7 score: 5.5 bits; conditional E-value: 0.0011 zf-RING_7 21 devvtCpeCGRI 32 v++C+ CGR+ T071095_1 1883 RTVARCECCGRW 1894 349********6 PP == domain 8 score: -2.4 bits; conditional E-value: 0.31 zf-RING_7 23 vvtCpeCGRI 32 v++C+ GR+ T071095_1 1911 VARCERSGRW 1920 89******95 PP == domain 9 score: -2.0 bits; conditional E-value: 0.25 zf-RING_7 22 evvtCpeCG 30 v++C+ CG T071095_1 1936 TVARCELCG 1944 49****998 PP == domain 10 score: -1.1 bits; conditional E-value: 0.12 zf-RING_7 22 evvtCpeCGRI 32 v++C+ GR+ T071095_1 1962 TVARCERSGRW 1972 49*******95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.36s 00:00:01.67 Elapsed: 00:00:00.88 # Mc/sec: 10435.53 // Query: T071095_2 [L=3210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 15.9 19.0 33 4.6 0.1 8.7 10 zf-RING_7 C4-type zinc ribbon domain Domain annotation for each model (and alignments): >> zf-RING_7 C4-type zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.4 0.0094 1.5e+02 22 31 .. 1719 1728 .. 1709 1728 .. 0.86 2 ? 3.9 0.1 0.0034 55 22 31 .. 1745 1754 .. 1731 1754 .. 0.73 3 ? 2.6 0.0 0.0088 1.4e+02 22 32 .. 1771 1781 .. 1757 1781 .. 0.73 4 ? 3.9 0.1 0.0034 55 22 31 .. 1797 1806 .. 1783 1806 .. 0.73 5 ? -1.1 0.0 0.12 2e+03 22 32 .. 1823 1833 .. 1810 1833 .. 0.77 6 ? 1.9 0.0 0.014 2.4e+02 22 32 .. 1843 1859 .. 1835 1859 .. 0.71 7 ? -1.1 0.0 0.12 2e+03 22 32 .. 1875 1885 .. 1862 1885 .. 0.77 8 ? -0.2 0.0 0.064 1e+03 23 30 .. 1902 1909 .. 1887 1909 .. 0.72 9 ? -3.0 0.0 0.5 8.1e+03 23 32 .. 1928 1937 .. 1916 1937 .. 0.78 10 ? 4.6 0.1 0.002 33 22 32 .. 1953 1963 .. 1943 1963 .. 0.83 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.0094 zf-RING_7 22 evvtCpeCGR 31 v +C+ CGR T071095_2 1719 TVTRCERCGR 1728 499******9 PP == domain 2 score: 3.9 bits; conditional E-value: 0.0034 zf-RING_7 22 evvtCpeCGR 31 v++C+ CGR T071095_2 1745 TVARCERCGR 1754 49*******9 PP == domain 3 score: 2.6 bits; conditional E-value: 0.0088 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_2 1771 TVARCELCGRW 1781 49********6 PP == domain 4 score: 3.9 bits; conditional E-value: 0.0034 zf-RING_7 22 evvtCpeCGR 31 v++C+ CGR T071095_2 1797 TVARCERCGR 1806 49*******9 PP == domain 5 score: -1.1 bits; conditional E-value: 0.12 zf-RING_7 22 evvtCpeCGRI 32 v++C+ GR+ T071095_2 1823 TVARCERSGRW 1833 49*******95 PP == domain 6 score: 1.9 bits; conditional E-value: 0.014 zf-RING_7 22 e......vvtCpeCGRI 32 + v++C+ CGR+ T071095_2 1843 Qm*alrmVARCELCGRW 1859 455555589*******6 PP == domain 7 score: -1.1 bits; conditional E-value: 0.12 zf-RING_7 22 evvtCpeCGRI 32 v++C+ GR+ T071095_2 1875 TVARCERSGRW 1885 49*******95 PP == domain 8 score: -0.2 bits; conditional E-value: 0.064 zf-RING_7 23 vvtCpeCG 30 v++C+ CG T071095_2 1902 VARCERCG 1909 99*****9 PP == domain 9 score: -3.0 bits; conditional E-value: 0.5 zf-RING_7 23 vvtCpeCGRI 32 v +C+ GR+ T071095_2 1928 VTRCERSGRW 1937 79******95 PP == domain 10 score: 4.6 bits; conditional E-value: 0.002 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_2 1953 TVARCERCGRW 1963 49********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.27s 00:00:01.45 Elapsed: 00:00:00.64 # Mc/sec: 14348.85 // Query: T071095_3 [L=3209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-07 31.7 28.1 1.2 9.3 0.1 10.6 11 zf-RING_7 C4-type zinc ribbon domain Domain annotation for each model (and alignments): >> zf-RING_7 C4-type zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 0.0 0.058 9.5e+02 13 31 .. 1692 1719 .. 1685 1719 .. 0.65 2 ! 9.3 0.1 7.3e-05 1.2 22 32 .. 1736 1746 .. 1722 1746 .. 0.74 3 ! 5.5 0.1 0.0011 18 22 32 .. 1762 1772 .. 1748 1772 .. 0.74 4 ! 4.8 0.1 0.0018 30 22 32 .. 1788 1798 .. 1776 1798 .. 0.80 5 ! 5.5 0.1 0.0011 18 22 32 .. 1814 1824 .. 1800 1824 .. 0.74 6 ? -1.6 0.0 0.18 2.9e+03 16 30 .. 1829 1848 .. 1826 1848 .. 0.65 7 ! 5.1 0.1 0.0014 23 22 32 .. 1866 1876 .. 1854 1876 .. 0.80 8 ! 2.5 0.0 0.0093 1.5e+02 22 32 .. 1892 1902 .. 1878 1902 .. 0.72 9 ? 0.7 0.1 0.035 5.8e+02 21 30 .. 1917 1926 .. 1904 1926 .. 0.73 10 ! 3.5 0.0 0.0048 78 22 32 .. 1938 1954 .. 1930 1954 .. 0.71 11 ! 5.5 0.3 0.0011 17 21 32 .. 1969 1980 .. 1956 1980 .. 0.74 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 0.058 zf-RING_7 13 vlselragde.........vvtCpeCGR 31 v+s+++ +++ v++C+ GR T071095_3 1692 VWSASDSAGDggqm*alwtVARCERSGR 1719 34444444335569999999****9999 PP == domain 2 score: 9.3 bits; conditional E-value: 7.3e-05 zf-RING_7 22 evvtCpeCGRI 32 v++C++CGR+ T071095_3 1736 TVARCEHCGRW 1746 39********6 PP == domain 3 score: 5.5 bits; conditional E-value: 0.0011 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_3 1762 TVARCERCGRW 1772 39********6 PP == domain 4 score: 4.8 bits; conditional E-value: 0.0018 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_3 1788 TVARCERCGRW 1798 49********6 PP == domain 5 score: 5.5 bits; conditional E-value: 0.0011 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_3 1814 TVARCERCGRW 1824 39********6 PP == domain 6 score: -1.6 bits; conditional E-value: 0.18 zf-RING_7 16 elrag.....devvtCpeCG 30 ++++g v++C+ CG T071095_3 1829 AVDGGqm*alRTVARCELCG 1848 5555544444559****998 PP == domain 7 score: 5.1 bits; conditional E-value: 0.0014 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_3 1866 TVARCERCGRW 1876 39********6 PP == domain 8 score: 2.5 bits; conditional E-value: 0.0093 zf-RING_7 22 evvtCpeCGRI 32 v++C+ CGR+ T071095_3 1892 TVARCELCGRW 1902 39********6 PP == domain 9 score: 0.7 bits; conditional E-value: 0.035 zf-RING_7 21 devvtCpeCG 30 v++C+ CG T071095_3 1917 RTVARCERCG 1926 349******9 PP == domain 10 score: 3.5 bits; conditional E-value: 0.0048 zf-RING_7 22 e......vvtCpeCGRI 32 + v +C+ CGR+ T071095_3 1938 Qm*alwmVTRCERCGRW 1954 455555589*******6 PP == domain 11 score: 5.5 bits; conditional E-value: 0.0011 zf-RING_7 21 devvtCpeCGRI 32 v++C+ CGR+ T071095_3 1969 RTVARCECCGRW 1980 349********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.39s 00:00:01.70 Elapsed: 00:00:00.82 # Mc/sec: 11195.61 // Query: T316853_1 [L=1451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1451 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1213 (0.0743898); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.66 # Mc/sec: 6289.49 // Query: T316853_2 [L=1450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.7 6.5 8.4 21 5.1 0.1 3.6 4 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.1 0.21 3.5e+03 23 36 .. 579 592 .. 578 592 .. 0.90 2 ? 5.1 0.1 0.0013 21 15 36 .. 646 666 .. 644 666 .. 0.91 3 ? 3.4 0.2 0.0044 73 16 36 .. 693 712 .. 692 712 .. 0.90 4 ? 0.8 0.0 0.028 4.5e+02 18 36 .. 740 758 .. 737 758 .. 0.88 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.21 HTH_Mga 23 ldelakeLglselt 36 l +++++L+++++t T316853_2 579 LAHIKTQLHTTSKT 592 679********997 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0013 HTH_Mga 15 teneksltldelakeLglselt 36 t+ ++ ltl++++++L+++++t T316853_2 646 TQ-RPKLTLTHIKTQLHTTSKT 666 66.999**************98 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0044 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316853_2 693 Q-RPKLTLTHVKTQLHTTSKT 712 5.789**************98 PP == domain 4 score: 0.8 bits; conditional E-value: 0.028 HTH_Mga 18 eksltldelakeLglselt 36 ++ lt ++++++L+++++t T316853_2 740 RPKLTFTHIKTQLHTTSKT 758 6789999**********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2057 (0.12615); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.19u 0.44s 00:00:02.63 Elapsed: 00:00:00.91 # Mc/sec: 4558.47 // Query: T316853_3 [L=1450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1450 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1435 (0.0880044); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.65 # Mc/sec: 6381.85 // Query: T051968_1 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.59 # Mc/sec: 3888.79 // Query: T051968_2 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 3641.88 // Query: T051968_3 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.59 # Mc/sec: 3883.94 // Query: T182466_1 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.63 # Mc/sec: 10149.14 // Query: T182466_2 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 11417.78 // Query: T182466_3 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.049 13.2 0.5 0.09 12.3 0.5 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.5 5.5e-06 0.09 6 15 .. 559 568 .. 556 568 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.5e-06 DUF1725 6 WMELEnIILS 15 WM LEnI+LS T182466_3 559 WMNLENIMLS 568 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 10656.59 // Query: T174277_1 [L=4470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-13 50.3 51.4 1.7e-07 31.6 14.7 5.0 6 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 9.9 1.1e-10 1.8e-06 35 90 .. 515 572 .. 474 573 .. 0.86 2 ? -3.4 0.3 0.83 1.4e+04 3 18 .. 596 611 .. 576 613 .. 0.58 3 ? -7.6 3.6 1 1.6e+04 69 84 .. 2425 2444 .. 2420 2448 .. 0.32 4 ! 31.6 14.7 1e-11 1.7e-07 2 91 .] 2559 2647 .. 2558 2649 .. 0.77 5 ? -7.1 3.7 1 1.6e+04 43 63 .. 2687 2710 .. 2684 2716 .. 0.58 6 ! 25.0 10.7 1.2e-09 1.9e-05 8 79 .. 3370 3440 .. 3370 3451 .. 0.81 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.1e-10 FAM27 35 mreialwatGtirPkththtgthtqtdRereRnrqrl...RdrerRen....grhtrthartk 90 ++++++a+Gt++P + th qtdR+ +R+r+++ R+r+ Re rht th++t+ T174277_1 515 CKKPPSGAKGTCVPAN-----THAQTDRDSNRERRKE*eaRERDIRERhkwaHRHTDTHTHTH 572 5789************.....**************9666688887777567789999999987 PP == domain 2 score: -3.4 bits; conditional E-value: 0.83 FAM27 3 tPkadprrkrLttglm 18 P+++pr++r + g++ T174277_1 596 SPRLQPRGERAAHGHT 611 4555555555555554 PP == domain 3 score: -7.6 bits; conditional E-value: 1 FAM27 69 qrlRd..rerRen..grhtr 84 q +R+ e R++ r+ + T174277_1 2425 QSKREdrAEARDQqdWRQCH 2444 22222212223221233333 PP == domain 4 score: 31.6 bits; conditional E-value: 1e-11 FAM27 2 htPkadprrkrLttglmtqaetkkeaeqkrqa.amreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartkt 91 h Pk++p++krL+tg++tq et++ea+ +r+ + r+ +l ++ + +t h+ t + + + ++ +R+ + R+ ht th +t+t T174277_1 2559 HKPKLEPPGKRLPTGHTTQVETRGEAD-HRKG*RGRNHPLVQRAPVSQQTRRHRWTEIVKESDGK-SEKGEREISERDISGHTDTHRHTHT 2647 89*************************.6666778999999999998888777665555544444.3456889888888666666666665 PP == domain 5 score: -7.1 bits; conditional E-value: 1 FAM27 43 tGtirPkth...thtgthtqtdRe 63 +G+ P++h t th +t R T174277_1 2687 HGQTCPRHHkgtTFGETHGHTVRT 2710 677788886222233356666554 PP == domain 6 score: 25.0 bits; conditional E-value: 1.2e-09 FAM27 8 prrkrLttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtq..tdRereRnrqrlRdrerRen 79 p++kr+t g+mtq+e ++e +qk+++ r+ ++ ++P t th th + ++ +r+R + R+r+ ++ T174277_1 3370 PPGKRMTPGHMTQTEMRGETHQKKGQGTRNRPSLP---MHPNTRTHPRTHGRklVESDRRRMKTEIRERDTTQT 3440 89****************************99975...789999999998753367788888888888776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.81 # Mc/sec: 15787.54 // Query: T174277_2 [L=4470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-11 41.9 36.3 3.8e-09 36.8 17.9 4.1 3 FAM27 FAM27 D and E protein family ------ inclusion threshold ------ 0.023 14.6 6.6 0.0079 16.1 1.7 2.6 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.8 17.9 4.7e-13 3.8e-09 2 91 .] 482 572 .. 481 573 .. 0.69 2 ! 22.3 10.4 1.5e-08 0.00013 32 91 .] 2588 2648 .. 2581 2648 .. 0.92 3 ? -14.2 11.6 2 1.6e+04 66 81 .. 2829 2844 .. 2816 2848 .. 0.58 Alignments for each domain: == domain 1 score: 36.8 bits; conditional E-value: 4.7e-13 FAM27 2 htPkadprrkrLttglmtqaetkkeaeqkrq..aamreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRen..grhtrthartkt 91 h Pk++p++krL+tg++tq et++ea+ k++ a+ + +a a + +t th+ t t+ + + ++r+R+ + R+ ++t+th++t+t T174277_2 482 HKPKLEPPGKRLPTGHTTQEETRGEADHKKG*cARNHPPAQRAP--VSQQTRTHRRTEIVTESDGKS-EKREREISERDIsgHTDTQTHTHTHT 572 89*************************88877455444444444..445555565555555555544.45678877777655567777777776 PP == domain 2 score: 22.3 bits; conditional E-value: 1.5e-08 FAM27 32 qaamreialwatGtirPkththtgthtqt..dRereRnrqrlRdrerRen..grhtrthartkt 91 +a++ e++lw++G++ P + h gt q +R eR +r+R+r +Re+ g++t+t ++t+t T174277_2 2588 KADVGETTLWCKGHLCPSK--HAGTDGQR**KRAMERA-RRERERYQRET*vGTQTHTDTHTHT 2648 57899**************..99*****9**9****97.689***************9999997 PP == domain 3 score: -14.2 bits; conditional E-value: 2 FAM27 66 RnrqrlRdrerRengr 81 R +rlR r++R +r T174277_2 2829 RRWRRLRRRRQRSPRR 2844 3444555555544433 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 16.1 1.7 9.6e-07 0.0079 2 16 .. 1950 1964 .. 1949 1965 .. 0.95 2 ? -0.5 0.2 0.17 1.4e+03 11 17 .. 1981 1987 .. 1981 1988 .. 0.91 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 9.6e-07 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +Cy+C++ H+a++C T174277_2 1950 ACYKCQKSDHQAKEC 1964 7************** PP == domain 2 score: -0.5 bits; conditional E-value: 0.17 STTTTST CS zf-CCHC 11 HiardCp 17 H+++dC+ T174277_2 1981 HWKSDCS 1987 ******7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.70u 0.40s 00:00:02.10 Elapsed: 00:00:00.94 # Mc/sec: 13604.16 // Query: T174277_3 [L=4470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00027 21.3 11.1 0.00027 21.3 11.1 5.2 5 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.1 0.071 1.2e+03 26 53 .. 83 111 .. 73 118 .. 0.78 2 ! 7.7 21.1 0.00029 4.7 29 91 .] 508 571 .. 485 571 .. 0.77 3 ? -7.3 3.6 1 1.6e+04 43 62 .. 610 632 .. 608 638 .. 0.58 4 ! 21.3 11.1 1.7e-08 0.00027 36 89 .. 2592 2647 .. 2586 2650 .. 0.81 5 ? -3.5 8.0 0.92 1.5e+04 49 78 .. 3406 3436 .. 3356 3452 .. 0.65 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.071 FAM27 26 eaeqkrqaamreialwat.GtirPkthth 53 + ++rq+++r a+ +t Gt++P++h T174277_3 83 DTGKERQRRVRAGASVSTcGTVVPQEHMQ 111 5566899999988776544*******975 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00029 FAM27 29 qkrqaamreialwatGtirPkththtgthtqtdRer..eRnrqr...lRdrerRen..grhtrthartkt 91 r+a+++e++l ++G++ P + h +td +r +R + r +R+r +Re+ g++t++h++t+t T174277_3 508 TTRKADVQETTLRRKGHLCPSK------HARTDGQR**QRATERvrsERERYQRET*vGTQTHRHTHTHT 571 5799******************......555555555544444411177899****************98 PP == domain 3 score: -7.3 bits; conditional E-value: 1 FAM27 43 tGtirPkth...thtgthtqtdR 62 +G+ P++h t th +t R T174277_3 610 HGQTCPRHHkgtTFGETHGHTVR 632 68888888632223346666665 PP == domain 4 score: 21.3 bits; conditional E-value: 1.7e-08 FAM27 36 reialwatGtirPkththtgthtqtdRereRnrqrlRd...rerRen....grhtrthart 89 +++++a+Gt++P + t q+dR+ +R+r ++R+ r+ Re rht+th++t T174277_3 2592 EKPPSGAKGTCVPAN-----TQAQMDRDSKRERWKEREgreRDIRERhkwaHRHTQTHTHT 2647 5799***********.....99**************9987755555534467788888876 PP == domain 5 score: -3.5 bits; conditional E-value: 0.92 FAM27 49 kththtgthtqtdRere....RnrqrlRdrerRe 78 +hth +ht+t+ re + R++++R T174277_3 3406 SQHTHAPAHTRTETGRE**teNE---NRNKRKRH 3436 46888888888877665442122...23334443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.48u 0.34s 00:00:01.82 Elapsed: 00:00:00.72 # Mc/sec: 17760.99 // Query: T184614_1 [L=1256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.71 # Mc/sec: 5060.85 // Query: T184614_2 [L=1256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 5703.50 // Query: T184614_3 [L=1256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 5362.99 // Query: T006034_1 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5287.24 // Query: T006034_2 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.77 # Mc/sec: 3707.93 // Query: T006034_3 [L=998] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (998 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 4839.17 // Query: T316410_1 [L=5013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.83 # Mc/sec: 17278.72 // Query: T316410_2 [L=5013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.28s 00:00:01.90 Elapsed: 00:00:00.69 # Mc/sec: 20784.55 // Query: T316410_3 [L=5013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.29s 00:00:01.46 Elapsed: 00:00:00.55 # Mc/sec: 26075.17 // Query: T183083_1 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 2985.99 // Query: T183083_2 [L=501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0014 18.7 2.0 11 6.2 0.0 3.4 3 AMPKBI 5'-AMP-activated protein kinase beta subunit, inter Domain annotation for each model (and alignments): >> AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.0 0.00067 11 9 61 .. 298 351 .. 294 355 .. 0.83 2 ! 6.2 0.0 0.00072 12 9 53 .. 368 411 .. 363 421 .. 0.84 3 ! 3.9 0.1 0.0036 59 9 53 .. 436 481 .. 431 491 .. 0.81 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00067 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikngvlavgctt 61 Pp L+++ l++ss+s++ + +++ + P + ++HL ++ + + l +t T183083_2 298 PPSLRRLPLQRSSTSSSRQDRETHSITAPlSSTAIQHLQQQAGQGDALHHCTTF 351 99*********999999999999999999456789***9999998887766655 PP == domain 2 score: 6.2 bits; conditional E-value: 0.00072 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikng 53 Pp L++ l++ s+s+a + d+ + p P+ ++HL ++ + + T183083_2 368 PPSLHHFPLQRFSTSTAGQGDTLHPAP-PSSTAIQHLQQQAGQGD 411 99*********8888877777777777.*********99887765 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0036 AMPKBI 9 PphLekvllnkssdsaassaddssvlpiP.nhvvLnHLltssikng 53 Pp L++ l++ss+s++ + ++ + P + ++HL ++ + + T183083_2 436 PPSLHHFPLQRSSTSSSRQDRETPSITAPlSSTAIQHLQQQAGQGD 481 99*********88888888888888888845678999998887765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.46 # Mc/sec: 3115.82 // Query: T183083_3 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.46 # Mc/sec: 3109.60 // Query: T155128_1 [L=1417] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1417 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8273.05 // Query: T155128_2 [L=1416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 8267.21 // Query: T155128_3 [L=1416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8267.21 // Query: T138096_1 [L=1603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 9553.98 // Query: T138096_2 [L=1603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.49 # Mc/sec: 9359.00 // Query: T138096_3 [L=1603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 9757.26 // Query: T343479_1 [L=4600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.0 0.1 0.018 14.4 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 1.1e-06 0.018 180 222 .] 4427 4485 .. 4418 4485 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.1e-06 HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 180 lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +q+ll+ ++++ k sg+kin +K++++l s+ s+++kyLG++l T343479_1 4427 AQNLLKLISNFSKVSGYKINVQKSQAFLNtnnrqtesqimSElpftiASKRIKYLGIQL 4485 899************************88999888877661156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.26s 00:00:01.35 Elapsed: 00:00:00.51 # Mc/sec: 25803.56 // Query: T343479_2 [L=4600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-35 123.0 0.6 1.8e-35 122.3 0.6 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 7.8e-07 29.2 0.0 1.4e-06 28.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 122.3 0.6 2.2e-39 1.8e-35 1 177 [. 4229 4423 .. 4229 4451 .. 0.93 Alignments for each domain: == domain 1 score: 122.3 bits; conditional E-value: 2.2e-39 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+ +++ ++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T343479_2 4229 IPKPGrdttkKENFRPISLMNIDAKILNKILANGIQQQIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 4326 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHH...HHHHHTT-T............TEEECTTEEEEEESSH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlf...mnellrelrkra......kgvtllrYaDDililsksk 177 ++l++++++ + +++i+++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++ + +++r+ r+ ++v+l+++aDD++++ +++ T343479_2 4327 KTLNKLGIDGTYLKIIRAINDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNRVl*vLARAIRQEREIKgiqlgkEEVKLYLFADDMIVYLENP 4423 ********************************99**********************733369999999986699*******************9984 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.0 1.7e-10 1.4e-06 3 113 .] 3725 3942 .. 3722 3942 .. 0.84 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.7e-10 EEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 3 wNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 Nvng ++ + ++ +la+++k++++ v +qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T343479_2 3725 INVNG----LNVPIKRHRLANWIKSQEPSVCYIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghyimvkg 3814 46777....8889999*******************998887776666688666778888999999*9999999966677889999999999999 PP .....................................EEEEEE-SS................................................ CS .....................................xxxxxxxxx................................................ RF Exo_endo_phos 78 .....................................vivlGDfNa................................................ 86 i +GDfN+ T343479_2 3815 siqqeeltilniyapntgaprfikqvlsdlqrdldshTITMGDFNTplstldrstrqkvnkdiqelnsaphqadlidiyrtlhpksteytffsa 3908 9999999999999999999999999999999999999999******999999999999999999999999999999999999999999999999 PP ......-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ......xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ......rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T343479_2 3909 phhtcsKIDHILGSKALLSKCKRTEIITNClSDH 3942 99999999******95555444444443337888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 729 (0.0447075); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.31s 00:00:01.64 Elapsed: 00:00:00.57 # Mc/sec: 22689.34 // Query: T343479_3 [L=4599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-137 455.8 20.8 1.2e-136 455.3 20.8 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.015 15.4 10.2 0.027 14.5 10.2 1.3 1 ATG16 Autophagy protein 16 (ATG16) 0.021 14.5 9.8 0.042 13.5 9.8 1.4 1 IncA IncA protein 0.28 11.7 5.3 0.58 10.6 5.3 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 1 10.0 7.2 3.2 8.4 7.2 1.8 1 Occludin_ELL Occludin homology domain 1.2 9.5 5.6 2.7 8.4 5.6 1.5 1 Spectrin Spectrin repeat 1.7 8.8 7.7 3.9 7.6 7.7 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 455.3 20.8 5e-140 1.2e-136 1 368 [] 3353 3688 .. 3353 3688 .. 0.98 Alignments for each domain: == domain 1 score: 455.3 bits; conditional E-value: 5e-140 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e+++ ++y++l+e+i+++ ke++ ++k+++e ntek+lk T343479_3 3353 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRGSNYSKLQEEIQTERKEVKnFEKNLDEyitritNTEKCLK 3440 79999...9************************..*************************************9*******9999999999998 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqs 179 el+elk+k++el++e++ sl+sr+++leervs +ede++e++re+k+rekr++ ++qs T343479_3 3441 ------------------ELMELKAKARELHEECR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIR-NKQS 3496 ..................9****************..................*********************************97.89** PP HHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH.HHHHHHHHHHHH CS Transposase_22 180 lqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl.nkdkilkavrek 271 lq+i+d+vkrPnlrliGv+es+ e+++klenil++ii+e fPnl+++an++iqei+r P+r++s+ra++rhiivr+tk +k+k+l+++rek T343479_3 3497 LQEIWDYVKRPNLRLIGVPESDGENGTKLENILQDIIQEKFPNLARQANIQIQEIQRMPQRYSSRRATARHIIVRFTK-V*MKEKMLRTAREK 3588 *****************************************************************************9.5559********** PP S-EEETTEEEEEEE---HHHHHHHHHHH.HHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt.dviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 G vt kGkPirl adl aetl+arr + ++++il+ek+fqPr+++Pakls+i++ eik+f dk++lrd+++trPalk+llke ++er+++y T343479_3 3589 GWVTHKGKPIRLMADLLAETLQARRGGGrPIFNILREKNFQPRISHPAKLSFISEEEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNQY 3681 *************************97659*************************************************************** PP XXXXXXX CS Transposase_22 362 qaleqar 368 q+l++++ T343479_3 3682 QPLQNHA 3688 *****96 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 10.2 1.2e-05 0.027 34 153 .. 3364 3481 .. 3325 3484 .. 0.66 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.2e-05 ATG16 34 leaenaklekaaasatssksskaskksakeelasssq...............snskqsakiasleqklaqlreelaelyksrgelaqrllelne...e 113 ++++a+ ++ k ++++ + ++ + ++ ++l++++++ r+e+++ k e +r++++++ e T343479_3 3364 SKKQSAS---------------PPPKERSSS-----PameqswmendfdelrEEGFRGSNYSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKclkE 3441 1111111...............111111112.....12334455666777777777888999999999999999999999999999999999972224 PP ATG16 114 lqkleeklkedeerlaeleaeraaleeklkdreeelreke 153 l +l++k++e e+ ++l++++++lee+++ e+e++e + T343479_3 3442 LMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEMK 3481 5556778899999999999999999999999999998865 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 9.8 1.8e-05 0.042 76 165 .. 3377 3490 .. 3351 3506 .. 0.73 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.8e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++++ e+ l++ +r+ +e++lk+l e + + + ++ +++ sl++++ +l++++ T343479_3 3377 SsspameqswmendfdelreegfrgsnySKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKELMELKAKAR----ELHEECRSLRSRCNQLEERV 3470 23444666677777777888899999999*************************************99999999....77777777777777777777 PP IncA 147 relr.elsdlkeevqelrse 165 + ++ e ++ k+e + +++ T343479_3 3471 SVMEdEMNEMKREGKFREKR 3490 77774444444433333333 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 5.3 0.00025 0.58 5 83 .. 3406 3489 .. 3403 3505 .. 0.72 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00025 Syntaxin-6_N 5 evkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsr 83 + +ee+q k++++ e+ ++++ +++ ++++ ++ el+ +eL++++rs++ ++Lee v+++e + +++k + k ++ T343479_3 3406 KLQEEIQterKEVKNFEKNLDEYiTRITNTEKClKELMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEMKREGKFREK 3489 5666776222567777777777766766666657799*******************************9866555544443333 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 7.2 0.0014 3.2 24 95 .. 3404 3476 .. 3401 3499 .. 0.61 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0014 Occludin_ELL 24 YkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKkl 95 Y++l++e+++ +k+++++e++l+e+ ++ ++++k +e l e+k + + ++e ++ + rc++L+e+ s++ T343479_3 3404 YSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKE-LMELKAKARelHEECRSLRSRCNQLEERVSVMEDE 3476 66666666666666666666666666666666666666.44444444435666666666666666666555443 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 5.6 0.0012 2.7 36 102 .. 3411 3476 .. 3382 3507 .. 0.59 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0012 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Spectrin 36 vqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqk 102 +q+ k+ k +e++l+++ +r+++ ++ ++l++ + ++ e++e + l++r +L+e++ ++++ T343479_3 3411 IQTERKEVKNFEKNLDEYITRITNTEKCLKELMEL-KAKARELHEECRSLRSRCNQLEERVSVMEDE 3476 44444466666666666666666666666666555.3555566666666666666666655544443 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 7.7 0.0017 3.9 6 100 .. 3386 3480 .. 3383 3483 .. 0.90 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0017 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 ++ +++++++e + +++++ +e+ ++ ++ ++ l+e ++ + k +++++ k++a el +e ++l + ++le++++ +e+e++++ T343479_3 3386 WMENDFDELREEGFRGSNYSKLQEEIQTERKEVKNFEKNLDEYITRITNTEKCLKELMELKAKARELHEECRSLRSRCNQLEERVSVMEDEMNEM 3480 67788999998886444888889999999999***********************************************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 756 (0.0463633); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.59 # Mc/sec: 22299.93 // Query: T034386_1 [L=646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45 # Mc/sec: 4106.88 // Query: T034386_2 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3844.24 // Query: T034386_3 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3765.79 // Query: T028856_1 [L=8298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.34s 00:00:02.06 Elapsed: 00:00:00.62 # Mc/sec: 38288.98 // Query: T028856_2 [L=8298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.36s 00:00:02.10 Elapsed: 00:00:00.61 # Mc/sec: 38916.67 // Query: T028856_3 [L=8298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.35s 00:00:02.06 Elapsed: 00:00:00.66 # Mc/sec: 35968.44 // Query: T315666_1 [L=1315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7098.10 // Query: T315666_2 [L=1315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.7 6.0 23 5.1 0.2 3.4 4 MSG Major surface glycoprotein Domain annotation for each model (and alignments): >> MSG Major surface glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.2 0.0014 23 5 37 .. 675 707 .. 671 714 .. 0.90 2 ? 4.1 0.1 0.003 49 6 37 .. 704 735 .. 703 739 .. 0.92 3 ? 3.4 0.1 0.0049 79 6 37 .. 718 749 .. 713 753 .. 0.90 4 ? 4.7 0.6 0.002 32 6 36 .. 760 790 .. 746 806 .. 0.69 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0014 MSG 5 ekCielleeCyfleesckntkkkCdklkekCkk 37 + C +++C l + c+ ++ +C l +C++ T315666_2 675 QHCRGNDPHCLLLPTHCRGNDPHCLLLPTHCRG 707 679999***************9*********87 PP == domain 2 score: 4.1 bits; conditional E-value: 0.003 MSG 6 kCielleeCyfleesckntkkkCdklkekCkk 37 C +++C l + c+ ++ +C l +C++ T315666_2 704 HCRGNDPHCLLLPTHCRGNDPHCLLLPTHCRG 735 599999************************87 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0049 MSG 6 kCielleeCyfleesckntkkkCdklkekCkk 37 C +++C l + c+ ++ +C l +C++ T315666_2 718 HCRGNDPHCLLLPTHCRGNDPHCLLLPPHCRG 749 799999**************99****999986 PP == domain 4 score: 4.7 bits; conditional E-value: 0.002 MSG 6 kCielleeCyfleesckntkkkCdklkekCk 36 C +++C l + c+ ++ +C l +C+ T315666_2 760 HCRGNDPHCLLLPTHCRGNDPHCLLLPTHCR 790 4666666666666666666666666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 6966.65 // Query: T315666_3 [L=1314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 7831.52 // Query: T103482_1 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.45 # Mc/sec: 4558.26 // Query: T103482_2 [L=717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-120 402.9 18.8 1.6e-120 402.2 18.8 1.3 1 Transposase_22 L1 transposable element 0.0024 18.0 5.8 0.0059 16.7 5.8 1.7 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0072 15.6 7.6 0.016 14.4 7.6 1.6 1 GAS Growth-arrest specific micro-tubule binding ------ inclusion threshold ------ 0.016 13.1 4.1 0.022 12.6 4.1 1.1 1 Prominin Prominin 0.021 14.9 4.0 0.077 13.1 4.0 2.1 1 KLRAQ Predicted coiled-coil domain-containing prote 0.022 15.1 3.9 0.12 12.7 3.5 2.0 1 Spectrin Spectrin repeat 0.099 12.7 5.3 0.042 13.9 1.1 2.4 2 Med2 Mediator complex subunit 2 0.11 12.7 0.5 0.44 10.7 0.2 2.3 1 FAF Fantastic Four meristem regulator 0.11 10.7 7.0 0.16 10.1 7.0 1.3 1 DUF4613 Domain of unknown function (DUF4613) 0.13 12.1 1.7 0.25 11.2 1.7 1.4 1 DUF1664 Protein of unknown function (DUF1664) 0.13 11.5 8.8 0.19 10.9 8.8 1.3 1 APG6 Autophagy protein Apg6 0.15 12.2 10.9 0.057 13.6 7.0 2.2 2 Troponin Troponin 0.2 12.1 6.8 0.11 12.9 4.1 2.0 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.22 11.3 1.5 7.8 6.3 0.1 2.4 2 Sec8_exocyst Sec8 exocyst complex component specific domai 0.24 11.0 9.2 0.13 11.9 5.1 2.1 2 TBPIP Tat binding protein 1(TBP-1)-interacting prot 0.36 9.3 10.0 0.14 10.6 7.6 1.4 1 DUF342 Protein of unknown function (DUF342) 0.39 10.8 6.2 3.4 7.8 0.6 2.6 2 XhlA Haemolysin XhlA 0.42 10.7 6.2 1.7 8.8 0.6 2.7 2 UCR_hinge Ubiquinol-cytochrome C reductase hinge protei 0.49 10.5 5.3 2.5 8.2 5.2 2.3 1 JIP_LZII JNK-interacting protein leucine zipper II 1.5 9.4 7.5 1.6 9.3 5.1 2.4 2 DUF972 Protein of unknown function (DUF972) 1.7 8.7 11.1 3.9 7.5 11.1 1.6 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 2.4 7.8 12.4 0.17 11.6 7.2 1.7 2 IncA IncA protein 2.7 7.9 10.2 3.4 7.6 7.9 2.3 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 2.7 8.4 7.4 2.9 8.3 5.4 2.0 1 ZapB Cell division protein ZapB 3.5 8.2 6.6 1.3 9.6 1.5 2.6 3 DUF2203 Uncharacterized conserved protein (DUF2203) 3.8 7.8 8.4 5.9 7.2 0.3 3.0 3 Syntaxin_2 Syntaxin-like protein 5.7 7.4 7.3 1.6 9.1 3.1 2.3 1 DUF16 Protein of unknown function DUF16 6.2 6.8 15.1 33 4.5 15.1 2.2 1 ATG16 Autophagy protein 16 (ATG16) 6.4 5.8 6.3 5.9 5.9 2.5 1.6 2 TMPIT TMPIT-like protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 402.2 18.8 2.9e-123 1.6e-120 1 305 [. 446 716 .. 446 717 .] 0.97 Alignments for each domain: == domain 1 score: 402.2 bits; conditional E-value: 2.9e-123 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX. CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlki 87 +Gkk+ nrk++nsk++ +s+P+ke+sssPat + ++++f+elr+e++++++y+e +e+i++k+ke+e ++k++ee nt+k+lk T103482_2 446 MGKKQ---NRKTGNSKTQRASPPPKEHSSSPAT---EQS*MENNFDELREEGFRRSNYSEPREDIQTKGKEVEnFEKNLEEcitritNTKKCLK- 533 89***...*************************...456889*******************************9******96666666666666. PP .................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 88 ikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqv 182 el+elktk+ el++e++ sl+sr ++leervsa+ede+++++re+k+rekr+k++eqslq+ T103482_2 534 -----------------ELMELKTKAPELREECR------------------SLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQE 593 .................9****************..................******************************************* PP HHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEET CS Transposase_22 183 iqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlk 277 i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhii+r+tkv++k+k+l+a+rekGrvtlk T103482_2 594 IWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIIRFTKVEMKEKMLRAAREKGRVTLK 688 *********************************************************************************************** PP TEEEEEEE---HHHHHHHHHHHHHHHHH CS Transposase_22 278 GkPirltadlsaetlkarrewtdviqil 305 GkPirltadlsaetl+arrew+++++il T103482_2 689 GKPIRLTADLSAETLQARREWGPIFNIL 716 ***************************8 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 5.8 1.1e-05 0.0059 9 100 .. 482 573 .. 480 576 .. 0.97 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 1.1e-05 H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +n+++++e +R ++++ +++ ++ ++ ++ lee+ ++ + k +++++ k +a el++e ++l + ++le++++++e+e++++ T103482_2 482 NNFDELREEGFRRSNYSEPREDIQTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDM 573 8****************************************************************************************986 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 7.6 2.9e-05 0.016 56 127 .. 504 575 .. 488 595 .. 0.82 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.9e-05 GAS 56 nkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelyk 127 + +++++ ek++ee +++n +k ++l++lk++ el +e ++l+ +++l++r++++e+e +++++ T103482_2 504 IQTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKR 575 444455667777777777778889999999************************************999986 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 4.1 4e-05 0.022 203 352 .. 496 648 .. 493 672 .. 0.84 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4e-05 Prominin 203 nyeeleehvs...ddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCsk 298 ny+e++e++ +++++ +k+l + + + + + + L+el +l ++ +e +e+ +++++ ++L + s ++d ++++kr+ + + + ++++ ++ T103482_2 496 NYSEPREDIQtkgKEVENFEKNLEECITRITNTK--KCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRiKRNEQSLQE 593 7777777776222467788899998888888888..9999999999999999999999999999999999999999999999987777773333588888 PP Prominin 299 ilssleiekldtskcl.dqlpnvdevlealeevletnlssivkeglarlneipek 352 i + ++ + l + + +n +++ ++l++++++n+ +++++++ +++ei+++ T103482_2 594 IWDYVKRPNLRLIGVPeSDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRT 648 888888888877776678889*******************************987 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 4.0 0.00014 0.077 34 89 .. 537 588 .. 503 597 .. 0.72 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 0.00014 KLRAQ 34 elkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 elk+k+ +l ++E sL r +qLe rv+++ +e++ +++ +k ++k ++++ T103482_2 537 ELKTKAPEL---REECRSLRSRYNQLEERVSAMEDEMNDMKRE-GKFREKRIKRNE 588 455555555...5799**********************98755.665533333333 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 3.5 0.00022 0.12 2 94 .. 510 600 .. 509 602 .. 0.91 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.00022 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++++ l ++l + +++ +l ++++ l+ ++ +erv a ++ +++ eg++ +++i+ + l+e W+ +k+ T103482_2 510 EVENFEKNLEECITRITNTKKCL--KELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWDYVKR 600 67899999999999999999999..777788889999999************************************************98875 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 1.1 7.4e-05 0.042 46 96 .. 506 556 .. 490 562 .. 0.83 2 ? -0.8 0.0 2.8 1.6e+03 3 16 .. 616 629 .. 614 653 .. 0.76 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 7.4e-05 Med2 46 sLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 + +++++F++ L + ++++++k+++++l+e k++ e++e ++ r r T103482_2 506 TKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAPELREECRSLRSRY 556 55689*******************************999998766666554 PP == domain 2 score: -0.8 bits; conditional E-value: 2.8 Med2 3 enkLtqclddiLkv 16 +kL+++l+di++ T103482_2 616 GTKLENTLQDIIQE 629 58999*****9875 PP >> FAF Fantastic Four meristem regulator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.2 0.00078 0.44 28 53 .. 663 688 .. 643 688 .. 0.84 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00078 FAF 28 vleevkvpsrheylrAeRedGRLrLr 53 +++ kv+ ++++lrA Re+GR++L+ T103482_2 663 IIRFTKVEMKEKMLRAAREKGRVTLK 688 6666777777899***********95 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 7.0 0.00029 0.16 500 595 .. 426 542 .. 415 594 .. 0.80 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00029 DUF4613 500 splssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkknlekekeaeqlskelerls 575 ++++sv + +++ + ++++++ +++++++ +s + + + +++ ++sp +e +++ +k ke+e+++k+le+ + T103482_2 426 TKNPSVHHHHQRPKVDKTTKMGKKQNRKTGNSKTQRASPPPKEH---SSSPATEqs*mennfdelreegfrrsnysepREDIQTKGKEVENFEKNLEECI 522 55666666555557888888888888887777777443333333...333333345888999*************9988888999*************** PP DUF4613 576 ekltevqqsLseltdllqng 595 +++t+ +++L el++l+++ T103482_2 523 TRITNTKKCLKELMELKTKA 542 **************998765 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 1.7 0.00044 0.25 67 122 .. 510 568 .. 502 590 .. 0.63 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00044 DUF1664 67 ridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 ++++ +k+l+e++ ++++k +e++e++ + e++e+ +s+++ ++Le++++ +e+ T103482_2 510 EVENFEKNLEECITRITNTKkclKELMELKTKAPELREECRSLRSRYNQLEERVSAMED 568 56666666666665555554222355556666666666666666666666666666654 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 8.8 0.00034 0.19 27 112 .. 510 578 .. 480 655 .. 0.53 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00034 APG6 27 ayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalklela 112 + e+f k+le+ ++ ++++ l+el el+++ el+ee ++l++ ++lee+ +++ +e n++k+e + T103482_2 510 EVENFEKNLEECITRI-----------------TNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGK 578 2222222222222222.................22223333333333333333333333333333333333333333333333222 PP >> Troponin Troponin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 7.0 0.0001 0.057 22 110 .. 529 618 .. 509 630 .. 0.84 2 ? -1.4 0.2 4.4 2.5e+03 29 59 .. 625 655 .. 614 689 .. 0.61 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 0.0001 XXXXXXXXXXXXXXXXXX.XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX---THH...H CS Troponin 22 kkeeerlraLkerieplkdldglseeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGkfkkpalk..kvrktade...k 110 kk ++l Lk++ ++l+ ++ l+ ++++l er+ +e+e d+ ++ + ++k i+ +++ +++ k+p+l+ +v ++ e k T103482_2 529 KKCLKELMELKTKAPELR-EEC---RSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRliGVPESDGEngtK 618 555567777888888888.444...79********************************************99******988777776664444 PP == domain 2 score: -1.4 bits; conditional E-value: 4.4 XXXXXXXXXXX.XXX.XXXXXXXXXXXXXXX CS Troponin 29 raLkerieplkdldglseeqlqelckklher 59 +++e+ ++l +++ +++q +++ +r T103482_2 625 DIIQENFPNLARQANVQIQEIQRTPQRYSSR 655 5666666666655555555555444444433 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 4.1 0.00019 0.11 7 95 .. 501 598 .. 495 600 .. 0.67 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 0.00019 Syntaxin-6_N 7 keeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevree 94 +e++q + +++e+ +++ +++ ++++ ++ el+ eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + T103482_2 501 REDIQTKGKEVENFEKNLeeciTRITNTKKClKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDemndMKREGKFREKRIKRNEQSLQEIWDY 597 5666665555555555552112333333333448899999999********************9998733322344778888888888888877666 PP Syntaxin-6_N 95 v 95 v T103482_2 598 V 598 5 PP >> Sec8_exocyst Sec8 exocyst complex component specific domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 0.1 0.014 7.8 73 117 .. 496 540 .. 488 548 .. 0.88 2 ? 3.6 0.1 0.091 51 73 114 .. 555 596 .. 549 602 .. 0.91 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.014 Sec8_exocyst 73 sYskilssiqesqekvselKesleeskkklstkkkeLkelnarsa 117 +Ys+ + iq ++v++ ++lee + ++++kk Lkel + T103482_2 496 NYSEPREDIQTKGKEVENFEKNLEECITRITNTKKCLKELMELKT 540 89999999*******************************987655 PP == domain 2 score: 3.6 bits; conditional E-value: 0.091 Sec8_exocyst 73 sYskilssiqesqekvselKesleeskkklstkkkeLkelna 114 Y+++ + ++ +++++++K++ + +k +++++++L+e+++ T103482_2 555 RYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWD 596 59999999*******************************997 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.2 1.9 1.1e+03 115 137 .. 501 523 .. 494 533 .. 0.60 2 ? 11.9 5.1 0.00023 0.13 72 137 .. 533 596 .. 529 603 .. 0.90 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 1.9 TBPIP 115 leeiqelkkeveeieekLeslke 137 +e iq+ keve+ e+ Le+ T103482_2 501 REDIQTKGKEVENFEKNLEECIT 523 55666666666666666665443 PP == domain 2 score: 11.9 bits; conditional E-value: 0.00023 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeseltteelleeiqelkkeveeieekLeslke 137 +el++l+ + elree+++l + +++le+ ++e e+ ++++ e + ++k ++++e+ L+++ + T103482_2 533 KELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEM--NDMKREGKFREKRIKRNEQSLQEIWD 596 589999****************************9999..9999**999*********99998865 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 7.6 0.00025 0.14 337 421 .. 509 588 .. 500 605 .. 0.85 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00025 DUF342 337 eklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnk 421 ++++++e++lee+ ++++ kk +k+l +lk +e +e+ +l+ +++l+e+++++e+e++++k e + + e++ik n+ T103482_2 509 KEVENFEKNLEECITRITNTKKCLKELMELKT---KAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFR--EKRIKRNE 588 56688999999999999999999999999665...4589********************************9999..56666554 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.6 0.039 22 15 49 .. 496 530 .. 493 537 .. 0.87 2 ? 7.8 0.6 0.006 3.4 5 45 .. 555 595 .. 551 599 .. 0.88 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.039 XhlA 15 nlee.rvdkleekaaeaeekiknleedlkkiesnqk 49 n++e r ++++ k e+e+ knlee + +i+++ k T103482_2 496 NYSEpR-EDIQTKGKEVENFEKNLEECITRITNTKK 530 677766.89***********************9977 PP == domain 2 score: 7.8 bits; conditional E-value: 0.006 XhlA 5 rlerietkldnleervdkleekaaeaeekiknleedlkkie 45 r +++e+++ +e+++++ ++ e++ik +e l +i T103482_2 555 RYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIW 595 568899*****************************999985 PP >> UCR_hinge Ubiquinol-cytochrome C reductase hinge protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 0.6 0.003 1.7 9 49 .. 507 538 .. 499 543 .. 0.78 2 ? 4.6 0.5 0.063 36 12 35 .. 545 568 .. 535 599 .. 0.73 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.003 UCR_hinge 9 eCeekekCkklkkhyeeCveRVksrseaeteedCveelfdl 49 + ++ ++++k +eeC +R+++ ++ C++el++l T103482_2 507 KG---KEVENFEKNLEECITRITNTKK------CLKELMEL 538 43...7889*************98765......99998877 PP == domain 2 score: 4.6 bits; conditional E-value: 0.063 UCR_hinge 12 ekekCkklkkhyeeCveRVksrse 35 +e+C +l +y++ +eRV++ ++ T103482_2 545 LREECRSLRSRYNQLEERVSAMED 568 36788**************99877 PP >> JIP_LZII JNK-interacting protein leucine zipper II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 5.2 0.0045 2.5 31 70 .. 531 570 .. 508 571 .. 0.85 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0045 JIP_LZII 31 LIarvdeLtsereiLreEleslqkakerlesrikelEeel 70 ++++ eL++ LreE +sl++ ++le+r++++E+e+ T103482_2 531 CLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEM 570 5677889999999*************************98 PP >> DUF972 Protein of unknown function (DUF972) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 8.9 5e+03 50 50 .. 461 461 .. 421 507 .. 0.56 2 ? 9.3 5.1 0.0029 1.6 15 76 .. 526 594 .. 503 597 .. 0.52 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 8.9 H CS DUF972 50 e 50 + T103482_2 461 R 461 1 PP == domain 2 score: 9.3 bits; conditional E-value: 0.0029 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXXXXXXXXXXXXXXX CS DUF972 15 eqleelleeleelkeelaelleenaeLeleneklrerl.......ekeekeekekkkelsegkenLarl 76 ++++++l+el elk++ el ee ++L+ ++l er+ ++ ++e k ++k++++ +++L+++ T103482_2 526 TNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVsamedemNDMKREGKFREKRIKRNEQSLQEI 594 234445555555555555555555555555555555556666554444444444555555555555555 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 11.1 0.007 3.9 46 152 .. 488 599 .. 480 602 .. 0.75 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.007 Jnk-SapK_ap_N 46 eeeeaeleelreeleqLetekerekelrkraeeeleeie..dqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhe. 138 +ee + + e +e+++t+ ++ ++++k+ ee + +i +++ +e el++k +l+ee+r l + +++++++s++e++ +++k+e + ++ T103482_2 488 REEGFRRSNYSEPREDIQTKGKEVENFEKNLEECITRITntKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKr 583 55556666677778888888888888888888777777511456688889999999999*******9999****************9999888875 PP Jnk-SapK_ap_N 139 ..retellkklkelve 152 r ++ l++ ++v+ T103482_2 584 ikRNEQSLQEIWDYVK 599 6566666666666665 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 7.2 0.0003 0.17 82 169 .. 503 587 .. 459 599 .. 0.52 2 ? -3.0 0.2 8.7 4.9e+03 111 150 .. 623 660 .. 617 682 .. 0.61 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.0003 IncA 82 elselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelr.elsdlkeevqelrselerl 169 +++ +++ e+ le+ +r+ ++++lk+l e +++ ++++++ sl++++ +l+++++ ++ e +d k+e + +++++r+ T103482_2 503 DIQTKGKEVENFEKNLEECITRITNTKKCLKELMELKTKAP----ELREECRSLRSRYNQLEERVSAMEdEMNDMKREGKFREKRIKRN 587 33333333333333333333333333333333333333322....44444444444444444444444444444445555555555554 PP == domain 2 score: -3.0 bits; conditional E-value: 8.7 IncA 111 lkdleedleslqeelksvesrlesleesikelakeirelr 150 l+d+++++ ++ ++ + +++++++ ++++++ ++ r T103482_2 623 LQDIIQENFPNL--ARQANVQIQEIQRTPQRYSSRRATPR 660 444444444444..66666667777777777766666655 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 7.9 0.006 3.4 28 100 .. 501 576 .. 493 602 .. 0.62 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.006 TPR_MLP1_2 28 qedlekqaeiakeaqqkYer...elvkhaedikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkee 100 +ed++++ +++++ +++ e+ +++ ++ +kel +l++++ el++e ++l+++ +++++ +++ e+++++ k e T103482_2 501 REDIQTKGKEVENFEKNLEEcitRITNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKRE 576 6677777777777777776522234556666777777777777777777777777777777777777666665554 PP >> ZapB Cell division protein ZapB # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 5.4 0.0051 2.9 6 46 .. 535 580 .. 529 595 .. 0.70 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0051 ZapB 6 LeqLEskvqkaidtitlLqmeieeLkeeneelkeenrele.....e 46 L +L +k ++ +++++L+ ++ +L+e+++++++e++ ++ + T103482_2 535 LMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKregkfR 580 6678888888888888888888888888888888888888554442 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.1 0.67 3.8e+02 42 79 .. 498 535 .. 480 538 .. 0.69 2 ? 9.6 1.5 0.0024 1.3 10 84 .. 530 606 .. 524 617 .. 0.65 3 ? -2.1 0.0 9.8 5.5e+03 26 45 .. 635 654 .. 617 685 .. 0.49 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.67 DUF2203 42 eaekseaaeleaeleeleaeieelveeieelGvevkdl 79 ++ +++ +++ +e+e+ e+++ee +++i++++ +k+l T103482_2 498 SEPREDIQTKGKEVENFEKNLEECITRITNTKKCLKEL 535 33334478888999999999999999999998888876 PP == domain 2 score: 9.6 bits; conditional E-value: 0.0024 DUF2203 10 alLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvevkdleaglv 84 + L +l el +++ +lr+e ++l+++ ++ +++ ++ e + +++e ++ e++i++ + ++e+ vk + l+ T103482_2 530 KCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEdeMNDMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLI 606 55556666666666666666666665555555554444558888888888888888888888887777776666555 PP == domain 3 score: -2.1 bits; conditional E-value: 9.8 DUF2203 26 rkeleeleeeleeakaeaek 45 +++++ +e++++ +++++ T103482_2 635 ARQANVQIQEIQRTPQRYSS 654 33333333344443333333 PP >> Syntaxin_2 Syntaxin-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.3 0.011 5.9 33 63 .. 512 542 .. 492 544 .. 0.80 2 ? 4.3 6.0 0.081 46 3 74 .. 516 583 .. 514 648 .. 0.78 3 ? -0.2 0.3 2.2 1.2e+03 29 64 .. 617 653 .. 586 680 .. 0.64 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.011 Syntaxin_2 33 eklhelieeinelikktnellkklsqldnss 63 e+++++ ee+ + i++t++ lk+l++l+ + T103482_2 512 ENFEKNLEECITRITNTKKCLKELMELKTKA 542 688999999*****************99875 PP == domain 2 score: 4.3 bits; conditional E-value: 0.081 Syntaxin_2 3 snlqkinsnvstleklvkqLgtkr.dteelreklhelieeinelikktnellkklsqldnsssdsqqklqkek 74 +nl + + +++ +k +k L + +elre++++l+++ n+l +++++ +++ +++ ++ + + + T103482_2 516 KNLEECITRITNTKKCLKELMELKtKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGK-----FREKR 583 566666667777777777744433268888888888888888888888888888888877664.....33333 PP == domain 3 score: -0.2 bits; conditional E-value: 2.2 Syntaxin_2 29 eelreklheli.eeinelikktnellkklsqldnsss 64 ++l + l+++i e+ +l+++ n +++++++ ++ s T103482_2 617 TKLENTLQDIIqENFPNLARQANVQIQEIQRTPQRYS 653 5555555444303345555555666666655555444 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 3.1 0.0028 1.6 33 99 .. 539 605 .. 489 608 .. 0.75 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0028 HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 k++ ++ ++ ++l + n+le+ v++ +++++++k e k +++++++ +++l+ i + +++ n Rl T103482_2 539 KTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRL 605 3333344445559999***************************************999888877776 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 15.1 0.058 33 70 134 .. 478 590 .. 418 606 .. 0.52 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.058 ATG16 70 q................................................snskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleekl 121 + +++k +++ +l++k +lree l+ + ++l++r+ ++++e+ + +++ T103482_2 478 S*mennfdelreegfrrsnyseprediqtkgkevenfeknleecitritNTKKCLKELMELKTKAPELREECRSLRSRYNQLEERVSAMEDEMNDMKREG 577 3555555555533333333333333222211112222223333333443444444555555555555555555555555555555555555555555555 PP ATG16 122 kedeerlaeleae 134 k +e+r+++ e+ T103482_2 578 KFREKRIKRNEQS 590 5555555555544 PP >> TMPIT TMPIT-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 5.7 0.02 11 3 89 .. 510 591 .. 498 608 .. 0.43 2 ? 5.9 2.5 0.011 5.9 2 75 .. 547 623 .. 533 637 .. 0.61 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.02 TMPIT 3 eweelekefkeleethkkykqkleel...sklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesll 89 e+e++ek+++e+ ++ ++ k+ l+el ++ ++++e ++ + r+++l+++++ ++ + ++++k+e k r+k +k+ e++l T103482_2 510 EVENFEKNLEECITRITNTKKCLKELmelKTKAPELREECRSLRSRYNQLEERVSAMEDE--------MNDMKREGKFREKRIKRNEQSL 591 334444444444333333333332220002222333444444444444444444444444........3333333333333333333333 PP == domain 2 score: 5.9 bits; conditional E-value: 0.011 TMPIT 2 eeweelekefkeleethkkykqkleelsklqskcskeikkqkkrlkelksslkklkksvk...eeeeeeveelkeel 75 ee+++l++++++lee+ + ++ +++++++ + k+ik++++ l+e+++ +k+ + ++ e++ e+ ++l+++l T103482_2 547 EECRSLRSRYNQLEERVSAMEDEMNDMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIgvpESDGENGTKLENTL 623 45556666666666666666666666666666666666666666666666666555442244455555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1229 (0.075371); expected 326.1 (0.02) Passed bias filter: 529 (0.032442); expected 326.1 (0.02) Passed Vit filter: 133 (0.00815651); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 29 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 3944.64 // Query: T103482_3 [L=716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 4016.38 // Query: T183288_1 [L=4925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0066 15.9 0.8 0.016 14.7 0.8 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.8 9.9e-07 0.016 6 18 .. 4895 4907 .. 4893 4908 .. 0.90 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 9.9e-07 DUF1725 6 WMELEnIILSEis 18 WM+LE IILS+ + T183288_1 4895 WMKLEAIILSKLT 4907 **********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.54 # Mc/sec: 26091.83 // Query: T183288_2 [L=4925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.28s 00:00:01.48 Elapsed: 00:00:00.54 # Mc/sec: 26091.83 // Query: T183288_3 [L=4924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.26s 00:00:01.39 Elapsed: 00:00:00.51 # Mc/sec: 27621.03 // Query: T229030_1 [L=1754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 10035.79 // Query: T229030_2 [L=1753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00077 19.9 0.2 0.013 16.1 0.1 2.7 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.1 7.7e-07 0.013 10 42 .] 993 1026 .. 990 1026 .. 0.87 2 ? 0.2 0.0 0.067 1.1e+03 13 22 .. 1123 1132 .. 1119 1144 .. 0.80 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 7.7e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229030_2 993 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1026 579********8544.6***************766 PP == domain 2 score: 0.2 bits; conditional E-value: 0.067 GPS 13 gsWseeGClt 22 +Ws +GC++ T229030_2 1123 QRWSVRGCRS 1132 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.73 # Mc/sec: 6869.91 // Query: T229030_3 [L=1753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 8358.39 // Query: T258974_1 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.5 6.9 6.6 9.7 5.8 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00059 9.7 6 41 .. 1722 1757 .. 1708 1768 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00059 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258974_1 1722 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1757 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 11755.41 // Query: T258974_2 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.29s 00:00:01.42 Elapsed: 00:00:00.68 # Mc/sec: 11409.66 // Query: T258974_3 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.68 # Mc/sec: 11409.66 // Query: T369082_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 8261.20 // Query: T369082_2 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.65 # Mc/sec: 8256.80 // Query: T369082_3 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 8656.32 // Query: T018767_1 [L=8562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-08 34.3 0.5 2.5e-08 33.6 0.5 1.2 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.6 0.5 1.5e-12 2.5e-08 185 228 .. 4056 4099 .. 4052 4105 .. 0.92 Alignments for each domain: == domain 1 score: 33.6 bits; conditional E-value: 1.5e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018767_1 4056 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 4099 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.57u 0.46s 00:00:03.03 Elapsed: 00:00:00.89 # Mc/sec: 27521.83 // Query: T018767_2 [L=8562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-59 201.0 37.8 1.8e-35 122.4 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 2.2e-07 31.1 5.7 2.2e-07 31.1 5.7 3.9 4 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 1.9 8.4 13.2 0.029 14.2 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.7 15.7 2.3e-31 1.2e-27 3 96 .. 2144 2237 .. 2144 2238 .. 0.98 2 ! 122.4 14.1 3.2e-39 1.8e-35 184 304 .. 2322 2433 .. 2311 2434 .. 0.96 3 ? -6.8 12.5 3 1.6e+04 130 203 .. 2490 2566 .. 2462 2580 .. 0.47 Alignments for each domain: == domain 1 score: 96.7 bits; conditional E-value: 2.3e-31 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018767_2 2144 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 2237 599*****************************************************************************************95 PP == domain 2 score: 122.4 bits; conditional E-value: 3.2e-39 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018767_2 2322 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2410 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018767_2 2411 KLMNECDHLKESLFQYEREKAER 2433 **********************9 PP == domain 3 score: -6.8 bits; conditional E-value: 3 CCDC144C 130 rlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyq 203 ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ T018767_2 2490 AEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAM 2566 44444444444444444444444322223444444444444444443333333444444444444444444444333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -6.0 5.9 3 1.6e+04 29 94 .. 2163 2227 .. 2148 2233 .. 0.78 2 ? 0.0 0.6 0.19 1e+03 44 108 .. 2409 2477 .. 2396 2478 .. 0.75 3 ? -4.5 10.7 3 1.6e+04 8 65 .. 2506 2561 .. 2502 2575 .. 0.77 4 ! 31.1 5.7 4e-11 2.2e-07 9 107 .. 2531 2631 .. 2531 2633 .. 0.71 Alignments for each domain: == domain 1 score: -6.0 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018767_2 2163 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 2227 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 0.0 bits; conditional E-value: 0.19 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018767_2 2409 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2477 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -4.5 bits; conditional E-value: 3 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018767_2 2506 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2561 666789***********9..89******999984466666655.445566777777776 PP == domain 4 score: 31.1 bits; conditional E-value: 4e-11 DUF3496 9 kdLeselskmKtsqedsnkteLekykqlyleelkvrks.LsnklnktnerLa....evstkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnr 101 k Le e+ +Kt e+s eL k + y el r + +kl++ + +++ + + +l++ekeq +++lstl+tr esPcv+nl+ s++lnr T018767_2 2531 KMLEEEILNLKTHMENS-MVELSKLQ-EYKSELDERAMqAVEKLEEIHLQIE*ensNDQYQLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNR 2625 56777777777766666.77777654.45556655544133455555555534221334689*****************************.****** PP DUF3496 102 klipre 107 k+ip++ T018767_2 2626 KYIPQM 2631 ****86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 1.1 5.4e-06 0.029 24 94 .. 2324 2393 .. 2320 2394 .. 0.95 2 ? -1.8 5.1 0.48 2.6e+03 13 79 .. 2511 2576 .. 2478 2580 .. 0.80 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 5.4e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018767_2 2324 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2393 68999********************************************************76.9999986 PP == domain 2 score: -1.8 bits; conditional E-value: 0.48 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018767_2 2511 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2576 3333.45678999999999999999999999999999999999999999999999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 753 (0.0461793); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 3.17u 0.37s 00:00:03.54 Elapsed: 00:00:01.06 # Mc/sec: 23107.95 // Query: T018767_3 [L=8561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-16 60.2 9.6 2.8e-16 59.4 9.6 1.3 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.4 9.6 1.7e-20 2.8e-16 96 185 .. 2236 2323 .. 2223 2325 .. 0.93 Alignments for each domain: == domain 1 score: 59.4 bits; conditional E-value: 1.7e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018767_3 2236 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2323 689**********************9554.57..89*****************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.69u 0.39s 00:00:03.08 Elapsed: 00:00:00.96 # Mc/sec: 25512.05 // Query: T324950_1 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.1 12.1 0.3 0.22 11.1 0.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.3 1.3e-05 0.22 10 19 .] 315 324 .. 314 324 .. 0.96 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.3e-05 DUF1725 10 EnIILSEisQ 19 E IILSEi+Q T324950_1 315 EAIILSEITQ 324 89*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 2805.46 // Query: T324950_2 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.60 # Mc/sec: 2898.97 // Query: T324950_3 [L=607] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (607 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 2894.21 // Query: T336883_1 [L=703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 14.0 2.7 32 5.3 0.0 4.2 4 zf-RVT zinc-binding in reverse transcriptase Domain annotation for each model (and alignments): >> zf-RVT zinc-binding in reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.012 1.9e+02 37 66 .. 112 143 .. 103 150 .. 0.78 2 ? 0.6 0.1 0.057 9.2e+02 36 51 .. 211 226 .. 184 241 .. 0.57 3 ? 5.3 0.0 0.002 32 37 64 .. 255 282 .. 242 290 .. 0.87 4 ? 1.2 0.0 0.037 6.1e+02 38 50 .. 390 402 .. 370 420 .. 0.57 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.012 zf-RVT 37 Wlllrnrlltadrlarrgl..easdvCvlCdq 66 l+++ rl t+ rl +r+l ++ ++ + C+ T336883_1 112 RLVTHSRLITQLRLVTRHLvtQHAPRHPACTS 143 68999**********99995334444777765 PP == domain 2 score: 0.6 bits; conditional E-value: 0.057 zf-RVT 36 lWlllrnrlltadrla 51 l+++ rl t++rl T336883_1 211 SRLITQSRLITQSRLV 226 3344555555555555 PP == domain 3 score: 5.3 bits; conditional E-value: 0.002 zf-RVT 37 WlllrnrlltadrlarrgleasdvCvlC 64 l+++ rl t++rl +++++ ++ C l T336883_1 255 RLVTHLRLVTQSRLVTQHVPRHPACALS 282 57889999*****************997 PP == domain 4 score: 1.2 bits; conditional E-value: 0.037 zf-RVT 38 lllrnrlltadrl 50 l++r rl t++rl T336883_1 390 LVTRSRLVTRSRL 402 3333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3142.44 // Query: T336883_2 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.04 14.3 0.6 98 3.9 0.0 3.6 3 Ank_3 Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 0.01 1.6e+02 2 14 .. 103 115 .. 102 118 .. 0.84 2 ? 3.9 0.0 0.006 98 2 14 .. 240 252 .. 239 256 .. 0.86 3 ? 3.1 0.0 0.011 1.8e+02 2 14 .. 368 380 .. 367 384 .. 0.82 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.01 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A+ s + T336883_2 103 QRTPLHPACASSP 115 69*******9876 PP == domain 2 score: 3.9 bits; conditional E-value: 0.006 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A++s + T336883_2 240 QRTPLHPACSSSP 252 69*******9976 PP == domain 3 score: 3.1 bits; conditional E-value: 0.011 Ank_3 2 GetpLhlAarsgr 14 ++tpLh A+ s + T336883_2 368 QRTPLHPACASSP 380 69****9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.22s 00:00:00.94 Elapsed: 00:00:00.67 # Mc/sec: 2997.47 // Query: T336883_3 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.73 # Mc/sec: 2751.10 // Query: T179752_1 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 4852.41 // Query: T179752_2 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 101 (0.00619404); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 5046.50 // Query: T179752_3 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 8.4 8.2 0.22 10.6 0.5 3.1 2 DUF3678 Protein of unknown function (DUF3678) Domain annotation for each model (and alignments): >> DUF3678 Protein of unknown function (DUF3678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 1.9 0.034 5.5e+02 11 22 .. 200 213 .. 197 219 .. 0.78 2 ? 10.6 0.5 1.4e-05 0.22 13 25 .. 391 409 .. 385 412 .. 0.76 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.034 DUF3678 11 vSa..sSSSssmlH 22 +S ++SS+ +++ T179752_3 200 TSF*nWTSSCGLSS 213 55577*****8766 PP == domain 2 score: 10.6 bits; conditional E-value: 1.4e-05 DUF3678 13 a......sSSSssmlHrql 25 +SSSss++H ++ T179752_3 391 KeswllfPSSSSSPSHQRR 409 45555669*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.59 # Mc/sec: 4271.85 // Query: T016082_1 [L=2446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-47 159.5 2.8 1.1e-46 159.0 2.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.0 2.8 6.9e-51 1.1e-46 1 222 [] 1557 1813 .. 1557 1813 .. 0.95 Alignments for each domain: == domain 1 score: 159.0 bits; conditional E-value: 6.9e-51 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk+ a+r++ +++kl++++q+ f pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T016082_1 1557 IPKPGrdttkKENFRPISLMNIDAKILNKIPANRIQRHIKKLIHHDQVSFIPGIQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQLFML 1654 899999999999*******************************************99999***99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + ++i++++ ++++++ +ng++ e ++ k+g++qG++lS llfn++++ l r +r++ ++v+l+++aDD++++ ++ T016082_1 1655 KTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSSLLFNIVLEVLARAIRQQKeikgiqlgkEEVKLSLFADDMIVYLENpI 1752 ********************************99**************************************************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + q+ll+ ++++ k sg+kin + ++++l ++ s+++kyLG++l T016082_1 1753 VSTQNLLKLISNFSKVSGYKINVQTSQAFLHtnnrqtesqimRElpftiASKRIKYLGIQL 1813 77***************************98999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 10141.44 // Query: T016082_2 [L=2445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00021 20.7 0.1 0.00041 19.8 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.1 2.5e-08 0.00041 1 19 [] 2280 2298 .. 2280 2298 .. 0.94 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 2.5e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+ +WM+LE+ ILS+ sQ T016082_2 2280 SFVRTWMKLETVILSKLSQ 2298 6888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 9851.73 // Query: T016082_3 [L=2445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 10286.37 // Query: T259533_1 [L=722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.57 # Mc/sec: 3561.24 // Query: T259533_2 [L=722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.53 # Mc/sec: 3897.21 // Query: T259533_3 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.64 # Mc/sec: 3222.90 // Query: T159176_1 [L=14947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-06 27.8 0.0 0.41 10.5 0.0 6.3 9 Cut12 Spindle pole body formation-associated protein Domain annotation for each model (and alignments): >> Cut12 Spindle pole body formation-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.0 2.5e-05 0.41 52 87 .. 12190 12225 .. 12166 12232 .. 0.92 2 ? -3.4 0.0 0.46 7.6e+03 58 80 .. 12262 12284 .. 12256 12294 .. 0.79 3 ? -2.5 0.0 0.25 4.1e+03 60 78 .. 12304 12322 .. 12304 12324 .. 0.90 4 ! 2.6 0.0 0.0068 1.1e+02 60 87 .. 12437 12464 .. 12428 12481 .. 0.84 5 ? -2.6 0.0 0.28 4.5e+03 60 82 .. 12556 12578 .. 12555 12589 .. 0.88 6 ? 1.0 0.0 0.021 3.4e+02 53 82 .. 12589 12618 .. 12584 12626 .. 0.85 7 ? -2.6 0.0 0.26 4.2e+03 53 76 .. 12629 12652 .. 12624 12653 .. 0.90 8 ! 3.1 0.0 0.0048 79 52 81 .. 12721 12750 .. 12717 12755 .. 0.91 9 ? -1.4 0.0 0.12 1.9e+03 60 78 .. 12795 12813 .. 12787 12817 .. 0.87 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 2.5e-05 Cut12 52 eeDvTinLnePrSqSGkYWkseFesyrsdaelEiek 87 ++D+ ++++ P S G+ W++ F+s + + E+++ T159176_1 12190 QQDTCVEMDSPVSTAGRVWQKGFSSVHGGTCVEMDS 12225 789******************************986 PP == domain 2 score: -3.4 bits; conditional E-value: 0.46 Cut12 58 nLnePrSqSGkYWkseFesyrsd 80 + + P S G W++ F+s + T159176_1 12262 EKDSPVSTVGSVWREGFSSVHGG 12284 5689**************99965 PP == domain 3 score: -2.5 bits; conditional E-value: 0.25 Cut12 60 nePrSqSGkYWkseFesyr 78 + P S G+ W++ F+s + T159176_1 12304 DSPVSTAGRVWREGFSSVH 12322 5799***********9987 PP == domain 4 score: 2.6 bits; conditional E-value: 0.0068 Cut12 60 nePrSqSGkYWkseFesyrsdaelEiek 87 + P S G+ W++ F+s + + E+++ T159176_1 12437 DSPVSTAGRVWQEGFSSVHGGTCVEMDS 12464 6799999999999999999999999875 PP == domain 5 score: -2.6 bits; conditional E-value: 0.28 Cut12 60 nePrSqSGkYWkseFesyrsdae 82 + P S G+ W + F+s +s ++ T159176_1 12556 DSPVSTAGRVWGKGFSSVHSGTR 12578 579****************9876 PP == domain 6 score: 1.0 bits; conditional E-value: 0.021 Cut12 53 eDvTinLnePrSqSGkYWkseFesyrsdae 82 +Dv + + P S G+ W++ F+s +s ++ T159176_1 12589 QDVCGEKDSPVSTVGRVWREGFSSVHSGTR 12618 666777799*****************9876 PP == domain 7 score: -2.6 bits; conditional E-value: 0.26 Cut12 53 eDvTinLnePrSqSGkYWkseFes 76 +Dv ++ + P S G W++ F+s T159176_1 12629 RDVCVEKDSPVSTAGCVWREGFSS 12652 7999****************9976 PP == domain 8 score: 3.1 bits; conditional E-value: 0.0048 Cut12 52 eeDvTinLnePrSqSGkYWkseFesyrsda 81 +Dv ++ + P S G+ W++ F+s + ++ T159176_1 12721 RQDVCVEKDSPVSTEGRVWREGFSSVHGRT 12750 5899*********************99776 PP == domain 9 score: -1.4 bits; conditional E-value: 0.12 Cut12 60 nePrSqSGkYWkseFesyr 78 + P S G+ W++ F+s + T159176_1 12795 DSPVSTAGRVWREGFSSVH 12813 78*************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14947 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.39u 0.47s 00:00:03.86 Elapsed: 00:00:00.90 # Mc/sec: 47512.03 // Query: T159176_2 [L=14946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.67u 0.50s 00:00:04.17 Elapsed: 00:00:00.94 # Mc/sec: 45487.20 // Query: T159176_3 [L=14946] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14946 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.81u 0.42s 00:00:04.23 Elapsed: 00:00:01.08 # Mc/sec: 39590.71 // Query: T381566_1 [L=4915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.36s 00:00:01.96 Elapsed: 00:00:00.87 # Mc/sec: 16162.05 // Query: T381566_2 [L=4914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.32s 00:00:01.82 Elapsed: 00:00:00.68 # Mc/sec: 20673.70 // Query: T381566_3 [L=4914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.39s 00:00:01.98 Elapsed: 00:00:00.72 # Mc/sec: 19525.16 // Query: T368849_1 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 6277.00 // Query: T368849_2 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.6 0.0 0.023 14.7 0.0 1.3 1 Lipocalin Lipocalin / cytosolic fatty-acid binding protein f Domain annotation for each model (and alignments): >> Lipocalin Lipocalin / cytosolic fatty-acid binding protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 1.4e-06 0.023 45 116 .. 208 277 .. 188 300 .. 0.76 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.4e-06 EETTE..EEEEEEEEEEESSTTEEEEEEEESTTEEEEEEEEEESSSEEEEEEEEECTTE.EEEEEEEEESSSSEE CS Lipocalin 45 kdggk..ceeesitakkteepgklgvefdeyldgrkvkvlttdydnylilylkkdkegk.ttlvaellsrdpels 116 ++gg+ c+e++it++ t+ +g++ f +++ +v ++tdy + lily+ + +++ t+l + l +r + T368849_2 208 QEGGEgvCKETNITVHPTQLQGQYQGSF--EGGSMHVCFVSTDY-SNLILYVRFE-DDEiTNLWVLL-ARRMLED 277 6888889********************7..5556699999****.7778887777.33434444444.7764444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5820.49 // Query: T368849_3 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 4925.03 // Query: T308981_1 [L=7858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.30u 0.42s 00:00:02.72 Elapsed: 00:00:00.81 # Mc/sec: 27753.58 // Query: T308981_2 [L=7858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7858 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.39s 00:00:02.37 Elapsed: 00:00:00.75 # Mc/sec: 29973.87 // Query: T308981_3 [L=7857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.34s 00:00:02.52 Elapsed: 00:00:00.82 # Mc/sec: 27411.64 // Query: T091453_1 [L=4819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-12 46.5 0.0 6.2e-12 45.8 0.0 1.3 1 RNase_H RNase H 3.1e-08 33.7 0.0 6.1e-08 32.7 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.21 11.0 0.6 0.34 10.2 0.0 1.6 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.8 0.0 1.1e-15 6.2e-12 3 92 .. 2998 3086 .. 2996 3090 .. 0.88 Alignments for each domain: == domain 1 score: 45.8 bits; conditional E-value: 1.1e-15 SEEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSE CS RNase_H 3 avvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawktt 92 ++++Yt Gs++ ++g ++ag+++ ++++ s+pl++ ++++ aEL A++ aL +++++n+ytDSkY++ ++ + wk+++ +t+ T091453_1 2998 DLNLYTNGSSFVKNGIRRAGYTIVSDVTVLESKPLPPGTSAQLAELVALTRALVlG--KGKRINVYTDSKYAYVILHAHAAIWKEREFPTS 3086 5789*****************7777867788999*******************955..99**************88888888888777664 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.0 1.1e-11 6.1e-08 4 100 .. 2404 2495 .. 2402 2496 .. 0.94 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 1.1e-11 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P + + i+g+ i +llDtG +v+ + + +++++++Gi+g+ + + + ++ + f++ +l++pe+p +llGrd+L k g+ + T091453_1 2404 EPQVCLTIEGQEIDFLLDTGVAFSVLISCSGRLS----SRSVTIRGILGQPvTRDFFHLLSCNWETLLFSH--AFLVMPESPTPLLGRDILAKAGAII 2495 699999*********************9999999....************9899999**************..*******************998765 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.1 0.75 4.1e+03 90 105 .. 1468 1483 .. 1465 1485 .. 0.86 2 ? 10.2 0.0 6.3e-05 0.34 3 54 .. 2070 2121 .. 2068 2128 .. 0.90 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.75 Gag_p30 90 trpdwdyetaegresl 105 rp wdy ++ re++ T091453_1 1468 WRPRWDYRLSPSRETI 1483 59**********9975 PP == domain 2 score: 10.2 bits; conditional E-value: 6.3e-05 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtllt 54 pfs sdl + k++ fs+dp + +++ + t + +w d ll+ l+ T091453_1 2070 VPFSLSDLKQIKADLAKFSDDPDRYLDVLQGLGQTFDLAWRDVMLLLDQTLA 2121 69*****************************************999977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 534 (0.0327487); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.03u 0.42s 00:00:02.44 Elapsed: 00:00:00.74 # Mc/sec: 18630.19 // Query: T091453_2 [L=4818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-39 135.3 3.4 4.1e-39 134.6 3.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) ------ inclusion threshold ------ 2.7 7.2 14.7 4.6 6.5 14.7 1.2 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.6 3.4 5.1e-43 4.1e-39 335 524 .. 3209 3394 .. 3195 3410 .. 0.87 Alignments for each domain: == domain 1 score: 134.6 bits; conditional E-value: 5.1e-43 XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHH CS TLV_coat 335 vapngtvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqfkkLq 430 ++++g +f+c+ +t + l++++++ C l+ l P+i++++g+ + +++ + R a++l++lL+GLgi +++gtG++ l s+ ++ L+ T091453_2 3209 LPSQGIFFLCG-MWT---YICLPTNWIGTCTLVFLSPNINIAPGNqSLSVPLKTQVCQCR---AIQLIPLLTGLGIVTATGTGIASLsTSLSYYQTLS 3299 57888999998.589...99*************************655556666666777...************************99********* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHH.HHHHHHHHHHHHH.HHHHHH-XXXX.XXXXXX CS TLV_coat 431 aalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgiv.rdsiakLqerleq.rqrllednqlwfegllgl 524 + +q++++sI l+ +++sl v lQN RGLDlL++e+GGlC+ L E CCFy ++s iv + Lqe+ ++ rqrl+++ + +++ l T091453_2 3300 KDFSDSLQEITKSILTLQSQIDSLTAVTLQNHRGLDLLTAEKGGLCTFLGEDCCFYTNQSWIV*D-ATRCLQEKASEiRQRLSNSYTNLWSWATWL 3394 ************************************************************99774.347899987543888888888887776544 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 14.7 0.00057 4.6 42 124 .. 3109 3196 .. 3096 3200 .. 0.70 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00057 DUF1510 42 e.....eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenveka 124 +++++ +e+ e+++++ e +e ++++ +e eee +++ e++++ ++++ ++ +ee ++ +++e ++ev++ + +++ +++ T091453_2 3109 VavlhcQSHQKGKEKGEQQHKHMAEAEEMKDRKRQEVREEEIERQREKEKDRKSKRRRQREEETDRGSQKERDEEVKDRDRSSKEKTV 3196 1455545666777777777777778888888888888888888888888888888888888888886666666666666666665555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1180 (0.072366); expected 326.1 (0.02) Passed bias filter: 480 (0.029437); expected 326.1 (0.02) Passed Vit filter: 138 (0.00846314); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.51u 0.48s 00:00:03.99 Elapsed: 00:00:00.96 # Mc/sec: 14357.79 // Query: T091453_3 [L=4818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-14 54.2 0.0 1.8e-14 53.6 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.6 0.0 1.1e-18 1.8e-14 85 206 .. 2160 2281 .. 2146 2286 .. 0.89 Alignments for each domain: == domain 1 score: 53.6 bits; conditional E-value: 1.1e-18 Gag_p30 85 eafpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaafle.rlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 +a+p p+wd ++ + s k +l glr ++p n + + +++qgkee+p+afle ea r+ytp pe+ e + + fi+qsa+dir T091453_3 2160 QAIPSMDPHWDLDSDHEDWSCKHLLTCVLEGLRRIIKKPMNYSMMSTITQGKEENPSAFLE*L-WEALRKYTPLSPESLEGQLILKDKFITQSATDIR 2256 6899999********9999999999**********************************9665.69******************************** PP Gag_p30 182 kklqrleglqeatlkdlvkeaekvy 206 +k+q+ e++l+ l++ v T091453_3 2257 RKFQKQALGPEKNLEALLNLVTLVL 2281 ****987777778877776665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.73u 0.47s 00:00:02.20 Elapsed: 00:00:00.87 # Mc/sec: 15843.08 // Query: T111433_1 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 7201.83 // Query: T111433_2 [L=1737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 8422.48 // Query: T111433_3 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 6897.78 // Query: T034130_1 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3018.67 // Query: T034130_2 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 2870.21 // Query: T034130_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3013.74 // Query: T166992_1 [L=166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.54 # Mc/sec: 879.44 // Query: T166992_2 [L=166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 833.15 // Query: T166992_3 [L=165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.56 # Mc/sec: 842.92 // Query: T028412_1 [L=3997] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3997 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.35s 00:00:01.87 Elapsed: 00:00:00.77 # Mc/sec: 14850.31 // Query: T028412_2 [L=3996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.31s 00:00:01.69 Elapsed: 00:00:00.74 # Mc/sec: 15448.48 // Query: T028412_3 [L=3996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.71 # Mc/sec: 16101.23 // Query: T222289_1 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 4443.51 // Query: T222289_2 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.57 # Mc/sec: 4749.96 // Query: T222289_3 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 4111.91 // Query: T001693_1 [L=1815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.71 # Mc/sec: 7313.25 // Query: T001693_2 [L=1814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.78 # Mc/sec: 6653.26 // Query: T001693_3 [L=1814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.096 12.6 0.0 0.28 11.1 0.0 1.7 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 1.7e-05 0.28 37 82 .. 626 672 .. 610 682 .. 0.79 2 ? -2.9 0.0 0.38 6.2e+03 4 23 .. 1407 1426 .. 1406 1432 .. 0.84 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.7e-05 HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 37 kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 k+ gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001693_3 626 KRAGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 672 689********************853788888888877777777765 PP == domain 2 score: -2.9 bits; conditional E-value: 0.38 HHTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 4 IengklGevvsvdvwtldtr 23 ++ g++G++ +++ w+ + + T001693_3 1407 LRRGSIGKPCMFHFWFNQAF 1426 6789*********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.59 # Mc/sec: 8795.84 // Query: T125480_1 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4351.47 // Query: T125480_2 [L=867] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (867 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.68 # Mc/sec: 3647.56 // Query: T125480_3 [L=866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.67 # Mc/sec: 3697.73 // Query: T183049_1 [L=3536] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3536 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.66 # Mc/sec: 15327.11 // Query: T183049_2 [L=3535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.26s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 18058.99 // Query: T183049_3 [L=3535] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.049 13.8 0.2 15 5.9 0.0 2.7 2 DUF2484 Protein of unknown function (DUF2484) Domain annotation for each model (and alignments): >> DUF2484 Protein of unknown function (DUF2484) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.0016 26 9 27 .. 176 194 .. 170 206 .. 0.76 2 ? 5.9 0.0 0.0009 15 6 28 .. 259 281 .. 255 292 .. 0.76 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0016 DUF2484 9 vlWvlvAavvallplRwhw 27 W++v++ ++++p++w T183049_3 176 GFWIMVSTGIPVVPSHWES 194 57**************975 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0009 DUF2484 6 llavlWvlvAavvallplRwhws 28 ++ v W+ v++ ++++p++w T183049_3 259 TACVFWITVSTGIPVVPSHWESM 281 67789**************9754 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3535 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.27s 00:00:01.27 Elapsed: 00:00:00.53 # Mc/sec: 19081.20 // Query: T260856_1 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 4487.93 // Query: T260856_2 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 4583.41 // Query: T260856_3 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.43 # Mc/sec: 5009.78 // Query: T004126_1 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1374 (0.0842635); expected 326.1 (0.02) Passed bias filter: 437 (0.0268); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.52 # Mc/sec: 7372.14 // Query: T004126_2 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.45 # Mc/sec: 8518.92 // Query: T004126_3 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 927 (0.0568502); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.51 # Mc/sec: 7516.69 // Query: T032081_1 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 3043.44 // Query: T032081_2 [L=499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 3103.38 // Query: T032081_3 [L=499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.44 # Mc/sec: 3244.44 // Query: T156483_1 [L=380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44 # Mc/sec: 2470.72 // Query: T156483_2 [L=379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.45 # Mc/sec: 2409.45 // Query: T156483_3 [L=379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.47 # Mc/sec: 2306.92 // Query: T258483_1 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.16 12.3 6.3 3.8e+02 1.5 0.0 7.1 9 DUF4179 Domain of unknown function (DUF4179) Domain annotation for each model (and alignments): >> DUF4179 Domain of unknown function (DUF4179) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.0 0.024 3.8e+02 54 68 .. 866 880 .. 846 881 .. 0.90 2 ? 0.8 0.0 0.039 6.3e+02 55 68 .. 907 920 .. 893 921 .. 0.92 3 ? 0.6 0.0 0.045 7.3e+02 55 68 .. 927 940 .. 925 941 .. 0.93 4 ? 0.5 0.0 0.048 7.8e+02 55 68 .. 967 980 .. 947 981 .. 0.87 5 ? -1.0 0.0 0.14 2.2e+03 55 68 .. 987 1000 .. 985 1001 .. 0.91 6 ? -2.0 0.0 0.3 4.8e+03 55 68 .. 1007 1020 .. 1006 1021 .. 0.91 7 ? -0.7 0.0 0.12 1.9e+03 54 68 .. 1026 1040 .. 1022 1041 .. 0.91 8 ? -0.8 0.0 0.12 2e+03 55 68 .. 1047 1060 .. 1046 1061 .. 0.92 9 ? 0.8 0.1 0.039 6.3e+02 55 68 .. 1087 1100 .. 1067 1101 .. 0.88 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.024 SEEEEEEEEETTEEE CS DUF4179 54 aqkvnksvtdnGitv 68 +q+v ksvt+ +it+ T258483_1 866 TQPVSKSVTSSDITL 880 79***********96 PP == domain 2 score: 0.8 bits; conditional E-value: 0.039 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q+v+ksvt+ +it+ T258483_1 907 QPVGKSVTSSDITL 920 89**********96 PP == domain 3 score: 0.6 bits; conditional E-value: 0.045 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q+v+ksvt+ +it+ T258483_1 927 QPVGKSVTSSDITL 940 89**********96 PP == domain 4 score: 0.5 bits; conditional E-value: 0.048 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q+v ksvt+ +it+ T258483_1 967 QPVSKSVTSSDITL 980 899*******9996 PP == domain 5 score: -1.0 bits; conditional E-value: 0.14 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 ++v ksvt+ +it+ T258483_1 987 KPVSKSVTSSDITL 1000 689*********96 PP == domain 6 score: -2.0 bits; conditional E-value: 0.3 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q+v ksvt+ +it+ T258483_1 1007 QPVSKSVTSCDITL 1020 89*******99996 PP == domain 7 score: -0.7 bits; conditional E-value: 0.12 SEEEEEEEEETTEEE CS DUF4179 54 aqkvnksvtdnGitv 68 +q+v ksvt+ +it+ T258483_1 1026 SQPVSKSVTSCDITL 1040 699*******99996 PP == domain 8 score: -0.8 bits; conditional E-value: 0.12 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q++ ksvt+ +it+ T258483_1 1047 QPISKSVTSSDITL 1060 899*********96 PP == domain 9 score: 0.8 bits; conditional E-value: 0.039 EEEEEEEEETTEEE CS DUF4179 55 qkvnksvtdnGitv 68 q+v ksvt+ +it+ T258483_1 1087 QPVSKSVTSSDITL 1100 789*********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.47 # Mc/sec: 6762.52 // Query: T258483_2 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 15.3 0.3 33 4.7 0.0 4.6 4 DED Death effector domain Domain annotation for each model (and alignments): >> DED Death effector domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 0.11 1.8e+03 8 44 .. 490 526 .. 489 527 .. 0.80 2 ? 0.6 0.0 0.04 6.6e+02 6 25 .. 588 607 .. 570 627 .. 0.54 3 ? 2.9 0.0 0.0075 1.2e+02 8 61 .. 650 703 .. 648 708 .. 0.83 4 ? 4.7 0.0 0.002 33 8 65 .. 730 787 .. 727 793 .. 0.91 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.11 HTTTS-HHHHHHHHHHTT..S-TTS.--TTSHHHHHH CS DED 8 iseeLteeelesLkfLlkdllpkrklekiksgldlft 44 +s+++t+++++ L L + ++k+ +++ + l+++t T258483_2 490 VSNSITSSDITLLQVLTPQPVSKSVTSSDITLLQVLT 526 7899999999999999888888888777777777765 PP == domain 2 score: 0.6 bits; conditional E-value: 0.04 HHHTTTS-HHHHHHHHHHTT CS DED 6 leiseeLteeelesLkfLlk 25 +++s++ t+++++ L +L T258483_2 588 QQVSKRVTSSDITLLQMLTP 607 34555555555555555544 PP == domain 3 score: 2.9 bits; conditional E-value: 0.0075 HTTTS-HHHHHHHHHHTT..S-TTS.--TTSHHHHHHHHHHHTS-STTB-HHHH CS DED 8 iseeLteeelesLkfLlkdllpkrklekiksgldlfteLekkgllsednldlLe 61 +s++ t+++++ L L ++ +++r +++ ++l+++t + ++ ++ +lL+ T258483_2 650 VSKSVTSSDITLLQVLTSHPVSRRVTSSDITPLQVLTPQPASKSVTSSDITLLQ 703 8999**********999988**999999999***99977666666666666665 PP == domain 4 score: 4.7 bits; conditional E-value: 0.002 HTTTS-HHHHHHHHHHTT..S-TTS.--TTSHHHHHHHHHHHTS-STTB-HHHHHHHT CS DED 8 iseeLteeelesLkfLlkdllpkrklekiksgldlfteLekkgllsednldlLeelLr 65 +s++ t+++++ L L ++ +++r +++ ++l+++t + ++ ++ +lL+ l+ T258483_2 730 VSKSVTSSDITLLQVLTSHPVSRRVTSSDITPLQVLTPQPASKSVTSSDITLLQVLMS 787 899***********999988***999***********999999999999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 6621.63 // Query: T258483_3 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 27 (0.00165583); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45 # Mc/sec: 7063.07 // Query: T012231_1 [L=3528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-26 92.6 6.6 5.7e-25 87.8 2.1 2.5 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.02 14.4 0.3 0.044 13.3 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.2 0.00042 3.5 308 334 .. 359 385 .. 356 393 .. 0.88 2 ! 87.8 2.1 6.9e-29 5.7e-25 166 271 .. 1681 1785 .. 1679 1787 .. 0.95 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00042 TT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 308 kkfqPrllyPaklsiiidGeikvfidk 334 kkf Pr+ y k+ + +Geik f d T012231_1 359 KKFYPRIAYLVKIFYKHEGEIKAFPDT 385 89**********************995 PP == domain 2 score: 87.8 bits; conditional E-value: 6.9e-29 HHHHHHHHHHHHHHHHHHHHHHT.TTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESS CS Transposase_22 166 vkerekrkkileqslqviqdtvk.rPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttk 257 +k ++k +++ eqslq++ d+vk nlr+i ++e+e e+ k lenil iieenf l ++++ +iqe++r ++ kr+s+rhi++r++k T012231_1 1681 TKTKKKSIRKYEQSLQEVLDYVK*S-NLRIISIPEEE-ENSKSLENILGGIIEENFSGLVRDLDSQIQEAQRILGKFIAKRSSPRHIVIRLSK 1771 58999*****************666.9*******966.799**************************************************** PP HHHHHHHHHHHHHH CS Transposase_22 258 vlnkdkilkavrek 271 v++k++il+av +k T012231_1 1772 VKTKERILRAVIQK 1785 **********9776 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.3 5.4e-06 0.044 9 19 .] 3176 3186 .. 3174 3186 .. 0.91 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 5.4e-06 DUF1725 9 LEnIILSEisQ 19 LE+IILSE++Q T012231_1 3176 LETIILSEVTQ 3186 9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1242 (0.0761683); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.24u 0.30s 00:00:01.54 Elapsed: 00:00:00.57 # Mc/sec: 17401.74 // Query: T012231_2 [L=3527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-38 131.5 1.9 2.4e-29 102.3 0.3 2.4 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.1 7.3e-11 1.2e-06 93 187 .. 1023 1127 .. 1016 1144 .. 0.83 2 ! 102.3 0.3 1.5e-33 2.4e-29 47 208 .. 2477 2653 .. 2472 2670 .. 0.89 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 7.3e-11 G-EEET.........................TEEEEESB-.-ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH. CS RVT_1 93 tafkvptklinliksflstrsfsvrvngeesegryekkgl.pqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee. 179 ++++++ + +n+ik+++s ++s+ +n+e+ + ++ g+ + G+ lSPll n++++ l r ++++ k+v+l+++aD +l++ +++++ T012231_2 1023 KKLGTEGTYLNTIKAIYSRHTASIMLNWEKLKAFPLRFGT*K-GWLLSPLLLNIVLDVLARAIKQEKeikgiqirkKEVKLSLFADNMLLYLEKPKDs 1119 56778888899*****************98788887766666.9*********************99***************************7774 PP HHHHHHHH CS RVT_1 180 lqelleav 187 +++lle + T012231_2 1120 IKKLLELI 1127 55555443 PP == domain 2 score: 102.3 bits; conditional E-value: 1.5e-33 HH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHH CS RVT_1 47 pgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 + + ++ ++++++ + k+k+++++++D kkaFd++++++ +++l +++++ + +n+ik+++ ++++ + +nge+ + + +g++qG +lSP T012231_2 2477 TRDAGWFNIrksiNVIHHIKRIKNKNHTIISIDAKKAFDKIQHPFMIKTLSKISIQGTYLNVIKAIYDKPTADIILNGEKLKAFRLRTGTRQGYPLSP 2574 55555555566658888998889999*****************************************************99***************** PP HHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHH.TT--BEGGG-EEE.. CS RVT_1 141 llfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlke.sglkinpeKtklvlf 208 llfn++++ l r +r+ ++v+l++ aD ++i+ +++++ +lle v+e+ ++ sg++in +K+ ++l+ T012231_2 2575 LLFNIVLEVLARAIRQGKeikgiqigkEKVKLSLLADNMIIYLENPKDfSRKLLELVKEFSSKvSGYNINVHKSVALLY 2653 ****************99***************************8885788888899998889**********99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1330 (0.0815651); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.28u 0.27s 00:00:01.55 Elapsed: 00:00:00.55 # Mc/sec: 18345.72 // Query: T012231_3 [L=3527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-26 91.8 16.9 1.2e-19 70.3 0.0 3.7 4 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 7.3e-10 1.2e-05 270 301 .. 322 353 .. 320 354 .. 0.94 2 ? -8.4 5.4 1 1.6e+04 54 83 .. 812 841 .. 757 853 .. 0.51 3 ! 8.6 0.7 4.1e-05 0.67 136 175 .. 1651 1689 .. 1637 1690 .. 0.83 4 ! 70.3 0.0 7.3e-24 1.2e-19 269 336 .. 1783 1850 .. 1774 1869 .. 0.90 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 7.3e-10 HHS-EEETTEEEEEEE---HHHHHHHHHHHHH CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlkarrewtdv 301 +k ++t+kG Pirl+ ++s e l++rrew d+ T012231_3 322 QKKQITYKGAPIRLAGNFSVEILQTRREWQDL 353 689**************************985 PP == domain 2 score: -8.4 bits; conditional E-value: 1 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 54 kdfykelkelieskakelealkekeentek 83 kd+ ke k + + k++ e +ke++ + +k T012231_3 812 KDMSKERKKQERKKGRKKERKKERKKERKK 841 223333333333333333333333222222 PP == domain 3 score: 8.6 bits; conditional E-value: 4.1e-05 ....XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 136 tidaslssrideleervsaaedeieeidrevkerekrkki 175 + sls+ri+++ er s + d++ e+ k +ek+ k+ T012231_3 1651 A-LVSLSNRIEQVKERNSELKDKVFELTPSNKDKEKKHKK 1689 3.369*****************************998875 PP == domain 4 score: 70.3 bits; conditional E-value: 7.3e-24 HHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEET.TTEEEEESSSSEEEESSHHH CS Transposase_22 269 rekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrlly.PaklsiiidGeikvfidktk 336 e +vt+kGkP rltad+saetl+ar w++++++lk++++qPr+ P klsii +G i+ f k+k T012231_3 1783 TEAPQVTYKGKPNRLTADFSAETLQARMGWGPIFNLLKQNNYQPRI-L*PVKLSIIYEGKIRSFSGKQK 1850 5778*****************************************8.8999***************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1208 (0.0740832); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.26s 00:00:01.45 Elapsed: 00:00:00.52 # Mc/sec: 19404.13 // Query: T294263_1 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.45 # Mc/sec: 3140.56 // Query: T294263_2 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.45 # Mc/sec: 3140.56 // Query: T294263_3 [L=493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 3000.83 // Query: T215675_1 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47 # Mc/sec: 8856.40 // Query: T215675_2 [L=1455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8671.89 // Query: T215675_3 [L=1454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-19 70.8 0.2 1.5e-19 70.3 0.2 1.2 1 GPS2_interact G-protein pathway suppressor 2-interacting dom Domain annotation for each model (and alignments): >> GPS2_interact G-protein pathway suppressor 2-interacting domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.3 0.2 9.4e-24 1.5e-19 2 59 .. 200 258 .. 199 260 .. 0.93 Alignments for each domain: == domain 1 score: 70.3 bits; conditional E-value: 9.4e-24 GPS2_interact 2 tpkvEaiSpt.lpseekeeqedsplrlskeeLlqqidkVDrEiakveqqiskLkkkqqe 59 +k+Ea+S++ l +++ ++q+ sp++lskeeL+q++d+VDrEiakveqqi+kLkkkq + T215675_3 200 GGKHEAPSSPiLGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQVK 258 6899*998776**********************************************76 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 8156.17 // Query: T124766_1 [L=1494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.22s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 8722.61 // Query: T124766_2 [L=1493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 8542.44 // Query: T124766_3 [L=1493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 8716.77 // Query: T041024_1 [L=5267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-06 25.9 0.0 9.2e-06 25.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.0 5.6e-10 9.2e-06 117 158 .. 735 776 .. 728 787 .. 0.85 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 5.6e-10 .......TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 117 rvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 +n ++ e ++ k+g++qG++lSPllfn++++ l r +r++ T041024_1 735 ILNRQKLEAIPLKTGTRQGCPLSPLLFNRVLEVLVRAIRQEK 776 457778899******************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.27u 0.28s 00:00:01.55 Elapsed: 00:00:00.56 # Mc/sec: 26435.07 // Query: T041024_2 [L=5267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.28s 00:00:01.50 Elapsed: 00:00:00.56 # Mc/sec: 26907.13 // Query: T041024_3 [L=5267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.25s 00:00:01.50 Elapsed: 00:00:00.55 # Mc/sec: 27396.35 // Query: T239482_1 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 4279.80 // Query: T239482_2 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-52 175.9 1.8 7.7e-52 175.9 1.8 1.6 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0022 17.5 0.3 0.0053 16.2 0.3 1.5 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.094 13.0 8.4 0.33 11.3 0.0 3.4 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.9 1.8 1.4e-55 7.7e-52 1 222 [] 81 337 .. 81 337 .. 0.95 2 ? -3.7 0.1 1.2 6.4e+03 41 41 .. 632 632 .. 608 666 .. 0.49 Alignments for each domain: == domain 1 score: 175.9 bits; conditional E-value: 1.4e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l++ T239482_2 81 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKT 180 899999999999***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelq 181 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ ++q T239482_2 181 LNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpMVSAQ 280 ******************************99*********************************99***************************6666** PP HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 182 elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239482_2 281 NLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 337 *************************99999988877761156678*********986 PP == domain 2 score: -3.7 bits; conditional E-value: 1.2 - CS RVT_1 41 n 41 + T239482_2 632 H 632 1 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.3 9.7e-07 0.0053 47 111 .. 406 475 .. 395 478 .. 0.78 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 9.7e-07 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239482_2 406 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 475 5678888985444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 1.3 2.4 1.3e+04 11 22 .. 450 461 .. 448 467 .. 0.72 2 ? 11.3 0.0 6e-05 0.33 3 30 .. 517 544 .. 515 546 .. 0.90 3 ? 5.5 0.3 0.004 22 23 50 .. 613 640 .. 607 642 .. 0.86 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 2.4 YlbE 11 pyWYrkLnRnpe 22 +WY + nR+ + T239482_2 450 TAWYWYQNRDID 461 578888888755 PP == domain 2 score: 11.3 bits; conditional E-value: 6e-05 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239482_2 517 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 544 677999*******************985 PP == domain 3 score: 5.5 bits; conditional E-value: 0.004 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239482_2 613 LISRIYNELKQIYKKKTNNHIKKWAKDM 640 5778889***************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 888 (0.0544585); expected 326.1 (0.02) Passed bias filter: 372 (0.0228137); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 4458.13 // Query: T239482_3 [L=748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 4552.98 // Query: T346739_1 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 11673.31 // Query: T346739_2 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-64 216.3 8.9 2e-57 194.6 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.6 5.4 1.2e-61 2e-57 179 299 .. 1058 1178 .. 1049 1186 .. 0.94 2 ! 23.0 0.1 1.8e-09 2.9e-05 340 367 .. 1221 1250 .. 1219 1251 .. 0.96 Alignments for each domain: == domain 1 score: 194.6 bits; conditional E-value: 1.2e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346739_2 1058 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1150 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346739_2 1151 GKVNHKWKPIRLTADLSAETLQARREWG 1178 ***************************8 PP == domain 2 score: 23.0 bits; conditional E-value: 1.8e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346739_2 1221 FVTTRPALQELLKEapNMERKNRYQPLQKH 1250 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 11673.31 // Query: T346739_3 [L=2081] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-35 121.3 1.9 6.6e-35 120.5 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 5e-14 51.8 14.6 2.6e-07 29.7 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.026 14.3 0.1 0.059 13.2 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.5 1.9 1.2e-38 6.6e-35 31 210 .. 1662 1854 .. 1653 1872 .. 0.93 Alignments for each domain: == domain 1 score: 120.5 bits; conditional E-value: 1.2e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346739_3 1662 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1759 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346739_3 1760 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 1854 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 2.9 4.8e-11 2.6e-07 6 83 .. 913 998 .. 908 1010 .. 0.79 2 ! 27.6 3.9 2.1e-10 1.1e-06 145 182 .. 1024 1061 .. 1024 1065 .. 0.96 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 4.8e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346739_3 913 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 998 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.6 bits; conditional E-value: 2.1e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346739_3 1024 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1061 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 1.1e-05 0.059 24 48 .. 981 1005 .. 979 1008 .. 0.91 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.1e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346739_3 981 KLYQRLQELLSRIASLEKNVNDLME 1005 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2081 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1122 (0.068809); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 11448.82 // Query: T316516_1 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 10193.90 // Query: T316516_2 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 7928.59 // Query: T316516_3 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 8763.17 // Query: T232837_1 [L=3421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.71 # Mc/sec: 13784.37 // Query: T232837_2 [L=3420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.29s 00:00:01.70 Elapsed: 00:00:00.75 # Mc/sec: 13045.38 // Query: T232837_3 [L=3420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.76 # Mc/sec: 12873.74 // Query: T293979_1 [L=4061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.80 # Mc/sec: 14522.29 // Query: T293979_2 [L=4061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.69 # Mc/sec: 16837.44 // Query: T293979_3 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.38s 00:00:01.66 Elapsed: 00:00:00.68 # Mc/sec: 17080.84 // Query: T137446_1 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.62 # Mc/sec: 11092.64 // Query: T137446_2 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.64 # Mc/sec: 10745.99 // Query: T137446_3 [L=2404] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2404 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 9049.26 // Query: T110531_1 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 9049.48 // Query: T110531_2 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 9925.23 // Query: T110531_3 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 8914.18 // Query: T198631_1 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.72 # Mc/sec: 7326.90 // Query: T198631_2 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.74 # Mc/sec: 7128.88 // Query: T198631_3 [L=1844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 7645.46 // Query: T040988_1 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.70 # Mc/sec: 5844.27 // Query: T040988_2 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.77 # Mc/sec: 5309.25 // Query: T040988_3 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0046 17.2 0.0 0.015 15.6 0.0 1.9 2 Ank Ankyrin repeat 0.0052 17.2 0.0 0.0094 16.4 0.0 1.4 1 Ank_2 Ankyrin repeats (3 copies) 0.0077 16.5 0.0 0.019 15.3 0.0 1.7 1 Ank_3 Ankyrin repeat ------ inclusion threshold ------ 0.087 13.1 0.1 0.18 12.1 0.1 1.5 1 Ank_5 Ankyrin repeats (many copies) Domain annotation for each model (and alignments): >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 3.7e-06 0.015 3 24 .. 1 22 [. 1 32 [. 0.85 2 ? -3.7 0.0 4 1.6e+04 5 9 .. 1275 1279 .. 1275 1309 .. 0.43 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 3.7e-06 BBHHHHHHHHTTHHHHHHHHTT CS Ank 3 nTPLHlAatngkkriiklLLhG 24 +T+LH+A+ ng+++++ +L+++ T040988_3 1 RTALHWACVNGHAEVVTFLVDR 22 5*****************9954 PP == domain 2 score: -3.7 bits; conditional E-value: 4 HHHHH CS Ank 5 PLHlA 9 PLHl T040988_3 1275 PLHLS 1279 89983 PP >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 2.3e-06 0.0094 55 80 .. 1 26 [. 1 30 [. 0.83 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 2.3e-06 Ank_2 55 rtaLhlAarsghleivklLlekgadi 80 rtaLh+A+ +gh e+v +L+++++++ T040988_3 1 RTALHWACVNGHAEVVTFLVDRKCQL 26 69999999999999999999877665 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 4.7e-06 0.019 3 28 .. 1 25 [. 1 28 [. 0.87 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 4.7e-06 Ank_3 3 etpLhlAarsgrpeivkfLlenlgad 28 +t+Lh+A+ +g+ e+v fL++ + + T040988_3 1 RTALHWACVNGHAEVVTFLVD-RKCQ 25 7*******************9.6654 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 4.3e-05 0.18 18 44 .. 2 28 .. 1 32 [. 0.89 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 4.3e-05 Ank_5 18 tpLhlAakggalevvrlLlargadlnl 44 t+Lh+A+ +g++evv +L++r + l++ T040988_3 2 TALHWACVNGHAEVVTFLVDRKCQLDV 28 9******************99888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 6593.75 // Query: T342973_1 [L=2941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.71 # Mc/sec: 11850.28 // Query: T342973_2 [L=2940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 11366.00 // Query: T342973_3 [L=2940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.27s 00:00:01.49 Elapsed: 00:00:00.74 # Mc/sec: 11366.00 // Query: T090276_1 [L=4465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 861 (0.0528026); expected 326.1 (0.02) Passed bias filter: 340 (0.0208512); expected 326.1 (0.02) Passed Vit filter: 215 (0.0131853); expected 16.3 (0.001) Passed Fwd filter: 54 (0.00331166); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.55u 0.52s 00:00:06.07 Elapsed: 00:00:01.54 # Mc/sec: 8294.55 // Query: T090276_2 [L=4465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 801 (0.049123); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 144 (0.00883111); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.26u 0.51s 00:00:04.76 Elapsed: 00:00:01.06 # Mc/sec: 12050.57 // Query: T090276_3 [L=4465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1230 (0.0754324); expected 326.1 (0.02) Passed bias filter: 436 (0.0267386); expected 326.1 (0.02) Passed Vit filter: 358 (0.0219551); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.64u 0.57s 00:00:05.21 Elapsed: 00:00:01.27 # Mc/sec: 10057.96 // Query: T351102_1 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-21 74.1 7.5 1.5e-20 72.6 4.6 2.7 2 Transposase_1 Transposase (partial DDE domain) 0.0028 17.3 0.4 0.0051 16.4 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.053 13.6 0.0 0.13 12.4 0.0 1.6 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.058 3.1e+02 25 38 .. 818 831 .. 814 833 .. 0.80 2 ! 72.6 4.6 2.8e-24 1.5e-20 14 79 .. 1003 1072 .. 982 1073 .. 0.86 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.058 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351102_1 818 EKLSKNAMLTIVWS 831 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 2.8e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351102_1 1003 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1072 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 9.5e-07 0.0051 55 143 .. 1043 1136 .. 977 1138 .. 0.75 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9.5e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351102_1 1043 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1136 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 2.4e-05 0.13 5 23 .. 1850 1868 .. 1847 1874 .. 0.86 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.4e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351102_1 1850 NLVCQVFPREYLANHNCGR 1868 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 480 (0.029437); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.72 # Mc/sec: 7648.75 // Query: T351102_2 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 8098.67 // Query: T351102_3 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.037 13.8 0.1 0.08 12.7 0.1 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 4.9e-06 0.08 15 43 .. 1007 1039 .. 1003 1046 .. 0.80 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 4.9e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351102_3 1007 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1039 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.63 # Mc/sec: 8736.88 // Query: T103711_1 [L=7341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-165 549.5 32.1 7.4e-142 472.4 20.5 2.2 2 Transposase_22 L1 transposable element 0.0052 16.9 0.0 0.13 12.4 0.0 2.3 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.14 12.6 2.8 0.25 11.7 2.8 1.4 1 Spectrin Spectrin repeat 0.15 11.7 10.5 0.26 10.9 10.5 1.3 1 IncA IncA protein 0.75 10.3 5.0 1.6 9.2 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.98 8.6 12.3 1.7 7.8 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 9.4 6.3 12.2 0.034 14.2 2.1 2.1 2 Med2 Mediator complex subunit 2 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.7 3.7 9e-27 2.1e-23 166 247 .. 699 780 .. 690 782 .. 0.93 2 ! 472.4 20.5 3.2e-145 7.4e-142 1 368 [] 6896 7231 .. 6896 7231 .. 0.97 Alignments for each domain: == domain 1 score: 82.7 bits; conditional E-value: 9e-27 HHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHH.HT---EEEEEEESSSS-TSSSS CS Transposase_22 166 vkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkk.eanviiqeiyrtPnrqdskras 247 ++ + kr+k++e slq+i+d+vkrPnlrliGv++s+ e+++klen+l+ i+enf nl++ n++i+ei++t +r++s+ra+ T103711_1 699 TRLERKRMKRNEPSLQEIWDYVKRPNLRLIGVPDSDRENGTKLENTLQYNIQENFSNLAR*A-NIQIREIQKTSQRHSSRRAT 780 466789****************************************************9555.89****************98 PP == domain 2 score: 472.4 bits; conditional E-value: 3.2e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103711_1 6896 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 6981 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103711_1 6982 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 7038 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103711_1 7039 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 7131 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103711_1 7132 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 7224 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103711_1 7225 QLLQNHA 7231 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.11 2.5e+02 20 51 .. 953 989 .. 951 1026 .. 0.74 2 ! 12.4 0.0 5.6e-05 0.13 1 72 [. 7266 7335 .. 7266 7340 .. 0.83 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.11 HHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.....E CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF Exo_endo_phos 20 aladllkaydadvlglqEvdddelsrlplla.....d 51 + +++k++d+ v ++qE++ ++ +l+ T103711_1 953 QTGKWIKSQDPSVCCIQETHLMCKDTYRLNTkgwrnI 989 5678**************9988877766666666542 PP == domain 2 score: 12.4 bits; conditional E-value: 5.6e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103711_1 7266 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 7335 699****....7778899*******************9988877766666776667788888999999999976 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 2.8 0.00011 0.25 3 94 .. 6961 7050 .. 6959 7052 .. 0.92 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00011 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103711_1 6961 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 7050 568999**************99..677778889999999************************************************99875 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 10.5 0.00011 0.26 76 175 .. 6920 7043 .. 6886 7050 .. 0.83 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00011 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103711_1 6920 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 7013 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103711_1 7014 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 7043 999988888888888888888888665554 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 5.0 0.00069 1.6 3 95 .. 6947 7048 .. 6946 7050 .. 0.70 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00069 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103711_1 6947 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 7041 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103711_1 7042 QEIWDYV 7048 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.3 0.00073 1.7 30 124 .. 6949 7043 .. 6945 7050 .. 0.69 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00073 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103711_1 6949 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 7043 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.5 2.8 7 1.6e+04 77 96 .. 4971 4985 .. 4959 4988 .. 0.40 2 ? 14.2 2.1 1.4e-05 0.034 44 96 .. 6954 7006 .. 6947 7011 .. 0.85 Alignments for each domain: == domain 1 score: -4.5 bits; conditional E-value: 7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103711_1 4971 SKKKKRKKERKKR-----KK 4985 2333332222222.....22 PP == domain 2 score: 14.2 bits; conditional E-value: 1.4e-05 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103711_1 6954 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 7006 5556799*********************************9999987777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 579 (0.0355084); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 2.71u 0.39s 00:00:03.10 Elapsed: 00:00:00.79 # Mc/sec: 26583.99 // Query: T103711_2 [L=7340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00085 18.8 0.1 0.00085 18.8 0.1 1.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.1 5.2e-08 0.00085 1 15 [. 1892 1906 .. 1892 1909 .. 0.91 2 ? -3.1 0.6 0.38 6.2e+03 5 9 .. 4014 4018 .. 4014 4018 .. 0.94 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 5.2e-08 DUF1725 1 kFagKWMELEnIILS 15 +Fa +WM+LE+IILS T103711_2 1892 SFAVTWMKLETIILS 1906 7999**********9 PP == domain 2 score: -3.1 bits; conditional E-value: 0.38 DUF1725 5 KWMEL 9 +WM+L T103711_2 4014 TWMDL 4018 9***9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.14u 0.46s 00:00:02.60 Elapsed: 00:00:00.87 # Mc/sec: 24136.20 // Query: T103711_3 [L=7340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-63 213.8 26.2 3.3e-56 190.6 2.0 3.1 3 Transposase_22 L1 transposable element 3.7e-12 46.1 0.0 6.3e-12 45.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 6.2 2.8e-10 2.3e-06 6 84 .. 566 652 .. 561 663 .. 0.82 2 ! 8.1 2.6 0.00011 0.93 145 175 .. 677 707 .. 677 712 .. 0.90 3 ! 190.6 2.0 4.1e-60 3.3e-56 245 367 .. 777 901 .. 771 902 .. 0.98 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 2.8e-10 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntekq 84 + +k n k +++s+P+k+++ssPa e+++++++f++l + ++k+ + +++ke + +++ke + +k +ee ek T103711_3 566 KNQCKKAKNFKKQNASSPPKNHNSSPAR--EQNWMENEFDKLTEVGFKRwviTNSSKVKEHVLTQSKEAKnLEKMLEElltritSLEKN 652 3456889999*****************9..******************966668999************98999999965554444444 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00011 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkki 175 id+ eer+s +ed+++ei++e k rek+ + T103711_3 677 IDQAEERLSQIEDQLDEIKHEDKIREKKNEK 707 799***********************98654 PP == domain 3 score: 190.6 bits; conditional E-value: 4.1e-60 SSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHH CS Transposase_22 245 rassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrd 339 ++ +r iivr+tkv++k+k+lka+rek vt kGkPi+lt dlsaetl+arrew++++++lkek+f+Pr++yPak s+i++Geik f dk++lrd T103711_3 777 KSNPRNIIVRFTKVEMKKKMLKAAREKHWVTHKGKPIKLTVDLSAETLQARREWGPIFNTLKEKNFRPRISYPAKPSFISKGEIKSFTDKQMLRD 871 5789******************************************************************************************* PP HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trP+l++llke ++erk+ yq+l+++ T103711_3 872 FVTTRPTLQDLLKEalNMERKNGYQPLQKH 901 ****************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.3 0.0 7.8e-16 6.3e-12 112 179 .. 1289 1365 .. 1282 1392 .. 0.90 Alignments for each domain: == domain 1 score: 45.3 bits; conditional E-value: 7.8e-16 ............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH CS RVT_1 112 rsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee 179 ++ + +ng++ + ++ k+g++qG++lSPllfn+++ l r++r++ ++v+l+++aDD++ + +++++ T103711_3 1289 PTGIIILNGQKQKAFPLKTGTRQGCPLSPLLFNILLKVLVRKIRQEKvimaiqigrEEVKLSLFADDMISYLENPSS 1365 5667788***99*********************************99**********************99999765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.33u 0.45s 00:00:02.78 Elapsed: 00:00:01.02 # Mc/sec: 20586.76 // Query: T035508_1 [L=1211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.72 8.4 70.9 1.2 7.7 70.9 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 70.9 7.1e-05 1.2 116 222 .. 63 167 .. 44 187 .. 0.37 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 7.1e-05 XXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 116 kkeekkkkeekekesekerkqkeel....kekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgke 211 +k+e+ k++++e+e+ ker +ke + ke++++++keke++++k + k++++eker+re+++er+k++k ++k+++ke++k+++k++k++++k+ T035508_1 63 RKKERGKERKEERERRKER-KKERKkerkKERKKERKKEKERNREKREGKRKKNEKERGRERKKERKKERK-----RKKERKKERKKERKKERKEKKRKK 156 2222222222222222222.222220000222222333333333333333333333333333333322222.....223333344444444444444444 PP XXXXXXXXXXX CS MIP-T3 212 eerskdeerek 222 +er++++e++ T035508_1 157 KERQRKKEKDS 167 44444433332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2156 (0.132221); expected 326.1 (0.02) Passed bias filter: 680 (0.0417024); expected 326.1 (0.02) Passed Vit filter: 445 (0.0272906); expected 16.3 (0.001) Passed Fwd filter: 109 (0.00668466); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.70u 0.54s 00:00:03.24 Elapsed: 00:00:00.95 # Mc/sec: 3646.81 // Query: T035508_2 [L=1211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2185 (0.134); expected 326.1 (0.02) Passed bias filter: 619 (0.0379615); expected 326.1 (0.02) Passed Vit filter: 421 (0.0258187); expected 16.3 (0.001) Passed Fwd filter: 78 (0.00478352); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.45s 00:00:02.74 Elapsed: 00:00:00.82 # Mc/sec: 4224.96 // Query: T035508_3 [L=1210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 5.6 27.5 7 5.2 27.5 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 27.5 0.00043 7 227 316 .. 65 159 .. 45 192 .. 0.40 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.00043 Presenilin 227 eeaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse.......seeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeeee 316 +++e+++++k+++e+++e+k+e+++e++ke+++e+e +++++++++ + +e+++++++e+++e+++++++++e+++++++++e++ee+++ T035508_3 65 RKRERKKRRKRKKERKKERKKERKKERKKERKKEREREKQRKERRKkkee*erE--RERKKERKKERKKEKERKKERKKERKKERKKRKEKKEERKT 159 222222222222222222222222222222222222222222222245678652..33333333332222222222222222222222222222221 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1797 (0.110205); expected 326.1 (0.02) Passed bias filter: 459 (0.0281491); expected 326.1 (0.02) Passed Vit filter: 323 (0.0198087); expected 16.3 (0.001) Passed Fwd filter: 79 (0.00484484); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.98u 0.44s 00:00:02.42 Elapsed: 00:00:00.94 # Mc/sec: 3682.56 // Query: T051503_1 [L=1967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.81 # Mc/sec: 6947.23 // Query: T051503_2 [L=1967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 9076.21 // Query: T051503_3 [L=1966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 7600.53 // Query: T175810_1 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.78 # Mc/sec: 7801.26 // Query: T175810_2 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 10.9 0.3 0.19 10.3 0.3 1.1 1 DUF3373 Protein of unknown function (DUF3373) Domain annotation for each model (and alignments): >> DUF3373 Protein of unknown function (DUF3373) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.3 1.1e-05 0.19 178 200 .. 1189 1211 .. 1185 1219 .. 0.87 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 1.1e-05 DUF3373 178 dvpiwfSiGRRPstdGvpanlre 200 p+w+S+ RRP+t G+++ +r+ T175810_2 1189 SLPFWVSLARRPATSGYLSRMRS 1211 679*****************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 9361.52 // Query: T175810_3 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.70 # Mc/sec: 8692.84 // Query: T008081_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.42s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 3686.84 // Query: T008081_2 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.39 10.9 34.7 0.58 10.3 34.7 1.1 1 PTPRCAP Protein tyrosine phosphatase receptor type C-associ 0.85 7.7 24.7 1.1 7.3 24.7 1.1 1 CDC45 CDC45-like protein 3.4 6.9 35.3 4.9 6.4 35.3 1.1 1 SDA1 SDA1 Domain annotation for each model (and alignments): >> PTPRCAP Protein tyrosine phosphatase receptor type C-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 34.7 0.00011 0.58 39 124 .. 100 183 .. 72 196 .. 0.63 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00011 PTPRCAP 39 edgeedeeeEdqedeedeeedsedle.ggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedaegeasggsaeaLLsdLha 124 e++eed eeE++e+ee+eee++ e ++eee+e++eee++e+ee +ee+ +e++ee +eek++k++a + ++g ++++Ls L+ T008081_2 100 EEKEEDGEEEKEEEEEEEEEEE---E*EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKKKACARETEGLGDVMLSALKM 183 5666666666666666655543...2222222222333333333333344444445555557778878888899**********996 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 24.7 0.0002 1.1 118 194 .. 108 176 .. 99 228 .. 0.31 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0002 CDC45 118 eereayealeeeeesdedd.........eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse.........p 194 ee+e e+ eeee + eeeee+++eeeeeeeee+eeeeee++ee+k+k+k k+ T008081_2 108 EEKE-EEEEEEEE-----Eee*eeeeeeEEEEEEEEEEEEEEEEEEEEEEEEEGEEEKEKKK-KA-------------------CareteglgdV 176 1111.11111111.....11222111111111111111111111111111111111111111.11...................11223334431 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 35.3 0.00091 4.9 103 179 .. 105 164 .. 88 209 .. 0.36 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00091 SDA1 103 dwevesdddseedseggwidvesdee.ieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekekv 179 d e e+ e++ + e++ee +ee++e+e+eeeeee eeeeeeeeeeeeeeee eeekek+k+ T008081_2 105 DGEEEK--------EEEEEEEEEEEE*EEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEGEEEKEKKKK 164 011110........0000000111112111111111111111..........11111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1305 (0.0800319); expected 326.1 (0.02) Passed bias filter: 453 (0.0277812); expected 326.1 (0.02) Passed Vit filter: 182 (0.0111615); expected 16.3 (0.001) Passed Fwd filter: 64 (0.00392494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.50u 0.37s 00:00:01.87 Elapsed: 00:00:00.89 # Mc/sec: 2941.19 // Query: T008081_3 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0017 18.4 4.7 0.0024 17.9 4.7 1.1 1 DDHD DDHD domain ------ inclusion threshold ------ 0.037 14.3 14.9 0.058 13.7 14.9 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.23 11.4 7.2 0.31 11.0 7.2 1.1 1 RP-C_C Replication protein C C-terminal region 0.24 10.0 27.1 0.33 9.5 27.1 1.1 1 NPR3 Nitrogen Permease regulator of amino acid trans 0.33 11.3 8.7 0.66 10.3 8.7 1.4 1 Afi1 Docking domain of Afi1 for Arf3 in vesicle traf Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 4.7 7.4e-07 0.0024 120 184 .. 99 163 .. 63 243 .. 0.62 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 7.4e-07 DDHD 120 lnrslklgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee 184 +++ +k++++++++ ++++k+++++++++k+++++k+++++++++++k++++++k+e ++k+ ++ T008081_3 99 WKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRR 163 33333333333333333333333333333333332222222222222222222211111111111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 14.9 1.8e-05 0.058 26 77 .. 107 158 .. 49 173 .. 0.53 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.8e-05 RNA_pol_Rpc4 26 dkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaakl 77 +k+++ ++++k+k++++++++k++++++++kk+kkk++kkkkkkk+k++k+ T008081_3 107 KKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKK 158 2222222222222222222222222222222222222222222222222221 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 7.2 9.4e-05 0.31 37 100 .. 93 169 .. 90 217 .. 0.66 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 9.4e-05 RP-C_C 37 eevenaleaklkaenssanesqnerhiqnsnpesssesepasekereekeaaaasaeaepsek.............k 100 +++ n++++k+k e+++++ ++++++++s+++ +++++++++k++++k++++++++++++++ k T008081_3 93 TRILNRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEkkkkkrrrkhvreK 169 67889999999999999999999999999999655554433333333322222222222222223334444444443 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 27.1 0.0001 0.33 42 112 .. 97 167 .. 87 198 .. 0.51 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0001 NPR3 42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 +w+k+kk +kk+k++r++++k+kksk+++kk+ +++k++++++kk++k+++++++k++++++k+ +++ T008081_3 97 NRWKKKKKMEKKKKKRRKKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKRRRKHVR 167 68999977654444444444444444444443333333333333333332222222222222222222222 PP >> Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 8.7 0.0002 0.66 60 102 .. 114 156 .. 54 178 .. 0.53 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.0002 Afi1 60 eeeeleeeekknklekrkkkksededdvdeedeeeeddnedld 102 +++++++++kk++++krkkkk++++++ +++++++++++++++ T008081_3 114 KKKKKKKKSKKKRKKKRKKKKKKKKKKKKKKKKKKKKKKKKEK 156 1111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3250 (0.199313); expected 326.1 (0.02) Passed bias filter: 1037 (0.0635962); expected 326.1 (0.02) Passed Vit filter: 632 (0.0387587); expected 16.3 (0.001) Passed Fwd filter: 119 (0.00729793); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.39u 0.46s 00:00:02.85 Elapsed: 00:00:00.92 # Mc/sec: 2842.17 // Query: T000050_1 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 6763.51 // Query: T000050_2 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.7 8.1 10.6 35 4.6 0.1 5.1 6 Phenol_monoox Phenol hydroxylase conserved region Domain annotation for each model (and alignments): >> Phenol_monoox Phenol hydroxylase conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.28 4.6e+03 18 30 .. 625 637 .. 624 641 .. 0.88 2 ? 4.6 0.1 0.0022 35 16 30 .. 691 705 .. 690 711 .. 0.88 3 ? 0.3 0.0 0.045 7.3e+02 18 36 .. 761 779 .. 759 793 .. 0.77 4 ? -0.7 0.0 0.097 1.6e+03 18 30 .. 805 817 .. 803 822 .. 0.87 5 ? -0.7 0.0 0.097 1.6e+03 18 30 .. 873 885 .. 871 890 .. 0.87 6 ? 4.6 0.1 0.0022 35 16 30 .. 983 997 .. 982 1003 .. 0.88 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.28 Phenol_monoox 18 ddhllFcaPfalp 30 + hll c+ +++p T000050_2 625 PGHLLSCSTACWP 637 57*********98 PP == domain 2 score: 4.6 bits; conditional E-value: 0.0022 Phenol_monoox 16 gwddhllFcaPfalp 30 w+ hll c+++++p T000050_2 691 AWPGHLLSCSAACWP 705 6*************8 PP == domain 3 score: 0.3 bits; conditional E-value: 0.045 Phenol_monoox 18 ddhllFcaPfalplppdmp 36 + hll c+++++p + T000050_2 761 PGHLLSCSAACWPQRTRVC 779 68**********9766555 PP == domain 4 score: -0.7 bits; conditional E-value: 0.097 Phenol_monoox 18 ddhllFcaPfalp 30 + hll c+++++p T000050_2 805 PGHLLSCSAACWP 817 68*********98 PP == domain 5 score: -0.7 bits; conditional E-value: 0.097 Phenol_monoox 18 ddhllFcaPfalp 30 + hll c+++++p T000050_2 873 PGHLLSCSAACWP 885 68*********98 PP == domain 6 score: 4.6 bits; conditional E-value: 0.0022 Phenol_monoox 16 gwddhllFcaPfalp 30 w+ hll c+++++p T000050_2 983 AWPGHLLSCSAACWP 997 6*************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 6473.65 // Query: T000050_3 [L=1584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 14.2 0.2 1.4e+02 2.5 0.0 4.9 6 RAMP4 Ribosome associated membrane protein RAMP4 Domain annotation for each model (and alignments): >> RAMP4 Ribosome associated membrane protein RAMP4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.14 2.3e+03 10 27 .. 5 22 .. 2 29 .. 0.78 2 ? -0.1 0.0 0.057 9.3e+02 5 28 .. 34 57 .. 31 68 .. 0.79 3 ? 0.7 0.0 0.031 5.1e+02 5 39 .. 68 102 .. 64 103 .. 0.83 4 ? 2.4 0.0 0.0092 1.5e+02 6 39 .. 173 206 .. 169 207 .. 0.83 5 ? -0.9 0.0 0.1 1.6e+03 6 27 .. 277 298 .. 273 305 .. 0.78 6 ? 2.5 0.0 0.0084 1.4e+02 5 38 .. 310 343 .. 307 345 .. 0.83 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.14 RAMP4 10 nekFaknitkrGkvpksl 27 + +++ t+rG+v+++ T000050_3 5 TQHHTQGLTHRGHVNTTH 22 67788888******9986 PP == domain 2 score: -0.1 bits; conditional E-value: 0.057 RAMP4 5 emrrknekFaknitkrGkvpkslk 28 e++ + + +++ t+rG+v ++ + T000050_3 34 ELTPRTQHHTQGLTHRGHVDTTHT 57 5666889999999******99865 PP == domain 3 score: 0.7 bits; conditional E-value: 0.031 RAMP4 5 emrrknekFaknitkrGkvpkslkkkekkspvgpw 39 e++ + + +++ +rG+v ++ + + + +pv p+ T000050_3 68 ELTPRTQHHTQGLMHRGHVDTTHTFSHSTHPVTPM 102 55667888999999*******99988899999885 PP == domain 4 score: 2.4 bits; conditional E-value: 0.0092 RAMP4 6 mrrknekFaknitkrGkvpkslkkkekkspvgpw 39 ++ + + +++ t+rG+v ++ + + + +pv p+ T000050_3 173 LTPRTQHHTRGLTHRGHVDTTHTFSHSTHPVTPM 206 566788899999*********9988899999885 PP == domain 5 score: -0.9 bits; conditional E-value: 0.1 RAMP4 6 mrrknekFaknitkrGkvpksl 27 ++ + + +++ t+rG+v+++ T000050_3 277 LTPRTQHHTRGLTHRGHVNTTH 298 566788899999******9986 PP == domain 6 score: 2.5 bits; conditional E-value: 0.0084 RAMP4 5 emrrknekFaknitkrGkvpkslkkkekkspvgp 38 e++ + + +++ t+rG+v ++ + + + +p+ p T000050_3 310 ELTPRTQHHTQGLTHRGHVDTTHTFSHSTHPITP 343 5666889999999********9998888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 6567.47 // Query: T216724_1 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 7328.13 // Query: T216724_2 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 6903.31 // Query: T216724_3 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 6899.16 // Query: T064835_1 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-13 50.8 5.2 2.9e-13 50.0 5.2 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.0 5.2 1.8e-17 2.9e-13 1 119 [. 501 619 .. 501 632 .. 0.87 Alignments for each domain: == domain 1 score: 50.0 bits; conditional E-value: 1.8e-17 XXXXXXXXXXXXXXHHHHHHHHHHHHHHH.HHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHH CS GP41 1 vaavslaqevqaatlvnelsknvlkalet.QeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWn 98 va +s++ +vq+at+v++l +nv + l Q id+k a ++al+ ++ +G+ +l ++++l+C + k i vT++p+n+s sW+ vk+hl T064835_1 501 VAVASITESVQTATFVDNLARNVSNKLLL*QG-IDQKHLACLQALKAALEYVGEPQDALAFRQQLNCDWEQKHIYVTSLPWNQSIhSWDEVKQHLWRTL- 598 5789*******************999976765.5777778999999999999********************************99********97764. PP XHHHHHHHHHHHHHHHHHHHH CS GP41 99 ntevsldlsklhneiediqnq 119 + ++ d +l+ +i d+ n+ T064835_1 599 HDNLTADSRQLKTKILDSLNA 619 568999999999999998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.82 # Mc/sec: 5941.46 // Query: T064835_2 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.72 # Mc/sec: 6766.66 // Query: T064835_3 [L=1703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.75 # Mc/sec: 6495.99 // Query: T018730_1 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-09 38.6 0.1 1.1e-09 38.6 0.1 2.4 2 DUF3496 Domain of unknown function (DUF3496) 0.0025 17.3 4.5 0.0025 17.3 4.5 1.8 2 DUF4795 Domain of unknown function (DUF4795) ------ inclusion threshold ------ 3.8 7.1 10.7 6.3 6.4 10.7 1.3 1 IncA IncA protein Domain annotation for each model (and alignments): >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 9.8 0.13 7.1e+02 8 65 .. 66 121 .. 62 139 .. 0.78 2 ! 38.6 0.1 1.9e-13 1.1e-09 64 107 .. 149 191 .. 143 193 .. 0.95 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.13 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018730_1 66 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 121 667789***********9..89******999994466666665.455567788877777 PP == domain 2 score: 38.6 bits; conditional E-value: 1.9e-13 DUF3496 64 kllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipre 107 +l++ekeq +++lstl+tr esPcv+nl+ s++lnrk+ip++ T018730_1 149 QLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SIGLNRKYIPQM 191 89*****************************.**********86 PP >> DUF4795 Domain of unknown function (DUF4795) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 4.5 4.5e-07 0.0025 15 106 .. 44 139 .. 13 172 .. 0.84 2 ? -1.2 0.2 0.22 1.2e+03 166 182 .. 423 435 .. 422 444 .. 0.82 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 4.5e-07 DUF4795 15 aieklqeelekleekvkslekrledkekklealkkqieeLekvkadkeeveeel.aekadkeaLatkvsrdqfDeakkeLekmleellekle.....e 106 + + +e+e +++k +l k+++ +++l ++kk +e+ek +dk+ +eee+ ++k e +++v+ ++++e+k+eL++ + +++ekle T018730_1 44 TFDDFMAEKEAVSSKCVNLAKEIQVFQQELLSMKKVQQECEKLEEDKKMLEEEIlNLKTHME--NSMVELSKLQEYKSELDERAMQAVEKLEeihlqI 139 56677789999************************************999999758887776..89************************99444440 PP == domain 2 score: -1.2 bits; conditional E-value: 0.22 DUF4795 166 rkkLlerfdcISCdrpv 182 +++++ cISC +p T018730_1 423 KMYII----CISCSTPF 435 67777....****9986 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 10.7 0.0012 6.3 67 128 .. 67 128 .. 43 140 .. 0.45 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0012 IncA 67 lqsedekiee....srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksv 128 +++++ e ++q+e +le+ ++leee+ l+++ + + el++l+e++ +l e + T018730_1 67 QVFQQ----EllsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQA 128 11111....012224444444444444444444444444444444444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 945 (0.0579541); expected 326.1 (0.02) Passed bias filter: 272 (0.016681); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 3010.47 // Query: T018730_2 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 65 (0.00398626); expected 326.1 (0.02) Passed bias filter: 33 (0.00202379); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.67 # Mc/sec: 2920.61 // Query: T018730_3 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 2835.95 // Query: T369075_1 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.79 # Mc/sec: 5602.16 // Query: T369075_2 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.73 # Mc/sec: 6062.61 // Query: T369075_3 [L=1546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 6142.84 // Query: T248998_1 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.64 # Mc/sec: 7277.24 // Query: T248998_2 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-08 32.9 0.8 5.9e-07 29.5 0.1 2.7 2 V-set Immunoglobulin V-set domain 0.001 19.0 0.1 0.045 13.7 0.0 2.9 2 I-set Immunoglobulin I-set domain 0.0026 17.8 0.0 2.8 8.0 0.0 2.5 2 ig Immunoglobulin domain ------ inclusion threshold ------ 0.071 13.6 0.0 0.67 10.5 0.0 2.5 2 Ig_3 Immunoglobulin domain Domain annotation for each model (and alignments): >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.1 0.85 3.5e+03 15 34 .. 1038 1054 .. 1030 1057 .. 0.81 2 ! 29.5 0.1 1.4e-10 5.9e-07 5 108 .. 1283 1412 .. 1279 1413 .. 0.83 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.85 EEEEEESSSSCCTCSEEEEE CS V-set 15 tLsCtlssseseeslsiyWy 34 +LsC++++s +++s++ + T248998_2 1038 KLSCKYNTS---AFYSMSLF 1054 89*****99...88887765 PP == domain 2 score: 29.5 bits; conditional E-value: 1.4e-10 EEEEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS.......CEEEEEEEETT...................TEEEEESTTTEEEEE.ETTTTEEEE CS V-set 5 svtvaeGesvtLsCtlssseseeslsiyWyrqppgk.......epeelilyysn...................sskegkkkgrfslrg.dpsrsdfsL 75 ++++ + ++vtLsC++s + +e+l+++W r++ ++ ++ +l++ y + +++++ +gr+s+ + +s++++sL T248998_2 1283 ELRAHPFTDVTLSCHFSFVKGTENLEFSWEREDIKQayevednKEYYLLFKYLDffevfsklvyqfhnnteqlEDQNSLYEGRVSVDQaEISEGTLSL 1380 5666777899****999447889999***999988788988886667777777788888888888888***988888888****************** PP EESSESGGG-EEEEEEEESSSEEEEEEEEEEEE CS V-set 76 tiqnlqlsDsGtYfCavvssgegvfgsgtrLtV 108 ++n+ D+++Y C+ ++ g+ +s+++L V T248998_2 1381 LLRNVDFMDEAIYKCS-AITPDGRGESTIKLIV 1412 ****************.6777777777777776 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.0 1.1e-05 0.045 24 90 .] 1301 1412 .. 1275 1412 .. 0.72 2 ? 0.3 0.0 0.16 6.7e+02 29 76 .. 1441 1492 .. 1440 1499 .. 0.81 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.1e-05 EECSSS-EEEEEETTCB-ST..........................................SSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 24 veGepepsvsWakdgselks..........................................sqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 v+G++++++sW +++ + + + rv+v++ e ++ +L ++nv+ De +Y+c a T248998_2 1301 VKGTENLEFSWEREDIKQAYevednkeyyllfkyldffevfsklvyqfhnnteqledqnslyEGRVSVDQAEiseGTLSLLLRNVDFMDEAIYKCSAI 1398 56666666666666433333346666666666666666666666666666666666677777788888888888899********************* PP ETSEEEEEEEEEEE CS I-set 77 nsagkaeakaeLkV 90 g+ e++++L V T248998_2 1399 TPDGRGESTIKLIV 1412 ******99999987 PP == domain 2 score: 0.3 bits; conditional E-value: 0.16 S-EEEEEET.TCB-STSSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 29 epsvsWakd.gselkssqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 +p v+W+ + +++l++ + v++ +e+ + I + v+ + kY c +t T248998_2 1441 TPIVTWLDRtERDLSNHSIVEILEEQmngFYRVFSILKYPVKLNEKYLCHIT 1492 589******9******999999999876556678888888888888888776 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.0 0.00069 2.8 8 35 .. 1286 1315 .. 1279 1329 .. 0.87 2 ! 7.1 0.0 0.0013 5.5 37 84 .. 1352 1407 .. 1337 1410 .. 0.75 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00069 EETTS-EEEEEEEE..SSCCTSEEEEEESS CS ig 8 vleGesatLtCsvs..tqtkptdvtWkkeg 35 +++ + +tL+C+ s +t++++++W++e+ T248998_2 1286 AHPFTDVTLSCHFSfvKGTENLEFSWERED 1315 5566789********************997 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0013 SSSEEEE........EEEEETTCEEEEEEEESSSTGGG-EEEEEEEEETTEEEEEE CS ig 37 tkiesqk........vvkegnrrkgssslliskvteedaGtYtCevnnsgssvtls 84 t++++++ +v + + +g+ sll+++v d+ Y C + ++++ +++ T248998_2 1352 TEQLEDQnslyegrvSVDQAEISEGTLSLLLRNVDFMDEAIYKCSAITPDGRGEST 1407 444444455666655666667778999*******************9999987766 PP >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.00016 0.67 13 77 .. 1286 1397 .. 1275 1398 .. 0.79 2 ? -2.4 0.0 1.7 6.9e+03 31 76 .. 1442 1490 .. 1441 1492 .. 0.66 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00016 EETTS-EEE----..EEES--.EEEEEE..-.......TTSS-EE............................................SSEEEETTE CS Ig_3 13 vtegesvtLtCea..egnppp.titWykngkk....lssnstsss............................................issegssss 59 +++ +vtL+C+ + ++ +++W +++ k + ++ + + ++++ s T248998_2 1286 AHPFTDVTLSCHFsfVKGTENlEFSWEREDIKqayeV---EDN-KeyyllfkyldffevfsklvyqfhnnteqledqnslyegrvsvdqAEISEGTLS 1379 5666789999988775555556999999999764321...223.147789999999999999999999999999999999999999988888889999 PP EEESS--GGG-EEEEEEE CS Ig_3 60 LtisnvtksdsGtYtCvA 77 L ++nv+ d+ Y+C+A T248998_2 1380 LLLRNVDFMDEAIYKCSA 1397 ****************98 PP == domain 2 score: -2.4 bits; conditional E-value: 1.7 -EEEEEE..-...TTSS-EE...SSEEEETTEEEESS--GGG-EEEEEE CS Ig_3 31 ptitWykngkklssnstsss...issegssssLtisnvtksdsGtYtCv 76 p +tW+ ++ sn++ + ++ +g + ++i + + + +Y C T248998_2 1442 PIVTWLDRTERDLSNHSIVEileEQMNGFYRVFSILKYPVKLNEKYLCH 1490 7799999999855554444477767777777777777666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.71 # Mc/sec: 6559.76 // Query: T248998_3 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.7 0.8 0.023 14.7 0.8 2.1 2 YesK YesK-like protein Domain annotation for each model (and alignments): >> YesK YesK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.8 1.4e-06 0.023 23 68 .. 164 209 .. 155 211 .. 0.86 2 ? -2.9 0.3 0.44 7.1e+03 21 45 .. 506 530 .. 504 535 .. 0.74 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.4e-06 YesK 23 fpkkkygiilll.llillslvavlysllvvGGweGmglgilgvsvli 68 ++++ ++l++ +li+l++ v +++ v GG eG g g gv+v + T248998_3 164 GQPRLHLLALFS*CLIILCVC-VCVCVCVCGGEEGGGAGCWGVCVCV 209 66777777788889*******.**********************976 PP == domain 2 score: -2.9 bits; conditional E-value: 0.44 YesK 21 krfpkkkygiilllllillslvavl 45 k + kk+ +++ +ill +++v+ T248998_3 506 KNNLSKKALQVFTCKSILLKVMQVI 530 5666788889999999999999765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.63 # Mc/sec: 7392.75 // Query: T128229_1 [L=1330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.72 # Mc/sec: 5284.59 // Query: T128229_2 [L=1330] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-15 56.6 2.4 5.3e-15 55.7 2.4 1.4 1 GP41 Retroviral envelope protein 3.7e-07 30.0 2.8 7.4e-07 29.0 2.8 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.16 10.1 2.4 0.12 10.4 0.2 1.7 2 Fusion_gly Fusion glycoprotein F0 Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.7 2.4 9.7e-19 5.3e-15 2 173 .. 584 751 .. 583 779 .. 0.87 Alignments for each domain: == domain 1 score: 55.7 bits; conditional E-value: 9.7e-19 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX..XX...HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynasesW.ervkkhlegiWnnt 100 a v+l ++q+a +v++ +kn k + Q +i +kl +++n l + v+ +G+ ++sl+++++ +C n C T+ yna e e ++ hl+g ++ T128229_2 584 AGVALHSSIQTAGFVDSWQKNSSKLWNSQSQIGQKLANQINDLCQTVIWMGDWIMSLEHRIQKQCDWNTSDFCFTPSSYNAIEHQ*ETIRRHLQG--KKD 681 5689******************************************************************************999999******9..677 PP HHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 101 evsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 ++ ld++kl++++ ++++++ l+ +d l + l n + l+W++ i + ia + + v l +l l+ T128229_2 682 NLTLDIAKLKKQVFEASQAHLTLLPGADILAGASDGLSNTNP-LKWIETI--GGSTIANFILVCVCLCCLFLV 751 899******************************988776655.59*9964..334444444444555555444 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 2.8 1.4e-10 7.4e-07 3 67 .. 126 190 .. 124 192 .. 0.85 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 1.4e-10 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivs 67 ap h+m +m s eqm t++a p tw q+k l+ +a l t +++a ++++s T128229_2 126 APPVHQMAQMNISVEQMETSKTRQATPLTWGQVKSLAHIAEENLRSLNKLLTTSNLMVAMMVVIS 190 7999****************************************988777666555555555555 PP >> Fusion_gly Fusion glycoprotein F0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.1 0.099 5.4e+02 455 479 .. 165 189 .. 139 191 .. 0.86 2 ? 10.4 0.2 2.3e-05 0.12 82 125 .. 557 601 .. 542 647 .. 0.76 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.099 HHHHHTCCCHHHHHTTXXXXXXXXX CS Fusion_gly 455 snkiLdsvnkkllstaivivlivlv 479 +++ L+s nk l++++ +++++v++ T128229_2 165 AEENLRSLNKLLTTSNLMVAMMVVI 189 6788***************999985 PP == domain 2 score: 10.4 bits; conditional E-value: 2.3e-05 SSSSXCCCXXEEEHHHHXEE.EHHHHHHHHHHHHHHHHHHHHHCC CS Fusion_gly 82 skrkkrflGvvlgaiAlgvA.taAqitAgiAlakalknaeeiakl 125 +r krf+ ++++i +A ta + +Ag+Al+ +++ a+ +++ T128229_2 557 LNRSKRFIFTLIAVIMGLIAvTATAAAAGVALHSSIQTAGFVDSW 601 568889987777765433442677789***********9988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1330 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 302 (0.0185208); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 5595.45 // Query: T128229_3 [L=1329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-45 153.7 0.4 5.7e-45 153.0 0.4 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 153.0 0.4 3.5e-49 5.7e-45 12 166 .. 224 382 .. 219 384 .. 0.91 Alignments for each domain: == domain 1 score: 153.0 bits; conditional E-value: 3.5e-49 HERV-K_env_2 12 yvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvnylqd...fsyqrs 103 +vnds+w+pgpid+r p++peeegm++n+sigy++p iclg a gcl q w+ vp s+ h +sg +++ ++yl+ +++++ T128229_3 224 HVNDSIWMPGPIDNRGPTHPEEEGMLMNVSIGYHFPSICLGPAAGCLNYDKQSWMTCVPAN-NGSKAPIHAISGRTFQSldTIKYLEHgyvMTHRQI 319 79*********************************************************86.5689999*****98875337899975332456667 PP HERV-K_env_2 104 lkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtq 166 k++p+ kpcp++ k s + evl we+c+ans+ +lq n +g +idwap g+f nc+gq + T128229_3 320 NKYKPNKKPCPRKATKWSGKLEVLTWEDCIANSTAVLQSNSYGIVIDWAPMGRFAVNCTGQCE 382 79**********************************************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 5940.69 // Query: T153601_1 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.64 # Mc/sec: 1689.68 // Query: T153601_2 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1593 (0.0976941); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.39s 00:00:01.69 Elapsed: 00:00:00.73 # Mc/sec: 1481.36 // Query: T153601_3 [L=377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2513 (0.154115); expected 326.1 (0.02) Passed bias filter: 320 (0.0196247); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.30s 00:00:01.49 Elapsed: 00:00:00.68 # Mc/sec: 1586.08 // Query: T128945_1 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 465 (0.0285171); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 2271.15 // Query: T128945_2 [L=388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 566 (0.0347111); expected 326.1 (0.02) Passed bias filter: 266 (0.016313); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2265.31 // Query: T128945_3 [L=388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2265.31 // Query: T367797_1 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 8645.43 // Query: T367797_2 [L=1510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 8307.41 // Query: T367797_3 [L=1510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 8470.30 // Query: T258988_1 [L=2929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.54 # Mc/sec: 15517.35 // Query: T258988_2 [L=2929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.6 6.6 6.6 11 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00064 11 6 41 .. 1988 2023 .. 1974 2034 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00064 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258988_2 1988 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2023 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 14700.65 // Query: T258988_3 [L=2928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 15512.06 // Query: T048481_1 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 1770.14 // Query: T048481_2 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44 # Mc/sec: 1931.06 // Query: T048481_3 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46 # Mc/sec: 1847.10 // Query: T016660_1 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 9394.03 // Query: T016660_2 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 533 (0.0326874); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 8679.65 // Query: T016660_3 [L=1608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1608 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 8846.57 // Query: T337532_1 [L=4228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.57 # Mc/sec: 20854.46 // Query: T337532_2 [L=4228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.26s 00:00:01.40 Elapsed: 00:00:00.55 # Mc/sec: 21991.98 // Query: T337532_3 [L=4228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.27s 00:00:01.37 Elapsed: 00:00:00.51 # Mc/sec: 23716.84 // Query: T123320_1 [L=3955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.28s 00:00:01.31 Elapsed: 00:00:00.54 # Mc/sec: 20952.93 // Query: T123320_2 [L=3955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.54 # Mc/sec: 20952.93 // Query: T123320_3 [L=3955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.55 # Mc/sec: 20571.97 // Query: T305688_1 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 648 (0.03974); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.53 # Mc/sec: 8118.28 // Query: T305688_2 [L=1503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 13.8 8.1 0.039 13.2 8.1 1.1 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 8.1 2.4e-06 0.039 196 325 .. 592 792 .. 584 795 .. 0.45 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 2.4e-06 Plasmodium_Vir 196 npkkllsklsCknk................................................................................. 209 n+k+ l+klsC+ + T305688_2 592 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfsss 686 66677777777766677777777777777777777777777777777777777777777777777777777777777777766555555544322 PP Plasmodium_Vir 210 ...spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvseelss 300 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ +ss T305688_2 687 sssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSSSSSS 768 2211.....111111111111111111111111111111........111111112111112222222222222222222222222222222222 PP Plasmodium_Vir 301 nfirniimaaailgtgiflfsylly 325 + + + a+++ + ++ fsy+ly T305688_2 769 SSSPSPS-SASASAASFSSFSYFLY 792 2222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1189 (0.0729179); expected 326.1 (0.02) Passed bias filter: 440 (0.0269839); expected 326.1 (0.02) Passed Vit filter: 269 (0.016497); expected 16.3 (0.001) Passed Fwd filter: 75 (0.00459953); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.87u 0.36s 00:00:02.23 Elapsed: 00:00:00.66 # Mc/sec: 6514.89 // Query: T305688_3 [L=1503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 546 (0.0334846); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 8431.03 // Query: T000166_1 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.24s 00:00:01.10 Elapsed: 00:00:00.49 # Mc/sec: 15553.57 // Query: T000166_2 [L=2664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.52 # Mc/sec: 14656.25 // Query: T000166_3 [L=2663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 14108.13 // Query: T172697_1 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2205 (0.135226); expected 326.1 (0.02) Passed bias filter: 484 (0.0296823); expected 326.1 (0.02) Passed Vit filter: 231 (0.0141666); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.30s 00:00:01.76 Elapsed: 00:00:00.57 # Mc/sec: 5070.57 // Query: T172697_2 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2014 (0.123513); expected 326.1 (0.02) Passed bias filter: 480 (0.029437); expected 326.1 (0.02) Passed Vit filter: 191 (0.0117135); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.38s 00:00:01.87 Elapsed: 00:00:00.73 # Mc/sec: 4028.68 // Query: T172697_3 [L=1028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2201 (0.134981); expected 326.1 (0.02) Passed bias filter: 613 (0.0375935); expected 326.1 (0.02) Passed Vit filter: 289 (0.0177235); expected 16.3 (0.001) Passed Fwd filter: 74 (0.00453821); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.45s 00:00:02.56 Elapsed: 00:00:00.77 # Mc/sec: 3819.39 // Query: T266288_1 [L=4273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-20 71.1 0.2 1.4e-19 70.4 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.4 0.2 8.7e-24 1.4e-19 54 193 .. 1686 1835 .. 1677 1858 .. 0.91 Alignments for each domain: == domain 1 score: 70.4 bits; conditional E-value: 8.7e-24 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS RVT_1 54 aveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnell 151 ++++++ ++k+++ +++++++D +kaF +++ ++ l++l++++++ + + +i++++ +++ ++ +ng++ e ++ k+g++q ++lS llfn++++ T266288_1 1686 QINKCNPSIKQTNDKNHMITIDAEKAFKRIQQHFMLKTLNKLGIDGMYLIIIRTIYDKPTDNIILNGQKLEAFPLKTGTRQECPLSSLLFNIVLEVPA 1783 458888999999********************************************************99**************************99 PP TT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 152 relrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 r + ++ ++ tl+++aDD++++ ++ ++q++ + ++++ k+ T266288_1 1784 RAIWQEKaikgiqlgkEEATLSLFADDMIVYLENpIVSAQNHHKLISNFSKS 1835 99988878**************************666699999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 634 (0.0388814); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.76 # Mc/sec: 16084.64 // Query: T266288_2 [L=4273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.67 # Mc/sec: 18245.26 // Query: T266288_3 [L=4272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-95 317.8 20.5 3.4e-92 309.0 10.8 2.2 2 Transposase_22 L1 transposable element 5e-06 25.9 2.1 1.2e-05 24.6 2.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.43 10.4 1.9 0.85 9.5 0.3 2.2 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 2.1 2.6e-06 0.014 35 121 .. 778 856 .. 773 860 .. 0.78 2 ! 309.0 10.8 6.3e-96 3.4e-92 146 368 .] 863 1087 .. 862 1087 .. 0.97 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 2.6e-06 .XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 35 eeldpdlkdflelriedik...kdfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 e++++++d ++l + +++ k +++elke + ++ ke + +k ++e + v + k+l+elkt +el +++ T266288_3 778 MEQSWMKNDIDQLTEIGFRr*vKTNFSELKEHVLTHLKEAKsLEKRLDEWLTRINS------------VEKNLKDLMELKTMERELCNTCT 856 49****************95555*****************9888999985544333............22234678888888888877775 PP == domain 2 score: 309.0 bits; conditional E-value: 6.3e-96 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE.EE CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei.yr 236 +++eer+s +ed+++ei++e k ekr+k+ eq lq+ d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iq i + T266288_3 863 NQVEERISVIEDQMNEINQEDKCGEKRVKRTEQGLQE-I*DYVKRPNLCLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQKI*K- 953 699*********************************8.6779**********************************************8666. PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH..HHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre..wtdviqilkekkfqPrllyPaklsiiidGe 327 tP+r++ +ra++rhii+r tkv++k+k+l+a+rek +vt kGkPirltadl aetl+a re t ++ilkek+fqPr++y akls+i++Ge T266288_3 954 TPQRYSLRRATPRHIIIRCTKVEMKEKMLRAAREKDQVTHKGKPIRLTADLLAETLQAGRE*gLT--FNILKEKNFQPRISYTAKLSFISEGE 1044 9***********************************************************88565..9************************* PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f d ++lrd+++trPal++llke ++er++ryq+l++++ T266288_3 1045 IKSFTDNKMLRDFVTTRPALQELLKEvlNMERNNRYQPLQKHA 1087 ****************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 2.1 2.2e-09 1.2e-05 4 19 .] 2346 2361 .. 2346 2361 .. 0.98 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 2.2e-09 DUF1725 4 gKWMELEnIILSEisQ 19 g+WM+LE+IILS+isQ T266288_3 2346 GTWMKLETIILSKISQ 2361 9**************9 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.3 0.00016 0.85 25 48 .. 820 843 .. 815 845 .. 0.91 2 ? -1.5 0.1 0.4 2.2e+03 27 42 .. 1420 1435 .. 1419 1439 .. 0.78 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00016 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D+ +ri++ Ek+++dlm+ T266288_3 820 LEKRLDEWLTRINSVEKNLKDLME 843 568********************7 PP == domain 2 score: -1.5 bits; conditional E-value: 0.4 HSBP1 27 sriDdMssriDdLEks 42 s+iD ++s + +LEk+ T266288_3 1420 SKIDTLTSQLKELEKQ 1435 6888888888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 621 (0.0380841); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.56u 0.34s 00:00:01.90 Elapsed: 00:00:00.76 # Mc/sec: 16080.88 // Query: T191680_1 [L=1050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 5179.09 // Query: T191680_2 [L=1050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 5461.58 // Query: T191680_3 [L=1049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.55 # Mc/sec: 5456.38 // Query: T212592_1 [L=4122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 432 (0.0264933); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.38s 00:00:02.00 Elapsed: 00:00:00.82 # Mc/sec: 14380.90 // Query: T212592_2 [L=4121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.69 # Mc/sec: 17086.20 // Query: T212592_3 [L=4121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.41s 00:00:02.02 Elapsed: 00:00:00.75 # Mc/sec: 15719.31 // Query: T320485_1 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.73 # Mc/sec: 5435.58 // Query: T320485_2 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6298.37 // Query: T320485_3 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 5918.08 // Query: T099920_1 [L=3799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.70 # Mc/sec: 15526.13 // Query: T099920_2 [L=3799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.78 # Mc/sec: 13933.71 // Query: T099920_3 [L=3798] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3798 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.70 # Mc/sec: 15522.05 // Query: T222024_1 [L=1969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.67 # Mc/sec: 8407.42 // Query: T222024_2 [L=1969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 8666.11 // Query: T222024_3 [L=1969] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1969 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 9085.44 // Query: T366630_1 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.36s 00:00:01.83 Elapsed: 00:00:00.71 # Mc/sec: 19232.03 // Query: T366630_2 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.29s 00:00:01.88 Elapsed: 00:00:00.74 # Mc/sec: 18452.35 // Query: T366630_3 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.41s 00:00:02.17 Elapsed: 00:00:00.87 # Mc/sec: 15695.11 // Query: T123317_1 [L=5166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.37s 00:00:02.06 Elapsed: 00:00:00.80 # Mc/sec: 18473.81 // Query: T123317_2 [L=5166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.37s 00:00:02.02 Elapsed: 00:00:00.87 # Mc/sec: 16987.41 // Query: T123317_3 [L=5165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.33s 00:00:01.94 Elapsed: 00:00:00.85 # Mc/sec: 17383.75 // Query: T129735_1 [L=5035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5035 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.40s 00:00:02.04 Elapsed: 00:00:00.76 # Mc/sec: 18953.00 // Query: T129735_2 [L=5034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:00.72 # Mc/sec: 20001.97 // Query: T129735_3 [L=5034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.38s 00:00:02.04 Elapsed: 00:00:00.85 # Mc/sec: 16942.84 // Query: T016535_1 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-05 23.9 0.1 2.3e-05 23.9 0.1 1.7 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 2.2 8.8 9.7 18 5.9 2.2 3.3 3 GTP-bdg_M GTP-binding GTPase Middle Region Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.2 0.4 3.3e+03 180 204 .. 379 403 .. 368 455 .. 0.69 2 ! 23.9 0.1 2.8e-09 2.3e-05 1 49 [. 612 665 .. 612 673 .. 0.87 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.4 HHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 180 lqelleaveewlkesglkinpeKtk 204 q+l++++++ ++ + +n++K k T016535_1 379 YQNLWDTFKAVCRGKFIALNAHKRK 403 6677777777777777777777654 PP == domain 2 score: 23.9 bits; conditional E-value: 2.8e-09 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH. CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgr 49 ipK+g ++++Rpisl+++d k+lnk++a + ++++kl++++q+gf pg T016535_1 612 IPKPGrdttkKENFRPISLMNIDAKILNKILAn*iQ---QHIKKLIHHDQVGFIPGC 665 899999999999******************964434...688888**********94 PP >> GTP-bdg_M GTP-binding GTPase Middle Region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.9 0.0037 31 54 77 .. 405 428 .. 397 430 .. 0.86 2 ? 5.9 2.2 0.0022 18 55 76 .. 432 453 .. 428 456 .. 0.90 3 ? -1.1 0.0 0.33 2.7e+03 18 36 .. 531 550 .. 530 571 .. 0.76 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0037 HHHHHHHHHHHHHHHHHHHH.... CS GTP-bdg_M 54 ireriaklkkeLekvkkqrelqrk 77 r +i++l ++L++++kq++++ k T016535_1 405 ERSKIDTLTSQLKELEKQEQTHSK 428 5889****************9976 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0022 HHHHHHHHHHHHHHHHHHH... CS GTP-bdg_M 55 reriaklkkeLekvkkqrelqr 76 r+ i+k++ eL++++k+++lq+ T016535_1 432 RQEITKIRAELKEIEKHKTLQK 453 688***************9986 PP == domain 3 score: -1.1 bits; conditional E-value: 0.33 HHHHHH.CXXXXXXXXX..X CS GTP-bdg_M 18 yllprL.eglgkelsrqgGg 36 y lprL ++ ++l+r g T016535_1 531 YTLPRLnQEEVESLNRPITG 550 99****66888888887444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1290 (0.079112); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 3184.78 // Query: T016535_2 [L=757] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-08 34.4 0.0 2.7e-08 33.9 0.0 1.2 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 5.1e-06 26.2 0.5 5.1e-06 26.2 0.5 1.7 2 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.9 0.0 3.4e-12 2.7e-08 2 113 .] 107 325 .. 106 325 .. 0.75 Alignments for each domain: == domain 1 score: 33.9 bits; conditional E-value: 3.4e-12 EEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE.................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF Exo_endo_phos 2 twNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl.................. 77 t Nvn+ ++ + ++ +la+++k++++ v g+qE + ++ +l+ + ++ + ++++ gva+l++ + + + T016535_2 107 TLNVNR----LNAPIKRHRLANWIKSQNPSVCGVQESHLMCRDTHRLKTkgWRKIYQANGKQKKAGVAILVSDKTDFKptkikrdkeghyirvkgs 198 899999....7778899*******************7766655555555776677788899999***********7777889************** PP ....................................EEEEEE-SS.......................................-B.......... CS ....................................xxxxxxxxx.......................................xx.......... RF Exo_endo_phos 78 ....................................vivlGDfNa.......................................rl.......... 88 i++GDfN+ + T016535_2 199 iqqeertilniyapntgaprfikqvlrdlqrdldshTIIMGDFNTplstldrstr*kvnkdiqelnsalhqvdlidiyrtlhpkSMeytffsaphr 294 *********************************************888777777776666666666666666555555555555114444444444 PP .....EEEEEEHHHHTTEEEEEEECCH.......SSB CS .....xxxxxxxxxxxxxxxxxxxxxx.......xxx RF Exo_endo_phos 89 .....Drilaskelatersgvldepla.......SDH 113 D+i+ sk+l + + SDH T016535_2 295 tysktDHIVGSKALLSKCKR------TeiitnclSDH 325 44444777777643333333......13333447888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.5 6.2e-10 5.1e-06 2 118 .. 205 328 .. 204 329 .. 0.82 2 ? -3.4 0.1 0.95 7.7e+03 47 75 .. 642 670 .. 638 678 .. 0.65 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 6.2e-10 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds...kergeeLidfleehslsll....nllkegptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + ++ ++ +eL + l++ +l + + + + tf s + T016535_2 205 TILNIYAPNTG-APRFIKQVLRDLQRDLDS-HTIIMGDFNTPLSTLDR--STR*kvNKDIQELNSALHQVDLIDIyrtlHPKSMEYTFFSAPHr 294 58899**9999.888888888888888887.8**************99..6669899*************998656663333344777655545 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s D ++ s+ l+ + ++ ++++SDH++i T016535_2 295 tYSKTDHIVGSKALLSKckRTEIITNCLSDHSAI 328 5899*************98666779******998 PP == domain 2 score: -3.4 bits; conditional E-value: 0.95 Exo_endo_phos_2 47 WgsedtdskergeeLidfleehslsllnl 75 W+ e++++++ + +i++ +++ +l+++ T016535_2 642 WQTESSSTSKSLSTMIKWASSLDARLVQH 670 66655555666777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (757 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 3281.29 // Query: T016535_3 [L=756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-13 49.3 0.0 5.6e-13 48.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.8 0.0 3.4e-17 5.6e-13 53 137 .. 672 756 .] 658 756 .] 0.92 Alignments for each domain: == domain 1 score: 48.8 bits; conditional E-value: 3.4e-17 .........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-T CS RVT_1 53 daveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsv 137 +++++++++ + + k+++++++D +kaFd+++ ++ l++l++++++ + +++i+++++++++++ +ng++ + + k+g++qG++ T016535_3 672 KSINVIQHIKRTNDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKTIRAVYEKPTANIILNGQKLGAFLLKTGTRQGCP 756 33477888888999*******************************************************99************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.63 # Mc/sec: 3433.00 // Query: T111329_1 [L=855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.23 11.0 0.0 0.36 10.4 0.0 1.2 1 DUF1564 Protein of unknown function (DUF1564) Domain annotation for each model (and alignments): >> DUF1564 Protein of unknown function (DUF1564) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 2.2e-05 0.36 75 110 .. 408 443 .. 403 450 .. 0.91 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 2.2e-05 DUF1564 75 qekngklkklsvrvntkdWallgvlaaahgvSrCyL 110 q ++g+l k s+r ++++Wa l + + g+SrC T111329_1 408 QLEKGQLDKCSLRDKQDEWAFLHYRTLTPGISRCVY 443 56789*****************************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 3763.09 // Query: T111329_2 [L=855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 4796.10 // Query: T111329_3 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 3878.01 // Query: T046441_1 [L=5259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-67 228.3 15.0 6.4e-62 209.4 2.4 2.6 2 Transposase_22 L1 transposable element 0.0088 16.2 0.0 0.018 15.2 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 5.0 2.3e-09 1.8e-05 2 74 .. 3409 3480 .. 3407 3482 .. 0.85 2 ! 209.4 2.4 7.9e-66 6.4e-62 220 361 .. 3595 3735 .. 3592 3744 .. 0.90 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 2.3e-09 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX.XX CS Transposase_22 2 GkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd....fykelkelieskakele.al 74 G+ + rk +nsk +++s+ k++sssP+ e+++ ++df++l +++++ + +elke +++++ke + + T046441_1 3409 GRNQ---SRKAENSKNQSTSS-LKDHSSSPEM--EQSWTENDFDKLTDVGFRRSeimkNLSELKEHVQTHCKEAKnLE 3480 5555...8*********9997.6889999**9..*******************754446899**********987444 PP == domain 2 score: 209.4 bits; conditional E-value: 7.9e-66 -HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH...HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT CS Transposase_22 220 fPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl...nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekk 309 +Pnl+++ n++iqei+rtP+r++ +ra +rh ++ nk+k+l+a+ ekG+vt kGkPirltadlsa tl+arrew++++++lkek+ T046441_1 3595 LPNLARQTNIQIQEIQRTPQRYSLRRANPRHNC----QIHqg*NKEKMLRAAGEKGQVTHKGKPIRLTADLSAKTLQARREWGPIVNVLKEKN 3683 7******************************64....3333488************************************************* PP ---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 310 fqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 fqPr +yPakl++i++Geik f dk++lrd+++trPal++llke +++r+ + T046441_1 3684 FQPRTSYPAKLTFISEGEIKSFTDKQMLRDFVTTRPALQELLKEtiNMKRN--N 3735 ********************************************5555544..4 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 2.2e-06 0.018 1 41 [. 3778 3814 .. 3778 3859 .. 0.77 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2.2e-06 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvddd 41 lt+Nvng ++ + ++++la+++k++d+ v ++qE++ T046441_1 3778 LTFNVNG----LNAPIKRQRLANWIKSQDPSVCCIQETHLT 3814 79*****....7778999*******************6544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 564 (0.0345885); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.85u 0.44s 00:00:02.29 Elapsed: 00:00:00.83 # Mc/sec: 18126.63 // Query: T046441_2 [L=5259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-21 76.0 0.0 4.3e-21 75.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 0.0 2.6e-25 4.3e-21 124 222 .] 4417 4541 .. 4405 4541 .. 0.90 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 2.6e-25 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE..... CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf... 208 e ++ k+g++qG++lSPllfn++++ l r +rk+ ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ T046441_2 4417 EAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRKEKeikgiqlgkEEVKLSLFADDMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYgnn 4514 67999****************************99***************************6677***************************99999 PP ................ESSEEETTEEE CS RVT_1 209 ........sg.....kseevkyLGvtl 222 s+ ++++kyLG++l T046441_2 4515 rqtesqiiSKlpftiATKRIKYLGIQL 4541 988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 435 (0.0266773); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.91u 0.39s 00:00:02.29 Elapsed: 00:00:00.95 # Mc/sec: 15836.95 // Query: T046441_3 [L=5258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-77 258.4 25.4 2.9e-73 246.7 17.2 3.2 2 Transposase_22 L1 transposable element 8.2e-18 64.6 1.6 8.2e-18 64.6 1.6 1.6 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 1.3e-13 50.0 1.5 1.2e-05 24.7 0.2 2.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 246.7 17.2 5.3e-77 2.9e-73 106 333 .. 1495 1704 .. 1405 1707 .. 0.81 2 ! 12.2 1.1 9.8e-06 0.053 119 163 .. 3495 3538 .. 3481 3555 .. 0.83 Alignments for each domain: == domain 1 score: 246.7 bits; conditional E-value: 5.3e-77 XXXXXXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES CS Transposase_22 106 llelktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliG 196 l+elk k++el++ + s+ + id++ee++s +ed + e+ ++ k rekr+k++eq+lq+ d+vkr nl+liG T046441_3 1495 LMELKNKAQELHNAKT------------------SI-NS*IDQMEEKISELEDYLAELRQTDKIREKRMKRNEQNLQE-L*DYVKRLNLQLIG 1567 5555555555544444..................33.4568************************************8.788*********** PP ----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---H CS Transposase_22 197 vdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsa 289 v+ + +++kl+n+l++ii+en+Pnl +e+n++iqei+ t r++ +r+++rhii+r++k+++k+k+l a+rekG+vt+kGkPirl +sa T046441_3 1568 VPKRDGANGTKLKNTLQDIIQENLPNLSREVNIQIQEIQGTTVRYSMRRSAPRHIIIRLSKIEMKEKMLSAAREKGQVTYKGKPIRLIVGISA 1660 ********************************************************************************************* PP HHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESS CS Transposase_22 290 etlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfid 333 etl+arrew +ilkek+fqPr++yP kls+i++Geik d T046441_3 1661 ETLQARREWQLKCNILKEKNFQPRISYPVKLSFISKGEIKSSSD 1704 ****************************************8777 PP == domain 2 score: 12.2 bits; conditional E-value: 9.8e-06 XXX..................XXHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 119 eqseatleietlgkrsgtidaslssrideleervsaaedeieeid 163 + + +e++t+++ + +s++s+ +++eervs +ed+i+ei+ T046441_3 3495 TLN-DLIEMKTMAQELHDVCTSFNSQFHQVEERVSVIEDQINEIK 3538 333.568999*********************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.97 5.3e+03 104 144 .. 2733 2773 .. 2730 2774 .. 0.87 2 ! 64.6 1.6 1.5e-21 8.2e-18 1 104 [. 4285 4397 .. 4285 4414 .. 0.95 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.97 ....................TEEEEESB--ST-TTHHHHHH CS RVT_1 104 liksflstrsfsvrvngeesegryekkglpqGsvlSPllfn 144 l+++ l+++++ +v+++ ++ +++k l+ G+++S +++ T046441_3 2733 LVNNNLRKTECICQVKWKYKQVKKYKYKLKVGIIISHSIWK 2773 678889999999******7799999999*******999886 PP == domain 2 score: 64.6 bits; conditional E-value: 1.5e-21 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK g ++++Rpisl+++d+k+l+k++a++++++++kl++++q+ f pg++ + ++ ++++++++ + k+++++++D +kaFd+ + ++ l T046441_3 4285 IPKAGrdttkKEKFRPISLMNIDVKILSKILANQIQQHIKKLIHQDQVSFIPGKQGWLNIcksiNVIHHINRTNDKNHMIISIDAEKAFDKTQQRFML 4382 788888888889***************************************************9999***999************************* PP GGGG-EEET...... CS RVT_1 90 rkltafkvptklinl 104 +l++++++++ +++ T046441_3 4383 TTLNKLGIDETYLKI 4397 ********9886555 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.1 4.9e-09 2.7e-05 1 19 [] 2528 2546 .. 2528 2546 .. 0.96 2 ! 24.7 0.2 2.2e-09 1.2e-05 1 19 [] 5003 5021 .. 5003 5021 .. 0.98 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 4.9e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag++M+LE IILS +Q T046441_3 2528 SFAGTCMKLEAIILSTLTQ 2546 7**************9998 PP == domain 2 score: 24.7 bits; conditional E-value: 2.2e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+W +LE+IILS+ sQ T046441_3 5003 SFAGTWVKLETIILSKLSQ 5021 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5258 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.77u 0.40s 00:00:02.17 Elapsed: 00:00:00.82 # Mc/sec: 18344.20 // Query: T229454_1 [L=2529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.75 # Mc/sec: 9646.72 // Query: T229454_2 [L=2528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.68 # Mc/sec: 10635.56 // Query: T229454_3 [L=2528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.5 7.2 3 7.5 7.2 1.5 1 Yae1_N Essential protein Yae1, N terminal Domain annotation for each model (and alignments): >> Yae1_N Essential protein Yae1, N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 7.2 0.00019 3 1 25 [. 1828 1852 .. 1828 1854 .. 0.90 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00019 Yae1_N 1 GYreGlaeGkeqglqeGfdeGyqeG 25 G +eG + G+e+g eG+ eG++eG T229454_3 1828 GRKEGREGGREEGRKEGRKEGRKEG 1852 7799999999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2528 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.71 # Mc/sec: 10186.17 // Query: T316352_1 [L=4647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.38s 00:00:01.99 Elapsed: 00:00:00.74 # Mc/sec: 17965.24 // Query: T316352_2 [L=4647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.46s 00:00:02.08 Elapsed: 00:00:00.73 # Mc/sec: 18211.34 // Query: T316352_3 [L=4646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.38s 00:00:01.84 Elapsed: 00:00:00.70 # Mc/sec: 18987.74 // Query: T006445_1 [L=1977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1977 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 8079.80 // Query: T006445_2 [L=1976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 8565.15 // Query: T006445_3 [L=1976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.78 # Mc/sec: 7247.44 // Query: T177042_1 [L=2429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.62 # Mc/sec: 11207.99 // Query: T177042_2 [L=2428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.96 # Mc/sec: 7235.52 // Query: T177042_3 [L=2428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.29s 00:00:01.38 Elapsed: 00:00:00.77 # Mc/sec: 9020.90 // Query: T349586_1 [L=1505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-17 62.8 1.5 5e-17 62.0 1.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 6.5e-08 31.9 0.6 1.3e-07 30.9 0.6 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.0 1.5 6.2e-21 5e-17 1 122 [. 555 685 .. 555 689 .. 0.92 Alignments for each domain: == domain 1 score: 62.0 bits; conditional E-value: 6.2e-21 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleel 88 ipK++ ++++Rpisl++++ k+lnk++a + +++kl++++q+gf +g + + + ++++++++ k k+ +++++D +kaFd+++ ++ T349586_1 555 IPKPDrdttkKENFRPISLMNINAKILNKILAn*fQ---HHIKKLIHHDQVGFIHGMQGWFHIrksiNVIQHINRTKDKSPMIISIDAEKAFDKIQQPFM 651 899999999999******************986643...566777***********9999999*9999999999999999******************** PP GGGGG-EEET........................ CS RVT_1 89 lrkltafkvptklinliksflstrsfsvrvngee 122 l++l++++++ + ++++++++ ++++++ +ng++ T349586_1 652 LKTLNKLGIDGMYLKIVRAIYDKPTANIILNGQT 685 ******************************9986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.6 1.6e-11 1.3e-07 2 19 .] 1279 1296 .. 1279 1296 .. 0.99 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 1.6e-11 DUF1725 2 FagKWMELEnIILSEisQ 19 F+g+WM+LE+IILS+ sQ T349586_1 1279 FVGTWMKLETIILSKLSQ 1296 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 7553.60 // Query: T349586_2 [L=1505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 6064.15 // Query: T349586_3 [L=1505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-22 78.5 0.1 8.4e-22 77.6 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 7.1e-08 32.2 1.1 1.8e-07 30.9 1.1 1.8 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 6.3e-06 26.3 0.0 1.4e-05 25.2 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.6 0.1 1.5e-25 8.4e-22 116 222 .] 678 810 .. 673 810 .. 0.90 Alignments for each domain: == domain 1 score: 77.6 bits; conditional E-value: 1.5e-25 ........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EE CS RVT_1 116 vrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtkl 205 ++ ++ + e ++ k+g++qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ +++ +q+ll+ ++++ k sg+kin +K+++ T349586_3 678 YHTEWANLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIKQEKeikgirlgkEEVKLSLFADDMIVYLENPIVlAQNLLKLISNFSKVSGYKINVQKSQA 777 566888889********************************99***************************77669************************* PP E.....................ESSEEETTEEE CS RVT_1 206 vlf...........sg.....kseevkyLGvtl 222 +l+ s+ s+++kyLG++l T349586_3 778 LLYtnnrqtqsqivSAlpitiASKRIKYLGIQL 810 *99999888877661156668*********986 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 1.1 3.3e-11 1.8e-07 2 118 .. 148 271 .. 147 272 .. 0.81 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 3.3e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..s 88 +i s+Y p + + + +++ l++ ++l+s ++ii+GDfN + + ++ ++ ++ +eL + l++ +l + ++k++ tf s + T349586_3 148 TILSIYAPITG-APRFIKQVLRDQQRDLDS-HTIIMGDFNTPLSTLDRSTGQKvNKDIQELNSALHQADLIDIyrtLHPKSTeYTFFSATHhtY 239 68889998888.666666666666666665.9**************997766699**************9966776444555588888777677 PP Exo_endo_phos_2 89 siiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T349586_3 240 SKIDHIVGSKALLSKykRTEIITNCLSDHSAI 271 ****************9777789******998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.0 2.6e-09 1.4e-05 20 113 .] 64 268 .. 63 268 .. 0.83 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 2.6e-09 HHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE.................................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF Exo_endo_phos 20 aladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl.................................... 77 +la+++k++d v ++qE++ ++ +l+ + ++ + ++++ +va+l++ + + + T349586_3 64 RLANWIKSQDQSVCFIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAEVAILVSDKTDFKptkikrdkeghyimvkgsiqqeeltilsiyapitga 159 799***************9998887777666885566677778888889999988886666777888999999999999999************** PP ..................EEEEEE-SS......................................................-BEEEEEEHHHHTTE CS ..................xxxxxxxxx......................................................xxxxxxxxxxxxxxx RF Exo_endo_phos 78 ..................vivlGDfNa......................................................rlDrilaskelater 101 i++GDfN+ +D+i+ sk+l + T349586_3 160 prfikqvlrdqqrdldshTIIMGDFNTplstldrstgqkvnkdiqelnsalhqadlidiyrtlhpksteytffsathhtysKIDHIVGSKALLSKY 255 ***************************999999999999999999999999999999999988888888888888888888889999998555555 PP EEEEEECCH.SSB CS xxxxxxxxx.xxx RF Exo_endo_phos 102 sgvldepla.SDH 113 + + + SDH T349586_3 256 KRTEIITNClSDH 268 5554444447888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 582 (0.0356924); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 6523.56 // Query: T035603_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.62 # Mc/sec: 8960.86 // Query: T035603_2 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 9416.49 // Query: T035603_3 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 8676.36 // Query: T030307_1 [L=395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1852.50 // Query: T030307_2 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 461 (0.0282718); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.65 # Mc/sec: 1734.10 // Query: T030307_3 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.55 # Mc/sec: 2049.39 // Query: T259389_1 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.64 # Mc/sec: 12699.40 // Query: T259389_2 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.71 # Mc/sec: 11447.35 // Query: T259389_3 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.71 # Mc/sec: 11447.35 // Query: T234777_1 [L=2028] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2028 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:00.73 # Mc/sec: 7947.62 // Query: T234777_2 [L=2027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.68 # Mc/sec: 8527.80 // Query: T234777_3 [L=2027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.86 # Mc/sec: 6742.91 // Query: T052050_1 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 839 (0.0514535); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.65 # Mc/sec: 3846.72 // Query: T052050_2 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1128 (0.069177); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 3677.01 // Query: T052050_3 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1155 (0.0708328); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.87 # Mc/sec: 2870.69 // Query: T229053_1 [L=4245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.33s 00:00:01.94 Elapsed: 00:00:00.85 # Mc/sec: 14287.32 // Query: T229053_2 [L=4245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-10 38.7 0.0 9.1e-10 38.2 0.0 1.2 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 0.0 5.6e-14 9.1e-10 112 210 .] 63 197 .. 50 197 .. 0.94 Alignments for each domain: == domain 1 score: 38.2 bits; conditional E-value: 5.6e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke.......................................snseg.evvvvfvlYr 171 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ ++ +g + + +++Y T229053_2 63 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYC 161 89********************.9***********************************************************75645************ PP GAIN 172 nLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229053_2 162 TPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 197 ****9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.61u 0.33s 00:00:01.94 Elapsed: 00:00:00.77 # Mc/sec: 15771.72 // Query: T229053_3 [L=4244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.31s 00:00:01.88 Elapsed: 00:00:00.66 # Mc/sec: 18396.00 // Query: T258963_1 [L=2763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 6.7 6.6 9.9 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00061 9.9 6 41 .. 1822 1857 .. 1808 1868 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00061 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258963_1 1822 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1857 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.61 # Mc/sec: 12958.15 // Query: T258963_2 [L=2762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.65 # Mc/sec: 12156.33 // Query: T258963_3 [L=2762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.54 # Mc/sec: 14632.62 // Query: T232529_1 [L=5072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 411 (0.0252054); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.61 # Mc/sec: 23787.10 // Query: T232529_2 [L=5072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.33s 00:00:01.77 Elapsed: 00:00:00.62 # Mc/sec: 23403.44 // Query: T232529_3 [L=5072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.59 # Mc/sec: 24593.44 // Query: T381534_1 [L=5815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.32s 00:00:01.81 Elapsed: 00:00:00.65 # Mc/sec: 25593.43 // Query: T381534_2 [L=5815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.64 # Mc/sec: 25993.32 // Query: T381534_3 [L=5814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.36s 00:00:02.02 Elapsed: 00:00:00.62 # Mc/sec: 26827.20 // Query: T236382_1 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1223 (0.0750031); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.43s 00:00:01.94 Elapsed: 00:00:00.67 # Mc/sec: 3121.29 // Query: T236382_2 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1228 (0.0753097); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.63 # Mc/sec: 3319.47 // Query: T236382_3 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1057 (0.0648228); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.61 # Mc/sec: 3423.62 // Query: T176629_1 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-05 24.7 21.3 0.00079 20.0 5.5 3.6 3 UPAR_LY6 u-PAR/Ly-6 domain Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.6 9.7e-06 0.16 16 58 .. 146 185 .. 136 207 .. 0.77 2 ? 1.6 1.5 0.026 4.3e+02 4 29 .. 226 251 .. 224 264 .. 0.79 3 ! 20.0 5.5 4.8e-08 0.00079 1 55 [. 268 322 .. 268 353 .. 0.90 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 9.7e-06 EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCCCCC CS UPAR_LY6 16 veCpeadsvCvsatlklqagnlettlvvkgCaresscrlladf 58 ++C+ +++ Cv+ + g+ + kgCa+ + c+l ++ T176629_1 146 MNCTGKQTACVTLHGTWSRGG---PQILKGCATPEVCNLHENA 185 79*************999665...99***********544433 PP == domain 2 score: 1.6 bits; conditional E-value: 0.026 EEEB.TTTBCCCCEEEETTB-EEEEEE CS UPAR_LY6 4 Clge.ssesClpeveCpeadsvCvsat 29 C +sC p Cpe++++C++ T176629_1 226 CFTC*DLHSCGPL-PCPEDNHYCLQMA 251 5555567899999.*********9865 PP == domain 3 score: 20.0 bits; conditional E-value: 4.8e-08 EEEEEEBTTTBCCCC..EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCC CS UPAR_LY6 1 CysClgessesClpe..veCpeadsvCvsatlklqagnlettlvvkgCaresscrll 55 C++C g e C+++ ++Cp ++s Cv+ l+ ++g+ +++ v+gC c+ l T176629_1 268 CPTCPGSYLEPCNSSfyMQCPSGESECVQLDLTSEEGG--RNVNVRGCGSRDLCSAL 322 *************************************9..88999***999999544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 3748.88 // Query: T176629_2 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 3672.37 // Query: T176629_3 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3672.37 // Query: T038091_1 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 10798.23 // Query: T038091_2 [L=1925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-130 435.8 18.9 1e-130 435.8 18.9 1.8 2 Transposase_22 L1 transposable element 1.1e-07 32.0 0.0 2.3e-07 30.9 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.00047 20.2 3.3 0.0023 18.0 3.3 2.2 1 KLRAQ Predicted coiled-coil domain-containing prote ------ inclusion threshold ------ 0.14 11.7 0.3 0.38 10.3 0.3 1.8 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 435.8 18.9 2.5e-134 1e-130 1 367 [. 742 1076 .. 742 1077 .. 0.95 2 ? -4.9 3.3 2.1 8.4e+03 56 118 .. 1384 1453 .. 1363 1464 .. 0.57 Alignments for each domain: == domain 1 score: 435.8 bits; conditional E-value: 2.5e-134 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykel.kelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk + +s+P+ke+sssPat e+++ +df+elr+e++++ ++ ++l +i++++ke++ +k+++e n+ek T038091_2 742 MGKKQ---SRKTGNSKKQRASPPPKERSSSPAT--EQSWTGNDFDELREEGFRR*NY-SKL*E-EIQTNGKEVKnLEKKLDEwipritNAEKS 827 79999...9************************..*****************98885.54555.589******98899999944444444444 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkil 176 l kel+elk+k++e ++e++ sl+sr+d+leervsa++de++ + + e+k+rekr+k++ T038091_2 828 L------------------KELMELKAKAREQREECR------------------SLRSRCDQLEERVSAMQDEMNAM-K*EGKFREKRIKRN 883 4..................59****************..................*********************99.5669********** PP HHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHH CS Transposase_22 177 eqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavr 269 eqslq+ +d+vkrPnlrli v+es+ e+++klen+l++i++enfPnl+++an++iqei+r P+ + s+ra++rhiivr+tkv++k+k l+a+r T038091_2 884 EQSLQETWDYVKRPNLRLICVPESDRENGTKLENTLQDIVQENFPNLARQANIQIQEIQRMPQIYYSRRATPRHIIVRFTKVEMKEKKLRAAR 976 ********************************************************************************************* PP HHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSS CS Transposase_22 270 ekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdr 360 ekGrvt kGkPirl adlsaetl+arrew+++++ilke++fqP ++yPakls+i++Geik+f k++lr++++trPalk+llke ++er++ T038091_2 977 EKGRVTHKGKPIRLPADLSAETLQARREWGPIFNILKENNFQPSISYPAKLSFISEGEIKYFTYKQMLRHFVTTRPALKELLKEalNMERNNW 1069 ********************************************************************************************* PP XXXXXXX CS Transposase_22 361 yqaleqa 367 yq+l+++ T038091_2 1070 YQPLQKH 1076 *****98 PP == domain 2 score: -4.9 bits; conditional E-value: 2.1 XXXXXXXXXXX..XXX..XXXXXXXXXX....XXXXXXX..................XXXXXXXXXXXXXX CS Transposase_22 56 fykelkelies..kak..elealkekee....ntekqlkiikekqentskqvmemnkellelktkvdelkk 118 y++l + ++ ++k l+a k+k+e +t i ekqe+t + +e+ ++++ +e+ T038091_2 1384 TYQNLWDTFKAvcRGKfiALNAHKKKQErpkiDTLTPQLIGLEKQEQTHSKAS-RRQEITKIRAELKEIET 1453 45555444433113331156688888888877554444456788888866543.45567777777666644 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.0 5.6e-11 2.3e-07 1 113 [] 1112 1331 .. 1112 1331 .. 0.86 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 5.6e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d v ++qE++ ++ +l+ + ++ + ++++ gva l++ + + T038091_2 1112 LTLNVNG----LNAPVKRHRLANWIKSQDSSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAFLISDEPDFQptkikrdkeghyiml 1201 699****....77788899******************999888777766688556677788888899999999999555577899999999999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++G fN+ T038091_2 1202 kgsiqqeeltilkiyasntgaprfikqvlsdlqrdldshTIIMGEFNTplstldrstgqkvnkhtqelnsalhqadlidiyrtlhpksteytff 1295 999999999999999999999999999999999999999*********9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l +r + + + SDH T038091_2 1296 saphhtysKIDHIVGSKALLSKRKRTEIITNClSDH 1331 9999988888******97777777666665557999 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 3.3 5.7e-07 0.0023 28 81 .. 825 884 .. 816 896 .. 0.73 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 5.7e-07 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsksk 81 e++lke + k ++ r +++E sL r +qLe rv+++q+e++ + K++ +++ T038091_2 825 EKSLKELMELK-AKAREQREECRSLRSRCDQLEERVSAMQDEMNAMK*egkfreKRIKRNE 884 45666655555.5679999*************************99888533322222222 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.3 9.4e-05 0.38 2 17 .. 184 199 .. 184 199 .. 0.92 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 9.4e-05 DUF1725 2 FagKWMELEnIILSEi 17 Fag+WME E LSE+ T038091_2 184 FAGTWMEPEAMFLSEV 199 9******999999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1094 (0.0670919); expected 326.1 (0.02) Passed bias filter: 307 (0.0188274); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 9661.58 // Query: T038091_3 [L=1924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-44 150.8 3.4 5.4e-44 150.2 3.4 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.2 3.4 3.3e-48 5.4e-44 1 209 [. 1617 1844 .. 1617 1862 .. 0.94 Alignments for each domain: == domain 1 score: 150.2 bits; conditional E-value: 3.3e-48 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl+++d k+lnk++a + ++++kl++++q+gf +g + + ++ +++++++++k k++++++ D +kaFd+++ + T038091_3 1617 IPKPGrdttkKENFRPISLMNIDAKILNKILAn*iQ---QHIKKLIHHDQVGFISGMQGWFNIcksvNVIQHINRAKDKNHMIISTDAEKAFDKIQQH 1711 899999999999******************964434...688888*****************9***9999999999********************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l+++ ++ + +++ +++++++++++ +n+++ ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T038091_3 1712 FMLKTLNKLVIDGTYLKITRAIYKKPTANIILNEQKLDAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLE 1809 ***********************************99*********************************99************************** PP SHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE... CS RVT_1 176 skee.lqelleaveewlkesglkinpeKtklvlfs 209 +++ +q+ll+ ++++ k sg+kin +K++++l++ T038091_3 1810 NPTVsAQNLLKLISNFSKVSGYKINVQKSQAFLYT 1844 *8877***************************873 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 10792.62 // Query: T360817_1 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2142.70 // Query: T360817_2 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 2233.88 // Query: T360817_3 [L=366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2094.13 // Query: T144061_1 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 5587.75 // Query: T144061_2 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.46 # Mc/sec: 5703.00 // Query: T144061_3 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.45 # Mc/sec: 5829.74 // Query: T000483_1 [L=3383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.27s 00:00:01.37 Elapsed: 00:00:00.57 # Mc/sec: 16686.53 // Query: T000483_2 [L=3383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.54 # Mc/sec: 17922.57 // Query: T000483_3 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.28s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 17277.37 // Query: T260630_1 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.8 7.3 5.9 9 6.1 5.9 1.5 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 5.9 0.00055 9 49 69 .. 519 539 .. 513 551 .. 0.53 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.00055 Lamprin 49 gygglgvaglgvaglgygglg 69 g+ glg+aglg aglg+ g g T260630_1 519 GWAGLGWAGLGWAGLGWAGRG 539 444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 371 (0.0227524); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 10860.15 // Query: T260630_2 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 11073.09 // Query: T260630_3 [L=1974] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.87 9.4 7.1 2 8.2 7.1 1.5 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 7.1 0.00012 2 41 74 .. 517 551 .. 509 564 .. 0.70 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00012 Lamprin 41 gglgygglgygglgvaglgvagl.gygglgypgaa 74 g lg+ glg+ glg+aglg ag g+ g pg+a T260630_3 517 GRLGWAGLGWAGLGWAGLGGAGReGWRGRRGPGSA 551 55777778888888888777774366666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1974 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10655.24 // Query: T297824_1 [L=7968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.31s 00:00:01.92 Elapsed: 00:00:00.60 # Mc/sec: 37991.82 // Query: T297824_2 [L=7968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.34s 00:00:02.04 Elapsed: 00:00:00.60 # Mc/sec: 37991.82 // Query: T297824_3 [L=7967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00042 19.8 0.0 0.00069 19.1 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.011 15.1 0.0 0.023 14.1 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.0 8.5e-08 0.00069 138 181 .. 651 694 .. 645 698 .. 0.95 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 8.5e-08 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + rr+t dp+ + + + + fi+qsa+di+ T297824_3 651 KNPAQFMARLAATLRRFTALDPKRSKGRVILNIHFITQSAPDIK 694 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 2.8e-06 0.023 66 145 .. 1079 1139 .. 1055 1141 .. 0.83 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 2.8e-06 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE.SB--ST-TTHHHHHHH CS RVT_1 66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryek.kglpqGsvlSPllfnl 145 ++ ++++ lDlk aF+++pl+ +++l+af+ ++ + e + ++ ++lpqG++ SP fn T297824_3 1079 ASTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDP--------------------DTHEAQQIT*AVLPQGFTDSPHYFNQ 1139 56799**************************9965....................33356666677999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.69u 0.29s 00:00:01.98 Elapsed: 00:00:00.60 # Mc/sec: 37987.05 // Query: T325789_1 [L=2031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.23s 00:00:00.99 Elapsed: 00:00:00.49 # Mc/sec: 11857.85 // Query: T325789_2 [L=2031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 9078.67 // Query: T325789_3 [L=2030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.25s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 10559.06 // Query: T164572_1 [L=3739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.63 # Mc/sec: 16978.80 // Query: T164572_2 [L=3739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.72 # Mc/sec: 14856.45 // Query: T164572_3 [L=3739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.63 # Mc/sec: 16978.80 // Query: T111770_1 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 4895.71 // Query: T111770_2 [L=1061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 4399.04 // Query: T111770_3 [L=1060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 4971.28 // Query: T317348_1 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 3367.34 // Query: T317348_2 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 3603.64 // Query: T317348_3 [L=718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 3209.49 // Query: T090329_1 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.63 # Mc/sec: 8528.00 // Query: T090329_2 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.75 # Mc/sec: 7163.52 // Query: T090329_3 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-43 145.0 22.8 1.8e-31 108.0 11.6 2.6 2 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.2 3.4 3.8e-15 6.2e-11 12 57 .. 179 224 .. 171 228 .. 0.89 2 ! 108.0 11.6 1.1e-35 1.8e-31 13 89 .] 233 308 .. 233 308 .. 0.98 Alignments for each domain: == domain 1 score: 42.2 bits; conditional E-value: 3.8e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpne 57 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090329_3 179 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKVSR 224 566889*************************************865 PP == domain 2 score: 108.0 bits; conditional E-value: 1.1e-35 Colipase-like 13 lngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 +ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090329_3 233 PNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 308 79******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 8665.55 // Query: T337181_1 [L=6564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1555 (0.0953637); expected 326.1 (0.02) Passed bias filter: 400 (0.0245308); expected 326.1 (0.02) Passed Vit filter: 304 (0.0186434); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.42u 0.59s 00:00:06.01 Elapsed: 00:00:01.23 # Mc/sec: 15267.06 // Query: T337181_2 [L=6564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1878 (0.115172); expected 326.1 (0.02) Passed bias filter: 511 (0.0313382); expected 326.1 (0.02) Passed Vit filter: 450 (0.0275972); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.45u 0.50s 00:00:07.95 Elapsed: 00:00:01.48 # Mc/sec: 12688.17 // Query: T337181_3 [L=6564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1497 (0.0918067); expected 326.1 (0.02) Passed bias filter: 295 (0.0180915); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.48u 0.44s 00:00:04.92 Elapsed: 00:00:01.17 # Mc/sec: 16049.99 // Query: T338639_1 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 14.2 17.1 0.028 13.7 17.1 1.1 1 DUF1510 Protein of unknown function (DUF1510) 0.24 10.0 21.4 0.34 9.5 21.4 1.1 1 NPR3 Nitrogen Permease regulator of amino acid transport Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 17.1 3.4e-06 0.028 28 117 .. 894 991 .. 880 1000 .] 0.36 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 3.4e-06 DUF1510 28 vivaaslfigsksde.......eekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekek.eedaeenaevteess 117 ++v++ + + s++ +e+++++e e ++e++ ++++e + + e+e+++e + e+e++k+ e e k e+e++++ e++ + ++e ++e + T338639_1 894 IVVGYDVSVSSNETPnwtvykrRERKRERERERKREKERERERERKRKREKEKEREREREQEREKKRARERERKREQEREKErERERKREKERERERK 991 34555555555543357666552222222222222222233333333333333333333333333333332222222222221222222222222222 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 21.4 4.2e-05 0.34 30 123 .. 894 991 .. 877 999 .. 0.47 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 4.2e-05 NPR3 30 aFlGlPvhvdedg..kwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededdeeseke..eeeke 123 + +G+ v v++++ +w k++++k +r+r++++++++++e+++k+++++++e ++e+++++e+++++e e+++e+++e++++ e ++++ e+e++ T338639_1 894 IVVGYDVSVSSNEtpNWTVYKRRERKRERERERKREKERERERERKRKREKEKEREREREQEREKKRARERERKREQEREKERERERKREKerERERK 991 56888899988886667666555544444444444444444433333333333333333333333333333333333333333333222221111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1652 (0.101312); expected 326.1 (0.02) Passed bias filter: 512 (0.0313995); expected 326.1 (0.02) Passed Vit filter: 288 (0.0176622); expected 16.3 (0.001) Passed Fwd filter: 57 (0.00349565); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.69u 0.40s 00:00:02.09 Elapsed: 00:00:00.78 # Mc/sec: 3667.73 // Query: T338639_2 [L=1000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 13.7 17.7 0.042 13.2 17.7 1.1 1 DUF1510 Protein of unknown function (DUF1510) 5.1 5.6 21.3 6.9 5.2 21.3 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 17.7 5.1e-06 0.042 35 115 .. 912 992 .. 893 999 .. 0.31 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 5.1e-06 DUF1510 35 figsksdeeekasddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevtee 115 fi++++++e +++ + e++ e+e+++e + e +++ e+eke++ +++ e++ e e e+++e + eke+e++ + ++e ++e T338639_2 912 FIKGEREREREKERERERKREKEKERERERERKRKREKEKESKRERKREQERERERESKRERKREKERERERKREKERERE 992 444443322222222222222222222222222222222222222222233333333333333333333333332222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 21.3 0.00084 6.9 234 310 .. 918 993 .. 894 1000 .] 0.27 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.00084 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeee 310 ++++e+e+e+e+k+e+++e+++e+e+++ + ek+++s++++++e+e+++e es+ e+++e+++e+e+++++e+e+e+ T338639_2 918 EREREKERERERKREKEKERERERERKR-KREKEKESKRERKREQERERERESKRERKREKERERERKREKERERER 993 2222222222222111111111111111.111111111122222222222222222222222211111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1604 (0.0983687); expected 326.1 (0.02) Passed bias filter: 597 (0.0366123); expected 326.1 (0.02) Passed Vit filter: 308 (0.0188888); expected 16.3 (0.001) Passed Fwd filter: 57 (0.00349565); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.69u 0.43s 00:00:02.12 Elapsed: 00:00:00.89 # Mc/sec: 3214.42 // Query: T338639_3 [L=999] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (999 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1537 (0.0942598); expected 326.1 (0.02) Passed bias filter: 469 (0.0287624); expected 326.1 (0.02) Passed Vit filter: 248 (0.0152091); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.84 # Mc/sec: 3402.34 // Query: T138740_1 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 9484.75 // Query: T138740_2 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 10629.46 // Query: T138740_3 [L=2154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 11204.05 // Query: T324545_1 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-34 117.5 484.8 1.3e-15 57.2 9.2 41.5 37 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.6 1.8 0.00012 1.9 9 45 .. 1 36 [. 1 38 [. 0.88 2 ? 1.3 1.1 0.023 3.7e+02 18 39 .. 30 51 .. 27 51 .. 0.91 3 ! 5.6 4.7 0.001 17 19 49 .. 62 94 .. 58 94 .. 0.87 4 ? -4.5 4.9 1 1.6e+04 7 46 .. 99 145 .. 97 145 .. 0.51 5 ? 1.4 0.7 0.021 3.4e+02 38 49 .. 155 166 .. 148 166 .. 0.82 6 ! 12.0 15.2 1e-05 0.17 1 40 [. 172 243 .. 172 246 .. 0.94 7 ! 6.1 2.4 0.0007 11 30 49 .. 264 283 .. 259 284 .. 0.80 8 ! 4.5 6.9 0.0023 37 13 48 .. 290 344 .. 284 346 .. 0.65 9 ? 2.3 1.2 0.011 1.8e+02 7 27 .. 346 366 .. 345 373 .. 0.81 10 ? 0.2 0.1 0.049 8e+02 1 13 [. 361 373 .. 361 381 .. 0.84 11 ! 10.6 2.4 2.9e-05 0.47 3 29 .. 384 410 .. 382 413 .. 0.91 12 ! 4.2 15.4 0.0028 45 1 50 [] 414 485 .. 414 485 .. 0.84 13 ! 9.8 5.0 5e-05 0.81 7 43 .. 485 520 .. 484 525 .. 0.92 14 ! 20.4 15.6 2.4e-08 0.0004 2 49 .. 533 579 .. 532 579 .. 0.94 15 ? -2.0 0.0 0.24 3.9e+03 7 15 .. 580 587 .. 580 592 .. 0.81 16 ! 15.1 1.1 1.1e-06 0.018 1 15 [. 595 608 .. 595 615 .. 0.82 17 ! 20.5 12.7 2.3e-08 0.00037 1 34 [. 616 661 .. 616 664 .. 0.98 18 ! 23.7 27.5 2.3e-09 3.8e-05 1 50 [] 670 753 .. 670 753 .. 0.95 19 ! 9.2 6.7 7.8e-05 1.3 29 50 .] 753 774 .. 752 774 .. 0.97 20 ! 21.2 2.9 1.4e-08 0.00023 17 50 .] 774 807 .. 774 807 .. 0.96 21 ! 57.2 9.2 7.8e-20 1.3e-15 1 50 [] 812 859 .. 812 859 .. 0.99 22 ? 0.2 3.1 0.051 8.3e+02 5 27 .. 860 894 .. 860 895 .. 0.84 23 ? 1.1 16.5 0.026 4.2e+02 2 50 .] 890 950 .. 889 950 .. 0.77 24 ? -2.7 0.3 0.42 6.8e+03 6 35 .. 1092 1137 .. 1091 1145 .. 0.58 25 ! 3.0 6.5 0.0069 1.1e+02 14 38 .. 1233 1258 .. 1215 1264 .. 0.79 26 ? -5.1 16.5 1 1.6e+04 7 37 .. 1316 1345 .. 1254 1346 .. 0.85 27 ? 0.8 15.2 0.032 5.2e+02 2 31 .. 1343 1375 .. 1342 1390 .. 0.77 28 ? -5.6 6.2 1 1.6e+04 5 33 .. 1402 1440 .. 1401 1452 .. 0.62 29 ? -1.0 2.0 0.12 2e+03 5 33 .. 1494 1532 .. 1490 1545 .. 0.77 30 ? -2.4 0.1 0.34 5.5e+03 6 11 .. 1554 1559 .. 1540 1607 .. 0.52 31 ! 6.3 4.7 0.0006 9.9 18 39 .. 1700 1722 .. 1689 1736 .. 0.83 32 ! 9.4 5.3 6.8e-05 1.1 1 26 [. 1749 1773 .. 1749 1775 .. 0.96 33 ! 11.9 0.2 1.1e-05 0.19 2 13 .. 1783 1794 .. 1783 1802 .. 0.87 34 ! 13.9 0.9 2.6e-06 0.042 1 13 [. 1803 1815 .. 1803 1830 .. 0.92 35 ! 16.2 9.2 5e-07 0.0081 1 37 [. 1835 1883 .. 1835 1885 .. 0.95 36 ? 2.1 14.4 0.013 2.1e+02 1 26 [. 1880 1926 .. 1880 1926 .. 0.73 37 ! 15.5 4.9 8.2e-07 0.013 14 39 .. 1937 1962 .. 1928 1976 .. 0.89 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00012 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 ++ q + +l+ +l ps++L +As G+ p L++ T324545_1 1 WHPQ-AKLLPFGSLYGPSSCLAMASLGQAHAPRRLFQ 36 6778.999********************998888776 PP == domain 2 score: 1.3 bits; conditional E-value: 0.023 DUF4705 18 qasglsrpsaqLpvAsaGpklp 39 ++++l ++ + + +A +Gp++p T324545_1 30 APRRLFQAQLLPFAACPGPECP 51 5889999**************8 PP == domain 3 score: 5.6 bits; conditional E-value: 0.001 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T324545_1 62 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 94 78999***************65557999*9997 PP == domain 4 score: -4.5 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqas...glsrpsa.qLpvAsaGpkl...ppagLsrP 46 ++ +L+ p sl+ + +l p a +Lp++ +pk p +gL rP T324545_1 99 FQAHLRPPSSLSNQtipSLRPPKAkFLPASRHPPKTehlPHGGLPRP 145 66677755555544111344444423455555555566677777777 PP == domain 5 score: 1.4 bits; conditional E-value: 0.021 DUF4705 38 lppagLsrPssC 49 lp gL+rP+sC T324545_1 155 LPHNGLFRPKSC 166 588899999999 PP == domain 6 score: 12.0 bits; conditional E-value: 1e-05 DUF4705 1 PgpAPasrrpLqa...............................paslqasglsrpsaqLpvAsaGpkl.pp 40 Pg A as++ Lqa + l+ +l rps++L +As Gp + ++ T324545_1 172 PGTALASWQALQAqilqklaspnsapascrltqaqtlttq*tlqAHHLPEHSLLRPSSCLLAASTGPAPaSQ 243 8999***************************************************************98555 PP == domain 7 score: 6.1 bits; conditional E-value: 0.0007 DUF4705 30 pvAsaGpklppagLsrPssC 49 ++ pklpp+++srPss+ T324545_1 264 LTHTPVPKLPPVSRSRPSSS 283 5556779***********97 PP == domain 8 score: 4.5 bits; conditional E-value: 0.0023 DUF4705 13 a.....................paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 a ++ q++ sr s+ ++s+ p+l p+gLsrPss T324545_1 290 AkivlkspsaglapaskccvgqANASQHT--SRLSVSFCASSPSPELTPVGLSRPSS 344 55555555555555555555445555555..455666669***************98 PP == domain 9 score: 2.3 bits; conditional E-value: 0.011 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T324545_1 346 SQWPLQAKTVLKSASPGPTPS 366 789999878888888887775 PP == domain 10 score: 0.2 bits; conditional E-value: 0.049 DUF4705 1 PgpAPasrrpLqa 13 Pgp P r+ Lqa T324545_1 361 PGPTPSYRWLLQA 373 9***********6 PP == domain 11 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA as++pLq + l++ +++ +s ++ T324545_1 384 PALASKWPLQEQNFLKSASPGPASCFP 410 9********************999876 PP == domain 12 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 1 PgpAPasrrpLqa..........paslqasg.lsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 +gpA as++ L+a p +l + g l rps+ L+vAs p+ p gL+r ssCL T324545_1 414 TGPASASQQTLHAqlfpvcclssPKLLLPFGnLYRPSSSLTVASFRPTHascnlpkcqllPHTGLLRLSSCL 485 8***********999999999998877665537899999999999888777788888888888888888887 PP == domain 13 score: 9.8 bits; conditional E-value: 5e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +++p + ++ l+ sgl rp++ L+v s+Gp l+ gL T324545_1 485 LWWPQR-AQPLPVSGLYRPGLYLTVGSPGPPLSHRGL 520 799988.*************************98877 PP == domain 14 score: 20.4 bits; conditional E-value: 2.4e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T324545_1 533 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 579 9********995..4689999**************************97 PP == domain 15 score: -2.0 bits; conditional E-value: 0.24 DUF4705 7 srrpLqapa 15 srrpLq ++ T324545_1 580 SRRPLQ-AQ 587 79****.66 PP == domain 16 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasrrpLqa + T324545_1 595 PGPAPASRRPLQA-Q 608 9***********4.4 PP == domain 17 score: 20.5 bits; conditional E-value: 2.3e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsa 34 PgpAPasrrpL+ pas+++ l +ps++Lp+A++ T324545_1 616 PGPAPASRRPLRVqkflesaspgpapPASQWPL-LAQPSSCLPAAFP 661 9***********9********************.***********96 PP == domain 18 score: 23.7 bits; conditional E-value: 2.3e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+As+Gp++p++gLsrP+++L T324545_1 670 TGPASASQRTLHAqlalaslqppeskapasrplrqaqlppasglfrPMgLIPHNGLSRPSFSLPAASPGPEPPQVGLSRPTCSL 753 8*********************************************6515699*****************************98 PP == domain 19 score: 9.2 bits; conditional E-value: 7.8e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T324545_1 753 LPASSPGPALPPGCVSRPDCCL 774 9********************9 PP == domain 20 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T324545_1 774 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 807 6889****************************87 PP == domain 21 score: 57.2 bits; conditional E-value: 7.8e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T324545_1 812 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 859 9*********************************************..97 PP == domain 22 score: 0.2 bits; conditional E-value: 0.051 DUF4705 5 PasrrpLqa............paslqasglsrpsa 27 Pas++ L a p+ lq+s+++ p a T324545_1 860 PASKQALLAqllpssqppl*aPNFLQPSSSGPPTA 894 88999998888888888888899999999998865 PP == domain 23 score: 1.1 bits; conditional E-value: 0.026 DUF4705 2 gpAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl..ppagLsrPssCL 50 gp asr+p qa + s + + p + +++As+G+++ pa++ rPss+L T324545_1 890 GPPTASRWPVQAqlwl*nslcrSRSCLPGASPGPALAPTAASRGQVPacLPAARVRPSSSL 950 77789******88888888888666666666667778888888877788679999999998 PP == domain 24 score: -2.7 bits; conditional E-value: 0.42 DUF4705 6 asrrpLqa................paslqasglsrpsaqLpvAsaG 35 as++pL a l a + +++ + A +G T324545_1 1092 ASHWPLPRgersa*apastghregGAGLHAGCREQAGTWPREAAVG 1137 8899986566666665555555555555555555555555555555 PP == domain 25 score: 3.0 bits; conditional E-value: 0.0069 DUF4705 14 paslqasg.lsrpsaqLpvAsaGpkl 38 p+sl+as+ + r+ ++Lp+As+Gp+ T324545_1 1233 PDSLAASRhPLRAQLFLPAASPGPTA 1258 78887665489*************86 PP == domain 26 score: -5.1 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpk 37 s + L+ + +l++ gl rps++ AsaGp T324545_1 1316 SSQALR-AHLLPPGGLYRPSSGCRTASAGPA 1345 456677.999999999999999999999997 PP == domain 27 score: 0.8 bits; conditional E-value: 0.032 DUF4705 2 gpAPasrrpLqa...paslqasglsrpsaqLpv 31 gpA as+ pLqa p+++++ s p ++ p+ T324545_1 1343 GPALASQGPLQAqlsPPRQPPGAKSLPASRQPA 1375 9**********9999999999988888765544 PP == domain 28 score: -5.6 bits; conditional E-value: 1 DUF4705 5 PasrrpLqa.............paslqasglsrpsaqLpvAs 33 Pas+rpL p++ + + + s +Lp+A+ T324545_1 1402 PASHRPLPRrersa*apcltpaPPTPREV---SMSPCLPPAP 1440 89999997778888877776543333333...3344666554 PP == domain 29 score: -1.0 bits; conditional E-value: 0.12 DUF4705 5 PasrrpLqa.............paslqasglsrpsaqLpvAs 33 as++pL p++++ + + +L++A+ T324545_1 1494 LASHWPLPR*qrsv*apcftlaPPTQREV---SVTPCLTPAP 1532 6999***8899999999999999999999...3333555554 PP == domain 30 score: -2.4 bits; conditional E-value: 0.34 DUF4705 6 asrrpL 11 as+rpL T324545_1 1554 ASHRPL 1559 344444 PP == domain 31 score: 6.3 bits; conditional E-value: 0.0006 DUF4705 18 qasglsrpsaqLpvAsaGpkl.p 39 +++++ r+ ++Lp+As+Gp++ + T324545_1 1700 ASRRPLRAQLFLPAASPGPTPaS 1722 57889999**********99854 PP == domain 32 score: 9.4 bits; conditional E-value: 6.8e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+p q +++l++ g srp T324545_1 1749 PGPGQASRWPRQ-AQLLPSDGISRPQ 1773 9***********.***********96 PP == domain 33 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqa 13 gpA+asrrpLqa T324545_1 1783 GPAWASRRPLQA 1794 9**********7 PP == domain 34 score: 13.9 bits; conditional E-value: 2.6e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T324545_1 1803 PGPAPASRRPLQA 1815 9***********6 PP == domain 35 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpL pas+++ + +ps+ L vA++Gp T324545_1 1835 PGPAPSSRRPLPVqnflesaspgpasPASQWPL-SAQPSSWLSVAFPGPA 1883 9**********7788******************.89*************7 PP == domain 36 score: 2.1 bits; conditional E-value: 0.013 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps 26 PgpA +++pLqa ++ +++sgls+ps T324545_1 1880 PGPAFDFWWPLQAqnltssrplqawlpasrrpaqAQPQPHSGLSTPS 1926 9***********77777777777777777776666667777777665 PP == domain 37 score: 15.5 bits; conditional E-value: 8.2e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l+ ++++ps++LpvAs Gp + T324545_1 1937 PKLLPFGRFGSPSSCLPVASLGPAHS 1962 8999*******************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.82 # Mc/sec: 7166.03 // Query: T324545_2 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-11 43.2 61.4 5.3e-08 32.8 3.9 42.7 34 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 17.0 0.73 1.2e+04 1 39 [. 14 76 .. 14 85 .. 0.63 2 ! 2.5 8.2 0.0093 1.5e+02 1 50 [] 66 126 .. 66 126 .. 0.87 3 ! 2.9 0.3 0.0073 1.2e+02 17 37 .. 126 146 .. 123 156 .. 0.77 4 ? -0.9 13.4 0.11 1.8e+03 2 33 .. 162 224 .. 161 224 .. 0.76 5 ! 19.6 2.6 4.4e-08 0.00072 2 35 .. 226 258 .. 226 262 .. 0.93 6 ? 1.2 0.7 0.025 4.1e+02 29 49 .. 273 293 .. 267 293 .. 0.82 7 ! 4.7 0.9 0.0019 31 28 47 .. 334 353 .. 325 357 .. 0.85 8 ? -1.8 6.4 0.2 3.3e+03 6 24 .. 376 393 .. 354 398 .. 0.59 9 ! 7.5 9.3 0.00026 4.2 9 39 .. 400 440 .. 396 444 .. 0.83 10 ? 0.5 16.6 0.042 6.8e+02 1 36 [. 447 502 .. 447 515 .. 0.64 11 ! 15.2 13.3 1e-06 0.017 1 38 [. 500 557 .. 500 567 .. 0.87 12 ! 3.9 3.2 0.0034 55 28 47 .. 568 587 .. 561 591 .. 0.87 13 ? -0.8 1.6 0.11 1.7e+03 12 49 .. 595 610 .. 588 619 .. 0.64 14 ? -10.9 19.2 1 1.6e+04 7 42 .. 632 665 .. 631 683 .. 0.75 15 ! 15.9 2.1 6.5e-07 0.011 12 37 .. 693 717 .. 688 723 .. 0.90 16 ? -0.1 0.0 0.06 9.9e+02 27 39 .. 719 731 .. 718 732 .. 0.90 17 ! 3.8 12.6 0.0037 60 7 38 .. 732 772 .. 727 782 .. 0.83 18 ! 16.1 2.3 5.5e-07 0.009 1 26 [. 801 825 .. 801 827 .. 0.95 19 ? -6.5 10.3 1 1.6e+04 1 29 [. 834 872 .. 834 904 .. 0.61 20 ! 5.5 1.0 0.0011 18 7 38 .. 884 914 .. 879 914 .. 0.91 21 ? 0.8 16.2 0.032 5.2e+02 2 28 .. 911 951 .. 910 955 .. 0.69 22 ? -5.8 9.7 1 1.6e+04 2 14 .. 945 992 .. 944 1044 .. 0.70 23 ? -0.8 0.5 0.1 1.6e+03 23 46 .. 1139 1166 .. 1121 1167 .. 0.72 24 ? -4.6 10.5 1 1.6e+04 7 27 .. 1228 1247 .. 1222 1281 .. 0.50 25 ! 32.8 3.9 3.2e-12 5.3e-08 19 50 .] 1295 1326 .. 1284 1326 .. 0.95 26 ! 22.3 19.5 6.1e-09 0.0001 1 50 [] 1331 1392 .. 1331 1392 .. 0.98 27 ? -5.9 6.1 1 1.6e+04 4 41 .. 1433 1473 .. 1433 1493 .. 0.55 28 ? -3.2 0.4 0.56 9.1e+03 6 23 .. 1527 1559 .. 1525 1562 .. 0.65 29 ? -0.9 0.2 0.11 1.8e+03 28 46 .. 1606 1628 .. 1589 1629 .. 0.74 30 ? -1.1 23.4 0.12 2e+03 7 49 .. 1711 1797 .. 1684 1797 .. 0.80 31 ? 0.1 12.9 0.052 8.5e+02 9 39 .. 1800 1840 .. 1799 1851 .. 0.63 32 ? -2.6 13.6 0.37 6e+03 7 46 .. 1851 1903 .. 1849 1905 .. 0.84 33 ? -4.3 15.9 1 1.6e+04 1 50 [] 1869 1941 .. 1869 1941 .. 0.86 34 ! 6.8 2.4 0.00044 7.2 3 28 .. 1948 1972 .. 1947 1976 .. 0.88 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.73 DUF4705 1 PgpAPasrrpL.qa....................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + l + s ++a +p As Gp++ p T324545_2 14 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaQNVLNS--ASPGRAHPPSASTGPSPasqqpP 76 8*********995446666777777777765542223333..35555677777777777655544 PP == domain 2 score: 2.5 bits; conditional E-value: 0.0093 DUF4705 1 PgpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p a + + lsrp ++Lp+Asa +p g ++Ps +L T324545_2 66 TGPSPASQQPPLAqlllsclavsvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 126 79999999975566999999999977777888*************9999999999999887 PP == domain 3 score: 2.9 bits; conditional E-value: 0.0073 DUF4705 17 lqasglsrpsaqLpvAsaGpk 37 l++ l + s +L+vAs+G + T324545_2 126 LPHGILRKLSICLTVASPGHE 146 66666667799********87 PP == domain 4 score: -0.9 bits; conditional E-value: 0.11 DUF4705 2 gpAPasrrpLqa...............................paslqasglsrpsaqLpvAs 33 gp a rr Lqa p +l++s++srp +L +As T324545_2 162 GPSHAKRRTLQAqllppgrlcrpkfskswplltqllphvglhrPRLLPHSRPSRPTTCLSIAS 224 677788888888888888888888888888887777777777788888888888888888776 PP == domain 5 score: 19.6 bits; conditional E-value: 4.4e-08 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaG 35 g+APa+++ Lq +++l+ ++l rp+++ vA++ T324545_2 226 GQAPAFWQLLQ-AQLLPRNCLCRPRSCREVAFPS 258 89*********.*******************985 PP == domain 6 score: 1.2 bits; conditional E-value: 0.025 DUF4705 29 LpvAsaGpklppagLsrPssC 49 L A +G+ lpp g rP+s+ T324545_2 273 LQSAGPGQALPPNGFCRPKSS 293 666888999999999999986 PP == domain 7 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T324545_2 334 LLQLASPDQALPPSGLYRPK 353 6889***************6 PP == domain 8 score: -1.8 bits; conditional E-value: 0.2 DUF4705 6 asrrpLqapaslqasglsr 24 +s +pL+ +++l+ sglsr T324545_2 376 TSSQPLH-TQLLPLSGLSR 393 3455666.66666666655 PP == domain 9 score: 7.5 bits; conditional E-value: 0.00026 DUF4705 9 rpLqa..........paslqasglsrpsaqLpvAsaGpklp 39 rpLqa ++ l++s+ s+ps+ L +As+ ++++ T324545_2 400 RPLQAqppasqghvqAQPLPHSRHSTPSSSLSAASPVQSCS 440 666666666666666*********************99997 PP == domain 10 score: 0.5 bits; conditional E-value: 0.042 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGp 36 +gpAP sr+pL a ++ gl ps +L +As Gp T324545_2 447 TGPAPPSRWPLFAqlmplatcpsvsscltlac*GSAHASGGLNGPSPCLSAASTGP 502 8***********55555555555555555555544445555555555555555555 PP == domain 11 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T324545_2 500 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 557 688888888888888888888888888888888**********************876 PP == domain 12 score: 3.9 bits; conditional E-value: 0.0034 DUF4705 28 qLpvAsaGpklppagLsrPs 47 +L As+Gp lp +gL rP+ T324545_2 568 FLQSASPGPALPLGGLCRPR 587 5778***************6 PP == domain 13 score: -0.8 bits; conditional E-value: 0.11 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 q G+ pp++L rP+s+ T324545_2 595 Q----------------------GQLQPPGALCRPKSS 610 4......................444456666666554 PP == domain 14 score: -10.9 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppag 42 s +pLqa +l++sgl +ps + As+ p++ppa+ T324545_2 632 SSQPLQAQLLLPPSGLFWPS--PAHASRRPSRPPAS 665 56888866667888888887..77788888887764 PP == domain 15 score: 15.9 bits; conditional E-value: 6.5e-07 DUF4705 12 qapaslqasglsrpsaqLpvAsaGpk 37 p +l+ +++rps++LpvAs Gp T324545_2 693 S-PKLLPLGRFGRPSSRLPVASSGPW 717 4.999*******************95 PP == domain 16 score: -0.1 bits; conditional E-value: 0.06 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A+ Gp++p T324545_2 719 SFLTTAFLGPVFP 731 79********997 PP == domain 17 score: 3.8 bits; conditional E-value: 0.0037 DUF4705 7 srrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 +rrpL+a p+ l+ ++++ r+ ++Lp+As+Gp+ T324545_2 732 FRRPLRAqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 772 79*************766651678***************86 PP == domain 18 score: 16.1 bits; conditional E-value: 5.5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T324545_2 801 PGPGQASRWPLQ-DQLLPSDGVSRPQ 825 9***********.9***********7 PP == domain 19 score: -6.5 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqa..........paslqasglsrpsaqL 29 P+pA+as r pLqa pas+q s + + +++ T324545_2 834 PRPAWAS-R*PLQAqvvlksaspgPASQQVSKPFWLNSCP 872 7888887.66788877777777777777755444444443 PP == domain 20 score: 5.5 bits; conditional E-value: 0.0011 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl 38 s + L+ + +l+ gl rps++ AsaGp l T324545_2 884 SSQALR-AHLLPLGGLYRPSFGCRTASAGPAL 914 567799.9**********************75 PP == domain 21 score: 0.8 bits; conditional E-value: 0.032 DUF4705 2 gpAPasrrpLqa..............paslqasglsrpsaq 28 gpA as+ pLqa pas+q+ + p+++ T324545_2 911 GPALASQGPLQAqlspprqppgdkslPASQQPACGPAPPSR 951 9**************55555555555555555555555554 PP == domain 22 score: -5.8 bits; conditional E-value: 1 DUF4705 2 gpAPasrrpLqa...................................p 14 gpAP sr+p a p T324545_2 945 GPAPPSRWPVDAqlmplapcpea*vpashrplpr*grsa*apcltpaP 992 788888888874444444444444444444444455555555555555 PP == domain 23 score: -0.8 bits; conditional E-value: 0.1 DUF4705 23 srpsaqLpvAsaGpkl....ppagLsrP 46 s++ ++ A+aGp p++gL rP T324545_2 1139 SWAWRRPWEATAGPADalllPELGLYRP 1166 5555566678888886667799999998 PP == domain 24 score: -4.6 bits; conditional E-value: 1 DUF4705 7 srrpLqapaslqasglsrpsa 27 s rpLq + ++++ ls ps+ T324545_2 1228 SSRPLQ-THLQPPGILSGPSS 1247 579999.66666655555543 PP == domain 25 score: 32.8 bits; conditional E-value: 3.2e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L+ P++CL T324545_2 1295 ASSFGSTPAQLPAAFVGPELSRAKLFGPTYCL 1326 589****************************9 PP == domain 26 score: 22.3 bits; conditional E-value: 6.1e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq +++l+++glsrps+++ + +Gp++ p +gL+ P sCL T324545_2 1331 TGPALAVEQPLQ-APLLPPRGLSRPSSRPHGSLPGPSPclppgspraaqfpPHGGLLMPNSCL 1392 8***********.*************************************9999********8 PP == domain 27 score: -5.9 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa.............paslqasglsrpsaqLpvAsaGpklppa 41 A as+rpL p p + + +++a+p ++++ T324545_2 1433 ALASHRPLPR*ersa*apcltlaP----------PTLTPCLTPAPPMPREV 1473 678888887677777744444442..........33333333333333333 PP == domain 28 score: -3.2 bits; conditional E-value: 0.56 DUF4705 6 asrrpLqa...............paslqasgls 23 as+rpL ++ l+++g+s T324545_2 1527 ASHRPLPR*evgvsplphtgpshTDPLPHTGPS 1559 788888767777666655665556666666666 PP == domain 29 score: -0.9 bits; conditional E-value: 0.11 DUF4705 28 qLpvAsaGpkl....ppagLsrP 46 ++ A+aGp p++gL rP T324545_2 1606 RPWEATAGPADalllPELGLYRP 1628 45558888876666788888888 PP == domain 30 score: -1.1 bits; conditional E-value: 0.12 DUF4705 7 srrpLqa................................paslqasglsrpsaqLpvAsaGpkl............ppagLsrPssC 49 sr +Lqa ++ ++ gl r s+++p As+Gpk+ pp+ L rP+sC T324545_2 1711 SRLHLQArlrppnnvfglssrpapsgpgrptts*sqapqAQVRPHGGLARLSSCPPTASPGPKRppvggll*aqlgPPGDLCRPKSC 1797 55666667777777777777777777777777777776677779********************77777777777777777777777 PP == domain 31 score: 0.1 bits; conditional E-value: 0.052 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpkl...........p 39 rpLq ++++++ gl rp + L Gp + p T324545_2 1800 RPLQ-AQLQPPGGLCRPKSSLSWPGSGPGRaaswppraqlrP 1840 9***.9999999988888888655555544444421114445 PP == domain 32 score: -2.6 bits; conditional E-value: 0.37 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a+g+ +ps + ++++G + pp+gL rP T324545_2 1851 SSQPLQAqlllpPSGLfrpsPARGSQWPSQAPLLTFGGLFRprt*PPVGLCRP 1903 67999999999744444444899***************999999********9 PP == domain 33 score: -4.3 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP..ssCL 50 P pA s++p qa p l+ gl+rps+ L+v s+ p + + +P ssCL T324545_2 1869 PSPARGSQWPSQAplltfgglfrprt*ppvglcrPGFLPLEGLHRPSLSLTVDSPRPASSRLTAASPvqSSCL 1941 678888999999999999999999999999999999***************9999998887777777555665 PP == domain 34 score: 6.8 bits; conditional E-value: 0.00044 DUF4705 3 pAPasrrpL..qapaslqasglsrpsaq 28 pAPa+++pL q + +++glsrp++ T324545_2 1948 PAPACQWPL*aQ---LIPHNGLSRPRFS 1972 9*******9955...**********875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 8903.25 // Query: T324545_3 [L=2054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-80 263.0 436.0 1.2e-16 60.5 7.3 40.4 36 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 7.8 3.7e-12 6e-08 2 50 .] 4 51 .. 3 51 .. 0.97 2 ? 0.9 0.1 0.029 4.8e+02 10 28 .. 64 81 .. 52 81 .. 0.82 3 ? -0.4 2.9 0.078 1.3e+03 1 33 [. 99 131 .. 99 133 .. 0.90 4 ! 16.4 5.2 4.2e-07 0.0069 4 44 .. 135 192 .. 135 198 .. 0.97 5 ! 11.0 0.1 2.1e-05 0.34 14 37 .. 226 249 .. 217 253 .. 0.89 6 ! 24.9 3.7 1e-09 1.6e-05 15 50 .] 269 304 .. 250 304 .. 0.81 7 ! 18.0 0.6 1.4e-07 0.0023 23 48 .. 339 364 .. 335 364 .. 0.89 8 ! 24.1 0.9 1.8e-09 2.9e-05 29 50 .] 366 387 .. 366 387 .. 0.99 9 ! 11.4 0.7 1.6e-05 0.27 31 47 .. 389 405 .. 389 408 .. 0.94 10 ! 4.7 0.9 0.002 32 14 39 .. 404 429 .. 404 433 .. 0.89 11 ! 10.0 2.6 4.4e-05 0.71 4 30 .. 439 464 .. 437 467 .. 0.92 12 ? 2.0 0.3 0.014 2.3e+02 3 18 .. 470 484 .. 469 488 .. 0.85 13 ! 16.3 18.8 4.7e-07 0.0077 1 50 [] 489 537 .. 489 554 .. 0.72 14 ! 21.2 6.4 1.4e-08 0.00023 2 50 .] 543 600 .. 543 600 .. 0.81 15 ! 18.9 6.7 7.4e-08 0.0012 22 50 .] 593 621 .. 593 621 .. 0.97 16 ! 16.1 9.6 5.6e-07 0.0091 15 49 .. 607 641 .. 605 643 .. 0.91 17 ! 4.7 11.1 0.0019 32 17 50 .] 630 675 .. 628 675 .. 0.82 18 ! 4.9 1.6 0.0017 27 14 36 .. 660 682 .. 659 691 .. 0.85 19 ! 11.6 11.8 1.4e-05 0.23 2 49 .. 704 762 .. 703 763 .. 0.90 20 ! 2.6 21.1 0.009 1.5e+02 10 42 .. 766 830 .. 741 849 .. 0.71 21 ! 31.0 5.5 1.2e-11 2e-07 20 50 .] 864 894 .. 853 894 .. 0.95 22 ! 12.3 21.3 8.3e-06 0.13 1 50 [] 899 960 .. 899 960 .. 0.96 23 ? -19.2 19.9 1 1.6e+04 38 38 .. 1033 1033 .. 985 1107 .. 0.60 24 ! 13.2 8.6 4.5e-06 0.073 18 50 .] 1227 1259 .. 1212 1259 .. 0.87 25 ! 15.7 1.5 7.3e-07 0.012 22 50 .] 1264 1290 .. 1260 1290 .. 0.92 26 ? -0.5 1.6 0.082 1.3e+03 5 26 .. 1291 1324 .. 1291 1326 .. 0.74 27 ? 1.2 17.5 0.025 4.1e+02 2 43 .. 1321 1361 .. 1320 1381 .. 0.65 28 ? -1.2 0.3 0.14 2.3e+03 4 23 .. 1476 1508 .. 1476 1510 .. 0.79 29 ! 14.3 10.6 2e-06 0.032 18 50 .] 1689 1721 .. 1674 1721 .. 0.87 30 ! 25.9 3.7 4.9e-10 7.9e-06 17 50 .] 1721 1754 .. 1719 1754 .. 0.94 31 ! 60.5 7.3 7.2e-21 1.2e-16 1 50 [] 1759 1808 .. 1759 1808 .. 0.99 32 ? 0.3 0.1 0.046 7.5e+02 28 39 .. 1807 1818 .. 1806 1818 .. 0.87 33 ! 14.7 6.2 1.5e-06 0.025 20 50 .] 1831 1862 .. 1829 1862 .. 0.90 34 ! 2.8 1.5 0.0079 1.3e+02 27 46 .. 1860 1881 .. 1858 1883 .. 0.73 35 ? -0.9 0.1 0.11 1.9e+03 29 38 .. 1885 1894 .. 1885 1907 .. 0.74 36 ! 20.4 11.9 2.4e-08 0.0004 1 38 [. 1912 1971 .. 1912 1974 .. 0.97 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 3.7e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+r+pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T324545_3 4 GEAPAFRQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 51 89*********.*********************************9887 PP == domain 2 score: 0.9 bits; conditional E-value: 0.029 DUF4705 10 pLqapaslqasglsrpsaq 28 +Lq + +l+++ l +p ++ T324545_3 64 RLQ-ARLLPHNNLLWPNSC 81 678.9**********9998 PP == domain 3 score: -0.4 bits; conditional E-value: 0.078 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp as++p q sl a s+ s +L+++s T324545_3 99 PGPPSASQQPQQSNYSLTAATESQVSPCLTASS 131 89999*****99888999999999999999987 PP == domain 4 score: 16.4 bits; conditional E-value: 4.2e-07 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa ++ + glsr s++L + saGp+ p++gLs T324545_3 135 AFASRWPPQAmnlpasqaaaasqwsl*AQVMLKDGLSRHSSCLLAGSAGPNSPKVGLS 192 88******************************************************97 PP == domain 5 score: 11.0 bits; conditional E-value: 2.1e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpk 37 + +l+ ++ rps++L +A++G+ T324545_3 226 AKLLPFGSFYRPSSCLAIAFVGQD 249 6789999***************95 PP == domain 6 score: 24.9 bits; conditional E-value: 1e-09 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++ ++s + ++ ++Lp AsaG+++p++ L rPssCL T324545_3 269 PKTSSSQPVQAKLFLPTASAGQNRPEVTLCRPSSCL 304 55566667799************************9 PP == domain 7 score: 18.0 bits; conditional E-value: 1.4e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T324545_3 339 LQTKLSLPVASTGQNCPQVSLSRANS 364 578899*****************976 PP == domain 8 score: 24.1 bits; conditional E-value: 1.8e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T324545_3 366 LPVASAGQNRPQVSLFTPSSCL 387 8********************9 PP == domain 9 score: 11.4 bits; conditional E-value: 1.6e-05 DUF4705 31 vAsaGpklppagLsrPs 47 vAs+G klp++gLsrPs T324545_3 389 VASPGAKLPQVGLSRPS 405 8***************7 PP == domain 10 score: 4.7 bits; conditional E-value: 0.002 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ ++ p lp T324545_3 404 PSLLLPKGMYRPSLCLTADTPRPALP 429 678999************99999887 PP == domain 11 score: 10.0 bits; conditional E-value: 4.4e-05 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ q +++l++ gl +p ++L T324545_3 439 APAFRQLVQ-AQLLPHGGLFSPNSCLL 464 9*****888.***************95 PP == domain 12 score: 2.0 bits; conditional E-value: 0.014 DUF4705 3 pAPasrrpLqapaslq 18 +APas++p +++++ T324545_3 470 SAPASHWPVE-AQLMP 484 6*******99.88887 PP == domain 13 score: 16.3 bits; conditional E-value: 4.7e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa++rpLq + l++sglsrp ++ p ++ + ++L PssCL T324545_3 489 TGPAPACQRPLQ-ARPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 537 8***********.7777777777777776665444444556677777776 PP == domain 14 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++L +AsaGp ++++gLsr+ss+L T324545_3 543 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLSAASAGPDCRQVGLSRASSSL 600 678888888888888888852.44311567899************************98 PP == domain 15 score: 18.9 bits; conditional E-value: 7.4e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssCL 50 lsr+s+ Lp+ saGp++p++gL rPss L T324545_3 593 LSRASSSLPAPSAGPSRPQVGLPRPSSGL 621 69*************************87 PP == domain 16 score: 16.1 bits; conditional E-value: 5.6e-07 DUF4705 15 aslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 +s +++gl rps++L +A +G k p ++LsrPss+ T324545_3 607 PSRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 641 56799***************************975 PP == domain 17 score: 4.7 bits; conditional E-value: 0.0019 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++LpvAs Gp pp gL rPs +L T324545_3 630 VPRVSLSRPSsSCLPVASFGPAQlmppgglpgllPPEGLHRPSLSL 675 57899***9637*********9999888888888888888888765 PP == domain 18 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l++ gl+rps+ L++ s+ p T324545_3 660 PGLLPPEGLHRPSLSLTADSPRP 682 678**************988766 PP == domain 19 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gls p+ + +s++ + pp++Ls Pss+ T324545_3 704 GPAPACQWPLQAhgahssqrpf*AQFFPSGGLSGPR---TSSSRPLQThlqPPGVLSGPSSS 762 9********************************998...56788877778899999999997 PP == domain 20 score: 2.6 bits; conditional E-value: 0.009 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p+g T324545_3 766 RLQArllppnnlfglsacpspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVG 830 55556666666666666666666666666666665577779********************5554 PP == domain 21 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 s +++++aqLp+A++Gp+l+pa+L+ P++CL T324545_3 864 SPFGSTPAQLPAAFVGPELSPAKLFGPTYCL 894 569***************************9 PP == domain 22 score: 12.3 bits; conditional E-value: 8.3e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq ++l+++glsrps+++ + +G ++ p +gL+ P sCL T324545_3 899 TGPALAVEQPLQ-VPLLPPRGLSRPSSRPHGSLPGTSPclppsspraaqllPHGGLLMPNSCL 960 8***********.****************9999999999999999999999***********8 PP == domain 23 score: -19.2 bits; conditional E-value: 1 DUF4705 38 l 38 l T324545_3 1033 L 1033 2 PP == domain 24 score: 13.2 bits; conditional E-value: 4.5e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsr Lp++s+Gp lpp+ srP +CL T324545_3 1227 PQVGLSRLTCSLPASSPGPALPPGCVSRPDCCL 1259 789*****************************9 PP == domain 25 score: 15.7 bits; conditional E-value: 7.3e-07 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPssCL 50 l +++a L +A +Gp++p++g srP CL T324545_3 1264 LDSAPAHLLAALVGPSRPEVGVSRP--CL 1290 5699*********************..97 PP == domain 26 score: -0.5 bits; conditional E-value: 0.082 DUF4705 5 PasrrpLqa............paslqasglsrps 26 Pas++ L a p+ l +s+++ p T324545_3 1291 PASKQALLAqllpssqppl*aPNFLEPSSSGPPT 1324 8889988877777777777778888888777775 PP == domain 27 score: 1.2 bits; conditional E-value: 0.025 DUF4705 2 gpAPasrrpLqapaslqa.sglsrpsaqLpvAsaGpklppagL 43 gp asr+p q a l+ ++l rp+++Lp As+Gp l p + T324545_3 1321 GPPTASRWPVQ--AQLWL*NSLCRPRSCLPGASPGPALAPTAA 1361 7778*******..667767777777777777777777744333 PP == domain 28 score: -1.2 bits; conditional E-value: 0.14 DUF4705 4 APasrrpLqa.............paslqasgls 23 A as+rpL p++l +g s T324545_3 1476 ALASHRPLPR*ersa*apcltlaPPTLTEVGVS 1508 8899***97788888888888888888877765 PP == domain 29 score: 14.3 bits; conditional E-value: 2e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 ++++lsrp Lp++s+Gp lpp+ +srP s L T324545_3 1689 PQVSLSRPTCSLPASSPGPALPPGCISRPDSGL 1721 789***************************987 PP == domain 30 score: 25.9 bits; conditional E-value: 4.9e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ +l +++aqLpvA +Gp+lp+a+L rP+s L T324545_3 1721 LPTMSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1754 78899***************************87 PP == domain 31 score: 60.5 bits; conditional E-value: 7.2e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+rr+Lqap+ l+++g+srps++Lp++saG ++ ++gLsrPss+L T324545_3 1759 PGSAPALRRHLQAPNGLRSVGSSRPSLGLPATSAGLNRAEVGLSRPSSSL 1808 9***********************************************98 PP == domain 32 score: 0.3 bits; conditional E-value: 0.046 DUF4705 28 qLpvAsaGpklp 39 Lp+AsaG ++p T324545_3 1807 SLPAASAGLSRP 1818 69******9987 PP == domain 33 score: 14.7 bits; conditional E-value: 1.5e-06 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324545_3 1831 VGLPGPSSVLSAASPGAKLPRVSLSRPSfSCL 1862 67888**********************96676 PP == domain 34 score: 2.8 bits; conditional E-value: 0.0079 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324545_3 1860 SCLPVASFGPAQlvALSGLPRP 1881 8*********874544455555 PP == domain 35 score: -0.9 bits; conditional E-value: 0.11 DUF4705 29 LpvAsaGpkl 38 L vAs Gp+l T324545_3 1885 LLVASSGPEL 1894 7899999998 PP == domain 36 score: 20.4 bits; conditional E-value: 2.4e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpkl 38 +gpA as++ L+a +++l+asgl rps++L+ A++Gp++ T324545_3 1912 TGPASASQWTLHAqlalaslrppqskapafrplwqSQLLPASGLFRPSSFLTTAFPGPVF 1971 8*********************************************************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 8516.15 // Query: T287890_1 [L=3274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-16 60.8 1.9 2e-16 60.1 1.9 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 1.5e-16 60.1 13.9 1.6e-08 33.7 11.9 2.9 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.1 1.9 2.4e-20 2e-16 7 100 .. 1312 1409 .. 1307 1419 .. 0.92 Alignments for each domain: == domain 1 score: 60.1 bits; conditional E-value: 2.4e-20 S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 7 gsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +++ pisl+++ +k+lnk++a+r++++++kl++++q+gf pg + + ++ ++++++ +++ k+++++++D +kaF++++ ++ l++l++++++ + T287890_1 1312 ENFSPISLMNIYVKILNKILANRIQQHIKKLIHHDQVGFIPGMQAWCNIcksiNVIHHIRRSNDKNHMIISIDAEKAFNKIQQHFMLKTLNKLGINAM 1409 47889*************************************9999999***9999999999*******************************99844 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 11.9 1.9e-12 1.6e-08 8 163 .. 434 561 .. 429 578 .. 0.73 2 ! 24.2 0.0 1.5e-09 1.3e-05 288 321 .. 681 714 .. 678 715 .. 0.86 Alignments for each domain: == domain 1 score: 33.7 bits; conditional E-value: 1.9e-12 .XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............ CS Transposase_22 8 tnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd...fykelkelieskakele.alkekeentekqlkiikekqentskq 98 rk +n+k +++s+P+ke +ssPa e++++ ++f++l + +++++ +++elke + ++ e + k ++e + T287890_1 434 QSRKAENAKNQNASSPPKEYNSSPAR--EQNWMVNEFDKLTEVGYRRSvitNFSELKEHVLIHSEEAKnLDKSLDEWLTRITS------------ 514 489**********************9..*******************933345555555544444444333444443333222............ PP ......XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 99 vmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid 163 v + ++l+ lk v+el + s++s+ d+ eer+s +ed+i+ei+ T287890_1 515 VEKSLNDLMKLKNTVQELCEAHT------------------SFNSQFDQAEERISVIEDQINEIK 561 33344589999999999987776..................9*********************97 PP == domain 2 score: 24.2 bits; conditional E-value: 1.5e-09 -HHHHHHHHHHHHHHHHHHHTT---EEETTTEEE CS Transposase_22 288 saetlkarrewtdviqilkekkfqPrllyPakls 321 s e + ++ +++++ilke++fqPr++yPakl+ T287890_1 681 SQEKPEIQKRGGPIFNILKENNFQPRISYPAKLA 714 666667778889********************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.77 # Mc/sec: 12164.10 // Query: T287890_2 [L=3273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-16 58.4 0.1 1.1e-15 57.6 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.6 0.1 6.9e-20 1.1e-15 102 211 .. 1413 1534 .. 1406 1555 .. 0.90 Alignments for each domain: == domain 1 score: 57.6 bits; conditional E-value: 6.9e-20 ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHH.HHHH CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelle.avee 189 +++i++++ + ++++ +ng++ e ++ k+g++qG++lSPllfn+ ++ l r +r++ k v+l+++aDD++++ +++ + l +++ T287890_2 1413 LKIIRAIYDKHTANIILNGQKQEAFPLKTGTRQGCPLSPLLFNIGLEVLARAIRQEKaiqdiqigrKVVKLSLFADDMIVYLENPIVSDPNLL*LISN 1510 689*****************99*********************************99***************************999999999999** PP HHHHTT--BEGGG-EEE....... CS RVT_1 190 wlkesglkinpeKtklvlfsg..k 211 + k +g+ki+ +K++++l+++ + T287890_2 1511 FSKVAGYKISVQKSQAFLYTNnrQ 1534 *****************9833332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 791 (0.0485098); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.78 # Mc/sec: 12004.48 // Query: T287890_3 [L=3273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-56 190.8 4.3 5.1e-56 190.0 4.3 1.2 1 Transposase_22 L1 transposable element 2.3e-08 33.3 0.8 4.5e-08 32.4 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) 3.5e-08 33.5 0.0 5.9e-08 32.8 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.1e-06 27.5 0.8 4.1e-06 26.5 0.8 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 190.0 4.3 1.2e-59 5.1e-56 186 360 .. 579 754 .. 575 755 .. 0.92 Alignments for each domain: == domain 1 score: 190.0 bits; conditional E-value: 1.2e-59 HHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE CS Transposase_22 186 tvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP 280 vkrPnl liGv+es+ e+++kl n++++ii+enf nl+++a++ +q i+r P+r++s+ra++rhiivr++kv++k+k+l+a+rekG vt k P T287890_3 579 NVKRPNLCLIGVPESDGENGTKLVNTVQDIIQENFSNLARQAKIRLQKIQRPPQRYSSRRATPRHIIVRFAKVEMKEKMLRAAREKGWVTHKAMP 673 69********************************************************************************************* PP EEEEE---HHHHHHHHHHHHHHHH.HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSS CS Transposase_22 281 irltadlsaetlkarrewtdviqi.lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdr 360 rltad+s et + +++ + k+ q ++ + s+i +G ik f dk++ rd+++trPa++ llk+ ++er++ T287890_3 674 NRLTADVSGETRNPEERGANIQHS*RKQFSTQNIIS--CQTSFIREGVIKSFTDKKMRRDFVTTRPAIQGLLKDvlNMERNNW 754 ***********8877666655544556666666665..789*********************************99****996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.8 1.1e-11 4.5e-08 1 19 [] 2358 2376 .. 2358 2376 .. 0.98 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 1.1e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T287890_3 2358 SFAGTWMKLETIILSKLSQ 2376 7*****************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.0 1.4e-11 5.9e-08 1 113 [] 797 1018 .. 797 1018 .. 0.87 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 1.4e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH....EEEEEEESSSTTSSEEEEEECSEEEEE............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla....dadaskfgtgkgqggvavlsrfpltsl............. 77 lt Nvng ++ + ++ +l +++k++d+ v +qE++ ++r +l+ + ++ + +++k++ gva+l++ + + + T287890_3 797 LTLNVNG----LNATIKRHRLVKWIKSQDPSVCYIQETHLTCKDRHTLKIkgwrKIYQANGKQKKKKAGVAILVSGKTDFKptkikrdkeghyi 886 699****....7788999*********************999999888889**97778888888999999999999996666788999999999 PP .........................................EEEEEE-SS............................................ CS .........................................xxxxxxxxx............................................ RF Exo_endo_phos 78 .........................................vivlGDfNa............................................ 86 +++GDfN+ T287890_3 887 mvkgpirqeeltilniyasntgaprfiqqvlrdlqrdldshTVIMGDFNTplsildrstrqkvnkdiqdlnsaldqvdlidiyrtlhpksteyi 980 999999999*****************************************99999999999999999999999999988888888888888888 PP ..........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ..........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ..........rlDrilaskelatersgvldepla.SDH 113 +D+++ +k+l + ++++ + SDH T287890_3 981 ffsaphctysKIDHVIGNKTLLSKYKRTGITANClSDH 1018 88888888888899999886666666666655558998 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.8 1e-09 4.1e-06 2 118 .. 898 1021 .. 897 1022 .. 0.80 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 1e-09 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll.nllkeg.ptfeseng... 87 +i ++Y +++ + + +++ l++l ++l+s +++i+GDfN + + +++++ ++ ++L + l++ +l + +l+ + ++++ ++ T287890_3 898 TILNIYASNTG-APRFIQQVLRDLQRDLDS-HTVIMGDFNTPLSILDRSTRQKvNKDIQDLNSALDQVDLIDIyRTLHPKsTEYIFFSAphc 987 78999999999.788888888888888886.8**************99887779999************98444333333344433333446 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ +++l+ + + + +++SDH++i T287890_3 988 tYSKIDHVIGNKTLLSKykRTGITANCLSDHSAI 1021 67****************9777779******998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.42u 0.38s 00:00:01.79 Elapsed: 00:00:00.91 # Mc/sec: 10289.56 // Query: T004098_1 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1266 (0.0776401); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.37s 00:00:02.02 Elapsed: 00:00:00.82 # Mc/sec: 6545.02 // Query: T004098_2 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.74 # Mc/sec: 7248.72 // Query: T004098_3 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 8381.34 // Query: T185710_1 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.78 # Mc/sec: 10750.12 // Query: T185710_2 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 11331.21 // Query: T185710_3 [L=2930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.67 # Mc/sec: 12510.79 // Query: T143306_1 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.75 # Mc/sec: 7480.12 // Query: T143306_2 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 8130.56 // Query: T143306_3 [L=1960] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1960 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 7787.81 // Query: T132266_1 [L=906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 4799.84 // Query: T132266_2 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 5076.57 // Query: T132266_3 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 4388.22 // Query: T099947_1 [L=5610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.40s 00:00:02.27 Elapsed: 00:00:00.79 # Mc/sec: 20315.51 // Query: T099947_2 [L=5610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.39s 00:00:02.24 Elapsed: 00:00:00.81 # Mc/sec: 19813.90 // Query: T099947_3 [L=5609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.41s 00:00:02.33 Elapsed: 00:00:00.86 # Mc/sec: 18658.60 // Query: T265314_1 [L=2559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 10609.95 // Query: T265314_2 [L=2558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-08 33.6 0.8 3.5e-08 32.7 0.8 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.8 2.1e-12 3.5e-08 1 19 [] 575 593 .. 575 593 .. 0.98 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 2.1e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE+IILS+ sQ T265314_2 575 SFAGTWMKLETIILSKLSQ 593 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 10024.66 // Query: T265314_3 [L=2558] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2558 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.73 # Mc/sec: 10024.66 // Query: T150379_1 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.67 # Mc/sec: 2903.53 // Query: T150379_2 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 3407.90 // Query: T150379_3 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 3665.10 // Query: T319431_1 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 8943.20 // Query: T319431_2 [L=2157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 10116.08 // Query: T319431_3 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-61 208.2 14.5 2e-61 207.8 14.5 1.2 1 Transposase_22 L1 transposable element 0.0023 17.2 9.3 0.0036 16.6 9.3 1.2 1 GAS Growth-arrest specific micro-tubule binding 0.0097 14.9 10.3 0.016 14.2 10.3 1.2 1 Atg14 Vacuolar sorting 38 and autophagy-related sub ------ inclusion threshold ------ 0.016 15.5 4.7 0.028 14.8 4.7 1.3 1 Spectrin Spectrin repeat 0.019 15.0 7.5 0.032 14.3 7.5 1.3 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.035 14.0 8.3 0.057 13.4 8.3 1.2 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.044 12.6 13.1 0.065 12.0 13.1 1.1 1 DUF812 Protein of unknown function (DUF812) 0.044 13.5 3.5 0.072 12.8 3.5 1.3 1 Sec34 Sec34-like family 0.084 13.3 5.6 0.17 12.3 5.6 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.089 12.8 2.8 0.18 11.9 2.8 1.5 1 Med2 Mediator complex subunit 2 0.1 12.7 6.9 0.093 12.9 5.2 1.7 1 KLRAQ Predicted coiled-coil domain-containing prote 0.11 11.8 11.0 0.16 11.2 11.0 1.1 1 APG6 Autophagy protein Apg6 0.19 9.9 5.3 0.28 9.4 5.3 1.1 1 DUF4613 Domain of unknown function (DUF4613) 0.21 11.3 8.5 0.34 10.6 8.5 1.2 1 Mnd1 Mnd1 family 0.21 11.5 2.4 0.35 10.7 2.4 1.3 1 DUF1664 Protein of unknown function (DUF1664) 0.24 10.1 9.5 0.38 9.4 9.5 1.2 1 Spc7 Spc7 kinetochore protein 0.27 10.9 12.1 0.11 12.1 6.5 2.0 2 TBPIP Tat binding protein 1(TBP-1)-interacting prot 0.5 9.8 4.8 0.83 9.1 4.8 1.2 1 PspA_IM30 PspA/IM30 family 0.68 10.3 6.7 4.3 7.7 6.7 2.0 1 DUF16 Protein of unknown function DUF16 0.68 9.8 13.1 1.2 9.0 13.1 1.2 1 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein C 0.71 9.8 8.1 1.2 9.1 8.1 1.2 1 Mod_r Modifier of rudimentary (Mod(r)) protein 0.85 9.6 14.1 2.3 8.2 14.0 1.6 1 ATG16 Autophagy protein 16 (ATG16) 1.4 9.0 14.1 2.1 8.5 14.1 1.2 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1.9 8.2 8.7 3.1 7.5 8.7 1.2 1 DUF724 Protein of unknown function (DUF724) 2 8.4 6.4 2.9 7.8 6.4 1.2 1 Nup54 Nucleoporin complex subunit 54 2.1 9.0 4.6 4.4 7.9 4.6 1.5 1 Occludin_ELL Occludin homology domain 2.4 6.5 7.6 3.4 6.0 7.6 1.1 1 DUF342 Protein of unknown function (DUF342) 3.6 8.0 5.6 8.2 6.8 5.6 1.6 1 UPF0449 Uncharacterised protein family UPF0449 4 7.3 7.5 1.2 9.0 3.9 1.7 2 OmpH Outer membrane protein (OmpH-like) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 207.8 14.5 3.5e-64 2e-61 1 210 [. 1981 2156 .] 1981 2156 .] 0.98 Alignments for each domain: == domain 1 score: 207.8 bits; conditional E-value: 3.5e-64 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk++++s+P+ke sssPa e+++ ++df+elr+e++++++y+el+e+i++k+ke+e ++k++ee ntek+lk T319431_3 1981 MGKKQ---SRKTGNSKTQSASPPPKELSSSPAM--EQSWTENDFDELREEGFRRSNYSELREDIQTKGKEVEnFEKNLEEcitritNTEKCLK 2068 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqs 179 el+elktk++el++e++ sl+sr+d+leervsa+edei+e++re+k+rek ++++eqs T319431_3 2069 ------------------ELMELKTKAQELREECR------------------SLRSRCDQLEERVSAMEDEINEMKREGKFREKSIRRNEQS 2125 ..................9****************..................**************************************** PP HHHHHHHHTTTEEEEES----TT--HHHHHH CS Transposase_22 180 lqviqdtvkrPnlrliGvdesedeqlkklen 210 lq+i+d+vkrPnlrliGv+es+ e++ klen T319431_3 2126 LQEIWDYVKRPNLRLIGVPESDRENGIKLEN 2156 ****************************998 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 9.3 6.4e-06 0.0036 48 128 .. 2031 2111 .. 2019 2125 .. 0.83 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 6.4e-06 GAS 48 llseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelykk 128 + se+ ++ + +++++ ek++ee +++n ek ++l++lk++ +el +e ++l+ ++l++r++++e+e +e++++ T319431_3 2031 NYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKRE 2111 4455555555566666666666666666788999*******************************************9874 PP >> Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 10.3 2.8e-05 0.016 18 118 .. 2029 2126 .. 2027 2134 .. 0.90 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.8e-05 Atg14 18 rnrlyekrerlaklksekeslkkkieealelkeeaeqledkiknkkakleeiksliaelrerlqelkdklsqlkkeieekkkklaklsdklkkrrsdl 115 r+ + e+re+++ +e e ++k +ee +++ +++e+ ++++ +k+k++e++ + ++lr+r+ +l++++s +ei+e k++ + + +++ +r+++ T319431_3 2029 RSNYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKSI-RRNEQ- 2124 567899**************************************************************************99888777777.34433. PP Atg14 116 esl 118 sl T319431_3 2125 -SL 2126 .44 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 4.7 5e-05 0.028 2 94 .. 2045 2135 .. 2044 2138 .. 0.95 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 5e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++q+l ++++ l+ ++ +erv a ++ +++ eg++ ++ i+ + l+e W+ +k+ T319431_3 2045 EVENFEKNLEECITRITNTEKCL--KELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKSIRRNEQSLQEIWDYVKR 2135 6789*******************..77778999*******************************************************99875 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 7.5 5.6e-05 0.032 9 100 .. 2017 2108 .. 2012 2111 .. 0.96 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 5.6e-05 H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +++++++e +R +++++ +++ ++ ++ ++ lee+ ++ + k +++++ k +a+el++e ++l + ++le++++++e+e++++ T319431_3 2017 NDFDELREEGFRRSNYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEM 2108 7999******9******************************************************************************986 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 8.3 0.0001 0.057 22 100 .. 2030 2111 .. 2022 2129 .. 0.85 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 0.0001 TPR_MLP1_2 22 aklqklqedlekqaeiakeaqqkYer...elvkhaedikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkee 100 ++ ++l+ed++++ +++++ +++ e+ +++ ++ +kel +l+++++el++e ++l+++ +++++ +++ e++++e k e T319431_3 2030 SNYSELREDIQTKGKEVENFEKNLEEcitRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKRE 2111 67789********************8333566788899**************************************999976 PP >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 13.1 0.00012 0.065 247 393 .. 1971 2128 .. 1951 2137 .. 0.62 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.00012 DUF812 247 kkeklqkrlaeqlrkaalsseeaeksaskskkdlaellsefsekntseselskgsrfthaeklqfakeelakkkteteeelrkkre............ 332 ++ k+ k + +++ + ++++++sas+ k+l+++ ++ ++++ + +++ f++++ ++ ++ ++k ++ e+ +k+ e T319431_3 1971 QRPKVDKTTKMGKKQSRKTGNSKTQSASPPPKELSSSPAMEQSWTENDFDELREEGFRRSNYSELREDI--QTKGKEVENFEKNLEecitritntekc 2066 223333333322333322333333333333333333222222223444445566666666666666661..234444444444444555555566677 PP DUF812 333 .eeleelqekleeleskieeleeelkklessikqieeeleeekeeneelekelklkkktlel 393 +el el++k +el+++ +l++ ++le +++ +e+e++e+k+e + +ek+++ +++ l+ T319431_3 2067 lKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKSIRRNEQSLQE 2128 7*****************************************************99998875 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 3.5 0.00013 0.072 3 62 .. 2047 2106 .. 2045 2113 .. 0.88 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00013 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrleelae 62 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + +e+ + T319431_3 2047 ENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEIN 2106 688999******************************************877666665444 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 5.6 0.00031 0.17 3 95 .. 2032 2133 .. 2004 2135 .. 0.75 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00031 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtsss....tseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrr 85 + e +e++q + +++e+ +++ +++ ++ + + el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r + T319431_3 2032 YSELREDIQTKGKEVENFEKNLeeciTRITNT---EkclkELMELKTKAQELREECRSLRSRCDQLEERVSAMEDeineMKREGKFREKSIRRNE 2123 56778888877777777777762112333333...134448999999***********************9887744223344777788888888 PP Syntaxin-6_N 86 afveevreev 95 + ++e+ + v T319431_3 2124 QSLQEIWDYV 2133 7777776655 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 2.8 0.00031 0.18 45 95 .. 2040 2090 .. 2010 2125 .. 0.87 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00031 Med2 45 ksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 ++ +++++F++ L + ++++++++++++l+e k++ +e++e ++ r r T319431_3 2040 QTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAQELREECRSLRSR 2090 44567899*******************************999977666655 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 5.2 0.00017 0.093 33 90 .. 2071 2124 .. 2053 2131 .. 0.74 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 0.00017 KLRAQ 33 eelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkke 90 elk+k+q+lr +E sL r +qLe rv+++ +e++e +++ +k ++ks ++++ T319431_3 2071 MELKTKAQELR---EECRSLRSRCDQLEERVSAMEDEINEMKRE-GKFREKSIRRNEQ 2124 35777777777...6999*********************98766.7777555554444 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 11.0 0.00029 0.16 26 112 .. 2030 2113 .. 2014 2137 .. 0.46 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00029 APG6 26 dayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrernalklela 112 +y+e+ ++++++ k+ e + +++le+ + ++ ++e+ l+el el+++ +el+ee ++l++ +++lee+ +++ +e n++k+e + T319431_3 2030 SNYSELREDIQTKGKEVE--NFEKNLEECITRIT-NTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGK 2113 555555555555543333..11122222222222.3333444444444444444444444444444444444444444444444332 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 5.3 0.0005 0.28 500 597 .. 1961 2079 .. 1951 2089 .. 0.69 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.0005 DUF4613 500 splssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkknlekekeaeqlskeler 573 ++++sv + +++ + ++++++ +++ +++ +s + + +++ ++ ++sp +e +++ +k ke+e+++k+le+ T319431_3 1961 TRNPSVHHHHQRPKVDKTTKMGKKQSRKTGNSKTQS---ASPPPKELSSSPAMEqswtendfdelreegfrrsnyselREDIQTKGKEVENFEKNLEE 2055 444555554444466666666666555555555543...3333333333333333457777888888888888888878899999************* PP DUF4613 574 lsekltevqqsLseltdllqngkk 597 ++++t+ +++L el++l+++ ++ T319431_3 2056 CITRITNTEKCLKELMELKTKAQE 2079 *****************9988765 PP >> Mnd1 Mnd1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 8.5 0.0006 0.34 67 149 .. 2028 2110 .. 2000 2128 .. 0.89 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0006 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...S-HHHHHHHHHHHHHHHH CS Mnd1 67 rekeleklkkeveelkkkikeleekleaekeereeseereelleelqeleeekkelkeeleklke...ldpekleklkeelekake 149 r++++++l+++++ k++++ e++le+ ++ +++ e+ l+el el+++ +el+ee+ +l++ +e+++ +++e++++k+ T319431_3 2028 RRSNYSELREDIQTKGKEVENFEKNLEECITRITNT---EKCLKELMELKTKAQELREECRSLRSrcdQLEERVSAMEDEINEMKR 2110 677889999***********************9999...99********************9999854456888888888888776 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 2.4 0.00062 0.35 65 122 .. 2043 2103 .. 2030 2111 .. 0.66 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00062 DUF1664 65 sqridrvdkkldeqkeiskeik...eevtevredlseikedvesvkeavegLeskleeiee 122 +++++ +k+l+e++ +++++ +e++e++ + +e++e+ +s+++ +Le++++ +e+ T319431_3 2043 GKEVENFEKNLEECITRITNTEkclKELMELKTKAQELREECRSLRSRCDQLEERVSAMED 2103 4567777777777776665555222466677777777777777777777777777777765 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 9.5 0.00068 0.38 166 248 .. 2033 2117 .. 2005 2132 .. 0.45 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00068 Spc7 166 dellpeleeekaelekeleklqeaaeelesid..keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkselee 248 +el ++++++ +e+e+ ++l+e +++ + +eL el+ + +el ee ++++ + ++l+e++++ e++i+e+k + + e+ T319431_3 2033 SELREDIQTKGKEVENFEKNLEECITRITNTEkcLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREK 2117 3333333333333333333333333333332212233333333333333333333333333333333333333333333333333 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.7 0.41 2.3e+02 111 139 .. 2032 2060 .. 2015 2069 .. 0.77 2 ? 12.1 6.5 0.0002 0.11 72 137 .. 2068 2131 .. 2061 2137 .. 0.92 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.41 TBPIP 111 teelleeiqelkkeveeieekLeslkesn 139 el+e iq+ keve+ e+ Le+ + T319431_3 2032 YSELREDIQTKGKEVENFEKNLEECITRI 2060 46899999999999999999988765544 PP == domain 2 score: 12.1 bits; conditional E-value: 0.0002 TBPIP 72 eelnkldaeieelreevqelkqeiselekelkkLeseltteelleeiqelkkeveeieekLeslke 137 +el++l+ + +elree+++l + + +le+ ++e e +e++ e + ++k+++++e+ L+++ + T319431_3 2068 KELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEI--NEMKREGKFREKSIRRNEQSLQEIWD 2131 5899*******************************999..9******************9999865 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 4.8 0.0015 0.83 87 135 .. 2064 2112 .. 2031 2129 .. 0.75 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0015 PspA_IM30 87 realaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakk 135 ++ l+e+ +l+ +a++l+++ +rs +ql++ ++a e i+e+k++ T319431_3 2064 EKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREG 2112 6788999999999999999999999999999999999999999999875 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 6.7 0.0077 4.3 32 99 .. 2073 2140 .. 2002 2143 .. 0.76 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0077 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 k++ +++ ++ ++l + ++le+ v++ +++i+e+k e k +++++ + +++l+ i + +++ n Rl T319431_3 2073 LKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKSIRRNEQSLQEIWDYVKRPNLRL 2140 23344444555559999**************************************9999888877776 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 13.1 0.0021 1.2 17 116 .. 2030 2125 .. 2019 2137 .. 0.71 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.0021 CENP-F_leu_zip 17 rkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenl 109 ++ + L++ ++ +e+e+ e+n+e+ i+ + + +e++el+++ +el+ + +lrs ++Le+ + + ++++e+++ e+ T319431_3 2030 SNYSELREDIQTKGKEVENFEKNLEECITRITNTEK----CLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKS 2118 455678888888889999999999999876655433....33445566666666777777777777777777777777777777777777777 PP CENP-F_leu_zip 110 leekEqe 116 ++++Eq T319431_3 2119 IRRNEQS 2125 7777776 PP >> Mod_r Modifier of rudimentary (Mod(r)) protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 8.1 0.0021 1.2 18 97 .. 2035 2120 .. 2028 2129 .. 0.56 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0021 Mod_r 18 lealvktl.pevkqlkeekeellaenesla...eknlslepeleelrselqekleelkelekefeekeqeldell..ekfspdall 97 l + ++t +ev++ ++++ee+++ + ++ ++ ++l+++ +elr+e+ + ++ +++le+++ + e e +e+ kf +++++ T319431_3 2035 LREDIQTKgKEVENFEKNLEECITRITNTEkclKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKreGKFREKSIR 2120 44445555577888888888887665444211155555555555555555555555555555555555555555555555554444 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 14.0 0.004 2.3 60 153 .. 2008 2109 .. 1956 2136 .. 0.61 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.004 ATG16 60 sakeelasssq..............snskqsakiasleqklaqlreelaelyksrgelaqrllelne...elqkleeklkedeerlaeleaeraalee 140 + + ++ ++++ ++l + +++ +e+++ k e +r++++++ el +l++k++e e+ ++l++++ +lee T319431_3 2008 P---------AmeqswtendfdelrEEGFRRSNYSELREDIQTKGKEVENFEKNLEECITRITNTEKclkELMELKTKAQELREECRSLRSRCDQLEE 2096 1.........1223333344555665666777777777777777777777777777777777777752223444556666667777777777777777 PP ATG16 141 klkdreeelreke 153 +++ e+e++e + T319431_3 2097 RVSAMEDEINEMK 2109 7777777777654 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 14.1 0.0037 2.1 39 153 .. 2011 2135 .. 2009 2137 .. 0.73 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0037 Jnk-SapK_ap_N 39 eslasrneeeeaeleelreel.eqLetekerekelrkraeeeleei......edqweeerkelqekveqleeenrelelkaknaadqlsrleek 125 e+ ++n+ e ++e r+ + ++L+++ + + ++ +++e++lee +++ +e el++k ++l+ee+r l +++++++++s++e++ T319431_3 2011 EQSWTENDFDELREEGFRRSNySELREDIQTKGKEVENFEKNLEECitritnTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDE 2104 66666666666666666655426788888888888888887777761111112344456668888999************************** PP Jnk-SapK_ap_N 126 eaelkkeysklhe...retellkklkelver 153 +e+k+e + ++ r ++ l++ ++v+r T319431_3 2105 INEMKREGKFREKsirRNEQSLQEIWDYVKR 2135 ****999988877777777777777777765 PP >> DUF724 Protein of unknown function (DUF724) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 8.7 0.0055 3.1 99 184 .. 2038 2129 .. 2013 2134 .. 0.63 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0055 DUF724 99 slkdeqtklleelkklekkieeeesekskleeeldelekkilelerqlallk.......ekkeaadkeiarlkseaekleeeledveleFeav 184 ++++ +++++ +k+le+ i++ ++ +k+ +el el+ k +el ++ +l+ e+ +a++ ei ++k e + e+++++ e++ +++ T319431_3 2038 DIQTKGKEVENFEKNLEECITRITN-TEKCLKELMELKTKAQELREECRSLRsrcdqleERVSAMEDEINEMKREGKFREKSIRRNEQSLQEI 2129 2344444444455555555554444.4445556667888888888888888877777766677777788888888888888887777777765 PP >> Nup54 Nucleoporin complex subunit 54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 6.4 0.0052 2.9 32 137 .. 2033 2130 .. 2030 2133 .. 0.88 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0052 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS-HHH. CS Nup54 32 edLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakrrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlndpaql 129 ++L++ ++ kev+++++ l+e +r++++e + +++l ++k++ +el + + +l ++ + l+ r +a++ e +e++++ + e+++++++q T319431_3 2033 SELREDIQTKGKEVENFEKNLEECITRITNTE-----KCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFREKSIRRNEQ- 2124 67888899999*********************.....9*************************************9999999988877888886443. PP HHHHHHHH CS Nup54 130 kgrvnelw 137 ++e+w T319431_3 2125 --SLQEIW 2130 ..666666 PP >> Occludin_ELL Occludin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 4.6 0.0077 4.4 23 98 .. 2031 2107 .. 2027 2122 .. 0.84 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0077 Occludin_ELL 23 eYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKklike 98 +Y+el +++++ k+++++e++l+e ++ ++++k +e l e+k + + +e ++ + rc++L+e+ s + i+e T319431_3 2031 NYSELREDIQTKGKEVENFEKNLEECITRITNTEKCLKE-LMELKTKAQelREECRSLRSRCDQLEERVSAMEDEINE 2107 699999999999999999999999999999999999999.66666666558889999999999999998888777776 PP >> DUF342 Protein of unknown function (DUF342) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 7.6 0.0061 3.4 336 411 .. 2043 2115 .. 2022 2131 .. 0.53 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0061 DUF342 336 keklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411 ++++++e++lee+ ++++ +k +k+l +lk + +e +e+ +l+ +l+e+++++e+e++e+k e + + T319431_3 2043 GKEVENFEKNLEECITRITNTEKCLKELMELKTKA---QELREECRSLRSRCDQLEERVSAMEDEINEMKREGKFR 2115 23334444444444444444444455555543333...35555555555555555555555555555555555555 PP >> UPF0449 Uncharacterised protein family UPF0449 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 5.6 0.015 8.2 56 101 .] 2062 2107 .. 2005 2107 .. 0.81 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.015 UPF0449 56 eveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeeeiee 101 + e++ +++ ++ ++L+e++ +L+++c++L+ + +e+ei+e T319431_3 2062 NTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINE 2107 3778888888888888999999999999999999999999999975 PP >> OmpH Outer membrane protein (OmpH-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.1 4.3 2.4e+03 45 67 .. 2032 2054 .. 2021 2059 .. 0.74 2 ? 9.0 3.9 0.0021 1.2 22 91 .. 2061 2128 .. 2058 2131 .. 0.86 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 4.3 HHHHHHHHHHHHHHHHHHHHHHH CS OmpH 45 fkklqaeleakekelqkkqeelq 67 +++l++++++k+ke ++ +++l+ T319431_3 2032 YSELREDIQTKGKEVENFEKNLE 2054 45677778888888877777775 PP == domain 2 score: 9.0 bits; conditional E-value: 0.0021 E-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH..HHHHHHHHHH CS OmpH 22 vdvqkileespegkaaqkqlekefkklqaeleakekelqkkqeelqkkakklekeekeqe..lqkkeqelqa 91 +++k+l+e e k+ +++l++e +l+ +++e+ ++++e+++ + +e k++e +++ eq lq+ T319431_3 2061 TNTEKCLKELMELKTKAQELREECRSLRSRCDQLEERVSAMEDEINEMK----REGKFREksIRRNEQSLQE 2128 699******************************************8433....4555555559999999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1082 (0.0663559); expected 326.1 (0.02) Passed bias filter: 542 (0.0332393); expected 326.1 (0.02) Passed Vit filter: 175 (0.0107322); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 29 [number of targets reported over threshold] # CPU time: 1.70u 0.44s 00:00:02.14 Elapsed: 00:00:00.80 # Mc/sec: 7709.94 // Query: T064250_1 [L=2456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 9624.93 // Query: T064250_2 [L=2456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.60 # Mc/sec: 11710.33 // Query: T064250_3 [L=2455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.63 # Mc/sec: 11148.16 // Query: T216716_1 [L=1141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 5351.16 // Query: T216716_2 [L=1141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 6277.32 // Query: T216716_3 [L=1140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 5176.74 // Query: T204933_1 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 13551.30 // Query: T204933_2 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.70 # Mc/sec: 14712.84 // Query: T204933_3 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 38 (0.00233043); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.29s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 14505.62 // Query: T291138_1 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-46 156.2 2.5 1.3e-45 155.5 2.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0012 18.6 3.1 0.0017 18.1 1.0 2.2 2 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.5 2.5 1.6e-49 1.3e-45 1 222 [] 2069 2325 .. 2069 2325 .. 0.92 Alignments for each domain: == domain 1 score: 155.5 bits; conditional E-value: 1.6e-49 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpis +s+d k+lnk++akr++++++kl++++q+gf pg + + ++ + ++++++ + k+++++++D +kaFd+++ ++ l T291138_1 2069 IPKPGrdttkKENFRPISPMSIDEKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQHINRTNDKNHMIISIDAEKAFDKIQQHFML 2166 899999999999***************************************************999999999999*********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ ++ +++ +ng++ e ++ k+g++qG++lSPllfn++++ l r++r++ ++v+l+++aDD++++ + T291138_1 2167 KTLNKLGIDGTYLKIIRAIYDKPAANIILNGHKLEAFPLKTGTRQGCALSPLLFNIMLEVLARKIRQEKeikgiqlekEEVKLSLFADDMTVYLANpI 2264 ********************************99*********************************99***************************55 PP HHHHHHHHHHHHHHHHTT-.-BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesgl.kinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ ++ kin +K++++l+ s+ s+++kyLG++l T291138_1 2265 VSAQNLLKLISNFS-KVSG*KINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 2325 55777777777765.555677999******99999988877761156678*********986 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.2 1.6e+03 16 28 .. 180 192 .. 179 192 .. 0.92 2 ! 18.1 1.0 2e-07 0.0017 25 48 .. 1148 1171 .. 1145 1174 .. 0.90 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.2 HSBP1 16 dkFqtmsdqilsr 28 kFq+ s++il+r T291138_1 180 AKFQKTSHEILQR 192 59*********97 PP == domain 2 score: 18.1 bits; conditional E-value: 2e-07 HSBP1 25 ilsriDdMssriDdLEksiadlmt 48 + +r+D M +ri +LEk+i+dlm+ T291138_1 1148 LEKRLDKMLTRITSLEKNINDLMQ 1171 558********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 654 (0.0401079); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 9842.00 // Query: T291138_2 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.62 # Mc/sec: 12223.13 // Query: T291138_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 10983.10 // Query: T012510_1 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.69 # Mc/sec: 3117.89 // Query: T012510_2 [L=752] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (752 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.54 # Mc/sec: 3983.97 // Query: T012510_3 [L=751] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (751 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3305.36 // Query: T333181_1 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1415 (0.0867779); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.89 # Mc/sec: 2439.74 // Query: T333181_2 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1239 (0.0759843); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.42s 00:00:01.86 Elapsed: 00:00:00.77 # Mc/sec: 2819.96 // Query: T333181_3 [L=758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1367 (0.0838342); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.48s 00:00:01.96 Elapsed: 00:00:00.74 # Mc/sec: 2930.42 // Query: T209646_1 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 5732.06 // Query: T209646_2 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 5254.39 // Query: T209646_3 [L=1102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 5084.89 // Query: T090250_1 [L=7647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.39s 00:00:02.38 Elapsed: 00:00:00.68 # Mc/sec: 32171.72 // Query: T090250_2 [L=7647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.40s 00:00:02.00 Elapsed: 00:00:00.64 # Mc/sec: 34182.45 // Query: T090250_3 [L=7647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 777 (0.0476512); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.75u 0.48s 00:00:03.23 Elapsed: 00:00:00.71 # Mc/sec: 30812.35 // Query: T321830_1 [L=564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 30 (0.00183981); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 3227.02 // Query: T321830_2 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-05 22.2 1.0 0.0003 19.6 1.0 1.9 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 1.0 1.9e-08 0.0003 285 321 .. 183 219 .. 139 241 .. 0.78 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 1.9e-08 E---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEE CS Transposase_22 285 adlsaetlkarrewtdviqilkekkfqPrllyPakls 321 + + +et++a+r+ +++q lkek qPr l+P +s T321830_2 183 SRFPSETMEAKRKRHNIFQELKEKSSQPRYLHPVTIS 219 45889****************************9877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3221.29 // Query: T321830_3 [L=563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3287.04 // Query: T308773_1 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 3736.59 // Query: T308773_2 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3661.86 // Query: T308773_3 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-09 35.0 0.4 1.3e-08 34.1 0.4 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.4 7.9e-13 1.3e-08 1 19 [] 537 555 .. 537 555 .. 0.98 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 7.9e-13 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE IILS+ +Q T308773_3 537 SFAGTWMKLEAIILSKLTQ 555 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3590.06 // Query: T198200_1 [L=1214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6809.90 // Query: T198200_2 [L=1214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1214 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.50 # Mc/sec: 6946.10 // Query: T198200_3 [L=1213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1213 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6804.29 // Query: T219691_1 [L=654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 3818.33 // Query: T219691_2 [L=653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 3812.49 // Query: T219691_3 [L=653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 12.2 2.9 1 10.0 2.9 2.3 1 hEGF Human growth factor-like EGF Domain annotation for each model (and alignments): >> hEGF Human growth factor-like EGF # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 2.9 6.3e-05 1 3 22 .] 420 438 .. 419 438 .. 0.84 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 6.3e-05 TT-EES..-SS.-EE--TTX CS hEGF 3 nGGtCidgvggykCiCpPGy 22 +GG C + + C+C PG+ T219691_3 420 GGGACS-EPRSRHCHCTPGW 438 799***.55666******** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 3662.98 // Query: T051733_1 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.48 # Mc/sec: 1454.26 // Query: T051733_2 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1485.20 // Query: T051733_3 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.68 10.3 7.2 0.26 11.6 1.9 2.1 2 LEA_5 Small hydrophilic plant seed protein Domain annotation for each model (and alignments): >> LEA_5 Small hydrophilic plant seed protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.9 1.6e-05 0.26 16 66 .. 94 145 .. 91 157 .. 0.83 2 ? 1.3 0.3 0.025 4.1e+02 30 51 .. 202 223 .. 188 236 .. 0.64 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 1.6e-05 LEA_5 16 regetvvpggtggksleaqehlaegrsrggqtrkeqlgs.egykelgskgge 66 re +t v ggt g + + q + +e ++gg++ + g + + +g++ g+ T051733_3 94 READTPVRGGTPGAQAQHQRKATESETHGGGAAARAPGDtNTAESIGRRAGH 145 7889*************************99988877751455668888875 PP == domain 2 score: 1.3 bits; conditional E-value: 0.025 LEA_5 30 sleaqehlaegrsrggqtrkeq 51 aq++ e r r gq+r e T051733_3 202 GSLAQKRWREARKRPGQSRPEP 223 3346666666666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 1454.26 // Query: T228577_1 [L=539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 3212.47 // Query: T228577_2 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3206.51 // Query: T228577_3 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-13 48.6 0.0 1e-12 48.0 0.0 1.3 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.024 15.2 0.0 0.043 14.4 0.0 1.5 1 Asp_protease_2 Aspartyl protease 0.085 13.3 0.0 0.17 12.3 0.0 1.5 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.0 0.0 1.9e-16 1e-12 6 100 .. 222 311 .. 217 312 .. 0.86 Alignments for each domain: == domain 1 score: 48.0 bits; conditional E-value: 1.9e-16 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEE.EEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqska.ievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++++ ++gk i l+DtGA+++ ++ + P + a ++ Gi g+ ++ ++ +l+++ f + s+l++p++p++llGr++L+kl + L T228577_3 222 RVTLTVEGKSIPCLIDTGATHSTLPSFQGPVS----LAPITVVGIDGQASKPLKTPpLWCQLGQHSFMH--SFLVIPTCPLPLLGRNILTKLSASL 311 689999**************************....************966666650445566666666..*********************9988 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 7.8e-06 0.043 1 24 [. 223 246 .. 223 300 .. 0.94 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 7.8e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlis 24 v++t++Gk + +l+DTGa++++++ T228577_3 223 VTLTVEGKSIPCLIDTGATHSTLP 246 6789****************9986 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 3.2e-05 0.17 1 24 [. 223 246 .. 223 248 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 3.2e-05 EEEEETTEEEEEEEETT-SS-EEE CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiis 24 v++t++gk++ l+DTGA++++++ T228577_3 223 VTLTVEGKSIPCLIDTGATHSTLP 246 6789****************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 3078.25 // Query: T224878_1 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 6139.78 // Query: T224878_2 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6385.37 // Query: T224878_3 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.47 # Mc/sec: 6786.86 // Query: T312362_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 4157.33 // Query: T312362_2 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 4151.25 // Query: T312362_3 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.45 # Mc/sec: 4335.75 // Query: T291394_1 [L=1440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8582.49 // Query: T291394_2 [L=1440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 8239.19 // Query: T291394_3 [L=1440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 8239.19 // Query: T114669_1 [L=926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 5636.44 // Query: T114669_2 [L=925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.60 # Mc/sec: 4410.45 // Query: T114669_3 [L=925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 4562.53 // Query: T001571_1 [L=1742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 606 (0.0371642); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.61 # Mc/sec: 8169.78 // Query: T001571_2 [L=1742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 656 (0.0402306); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.59 # Mc/sec: 8446.72 // Query: T001571_3 [L=1741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 448 (0.0274745); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 7324.57 // Query: T103719_1 [L=3374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.72 # Mc/sec: 13406.17 // Query: T103719_2 [L=3374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.5 0.0 0.056 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.059 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.06 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2929 3264 .. 2929 3264 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103719_2 2929 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3014 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103719_2 3015 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3071 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103719_2 3072 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3164 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103719_2 3165 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3257 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103719_2 3258 QLLQNHA 3264 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.056 1 72 [. 3299 3368 .. 3299 3373 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103719_2 3299 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3368 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2953 3076 .. 2919 3083 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103719_2 2953 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3046 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103719_2 3047 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3076 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 2994 3083 .. 2992 3085 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103719_2 2994 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3083 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 2980 3081 .. 2979 3083 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103719_2 2980 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3074 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103719_2 3075 QEIWDYV 3081 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 2982 3076 .. 2978 3083 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103719_2 2982 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3076 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1004 1018 .. 990 1021 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 2987 3039 .. 2980 3045 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103719_2 1004 SKKKKRKKERKKR-----KK 1018 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103719_2 2987 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3039 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3012 3071 .. 2992 3079 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103719_2 3012 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3071 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3374 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 916 (0.0561756); expected 326.1 (0.02) Passed bias filter: 364 (0.0223231); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.67u 0.37s 00:00:02.04 Elapsed: 00:00:00.80 # Mc/sec: 12065.55 // Query: T103719_3 [L=3373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.30s 00:00:01.57 Elapsed: 00:00:00.74 # Mc/sec: 13039.97 // Query: T051155_1 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 593 (0.036367); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.54 # Mc/sec: 15453.78 // Query: T051155_2 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.3 9.7 12.7 0.41 9.2 12.7 1.1 1 Tim54 Inner membrane protein import complex subunit T 3.5 7.6 7.6 5.6 6.9 7.6 1.2 1 DDHD DDHD domain Domain annotation for each model (and alignments): >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 12.7 5.1e-05 0.41 199 250 .. 1647 1698 .. 1616 1749 .. 0.49 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 5.1e-05 Tim54 199 eeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvp 250 e+++e++ee++ee+eeee eee+eeee+eee++ee++ee+eeee+e++++++ T051155_2 1647 EQKKEQKEEQKEEQEEEELEEEQEEEEQEEEQKEEQKEEQEEEEQEEEQPCL 1698 1111111111111111111112222223333333333333333333333332 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 7.6 0.00068 5.6 130 188 .. 1631 1692 .. 1588 1733 .. 0.50 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00068 DDHD 130 esaklaesqkshe.....rssesskesqeskaaesssasssaksssaeekveledkelee.eaee 188 e+ +++e+++ e ++++++ke+q+++++e++ ++++++ +++ee+++ e+ke++e e++e T051155_2 1631 EQGEEQEEEQ--Ekv*eeEQKKEQKEEQKEEQEEEELEEEQEE-EEQEEEQKEEQKEEQEeEEQE 1692 2222222222..2334322222222222222222222222222.222222222222222212222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2108 (0.129278); expected 326.1 (0.02) Passed bias filter: 752 (0.046118); expected 326.1 (0.02) Passed Vit filter: 319 (0.0195634); expected 16.3 (0.001) Passed Fwd filter: 54 (0.00331166); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.65u 0.46s 00:00:04.11 Elapsed: 00:00:01.03 # Mc/sec: 8101.98 // Query: T051155_3 [L=2916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 911 (0.055869); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.39s 00:00:02.01 Elapsed: 00:00:00.75 # Mc/sec: 11122.91 // Query: T360071_1 [L=94] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00018 21.4 0.0 3.3 7.8 0.0 3.0 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.7 0.0 0.00092 15 46 69 .. 13 36 .. 8 38 .. 0.81 2 ! 7.8 0.0 0.00021 3.3 50 74 .. 42 67 .. 40 71 .. 0.55 3 ! 7.0 0.0 0.00035 5.7 47 73 .. 64 91 .. 61 94 .] 0.66 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00092 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfs 69 v++++++++ +++ g++ k +++ T360071_1 13 VEWNGMEWNGMEWNGMECKRMEWN 36 788999999999999988888775 PP == domain 2 score: 7.8 bits; conditional E-value: 0.00021 Pentapeptide_4 50 eadlkrasFsgcdlknvnfsg.klkd 74 +++++ +++ g+++++ ++++ ++++ T360071_1 42 GMEWNGMEWNGMEWNGMEWNAiEWNG 67 55555566666666666655545554 PP == domain 3 score: 7.0 bits; conditional E-value: 0.00035 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klk 73 ++++++ + +++ g+++++ +++g +++ T360071_1 64 EWNGINSRGMEWNGMEWNGMEWNGmEWN 91 6777777777777777777777665655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (94 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.60 # Mc/sec: 448.20 // Query: T360071_2 [L=94] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00015 21.7 0.1 1.2 9.2 0.0 3.0 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 0.0 7.3e-05 1.2 46 75 .. 6 36 .. 2 38 .. 0.75 2 ! 5.7 0.0 0.00086 14 52 73 .. 37 59 .. 31 62 .. 0.48 3 ! 4.7 0.0 0.0018 30 47 68 .. 72 93 .. 69 94 .] 0.73 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 7.3e-05 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg.klkda 75 ++++ +++ +++ g+++++ ++++ +++++ T360071_2 6 MEWNQLEWNGMEWNGMEWNGMEWNArEWNGI 36 5788888888888888888888876577766 PP == domain 2 score: 5.7 bits; conditional E-value: 0.00086 Pentapeptide_4 52 dlkrasFsgcdlknvnfsg.klk 73 + + +++ g+++++ +++g +++ T360071_2 37 NSSGMEWNGMEWNGMEWNGmEWN 59 44455555555555555443443 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0018 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnf 68 ++++++++ +++ g+++++ ++ T360071_2 72 EWNGMEWNGMEWNGMEWNGMEW 93 5777788888888887777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (94 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.54 # Mc/sec: 498.00 // Query: T360071_3 [L=93] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.7 0.0 10 6.2 0.0 3.0 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.3 0.0 0.0012 20 46 70 .. 4 28 .. 1 35 [. 0.58 2 ! 6.2 0.0 0.00064 10 47 72 .. 40 66 .. 33 71 .. 0.61 3 ! 5.2 0.0 0.0013 21 49 69 .. 72 92 .. 60 93 .] 0.55 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0012 Pentapeptide_4 46 vdfaeadlkrasFsgcdlknvnfsg 70 ++++++ + +++ g+++++ +++g T360071_3 4 IEWNGINSSGMEWNGMEWNGMEWNG 28 4555555556666666666655554 PP == domain 2 score: 6.2 bits; conditional E-value: 0.00064 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.kl 72 +++++++ +++ g+++++ + ++ ++ T360071_3 40 AWNGMEWNGMEWNGMEWNGMECNRmEW 66 566666666666666666655533344 PP == domain 3 score: 5.2 bits; conditional E-value: 0.0013 Pentapeptide_4 49 aeadlkrasFsgcdlknvnfs 69 ++++++ +++ g+++++ ++s T360071_3 72 NGMEWNGMEWNGMEWNGMEWS 92 455555555555555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (93 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.59 # Mc/sec: 450.94 // Query: T300745_1 [L=961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 4659.76 // Query: T300745_2 [L=961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0027 17.6 3.0 0.0064 16.4 3.0 1.6 1 Mucin-like Mucin-like ------ inclusion threshold ------ 2.3 7.2 6.5 3.6 6.5 6.5 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 3.0 7.8e-07 0.0064 10 87 .. 281 358 .. 273 362 .. 0.82 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 7.8e-07 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 asp+ yg r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300745_2 281 RASPERRYGIDGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 358 567888888888999999999999999999999999999999999999999999988888888888888888888877 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 6.5 0.00045 3.6 243 305 .. 301 358 .. 274 374 .. 0.67 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00045 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 243 gapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ + dp t d dp t+d dp T300745_2 301 ADPGTTEDSVTADPGTTEDNVTVDPGTTEGS-----VTADPATTKDYVSADPGTTKDSVTADP 358 3345555555555555555555555554432.....467777788888888888877777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.68 # Mc/sec: 4043.03 // Query: T300745_3 [L=961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-09 36.5 0.7 6.7e-09 35.6 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2e-06 27.7 4.4 4.6e-06 26.5 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.6 0.7 8.3e-13 6.7e-09 2 62 .. 455 516 .. 454 519 .. 0.86 Alignments for each domain: == domain 1 score: 35.6 bits; conditional E-value: 8.3e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300745_3 455 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 516 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 4.4 5.6e-10 4.6e-06 10 82 .. 370 442 .. 357 449 .. 0.54 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 5.6e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300745_3 370 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 442 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 4295.72 // Query: T167921_1 [L=2243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-16 58.3 1.3 1e-15 57.0 1.3 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 4.3e-06 26.4 0.4 1.1e-05 25.2 0.4 1.6 1 G-patch G-patch domain 0.00055 19.7 0.0 0.0009 19.0 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) ------ inclusion threshold ------ 0.049 13.6 0.1 0.098 12.6 0.1 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.0 1.3 2.5e-19 1e-15 2 34 .. 601 633 .. 600 635 .. 0.92 Alignments for each domain: == domain 1 score: 57.0 bits; conditional E-value: 2.5e-19 --B-TTT-SSBS-TTT---SEEGGGEE---XXX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsaneg 34 pgl ++CkkgkHwa++Chskfdk+Gnp s n T167921_1 601 PGLYLKCKKGKHWANQCHSKFDKDGNPISRNAM 633 8999************************98765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.4 2.6e-09 1.1e-05 7 44 .. 901 938 .. 896 939 .. 0.94 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 2.6e-09 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ G+ LGk+ qG +e+++a+++ r lG+ T167921_1 901 HMMHEMGYVHGMELGKNLQGLKESLQAERQSSRQDLGY 938 6********************************99997 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 2.2e-07 0.0009 43 113 .. 385 457 .. 375 461 .. 0.83 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 2.2e-07 Gag_p24 43 r..vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalek 113 ++ ++l+ +++w +e + + ++++pi+++ d+ll g a + q+ ++ +v+ q+r ++++a+ek T167921_1 385 AclAPAQFLQfKTWWPDEASIQ-AACSAQIQPPINVTTDQLLRVGGWAALDAQVVMQDDVIDQLRGVCIRAWEK 457 2236677778889999998888.677778889**************999888888888**************98 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 2.4e-05 0.098 23 47 .. 2023 2047 .. 2020 2057 .. 0.83 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 2.4e-05 HERV-K_REC 23 stkkaepptwaqlkkltqlatkyle 47 t + +pptw q+kkl+q+ l T167921_1 2023 NTHRKQPPTWGQIKKLSQMVEENLR 2047 588899************9877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:00.77 # Mc/sec: 8333.56 // Query: T167921_2 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-28 99.4 0.0 9.1e-24 84.3 0.0 2.4 2 Gag_p24 gag gene protein p24 (core nucleocapsid protei 5.1e-22 78.2 0.0 1.7e-21 76.5 0.0 1.8 2 rve Integrase core domain 2e-13 49.9 0.7 6.1e-13 48.3 0.7 1.9 1 Integrase_Zn Integrase Zinc binding domain 5.2e-11 42.3 0.1 5e-10 39.1 0.0 2.1 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 3.1e-07 29.5 0.8 9.4e-07 27.9 0.8 1.9 1 IN_DBD_C Integrase DNA binding domain 9.7e-06 25.2 0.1 2e-05 24.2 0.1 1.5 1 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 0.011 15.8 0.0 0.021 14.9 0.0 1.4 1 DDE_Tnp_IS240 DDE domain 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.0 4e-05 0.081 1 39 [. 341 381 .. 341 391 .. 0.83 2 ! 84.3 0.0 4.4e-27 9.1e-24 112 205 .] 456 549 .. 447 549 .. 0.93 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4e-05 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalae..qalpkdlek 39 +k L+++k+a++qygp sp+v+ l +++a+ q++p d T167921_2 341 FKLLNEFKQAINQYGPRSPFVMGLSKNVATssQMIPIDGTL 381 689**********************9997522668888655 PP == domain 2 score: 84.3 bits; conditional E-value: 4.4e-27 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCqgvggavhkarvl 205 +ki + g++ + ++ ++QGpkEpy df+a l+++l+k++ad +a+d++++ La++NANp+Cq++l ++ ++ l d+++aC+ +gg hka +l T167921_2 456 KKISSGGEQYPYFSAVKQGPKEPYADFIAWLQESLKKVIADSTAQDIVLQLLAFDNANPKCQAAL*PVRG-KAHLVDYIKACDSIGGNLHKATLL 549 78999999999***************************************************99776544.689******************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 2 4.1e+03 101 117 .. 678 694 .. 676 695 .. 0.90 2 ! 76.5 0.0 8.3e-25 1.7e-21 3 118 .. 1558 1668 .. 1557 1669 .. 0.92 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 2 rve 101 rpqdnGkvErfnrtlkd 117 +p +++ +E +nr l++ T167921_2 678 SPAWKATAEGTNRSLRT 694 799**********9986 PP == domain 2 score: 76.5 bits; conditional E-value: 8.3e-25 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + g+ ay++v +d+fs++++a + s e ++ v + l + + g p + +Dn++ yts+a+++f + ++i+ + p+ T167921_2 1558 EPNSLWQMDVTHVP--SFGRLAYVHVCVDTFSHFVWATCQSGE-SSACVKHHLLQCFVVMGI--PASIKTDNAPSYTSQALATFFSIWNIEDITGIPY 1650 69************..56777**********************.666667777777778888..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 ++q +++vEr+n lk++ T167921_2 1651 NSQGQAIVERMNLSLKQQ 1668 ***************997 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.3 0.7 3e-16 6.1e-13 1 37 [. 1515 1551 .. 1515 1552 .. 0.98 Alignments for each domain: == domain 1 score: 48.3 bits; conditional E-value: 3e-16 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+++H+l+H+N +Lr++++it+++A++I q CptCq T167921_2 1515 ARQFHNLTHVNVSGLRHRYSITWKEAKAINQRCPTCQ 1551 89**********************************8 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.16 3.2e+02 3 26 .. 1001 1020 .. 999 1028 .. 0.86 2 ! 39.1 0.0 2.5e-13 5e-10 132 219 .. 1085 1166 .. 1083 1169 .. 0.94 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.16 -TT.S-EEE......-THHHHCTB CS RVT_1 3 KkgpgsyRpisllsvdykalnkli 26 K++pg++R++ +d++a+n++i T167921_2 1001 KTKPGKWRML----TDLRAINSAI 1020 44469****7....7******986 PP == domain 2 score: 39.1 bits; conditional E-value: 2.5e-13 --ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 132 lpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + qG+ +SP++++ ++ +++++ +kr++++++++ +DDil++s ++e l +++ ++e+ ++ + l i+p+ ++ + +++ yLG T167921_2 1085 VAQGMLNSPTICQTYVGQAIEPTHKRFSQCYIIHHMDDILCASPTPEILLQCYGHLENSISHASLIIAPDAIQTT------TPYVYLG 1166 67*******************************************************************988888......6777776 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.8 4.6e-10 9.4e-07 19 49 .. 1956 1986 .. 1940 1987 .. 0.80 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 4.6e-10 EEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 19 dpvLikgrGavcvFPqdasdikwvPeRlvrk 49 +++++grG++cv P ++++++wvP R +++ T167921_2 1956 GKIITWGRGYACVSPGQNQQPIWVPSRYLKP 1986 589*************************996 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.1 9.6e-09 2e-05 43 83 .. 170 210 .. 170 211 .. 0.88 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 9.6e-09 Gag_p10 43 GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevL 83 G +d+e+W+ vg+ lk +a + g e ip++v+s+w+li++ L T167921_2 170 GNMDVEVWEEVGSALK-KAYKDGaEDIPITVWSVWALIHSTL 210 789*************.5555666**************9988 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 1e-05 0.021 2 115 .. 1561 1674 .. 1560 1683 .. 0.83 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 1e-05 DDE_Tnp_IS240 2 kswrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasaya.salkelkregelfdevshvqvk. 93 + w++D T v G+ aY+ vD + + + + + +k l +++ + p++i tD a++y +al++++ + +++ + T167921_2 1561 SLWQMDVTHVPSFGRLAYVHVCVDTFSHFVWATCQSGESSACVKHHLLQCFVVM-GIPASIKTDNAPSYTsQALATFFSIWN-IEDITGIPYNs 1652 57**************************9999999999999999*********9.**************7358999998434.34444443331 PP DDE_Tnp_IS240 94 ylnnriEsdhrtlKkrlrptrg 115 + ++E+ + lK++l++++g T167921_2 1653 QGQAIVERMNLSLKQQLQKQKG 1674 446689**********999887 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00012 0.25 110 142 .. 1476 1512 .. 1462 1513 .. 0.77 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00012 CHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 110 lakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 + + ++++h+++H+ + gN+maD+l+ a+ T167921_2 1476 RSRMHPFYITHIRAHTPLpgplTVGNQMADHLVATAI 1512 234789*********999888867********98775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.68 # Mc/sec: 9432.32 // Query: T167921_3 [L=2242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-17 60.7 0.0 1.4e-16 59.8 0.0 1.4 1 RVT_thumb Reverse transcriptase thumb domain 3.1e-15 56.1 0.1 6.3e-15 55.2 0.1 1.5 1 RVP Retroviral aspartyl protease 3.9e-14 52.3 0.0 7.2e-14 51.5 0.0 1.4 1 dUTPase dUTPase 6.1e-07 29.6 0.0 9.6e-07 29.0 0.0 1.3 1 RNase_H RNase H 6.7e-05 22.0 0.2 0.00014 20.9 0.2 1.5 1 IN_DBD_C Integrase DNA binding domain 0.00013 21.6 0.3 0.00031 20.4 0.0 1.7 2 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 0.26 10.7 0.1 0.39 10.1 0.1 1.1 1 Filament Intermediate filament protein Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.8 0.0 6e-20 1.4e-16 16 66 .] 1191 1241 .. 1187 1241 .. 0.98 Alignments for each domain: == domain 1 score: 59.8 bits; conditional E-value: 6e-20 HHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 16 DfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 DfQ Llg INWi p lgi t+ ++ LF+i rGd++ tsp qLT+eAe++L+ T167921_3 1191 DFQNLLGYINWIPPALGILTYAMSTLFSIFRGDPSVTSPWQLTKEAEAELQ 1241 9************************************************97 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.2 0.1 2.7e-18 6.3e-15 2 90 .. 787 874 .. 786 884 .. 0.96 Alignments for each domain: == domain 1 score: 55.2 bits; conditional E-value: 2.7e-18 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-H CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGr 90 +++P ++ i+ k++++l+DtG d+++is +++P wp++ a+ ++ G+ +a e++qs++ +++ + + + g+++p+i++ +p+nl+G T167921_3 787 DNHPTCEKTIQRKKFKGLVDTGVDISIISLHHWPSAWPIQPAQFNIVGVDKAPEVYQSSYTLHCKGPDGQPGTIQPIITS-IPINLWGL 874 57899**************************************************************************9.*******5 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.0 3.1e-17 7.2e-14 7 106 .. 659 757 .. 657 777 .. 0.84 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 3.1e-17 BESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-E..EE-TT-EEEEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdv..kikkgdRiAqLifar 103 +++++sA Dl+ ++ + + p + + vpt+++ +lp+g+ +l+l+RS+l++kg+ v++gvid d +Ge+++v+ + v k + g+Ri qL++ + T167921_3 659 SPATAGSASVDLCCTRAVSLLPgKPLQKVPTGVCGPLPAGMVGLLLGRSSLNLKGVQVHTGVIDLDCNGEIQIVISTS----Vp*KAEPGERIGQLLILP 754 6899******************777799*****************************************999999654....444467888888888887 PP BEC CS dUTPase 104 ilt 106 ++ T167921_3 755 YVG 757 776 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.0 4.1e-10 9.6e-07 5 74 .. 1389 1446 .. 1385 1449 .. 0.85 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 4.1e-10 EEEEEEEEECTTTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHH CS RNase_H 5 vvYtDGsclgnsgeggaga.vlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvv 74 +v++DGs++ g+a + +l+++ +++p+ +++++aEL+AvieaL a + +n+++DS+Yvv T167921_3 1389 NVFADGSSN-----GKASYsGLKGK---VFQTPY---TSAQKAELEAVIEALTA--FNMPINMISDSSYVV 1446 79*****88.....88888666644...666666...6****************..8999*********97 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.2 6.2e-08 0.00014 19 49 .. 1737 1767 .. 1725 1768 .. 0.82 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 6.2e-08 EEEEEEETTEEEE..E-.SS-EEEEEGGGEEE CS IN_DBD_C 19 dpvLikgrGavcvFPqd.asdikwvPeRlvrk 49 +++++grG++cv +++ +++++wvP R +++ T167921_3 1737 GKIITWGRGYACV-SKGlNQQPIWVPLRHLKP 1767 589**********.7764889*******9985 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 1.3e-07 0.00031 2 42 .. 129 169 .. 128 171 .. 0.88 2 ? -3.3 0.1 3.2 7.6e+03 35 40 .. 907 912 .. 906 914 .. 0.83 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 1.3e-07 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee 42 ++ +l++ ++Ll++ G+kvs+ + l +++++ve++cPWFp e T167921_3 129 HKAYLSLPRQLLRKGGVKVST-S*LMQLFSMVEKYCPWFPTE 169 577999999**********96.6667899***********87 PP == domain 2 score: -3.3 bits; conditional E-value: 3.2 Gag_p10 35 vcPWFp 40 vcPW++ T167921_3 907 VCPWYG 912 7****8 PP >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.1 0.00017 0.39 98 129 .. 1233 1264 .. 1225 1265 .. 0.91 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00017 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Filament 98 reevEaelkalrkdldeatlarvdLekkvesL 129 +e+Eael+ + k++++a+++r+dLe+ ++ L T167921_3 1233 TKEAEAELQLIEKQVHKAQINRIDLENTLDLL 1264 679************************99876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.70 # Mc/sec: 9162.83 // Query: T258989_1 [L=2839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.70 # Mc/sec: 11602.71 // Query: T258989_2 [L=2839] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2839 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.70 # Mc/sec: 11602.71 // Query: T258989_3 [L=2838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.3 6.6 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00062 10 6 41 .. 1848 1883 .. 1834 1894 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00062 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258989_3 1848 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1883 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.62 # Mc/sec: 13095.22 // Query: T001569_1 [L=5862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.35s 00:00:02.25 Elapsed: 00:00:00.85 # Mc/sec: 19729.63 // Query: T001569_2 [L=5862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.37s 00:00:02.25 Elapsed: 00:00:00.83 # Mc/sec: 20205.04 // Query: T001569_3 [L=5862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.32s 00:00:02.14 Elapsed: 00:00:00.82 # Mc/sec: 20451.45 // Query: T276719_1 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 9591.31 // Query: T276719_2 [L=1910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.66 # Mc/sec: 8279.07 // Query: T276719_3 [L=1910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.62 # Mc/sec: 8813.20 // Query: T275323_1 [L=3565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.57 # Mc/sec: 17584.24 // Query: T275323_2 [L=3565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.31s 00:00:01.64 Elapsed: 00:00:00.74 # Mc/sec: 13782.24 // Query: T275323_3 [L=3564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.71 # Mc/sec: 14360.56 // Query: T383932_1 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-05 24.1 0.0 3.2e-05 23.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 1.9e-09 3.2e-05 148 196 .. 13 64 .. 3 70 .. 0.82 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 1.9e-09 Gag_p30 148 keayrrytpydpedpeqkasvalsfiaqsasdirkklq...rleglqeatlk 196 eay +ytp+d e+pe+++ + ++ +qs+ di +klq r+eg+++ l T383932_1 13 FEAYCMYTPFDLESPENQCMINTALGHQSTGDIIRKLQkqaRFEGINTSLLL 64 69***********************************944456676666554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.22s 00:00:00.96 Elapsed: 00:00:00.67 # Mc/sec: 4778.01 // Query: T383932_2 [L=1118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-08 32.2 3.4 1.9e-07 30.9 3.4 1.6 1 HERV-K_REC Rec (regulator of expression encoded by corf 4.1e-05 23.7 0.0 9.6e-05 22.5 0.0 1.6 1 RVP Retroviral aspartyl protease 0.0066 16.4 2.6 0.016 15.1 2.6 1.7 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.041 13.5 1.0 0.11 12.1 1.0 1.7 1 zf-C2H2_10 C2H2 zinc-finger 0.18 12.3 0.0 0.31 11.5 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 3.4 5.8e-11 1.9e-07 4 75 .. 770 841 .. 768 849 .. 0.92 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 5.8e-11 HERV-K_REC 4 plthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmn 75 p h+m +m s eqm t +a pptw ++k+l++ l t +++a+++++ +vv+l+ + T383932_2 770 PPVHQMAQMNISVEQMETSKTYQATPPTWGRMKRLARTEEENLRSQHKLLTTSNLMVATMVVIPLVVSLPAE 841 678****************************************99988889899999999999*****9876 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.0 2.9e-08 9.6e-05 3 57 .. 185 235 .. 183 260 .. 0.75 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 2.9e-08 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetk 57 ++P++ +++ gk ie+l+ tGA+++v++ P + k++ + ++g +e++ T383932_2 185 YEPMVSMRVRGKDIEFLVNTGAEHSVVTTPITPLS----KKTIDIFRATGVSEKQ 235 68***************************999999....5555555555555444 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 2.6 4.9e-06 0.016 2 18 .] 130 146 .. 129 146 .. 0.94 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 4.9e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C +C e+GH++ Cp+ T383932_2 130 QCAYCKEIGHWKDKCPQ 146 8***************7 PP >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 1.0 3.4e-05 0.11 5 19 .. 130 144 .. 128 146 .. 0.85 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 3.4e-05 zf-C2H2_10 5 tCSYChetGHtRAkC 19 +C YC+e+GH kC T383932_2 130 QCAYCKEIGHWKDKC 144 7*********88777 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 9.4e-05 0.31 1 25 [. 189 213 .. 189 227 .. 0.92 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 9.4e-05 EEEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiise 25 v++++ gk+++flv TGA+++++++ T383932_2 189 VSMRVRGKDIEFLVNTGAEHSVVTT 213 57899*****************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.64 # Mc/sec: 4997.51 // Query: T383932_3 [L=1118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-37 128.4 0.3 4.2e-37 127.4 0.3 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.4 0.3 2.6e-41 4.2e-37 9 166 .. 868 1028 .. 863 1030 .. 0.84 Alignments for each domain: == domain 1 score: 127.4 bits; conditional E-value: 2.6e-41 HERV-K_env_2 9 ievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspis.rftyhmvsgmslrp..rvnylqdfsy 100 yvndsvw+pgpid++ p++peeegm++++sigy++ppiclg a gcl q w+v vp + + + h++sg +++ ++yl+ y T383932_3 868 SGGYVNDSVWMPGPIDNQGPTHPEEEGMLMKVSIGYHFPPICLGPAAGCLNYDKQRWMVYVPEHN--G*KASIHVISGRTFQSldTIKYLE-HGY 959 556***********************************************************865..455678999999887522677875.456 PP HERV-K_env_2 101 qrslkfrpkgkpc...pkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtq 166 + + k kp p ++n evl we+c+ansa +lqnn +g i dw+ rg+f nc+g+++ T383932_3 960 VMTHHQINKLKPSy*sPAPGRPLNENLEVLTWEDCIANSAAVLQNNSIGIITDWVSRGHFAINCTGHSK 1028 66666666666642324444455789***************************************9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.70 # Mc/sec: 4569.15 // Query: T040788_1 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.05 13.2 1.3 0.083 12.5 1.3 1.3 1 Connexin Connexin 0.91 9.5 5.3 2 8.4 5.3 1.5 1 Eapp_C E2F-associated phosphoprotein 2.7 7.6 7.5 3.6 7.2 7.5 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 1.3 1.5e-05 0.083 106 139 .. 59 92 .. 45 174 .. 0.56 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.5e-05 Connexin 106 ekekkkekkekkeeekkkkkekkkkekeeskkrr 139 +++++++kk+kk+++kkkkk+kkkk+k+++kk++ T040788_1 59 RRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKT 92 1111111111112222222222222222222222 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 5.3 0.00036 2 82 110 .. 63 91 .. 47 128 .. 0.50 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00036 Eapp_C 82 ekkkkkkkkkkkkeekeeeaeaeeaeeee 110 ++kkkkkkkkkkk++k+++++++++++++ T040788_1 63 RRKKKKKKKKKKKKKKKKKKKKKKKKKKK 91 11111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 7.5 0.00066 3.6 117 151 .. 62 93 .. 15 118 .. 0.48 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00066 RR_TM4-6 117 engekeekekekeeakkeseeeeeekkkkkkaksk 151 + + k++ k+k+++kk++++++++kkkkkk+k+ T040788_1 62 R-RRKKK--KKKKKKKKKKKKKKKKKKKKKKKKTG 93 1.11111..11111111111122222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1834 (0.112474); expected 326.1 (0.02) Passed bias filter: 659 (0.0404146); expected 326.1 (0.02) Passed Vit filter: 229 (0.0140439); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.40u 0.38s 00:00:01.77 Elapsed: 00:00:00.75 # Mc/sec: 3486.40 // Query: T040788_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.76 8.2 33.0 1.2 7.6 33.0 1.2 1 TT_ORF1 TT viral orf 1 1.7 6.8 38.2 2.2 6.4 38.2 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> TT_ORF1 TT viral orf 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 33.0 0.00014 1.2 25 62 .. 65 101 .. 42 104 .. 0.58 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00014 TT_ORF1 25 rrrrrrrrvRRRrrgrrrrrrrrrrrrrrrrkrkklil 62 rrrrrrrr RRRrr+rrrrrrrrrrrrr r + +l++ T040788_2 65 RRRRRRRR-RRRRRRRRRRRRRRRRRRRQARGKTQLSI 101 22222222.22222333333445555555666666666 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 38.2 0.00027 2.2 136 210 .. 11 90 .. 1 108 [. 0.35 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00027 CDC45 136 d.....eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrky 210 + eeee + +e eeeeeee+++eeeedeee +++++ + +eeeeee+ee r+r+rrr+++++++ rrr++++rr+ T040788_2 11 EgekeeEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRR 90 11211133333334444444444444444444443333332223333333333333333333312222222222222221 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1135 (0.0696063); expected 326.1 (0.02) Passed bias filter: 522 (0.0320128); expected 326.1 (0.02) Passed Vit filter: 243 (0.0149025); expected 16.3 (0.001) Passed Fwd filter: 68 (0.00417024); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.49u 0.36s 00:00:01.85 Elapsed: 00:00:00.76 # Mc/sec: 3440.52 // Query: T040788_3 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.79 10.0 9.9 1.4 9.2 9.9 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 9.9 8.6e-05 1.4 12 38 .. 66 91 .. 57 117 .. 0.51 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 8.6e-05 CENP-B_dimeris 12 sesesdeeeeeeeedeededeeddedd 38 e e +eeeeeeee+ee+e+ee++e+d T040788_3 66 EE-EEEEEEEEEEEEEEEEEEEEEEED 91 22.222222222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2716 (0.166564); expected 326.1 (0.02) Passed bias filter: 1049 (0.0643321); expected 326.1 (0.02) Passed Vit filter: 653 (0.0400466); expected 16.3 (0.001) Passed Fwd filter: 162 (0.00993499); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.89u 0.47s 00:00:03.36 Elapsed: 00:00:01.25 # Mc/sec: 2089.55 // Query: T156371_1 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.27s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 12792.00 // Query: T156371_2 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 375 (0.0229977); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 10534.59 // Query: T156371_3 [L=2504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.70 # Mc/sec: 10233.60 // Query: T230578_1 [L=3284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-24 86.8 0.0 2.3e-24 85.7 0.0 1.5 1 rve Integrase core domain 3.6e-19 68.0 7.6 8.7e-19 66.8 7.6 1.7 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger 8.7e-15 54.3 2.7 2.4e-14 52.8 2.7 1.9 1 Integrase_Zn Integrase Zinc binding domain 3.7e-08 33.6 0.0 6.7e-08 32.7 0.0 1.3 1 RNase_H RNase H 1.6e-05 24.7 0.1 3e-05 23.8 0.1 1.3 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.036 14.1 0.0 0.057 13.5 0.0 1.2 1 DDE_Tnp_IS240 DDE domain 0.037 13.4 0.1 0.069 12.5 0.1 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.7 0.0 9.8e-28 2.3e-24 4 118 .. 1709 1818 .. 1707 1819 .. 0.95 Alignments for each domain: == domain 1 score: 85.7 bits; conditional E-value: 9.8e-28 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 p+ lwq+Dv++++++++ ++++v +d++s++i+a + + e ++s+v + l + g pe+v +Dng+ y+ska+++fl++++i+++ ++ T230578_1 1709 PNVLWQMDVMHVPSFGKL--SFVHVTVDTYSHFIWATCQTGE-STSHVKRHLLSCFPVMGV--PEKVKTDNGPGYCSKAVQKFLNQWKITHTIGILYN 1801 999**********66555..**********************.9999*9999988888888..*********************************** PP rve 102 pqdnGkvErfnrtlkde 118 +q ++++Er+nrtlk++ T230578_1 1802 SQGQAIIERTNRTLKAQ 1818 ***************86 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.8 7.6 3.7e-22 8.7e-19 1 36 [] 755 790 .. 755 790 .. 0.97 Alignments for each domain: == domain 1 score: 66.8 bits; conditional E-value: 3.7e-22 ---B-TTT-SSBS-TTT---SEEGGGEE---XXXX. CS zf-CCHC_5 1 ppglCpRCkkgkHwardChskfdknGnpLsanegrr 36 p+glCp+C+k kHwa++Chskfdk+G+pLs+n++r+ T230578_1 755 PSGLCPKCGKAKHWANQCHSKFDKDGQPLSGNRKRG 790 79*******************************996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.8 2.7 1e-17 2.4e-14 1 37 [. 1655 1691 .. 1655 1692 .. 0.99 Alignments for each domain: == domain 1 score: 52.8 bits; conditional E-value: 1e-17 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+e+H+l+H+Na +L++kF it++q ++IVq+C +Cq T230578_1 1655 AQELHALTHVNAIGLKNKFDITWKQTKNIVQHCTQCQ 1691 9***********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.7 0.0 2.9e-11 6.7e-08 60 141 .. 1571 1651 .. 1564 1653 .. 0.84 Alignments for each domain: == domain 1 score: 32.7 bits; conditional E-value: 2.9e-11 SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 60 sdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++++ni++DS Yvv+ +t++++r+ + + + + p+ n l++ + ++ ++++h+++H++ +k Ne+aD l+++a T230578_1 1571 FNQSINIVSDSAYVVQ-ATKDIERALIKYIMDDQLN-PLFN-LLQQNV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 1651 5789************.9999999977777666666.8999.777777..456888***********98888789*******9986 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.1 1.3e-08 3e-05 34 108 .. 2432 2504 .. 2418 2514 .. 0.84 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 1.3e-08 HHHHHHHHHSSCHH...........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHH CS GP41 34 dkklearvnaleevvlalG.qevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsk 108 +k+ + ++ +l++ ++G + ++sl+ +lrC n CvT+ yn+se W+ v+ hl+g ++ ld+sk T230578_1 2432 IKNWQTKLMILDKL--SFGwERLMSLEYLFQLRCDWNTSDFCVTPQAYNESEhHWDMVRCHLQGGE--DNLTLDISK 2504 57889999999998..77746799***************************************954..444445554 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.4e-05 0.057 4 115 .. 1713 1824 .. 1710 1831 .. 0.91 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.4e-05 DDE_Tnp_IS240 4 wrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkyln 96 w++D v Gk +++ vD + + + + t +k+ l ++ + pe++ tD + y +a++++ ++ + ++ + + + T230578_1 1713 WQMDVMHVPSFGKLSFVHVTVDTYSHFIWATCQTGESTSHVKRHLLSCFPVM-GVPEKVKTDNGPGYcSKAVQKFLNQWKITHTIGILYNSQGQ 1805 888888888899****************************************.*********99999457*******99999******99999* PP DDE_Tnp_IS240 97 nriEsdhrtlKkrlrptrg 115 +iE+ +rtlK++l ++++ T230578_1 1806 AIIERTNRTLKAQLVKQKK 1824 ************9977665 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.1 2.9e-05 0.069 71 98 .. 1179 1206 .. 1174 1207 .. 0.94 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.9e-05 EEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 71 llklDlkkaFdsvpleellrkltafkvp 98 l+ +Dlk++F+++pl++++ +++af++p T230578_1 1179 LIIIDLKDCFFTIPLAKQDFEKFAFTTP 1206 678***********************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.69 # Mc/sec: 13615.89 // Query: T230578_2 [L=3284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-07 31.4 0.4 1.9e-07 30.6 0.4 1.4 1 RVT_thumb Reverse transcriptase thumb domain 2.2e-05 23.9 0.0 3.4e-05 23.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.018 14.9 0.4 0.031 14.2 0.4 1.3 1 Borrelia_orfX Orf-X protein 0.16 12.1 0.1 1.1 9.5 0.1 2.1 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.4 4.7e-11 1.9e-07 1 27 [. 1308 1334 .. 1308 1337 .. 0.94 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 4.7e-11 ES-B----SSSEBHHHHHHHHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWi 27 pqk+++r+d+lk LN+fQkLlgd NWi T230578_2 1308 PQKIEIRKDTLKALNEFQKLLGDTNWI 1334 6*************************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.3 0.0 8.3e-09 3.4e-05 143 222 .] 1229 1301 .. 1229 1301 .. 0.95 Alignments for each domain: == domain 1 score: 23.3 bits; conditional E-value: 8.3e-09 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 fn + ++l+++r +++++++++Y+D il++++++++l ++ +++ ++++gl+i +K++ ++++yLG+++ T230578_2 1229 FNYLSAQALQPVRDKFSDCYIVHYVD-ILCAAETRDKLIDRYTFLQTEVANAGLTITSDKIQTS------TPFRYLGMQV 1301 677778999****************5.*************************************......8******985 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.4 7.6e-06 0.031 52 127 .. 1705 1780 .. 1699 1785 .. 0.84 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 7.6e-06 Borrelia_orfX 52 evyalitsgkqmlltflnldvlnmfm.flltlfpifswplftlenqhvtvfniycfvfllqeslkplkqimdlvila 127 evy+l+ gk m t+l l+ + m l+ + + + e+ + +iy++vfl e++k lkq m +v + T230578_2 1705 EVYVLMCYGKWMSCTYLHLENCHLSM*QLILIHISYG-QPARQEKVLPMLKDIYYLVFLSWEFQKKLKQTMGQVTVV 1780 9******************988888887765554454.5567788888999********************988665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.1 0.00027 1.1 41 81 .. 982 1022 .. 970 1032 .. 0.82 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00027 .EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEEST CS RVP 41 kkaesllqGiggatetkqskaievllieekfrgevsplilp 81 +a++++ Gig+a+e++qs +i+++ + ++++++v+p+i++ T230578_2 982 TQADVSVIGIGTASEVYQSAMILHCPGSDNQESTVQPVITS 1022 46788889999999999999999999999999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.31u 0.31s 00:00:01.62 Elapsed: 00:00:00.76 # Mc/sec: 12361.80 // Query: T230578_3 [L=3283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-69 234.3 1.3 1.8e-69 233.6 0.3 1.8 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein 7.1e-65 217.7 2.8 1.4e-64 216.8 2.8 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.7e-28 98.4 5.6 4.3e-28 97.1 5.6 1.7 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 2.2e-27 94.6 0.2 5.1e-27 93.4 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 8.3e-16 57.3 0.0 2.4e-15 55.8 0.0 1.8 1 RVT_thumb Reverse transcriptase thumb domain 4.7e-10 39.1 0.0 9.1e-10 38.2 0.0 1.5 1 dUTPase dUTPase 2e-06 26.8 1.2 4.5e-06 25.7 1.2 1.6 1 IN_DBD_C Integrase DNA binding domain 8.6e-06 25.6 2.1 0.006 16.3 0.0 2.3 2 GP41 Retroviral envelope protein 1e-05 25.2 2.5 1e-05 25.2 2.5 2.2 2 zf-CCHC Zinc knuckle 0.0014 18.0 0.1 0.0025 17.2 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme ------ inclusion threshold ------ 0.45 10.3 4.9 0.098 12.4 0.4 2.2 2 zf-CCHC_6 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.6 0.3 1.2e-72 1.8e-69 1 205 [] 488 701 .. 488 701 .. 0.95 2 ? -2.0 0.0 1.6 2.4e+03 20 61 .. 1841 1883 .. 1835 1891 .. 0.82 Alignments for each domain: == domain 1 score: 233.6 bits; conditional E-value: 1.2e-72 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllar..vgssqla.aqlwkeeleeeekdrvnraa.gpikissdmllgtgq..llaeqsq 92 +k+Lk++k++v+qyg +sp++++l+d++a++ +p+d+e+l+++ ++s+ l+ +++w+++++e+ +r n+a ++++i++d+llgtg+ ++++q+ T230578_3 488 MKMLKDIKEGVKQYGSNSPYIRTLLDSIAHGNrlTPYDWEILAKSslSSSQYLQfKTWWIDGVQEQ--VRKNQATkPTVNIDADQLLGTGPnwSTINQQS 585 8******************************999**********976677778899**********..66666666***************99999**** PP Gag_p24 93 lmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplr....knstl.ed 187 +mqn e++eqvr+++l+a+ ki+++g+ +++irQG+kEpy+dfvaRl++a++k+++d++a +v+v+ +ayeNANpeCq+++kpl+ ++ ++ + T230578_3 586 VMQN-EAIEQVRAICLRAWGKIQDPGTAF-PINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPECQSAIKPLKgkvpAGVDViTE 683 ****.************************.9*********************************************************9998788888** PP Gag_p24 188 mlraCqgvggavhkarvl 205 +++aC+g+gga+hka+++ T230578_3 684 YVKACDGIGGAMHKAMLM 701 ****************98 PP == domain 2 score: -2.0 bits; conditional E-value: 1.6 Gag_p24 20 eviqlidalaeqalpkdlekllar.vgssqlaaqlwkeeleee 61 +++++++ +q ++ ++l+ + + ++++ +wk++ + T230578_3 1841 YTLNVLNIYRNQTTTSAEQHLTGKrNSPHEGKLIWWKDNKNKT 1883 88999999999**9999999996547789999****9987766 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 216.8 2.8 9.2e-68 1.4e-64 5 138 .. 2033 2162 .. 2033 2162 .. 0.98 Alignments for each domain: == domain 1 score: 216.8 bits; conditional E-value: 9.2e-68 HERV-K_env_2 5 mdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqdfs 99 mdnpiev vn+s wvpgp+dd+cpa+pe egmm+nisigy ypp+clg+apgclmp+ qnwlvevptvs srftyhmvsgms ++n lqd s T230578_3 2033 MDNPIEVDVNNSAWVPGPTDDCCPAQPE-EGMMMNISIGYPYPPVCLGKAPGCLMPTTQNWLVEVPTVSATSRFTYHMVSGMS---QINNLQDPS 2123 9**************************7.6****************************************************9...79******* PP HERV-K_env_2 100 yqrslkfrpkgkpcpkeipkeskntevlvweecvansav 138 yqrsl+ rpkgk+cpkeipkesk evlv ecva++av T230578_3 2124 YQRSLQCRPKGKACPKEIPKESKSPEVLVCGECVADTAV 2162 ***********************************9987 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.1 5.6 2.9e-31 4.3e-28 6 87 .] 1937 2019 .. 1933 2019 .. 0.95 Alignments for each domain: == domain 1 score: 97.1 bits; conditional E-value: 2.9e-31 HERV-K_REC 6 thkmnkmvtseeqmklpstkkaepptw.aqlkkltqlatk.ylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t ++nkmv seeq klps k ae p aqlkkltqla k lentkvt tpe mllaalmivs vv+l+ +a+++aa+++y+a T230578_3 1937 TRQVNKMVISEEQKKLPSIKEAELP-I*AQLKKLTQLAKKkSLENTKVTPTPENMLLAALMIVSTVVSLPKSAGAAAANYTYWA 2019 7899*******************99.888*********7527*****************************************7 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.4 0.2 3.4e-30 5.1e-27 3 84 .] 137 217 .. 135 217 .. 0.97 Alignments for each domain: == domain 1 score: 93.4 bits; conditional E-value: 3.4e-30 Gag_p10 3 elFlkalkaLlkerGikvsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevLd 84 +++l+++k Ll++ G++ s+++l++++qt+e++cPWFpe+Gtldl++W+k+gkelk qa ++g+ ipl+v++ w++i++ L+ T230578_3 137 ASYLSFIKILLRRGGVRASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELK-QANREGKIIPLTVWNDWAIIKATLE 217 679*****************************************************.**********************985 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.8 0.0 1.6e-18 2.4e-15 22 65 .. 1335 1378 .. 1334 1379 .. 0.97 Alignments for each domain: == domain 1 score: 55.8 bits; conditional E-value: 1.6e-18 HHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 22 gdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 gdINWi p+lgi+t+ +++LF+ LrGds+l+s+r+LT+eA++++ T230578_3 1335 GDINWIWPTLGIPTYAMSNLFSFLRGDSELNSERTLTPEATKEI 1378 9****************************************997 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 0.0 6.2e-13 9.1e-10 6 127 .. 834 946 .. 829 948 .. 0.80 Alignments for each domain: == domain 1 score: 38.2 bits; conditional E-value: 6.2e-13 EBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEE..E-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEE CS dUTPase 6 ptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalil..pRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifa 102 + r++++s Dl++++ + + p + + +p +++ +lp+g ++ +RS+l++kg+ +++gvi sdy+G ++ l+ ++ + + + gdRiAqL++ T230578_3 834 LSRATAGSTAVDLCSTQMVFLLPgKPPQKIPRGVYGPLPEG---RVGl*GRSSLNLKGVQIHTGVIYSDYKG--GIQLVISSTVPRSANPGDRIAQLLLL 928 66788888888999999999888778889999999999874...555489**********************..6666667888999************* PP EBECGEEEEESSTTTESSBTTXTTT CS dUTPase 103 riltaeleevetlkatergeggfgs 127 ++++ +++++ +ggfgs T230578_3 929 PYVK----IG---ENKKERTGGFGS 946 9999....33...345555666665 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 1.2 3.1e-09 4.5e-06 7 48 .. 1876 1916 .. 1872 1918 .. 0.91 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 3.1e-09 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T230578_3 1876 WKDNKNKTWEM-GKVITWGRGFACVSPGENQLPVWIPTRHLK 1916 99999999984.79*************************998 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 4.1e-06 0.006 2 53 .. 2399 2450 .. 2398 2473 .. 0.94 2 ! 8.3 0.6 0.0012 1.8 111 201 .] 2607 2695 .. 2604 2695 .. 0.70 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 4.1e-06 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH...... CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGq 53 a ++l +vq+a+ vn+ +kn k + Q +id+kl +++n l + v+ +G+ T230578_3 2399 AGIALHSSVQTAEYVNDWQKNSSKLWNSQIQIDQKLANQINDLRQTVIWMGE 2450 5689********************************************9998 PP == domain 2 score: 8.3 bits; conditional E-value: 0.0012 HHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX.........XXX.......XXXXXX CS GP41 111 neiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslaksl.qqvraevqllllkkkkg 201 ++i ++++++ + ++ +++ k a sl n ++ Wv+ i+ ++ i++ + ++v l +lll+ ++ l ++ qq a v + +l k+kg T230578_3 2607 EKIFEASKAHLNLVPGTETIVKAADSLTNLKPV-TWVKSIRSFT-IVNFIL-ILVCLFCLLLVYRCIQQLQRDSnQQEWAIVTMVVLSKRKG 2695 578899999999999999999999999876655.8***877665.555544.5566666666654577776655055556667777877776 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 2.5 7e-09 1e-05 1 17 [. 719 735 .. 719 735 .. 0.96 2 ? -1.5 0.3 2 2.9e+03 2 7 .. 2316 2321 .. 2315 2321 .. 0.87 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 7e-09 SCTSSSSSSSSTTTTST CS zf-CCHC 1 rkCynCGepGHiardCp 17 +kCynCG++GH++r Cp T230578_3 719 KKCYNCGQIGHLKRSCP 735 59**************9 PP == domain 2 score: -1.5 bits; conditional E-value: 2 CTSSSS CS zf-CCHC 2 kCynCG 7 C nCG T230578_3 2316 ICENCG 2321 6****9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.1 1.7e-06 0.0025 117 156 .. 1206 1246 .. 1201 1256 .. 0.78 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.7e-06 .......TEEEEESB--ST-TTHHHHHHH.HHHHHHTT-T. CS RVT_1 117 rvngeesegryekkglpqGsvlSPllfnl.fmnellrelrk 156 ++n++e+ +r+++k+lpqG+ +S ++++l ++n+l+ ++++ T230578_3 1206 SLNNKEPATRFQWKVLPQGMLNSSTICQLkLCNQLETSFQT 1246 568999**********************8456777766665 PP >> zf-CCHC_6 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.4 6.6e-05 0.098 3 20 .. 720 735 .. 719 750 .. 0.87 2 ? -3.0 0.4 4.2 6.2e+03 4 10 .. 2317 2323 .. 2316 2323 .. 0.91 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.6e-05 zf-CCHC_6 3 KCknCGAFGHtarskrCP 20 KC nCG +GH +rs CP T230578_3 720 KCYNCGQIGHLKRS--CP 735 9***********66..76 PP == domain 2 score: -3.0 bits; conditional E-value: 4.2 zf-CCHC_6 4 CknCGAF 10 C nCG F T230578_3 2317 CENCGMF 2323 *****87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 630 (0.0386361); expected 326.1 (0.02) Passed bias filter: 377 (0.0231203); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 1.63u 0.35s 00:00:01.98 Elapsed: 00:00:00.76 # Mc/sec: 12358.03 // Query: T089845_1 [L=2546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.70 # Mc/sec: 10405.25 // Query: T089845_2 [L=2546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.62 # Mc/sec: 11747.86 // Query: T089845_3 [L=2545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 11743.25 // Query: T332673_1 [L=804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3898.49 // Query: T332673_2 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 3534.23 // Query: T332673_3 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 4417.78 // Query: T223035_1 [L=2955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-08 33.3 0.2 4.3e-08 32.8 0.2 1.2 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.2 2.6e-12 4.3e-08 122 174 .. 1 53 [. 1 65 [. 0.92 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 2.6e-12 BAR_3_WASP_bdg 122 aeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklss 174 a q++kDl++ +++l +G+ +n+ Dii++hk+al+kv e ++v+egk + T223035_1 1 ASQSRKDLDPAMDLLVLSQGHKTNILDIIHIHKEALTKVTENRQHVAEGKTEV 53 679*********************************************98765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.68 # Mc/sec: 12431.99 // Query: T223035_2 [L=2955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.80 # Mc/sec: 10567.19 // Query: T223035_3 [L=2954] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-11 43.6 0.4 2.3e-06 27.2 0.0 2.2 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.0 1.4e-10 2.3e-06 2 55 .. 2597 2649 .. 2596 2654 .. 0.88 2 ! 14.4 0.1 1.1e-06 0.019 95 130 .. 2692 2727 .. 2686 2734 .. 0.87 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 1.4e-10 DDE_1 2 erltvllcanaagsekLkplvigkgksprafknektkkkldveyksnr.kawlts 55 + lt+ll ana g+ Lkp+ i+++++pra kn +k+ + y+ n+ kaw+t+ T223035_3 2597 DMLTLLLRANAVGDVNLKPMMIYYSENPRALKN--YDKTQLCLYSTNGnKAWMTD 2649 679******************************..777777888888538***97 PP == domain 2 score: 14.4 bits; conditional E-value: 1.1e-06 DDE_1 95 ecelqniklvflPasstsllqPldqgvvselKarYr 130 + ++++ ++vf+P++ t +l Pldq ++s++K++ T223035_3 2692 TEMYKELNIVFMPTNPTFILVPLDQRIISTFKSYHL 2727 4578999*************************9765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2954 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.78 # Mc/sec: 10834.48 // Query: T230056_1 [L=2490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.77 # Mc/sec: 9251.26 // Query: T230056_2 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.81 # Mc/sec: 8790.87 // Query: T230056_3 [L=2489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.59 # Mc/sec: 12068.82 // Query: T097014_1 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-05 22.4 0.0 0.00013 21.7 0.0 1.1 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.0 8.2e-09 0.00013 122 155 .. 273 306 .. 268 311 .. 0.89 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 8.2e-09 Gag_p24 122 esladirQGpkEpyqdfvaRlekalrkeladeka 155 +s + +rQGp Epy+df+ l++a++k + d +a T097014_1 273 TSCSMVRQGPSEPYPDFITHLQDAAQKAILDSHA 306 47899**********************9988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 10268.18 // Query: T097014_2 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-51 172.0 0.2 1.2e-50 171.4 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 0.00066 19.5 0.7 0.0013 18.7 0.7 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 171.4 0.2 1.5e-54 1.2e-50 1 168 [. 431 602 .. 431 603 .. 0.89 Alignments for each domain: == domain 1 score: 171.4 bits; conditional E-value: 1.5e-54 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnw.lvevptvspisrftyhmvsgmslrp..rvny 94 +vtw+d p+evyvndsvw+pgp+d r p++peeegm++n+sigy++ppiclg a gcl q +v vp s+ + h +sg +++ +y T097014_2 431 PVTWLDSPVEVYVNDSVWMPGPTDKRGPTHPEEEGMLMNVSIGYHFPPICLGLAAGCLNYNKQ-S*MVYVPAH-NGSKASIHAISGRTFQSwdTTKY 525 69********************************************************87665.455789976.4689999*****99886225677 PP HERV-K_env_2 95 lqd...fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 l+ +++++ kf+p+ kpc ++ k s + e l we+c+ansav+lqnn +g iidwaprg+f nc+gq + c T097014_2 526 LEHsyvMTHHQINKFKPNKKPCLRQATKLSGKLEGLTWEDCIANSAVVLQNNSYGIIIDWAPRGRFAVNCTGQHEDC 602 7642223456678************************************************************9998 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.7 1.5e-07 0.0013 24 87 .] 360 421 .. 357 421 .. 0.85 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.5e-07 HERV-K_REC 24 tkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 +++a pptw q+k+++ +a l t +++a + ++s+ v+l++ e +++y++ T097014_2 360 ARQATPPTWGQMKRVAPIAEENLRSQNKPLTISNLMVAMMAVISLAVSLAVA--ETDQNYTYWP 421 5789*******************99999999888888888899999998765..5556888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 10428.62 // Query: T097014_3 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-14 54.0 5.8 3.3e-14 53.1 5.8 1.4 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.049 11.7 0.1 0.07 11.2 0.1 1.1 1 Fusion_gly Fusion glycoprotein F0 Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.1 5.8 4.1e-18 3.3e-14 2 110 .. 801 908 .. 800 911 .. 0.93 Alignments for each domain: == domain 1 score: 53.1 bits; conditional E-value: 4.1e-18 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnnt 100 aav+l ++q+a +v++ +kn k + Q +id+kl +++n l + v+ +G+ +++l+++++++C n C+T+ yna+e W +++hl+g + T097014_3 801 AAVALHSSIQTAGFVDSWQKNSSKLWNSQSQIDQKLANQINDLCQTVIWMGDWIMNLEHRIQMQCDWNTSDFCITHSSYNATEhHWAMIRHHLQGK--ED 898 799*******************************************************************************************95..55 PP HHHHHHHHHH CS GP41 101 evsldlsklh 110 ++ ld++kl+ T097014_3 899 NLTLDIAKLK 908 6666666665 PP >> Fusion_gly Fusion glycoprotein F0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 8.5e-06 0.07 81 157 .. 774 854 .. 750 882 .. 0.70 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 8.5e-06 XSSSSXCCCXXEEEHHHHXEEEHHHHHHHHHHHHHHHHHHHHHCC.HHH..HHCHHCCC.CCCCHCCCHCCCCCCCCHHHH CS Fusion_gly 81 sskrkkrflGvvlgaiAlgvAtaAqitAgiAlakalknaeeiakl.kes..lektnkAv.eklqngvselvlavnalqdyi 157 +r krf+ ++++i +A+ A +A++Al+ +++ a+ +++ k+s l ++ + +kl n + l v + d+i T097014_3 774 ILNRSKRFIFTLIAVILGLIAVTATAAAAVALHSSIQTAGFVDSWqKNSskLWNSQSQIdQKLANQINDLCQTVIWMGDWI 854 56799****999*9766568*******************999876244422334444443456666666666666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 10108.27 // Query: T229054_1 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-10 38.9 0.0 7.9e-10 38.4 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.4 0.0 4.8e-14 7.9e-10 112 210 .] 62 231 .. 49 231 .. 0.95 Alignments for each domain: == domain 1 score: 38.4 bits; conditional E-value: 4.8e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke....................................................... 156 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ T229054_1 62 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekvlr*rlsililksemlqnlnllehqpdt*rkcsleegplvrpasrrttpqt 160 89********************.9**************************************************************************** PP GAIN 157 ...................snseg.evvvvfvlYrnLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 ++ +g + + +++Y + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229054_1 161 trpgpgtegeapisr*krhPDDTG*FTFTLVIVYCTPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 231 ******************75645****************9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6498.17 // Query: T229054_2 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.003 18.1 0.1 0.01 16.4 0.1 2.0 1 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 6.1e-07 0.01 10 42 .] 1067 1100 .. 1064 1100 .. 0.87 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 6.1e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229054_2 1067 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1100 579********8544.6***************766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 6938.72 // Query: T229054_3 [L=1431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.62 # Mc/sec: 6602.98 // Query: T353484_1 [L=1320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1368 (0.0838955); expected 326.1 (0.02) Passed bias filter: 302 (0.0185208); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.67 # Mc/sec: 5636.26 // Query: T353484_2 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1526 (0.0935852); expected 326.1 (0.02) Passed bias filter: 346 (0.0212192); expected 326.1 (0.02) Passed Vit filter: 173 (0.0106096); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.83 # Mc/sec: 4546.31 // Query: T353484_3 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1373 (0.0842021); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 6738.28 // Query: T195963_1 [L=2170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2170 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.50 # Mc/sec: 12416.00 // Query: T195963_2 [L=2169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 548 (0.0336073); expected 326.1 (0.02) Passed bias filter: 305 (0.0187048); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.47 # Mc/sec: 13202.43 // Query: T195963_3 [L=2169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.49 # Mc/sec: 12663.55 // Query: T293101_1 [L=2313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.49 # Mc/sec: 13504.29 // Query: T293101_2 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.50 # Mc/sec: 13228.48 // Query: T293101_3 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.49 # Mc/sec: 13498.45 // Query: T124831_1 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45 # Mc/sec: 5550.01 // Query: T124831_2 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5197.17 // Query: T124831_3 [L=872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5197.17 // Query: T053195_1 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.47 # Mc/sec: 5459.92 // Query: T053195_2 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 5346.18 // Query: T053195_3 [L=897] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (897 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 5346.18 // Query: T158253_1 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4974.34 // Query: T158253_2 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4773.66 // Query: T158253_3 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4773.66 // Query: T324666_1 [L=3147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-15 56.4 165.3 0.0042 17.1 16.1 14.8 12 DUF4705 Domain of unknown function (DUF4705) ------ inclusion threshold ------ 0.075 13.4 0.3 16 6.0 0.1 2.7 2 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.2 4.6 1.8e-05 0.14 25 50 .] 325 350 .. 323 350 .. 0.88 2 ! 11.5 11.4 2.9e-05 0.23 2 41 .. 376 414 .. 375 426 .. 0.93 3 ? -3.5 0.0 1.4 1.2e+04 7 28 .. 913 940 .. 912 940 .. 0.84 4 ? -3.6 1.4 1.5 1.2e+04 38 49 .. 1285 1296 .. 1278 1302 .. 0.58 5 ! 12.0 14.0 2e-05 0.16 3 38 .. 1326 1372 .. 1324 1387 .. 0.73 6 ! 16.7 6.5 7.1e-07 0.0058 23 50 .] 1690 1717 .. 1689 1717 .. 0.95 7 ! 17.1 16.2 5.5e-07 0.0044 2 46 .. 1743 1790 .. 1742 1804 .. 0.92 8 ? 0.1 0.3 0.11 8.9e+02 6 29 .. 2007 2032 .. 2005 2054 .. 0.66 9 ! 11.8 12.3 2.3e-05 0.19 5 48 .. 2127 2189 .. 2124 2190 .. 0.92 10 ! 7.2 3.4 0.00065 5.3 8 41 .. 2171 2204 .. 2165 2210 .. 0.82 11 ! 9.8 5.5 0.0001 0.84 23 50 .] 2372 2399 .. 2371 2399 .. 0.95 12 ! 17.1 16.1 5.2e-07 0.0042 2 46 .. 2425 2472 .. 2424 2484 .. 0.91 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 1.8e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+sCL T324666_1 325 ASASRMAASAGPAVPPGCISRPTSCL 350 5666679******************9 PP == domain 2 score: 11.5 bits; conditional E-value: 2.9e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 gp Pasr+p q +++ q+ + +p+ +Lp A +Gp lpp+ T324666_1 376 GPHPASRWPVQ-SQLWQQKSVCKPRCGLPGAYPGPALPPL 414 899********.*************************875 PP == domain 3 score: -3.5 bits; conditional E-value: 1.4 DUF4705 7 srrpLqa......paslqasglsrpsaq 28 srrpL a l a++ls ++a+ T324666_1 913 SRRPLSAwegpv*GKGLMATSLSVGGAC 940 7999999999888888889988888877 PP == domain 4 score: -3.6 bits; conditional E-value: 1.5 DUF4705 38 lppagLsrPssC 49 l +gL rPs++ T324666_1 1285 LKHGGLCRPSCS 1296 445566666432 PP == domain 5 score: 12.0 bits; conditional E-value: 2e-05 DUF4705 3 pAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl 38 p Pas++p +++l+++g srps++++ As+G+++ T324666_1 1326 PHPASQWPAPRvpalaaeerqqAPLLPPRGVSRPSSRPTTASRGQVP 1372 5566666533355555566666***********************98 PP == domain 6 score: 16.7 bits; conditional E-value: 7.1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +srPssCL T324666_1 1690 GPASASLMAASAGPAVPPGCISRPSSCL 1717 5799***********************9 PP == domain 7 score: 17.1 bits; conditional E-value: 5.5e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324666_1 1743 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1790 899********.*************************988877776666 PP == domain 8 score: 0.1 bits; conditional E-value: 0.11 DUF4705 6 asrrpLqa......paslqasglsrpsaqL 29 a+rr+Lq+ + + g+s+++ + T324666_1 2007 AGRRRLQDdlglqrS----PGGPSWARRSP 2032 89*****96533330....44555554444 PP == domain 9 score: 11.8 bits; conditional E-value: 2.3e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324666_1 2127 PPSWRPLQAqlfllaaslgpaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 2189 779*****************************9643399**********************99 PP == domain 10 score: 7.2 bits; conditional E-value: 0.00065 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.ppa 41 + Lq + l++ gl +ps++ AsaGp +++ T324666_1 2171 SQALQ-AHILPPGGLYSPSSGSRRASAGPAVaSQG 2204 67899.99999999999999999999999884443 PP == domain 11 score: 9.8 bits; conditional E-value: 0.0001 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +sr ssCL T324666_1 2372 GPASASLMAASAGPAVPPGCISRLSSCL 2399 5799***********************9 PP == domain 12 score: 17.1 bits; conditional E-value: 5.2e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324666_1 2425 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 2472 899********.*************************988877766666 PP >> Ribosomal_S3_C Ribosomal protein S3, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.0046 37 23 48 .. 1568 1593 .. 1563 1598 .. 0.84 2 ? 6.0 0.1 0.0019 16 23 48 .. 2250 2275 .. 2245 2280 .. 0.85 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0046 Ribosomal_S3_C 23 mkagakGikiqvsGrLggaeiarsek 48 + ag +G ++ sGrLg ae ar+ k T324666_1 1568 LLAGRQGRETPTSGRLGPAEVARRPK 1593 45799******************876 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0019 Ribosomal_S3_C 23 mkagakGikiqvsGrLggaeiarsek 48 + ag +G ++ sGrLg ae ar+ k T324666_1 2250 LLAGRQGRETLTSGRLGPAEVARRPK 2275 45899******************876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 16369.15 // Query: T324666_2 [L=3147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 18.8 10.2 0.0012 18.8 10.2 15.7 14 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 4.0 3.4e-05 0.56 6 27 .. 328 361 .. 324 364 .. 0.91 2 ? -1.7 10.1 0.2 3.2e+03 9 50 .] 372 423 .. 369 423 .. 0.60 3 ? 0.1 5.0 0.053 8.6e+02 3 32 .. 398 426 .. 396 433 .. 0.89 4 ? -1.6 6.0 0.19 3.1e+03 13 27 .. 1289 1310 .. 1279 1317 .. 0.67 5 ! 4.5 14.1 0.0024 38 11 46 .. 1323 1373 .. 1306 1377 .. 0.81 6 ? 0.1 0.3 0.055 8.9e+02 6 29 .. 1574 1599 .. 1572 1621 .. 0.66 7 ! 9.7 14.5 5.3e-05 0.87 5 48 .. 1694 1756 .. 1691 1758 .. 0.92 8 ! 7.9 8.1 0.0002 3.3 2 32 .. 1764 1793 .. 1763 1802 .. 0.93 9 ? -0.6 0.5 0.087 1.4e+03 35 49 .. 2124 2138 .. 2122 2139 .. 0.83 10 ! 18.8 10.2 7.6e-08 0.0012 7 50 .] 2139 2180 .. 2133 2180 .. 0.85 11 ! 5.7 3.7 0.00097 16 3 33 .. 2187 2216 .. 2185 2219 .. 0.91 12 ! 10.3 13.9 3.5e-05 0.57 5 48 .. 2376 2438 .. 2373 2440 .. 0.92 13 ! 3.0 13.7 0.0067 1.1e+02 2 33 .. 2446 2476 .. 2445 2498 .. 0.86 14 ? -1.4 0.3 0.16 2.6e+03 2 18 .. 2479 2497 .. 2478 2506 .. 0.71 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 3.4e-05 DUF4705 6 asrrpLqa............paslqasglsrpsa 27 +rpLqa pas+qas++++++ T324666_2 328 PAWRPLQAqlfllaaslgphPASQQASSFGSAPT 361 569****************************996 PP == domain 2 score: -1.7 bits; conditional E-value: 0.2 DUF4705 9 rpLqa....pasl..qasglsrpsaqLpvAsaGpkl....ppagLsrPssCL 50 + Lqa p l ++sg+ r+sa + vAs+G p gL Ps CL T324666_2 372 QALQAhilpPGGLysPSSGSRRASASPAVASQGHIQaqlsPHCGLPGPSPCL 423 5577444432223225566667777777777776556677888888888887 PP == domain 3 score: 0.1 bits; conditional E-value: 0.053 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvA 32 pA as+ + q +++ ++ gl ps +L +A T324666_2 398 PAVASQGHIQ-AQLSPHCGLPGPSPCLLPA 426 9*********.9999999999999998877 PP == domain 4 score: -1.6 bits; conditional E-value: 0.19 DUF4705 13 a.......paslqasglsrpsa 27 a pas+qas +++++a T324666_2 1289 AsagpavpPASQQASTFGSAPA 1310 2445556688888888888887 PP == domain 5 score: 4.5 bits; conditional E-value: 0.0024 DUF4705 11 Lqa...........paslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 Lqa +++ q+ + srp+ +Lp As+Gp l ppa+ s P T324666_2 1323 LQAhilppsglhpeSQLWQQKSVSRPRCCLPGASPGPALapprPPAAKSLP 1373 6667777777775566779********************988877776666 PP == domain 6 score: 0.1 bits; conditional E-value: 0.055 DUF4705 6 asrrpLqa......paslqasglsrpsaqL 29 a+rr+Lq+ + + g+s+++ + T324666_2 1574 AGRRRLQDdlglqrS----PGGPSWARRSP 1599 89*****96533330....44555554444 PP == domain 7 score: 9.7 bits; conditional E-value: 5.3e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324666_2 1694 PPSWRPLQAqlfllaaslgpaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 1756 779*****************************9643399**********************99 PP == domain 8 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324666_2 1764 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1793 9**********.***************9888 PP == domain 9 score: -0.6 bits; conditional E-value: 0.087 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324666_2 2124 GLCLPHGGLCRPSCS 2138 777899******775 PP == domain 10 score: 18.8 bits; conditional E-value: 7.6e-08 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324666_2 2139 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 2180 566888.99999984.34479**********************9 PP == domain 11 score: 5.7 bits; conditional E-value: 0.00097 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAs 33 pA a + + q +++l+++g s+++a++ A+ T324666_2 2187 PALAAEERQQ-APLLPPRGCSSARAGPVQAT 2216 9999999999.***************99887 PP == domain 12 score: 10.3 bits; conditional E-value: 3.5e-05 DUF4705 5 PasrrpLqa............paslqasglsrpsa..qLpvAsaGpkl.....ppagLsrPss 48 P s+rpLqa pas+qas+++++++ + p ++ + l pp+gL +Pss T324666_2 2376 PPSWRPLQAqlfllaaslgsaPASQQASSFGSAPSsvCRPRSFCSQALqahilPPGGLYSPSS 2438 779*****************************9643399**********************99 PP == domain 13 score: 3.0 bits; conditional E-value: 0.0067 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAs 33 gpA as+ +Lq +++ ++ gl rps +L +A T324666_2 2446 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPAA 2476 9**********.*************9986653 PP == domain 14 score: -1.4 bits; conditional E-value: 0.16 DUF4705 2 gpAPasrrpLqa..paslq 18 +pAP sr+p a a l+ T324666_2 2479 RPAPPSRWPVEAgaHADLS 2497 69*******8875544455 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.55 # Mc/sec: 16369.15 // Query: T324666_3 [L=3146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-31 107.2 181.6 5.2e-05 23.2 9.3 15.8 15 DUF4705 Domain of unknown function (DUF4705) ------ inclusion threshold ------ 3.1 7.4 6.2 2.1e+02 1.6 0.1 4.2 4 PTP_N Protein tyrosine phosphatase N terminal Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.7 0.19 1.5e+03 35 49 .. 324 338 .. 320 339 .. 0.83 2 ! 21.7 4.2 1.9e-08 0.00015 26 50 .] 356 380 .. 334 380 .. 0.81 3 ! 14.4 13.1 3.6e-06 0.03 3 38 .. 387 421 .. 385 439 .. 0.90 4 ! 23.2 9.3 6.4e-09 5.2e-05 5 50 .] 1284 1329 .. 1281 1329 .. 0.85 5 ! 8.7 7.3 0.00023 1.9 2 32 .. 1347 1376 .. 1346 1385 .. 0.92 6 ? -0.6 0.5 0.17 1.4e+03 35 49 .. 1691 1705 .. 1689 1706 .. 0.83 7 ! 18.8 10.2 1.5e-07 0.0012 7 50 .] 1706 1747 .. 1700 1747 .. 0.85 8 ! 17.2 7.8 5e-07 0.0041 3 38 .. 1754 1788 .. 1752 1797 .. 0.88 9 ? -0.3 1.1 0.14 1.1e+03 2 21 .. 1797 1818 .. 1796 1825 .. 0.73 10 ! 16.7 6.5 7.1e-07 0.0058 23 50 .] 2122 2149 .. 2121 2149 .. 0.95 11 ! 16.6 8.8 7.3e-07 0.006 2 46 .. 2175 2215 .. 2174 2222 .. 0.90 12 ? -0.6 0.5 0.17 1.4e+03 35 49 .. 2373 2387 .. 2371 2388 .. 0.83 13 ! 18.8 10.2 1.5e-07 0.0012 7 50 .] 2388 2429 .. 2382 2429 .. 0.85 14 ! 19.3 9.3 1.1e-07 0.00091 3 47 .. 2436 2484 .. 2434 2487 .. 0.90 15 ? -1.4 0.6 0.31 2.5e+03 6 23 .. 2688 2704 .. 2686 2716 .. 0.60 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.19 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324666_3 324 GLCLPHGGLCRPSCS 338 77789999****775 PP == domain 2 score: 21.7 bits; conditional E-value: 1.9e-08 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T324666_3 356 LAQLPPAFVDPEVSAAKLFRPTSCL 380 58**********************9 PP == domain 3 score: 14.4 bits; conditional E-value: 3.6e-06 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + +Lq +++ +++g srps+ +++As+G+++ T324666_3 387 PALAAEERLQ-APLWPPRGISRPSSPPTAASRGQVP 421 9*********.***********************98 PP == domain 4 score: 23.2 bits; conditional E-value: 6.4e-09 DUF4705 5 PasrrpLqa.....paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 P +rpLqa p+s qa aqLp+A+++p+ + a+L+rP+sCL T324666_3 1284 PQAWRPLQAqlfllPPSKQAL-----LAQLPPAFVDPEVSAAKLFRPTSCL 1329 6679****8766666666666.....89**********************9 PP == domain 5 score: 8.7 bits; conditional E-value: 0.00023 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvA 32 gpA as+ +Lq +++ ++ gl rps +L +A T324666_3 1347 GPAVASQGRLQ-AQLSPHHGLPRPSPCLLPA 1376 9**********.**************99877 PP == domain 6 score: -0.6 bits; conditional E-value: 0.17 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324666_3 1691 GLCLPHGGLCRPSCS 1705 777899******775 PP == domain 7 score: 18.8 bits; conditional E-value: 1.5e-07 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324666_3 1706 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 1747 566888.99999984.34479**********************9 PP == domain 8 score: 17.2 bits; conditional E-value: 5e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a + + q +++l+++g srps++++ As+G+++ T324666_3 1754 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVP 1788 9999999999.***********************97 PP == domain 9 score: -0.3 bits; conditional E-value: 0.14 DUF4705 2 gpAPasrrpLqa..paslqasg 21 gpAP sr+p a a l+ +g T324666_3 1797 GPAPPSRWPVEAgaHADLSRRG 1818 9********9875545555555 PP == domain 10 score: 16.7 bits; conditional E-value: 7.1e-07 DUF4705 23 srpsaqLpvAsaGpklppagLsrPssCL 50 + +sa L +AsaGp pp+ +srPssCL T324666_3 2122 GPASASLMAASAGPAVPPGCISRPSSCL 2149 5799***********************9 PP == domain 11 score: 16.6 bits; conditional E-value: 7.3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 gp Pasr+p q +++ q+ + srp+ +Lp A +p+l gL rP T324666_3 2175 GPHPASRWPVQ-SQLWQQKSVSRPRCCLPGAVLPPEL---GLYRP 2215 899********.**********************999...55555 PP == domain 12 score: -0.6 bits; conditional E-value: 0.17 DUF4705 35 GpklppagLsrPssC 49 G lp +gL rPs++ T324666_3 2373 GLCLPHGGLCRPSCS 2387 777899******775 PP == domain 13 score: 18.8 bits; conditional E-value: 1.5e-07 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 s+ +L +++l++s+ aqLp+A+++p+ + a+L+rP+sCL T324666_3 2388 SWLHLS-AQLLPPSR-QALLAQLPPAFVDPEVSAAKLFRPTSCL 2429 566888.99999984.34479**********************9 PP == domain 14 score: 19.3 bits; conditional E-value: 1.1e-07 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.....ppagLsrPs 47 pA a + + q +++l+++g srps++++ As+G+++ p gL+ P+ T324666_3 2436 PALAAEERQQ-APLLPPRGVSRPSSRPTTASRGQVPacsrqPAYGLLLPH 2484 9999999999.************************999998888999887 PP == domain 15 score: -1.4 bits; conditional E-value: 0.31 DUF4705 6 asrrpLqapaslqasgls 23 a+rr+Lq+ lq s ++ T324666_3 2688 AGRRRLQDDLGLQRS-PG 2704 89*****84344322.33 PP >> PTP_N Protein tyrosine phosphatase N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.1 0.025 2.1e+02 9 18 .. 362 371 .. 362 373 .. 0.94 2 ? 1.6 0.1 0.025 2.1e+02 9 18 .. 1311 1320 .. 1311 1322 .. 0.94 3 ? 1.6 0.1 0.025 2.1e+02 9 18 .. 1729 1738 .. 1729 1740 .. 0.94 4 ? 1.6 0.1 0.025 2.1e+02 9 18 .. 2411 2420 .. 2411 2422 .. 0.94 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.025 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324666_3 362 AFVDPEVSAA 371 9*******97 PP == domain 2 score: 1.6 bits; conditional E-value: 0.025 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324666_3 1311 AFVDPEVSAA 1320 9*******97 PP == domain 3 score: 1.6 bits; conditional E-value: 0.025 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324666_3 1729 AFVDPEVSAA 1738 9*******97 PP == domain 4 score: 1.6 bits; conditional E-value: 0.025 PTP_N 9 AFLDteVfVt 18 AF D+eV+++ T324666_3 2411 AFVDPEVSAA 2420 9*******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.55 # Mc/sec: 16363.95 // Query: T278151_1 [L=1712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 723 (0.0443395); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.54 # Mc/sec: 9069.89 // Query: T278151_2 [L=1712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 578 (0.0354471); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 9069.89 // Query: T278151_3 [L=1711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 726 (0.0445235); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 8899.78 // Query: T251556_1 [L=5996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.60 # Mc/sec: 28589.23 // Query: T251556_2 [L=5996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.31s 00:00:01.68 Elapsed: 00:00:00.59 # Mc/sec: 29073.79 // Query: T251556_3 [L=5996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.60 # Mc/sec: 28589.23 // Query: T316395_1 [L=2419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.77 # Mc/sec: 8987.46 // Query: T316395_2 [L=2418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1477 (0.0905802); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.23u 0.44s 00:00:02.67 Elapsed: 00:00:00.85 # Mc/sec: 8138.22 // Query: T316395_3 [L=2418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 994 (0.0609592); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.34s 00:00:02.25 Elapsed: 00:00:00.91 # Mc/sec: 7601.63 // Query: T131478_1 [L=415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (415 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 1978.74 // Query: T131478_2 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 2077.87 // Query: T131478_3 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-08 32.4 0.4 4.8e-08 32.1 0.4 1.1 1 DUF4455 Domain of unknown function (DUF4455) Domain annotation for each model (and alignments): >> DUF4455 Domain of unknown function (DUF4455) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.1 0.4 2.9e-12 4.8e-08 382 424 .. 371 413 .. 369 414 .] 0.95 Alignments for each domain: == domain 1 score: 32.1 bits; conditional E-value: 2.9e-12 DUF4455 382 deenqakeaaLdklldklrqasteekLketlekalqlLddikk 424 + + q +ea++d+ll+++r s+ee Lk +l+ka+++L+++k+ T131478_3 371 KSRSQVREAQFDELLNQMRHRSHEEILKFHLRKAKDFLKNMKS 413 5789*************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.52 # Mc/sec: 2277.66 // Query: T293995_1 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 5491.93 // Query: T293995_2 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.79 # Mc/sec: 4588.19 // Query: T293995_3 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.62 # Mc/sec: 5841.63 // Query: T124684_1 [L=831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 4754.70 // Query: T124684_2 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.67 # Mc/sec: 3544.01 // Query: T124684_3 [L=830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 3957.48 // Query: T249690_1 [L=3741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 495 (0.0303569); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.40s 00:00:01.97 Elapsed: 00:00:00.84 # Mc/sec: 12740.91 // Query: T249690_2 [L=3741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.79 # Mc/sec: 13547.30 // Query: T249690_3 [L=3740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.34s 00:00:01.92 Elapsed: 00:00:00.73 # Mc/sec: 14656.86 // Query: T272751_1 [L=609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 64 (0.00392494); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3416.17 // Query: T272751_2 [L=609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0048 16.4 0.1 0.0048 16.4 0.1 3.0 3 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.1 0.077 1.3e+03 11 21 .] 270 280 .. 269 280 .. 0.87 2 ! 16.4 0.1 3e-07 0.0048 4 20 .. 369 385 .. 369 386 .. 0.91 3 ? -3.7 0.4 0.91 1.5e+04 15 21 .] 565 571 .. 561 571 .. 0.81 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.077 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272751_2 270 WRGFVLTRSFR 280 9***9988886 PP == domain 2 score: 16.4 bits; conditional E-value: 3e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272751_2 369 VTVMQAHVRGWLERKRL 385 689************97 PP == domain 3 score: -3.7 bits; conditional E-value: 0.91 HHHHHHH CS IQ 15 laRkryk 21 + R++yk T272751_2 565 KMRQHYK 571 6899997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.74 # Mc/sec: 2354.39 // Query: T272751_3 [L=609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.71 # Mc/sec: 2453.87 // Query: T230005_1 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-47 160.1 5.5 2e-47 160.1 5.5 1.6 2 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.4 1.3 1 1.6e+04 64 79 .. 126 141 .. 115 143 .. 0.57 2 ! 160.1 5.5 1.2e-51 2e-47 16 121 .] 605 710 .. 603 710 .. 0.99 Alignments for each domain: == domain 1 score: -5.4 bits; conditional E-value: 1 TMEM191C 64 llllPlgflalpllyl 79 +ll Pl +l + ++ + T230005_1 126 FLLFPLRILLMYFILV 141 4566776665554444 PP == domain 2 score: 160.1 bits; conditional E-value: 1.2e-51 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelra 115 cd+qlr vq++++slmee+arad+e+rlfgg++a a+r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra T230005_1 605 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAIRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRA 704 59************************************************************************************************** PP TMEM191C 116 rGllPa 121 +GllP+ T230005_1 705 NGLLPT 710 *****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 6315.50 // Query: T230005_2 [L=1457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 7064.80 // Query: T230005_3 [L=1456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.7 15.3 4 7.4 1.7 2.1 2 ATG16 Autophagy protein 16 (ATG16) Domain annotation for each model (and alignments): >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 1.7 0.00024 4 126 178 .. 332 384 .. 313 388 .. 0.57 2 ? 6.4 6.1 0.0005 8.1 64 130 .. 522 584 .. 511 592 .. 0.81 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00024 ATG16 126 erlaeleaeraaleeklkdreeelrekeklvqdlqDElqaLqlqlnqaEeklr 178 +++a+ ++ +l++ +d +++ +e+ekl+ l E ++L+ l+ + e+ r T230005_3 332 TAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERER 384 44445555555555555555555555555555555555555555555444444 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0005 ATG16 64 elasssqsnskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 130 +++ s + +++ ++l+++l+ el+ + ++la +l++l++el+ e+k +ee+l++ T230005_3 522 QEQHS----RQLQEQWEELSSQLFYYGGELQSQKSTEQQLAAQLVTLQNELELAETKCALQEEKLQQ 584 22333....336789999999999999999999999999**********999999999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 626 (0.0383908); expected 326.1 (0.02) Passed bias filter: 353 (0.0216485); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.75 # Mc/sec: 5553.82 // Query: T306731_1 [L=3361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.89 # Mc/sec: 10803.65 // Query: T306731_2 [L=3361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.31s 00:00:01.66 Elapsed: 00:00:00.78 # Mc/sec: 12327.24 // Query: T306731_3 [L=3360] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3360 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.77 # Mc/sec: 12483.62 // Query: T138402_1 [L=3373] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3373 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.88 # Mc/sec: 10965.43 // Query: T138402_2 [L=3372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.34s 00:00:01.74 Elapsed: 00:00:00.76 # Mc/sec: 12693.05 // Query: T138402_3 [L=3372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.75 # Mc/sec: 12862.29 // Query: T000139_1 [L=2320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 8733.06 // Query: T000139_2 [L=2319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.74 # Mc/sec: 8965.22 // Query: T000139_3 [L=2319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 9901.89 // Query: T184430_1 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 4431.86 // Query: T184430_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.67 # Mc/sec: 3902.68 // Query: T184430_3 [L=913] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.54 9.9 2.5 0.96 9.1 2.5 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 2.5 5.9e-05 0.96 7 17 .. 784 794 .. 784 796 .. 0.92 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 5.9e-05 DUF1725 7 MELEnIILSEi 17 M LE+I+LSEi T184430_3 784 MNLEDIMLSEI 794 88********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (913 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 794 (0.0486937); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 3898.41 // Query: T078928_1 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-40 139.5 14.0 2e-40 139.2 14.0 1.1 1 Filament Intermediate filament protein ------ inclusion threshold ------ 0.46 10.4 10.1 0.72 9.8 2.9 2.2 2 BRE1 BRE1 E3 ubiquitin ligase 0.52 8.7 11.7 0.7 8.3 11.7 1.0 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOC 0.62 9.4 10.2 0.88 8.9 10.2 1.1 1 MscS_porin Mechanosensitive ion channel porin domain 1.3 7.7 11.4 2.4 6.8 11.2 1.4 1 Spc7 Spc7 kinetochore protein 3.8 7.5 12.9 5.8 6.9 12.9 1.1 1 Tropomyosin_1 Tropomyosin like 6.1 7.0 10.5 9.1 6.4 10.5 1.2 1 Muted Organelle biogenesis, Muted-like protein Domain annotation for each model (and alignments): >> Filament Intermediate filament protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 139.2 14.0 8.6e-44 2e-40 126 312 .] 359 546 .. 356 546 .. 0.96 Alignments for each domain: == domain 1 score: 139.2 bits; conditional E-value: 8.6e-44 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS Filament 126 vesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilke.iraqyeelaeknreeaeew.ykskleelqeaaeknsealrsakeeitelr 222 e Lkee fl++++ eE+ lq+q+s ++++v +d++ +l+++ + i+aqy+++a+ +r eae + y++k+ee++ ++++++e+lr++k e++el+ T078928_1 359 REPLKEESVFLQSLYGEEICLLQSQISdTSMVVKMDNSWELNMDLV-VA*IKAQYDDIASCSRVEAE-T*YQTKCEEVKATVTQQGENLRRTKDELNELN 456 588************************99*******9999998755.4788*************997.9******************************* PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-XXXX CS Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIatYRkLLEGeeer 312 +iq+l++e+e+ k+q+ +lea++a e++ ea+l++++ kl+ele++l++++++ma++l+ Yqe ++ Kl Ld+EIatYRkLLEGee r T078928_1 457 CMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLEGEEIR 546 ***************************************************************************************975 PP >> BRE1 BRE1 E3 ubiquitin ligase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 2.3 0.024 56 7 52 .. 433 478 .. 428 489 .. 0.81 2 ? 9.8 2.9 0.00031 0.72 14 69 .. 486 541 .. 475 544 .. 0.87 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.024 BRE1 7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamr 52 ++++ ++ e+l+ + el l ++rl+ae + +q+ ++ T078928_1 433 EVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEA 478 5677778899999999999999999999999999999998777665 PP == domain 2 score: 9.8 bits; conditional E-value: 0.00031 BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 + +++ls+ + +l+ le+ ++++++++a ++y ++m+sk l+ e+ + +kll+ T078928_1 486 QGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNSKLGLDVEIATYRKLLE 541 445667788889**************************************999986 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 11.7 0.0003 0.7 412 502 .. 439 525 .. 428 538 .. 0.86 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0003 CALCOCO1 412 aqeretlqqsaeadkerieklsaelqkleealqeermereklevelarekDcnrvqlsesrrelqElkaslrvaqkEkEqlqaekqElley 502 +q+ e+l+ k+ +++l+ +q+l + + +++ +r kle+ +a+ ls+++ l El +l+ a+++ ++++ qE+++ T078928_1 439 TQQGENLR----RTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLKQYQEVMNS 525 44444444....46999*******************************9999999**********************************85 PP >> MscS_porin Mechanosensitive ion channel porin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 10.2 0.00038 0.88 85 167 .. 429 512 .. 428 530 .. 0.93 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00038 MscS_porin 85 qrllqtssqlqelqeqlaqlnsqlrelqtrperaqqqltearqrlqeirnrLnssaasgt.plsqaqrtalqaelaalkaqiee 167 ++ +++++ + ++ e+l +++l+el+ ++r+ ++ + +q+ ++++ ++s+++g+ +ls+a + + e a+ ka+ ++ T078928_1 429 TKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEaALSNAHCKLAELEDALQKAKQDM 512 567899999*******************************************999999999********************998 PP >> Spc7 Spc7 kinetochore protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 11.2 0.001 2.4 198 287 .. 428 517 .. 419 537 .. 0.83 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.001 Spc7 198 keeLeelreelaelkeeieekkkelaelqeeleeleekieelkekkseleeeiaeaervleecrgwsesevsrlkeevkalekltgwkiv 287 +++ ee++ +++++ e++++ k+el+el+ +++l++++e+ k+++ +le+++a++e++ e+ + + + +l++ +++ ++ +++ T078928_1 428 QTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMACMLK 517 567789999999999999999999999999999999999999999999999999999999988888888888888888887777666654 PP >> Tropomyosin_1 Tropomyosin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 12.9 0.0025 5.8 8 102 .. 422 518 .. 419 525 .. 0.86 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0025 Tropomyosin_1 8 eaee.aleraeeleekvkeleqenlekeqeiksLqkknqqleeevekleeklkeakekaeesekkktnne.alnrkiqlLEeeleeadkkLkette 101 eae+ +++ ee+++ v ++ ++ + +e+++L+ +q l +eve+ +++ + ++++ +se++ + + + k+ LE+ l +a ++++ ++ T078928_1 422 EAET*YQTKCEEVKATVTQQGENLRRTKDELNELNCMIQRLTAEVENDKQQRCKLEAAVAQSEQQGEAALsNAHCKLAELEDALQKAKQDMACMLK 517 56666789***************************************9999888888888888877666549999************999876665 PP Tropomyosin_1 102 k 102 + T078928_1 518 Q 518 5 PP >> Muted Organelle biogenesis, Muted-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 10.5 0.0039 9.1 56 141 .. 434 521 .. 427 526 .. 0.82 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0039 Muted 56 lpkcleslkenLsevnkkleaalekverllqkeleeeqekserlqekeekrkkeweeFlkelqkkkeevDeefeekveelk...ekYse 141 + ++++ enL ++++l++++ +++rl + e+++++ +l+++ +++++ e l++ + k +e+++ +++ +++ ++Y+e T078928_1 434 VKATVTQQGENLRRTKDELNELNCMIQRLTAE-VENDKQQRCKLEAAVAQSEQQGEAALSNAHCKLAELEDALQKAKQDMAcmlKQYQE 521 4444555689********************99.77777799******************************999987765422256665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 732 (0.0448915); expected 326.1 (0.02) Passed bias filter: 378 (0.0231817); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.68 # Mc/sec: 4905.48 // Query: T078928_2 [L=1166] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1166 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 5559.55 // Query: T078928_3 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 5648.93 // Query: T232178_1 [L=1461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 6238.32 // Query: T232178_2 [L=1461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.63 # Mc/sec: 6634.40 // Query: T232178_3 [L=1460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 6328.50 // Query: T001269_1 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 4460.56 // Query: T001269_2 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 4047.54 // Query: T001269_3 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 3520.67 // Query: T215536_1 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 2823.92 // Query: T215536_2 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.62 # Mc/sec: 2819.30 // Query: T215536_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 2689.18 // Query: T222044_1 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 2971.57 // Query: T222044_2 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 3176.51 // Query: T222044_3 [L=643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3754.11 // Query: T090280_1 [L=4918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.26s 00:00:01.50 Elapsed: 00:00:00.57 # Mc/sec: 24257.87 // Query: T090280_2 [L=4918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.28s 00:00:01.52 Elapsed: 00:00:00.59 # Mc/sec: 23846.72 // Query: T090280_3 [L=4917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.26s 00:00:01.50 Elapsed: 00:00:00.56 # Mc/sec: 24678.42 // Query: T183053_1 [L=2010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 10455.03 // Query: T183053_2 [L=2010] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2010 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10849.56 // Query: T183053_3 [L=2009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 10844.17 // Query: T147576_1 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2734.95 // Query: T147576_2 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2681.33 // Query: T147576_3 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2681.33 // Query: T138464_1 [L=2120] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2120 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.24s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11231.41 // Query: T138464_2 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.15 11.5 0.0 0.25 10.8 0.0 1.2 1 Plant_tran Plant transposon protein Domain annotation for each model (and alignments): >> Plant_tran Plant transposon protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 1.5e-05 0.25 79 149 .. 565 638 .. 510 647 .. 0.76 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 1.5e-05 Plant_tran 79 pgsnndinvldrsplfadilkGeaprv...kyvvnekqynlayyladGiypkwatlvksirlpqlekkklfaqk 149 i l rs++ +++l G+ p+ +v+ + y+ i+p+ t v+++ +p+++ ++l +++ T138464_2 565 QCMHTHIYTLTRSHVHTHVLIGTHPHTftdVLTVYTLTRMHTMYVHTHIHPHTVTHVHTLTHPRTRMHQLSSHH 638 356678999**************998622235677777788899************************997765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11022.00 // Query: T138464_3 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 11437.92 // Query: T274840_1 [L=4446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-26 94.0 0.0 1.5e-26 93.4 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid prote 2.4e-18 65.9 0.0 3.8e-18 65.3 0.0 1.2 1 dUTPase dUTPase 3e-06 26.2 3.8 4.3e-06 25.7 3.8 1.1 1 Transposase_22 L1 transposable element 8.8e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly ------ inclusion threshold ------ 0.048 13.7 0.0 0.076 13.1 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.4 0.0 4.6e-30 1.5e-26 112 199 .. 1174 1261 .. 1164 1262 .. 0.94 Alignments for each domain: == domain 1 score: 93.4 bits; conditional E-value: 4.6e-30 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraCqgvggav 199 +ki + g++ +s + ++QGpkEpy df+a l+++l+k++ad +a++++++ La++NANpeCq+ l+p+ +++ l d+++aC+g gg T274840_1 1174 KKITSGGEQYPSSSAVKQGPKEPYADFIAQLQESLKKVIADSAAQHIVLRLLAFDNANPECQATLRPITAKAHLVDYIKACDGFGGNL 1261 7999999*****************************************************************************9975 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.3 0.0 1.2e-21 3.8e-18 5 127 .. 1376 1490 .. 1372 1495 .. 0.87 Alignments for each domain: == domain 1 score: 65.3 bits; conditional E-value: 1.2e-21 BEBESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLif 101 + + + +sA Dl+ +k + + p + + vpt+++ +lp+g+ +l+l RS+l++kg+ v +gvidsdy+Ge+++v+ +t+ + k g+Ri qL++ T274840_1 1376 CLSPTTTGSAAVDLCCTKAVSLLPgEPPQKVPTGVCGPLPAGTVGLLLSRSSLNLKGVQVQTGVIDSDYNGEIQIVI--STSVPWKAGPGERISQLLI 1471 6788999*****************7789*******************************************888887..68899************** PP EEBECGEEEEESSTTTESSBTTXTTT CS dUTPase 102 ariltaeleevetlkatergeggfgs 127 +++++ + k++ +++ggfgs T274840_1 1472 VPYVE--M-----GKSETKQTGGFGS 1490 *9998..1.....1334445555555 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 3.8 1.3e-09 4.3e-06 164 250 .. 595 680 .. 594 683 .. 0.88 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 1.3e-09 HHHHHHHHHHHHHHHHH.HHHHHHHTTTEEEEES----TT--HHHHHHHH.HHHHHH.H-HHHHHHT---EEEEEEESSSS-TSSSS--E CS Transposase_22 164 revkerekrkkileqsl.qviqdtvkrPnlrliGvdesedeqlkklenil.nkiiee.nfPnlkkeanviiqeiyrtPnrqdskrassrh 250 ++ k++ekr+k++eq+l v ++vkr n ++ G++ ++e+ ++le+i+ + i nfP l+++ n +iqei+ tP + s r+s+r T274840_1 595 KTDKNKEKRMKRNEQNL*EV-CNYVKRSNQQVTGIPARDKEKVNNLEDIF*D--IIH*NFPSLARDGNNQIQEIQTTPTTFYS-RSSPRQ 680 6789************9997.58****************9999888888777..45999*******************99876.566765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 4.1e-08 0.00013 2 84 .. 1721 1775 .. 1719 1778 .. 0.92 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 4.1e-08 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvp 84 +Kk+ g++R++ +d++a+n++i++ + qpg++++ + +k++ l+ +Dlk++F+++p T274840_1 1721 KKKS-GKWRML----TDLRAINSVIQS---------MGALQPGLPSPAMI--------------PKNWPLIVMDLKDCFFTIP 1775 5666.*****7....7***********.........***********777..............9****************96 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 2.3e-05 0.076 8 87 .. 3562 3643 .. 3561 3666 .. 0.78 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 2.3e-05 EEEEE.ECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT...SCSEEEEEES-HHHHHHHHCCCHHHHHT CS RNase_H 8 tDGsc.lgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkal..ksdekvniytDSkYvvkgitqwvhrwkkn 87 tDGs+ + ++++ a++ + +r+ ++ +e + + +EL+A++ +++++ +++++v++yt S+ v +g+ w +w+k+ T274840_1 3562 TDGSS*Y-AGITRKWTALALQTLSRTSLKHRPEGKYSQCTELQAMHLVVQSA*kEEWPDVQLYTNSRAVANGLAGWSGTWEKH 3643 6666332.244567777554444677777777899***************8776999***********************653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.17u 0.30s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 21558.05 // Query: T274840_2 [L=4446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-12 46.7 0.5 5.3e-12 45.9 0.5 1.3 1 GP41 Retroviral envelope protein 4.8e-09 35.9 0.0 6.9e-09 35.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 2.3e-06 27.1 19.1 5.2e-06 25.9 8.7 3.1 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00086 19.1 6.2 0.0046 16.9 6.2 2.4 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.099 12.2 2.5 0.22 11.1 2.5 1.6 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 0.5 1.6e-15 5.3e-12 27 168 .. 2842 2979 .. 2835 2981 .. 0.87 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 1.6e-15 HHHHHHHHHHHHHHHHSSC.HH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHH CS GP41 27 letQeeidkklearvnale.evvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqek 122 + Q +id kl +++n l v+ lG+ v sl+ +++l+C n C+T+ yn++e +We +k hl+g ++sld++kl++++ ++++++ T274840_2 2842 WNSQTNIDLKLANQINDLR*I-VMWLGDRVSSLEYRIQLQCDWNTSDFCITPHLYNETEhEWEIIKRHLKGH--TGNLSLDIAKLKEQVFQASQAHLT 2936 57899999***9999998555.59**********************************************94..4589******************** PP HHHHHTCHHHHH.HHHHHGCHHHHHHHHH.HHHHHHHHHCHHHHHHH CS GP41 123 tlqeldkldklaqslannfkslnWvsyik.ltvliiavgvalrvvli 168 ++ + ++ a +++ ++nW++ k l+ +i ++++l++ ++ T274840_2 2937 LMPGTEVFEGAA----DGLAAINWLKRTKtLGGSVISMMIVLLIGVV 2979 ***877777777....8999999998765377889999999988654 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.4 0.0 2.1e-12 6.9e-09 107 221 .. 3198 3304 .. 3185 3304 .. 0.87 Alignments for each domain: == domain 1 score: 35.4 bits; conditional E-value: 2.1e-12 .................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS RVT_1 107 sflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204 s+ + ++ + ++++ + +y+ + lp G v+S +l+ ++++ l +++ +++tl++ + Di+++ s++e+ + l+ ++++l g +in +K++ T274840_2 3198 SCPKPHQKKFAFSWQ--GSQYTFTILPKGYVNSTALCHNLIQRYLDHFSL-PQDITLVHHIGDIMLIGASEQEVANTLDLLVRYLHARGWEINLTKIQ 3292 333334456667776..899****************************98.69********************************************* PP EE.....ESSEEETTEE CS RVT_1 205 lvlfsgkseevkyLGvt 221 s++vk+LGv+ T274840_2 3293 EP-----STSVKFLGVQ 3304 **.....9*******95 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.3 2.7 0.0044 14 2 19 .. 1284 1301 .. 1283 1306 .. 0.93 2 ! 25.9 8.7 1.6e-09 5.2e-06 3 35 .. 1320 1352 .. 1318 1353 .. 0.90 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0044 --B-TTT-SSBS-TTT-- CS zf-CCHC_5 2 pglCpRCkkgkHwardCh 19 pg C C+k H +++C+ T274840_2 1284 PGACFNCGKHGHTKKECR 1301 899**************8 PP == domain 2 score: 25.9 bits; conditional E-value: 1.6e-09 -B-TTT-SSBS.-TTT---SEEGGGEE---XXXX CS zf-CCHC_5 3 glCpRCkkgkH.wardChskfdknGnpLsanegr 35 + Cp+C kgkH ++Ch kfdk+Gnp s+n r T274840_2 1320 EICPKCRKGKH*A-NQCHCKFDKDGNPISGNAMR 1352 68********998.8***************9866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 6.2 1.4e-06 0.0046 2 18 .] 1286 1302 .. 1285 1302 .. 0.93 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 1.4e-06 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +C+nCG+ GH +++C k T274840_2 1286 ACFNCGKHGHTKKECRK 1302 7**************86 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 2.5 6.9e-05 0.22 31 48 .. 1284 1301 .. 1283 1302 .. 0.91 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 6.9e-05 zf-CCHC_4 31 prfCfiCgllGHsdkeCp 48 p Cf+Cg GH++keC T274840_2 1284 PGACFNCGKHGHTKKECR 1301 678**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.16u 0.25s 00:00:01.41 Elapsed: 00:00:00.55 # Mc/sec: 23125.91 // Query: T274840_3 [L=4446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-24 85.1 0.6 4.2e-24 83.9 0.6 1.7 1 RVT_thumb Reverse transcriptase thumb domain 2e-20 72.8 0.0 4.6e-20 71.7 0.0 1.5 1 RVP Retroviral aspartyl protease 2.2e-18 66.5 0.0 4.2e-18 65.5 0.0 1.5 1 rve Integrase core domain 5e-14 51.8 0.2 1.1e-13 50.6 0.2 1.6 1 Gag_p10 Retroviral GAG p10 protein 2e-13 50.2 0.1 3.5e-13 49.5 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 2.7e-12 46.9 0.2 4.9e-12 46.0 0.2 1.3 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein 5.2e-11 42.8 0.1 8.6e-11 42.1 0.1 1.3 1 RNase_H RNase H 1.2e-08 34.6 2.2 2.2e-08 33.8 2.2 1.4 1 G-patch G-patch domain 0.00072 19.3 1.5 0.0029 17.4 1.5 2.1 1 Integrase_Zn Integrase Zinc binding domain 0.00086 18.4 5.6 0.0063 15.7 3.1 2.4 2 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.9 0.6 2.6e-27 4.2e-24 1 66 [] 1895 1959 .. 1895 1959 .. 0.96 Alignments for each domain: == domain 1 score: 83.9 bits; conditional E-value: 2.6e-27 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 pqk++++rd+lktLNDfQkLlgdINWi+ lgi+t+ +++LF+iL Gd++ltsp qL +eA+++L+ T274840_3 1895 PQKVTIHRDQLKTLNDFQKLLGDINWIQSALGIPTYAISNLFSILIGDPSLTSPQQL-KEAQAELQ 1959 6********************************************************.67888886 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.0 2.8e-23 4.6e-20 12 99 .. 1515 1601 .. 1513 1602 .. 0.97 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 2.8e-23 TTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 12 ggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +gk+i+al+DtGAd+++is +++P wp+ + ++ G+g+a e++qs++i+++ + + + g+++p+i++ +p+nl+GrdlLq++g++ T274840_3 1515 SGKKIKALVDTGADISIISLQHWPSMWPIPPVRFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITS-VPINLWGRDLLQQWGAQ 1601 6899******************************************************************.**************986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.5 0.0 2.6e-21 4.2e-18 5 117 .. 2289 2395 .. 2286 2395 .. 0.90 Alignments for each domain: == domain 1 score: 65.5 bits; conditional E-value: 2.6e-21 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 ++lwq+D+t+++++++ ay+++ id+fs +++a a ++ +a + +ll+ + g p+ v +Dn+s yts+a+++f + +i++ + p+++ T274840_3 2289 NSLWQMDITYVPSFGKL--AYVHICIDTFSQFVWAPAKWES-SAYVKWHLLK-CFTVMGI--PDSVKTDNASGYTSQALATFFSVRNIKHITGIPYNS 2380 89**********66555..****************999999.6666666666.7888888..************************************ PP rve 103 qdnGkvErfnrtlkd 117 q +++vEr+n lk+ T274840_3 2381 QGQAIVERMNLSLKQ 2395 **********99986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.6 0.2 6.9e-17 1.1e-13 2 84 .] 850 932 .. 849 932 .. 0.90 Alignments for each domain: == domain 1 score: 50.6 bits; conditional E-value: 6.9e-17 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee.GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevLd 84 ++ +l++l +Ll++ G+kv + + l+++++ ve++cPWF + Gt+++e+W+ vg+ lk +a + g e ip++v+s+w+lir++L+ T274840_3 850 HKAYLSLLWKLLRKGGVKVIT-S*LTQLFSAVEKYCPWF-LD*GTMNVEVWENVGSTLK-KAYKDGaEDIPITVWSVWALIRSALE 932 678****************75.78899************.6999***************.5555666***************9985 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.5 0.1 2.1e-16 3.5e-13 84 219 .. 1774 1885 .. 1762 1888 .. 0.88 Alignments for each domain: == domain 1 score: 49.5 bits; conditional E-value: 2.1e-16 BB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH.. CS RVT_1 84 pleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee.. 179 pl+e++++ +af++p vn+ +s +++ +k lpqG+ +SP++++ ++ +++++ +k++++++++rY+D il+++ ++e T274840_3 1774 PLAEQDYERFAFTIP------------------AVNNLQSDKHFHWKMLPQGMLNSPTICQTYVGQAIEPTHKKFSNCYIIRYIDNILCAAPTREIll 1853 677888888888888..................4566699****************************************************988755 PP .HHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS RVT_1 180 .lqelleaveewlkesglkinpeKtklvlfsgkseevkyLG 219 + ++++++ ++ ++l i+ +K++ + +++ yLG T274840_3 1854 *C---YDHLQNSISHANLIIALDKIQTT------TPYSYLG 1885 54...5677899999*************......8999999 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.0 0.2 3e-15 4.9e-12 8 113 .. 1065 1174 .. 1064 1181 .. 0.87 Alignments for each domain: == domain 1 score: 46.0 bits; conditional E-value: 3e-15 Gag_p24 8 kkaveqygpsspeviqlidala..eqalpkdlekll.ar.vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevl 100 k+a++qygp+sp+v+ l++++a +q++p d+ l+ a+ + ++l+ +++w ee + ++v+ a+++i+i++d+llg + q+ ++ +++ T274840_3 1065 KQAINQYGPGSPFVMRLLKNVAvfSQMTPTDWGALT*AClTPAQFLQfKTWWAEEGSTQAAHNVQ-AQPQINITADQLLGVSGWAGLDAQVVMQDDAI 1161 899****************98855799********99885889999999******9999555554.446************99888777777777*** PP Gag_p24 101 eqvrrlillalek 113 eq+r+++++a+ek T274840_3 1162 EQLRAVCIRAWEK 1174 ***********98 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.1 0.1 5.3e-14 8.6e-11 4 141 .. 2106 2230 .. 2103 2232 .. 0.73 Alignments for each domain: == domain 1 score: 42.1 bits; conditional E-value: 5.3e-14 EEEEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT. CS RNase_H 4 vvvYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn. 100 +v+tD s++ g+a + +k + +++++ +++++aEL Avie+L a + +v +++DS+Yvv+ tq v++++ + + t+eq ++ T274840_3 2106 ENVFTDESSN-----GKASYSGSKS--KVFQTSY---TSAQKAELVAVIEVLTA--FEMSVDVISDSSYVVH-STQLVENAQLRFY--TDEQ--LMTl 2186 5678888866.....7777744433..4555555...6****************..999*************.8999999866555..5555..4441 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++l+ +++++ ++++h+++H + + +maD l+ a T274840_3 2187 lTQLQTAVRST--MYPIYITHIRAHISLpgplTAATQMADCLVATA 2230 23555555333..458*********988676755788999887765 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 2.2 1.3e-11 2.2e-08 7 44 .. 1615 1652 .. 1610 1653 .. 0.95 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 1.3e-11 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+GLGk+ qG + P++a+ + G+G+ T274840_3 1615 HMMHEMGYVPGMGLGKNLQGLKKPLQAEGQNPHQGVGY 1652 6***********************************98 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 1.5 1.8e-06 0.0029 1 24 [. 2234 2257 .. 2234 2270 .. 0.92 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 1.8e-06 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitre 24 Ak +H+l+H+N+ +L+++++it + T274840_3 2234 AKHFHNLTHVNTSGLKHRYSITQK 2257 89*******************964 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 3.1 3.8e-06 0.0063 5 49 .. 2452 2494 .. 2449 2495 .. 0.87 2 ? 2.6 0.0 0.045 74 16 28 .. 4085 4097 .. 4082 4099 .. 0.89 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 3.8e-06 EEE-SSTTS--EEEEEEEEEETTEEEE..E-SS.-EEEEEGGGEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikgrGavcvFPqdas.dikwvPeRlvrk 49 v w+d +++W +i+grG++cv + +++ +++w+P R +++ T274840_3 2452 VWWRDPITKSWE--IGKIIWGRGYACV-SPGQN*QPIWIPSRHLKP 2494 779999999998..5579*********.8888899*******9996 PP == domain 2 score: 2.6 bits; conditional E-value: 0.045 EEEEEEEEEETTE CS IN_DBD_C 16 kGPdpvLikgrGa 28 kGP++vL kg+G T274840_3 4085 KGPAEVLAKGKGN 4097 9**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.59 # Mc/sec: 21558.05 // Query: T041442_1 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 35 (0.00214645); expected 326.1 (0.02) Passed bias filter: 15 (0.000919907); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1491.28 // Query: T041442_2 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 1368.71 // Query: T041442_3 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 1368.71 // Query: T361166_1 [L=622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3558.87 // Query: T361166_2 [L=621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3483.48 // Query: T361166_3 [L=621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-27 92.9 0.2 1.7e-26 91.7 0.2 1.6 1 Transposase_1 Transposase (partial DDE domain) 0.00045 20.6 0.0 0.00084 19.8 0.0 1.5 1 HTH_32 Homeodomain-like domain 0.0035 17.4 0.0 0.0058 16.7 0.0 1.3 1 HTH_Tnp_Tc3_2 Transposase 0.0062 15.9 0.0 0.011 15.1 0.0 1.4 1 HTH_24 Winged helix-turn-helix DNA-binding 0.0087 15.7 0.1 0.42 10.4 0.0 2.4 2 HTH_23 Homeodomain-like domain ------ inclusion threshold ------ 0.019 14.7 0.1 0.043 13.6 0.1 1.5 1 HTH_11 HTH domain 0.021 14.8 0.0 2.5 8.1 0.0 2.4 2 HTH_28 Helix-turn-helix domain 0.026 14.3 0.0 0.051 13.3 0.0 1.4 1 MarR_2 MarR family 0.032 13.8 0.1 0.064 12.9 0.1 1.4 1 DDE_3 DDE superfamily endonuclease 0.09 12.8 0.0 0.17 12.0 0.0 1.5 1 HTH_17 Helix-turn-helix domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.7 0.2 1e-29 1.7e-26 7 80 .] 228 300 .. 228 300 .. 0.95 Alignments for each domain: == domain 1 score: 91.7 bits; conditional E-value: 1e-29 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqq.ldklrqklqekrpalvnr 80 + aqWld++ +pk++pkp+lhq+kvm+tVwWsa+gli+y+fl+pget+tse+Ya q +d+++qklq++ alvnr T361166_3 228 QPAQWLDQE-APKHFPKPNLHQNKVMVTVWWSAAGLIHYNFLNPGETLTSEKYA-Q*IDEMHQKLQHLPLALVNR 300 579**9986.68*****************************************8.999***************97 PP >> HTH_32 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 5.1e-07 0.00084 1 73 [] 106 168 .. 106 168 .. 0.84 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 5.1e-07 HTH_32 1 TvsrwlkRyneeGlegLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 Tv+ w k++ G e L+d++++g p+ ++ ++++a+++ +p ++ ++a++l + hstv r L T361166_3 106 TVQWWFKKFH-KGEESLEDEEHSGQPSEVD---SDQLRAIIEADPLITTPEVAEEL------NIDHSTVVRHL 168 99*******6.789************6555...555555564569***********......8******9976 PP >> HTH_Tnp_Tc3_2 Transposase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 3.5e-06 0.0058 2 65 .. 136 195 .. 135 199 .. 0.93 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 3.5e-06 HTH_Tnp_Tc3_2 2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLrkaglkkrkprkkp.lLskknrkaRLe 65 +++ ++++dP it e+a+el ++ ++T+ r L+++g k +++p +Ls+k++ +R+e T361166_3 136 DQLRAIIEADPLITTPEVAEEL-----NIDHSTVVRHLKQIGKVKKLGKWVPcELSEKQKNCRFE 195 578899****************.....9***********************967*********97 PP >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 6.9e-06 0.011 11 39 .. 141 169 .. 138 170 .. 0.91 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 6.9e-06 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p i+ e+Ae+l++ stv r+lk T361166_3 141 IIEADPLITTPEVAEELNIDHSTVVRHLK 169 6778**********************998 PP >> HTH_23 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.066 1.1e+02 31 49 .. 104 121 .. 103 122 .. 0.89 2 ! 10.4 0.0 0.00026 0.42 17 39 .. 147 169 .. 137 171 .. 0.82 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.066 HTH_23 31 rrTvyrwlkryreeGlegl 49 +rTv+ w k++ +G e+l T361166_3 104 ERTVQWWFKKF-HKGEESL 121 79*********.8999987 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00026 HTH_23 17 GlsvreIAreLgvsrrTvyrwlk 39 ++++e+A+eL++ ++Tv r lk T361166_3 147 LITTPEVAEELNIDHSTVVRHLK 169 689***************99776 PP >> HTH_11 HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 2.6e-05 0.043 7 39 .. 139 171 .. 135 177 .. 0.88 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.6e-05 HTH_11 7 elLleargpisgeeLAeeLnvSrrtvrrdIkaL 39 + ++ea++ i+ e AeeLn+ +tv+r++k++ T361166_3 139 RAIIEADPLITTPEVAEELNIDHSTVVRHLKQI 171 556699999**********************87 PP >> HTH_28 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.0 0.029 47 25 47 .. 103 124 .. 100 131 .. 0.81 2 ? 8.1 0.0 0.0016 2.5 15 35 .. 150 170 .. 138 173 .. 0.87 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.029 HTH_28 25 srrtvyrWikryeegGiagLvpr 47 ++rtv+ W k++ + G+++L++ T361166_3 103 NERTVQWWFKKFHK-GEESLEDE 124 89************.99***994 PP == domain 2 score: 8.1 bits; conditional E-value: 0.0016 HTH_28 15 vreaArelgisrrtvyrWikr 35 +e+A+el+i+++tv r +k+ T361166_3 150 TPEVAEELNIDHSTVVRHLKQ 170 579************999986 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 3.1e-05 0.051 11 43 .. 138 169 .. 134 171 .. 0.89 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 3.1e-05 HHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdl.tvselarrlglsksavsrilk 43 L a+ ++++ l t e+a++l++++s+v r lk T361166_3 138 LRAIIEADP--LiTTPEVAEELNIDHSTVVRHLK 169 788889998..77******************998 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 3.9e-05 0.064 78 143 .. 300 363 .. 285 365 .. 0.77 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3.9e-05 DDE_3 78 akkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivw.sklkrellkrrsfksld 143 k+ +l+ D a+ H ++ +++e + e+l PpySP+l p + ++l + l+ ++f++++ T361166_3 300 RKGPILLHDSAQPHIAQPALGKLNE--LGYEVLPHPPYSPDLSPTDYHFfKHLDNFLQG-KRFHNQQ 363 3478999999999999999999999..99***************997550556666666.6666654 PP >> HTH_17 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 0.0001 0.17 1 24 [. 147 170 .. 147 181 .. 0.78 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.0001 HTH_17 1 lltveEaAelLgvsrstvyrlirr 24 l t+ E+Ae L++ stv r +++ T361166_3 147 LITTPEVAEELNIDHSTVVRHLKQ 170 57****************998753 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 3416.49 // Query: T051565_1 [L=5851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0075 16.0 6.1 0.17 11.7 3.5 2.4 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 3.5 1e-05 0.17 3 39 .. 115 151 .. 110 152 .. 0.69 2 ! 7.1 0.3 0.00028 4.6 3 35 .. 145 177 .. 143 182 .. 0.76 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 tG++ +Gs+ tG++ +Gs+ tG +Gs+ tG + tG T051565_1 115 TGTVAMGSVATGSVATGSVATGTVATGSVATGTVATG 151 6677777777777777777777777777777777666 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00028 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGs 35 tG++ +Gs+ tG++ +Gs+ Gs Gs tGs T051565_1 145 TGTVATGSVATGTVATGSVARGSVARGSMATGS 177 677778888888888888888888888877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.62 # Mc/sec: 26997.93 // Query: T051565_2 [L=5851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 34 (0.00208512); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.34s 00:00:01.65 Elapsed: 00:00:00.61 # Mc/sec: 27440.52 // Query: T051565_3 [L=5850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.32s 00:00:01.66 Elapsed: 00:00:00.61 # Mc/sec: 27435.83 // Query: T210850_1 [L=2817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.25s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 14652.65 // Query: T210850_2 [L=2817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 14391.00 // Query: T210850_3 [L=2817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14391.00 // Query: T222192_1 [L=1906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 9566.21 // Query: T222192_2 [L=1906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.62 # Mc/sec: 8794.75 // Query: T222192_3 [L=1905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.71 # Mc/sec: 7675.89 // Query: T257479_1 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 3699.68 // Query: T257479_2 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3892.77 // Query: T257479_3 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 3824.48 // Query: T152036_1 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.59 # Mc/sec: 9014.04 // Query: T152036_2 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.62 # Mc/sec: 8577.88 // Query: T152036_3 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 8309.82 // Query: T063487_1 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 13375.73 // Query: T063487_2 [L=2478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 10580.80 // Query: T063487_3 [L=2477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 10420.99 // Query: T221997_1 [L=3019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.36s 00:00:01.48 Elapsed: 00:00:00.79 # Mc/sec: 10932.72 // Query: T221997_2 [L=3019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 12164.57 // Query: T221997_3 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.74 # Mc/sec: 11667.55 // Query: T125177_1 [L=723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3566.17 // Query: T125177_2 [L=723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 3447.30 // Query: T125177_3 [L=722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3561.24 // Query: T228595_1 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.095 12.5 5.9 0.34 10.8 5.9 2.0 1 AT_hook AT hook motif Domain annotation for each model (and alignments): >> AT_hook AT hook motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 5.9 2.1e-05 0.34 1 10 [. 69 78 .. 69 79 .. 0.95 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 2.1e-05 AT_hook 1 kRkRGRPrKa 10 kR+RGRPrKa T228595_1 69 KRPRGRPRKA 78 8********7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 1721.19 // Query: T228595_2 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.60 # Mc/sec: 1749.87 // Query: T228595_3 [L=366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.57 # Mc/sec: 1805.28 // Query: T051120_1 [L=3100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.65 # Mc/sec: 13643.96 // Query: T051120_2 [L=3100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-05 24.8 0.0 5 6.8 0.0 4.2 4 DUF3060 Protein of unknown function (DUF3060) ------ inclusion threshold ------ 0.19 12.2 6.6 8.6e+02 0.4 6.6 4.0 1 DUF296 Domain of unknown function (DUF296) Domain annotation for each model (and alignments): >> DUF3060 Protein of unknown function (DUF3060) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.8 0.0 0.005 41 8 56 .. 330 379 .. 328 381 .. 0.87 2 ! 3.6 0.0 0.0058 47 3 56 .. 388 442 .. 382 444 .. 0.78 3 ! 6.8 0.0 0.00062 5 7 56 .. 446 496 .. 440 498 .. 0.92 4 ! 5.2 0.0 0.0019 16 7 48 .. 509 551 .. 499 556 .. 0.64 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.005 DUF3060 8 vtltGeCeavtVsGssNtVtvd.svdkitvsGldNtVtyksGePkvsdtG 56 v+l G+ ++v+ G+ +V+++ ++ +++++G+ + V+ + + P vs +G T051120_2 330 VSLRGTFQHVSLRGTFPHVSLRgTFPHVSLRGTFQPVSLRGTFPHVSLRG 379 8999999************99724556************99999999888 PP == domain 2 score: 3.6 bits; conditional E-value: 0.0058 DUF3060 3 GssNtvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 G+ v+l G+ +v+ G+ V+++ + + ++++G+ + V+ + + P vs +G T051120_2 388 GTFQHVSLRGTFPHVSLRGTFQPVSLRGTFQpVSLRGTFQPVSLRGTFPHVSLRG 442 4555688888888888888888888888777788888888888888888888777 PP == domain 3 score: 6.8 bits; conditional E-value: 0.00062 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksGePkvsdtG 56 v+l G+ +v+ G+ +V+++ + + ++++G+ + V+ + + P vs +G T051120_2 446 HVSLRGTFPHVSLRGTFQHVSLRGTFQpVSLRGTFQHVSLRGTFPHVSLRG 496 6999******************999999************9999***9998 PP == domain 4 score: 5.2 bits; conditional E-value: 0.0019 DUF3060 7 tvtltGeCeavtVsGssNtVtvdsvdk.itvsGldNtVtyksG 48 v+l G+ ++v+ G+ +V+++ + + ++++G+ + V+ + + T051120_2 509 HVSLRGTFQHVSLRGTFQHVSLRGTFQhVSLRGTFQHVSLRGT 551 5667777777777777777776655555777777666666554 PP >> DUF296 Domain of unknown function (DUF296) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 6.6 0.11 8.6e+02 30 30 .. 491 491 .. 327 554 .. 0.66 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.11 E CS DUF296 30 c 30 + T051120_2 491 H 491 1 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.78 # Mc/sec: 11369.97 // Query: T051120_3 [L=3099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.77 # Mc/sec: 11513.91 // Query: T172331_1 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.70 # Mc/sec: 7004.95 // Query: T172331_2 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.60 # Mc/sec: 8172.44 // Query: T172331_3 [L=1714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-05 24.3 0.0 4.2e-05 23.6 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 2.6e-09 4.2e-05 5 56 .. 488 540 .. 485 563 .. 0.85 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 2.6e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + T172331_3 488 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASE 540 68*******99999******766766.557778999**************9965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.77 # Mc/sec: 6368.13 // Query: T068774_1 [L=2099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.054 13.5 3.7 0.12 12.3 3.7 1.6 1 Eapp_C E2F-associated phosphoprotein 0.067 12.8 15.5 0.11 12.2 15.5 1.3 1 Coilin_N Coilin N-terminus 0.2 11.3 15.3 0.31 10.7 15.3 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 0.28 11.1 2.0 0.45 10.5 2.0 1.2 1 DDHD DDHD domain 0.71 8.5 20.0 0.98 8.1 20.0 1.1 1 NARP1 NMDA receptor-regulated protein 1 1.7 6.8 9.8 2.6 6.2 9.8 1.1 1 Rrn6 RNA polymerase I-specific transcription-initia 2.7 7.3 16.5 4.4 6.6 16.5 1.2 1 DUF1510 Protein of unknown function (DUF1510) 3 6.9 12.6 4.6 6.3 12.6 1.1 1 CCDC71L Coiled-coil domain-containing protein 71L 5.1 6.3 8.8 8.4 5.6 8.8 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 5.2 6.0 10.0 7.7 5.5 10.0 1.1 1 FLO_LFY Floricaula / Leafy protein 5.2 5.6 14.1 7.5 5.1 14.1 1.1 1 Tim54 Inner membrane protein import complex subunit 5.2 6.6 10.7 7.9 6.0 10.7 1.1 1 AAA_11 AAA domain 6.4 6.1 17.8 11 5.3 17.8 1.3 1 Sec62 Translocation protein Sec62 Domain annotation for each model (and alignments): >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 3.7 9.4e-05 0.12 76 117 .. 334 390 .. 324 469 .. 0.45 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 9.4e-05 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeee...............e 117 ++++e+e++++kk+k+++k++++++++++++eeeeee+++e + T068774_1 334 KEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEkekgrrkkkkqlvrlR 390 333333332222222222222222222222222222222211223344444555550 PP >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 15.5 8.7e-05 0.11 82 138 .. 327 383 .. 284 385 .. 0.63 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 8.7e-05 Coilin_N 82 tkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 +k++++++e+e+++ + k+ + + +kk+kkr++ ++e++e+++++++k+k ++kkk T068774_1 327 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKK 383 344444444444444455555555555555555555555555555555555555554 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 15.3 0.00024 0.31 84 154 .. 321 385 .. 307 407 .. 0.52 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00024 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkke 154 p+lkkk +e +e +ke+eee++ e+ +k+++++++k++k+++ ++k+e+eeee++k+k+k +++kkk+ T068774_1 321 PDLKKKEKE---KEMKKEKEEEERRER-KKRKRRRKKKRKKRRR--RKKEEEEEEEKKKEKEKGRRKKKKQ 385 455666554...344444444444444.4444444444443333..2222333333333333333333333 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 2.0 0.00036 0.45 128 189 .. 325 383 .. 274 413 .. 0.49 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00036 DDHD 128 eeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 ++e++k+ +++k++e+ +e ++++k++++++++++++++++ee++e ++ke e+ ++++k T068774_1 325 KKEKEKEMKKEKEEEERRE----RKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKKK 383 2222222222222222111....1122222222222222222222222222222333222222 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 20.0 0.00078 0.98 386 449 .. 323 384 .. 301 393 .. 0.49 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00078 HHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......----- CS NARP1 386 ledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked 449 l+ k+k+ke +ke++++++ + ++rk+ rkk++k++++++kee+e+++k+kek+ + ++kk++ T068774_1 323 LKKKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKE--KGRRKKKK 384 333333333333333333444444444444555554445554444444433333..22222222 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 9.8 0.0021 2.6 745 790 .. 335 377 .. 319 427 .. 0.53 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0021 Rrn6 745 sleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsk 790 + e+ee+r+r++rk++++++rk++ r+r+++++++e++++++ k T068774_1 335 EKEEEERRERKKRKRRRKKKRKKR---RRRKKEEEEEEEKKKEKEK 377 111222222222222222222222...2222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 16.5 0.0035 4.4 54 113 .. 325 384 .. 315 402 .. 0.39 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0035 DUF1510 54 seeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevt 113 ++e++k+ kke++ee+ +e k+ + ++++ k+ ++++ee+eek+ke+++ ++++ T068774_1 325 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKK 384 222222223333333333333333333333333333333333333333333333333333 PP >> CCDC71L Coiled-coil domain-containing protein 71L # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 12.6 0.0037 4.6 291 349 .. 327 387 .. 287 415 .. 0.59 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0037 CCDC71L 291 akakkikakesvqarterkkqksssetvGqKrkr.aeeakelpakkkar.lvpqsekselg 349 k k++k+ + +++r erkk+k+++++ +Kr+r +e++e +kkk++ ++ +++k++l+ T068774_1 327 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRrKKEEEEEEEKKKEKeKGRRKKKKQLV 387 3455555555555555555555555555444433133333333333333033344444433 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 8.8 0.0067 8.4 19 74 .. 326 382 .. 301 393 .. 0.40 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0067 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee..kldk 74 e++++ ++ekee+e++e+++ ++ +++++ ++k+ee+e+ee +++e+e + +k T068774_1 326 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEE-KKKEKEkgRRKK 382 222222222222222222222222222222222222222222222.222222122222 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 10.0 0.0062 7.7 163 213 .. 332 382 .. 304 399 .. 0.50 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0062 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS FLO_LFY 163 GGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag 213 + ++ee +rk++k+rr+kk++++++ +++ee+eee ++++e+ + + T068774_1 332 MKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKK 382 333444444445555555544444444444444333333333333322222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 14.1 0.006 7.5 188 249 .. 318 382 .. 314 395 .. 0.38 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.006 Tim54 188 GPldapeepeeeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeekeeeeeeeekek.kkkv 249 G l +++e+e++ ++e+eeee++e++++++ ++++++++++k+ee+eeee+++ekek ++k+ T068774_1 318 GSLPDLKKKEKEKEMKKEKEEEERRERKKRKRrrKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKK 382 44444444444443333333333333333333112222222222222222222333333223333 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 10.7 0.0063 7.9 133 195 .. 326 388 .. 311 414 .. 0.64 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0063 AAA_11 133 eleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleeevld 195 ++++ + + +++eee +++k++k ++k+k+k++++r+k ++e +e +ke e+ +++ ++++++ T068774_1 326 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKKQLVR 388 222222222233333334566666666666666666666666666777777776666666654 PP >> Sec62 Translocation protein Sec62 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 17.8 0.0088 11 21 100 .. 325 401 .. 319 415 .. 0.40 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0088 Sec62 21 kkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYvW 100 kk+++k+ +k+ke++++++ +k +++ kk++++ r +k++e+e+++kk+ +k+k ++kkk +l ++ +f + e + W T068774_1 325 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKK-EKEKGRRKKKKQLVRLRDLTF--ALENWSW 401 2222222222222222333333333333333333444443333333332.333334444444444444444..4455555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1961 (0.120262); expected 326.1 (0.02) Passed bias filter: 898 (0.0550718); expected 326.1 (0.02) Passed Vit filter: 383 (0.0234883); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 3.01u 0.51s 00:00:03.51 Elapsed: 00:00:00.98 # Mc/sec: 6127.43 // Query: T068774_2 [L=2098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.67 # Mc/sec: 8958.24 // Query: T068774_3 [L=2098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 713 (0.0437262); expected 326.1 (0.02) Passed bias filter: 456 (0.0279652); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.68 # Mc/sec: 8826.50 // Query: T001523_1 [L=2965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 14376.88 // Query: T001523_2 [L=2964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.79 # Mc/sec: 10733.54 // Query: T001523_3 [L=2964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 12113.57 // Query: T227682_1 [L=1287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 5336.07 // Query: T227682_2 [L=1286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 5660.04 // Query: T227682_3 [L=1286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 7075.05 // Query: T196650_1 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.035 13.6 1.1 0.069 12.6 1.1 1.4 1 DUF4672 Domain of unknown function (DUF4672) Domain annotation for each model (and alignments): >> DUF4672 Domain of unknown function (DUF4672) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 1.1 4.2e-06 0.069 80 128 .. 706 753 .. 692 759 .. 0.88 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.2e-06 DUF4672 80 drlqskqdegacvmhqecqiqscelsvsqesgpssPavtslasPPlcfs 128 d + qd g cv+ cq+ c v + g+ssP s a PP fs T196650_1 706 DLAMTLQDAGLCVVGTRCQLPCCCRYVCPS-GSSSPHAPSHACPPGTFS 753 556689*****************9999998.**************9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.67 # Mc/sec: 4658.46 // Query: T196650_2 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.66 # Mc/sec: 4724.70 // Query: T196650_3 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 5376.39 // Query: T125967_1 [L=1145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 5746.76 // Query: T125967_2 [L=1144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.70 # Mc/sec: 4675.41 // Query: T125967_3 [L=1144] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1144 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.73 # Mc/sec: 4483.27 // Query: T122300_1 [L=755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-22 77.4 0.2 9.9e-22 76.5 0.2 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.5 0.2 6.1e-26 9.9e-22 15 74 .. 265 324 .. 265 324 .. 0.96 Alignments for each domain: == domain 1 score: 76.5 bits; conditional E-value: 6.1e-26 Transposase_1 15 getpkkvpkpelhqkk.vmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekr 74 +e+pk++pkp+l+ +k vml VwWsa+ li+y+fl+pg+titse+Yaqq+++++qklq+++ T122300_1 265 EEAPKHFPKPNLQ-EK*VMLPVWWSAACLIHYNFLNPGKTITSEKYAQQINEMHQKLQRLQ 324 699*******776.9*******************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.60 # Mc/sec: 3599.88 // Query: T122300_2 [L=755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3483.75 // Query: T122300_3 [L=755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.48 # Mc/sec: 4499.85 // Query: T111471_1 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 763 (0.0467926); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.38s 00:00:01.64 Elapsed: 00:00:00.71 # Mc/sec: 6318.00 // Query: T111471_2 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 781 (0.0478965); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 6140.99 // Query: T111471_3 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 792 (0.0485711); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.68 # Mc/sec: 6592.53 // Query: T052055_1 [L=695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (695 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1021 (0.062615); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 3488.20 // Query: T052055_2 [L=694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1149 (0.0704649); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 2919.73 // Query: T052055_3 [L=694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 3746.07 // Query: T326108_1 [L=711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.61 # Mc/sec: 3334.51 // Query: T326108_2 [L=710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3982.72 // Query: T326108_3 [L=710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3224.11 // Query: T051431_1 [L=1795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 7335.99 // Query: T051431_2 [L=1794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 7438.16 // Query: T051431_3 [L=1794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.78 # Mc/sec: 6579.91 // Query: T128223_1 [L=470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.56 # Mc/sec: 2401.05 // Query: T128223_2 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 2313.33 // Query: T128223_3 [L=469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-07 31.2 1.6 3.7e-07 30.0 1.6 1.6 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.0 1.6 2.3e-11 3.7e-07 3 63 .. 77 138 .. 75 148 .. 0.90 Alignments for each domain: == domain 1 score: 30.0 bits; conditional E-value: 2.3e-11 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylen.tkvtqtpesmllaal 63 ap h+m +m s eqm t++a p tw q+k l+ +a l k+ t + m++a l T128223_3 77 APPVHQMAQMNISVEQMETSKTRQATPLTWGQVKSLAHIAEENLRSlNKLLTTSNLMMVAQL 138 7999*************************************999863578888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 2580.25 // Query: T227649_1 [L=4265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1385 (0.0849381); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 92 (0.00564209); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.33s 00:00:02.09 Elapsed: 00:00:00.62 # Mc/sec: 19679.74 // Query: T227649_2 [L=4265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1149 (0.0704649); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.34s 00:00:01.78 Elapsed: 00:00:00.63 # Mc/sec: 19367.37 // Query: T227649_3 [L=4264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1242 (0.0761683); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.37s 00:00:02.04 Elapsed: 00:00:00.64 # Mc/sec: 19060.28 // Query: T295335_1 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 10495.01 // Query: T295335_2 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 10495.01 // Query: T295335_3 [L=1980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 10687.63 // Query: T064240_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4912.93 // Query: T064240_2 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5103.72 // Query: T064240_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4907.42 // Query: T339231_1 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.055 13.6 0.1 0.13 12.4 0.1 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.1 8.2e-06 0.13 11 39 .] 97 125 .. 95 125 .. 0.90 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 8.2e-06 zf-H2C2 11 ltallarkyhwlgiketvseVissCkaCq 39 l++ll ++++ ++++++++V++ C++C+ T339231_1 97 LEKLLGWYFYISHLSALAETVTQWCVTCR 125 67888889********************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 7017.13 // Query: T339231_2 [L=1299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 7011.73 // Query: T339231_3 [L=1299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1299 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 7286.70 // Query: T018871_1 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 6755.96 // Query: T018871_2 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 6755.96 // Query: T018871_3 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6755.96 // Query: T157213_1 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 13066.19 // Query: T157213_2 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 13060.99 // Query: T157213_3 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 12827.76 // Query: T381561_1 [L=4438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.25s 00:00:01.40 Elapsed: 00:00:00.56 # Mc/sec: 22274.32 // Query: T381561_2 [L=4437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.28s 00:00:01.39 Elapsed: 00:00:00.55 # Mc/sec: 23079.10 // Query: T381561_3 [L=4437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.28s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 21514.41 // Query: T210985_1 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.4 6.9 12.2 17 5.7 0.3 5.0 5 NADHdh_A3 NADH dehydrogenase 1 alpha subcomplex subunit 3 Domain annotation for each model (and alignments): >> NADHdh_A3 NADH dehydrogenase 1 alpha subcomplex subunit 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.1 0.097 1.6e+03 33 48 .. 407 422 .. 399 429 .. 0.81 2 ? 1.2 0.2 0.027 4.3e+02 28 47 .. 442 461 .. 424 471 .. 0.66 3 ? 1.4 0.3 0.024 3.9e+02 33 48 .. 467 482 .. 457 502 .. 0.55 4 ? 5.7 0.3 0.0011 17 26 48 .. 500 522 .. 489 525 .. 0.84 5 ? 2.2 0.1 0.013 2.1e+02 26 46 .. 550 570 .. 529 575 .. 0.68 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.097 NADHdh_A3 33 tkYsvminqatpynyp 48 ++Ys ++n +tpy+++ T210985_1 407 VHYSRVLNPSTPYSRA 422 4799999999999875 PP == domain 2 score: 1.2 bits; conditional E-value: 0.027 NADHdh_A3 28 llspytkYsvminqatpyny 47 +l p t+Ys ++n +t y++ T210985_1 442 VLNPSTHYSRVLNPSTHYSR 461 56666666666666666654 PP == domain 3 score: 1.4 bits; conditional E-value: 0.024 NADHdh_A3 33 tkYsvminqatpynyp 48 t+Ys ++n +t y+++ T210985_1 467 THYSRVLNPSTHYSRA 482 4444444444444433 PP == domain 4 score: 5.7 bits; conditional E-value: 0.0011 NADHdh_A3 26 lpllspytkYsvminqatpynyp 48 + +l p t+Ys ++n++tpy+++ T210985_1 500 SRVLNPSTHYSRVLNSSTPYSRA 522 56899***************976 PP == domain 5 score: 2.2 bits; conditional E-value: 0.013 NADHdh_A3 26 lpllspytkYsvminqatpyn 46 + +l p t+Ys ++n++t y+ T210985_1 550 SRALNPSTQYSRVLNSSTHYS 570 445667777777777777666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.21s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6419.70 // Query: T210985_2 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6293.83 // Query: T210985_3 [L=1121] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1121 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 125 (0.00766589); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 6167.29 // Query: T049774_1 [L=1019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1019 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5716.05 // Query: T049774_2 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 5494.95 // Query: T049774_3 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 5600.62 // Query: T383934_1 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 2832.78 // Query: T383934_2 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-06 27.7 3.0 3.7e-06 26.8 3.0 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 3.0 2.3e-10 3.7e-06 4 68 .. 230 294 .. 228 296 .. 0.84 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 2.3e-10 HERV-K_REC 4 plthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsm 68 p h+m +m s eqm t +a pptw ++k+l++ l t +++a+++++ + T383934_2 230 PPVHQMAQMNISVEQMETSKTYQATPPTWGRMKRLARTEEENLRSQHKLLTTSNLMVATMVVIPL 294 678**********************************9999998877777766666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 295 (0.0180915); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 2948.41 // Query: T383934_3 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 2889.44 // Query: T318094_1 [L=2333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.4 0.5 74 3.4 0.2 4.0 4 LisH LisH Domain annotation for each model (and alignments): >> LisH LisH # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.0049 79 5 18 .. 350 363 .. 350 364 .. 0.90 2 ? -1.1 0.0 0.12 1.9e+03 5 18 .. 607 620 .. 607 621 .. 0.90 3 ? -1.1 0.0 0.12 2e+03 6 21 .. 1469 1484 .. 1469 1485 .. 0.85 4 ? 3.4 0.2 0.0045 74 6 18 .. 2201 2213 .. 2201 2214 .. 0.86 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.0049 HHHHHHHHHCT-HH CS LisH 5 rLIydYLvkeGyke 18 +LI +Lvk+G+++ T318094_1 350 QLIFVFLVKMGFCH 363 68999*******98 PP == domain 2 score: -1.1 bits; conditional E-value: 0.12 HHHHHHHHHCT-HH CS LisH 5 rLIydYLvkeGyke 18 +LI +Lv+ G+++ T318094_1 607 QLIFVFLVETGFHH 620 68999*******98 PP == domain 3 score: -1.1 bits; conditional E-value: 0.12 HHHHHHHHCT-HHHHH CS LisH 6 LIydYLvkeGyketAe 21 LI+ ++v++G ++ A+ T318094_1 1469 LILKFFVEMGSCHVAQ 1484 8*********888776 PP == domain 4 score: 3.4 bits; conditional E-value: 0.0045 HHHHHHHHCT-HH CS LisH 6 LIydYLvkeGyke 18 LI YLv++G+++ T318094_1 2201 LIFLYLVEMGFHH 2213 6777*******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12135.12 // Query: T318094_2 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.092 12.6 12.9 0.73 9.7 1.3 3.1 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 4.4 0.00045 7.4 17 30 .. 1330 1343 .. 1328 1344 .. 0.96 2 ? 9.7 1.3 4.5e-05 0.73 17 30 .. 1738 1751 .. 1733 1752 .. 0.95 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00045 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T318094_2 1330 CSGAISAHCNLCLP 1343 *************9 PP == domain 2 score: 9.7 bits; conditional E-value: 4.5e-05 Toxin_18 17 CSGAcSaaFgyCLp 30 CSGA Sa ++CLp T318094_2 1738 CSGAISAHCNLCLP 1751 *************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 11913.31 // Query: T318094_3 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.25s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12354.55 // Query: T232763_1 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1833.27 // Query: T232763_2 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 1833.27 // Query: T232763_3 [L=314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 1833.27 // Query: T233832_1 [L=5165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1506 (0.0923586); expected 326.1 (0.02) Passed bias filter: 436 (0.0267386); expected 326.1 (0.02) Passed Vit filter: 255 (0.0156384); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.04u 0.47s 00:00:04.51 Elapsed: 00:00:00.86 # Mc/sec: 17181.61 // Query: T233832_2 [L=5165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1482 (0.0908868); expected 326.1 (0.02) Passed bias filter: 453 (0.0277812); expected 326.1 (0.02) Passed Vit filter: 244 (0.0149638); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.58u 0.48s 00:00:04.06 Elapsed: 00:00:00.87 # Mc/sec: 16984.12 // Query: T233832_3 [L=5164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1286 (0.0788667); expected 326.1 (0.02) Passed bias filter: 345 (0.0211579); expected 326.1 (0.02) Passed Vit filter: 176 (0.0107936); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.29u 0.44s 00:00:03.73 Elapsed: 00:00:00.98 # Mc/sec: 15074.82 // Query: T320413_1 [L=2132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 9241.35 // Query: T320413_2 [L=2132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 8839.55 // Query: T320413_3 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 9994.15 // Query: T169320_1 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.26s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 9852.89 // Query: T169320_2 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 10198.61 // Query: T169320_3 [L=2032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 8943.39 // Query: T381559_1 [L=4337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.40s 00:00:01.84 Elapsed: 00:00:00.73 # Mc/sec: 16996.47 // Query: T381559_2 [L=4336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.69 # Mc/sec: 17977.62 // Query: T381559_3 [L=4336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.76 # Mc/sec: 16321.79 // Query: T015096_1 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 4317.25 // Query: T015096_2 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 4518.30 // Query: T015096_3 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.70 # Mc/sec: 4066.47 // Query: T138139_1 [L=8384] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8384 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1208 (0.0740832); expected 326.1 (0.02) Passed bias filter: 280 (0.0171716); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.12u 0.51s 00:00:04.63 Elapsed: 00:00:01.04 # Mc/sec: 23062.69 // Query: T138139_2 [L=8383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1414 (0.0867165); expected 326.1 (0.02) Passed bias filter: 387 (0.0237336); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.97u 0.51s 00:00:05.48 Elapsed: 00:00:01.17 # Mc/sec: 20497.72 // Query: T138139_3 [L=8383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1325 (0.0812584); expected 326.1 (0.02) Passed bias filter: 394 (0.0241629); expected 326.1 (0.02) Passed Vit filter: 124 (0.00760456); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.85u 0.51s 00:00:05.36 Elapsed: 00:00:01.13 # Mc/sec: 21037.14 // Query: T361830_1 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.60 # Mc/sec: 16659.57 // Query: T361830_2 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.29s 00:00:01.70 Elapsed: 00:00:00.83 # Mc/sec: 12039.61 // Query: T361830_3 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.30s 00:00:01.53 Elapsed: 00:00:00.82 # Mc/sec: 12186.44 // Query: T111359_1 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 7603.02 // Query: T111359_2 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 6896.80 // Query: T111359_3 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.69 # Mc/sec: 6496.99 // Query: T194247_1 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:00.88 # Mc/sec: 15516.75 // Query: T194247_2 [L=4773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.41s 00:00:02.06 Elapsed: 00:00:00.79 # Mc/sec: 17284.48 // Query: T194247_3 [L=4772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:00.76 # Mc/sec: 17963.00 // Query: T033486_1 [L=2307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.75 # Mc/sec: 8799.91 // Query: T033486_2 [L=2307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 9295.68 // Query: T033486_3 [L=2307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.30s 00:00:01.38 Elapsed: 00:00:00.77 # Mc/sec: 8571.34 // Query: T169170_1 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.55 # Mc/sec: 1362.80 // Query: T169170_2 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 1208.93 // Query: T169170_3 [L=262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.69 # Mc/sec: 1086.29 // Query: T001156_1 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 6267.42 // Query: T001156_2 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 6080.33 // Query: T001156_3 [L=1423] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1423 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 6168.12 // Query: T156688_1 [L=904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 4040.92 // Query: T156688_2 [L=903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.74 # Mc/sec: 3490.99 // Query: T156688_3 [L=903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 4100.52 // Query: T220495_1 [L=569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.59 # Mc/sec: 2759.00 // Query: T220495_2 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.68 # Mc/sec: 2389.63 // Query: T220495_3 [L=568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 2801.64 // Query: T195972_1 [L=3613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.78 # Mc/sec: 13251.51 // Query: T195972_2 [L=3612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.41s 00:00:01.91 Elapsed: 00:00:00.87 # Mc/sec: 11877.38 // Query: T195972_3 [L=3612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.64 # Mc/sec: 16145.81 // Query: T033485_1 [L=2217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 9327.15 // Query: T033485_2 [L=2217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.71 # Mc/sec: 8933.04 // Query: T033485_3 [L=2217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2217 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.84 # Mc/sec: 7550.55 // Query: T052972_1 [L=6649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.34s 00:00:02.42 Elapsed: 00:00:00.92 # Mc/sec: 20675.72 // Query: T052972_2 [L=6648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.40s 00:00:02.44 Elapsed: 00:00:00.81 # Mc/sec: 23480.00 // Query: T052972_3 [L=6648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.32s 00:00:02.27 Elapsed: 00:00:00.84 # Mc/sec: 22641.43 // Query: T322057_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-29 99.4 249.5 2.2e-14 53.2 12.6 21.8 19 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.3 0.43 7.1e+03 7 16 .. 97 105 .. 87 122 .. 0.62 2 ? -1.3 0.2 0.14 2.3e+03 38 47 .. 871 880 .. 870 884 .. 0.76 3 ? 0.4 0.2 0.045 7.3e+02 7 34 .. 883 909 .. 877 911 .. 0.88 4 ! 31.0 5.1 1.2e-11 1.9e-07 3 49 .. 911 956 .. 909 957 .. 0.96 5 ! 7.0 3.1 0.00038 6.1 31 47 .. 959 975 .. 957 979 .. 0.90 6 ? 1.4 0.9 0.022 3.5e+02 34 49 .. 983 998 .. 981 999 .. 0.92 7 ? -13.6 23.0 1 1.6e+04 8 31 .. 1021 1081 .. 999 1102 .. 0.57 8 ? 1.6 7.2 0.018 3e+02 5 46 .. 1086 1119 .. 1083 1123 .. 0.54 9 ! 33.5 11.6 2e-12 3.3e-08 2 50 .] 1108 1156 .. 1107 1156 .. 0.89 10 ! 8.9 4.6 9.3e-05 1.5 29 50 .] 1156 1177 .. 1153 1177 .. 0.93 11 ! 18.2 2.4 1.2e-07 0.002 17 50 .] 1177 1210 .. 1177 1210 .. 0.95 12 ! 53.2 12.6 1.4e-18 2.2e-14 1 50 [] 1215 1262 .. 1215 1262 .. 0.99 13 ! 15.9 14.5 6.3e-07 0.01 2 44 .. 1293 1334 .. 1292 1346 .. 0.88 14 ? -1.6 0.1 0.18 3e+03 32 46 .. 1383 1401 .. 1372 1402 .. 0.80 15 ? 1.3 9.1 0.023 3.8e+02 2 27 .. 1457 1482 .. 1456 1508 .. 0.69 16 ! 6.1 18.0 0.00072 12 13 46 .. 1520 1567 .. 1483 1570 .. 0.67 17 ? -1.7 11.0 0.2 3.3e+03 9 27 .. 1573 1590 .. 1572 1623 .. 0.69 18 ? -1.8 2.1 0.21 3.5e+03 7 22 .. 1624 1638 .. 1622 1651 .. 0.59 19 ! 17.0 15.6 2.8e-07 0.0046 1 39 [. 1652 1734 .. 1652 1749 .. 0.96 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.43 DUF4705 7 srrpLqapas 16 ++r+L+ p T322057_1 97 GQRRLH-PEN 105 577777.554 PP == domain 2 score: -1.3 bits; conditional E-value: 0.14 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T322057_1 871 LPPGSLSRPR 880 5788888884 PP == domain 3 score: 0.4 bits; conditional E-value: 0.045 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsa 34 s rp q + ++ ++gl rp+ L++ sa T322057_1 883 SSRPPQ-TKLMTHNGLFRPIPYLTAVSA 909 678889.9************99999877 PP == domain 4 score: 31.0 bits; conditional E-value: 1.2e-11 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s Gp+l+++ rPssC T322057_1 911 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSLGPELSQVDVTRPSSC 956 689*******.************************************ PP == domain 5 score: 7.0 bits; conditional E-value: 0.00038 DUF4705 31 vAsaGpklppagLsrPs 47 +As+Gp lpp+gL rP+ T322057_1 959 AASPGPALPPGGLCRPR 975 8***************6 PP == domain 6 score: 1.4 bits; conditional E-value: 0.022 DUF4705 34 aGpklppagLsrPssC 49 +G+ lpp++L rP+s+ T322057_1 983 QGQLLPPGALCRPKSS 998 7999*********997 PP == domain 7 score: -13.6 bits; conditional E-value: 1 DUF4705 8 rrpLqa.....................................paslqasglsrpsaqLpv 31 +pLqa + ++++l+rps++L++ T322057_1 1021 SQPLQAqlllppsasfgpaqlmplgglprprf*llaasagldkARPPASRSLHRPSLCLTA 1081 5777766666666666653333333333333333333222222111134555555555555 PP == domain 8 score: 1.6 bits; conditional E-value: 0.018 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrP 46 Pas r L a+ q+s +L +AsaGp + L+rP T322057_1 1086 PASSR-LTAASPVQSS-------CLSAASAGPAPACQCLFRP 1119 55555.5555555555.......5555555555544445554 PP == domain 9 score: 33.5 bits; conditional E-value: 2e-12 DUF4705 2 gpAPasrrpLqapasl.qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 gpAPa++ + p l +++glsrp++ Lp+As+Gp++p++gLsrP++ L T322057_1 1108 GPAPACQCLFR-PMGLiPHNGLSRPRFSLPAASPGPEPPQVGLSRPTCTL 1156 9******9555.7765499***************************9976 PP == domain 10 score: 8.9 bits; conditional E-value: 9.3e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 L ++s+Gp lpp+ srP sCL T322057_1 1156 LRASSPGPALPPGCVSRPDSCL 1177 7799*****************9 PP == domain 11 score: 18.2 bits; conditional E-value: 1.2e-07 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l + +a L +A +Gp+lp+a+L rP+s L T322057_1 1177 LPTTSLDSVPAHLLAALVGPQLPQAKLPRPRSGL 1210 68899999************************87 PP == domain 12 score: 53.2 bits; conditional E-value: 1.4e-18 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r+ Lqap+ l+++g+s+ps++Lp++saGp++p++gLsrP CL T322057_1 1215 PGSAPALRWCLQAPNGLRPVGSSTPSLGLPATSAGPSRPEVGLSRP--CL 1262 9*********************************************..97 PP == domain 13 score: 15.9 bits; conditional E-value: 6.3e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLs 44 gp Pasr+p q +++ ++l rp+++Lp As+Gp l p + s T322057_1 1293 GPPPASRWPVQ-AQLWLENSLCRPRSCLPGASPGPALAPTAAS 1334 899********.*************************665544 PP == domain 14 score: -1.6 bits; conditional E-value: 0.18 DUF4705 32 AsaGpkl....ppagLsrP 46 A+aGp p++gL rP T322057_1 1383 ATAGPADallqPELGLYRP 1401 8888887778899999998 PP == domain 15 score: 1.3 bits; conditional E-value: 0.023 DUF4705 2 gpAPas.rrpLqapaslqasglsrpsa 27 g+++as +pLq + ++++ ls ps+ T322057_1 1457 GRGWASsSWPLQ-THLQPPGVLSGPSS 1482 78999637****.88888888887776 PP == domain 16 score: 6.1 bits; conditional E-value: 0.00072 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpkl............ppagLsrP 46 a +++ ++ glsr s+++p As+Gpk+ pp++L rP T322057_1 1520 ApqAQLRPHGGLSRLSSCPPTASPGPKRppvggll*aqlgPPGSLCRP 1567 25578889********************55555555555555555555 PP == domain 17 score: -1.7 bits; conditional E-value: 0.2 DUF4705 9 rpLqapaslqasglsrpsa 27 rpLq ++++++ gl rp + T322057_1 1573 RPLQ-AQLQPPGGLCRPKS 1590 9***.99999999888865 PP == domain 18 score: -1.8 bits; conditional E-value: 0.21 DUF4705 7 srrpLqapaslqasgl 22 s +pLq +++l ++ + T322057_1 1624 SSQPLQ-AQLLLPQWP 1638 679***.666555433 PP == domain 19 score: 17.0 bits; conditional E-value: 2.8e-07 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpklp 39 PgpA +++pLqa p +l+ ++rps++LpvAs Gp + T322057_1 1652 PGPAFDFWWPLQAqnltssrplqarppasrrsawarprphsglstps*lsphctlpsPKLLPFGHFGRPSSCLPVASLGPAHS 1734 9*******************************************************************************874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7782.29 // Query: T322057_2 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-46 156.6 271.9 2.8e-18 65.7 10.8 22.6 21 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.2 0.33 5.4e+03 17 46 .. 444 473 .. 436 475 .. 0.83 2 ! 21.3 0.9 1.3e-08 0.00021 27 48 .. 870 891 .. 858 891 .. 0.94 3 ! 4.4 3.1 0.0025 41 2 39 .. 899 936 .. 899 940 .. 0.86 4 ! 37.0 19.2 1.5e-13 2.5e-09 1 50 [] 951 1009 .. 951 1009 .. 0.96 5 ! 15.0 5.8 1.2e-06 0.019 24 49 .. 1004 1029 .. 1004 1031 .. 0.93 6 ! 3.7 5.4 0.0039 64 1 19 [. 1048 1069 .. 1034 1072 .. 0.68 7 ! 4.4 8.9 0.0024 39 1 38 [. 1048 1082 .. 1048 1091 .. 0.75 8 ? -1.5 19.6 0.17 2.7e+03 1 39 [. 1073 1134 .. 1073 1135 .. 0.84 9 ! 4.6 15.3 0.0021 34 1 39 [. 1129 1177 .. 1129 1186 .. 0.87 10 ! 6.4 1.3 0.00057 9.3 1 18 [. 1171 1187 .. 1171 1203 .. 0.75 11 ! 16.2 2.3 5e-07 0.0082 1 26 [. 1204 1228 .. 1204 1230 .. 0.95 12 ! 14.5 14.3 1.7e-06 0.028 1 36 [. 1237 1315 .. 1237 1317 .. 0.75 13 ! 2.6 11.1 0.0092 1.5e+02 2 34 .. 1314 1345 .. 1313 1356 .. 0.83 14 ! 14.2 10.8 2.1e-06 0.034 18 50 .] 1462 1494 .. 1447 1494 .. 0.87 15 ! 23.0 5.9 3.9e-09 6.4e-05 17 50 .] 1494 1527 .. 1493 1527 .. 0.96 16 ! 65.7 10.8 1.7e-22 2.8e-18 1 50 [] 1532 1581 .. 1532 1581 .. 0.99 17 ! 11.8 1.2 1.2e-05 0.19 25 44 .. 1577 1596 .. 1577 1597 .. 0.95 18 ! 16.1 7.3 5.5e-07 0.0089 20 49 .. 1604 1633 .. 1602 1635 .. 0.90 19 ? -0.2 2.0 0.069 1.1e+03 19 46 .. 1644 1675 .. 1642 1678 .. 0.88 20 ? 1.1 3.1 0.026 4.3e+02 4 29 .. 1696 1720 .. 1693 1720 .. 0.88 21 ! 18.3 6.9 1.1e-07 0.0018 2 35 .. 1719 1751 .. 1718 1757 .. 0.93 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.33 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrP 46 +++ +l p++ p +s+ p+ ++L rP T322057_2 444 MAHCSLKLPGSSNPTTSVFPVADRVSLCRP 473 677788889998899999999988999888 PP == domain 2 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 27 aqLpvAsaGpklppagLsrPss 48 + Lp+As+Gp+l+p+gL rPss T322057_2 870 SYLPAASPGPELSPVGLHRPSS 891 67******************98 PP == domain 3 score: 4.4 bits; conditional E-value: 0.0025 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 gp P+sr+ q +l++++l+r s+ ++As +p + + T322057_2 899 GPYPTSRQSPQ-MRLLPHNSLHRHSSIVTMASLDPAPaS 936 67788999888.899********************9854 PP == domain 4 score: 37.0 bits; conditional E-value: 1.5e-13 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpA as++pLqa + ++glsr+s++Lp+ saGp++p++gL rPss+L T322057_2 951 PGPAHASWQPLQAqlflpaasaGPDCHQVGLSRASSCLPAPSAGPSRPQVGLPRPSSSL 1009 9*****************99997888999****************************98 PP == domain 5 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 rps+ L +As+G k p ++LsrPss+ T322057_2 1004 RPSSSLSAASPGAKVPRVSLSRPSSS 1029 7**********************975 PP == domain 6 score: 3.7 bits; conditional E-value: 0.0039 DUF4705 1 PgpAPasrrpLqa...paslqa 19 PgpA ++rpLqa p +l++ T322057_2 1048 PGPAFDFWRPLQAstrPGLLPP 1069 6777777777776666555554 PP == domain 7 score: 4.4 bits; conditional E-value: 0.0024 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpA ++rpLq as ++ l p a+ ++Asa ++ T322057_2 1048 PGPAFDFWRPLQ--ASTRPG-LLPPEACTGPASASQQT 1082 9***********..666665.77888888888887765 PP == domain 8 score: -1.5 bits; conditional E-value: 0.17 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrps..aqLpvAsaGpklp 39 +gpA as++ L+a a l++ + s+++ ++L+ A++Gp++p T322057_2 1073 TGPASASQQTLHAqlalaslrppqskapasrplrQAQLPPASASSGPwgSFLTTAFPGPVFP 1134 799999999999999999999999999999988877788888887764489********997 PP == domain 9 score: 4.6 bits; conditional E-value: 0.0021 DUF4705 1 PgpAPasrrpLqa........paslqasg.lsrpsaqLpvAsaGpkl.p 39 Pgp +rrpL+a p+ l++sg + ++ ++Lp+As+Gp++ + T322057_2 1129 PGPVFPFRRPLRAqnllklasPDPLAPSGrPLQAQLFLPAASPGPTPaS 1177 7888889**************8888777549**************9854 PP == domain 10 score: 6.4 bits; conditional E-value: 0.00057 DUF4705 1 PgpAPasrrpLqapaslq 18 Pgp Pas++pL ++ l+ T322057_2 1171 PGPTPASQQPLW-TQCLP 1187 9**********9.77766 PP == domain 11 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T322057_2 1204 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1228 9***********.9***********7 PP == domain 12 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqa...........................................paslqasglsrpsaqLpvAsaGp 36 P+pA+asrrpLqa + +l++ gl rps++ AsaGp T322057_2 1237 PRPAWASRRPLQAqvvlksaspgpasqqvsklfwlsscpapnrlcrprtfssqalrAHLLPPGGLYRPSSGWRTASAGP 1315 99*********************77777777777777777777777777777777777777777777777777777776 PP == domain 13 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 gpA as+ pLq +++ +++++ + + +p++++ T322057_2 1314 GPALASQGPLQ-AQLSPPQRPPGAKSLPPASTG 1345 9**********.888888888888887777765 PP == domain 14 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp+ srP s L T322057_2 1462 PQVGLSRPTCSLPASSPGPALPPGCVSRPNSGL 1494 899***************************987 PP == domain 15 score: 23.0 bits; conditional E-value: 3.9e-09 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++ qLp+A +Gp+lp+a+L rPss L T322057_2 1494 LPTRSLDSAPPQLPAALVGPQLPEAKLPRPSSGL 1527 899*****************************87 PP == domain 16 score: 65.7 bits; conditional E-value: 1.7e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+srps++Lp+AsaGp++p++gLsrPss+L T322057_2 1532 PGSAPALRQRLQAPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRPSSSL 1581 9***********************************************98 PP == domain 17 score: 11.8 bits; conditional E-value: 1.2e-05 DUF4705 25 psaqLpvAsaGpklppagLs 44 ps+ Lp+AsaG ++p++gL+ T322057_2 1577 PSSSLPAASAGLSRPQVGLE 1596 99****************96 PP == domain 18 score: 16.1 bits; conditional E-value: 5.5e-07 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssC 49 +gl ps+ L +As+G klp ++LsrPss+ T322057_2 1604 VGLPGPSSVLSAASPGAKLPRVSLSRPSSS 1633 67888**********************975 PP == domain 19 score: -0.2 bits; conditional E-value: 0.069 DUF4705 19 asglsrpsaqLpvAsaGpkl....ppagLsrP 46 a g+ r s + ++++G + pp+gL rP T322057_2 1644 AHGSRRSSQAPLLTFGGLFRprt*PPVGLCRP 1675 67888899999999***99999999*****99 PP == domain 20 score: 1.1 bits; conditional E-value: 0.026 DUF4705 4 APasrrpLqapaslqasglsrpsaqL 29 Pas r L ap q+s+ls +sa++ T322057_2 1696 RPASSR-LTAPSPVQSSCLSATSAGP 1720 599999.*99999*******999976 PP == domain 21 score: 18.3 bits; conditional E-value: 1.1e-07 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaG 35 gpAPa+++pL q + +++glsrp++ Lp+As++ T322057_2 1719 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAASWP 1751 9********9966...******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7896.73 // Query: T322057_3 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-20 71.3 240.3 1.5e-06 28.1 6.1 21.0 18 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 1.0 0.0002 3.3 4 24 .. 869 889 .. 868 905 .. 0.90 2 ? -0.6 2.7 0.086 1.4e+03 1 25 [. 919 942 .. 919 942 .. 0.75 3 ? -1.0 0.4 0.12 2e+03 41 49 .. 958 966 .. 948 967 .. 0.75 4 ? -1.8 1.1 0.22 3.5e+03 7 15 .. 967 974 .. 961 980 .. 0.76 5 ! 14.5 1.3 1.7e-06 0.027 1 14 [. 982 994 .. 982 1001 .. 0.90 6 ! 3.4 18.0 0.005 82 1 50 [] 1003 1068 .. 1003 1068 .. 0.88 7 ? -7.3 17.7 1 1.6e+04 3 31 .. 1039 1114 .. 1037 1117 .. 0.62 8 ? 2.3 9.9 0.011 1.8e+02 6 49 .. 1123 1165 .. 1120 1166 .. 0.91 9 ! 4.3 13.1 0.0026 43 13 42 .. 1202 1233 .. 1165 1252 .. 0.68 10 ! 28.1 6.1 9.4e-11 1.5e-06 21 50 .] 1268 1297 .. 1255 1297 .. 0.92 11 ! 19.1 16.1 6.2e-08 0.001 1 40 [. 1302 1340 .. 1302 1345 .. 0.92 12 ! 5.5 7.8 0.0011 18 16 43 .. 1470 1498 .. 1450 1505 .. 0.74 13 ! 17.4 6.0 2.1e-07 0.0034 1 26 [. 1521 1545 .. 1521 1547 .. 0.96 14 ! 12.0 0.5 1.1e-05 0.17 2 15 .. 1555 1567 .. 1555 1574 .. 0.82 15 ! 14.6 0.7 1.6e-06 0.026 1 13 [. 1575 1587 .. 1575 1605 .. 0.87 16 ! 6.5 12.2 0.00054 8.8 1 46 [. 1607 1653 .. 1607 1655 .. 0.79 17 ! 2.5 0.7 0.0094 1.5e+02 29 50 .] 1657 1679 .. 1657 1679 .. 0.86 18 ! 16.5 16.7 4.1e-07 0.0067 2 39 .. 1685 1744 .. 1684 1751 .. 0.90 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T322057_3 869 APTSRQPLQAQNFLQSASTDQ 889 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.086 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T322057_3 919 TGTAPSLQWPL*tQ---LLPPSLLSRP 942 799*******9744...6666666665 PP == domain 3 score: -1.0 bits; conditional E-value: 0.12 DUF4705 41 agLsrPssC 49 ++LsrPss+ T322057_3 958 GSLSRPSSS 966 578888886 PP == domain 4 score: -1.8 bits; conditional E-value: 0.22 DUF4705 7 srrpLqapa 15 srrpLq ++ T322057_3 967 SRRPLQ-AQ 974 89****.65 PP == domain 5 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 1 PgpAPasrrpLqap 14 PgpAPasrrpLq + T322057_3 982 PGPAPASRRPLQ-A 994 9***********.5 PP == domain 6 score: 3.4 bits; conditional E-value: 0.005 DUF4705 1 PgpAPasrrpLqa.............pasl......qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 PgpAPasrrpL+ pas+ +a ++rps + ++++G +p + P+sCL T322057_3 1003 PGPAPASRRPLRVqkflesaspgpapPASQclfrpsPAHASGRPSQAPLLTFGGLCRP---RQGPASCL 1068 9***********999**********97777666666778889************9999...88899998 PP == domain 7 score: -7.3 bits; conditional E-value: 1 DUF4705 3 pAPasrrpLqa...............................................paslqasglsrpsaqLpv 31 pA as rp qa p +l+ +++rps++Lpv T322057_3 1039 PAHASGRPSQAplltfgglcrprqgpasclpkpaqaqplphsrlstps*lsphcglpsPKLLPLGRFGRPSSRLPV 1114 6666666666444444444444444444444444446666677777888888888887888888888888888887 PP == domain 8 score: 2.3 bits; conditional E-value: 0.011 DUF4705 6 asrrpLqapaslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 s+rp q ++ ++ gls p+ + +s++ + pp++LsrPss+ T322057_3 1123 SSQRPFQ-APFFPSGGLSGPR---TSSSWPLQThlhPPGVLSRPSSS 1165 59*****.************9...679999998899*********97 PP == domain 9 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 13 a..paslqasglsrpsaqLpvAsaGpklppag 42 a ++ ++ glsr s+++p+ s+Gpk +pa+ T322057_3 1202 ApqAQVRPHGGLSRISSCPPMVSPGPKWSPAS 1233 244666699*******************5543 PP == domain 10 score: 28.1 bits; conditional E-value: 9.4e-11 DUF4705 21 glsrpsaqLpvAsaGpklppagLsrPssCL 50 ++ ++aqLp A++Gp+l+pa+L+ P+sCL T322057_3 1268 FFGLAPAQLPTAFVGPELSPAKLFGPTSCL 1297 599**************************9 PP == domain 11 score: 19.1 bits; conditional E-value: 6.2e-08 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklpp 40 +gpA a+++pLq +++l+++glsrps+++ +Gp++ p T322057_3 1302 TGPALAGEQPLQ-APLLPPRGLSRPSSRPHSGLPGPSPCP 1340 8***********.***********************9843 PP == domain 12 score: 5.5 bits; conditional E-value: 0.0011 DUF4705 16 slqasglsrpsaqLpvAsaGpkl.ppagL 43 + +++++ r+ ++Lp+As+Gp++ ++ gL T322057_3 1470 LAASRRPLRAQLFLPAASPGPTPaSQQGL 1498 3356889***************9887776 PP == domain 13 score: 17.4 bits; conditional E-value: 2.1e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA asr+pLq +++l++ + srp T322057_3 1521 PGPAQASRWPLQ-AQLLPSDSVSRPQ 1545 9***********.***********96 PP == domain 14 score: 12.0 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqapa 15 gpA+asr+pLqa + T322057_3 1555 GPAWASRQPLQA-Q 1567 9**********4.4 PP == domain 15 score: 14.6 bits; conditional E-value: 1.6e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpLqa T322057_3 1575 PGPAPASRRPLQA 1587 9***********7 PP == domain 16 score: 6.5 bits; conditional E-value: 0.00054 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl..ppagLsrP 46 PgpAP srrpLq + l + +++ ++ vAs Gp +gL rP T322057_3 1607 PGPAPSSRRPLQVQNFLESASPGPAPPA-SVASFGPAQlmALGGLPRP 1653 9***********999*****99888765.4566666544777778777 PP == domain 17 score: 2.5 bits; conditional E-value: 0.0094 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T322057_3 1657 LLVASSGPELdLQSAFAGPASCL 1679 789*******8677888999998 PP == domain 18 score: 16.5 bits; conditional E-value: 4.1e-07 DUF4705 2 gpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T322057_3 1685 GPASASQRTLHAqlalaslhppqskapafrplrqAQLLPASGLFRPSSFLTTAFPGPVFP 1744 8999999999999999999999999999999999************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 7671.11 // Query: T336370_1 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 9.9 6.5 11.3 19 5.5 11.3 1.4 1 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 11.3 0.0012 19 19 67 .. 423 471 .. 374 484 .. 0.54 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0012 RNA_pol_Rpc4 19 avsaaeddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkk 67 ++++++++k+e + +++k++++e++k +ke ++ ++ek+ k++++ kk T336370_1 423 ERKKRQKEKKERERRKKKKERKKERKKRKKERKERKKEKERKTEKERKK 471 2333333333333333333333333333333333333222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2221 (0.136208); expected 326.1 (0.02) Passed bias filter: 684 (0.0419477); expected 326.1 (0.02) Passed Vit filter: 290 (0.0177849); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.38s 00:00:01.56 Elapsed: 00:00:00.65 # Mc/sec: 3380.18 // Query: T336370_2 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.8 8.1 14.5 2.8 7.5 14.5 1.2 1 AAA_11 AAA domain 6.3 6.3 6.2 9.1 5.8 6.2 1.1 1 Hydrolase_3 haloacid dehalogenase-like hydrolase 8.5 6.7 10.2 22 5.4 10.2 1.6 1 RNA_pol_Rpc4 RNA polymerase III RPC4 Domain annotation for each model (and alignments): >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 14.5 0.00051 2.8 90 189 .. 379 472 .. 367 478 .. 0.68 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00051 AAA_11 90 vRvgneereriseavksvsleekvekrlekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesl 189 v++ +e ++ ++ sl +k+++++e + k + + + ++ +++++k+ r++ ++ +kek++++++k+++k+++er+k kkerk+ +++ +++e++l T336370_2 379 VKMAAER-----TQQHPWSLHRKIKSCMEYLH-KHNENLRSYRMSDTYKKKERKDRKKRKKEKEERKRKKERKKERKERKKGKKERKRKKERQRKKERNL 472 4444444.....56667777777777776655.4444455555666666666667777777777888888888888888888888888888888887776 PP >> Hydrolase_3 haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.2 0.0017 9.1 81 139 .. 394 451 .. 380 474 .. 0.66 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0017 HHHHHHHHHHHHHTTCEEEEEESSEEEESTT.......THHHHHHHHHCHCTCEEEESHHHHHCH CS Hydrolase_3 81 kedvkeiikllkennveillytedkvyvlnk......eksekkkkeeektkkkkeeidseeeled 139 ++++k+++++l+++n ++ y+ +++y +++ + ++ek+++k+++ +++e +e+ T336370_2 394 HRKIKSCMEYLHKHNENLRSYRMSDTYKKKErkdrkkR-------KKEKEERKRKKERKKERKER 451 56899**************************5433221.......22222222222222222222 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 10.2 0.004 22 26 79 .. 421 471 .. 393 477 .. 0.53 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.004 RNA_pol_Rpc4 26 dkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklks 79 +k+e k+ ++ k+++ee++++++++++ +e kk kk+ + kk+ +++k++ + T336370_2 421 KKKERKDRKKRKKEKEERKRKKERKKERKERKKGKKERKRKKERQRKKER---N 471 33344444444444444444444444444444444444433333333333...3 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2237 (0.137189); expected 326.1 (0.02) Passed bias filter: 663 (0.0406599); expected 326.1 (0.02) Passed Vit filter: 244 (0.0149638); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.52 # Mc/sec: 4225.23 // Query: T336370_3 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0039 17.2 0.8 0.0064 16.5 0.8 1.4 1 Eapp_C E2F-associated phosphoprotein ------ inclusion threshold ------ 0.094 12.3 5.1 0.13 11.8 5.1 1.1 1 AAA_11 AAA domain 1.3 8.6 7.4 2.3 7.8 7.4 1.3 1 Connexin Connexin Domain annotation for each model (and alignments): >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.8 1.2e-06 0.0064 54 114 .. 404 463 .. 399 622 .. 0.72 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 1.2e-06 Eapp_C 54 yknqYramfvlnvkvdkeevlkykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeee 114 ++n r ++ + +++++ +++e +++k+kkk+k++kk+++ke+++++e+++e+e +++ T336370_3 404 FTNTMRISEAIECLTHTKRKKEKTERKERKRKKKEKERKKERKKEKKERKERKKERE-RKK 463 566666666777766666665555444433333333333333322222222222222.222 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 5.1 2.4e-05 0.13 127 188 .. 407 468 .. 316 473 .. 0.80 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 2.4e-05 AAA_11 127 akeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaees 188 + +i++++e l ++ r++e++e+ke+++k+kek+++k++++++k +kerk+ +++ + +e++ T336370_3 407 TMRISEAIECLTHTKRKKEKTERKERKRKKKEKERKKERKKEKKERKERKKERERKKDRERK 468 44666777777777777777777777777777777777777777777776666666655554 PP >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 7.4 0.00042 2.3 95 140 .. 418 463 .. 403 502 .. 0.58 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00042 Connexin 95 lhkeakeekrkekekkkekkekkeeekkkkkekkkkekeeskkrrl 140 +h+++k+ek+++ke+k++kkek++++++kk++k++ke++++++r++ T336370_3 418 THTKRKKEKTERKERKRKKKEKERKKERKKEKKERKERKKERERKK 463 3444444444443333333333333333222222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2191 (0.134368); expected 326.1 (0.02) Passed bias filter: 681 (0.0417638); expected 326.1 (0.02) Passed Vit filter: 267 (0.0163743); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.52 # Mc/sec: 4225.23 // Query: T183183_1 [L=5008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1515 (0.0929106); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.34u 0.37s 00:00:02.71 Elapsed: 00:00:00.67 # Mc/sec: 21383.64 // Query: T183183_2 [L=5007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1661 (0.101864); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 89 (0.00545811); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.09u 0.41s 00:00:03.50 Elapsed: 00:00:00.83 # Mc/sec: 17258.04 // Query: T183183_3 [L=5007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1572 (0.0964062); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.57u 0.43s 00:00:03.00 Elapsed: 00:00:00.71 # Mc/sec: 20174.90 // Query: T111550_1 [L=1307] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1307 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.47 # Mc/sec: 7955.54 // Query: T111550_2 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7185.08 // Query: T111550_3 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.48 # Mc/sec: 7783.84 // Query: T222944_1 [L=2093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 9 6.0 10.3 16 5.2 1.9 2.7 2 zf-C2H2_10 C2H2 zinc-finger Domain annotation for each model (and alignments): >> zf-C2H2_10 C2H2 zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 1.9 0.00096 16 5 12 .. 4 11 .. 3 11 .. 0.86 2 ? 4.7 1.5 0.0014 23 5 12 .. 200 207 .. 199 207 .. 0.85 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.00096 zf-C2H2_10 5 tCSYChet 12 tCSYCh + T222944_1 4 TCSYCHHP 11 8*****75 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0014 zf-C2H2_10 5 tCSYChet 12 +CSYCh + T222944_1 200 ICSYCHHP 207 6*****75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 11514.84 // Query: T222944_2 [L=2093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.51 # Mc/sec: 11740.62 // Query: T222944_3 [L=2093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 11740.62 // Query: T052145_1 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 8348.95 // Query: T052145_2 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 8181.97 // Query: T052145_3 [L=1430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.21s 00:00:00.92 Elapsed: 00:00:00.50 # Mc/sec: 8181.97 // Query: T165129_1 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 742 (0.0455047); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 4483.80 // Query: T165129_2 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.1 8.8 10 5.9 0.2 3.4 5 PELOTA_1 PELOTA RNA binding domain Domain annotation for each model (and alignments): >> PELOTA_1 PELOTA RNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.1 0.13 2.1e+03 40 52 .. 124 136 .. 121 164 .. 0.58 2 ? 0.3 0.2 0.036 5.9e+02 37 56 .. 160 179 .. 138 182 .. 0.56 3 ? 5.3 0.6 0.001 16 37 73 .. 160 196 .. 149 201 .. 0.82 4 ? 5.9 0.2 0.00063 10 37 66 .. 182 211 .. 175 218 .. 0.87 5 ? 5.7 0.5 0.00074 12 39 69 .. 226 256 .. 216 269 .. 0.54 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.13 PELOTA_1 40 kvlvrdeeepdla 52 ++l+r+ ++p++ T165129_2 124 HILIRHLNTPKHI 136 5555554444332 PP == domain 2 score: 0.3 bits; conditional E-value: 0.036 PELOTA_1 37 vPekvlvrdeeepdlahlll 56 +P+++l+r ++p++ +++l T165129_2 160 TPKHILIRLLNTPKHILIRL 179 35555555555555555544 PP == domain 3 score: 5.3 bits; conditional E-value: 0.001 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevpdlpY 73 +P+++l+r ++p++ +++lL k++ +++ ++ +Y T165129_2 160 TPKHILIRLLNTPKHILIRLLNTPKHILIRHLNTPKY 196 6999999999999999999999999999888877766 PP == domain 4 score: 5.9 bits; conditional E-value: 0.00063 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r+ ++p+ ++++L k++ ++ T165129_2 182 TPKHILIRHLNTPKYILIRHLSTPKHILIR 211 79*********************9999775 PP == domain 5 score: 5.7 bits; conditional E-value: 0.00074 PELOTA_1 39 ekvlvrdeeepdlahlllLakekgvpveevp 69 +++l+r+ ++p++ +++lL k++ +++ + T165129_2 226 KHILIRHLNTPKHILIRLLNTPKHTLIRHLN 256 5555555555555555555555544444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4571.72 // Query: T165129_3 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1582 (0.0970195); expected 326.1 (0.02) Passed bias filter: 324 (0.01987); expected 326.1 (0.02) Passed Vit filter: 117 (0.00717527); expected 16.3 (0.001) Passed Fwd filter: 27 (0.00165583); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.60 # Mc/sec: 3885.96 // Query: T267165_1 [L=1413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.50 # Mc/sec: 8084.71 // Query: T267165_2 [L=1412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 7621.68 // Query: T267165_3 [L=1412] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-27 96.9 2.0 1.5e-27 96.4 2.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 4.3e-07 29.3 0.1 8.7e-07 28.3 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.4 2.0 1.9e-31 1.5e-27 14 222 .] 366 603 .. 348 603 .. 0.90 Alignments for each domain: == domain 1 score: 96.4 bits; conditional E-value: 1.9e-31 ....-THHHHCTB--.............-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET....... CS RVT_1 14 llsvdykalnkliakrLkdvl....ekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinli 105 l+++++k+lnk++a+ + +kl+ ++q+gf pg +++ ++ ++ +++++ k k+ +++++D +kaF+++++++ l +l++++++++ +++ T267165_3 366 LMNINVKLLNKILAN----QI*qhiKKLIYHDQVGFIPGMQVWFNIsksiNVTHHINRTKDKNYMIISIDTEKAFNKIQHPFTL-TLNQLGIEETYLKIT 460 7899***********....334444***********************987777887788888*******************99.68999********** PP ..................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT CS RVT_1 106 ksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesg 195 ++++ ++++++ ng+ e + +g++q ++lSP+ f ++++ r +r++ ++v+l+++aDD++++ +++ +q+ l+ + + + g T267165_3 461 RAIYDKPTANIIRNGQMLEAFLLRTGTRQRCPLSPFPFYILLEIPARAIRQAKeikgiqigrEEVKLSLFADDMILYLENPIVlAQKFLQLINYFSNVLG 560 ****************88*********************************88***************************777699999****9****** PP --BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +kin +K+ + l+ ++ ++++kyLG++l T267165_3 561 YKINVQKSLASLYtnnsqaeskirKAipfttVTQKIKYLGIQL 603 ***********99999998887761155678*********986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.3 0.1 1.1e-10 8.7e-07 1 15 [. 1073 1087 .. 1073 1089 .. 0.96 Alignments for each domain: == domain 1 score: 28.3 bits; conditional E-value: 1.1e-10 DUF1725 1 kFagKWMELEnIILS 15 +F+g+WMELE IILS T267165_3 1073 SFVGTWMELEAIILS 1087 7*************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1412 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 7920.57 // Query: T112948_1 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4457.17 // Query: T112948_2 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4369.78 // Query: T112948_3 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4369.78 // Query: T369317_1 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 15132.28 // Query: T369317_2 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 15682.55 // Query: T369317_3 [L=3015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 15402.50 // Query: T124787_1 [L=3324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16683.16 // Query: T124787_2 [L=3323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 16390.58 // Query: T124787_3 [L=3323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 16678.14 // Query: T138166_1 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 7062.32 // Query: T138166_2 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.60 # Mc/sec: 6002.97 // Query: T138166_3 [L=1259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 18.0 0.0 0.0011 18.0 0.0 1.1 1 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 6.7e-08 0.0011 120 173 .. 14 160 .. 1 865 [. 0.75 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 6.7e-08 PHO4 120 lswvlsPllggllaallfllvrrlil...............lkaalkllpllvlltvainaflilyk..............l.................. 172 + +v+ ++ +++ ++++++v+ +++ + + + ++ ++v+++++++++ ++++ l T138166_3 14 MVMVMVTMVMVVAMVTMVIVVMVVVVvmvvmvmmvmmvvivMAMVMVTMVVMVMVVAMVMTMTMMMQllsv**alaacqvlLqtcsqsaqticctgnvsp 113 2222222221111111111111111111111000000111122222333333333333333333333444444444444430344444444444444444 PP PHO4 173 ..............................................e 173 + T138166_3 114 flwmrliglkgqaqghrvanr*haavaglslsvqpqqerswegqerK 160 44444444444445555555555555555555555544444444440 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1259 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1636 (0.100331); expected 326.1 (0.02) Passed bias filter: 341 (0.0209125); expected 326.1 (0.02) Passed Vit filter: 152 (0.00932172); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.45u 0.35s 00:00:01.79 Elapsed: 00:00:00.86 # Mc/sec: 4188.12 // Query: T227485_1 [L=372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1372 (0.0841408); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 1637.28 // Query: T227485_2 [L=372] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (372 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1513 (0.0927879); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:00.69 # Mc/sec: 1542.36 // Query: T227485_3 [L=371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1108 (0.0679504); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.71 # Mc/sec: 1494.88 // Query: T274108_1 [L=8781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0073 15.7 0.0 0.012 15.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 7.3e-07 0.012 137 181 .. 683 727 .. 677 727 .. 0.94 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 7.3e-07 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + r++t dp+ + + + fi+qsa+di+ T274108_1 683 YNNPAQFMARLAATLRHFTALDPKMSKGCLILKIHFITQSAPDIK 727 578*************************9**************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.66u 0.36s 00:00:03.02 Elapsed: 00:00:00.84 # Mc/sec: 29905.89 // Query: T274108_2 [L=8781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 596 (0.036551); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.76u 0.45s 00:00:03.21 Elapsed: 00:00:00.95 # Mc/sec: 26443.10 // Query: T274108_3 [L=8780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-83 278.5 5.0 6.3e-83 278.5 5.0 1.6 2 Transposase_22 L1 transposable element 5.7e-48 163.2 5.3 4.3e-47 160.3 2.5 2.6 3 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 1.1e-07 31.1 0.7 2.4e-07 30.1 0.7 1.6 1 DUF1725 Protein of unknown function (DUF1725) 0.002 18.0 2.0 0.002 18.0 2.0 2.2 2 zf-CCHC Zinc knuckle 0.0093 16.1 0.0 0.018 15.2 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 278.5 5.0 1.9e-86 6.3e-83 168 359 .. 2731 2924 .. 2726 2933 .. 0.93 2 ? -2.6 0.0 0.52 1.7e+03 274 322 .. 7909 7961 .. 7906 7964 .. 0.73 Alignments for each domain: == domain 1 score: 278.5 bits; conditional E-value: 1.9e-86 HHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHH.HT---EEEEEEESSSS-TSSSS--EEEEEESSHH CS Transposase_22 168 erekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkk.eanviiqeiyrtPnrqdskrassrhiivrttkvl 259 ++k++ki+eqslq+i+d+vkrPnl liGv es+ e+++klen+l++i +enfPnl++ n++iq+i+rtP+r++s+ra++rhii tkv+ T274108_3 2731 LEKKKVKINEQSLQEIWDYVKRPNLHLIGVRESDGENGTKLENTLHDINQENFPNLAR*A-NIQIQDIQRTPQRHSSRRATPRHIIFICTKVE 2822 467999**************************************************9555.89****************************** PP HHHHHHHHHHHHS-EEETTEEEEEEE---HHHH.HHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH.HHH CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetl.karrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal.krl 350 +k+k+l+a+rekGrvt kGkPirltadlsaetl rrew+++++ilkek fqP ++yPakl +i++Geik f dk++lrd+l+trPal + l T274108_3 2823 MKEKMLRAAREKGRVTHKGKPIRLTADLSAETL*A-RREWGPIFNILKEKYFQPSISYPAKLNFISEGEIKSFTDKQMLRDFLTTRPAL*ELL 2914 *******************************9555.9***************************************************97766 PP HTT.T-SSXS CS Transposase_22 351 lke.knerkd 359 k ++er++ T274108_3 2915 KKAlNMERNN 2924 5555666665 PP == domain 2 score: -2.6 bits; conditional E-value: 0.52 EEETTEEEEEEE---HHHHHHHHHH....HHHHHHHHHTT---EEETTTEEEE CS Transposase_22 274 vtlkGkPirltadlsaetlkarrew....tdviqilkekkfqPrllyPaklsi 322 vt+ + ++ adlsaet k + + k + qP +lyP k+ + T274108_3 7909 VTYFIRVVKKIADLSAETHKPETAA*qg*HAETKQNKTQSSQPSILYPVKIYF 7961 67777778888888888888877744444344555688899999999999877 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.0 0.022 73 65 86 .. 1114 1135 .. 1077 1136 .. 0.73 2 ! 160.3 2.5 1.3e-50 4.3e-47 1 222 [] 3472 3728 .. 3472 3728 .. 0.96 3 ? -2.8 0.1 0.99 3.2e+03 19 71 .. 4001 4051 .. 3990 4061 .. 0.56 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.022 HTS--EEEEEEBCCGCCCSBB- CS RVT_1 65 kkkaklllklDlkkaFdsvple 86 ++ ++++ lDlk aF+++pl+ T274108_3 1114 PASTTHYSVLDLKHAFFTIPLH 1135 45679***************97 PP == domain 2 score: 160.3 bits; conditional E-value: 1.3e-50 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rp sl+++d k+l+k++a+r+++++++l++++q+gf pg +++ ++ ++++++ + + k+++++++ +kaFd+++ ++ l T274108_3 3472 IPKPGrdtanKENFRPTSLMNIDAKILSKILANRIQQHIKELIHHDQVGFIPGMQVWFNLcksiNVIHHKKRTNDKNHMIISIVAEKAFDKIQQPFML 3569 89999999999****************************************************9999999999999********************** PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHH CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskske 178 ++l+++ ++ + +++i++++ ++++++ +ng++ e ++ k+g++qG+ lS llfn++++ l r +r++ ++v+l+++aDD++++ ++++ T274108_3 3570 KTLNKLAIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCLLSLLLFNILLEVLARAIRQEKeikdiqlgkEEVKLSLFADDMIVYLENPT 3667 ********************************99*********************************99***************************88 PP H.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 179 e.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +q+ l+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T274108_3 3668 VsAQNPLKLISNFSKVSGYKINVQKSQAFLYtnnrktesqimSElpfiiASKRIKYLGIQL 3728 77***************************99999888877661156678*********986 PP == domain 3 score: -2.8 bits; conditional E-value: 0.99 THHHHCTB--.........-------HHHH................HCCHTS--EE CS RVT_1 19 ykalnkliakrLkdvlekllsenqpgfrpgrstldav...eellkalkkkkkakll 71 +k l ++i+k L+++++k+++++ +g +++ + + +++++++k+ T274108_3 4001 DKGLTSRIHKELEQIYKKKIKQPHQKVGKG--Y-EQTffkR--SHLCHQQTQKKCS 4051 666777777777777766666555555444..3.3333322..2222344444443 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.7 7.2e-11 2.4e-07 1 19 [] 4197 4215 .. 4197 4215 .. 0.98 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 7.2e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+WM+LE+IILS+ sQ T274108_3 4197 SFVGTWMKLETIILSKLSQ 4215 7*****************9 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 2.0 6.2e-07 0.002 2 18 .] 796 812 .. 795 812 .. 0.94 2 ? -6.7 3.1 5 1.6e+04 2 7 .. 7117 7122 .. 7117 7123 .. 0.83 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 6.2e-07 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 Cy+C + GH+a++Cp+ T274108_3 796 SCYTCWKSGHWAKECPQ 812 6***************7 PP == domain 2 score: -6.7 bits; conditional E-value: 5 CTSSSS CS zf-CCHC 2 kCynCG 7 +C nC+ T274108_3 7117 ACNNCN 7122 5****8 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 5.5e-06 0.018 6 89 .. 884 962 .. 879 962 .. 0.88 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 5.5e-06 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllG 89 ++++ ++ k+i +l+ A+++ ++ + P + a+ ++ Gi g+ ++ ++ ++++++++ + + s+l++p++pv+llG T274108_3 884 RVTLTVEDKPIPFLINMEATHSTLPSFQGPVS----LASITVVGIDGQASKPLKTP-QLWCQFRQYSFKHSFLVIPTCPVPLLG 962 577888899***********************....*************8888877.5667777777778************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.62u 0.37s 00:00:02.99 Elapsed: 00:00:01.01 # Mc/sec: 24869.39 // Query: T334442_1 [L=1288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.62 # Mc/sec: 5943.14 // Query: T334442_2 [L=1287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 6574.80 // Query: T334442_3 [L=1287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.55 # Mc/sec: 6694.34 // Query: T193719_1 [L=180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-06 27.3 0.0 1.9 8.5 0.0 3.8 4 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 0.0 0.00012 1.9 47 70 .. 8 31 .. 5 40 .. 0.76 2 ! 7.0 0.0 0.00036 5.9 34 63 .. 45 74 .. 32 78 .. 0.59 3 ? -1.5 0.0 0.16 2.6e+03 50 63 .. 101 114 .. 97 115 .. 0.52 4 ! 7.3 0.0 0.00028 4.6 47 73 .. 143 170 .. 140 178 .. 0.57 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00012 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg 70 ++++++++ ++++g +l++ +++g T193719_1 8 EWNGMEWNGMEWKGINLNGMEWNG 31 677888888888888888888775 PP == domain 2 score: 7.0 bits; conditional E-value: 0.00036 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdl 63 + ++++ + s +++++++k +++sg+++ T193719_1 45 NGMEWNGINTSGKEWNGVEWKGTEWSGMEW 74 444455555555566666666666666665 PP == domain 3 score: -1.5 bits; conditional E-value: 0.16 Pentapeptide_4 50 eadlkrasFsgcdl 63 + ++k +++ g++l T193719_1 101 QPEWKGMEWNGMEL 114 44555666665555 PP == domain 4 score: 7.3 bits; conditional E-value: 0.00028 Pentapeptide_4 47 dfaeadlkrasFsgcdlknvnfsg.klk 73 ++++++++ +++ g+++++ +++g +++ T193719_1 143 NWNGIEWNAMQLNGMEWNQQEWNGmEWN 170 4556666666666666666665544544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 953.61 // Query: T193719_2 [L=180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 953.61 // Query: T193719_3 [L=180] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0003 20.7 0.0 6.9 6.7 0.0 3.6 4 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.21 3.4e+03 50 70 .. 7 27 .. 6 32 .. 0.58 2 ! 6.2 0.0 0.00063 10 51 72 .. 38 60 .. 35 75 .. 0.54 3 ! 3.9 0.0 0.0033 54 34 66 .. 106 138 .. 91 149 .. 0.73 4 ! 6.7 0.0 0.00042 6.9 36 70 .. 143 177 .. 137 180 .] 0.81 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.21 Pentapeptide_4 50 eadlkrasFsgcdlknvnfsg 70 +++++ +++ g++ ++ +++g T193719_3 7 GMEWNGMEWNGMERNKPEWNG 27 566666777766666655554 PP == domain 2 score: 6.2 bits; conditional E-value: 0.00063 Pentapeptide_4 51 adlkrasFsgcdlknvnfsg.kl 72 ++++ +++ g+++++ +++g ++ T193719_3 38 MQWNGMEWNGMEWNQHEWKGmEW 60 44444444444444444443333 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0033 Pentapeptide_4 34 snvnFdkcllsdvdfaeadlkrasFsgcdlknv 66 + ++++ +l++ ++++++++ ++ sg+++++ T193719_3 106 NGMEWNGIELNQPEWNGMEWSGINPSGMEWNGM 138 566777778888888888888887777777665 PP == domain 4 score: 6.7 bits; conditional E-value: 0.00042 Pentapeptide_4 36 vnFdkcllsdvdfaeadlkrasFsgcdlknvnfsg 70 +++ + + ++++++ +r+++ g+++++ +++g T193719_3 143 LEWNRMECNAIEWNGMESTRVEWNGMEWNGMEWNG 177 55666777889999999999999999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 872.80 // Query: T358701_1 [L=616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.61 # Mc/sec: 2888.97 // Query: T358701_2 [L=616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 3146.91 // Query: T358701_3 [L=616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 597 (0.0366123); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.67 # Mc/sec: 2630.26 // Query: T316860_1 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1369 (0.0839568); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 4347.44 // Query: T316860_2 [L=851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1659 (0.101742); expected 326.1 (0.02) Passed bias filter: 431 (0.026432); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 3528.36 // Query: T316860_3 [L=850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 3986.40 // Query: T344922_1 [L=674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (674 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 3160.98 // Query: T344922_2 [L=673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.66 # Mc/sec: 2917.18 // Query: T344922_3 [L=673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 3377.79 // Query: T346314_1 [L=1756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-15 56.3 0.4 2.7e-15 56.3 0.4 1.7 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.1 0.25 4.1e+03 179 206 .. 638 667 .. 630 682 .. 0.77 2 ! 56.3 0.4 1.7e-19 2.7e-15 1 84 [. 872 964 .. 872 967 .. 0.95 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.25 H..HHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 179 e..lqelleaveewlkesglkinpeKtklv 206 + q+l++++++ ++ + +n++K k T346314_1 638 DttYQNLWDTFKAVCRGKFIALNAHKRKQG 667 245899999999999999999999998876 PP == domain 2 score: 56.3 bits; conditional E-value: 1.7e-19 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSB CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvp 84 ipK+g ++++Rpisl++++ k ln+++a++++++++kl++++q+ f pg + + ++ ++++ ++ + k+++++++D +kaFd+++ T346314_1 872 IPKPGrdttkKENFRPISLMNINAKMLNNILANQIQQHIKKLIHHDQVSFIPGMQGWFNIgksiNVIHYRNRTNDKNHIIISIDAEKAFDKIE 964 899999999999***************************************************98888888999999**************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 882 (0.0540905); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 8813.36 // Query: T346314_2 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.72 # Mc/sec: 6973.27 // Query: T346314_3 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-100 334.8 17.6 1e-98 330.4 10.6 2.3 2 Transposase_22 L1 transposable element 3.2e-21 75.7 0.8 1.2e-20 73.9 0.1 2.1 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.3e-05 23.3 0.0 8.8e-05 21.9 0.0 1.8 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.04 14.0 0.0 0.093 12.9 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 0.6 0.00018 0.73 30 66 .. 19 55 .. 13 102 .. 0.70 2 ! 330.4 10.6 2.5e-102 1e-98 148 367 .. 111 332 .. 111 333 .. 0.96 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00018 XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 30 sPatteeldpdlkdflelriedikkdfykelkelies 66 + t+ e+++ ++df++l + +++++ ++ el+e T346314_3 19 HLLTATEQSWTENDFDNLTKIGFRRSVITNFLELKED 55 555778*******************976666555553 PP == domain 2 score: 330.4 bits; conditional E-value: 2.5e-102 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS- CS Transposase_22 148 leervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqd 242 +eervs +ed+i+ei+re k rekr+k+++qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii enf nl+++an++iqei+rt +r++ T346314_3 111 VEERVSVIEDQINEIKREDKVREKRVKRNKQSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIPENFLNLARQANIQIQEIQRTSQRHS 205 59********************************************************************************************* PP TSSSS--EEEEEESSHHHHHHHHHHHHHHS.-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHH CS Transposase_22 243 skrassrhiivrttkvlnkdkilkavrekG.rvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktk 336 s+ra++rhii+r+ kv++k+k+l+a rekG t kGk irltadl aetl+arrew+++++ilkek+fqPr++yPakls+i++Geik f dk++ T346314_3 206 SRRATPRHIILRFIKVEMKEKVLRAGREKG*V-THKGKLIRLTADLLAETLQARREWAPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQM 299 ****************************9665.99************************************************************ PP HHHHHTT-HHHHHHHTT..T-SSXSS.XXXXXXX CS Transposase_22 337 lrdylstrPalkrllke..knerkdr.yqaleqa 367 lrd ++trP+l++llke ++e +++ yq+l+++ T346314_3 300 LRDSVTTRPSLQELLKEalNME-RNK*YQPLQKH 332 *****************75555.46788888887 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.9 0.1 2.9e-24 1.2e-20 88 208 .. 967 1097 .. 965 1126 .. 0.93 2 ? -1.4 0.1 0.3 1.2e+03 89 116 .. 1553 1579 .. 1548 1595 .. 0.74 Alignments for each domain: == domain 1 score: 73.9 bits; conditional E-value: 2.9e-24 GGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS CS RVT_1 88 llrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks 176 l++l++++++ + ++i++++ + ++++ +n+++ e ++ k+g++ G++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ T346314_3 967 MLKTLNKLGIDATYFKIIRAIYDKLTANIILNEQKLEAFPLKTGTRKGCPLSPLLFNIALEVLARAIRQEKerkgiqlgnEEVKLSLFADDMIVYLEN 1064 57899*****************************99*********************************99*************************** PP .HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 177 .keelqelleaveewlkesglkinpeKtklvlf 208 ++q+l++ ++++ k sg+kin +K+ ++ + T346314_3 1065 pIVSAQNLIKLISKFSKVSGYKINVQKSPAFIY 1097 6677************************98854 PP == domain 2 score: -1.4 bits; conditional E-value: 0.3 GGGGG-EEET.................. CS RVT_1 89 lrkltafkvptklinliksflstrsfsv 116 ++++++k+p ++in+ik++ t ++ + T346314_3 1553 AKTWNQCKCP-SMINWIKKMWHTYTMEF 1579 5678899999.66******997766554 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.0 2.2e-08 8.8e-05 1 19 [] 1590 1608 .. 1590 1608 .. 0.98 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 2.2e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+ M+LE+IILS+ sQ T346314_3 1590 SFAGTRMKLETIILSKLSQ 1608 7*****************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 2.3e-05 0.093 1 73 [. 368 438 .. 368 470 .. 0.83 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2.3e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfp 73 lt Nv g + + ++ +la+++k++d+ ++qE++ ++ ++l+ + ++ + ++++ va++++++ T346314_3 368 LTLNVKG----LTAPIKRHRLANWIKSQDPSMCCIQETNLTCKDTQRLKIkgWRKIYQANGKQKEATVAIVVSNK 438 6899999....66778899*******************9999988887777744555666666777777777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.70 # Mc/sec: 7172.51 // Query: T212326_1 [L=1495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 7920.26 // Query: T212326_2 [L=1494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.71 # Mc/sec: 6019.83 // Query: T212326_3 [L=1494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.69 # Mc/sec: 6194.32 // Query: T316678_1 [L=688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.4 8.0 8.2 3.8 7.4 8.2 1.2 1 PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus Domain annotation for each model (and alignments): >> PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 8.2 0.00023 3.8 47 87 .. 357 395 .. 343 421 .. 0.74 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00023 PRP9_N 47 ipkksdisknkiykskkskrsrkqillQqhEinlFledykk 87 + ++ +++iyk+++ +r+++q Qq+ ++l+ ++ + T316678_1 357 VA--AQKPSEDIYKNRRRRRQQQQQQQQQQQLDLLFHQRIQ 395 33..488999***********************98876543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 411 (0.0252054); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3028.08 // Query: T316678_2 [L=687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.64 # Mc/sec: 3070.92 // Query: T316678_3 [L=687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.71 # Mc/sec: 2768.16 // Query: T090325_1 [L=3852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 914 (0.056053); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 133 (0.00815651); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.00u 0.43s 00:00:03.43 Elapsed: 00:00:00.95 # Mc/sec: 11599.91 // Query: T090325_2 [L=3852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1033 (0.0633509); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 145 (0.00889243); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.42u 0.45s 00:00:03.87 Elapsed: 00:00:01.05 # Mc/sec: 10495.16 // Query: T090325_3 [L=3852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-45 150.6 26.6 8.8e-38 128.2 13.6 2.7 2 Colipase-like Colipase-like ------ inclusion threshold ------ 2.9 6.4 62.6 5.3 5.5 62.6 1.3 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 5.1 5.6e-14 4.6e-10 15 56 .. 1918 1959 .. 1915 1959 .. 0.95 2 ! 128.2 13.6 1.1e-41 8.8e-38 1 89 [] 1946 2033 .. 1946 2033 .. 0.98 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 5.6e-14 Colipase-like 15 gyeCskksEcksqcClknseskekfCkareiflqClklrkpn 56 g C ++ Ec+s+cC ns ++++C++++iflqCl++rkpn T090325_3 1918 GEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKPN 1959 567*************************************97 PP == domain 2 score: 128.2 bits; conditional E-value: 1.1e-41 Colipase-like 1 ktlllkclklrklngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 kt++l+cl++rk+ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090325_3 1946 KTIFLQCLPWRKPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 2033 69******************************9.99***************************************************97 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 62.6 0.00065 5.3 95 256 .. 849 993 .. 835 1007 .. 0.22 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.00065 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS MIP-T3 95 tkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdk 194 t+r + + + ++e e++++k+ e+ + +e+e e+e++r e+++e++++rer+++++re +++k+ ++++++++ T090325_3 849 TERDRDRERQRQRETETGRQKE-TERGRGREREGETERDR-----------------------RREGETERQRQRERQRQRGRERQRQKE-TETERDRER 923 1222222222222222222221.11222222222222222.......................222222222222222222221111111.111111111 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 195 ekekkkekssksesgkeeerskdeerekead........kgkdretnrateeeeesrkssekkrrsskse 256 e+e ++ + +++e++ e++r+ ++er++++d ++ dr+++r+ ++e e+ +++e++r+ + + T090325_3 924 ETETERGRGREREGETERDRDGERERQRDRDrgrdrdreAERDRDRKRQRQKETERGRQRERQRDRERQR 993 1111111111111111111111111111111000000001111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 934 (0.0572795); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 132 (0.00809518); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.14u 0.44s 00:00:03.58 Elapsed: 00:00:01.01 # Mc/sec: 10910.81 // Query: T229526_1 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-28 96.8 7.7 3.9e-27 94.6 8.1 1.9 2 TMEM191C TMEM191C family 0.0093 16.4 7.2 0.019 15.4 7.2 1.5 1 DUF883 Bacterial protein of unknown function (DUF883) ------ inclusion threshold ------ 0.16 11.4 1.8 0.21 11.0 1.8 1.1 1 Exonuc_VII_L Exonuclease VII, large subunit 0.42 10.3 11.4 0.7 9.5 11.4 1.2 1 IncA IncA protein 0.67 9.9 11.2 1.1 9.2 11.2 1.2 1 ADIP Afadin- and alpha -actinin-Binding 0.83 9.5 10.6 1.1 9.1 10.6 1.1 1 OmpH Outer membrane protein (OmpH-like) 2.7 8.1 15.0 4.3 7.4 15.0 1.2 1 Jnk-SapK_ap_N JNK_SAPK-associated protein-1 3.4 6.0 10.1 5.4 5.3 10.1 1.2 1 FUSC Fusaric acid resistance protein family 4.1 7.9 6.8 11 6.6 6.0 1.9 1 Syntaxin-6_N Syntaxin 6, N-terminal 5 7.3 7.2 7.9 6.6 7.2 1.2 1 TerB_C TerB-C domain 7.1 5.8 9.6 10 5.3 9.6 1.1 1 APG6 Autophagy protein Apg6 Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 3.5 5.2e+03 71 95 .. 16 40 .. 15 51 .. 0.83 2 ! 94.6 8.1 2.6e-30 3.9e-27 51 121 .] 399 469 .. 392 469 .. 0.96 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 3.5 TMEM191C 71 flalpllylvlvkpdalrkglarls 95 f+ l+l+ l l ++ ++ gl+ ++ T229526_1 16 FINLSLIQLRLFDTIFISDGLSVIR 40 8899999999999999999998766 PP == domain 2 score: 94.6 bits; conditional E-value: 2.6e-30 TMEM191C 51 galrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T229526_1 399 SPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 469 5689******************************************************************7 PP >> DUF883 Bacterial protein of unknown function (DUF883) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 7.2 1.3e-05 0.019 2 73 .. 122 196 .. 121 201 .. 0.87 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 1.3e-05 DUF883 2 eleaeleslladleellkeaadeageeaeelReraeea...lerarerlsdaeeavaerakeaaeaaddyVrenP 73 ele+ ++ l a+ e+l ++ +d +++e + lR+r ++a +are++++ +e+v++r +ea ++ +d Vr++P T229526_1 122 ELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAqplQGEAREAARERAERVRRRLEEAERHKEDLVRKSP 196 788999999******************99999886654222579*****************************99 PP >> Exonuc_VII_L Exonuclease VII, large subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 1.8 0.00014 0.21 177 259 .. 108 194 .. 76 216 .. 0.45 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00014 Exonuc_VII_L 177 rlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerl.....kklkerlelleekkerleeleekleal 259 +l++ ++ ++++q+l++l + le+ +++l+++ ++l+e +++l + + +++++ l ++++er e+++++ e++e+ +e l T229526_1 108 QLQKDNRDGRQRKQELEKLMRGLEA-ESESLNQRLQDLSERERSLlR-RRSQAAQPLqgearEAARERAERVRRRLEEAERHKEDLVRK 194 2333333333334444444444443.333344444444444433322.11111111111111222222223333333333333333333 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 11.4 0.00047 0.7 83 176 .. 99 191 .. 78 195 .. 0.79 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00047 IncA 83 lselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrl 176 +++ ++ l +l++ ++ ++r +ele+ + le + esl + l+++ +r sl ++ +++a+ ++ ++ ++e+ ++ r +le+ +++++l T229526_1 99 MAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEA-REAARERAERVRRRLEEAERHKEDL 191 56778888899999999999999999999999999999999999999999999888888888866544.6777777777777777777777666 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 11.2 0.00072 1.1 37 125 .. 98 191 .. 89 196 .. 0.82 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00072 ADIP 37 iinviysLlqardrd....leqreslnetirkleaeierlqskierlk.tqleqlerelalvqakerqlekklktleqklknekeelqrlknal 125 +++ +Ll ++++d ++ +++l++ +r leae+e+l+++ + l+ ++ + l+r+ +++q + +++ + ++ + +++ ee++r k +l T229526_1 98 AMAATQELLLQLQKDnrdgRQRKQELEKLMRGLEAESESLNQRLQDLSeRERSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEDL 191 56667788877777633334567899999******************955667778888899999************************99876 PP >> OmpH Outer membrane protein (OmpH-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 10.6 0.00076 1.1 27 111 .. 95 179 .. 91 193 .. 0.70 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00076 HHHHSHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS OmpH 27 ileespegkaaqkqlekef...kklqaeleakekelqkkqeelqkkakklekeekeqe.lqkkeqelqakqqqkaqqelqkkqqellkp 111 + +++ ++++ ql+k ++++ele++ + l+++ e l++ ++ e+e+ l+++ q+ q +q +a +e +++++e +++ T229526_1 95 VSTAMAATQELLLQLQKDNrdgRQRKQELEKLMRGLEAESESLNQRLQD--LSERERSlLRRRSQAAQP-LQGEA-REAARERAERVRR 179 5667777888888888877777899999999999999999999877766..556666656666666666.77777.6666666664443 PP >> Jnk-SapK_ap_N JNK_SAPK-associated protein-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 15.0 0.0029 4.3 57 146 .. 100 186 .. 90 195 .. 0.72 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0029 Jnk-SapK_ap_N 57 eeleqLetekerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkk 146 +++++L +++++ + + ++ ++ele++ +e e + l++++++l e++r l + +++a + l+ + e +e ++ +r e ++ T229526_1 100 AATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLL-RRRSQAA--QPLQGEAREAARERAERVRRRLEEAER 186 67899************************************************.3333333..344444444444444444444333333 PP >> FUSC Fusaric acid resistance protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.1 0.0036 5.4 228 326 .. 95 189 .. 77 210 .. 0.43 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0036 FUSC 228 mlallallsslarllarlraeeaaevpelaallaelaaleaaaaaealeaelaalrarlaalrpsle.adadtaaallarlaellaelaqllrslraleh 326 + +++a ++l +l+ +++++++ +el++l++ l+a e l ++l+ l +r ++l ++++ a+++ ++++ ++++e+ +++ + l++ +++++ T229526_1 95 VSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAE-----SESLNQRLQDLSERERSLLRRRSqAAQPLQGEAREAARERAERVRRRLEEAERHKE 189 333444444444444444444444444566666666662.....22222222222222222222222122233333333333333333333333333333 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 6.0 0.0071 11 15 64 .. 96 148 .. 92 185 .. 0.69 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0071 Syntaxin-6_N 15 nkleslyrrw.eelledtss..stseeldetrteLrkalrsiewdledLeetv 64 +++ + +++ +l++d+++ ++++el+++++ L+++ +s+++ l+dL e T229526_1 96 STAMAATQELlLQLQKDNRDgrQRKQELEKLMRGLEAESESLNQRLQDLSERE 148 444444444424666676666568*************************9865 PP >> TerB_C TerB-C domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 7.2 0.0054 7.9 24 110 .. 92 173 .. 90 175 .. 0.77 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0054 TerB_C 24 laairketaevselLadifveeereeeeepakpevteepeaeeaeealadkvaesegLdeaeaafLraLlareswpreeveslarek 110 l + + a+++elL ++ +++ + + +++ +++++ eae+++ L+e+e+++Lr+ ++ + ++e++++are+ T229526_1 92 LGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRL-----QDLSERERSLLRRRSQAAQPLQGEAREAARER 173 66778899********9999999754555555555555555555554322.....39***************************997 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 9.6 0.0069 10 27 105 .. 101 177 .. 89 195 .. 0.43 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0069 APG6 27 ayeeflkklekekkseekeeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeeywrern 105 a +e+l +l+k++++ ++ +elek ++ le+e e+l ++l++l + +++l + +++ + l+ +e ++ +er T229526_1 101 ATQELLLQLQKDNRDG--RQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLQGEAREAARERAERV 177 3444444444443332..2344455555555555555555555555555544444444444433332222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1332 (0.0816877); expected 326.1 (0.02) Passed bias filter: 675 (0.0413958); expected 326.1 (0.02) Passed Vit filter: 136 (0.00834049); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 2306.83 // Query: T229526_2 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.57 # Mc/sec: 2505.69 // Query: T229526_3 [L=508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-09 36.8 0.1 8.5e-09 35.4 0.1 1.6 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 4.7 6.9 7.6 6.6 6.4 7.6 1.1 1 ExsD Antiactivator protein ExsD Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.4 0.1 1e-12 8.5e-09 16 54 .. 336 382 .. 332 389 .. 0.88 Alignments for each domain: == domain 1 score: 35.4 bits; conditional E-value: 1e-12 TMEM191C 16 lcdsqlrrvqdcagslmeevaradc........ekrlfggagagalr 54 cd+qlr vq++++slmee+arad+ e+rlfgg++a a+r T229526_3 336 RCDGQLRGVQYSTESLMEEMARADRvsaslspqETRLFGGPRALAIR 382 69**********************6666666669**********998 PP >> ExsD Antiactivator protein ExsD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 7.6 0.00081 6.6 106 182 .. 239 313 .. 234 326 .. 0.82 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00081 ExsD 106 veeLeiqinqleikkefWsklaEkessqireqll.klveslqtklkaqkaelvelesklkeseklvveaWPnfqksls 182 +L+ q + l + + E +s++ eq+l +++ lq +l+ + +e+kl+++ + eaW fq++ T229526_3 239 SRQLQEQWEELSSQLFY---GGEPQSQKSTEQQLaAQLVTLQNELELAETKCALQEEKLQQDALQTAEAWAIFQEQTV 313 56888888888877666...34888888888876257999******9999999********************98755 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 707 (0.0433583); expected 326.1 (0.02) Passed bias filter: 354 (0.0217098); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.65 # Mc/sec: 2235.85 // Query: T183184_1 [L=888] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (888 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1938 (0.118852); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.48s 00:00:02.62 Elapsed: 00:00:00.94 # Mc/sec: 2702.57 // Query: T183184_2 [L=888] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (888 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2274 (0.139458); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.69u 0.50s 00:00:03.19 Elapsed: 00:00:00.98 # Mc/sec: 2592.26 // Query: T183184_3 [L=888] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (888 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2125 (0.13032); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 118 (0.0072366); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.50u 0.61s 00:00:04.11 Elapsed: 00:00:01.09 # Mc/sec: 2330.66 // Query: T052007_1 [L=2769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 11002.28 // Query: T052007_2 [L=2769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.74 # Mc/sec: 10704.92 // Query: T052007_3 [L=2769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 10704.92 // Query: T012477_1 [L=1504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-07 29.5 0.1 7e-07 28.9 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.1 4.3e-11 7e-07 31 90 .. 400 463 .. 388 465 .. 0.85 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 4.3e-11 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012477_1 400 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 463 3577889***********888888899989999999999999*****************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.68 # Mc/sec: 6327.48 // Query: T012477_2 [L=1503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-07 28.4 0.2 1.8e-06 27.3 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.2 1.1e-10 1.8e-06 1 19 [] 1087 1105 .. 1087 1105 .. 0.98 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 1.1e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012477_2 1087 PFAGSWMKLEAIILSKLSQ 1105 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 6231.63 // Query: T012477_3 [L=1503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 28.2 3.0 2.4e-06 27.1 0.0 2.4 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.2 0.014 2.3e+02 8 61 .. 367 429 .. 362 438 .. 0.77 2 ! 27.1 0.0 1.5e-10 2.4e-06 158 222 .] 533 619 .. 508 619 .. 0.82 3 ? -3.7 0.0 0.39 6.4e+03 10 27 .. 1263 1280 .. 1262 1281 .. 0.89 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.014 -EEE......-THHHHCTB-..-.........-------HHHH.................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellka 61 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k+ T012477_3 367 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINKH 429 7799999999988888888555********************999988887555444444444 PP == domain 2 score: 27.1 bits; conditional E-value: 1.5e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012477_3 533 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 619 256666789***************5555***************************99999988877762256678*********986 PP == domain 3 score: -3.7 bits; conditional E-value: 0.39 EE......-THHHHCTB- CS RVT_1 10 Rpisllsvdykalnklia 27 R++ ll++ +++lnkl++ T012477_3 1263 RTLTLLCTSFRILNKLLH 1280 89999**********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 6825.12 // Query: T316782_1 [L=2240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.63 # Mc/sec: 10171.84 // Query: T316782_2 [L=2240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.63 # Mc/sec: 10171.84 // Query: T316782_3 [L=2239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.66 # Mc/sec: 9705.15 // Query: T164570_1 [L=4815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.34s 00:00:01.88 Elapsed: 00:00:00.66 # Mc/sec: 20871.06 // Query: T164570_2 [L=4815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.79 # Mc/sec: 17436.58 // Query: T164570_3 [L=4815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 583 (0.0357537); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.32s 00:00:02.54 Elapsed: 00:00:01.02 # Mc/sec: 13504.80 // Query: T002391_1 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 5969.96 // Query: T002391_2 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4794.06 // Query: T002391_3 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 5022.35 // Query: T121816_1 [L=420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 1969.75 // Query: T121816_2 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 2350.37 // Query: T121816_3 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.59 # Mc/sec: 2031.67 // Query: T090075_1 [L=2539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 869 (0.0532933); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.69 # Mc/sec: 10527.03 // Query: T090075_2 [L=2538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 721 (0.0442169); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.60 # Mc/sec: 12101.31 // Query: T090075_3 [L=2538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 586 (0.0359377); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.71 # Mc/sec: 10226.46 // Query: T029617_1 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 4377.07 // Query: T029617_2 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 5359.68 // Query: T029617_3 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 558 (0.0342205); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.46 # Mc/sec: 5703.00 // Query: T032082_1 [L=1274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 7009.03 // Query: T032082_2 [L=1273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 7003.53 // Query: T032082_3 [L=1273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 7432.32 // Query: T228573_1 [L=2438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.50 # Mc/sec: 13949.41 // Query: T228573_2 [L=2438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.50 # Mc/sec: 13949.41 // Query: T228573_3 [L=2437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.35 10.7 5.9 2.9 8.0 5.9 2.6 1 AT_hook AT hook motif Domain annotation for each model (and alignments): >> AT_hook AT hook motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 5.9 0.00018 2.9 1 10 [. 710 719 .. 710 720 .. 0.95 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00018 AT_hook 1 kRkRGRPrKa 10 kR+RGRPrKa T228573_3 710 KRPRGRPRKA 719 8********7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.49 # Mc/sec: 14228.25 // Query: T001871_1 [L=4061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 478 (0.0293144); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.53 # Mc/sec: 21920.44 // Query: T001871_2 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.52 # Mc/sec: 22336.48 // Query: T001871_3 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 483 (0.029621); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.56 # Mc/sec: 20741.02 // Query: T228581_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.47 # Mc/sec: 11820.71 // Query: T228581_2 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 10893.59 // Query: T228581_3 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 10482.51 // Query: T334194_1 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 502 (0.0307862); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 4668.87 // Query: T334194_2 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 4863.41 // Query: T334194_3 [L=816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 4764.16 // Query: T293917_1 [L=2352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-15 56.0 0.3 5.6e-15 55.5 0.3 1.1 1 DUF1669 Protein of unknown function (DUF1669) 6.8e-10 38.2 4.3 1.2 8.9 0.2 7.8 8 Hexapep Bacterial transferase hexapeptide (six repeats) ------ inclusion threshold ------ 6.8 6.4 8.0 1.2e+02 2.4 0.1 5.7 6 Hexapep_2 Hexapeptide repeat of succinyl-transferase Domain annotation for each model (and alignments): >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.5 0.3 1e-18 5.6e-15 140 198 .. 138 196 .. 133 197 .. 0.94 Alignments for each domain: == domain 1 score: 55.5 bits; conditional E-value: 1e-18 DUF1669 140 viavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlr 198 v avvmd+ft+vdifkdll+a++krk +yi++d +++k+ l+mce+++++ +hlk + T293917_1 138 VPAVVMDMFTHVDIFKDLLDAGFKRKADLYIIVDGSKVKYVLHMCEQTRMHLGHLKAIL 196 679****************************************************9886 PP >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.18 9.6e+02 5 20 .. 529 544 .. 529 545 .. 0.86 2 ? -2.9 0.0 1.1 5.9e+03 22 29 .. 852 859 .. 850 860 .. 0.39 3 ! 6.9 0.0 0.00091 5 11 31 .. 902 922 .. 900 922 .. 0.90 4 ? -3.1 0.0 1.3 7e+03 11 20 .. 957 966 .. 956 970 .. 0.62 5 ? 3.2 0.0 0.013 73 13 30 .. 1022 1039 .. 1021 1042 .. 0.90 6 ! 8.9 0.2 0.00021 1.2 9 31 .. 1099 1121 .. 1097 1121 .. 0.92 7 ! 4.5 0.3 0.0051 28 5 32 .. 1806 1833 .. 1796 1834 .. 0.61 8 ! 6.5 0.1 0.0012 6.6 10 26 .. 1899 1915 .. 1894 1916 .. 0.78 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.18 -TTEEE-TTEEEETTE CS Hexapep 5 GsnvlIgpfaviggnV 20 G vl+ p++++++++ T293917_1 529 GPEVLLAPGVHLRPGC 544 67799999*****999 PP == domain 2 score: -2.9 bits; conditional E-value: 1.1 E-TTEEEE CS Hexapep 22 IGdnvkIg 29 +G +v+Ig T293917_1 852 LGADVYIG 859 33444443 PP == domain 3 score: 6.9 bits; conditional E-value: 0.00091 -TTEEEETTEEE-TTEEEETT CS Hexapep 11 gpfaviggnVkIGdnvkIgag 31 +p +++g++V++G+++++g+g T293917_1 902 WPAVHLGPPVHLGPDTYLGPG 922 6779***************97 PP == domain 4 score: -3.1 bits; conditional E-value: 1.3 -TTEEEETTE CS Hexapep 11 gpfaviggnV 20 gp +++g+++ T293917_1 957 GPRVHLGPGI 966 5666666665 PP == domain 5 score: 3.2 bits; conditional E-value: 0.013 TEEEETTEEE-TTEEEET CS Hexapep 13 faviggnVkIGdnvkIga 30 ++++ + V++G++v +g+ T293917_1 1022 NVHLESSVHLGPDVFLGP 1039 899999999999999998 PP == domain 6 score: 8.9 bits; conditional E-value: 0.00021 EE-TTEEEETTEEE-TTEEEETT CS Hexapep 9 lIgpfaviggnVkIGdnvkIgag 31 ++gp+ ++g V++G++v++gag T293917_1 1099 KLGPYIYLGTAVHVGPGVHVGAG 1121 689******************97 PP == domain 7 score: 4.5 bits; conditional E-value: 0.0051 -TTEEE-TTEEEETTEEE-TTEEEETTE CS Hexapep 5 GsnvlIgpfaviggnVkIGdnvkIgagv 32 Gs+v++g++ + g++V +G++ ++g+g+ T293917_1 1806 GSGVYLGMGIHPGSDVRLGPGIHLGPGC 1833 6666666644444444444444444444 PP == domain 8 score: 6.5 bits; conditional E-value: 0.0012 E-TTEEEETTEEE-TTE CS Hexapep 10 IgpfaviggnVkIGdnv 26 ++p +++g++V++G+nv T293917_1 1899 LRPVVHLGPGVVLGPNV 1915 56778888888888887 PP >> Hexapep_2 Hexapeptide repeat of succinyl-transferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 0.074 4e+02 15 28 .. 714 727 .. 712 727 .. 0.91 2 ? 2.4 0.1 0.022 1.2e+02 8 18 .. 850 860 .. 850 861 .. 0.94 3 ? -2.7 0.0 0.85 4.6e+03 20 32 .. 956 968 .. 956 969 .. 0.87 4 ? -0.9 0.1 0.24 1.3e+03 18 29 .. 1110 1121 .. 1103 1122 .. 0.66 5 ? -0.2 0.4 0.15 8.1e+02 10 30 .. 1805 1827 .. 1803 1833 .. 0.67 6 ? 0.7 0.0 0.074 4e+02 10 30 .. 1893 1915 .. 1890 1916 .. 0.73 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.074 EESEEE-TT-EE-T CS Hexapep_2 15 giGvslGdncvvga 28 giG++lG +c +ga T293917_1 714 GIGIHLGPGCPLGA 727 79********9887 PP == domain 2 score: 2.4 bits; conditional E-value: 0.022 -EE-TT-EESE CS Hexapep_2 8 CliGanagiGv 18 Cl+Ga+ +iG+ T293917_1 850 CLLGADVYIGT 860 **********7 PP == domain 3 score: -2.7 bits; conditional E-value: 0.85 E-TT-EE-TT-EE CS Hexapep_2 20 lGdncvvgaGvvi 32 lG ++++g+G+++ T293917_1 956 LGPRVHLGPGIYL 968 68899******97 PP == domain 4 score: -0.9 bits; conditional E-value: 0.24 EEE-TT-EE-TT CS Hexapep_2 18 vslGdncvvgaG 29 v++G +++vgaG T293917_1 1110 VHVGPGVHVGAG 1121 667777777776 PP == domain 5 score: -0.2 bits; conditional E-value: 0.15 E-TT-E..ESEEE-TT-EE-TT- CS Hexapep_2 10 iGanag..iGvslGdncvvgaGv 30 +G+ + +G++ G ++ +g+G+ T293917_1 1805 LGSGVYlgMGIHPGSDVRLGPGI 1827 56666644577777777777776 PP == domain 6 score: 0.7 bits; conditional E-value: 0.074 E-TT-EE.S.EEE-TT-EE-TT- CS Hexapep_2 10 iGanagi.G.vslGdncvvgaGv 30 +G++ + + v+lG ++v+g++v T293917_1 1893 LGPDGYLrPvVHLGPGVVLGPNV 1915 66666655448999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.50 # Mc/sec: 13457.34 // Query: T293917_2 [L=2352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.50 # Mc/sec: 13457.34 // Query: T293917_3 [L=2352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00037 20.0 0.6 0.037 13.6 0.0 4.4 5 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.0 0.52 8.4e+03 5 14 .. 877 886 .. 877 887 .. 0.47 2 ? -2.5 0.0 0.27 4.4e+03 12 32 .. 1776 1796 .. 1774 1797 .. 0.62 3 ! 13.6 0.0 2.2e-06 0.037 3 36 .] 1928 1980 .. 1926 1980 .. 0.76 4 ? -0.3 0.0 0.056 9.1e+02 8 24 .. 2067 2083 .. 2066 2084 .. 0.73 5 ? -1.1 0.1 0.099 1.6e+03 11 23 .. 2118 2130 .. 2118 2138 .. 0.84 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.52 -TTEEE-TTE CS Hexapep 5 GsnvlIgpfa 14 G++v +gp++ T293917_3 877 GQGVRLGPNS 886 4455555554 PP == domain 2 score: -2.5 bits; conditional E-value: 0.27 TTEEEETTEEE-TTEEEETTE CS Hexapep 12 pfaviggnVkIGdnvkIgagv 32 p +++ V +G++ +g+g+ T293917_3 1776 PDVHLQTRVRLGSDFSLGPGC 1796 566777777777765555554 PP == domain 3 score: 13.6 bits; conditional E-value: 2.2e-06 EE-TTEEE-T...................TEEEETTEEE-TTEEEETTEEEET CS Hexapep 3 vIGsnvlIgp...................faviggnVkIGdnvkIgagvvigg 36 ++G +++ g +++++++V++G++v++++gv +g+ T293917_3 1928 HLGPGCFHGI*ypsvalvsicglmftwhlGTHVRPGVTLGPDVHLEPGVNLGH 1980 5666666666666666666666666777799******************9875 PP == domain 4 score: -0.3 bits; conditional E-value: 0.056 EEE-TTEEEETTEEE-T CS Hexapep 8 vlIgpfaviggnVkIGd 24 v + p +++ + V+IG T293917_3 2067 VNLEPDVHLWSCVHIGT 2083 55678888888888886 PP == domain 5 score: -1.1 bits; conditional E-value: 0.099 -TTEEEETTEEE- CS Hexapep 11 gpfaviggnVkIG 23 +p+a++g+++++G T293917_3 2118 RPGAHLGSHIHVG 2130 699********99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.50 # Mc/sec: 13457.34 // Query: T293088_1 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 5167.75 // Query: T293088_2 [L=849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.47 # Mc/sec: 5167.75 // Query: T293088_3 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 5161.67 // Query: T061895_1 [L=879] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (879 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48 # Mc/sec: 5238.89 // Query: T061895_2 [L=878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 5344.27 // Query: T061895_3 [L=878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5232.93 // Query: T021935_1 [L=603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45 # Mc/sec: 3833.51 // Query: T021935_2 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3444.44 // Query: T021935_3 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 3376.90 // Query: T077419_1 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 7603.21 // Query: T077419_2 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 6082.56 // Query: T077419_3 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.70 # Mc/sec: 5648.10 // Query: T369918_1 [L=3715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 505 (0.0309702); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 15629.39 // Query: T369918_2 [L=3714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.37s 00:00:01.88 Elapsed: 00:00:00.76 # Mc/sec: 13980.42 // Query: T369918_3 [L=3714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 419 (0.0256961); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.35s 00:00:01.88 Elapsed: 00:00:00.72 # Mc/sec: 14757.11 // Query: T356804_1 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.68 # Mc/sec: 5801.59 // Query: T356804_2 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-06 25.3 0.7 1.5e-05 24.3 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.7 9.4e-10 1.5e-05 1 19 [] 69 87 .. 69 87 .. 0.97 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 9.4e-10 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F g+WM+LE+II S+ +Q T356804_2 69 SFTGTWMKLETIIVSKLTQ 87 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 7039.69 // Query: T356804_3 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-10 39.6 0.1 8.9e-10 39.0 0.1 1.2 1 EloA-BP1 ElonginA binding-protein 1 Domain annotation for each model (and alignments): >> EloA-BP1 ElonginA binding-protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.0 0.1 5.5e-14 8.9e-10 125 161 .. 537 573 .. 532 577 .. 0.91 Alignments for each domain: == domain 1 score: 39.0 bits; conditional E-value: 5.5e-14 EloA-BP1 125 gaalYekLkeylLteeqLkenGyPrphpekpGkavll 161 g lY++Lk+ylLteeqL++n+yPrp p+kpG+++l T356804_3 537 GVILYRHLKNYLLTEEQLHKNNYPRPYPNKPGSILLN 573 678******************************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 6064.96 // Query: T344415_1 [L=4212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-32 110.6 0.3 1.2e-31 109.8 0.3 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.8 0.3 7.6e-36 1.2e-31 65 222 .] 3182 3365 .. 3156 3365 .. 0.93 Alignments for each domain: == domain 1 score: 109.8 bits; conditional E-value: 7.6e-36 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T....... CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.... 158 k+++++++D +k F+++++++ l++l++++v+ + +++i++++ + ++++ +n ++ e ++ k+g++qG++lSPllfn++++ l r +r++ T344415_1 3182 DDKNHMIISIDAEKSFNKIQHPFMLKTLNKLGVDGMYLKIIRAIYDKSTTNIILNRQKLEALPLKTGIRQGCPLSPLLFNMVLEVLARAIRQEKeikg 3279 46899****************************************************99*********************************99**** PP ........TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 .....kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin K +++l+ ++ ++++kyLG++l T344415_1 3280 iqigkEEVKLSLFADDMIVYLENsIVSAQNLLKLISNFSKVSGYKINVLKLQAFLYtnnrqteieittKFpfiiATKRIKYLGIPL 3365 ***********************7888***************************99999988887765226789*********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.64 # Mc/sec: 18827.84 // Query: T344415_2 [L=4211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-34 118.6 13.4 2.3e-33 115.5 4.7 2.4 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 1.4 7.7e-05 1.3 30 83 .. 2293 2358 .. 2282 2371 .. 0.74 2 ! 115.5 4.7 1.4e-37 2.3e-33 202 295 .. 2401 2496 .. 2380 2504 .. 0.93 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 7.7e-05 XXXX..XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.XXXXXXX..........XXXX CS Transposase_22 30 sPatteeldpdlkdflelriedikkdfyke...lkelieskakele.alkekee..........ntek 83 Pa e+++++++f+el + +++ + lke + +++ke + k ee nt+ T344415_2 2293 TPAR--EQNWMENEFNELTEVSFRRWVITNss*LKEHVLTQCKEAKnLDKRSEElltritslekNTND 2358 4555..9******************887655799**********985556555544444433333333 PP == domain 2 score: 115.5 bits; conditional E-value: 1.4e-37 T--HHHHHHHHHHHHHHH-HHHHHHT---EE..EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH CS Transposase_22 202 deqlkklenilnkiieenfPnlkkeanviiq..eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl 292 +e+++klen+l++ii+enfPnl+++an++iq ei+ P+ ++ +ra++rhii+r+tkv+ k+k l +rek +vt kGkPirltadl + T344415_2 2401 VENGTKLENTLQEIIQENFPNLARQANIQIQihEIQGIPQTHSLRRATPRHIIIRFTKVEVKEKRLSVAREKSQVTHKGKPIRLTADLCRNPA 2493 689************************988766*******************************************************87655 PP HHH CS Transposase_22 293 kar 295 + T344415_2 2494 SQK 2496 554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.53u 0.31s 00:00:01.84 Elapsed: 00:00:00.80 # Mc/sec: 15058.69 // Query: T344415_3 [L=4211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-33 113.8 0.3 1.3e-32 113.0 0.3 1.4 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.0 0.3 7.7e-37 1.3e-32 287 367 .. 2487 2569 .. 2485 2570 .. 0.98 Alignments for each domain: == domain 1 score: 113.0 bits; conditional E-value: 7.7e-37 --HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 287 lsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +saetl+arrew ++++ilke+kfqPr++yPak+s+i+dGeik f dk++lrd ++ rP l+++l+e ++e ++ yq+l+++ T344415_3 2487 ISAETLQARREWRPIFNILKENKFQPRISYPAKVSFISDGEIKSFTDKQMLRDVVTNRPDLQEFLEEalNMENNNLYQPLQKH 2569 8********************************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 573 (0.0351404); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.60u 0.41s 00:00:02.01 Elapsed: 00:00:00.82 # Mc/sec: 14691.41 // Query: T174468_1 [L=4589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.34s 00:00:01.78 Elapsed: 00:00:00.67 # Mc/sec: 19594.55 // Query: T174468_2 [L=4588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.95 # Mc/sec: 13816.30 // Query: T174468_3 [L=4588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.65 # Mc/sec: 20193.06 // Query: T258971_1 [L=2953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.68 # Mc/sec: 12423.57 // Query: T258971_2 [L=2953] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.7 6.6 6.6 11 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00065 11 6 41 .. 2012 2047 .. 1998 2058 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00065 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258971_2 2012 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2047 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2953 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 11572.65 // Query: T258971_3 [L=2952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.77 # Mc/sec: 10967.75 // Query: T211902_1 [L=2851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 75 (0.00459953); expected 326.1 (0.02) Passed bias filter: 38 (0.00233043); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.65 # Mc/sec: 12548.04 // Query: T211902_2 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.28s 00:00:01.35 Elapsed: 00:00:00.73 # Mc/sec: 11168.99 // Query: T211902_3 [L=2850] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2850 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 13819.26 // Query: T369287_1 [L=456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 2288.66 // Query: T369287_2 [L=456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.61 # Mc/sec: 2138.59 // Query: T369287_3 [L=455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 2133.90 // Query: T227554_1 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 4425.35 // Query: T227554_2 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.63 # Mc/sec: 4495.59 // Query: T227554_3 [L=990] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (990 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 4968.81 // Query: T018818_1 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-29 103.5 16.4 1.1e-29 103.5 16.4 3.0 3 CCDC144C CCDC144C protein coiled-coil region 2.6e-16 59.8 6.5 2.6e-16 59.8 6.5 3.1 3 DUF3496 Domain of unknown function (DUF3496) Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 6.0 0.49 4e+03 186 237 .. 152 203 .. 143 260 .. 0.61 2 ! 103.5 16.4 1.3e-33 1.1e-29 1 96 [. 703 798 .. 703 799 .. 0.99 3 ? -0.5 1.1 0.058 4.7e+02 74 108 .. 1167 1201 .. 1153 1216 .. 0.71 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.49 CCDC144C 186 rdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 r q+ + l ++++e+e+ +++ +kq ++e +se + L + + T018818_1 152 RKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 203 5555555555555555555555555555555555555555555555554443 PP == domain 2 score: 103.5 bits; conditional E-value: 1.3e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018818_1 703 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 798 9*********************************************************************************************95 PP == domain 3 score: -0.5 bits; conditional E-value: 0.058 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018818_1 1167 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 1201 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 2.2 0.48 3.9e+03 34 74 .. 151 191 .. 147 204 .. 0.87 2 ? -4.6 5.9 2 1.6e+04 30 87 .. 725 781 .. 708 796 .. 0.57 3 ! 59.8 6.5 3.1e-20 2.6e-16 3 69 .. 1160 1225 .. 1159 1227 .. 0.93 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.48 DUF3496 34 kqlyleelkvrksLsnklnktnerLaevstkllvekeqnrs 74 ++ y++ l++++ L l++++er + + k ke n++ T018818_1 151 QRKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNT 191 578999*******************9999999999987765 PP == domain 2 score: -4.6 bits; conditional E-value: 2 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018818_1 725 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 781 555.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 59.8 bits; conditional E-value: 3.1e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018818_1 1160 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 1225 78*********************.***********************************97766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1059 (0.0649454); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 6252.36 // Query: T018818_2 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-30 104.7 13.6 4.5e-30 104.7 13.6 3.3 3 CCDC144C CCDC144C protein coiled-coil region 0.0044 16.9 1.1 0.0044 16.9 1.1 2.8 3 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 1.2 6.1e-06 0.05 96 143 .. 797 842 .. 784 843 .. 0.87 2 ! 104.7 13.6 5.5e-34 4.5e-30 184 304 .. 881 992 .. 870 993 .. 0.94 3 ? -5.2 20.4 1.6 1.3e+04 120 231 .. 1039 1154 .. 1010 1157 .. 0.78 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.1e-06 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018818_2 797 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 842 689**********************9554.57..89*********9976 PP == domain 2 score: 104.7 bits; conditional E-value: 5.5e-34 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018818_2 881 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 971 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018818_2 972 MNECD-H*KESLFRYEREKAER 992 ****7.55589**********8 PP == domain 3 score: -5.2 bits; conditional E-value: 1.6 CCDC144C 120 afqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yi 213 + + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++ T018818_2 1039 QVESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHL 1136 34455577888899999999999999999999984445889999999999999988877777788999999999999999997766666666655267 PP CCDC144C 214 gkqesleerlsqlqsenl 231 ++q ++ +l ql+++ + T018818_2 1137 QEQAQYKKQLEQLNKDII 1154 788899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 1.1 5.4e-07 0.0044 24 94 .. 883 952 .. 879 953 .. 0.95 2 ? -3.3 0.1 0.93 7.5e+03 61 80 .. 996 1015 .. 991 1022 .. 0.74 3 ? 0.2 11.0 0.079 6.5e+02 9 96 .. 1065 1150 .. 1034 1156 .. 0.82 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 5.4e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018818_2 883 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 952 68999********************************************************76.9999986 PP == domain 2 score: -3.3 bits; conditional E-value: 0.93 XXXXXXXXXXXXXXXXXXXX CS Laminin_II 61 vkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018818_2 996 VRQLQQEAADSLKKLTMLES 1015 78888888888888777765 PP == domain 3 score: 0.2 bits; conditional E-value: 0.079 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018818_2 1065 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 1150 45555556677889999999999999999999999999999999999999999999999999999999999998884..466666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1360 (0.0834049); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.70 # Mc/sec: 6163.05 // Query: T018818_3 [L=1507] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1507 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 6736.36 // Query: T294608_1 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.65 # Mc/sec: 7724.24 // Query: T294608_2 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.60 # Mc/sec: 8367.93 // Query: T294608_3 [L=1755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 9128.65 // Query: T194267_1 [L=4815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.64 # Mc/sec: 21523.28 // Query: T194267_2 [L=4814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.34s 00:00:02.06 Elapsed: 00:00:00.94 # Mc/sec: 14651.10 // Query: T194267_3 [L=4814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.32s 00:00:01.88 Elapsed: 00:00:00.67 # Mc/sec: 20555.28 // Query: T316474_1 [L=3601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.64 # Mc/sec: 16096.64 // Query: T316474_2 [L=3601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.29s 00:00:01.48 Elapsed: 00:00:00.56 # Mc/sec: 18396.16 // Query: T316474_3 [L=3600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.77 # Mc/sec: 13375.31 // Query: T188439_1 [L=5706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.40s 00:00:02.46 Elapsed: 00:00:00.93 # Mc/sec: 17552.58 // Query: T188439_2 [L=5706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.8 7.9 4.6 5.1 7.0 4.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 4.6 0.00031 5.1 65 103 .. 2505 2543 .. 2486 2564 .. 0.69 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00031 Peptidase_S49_N 65 eelkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 e++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188439_2 2505 ERQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2543 445555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 811 (0.0497363); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.60u 0.45s 00:00:03.05 Elapsed: 00:00:00.89 # Mc/sec: 18341.46 // Query: T188439_3 [L=5705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 798 (0.048939); expected 326.1 (0.02) Passed bias filter: 239 (0.0146572); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.35u 0.41s 00:00:02.76 Elapsed: 00:00:00.97 # Mc/sec: 16825.81 // Query: T308163_1 [L=1812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.25s 00:00:01.14 Elapsed: 00:00:00.78 # Mc/sec: 6645.93 // Query: T308163_2 [L=1811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 7970.71 // Query: T308163_3 [L=1811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.64 # Mc/sec: 8095.25 // Query: T337156_1 [L=5501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.38s 00:00:02.04 Elapsed: 00:00:00.82 # Mc/sec: 19191.98 // Query: T337156_2 [L=5500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.29s 00:00:01.97 Elapsed: 00:00:00.83 # Mc/sec: 18957.31 // Query: T337156_3 [L=5500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 518 (0.0317674); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.05u 0.45s 00:00:03.50 Elapsed: 00:00:01.09 # Mc/sec: 14435.38 // Query: T368416_1 [L=2283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.73 # Mc/sec: 8946.95 // Query: T368416_2 [L=2283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 10885.46 // Query: T368416_3 [L=2282] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2282 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12089.66 // Query: T338275_1 [L=1351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7578.39 // Query: T338275_2 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 7152.07 // Query: T338275_3 [L=1350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 7572.79 // Query: T201256_1 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 11646.88 // Query: T201256_2 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 11427.13 // Query: T201256_3 [L=2117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 11875.25 // Query: T325355_1 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12264.48 // Query: T325355_2 [L=2315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-19 69.6 0.8 5.7e-13 48.7 0.1 2.3 2 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.1 3.8e-08 0.00062 31 67 .. 468 504 .. 467 507 .. 0.87 2 ! 48.7 0.1 3.5e-17 5.7e-13 122 210 .. 559 647 .. 556 648 .. 0.98 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 3.8e-08 Gag_p30 31 iesillthqptwddcqqllqtlltteerqrvlleark 67 + +i+ th ptw d q ll+++lt++er+ vl + k T325355_2 468 VTTIFATHCPTWADVQALLNIMLTADERRLVLDKGEK 504 567999**********************998866555 PP == domain 2 score: 48.7 bits; conditional E-value: 3.5e-17 Gag_p30 122 rptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 rp l kv+e+ q ++e p+ f+e++ + yr+yt dp+dp++ v +++ qsa+ +k + +eg +++ ++l+ a +vyn re T325355_2 559 RPKSLNKVQELQQKPNEDPSEFMEQICQMYRKYTDLDPQDPKNVRMVNMTLTRQSAPRHQKEVPNVEGAMGMNASQLIDIAFNVYNSRE 647 899***********************************************************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12041.49 // Query: T325355_3 [L=2314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-15 56.4 0.1 7.9e-15 54.8 0.0 1.6 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.006 16.0 0.2 0.0099 15.3 0.2 1.3 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.28 2.3e+03 126 141 .. 908 923 .. 901 924 .. 0.85 2 ! 54.8 0.0 9.7e-19 7.9e-15 59 186 .. 1184 1288 .. 1160 1306 .. 0.86 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.28 EEEESB--ST-TTHHH CS RVT_1 126 ryekkglpqGsvlSPl 141 +++ + l+qG++lSP T325355_3 908 LFSFCFLRQGLALSPR 923 577899*********5 PP == domain 2 score: 54.8 bits; conditional E-value: 9.7e-19 ...HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T. CS RVT_1 59 lkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrk 156 + + + ++++ lDlk+aF+ +p +++++ l++++ p++ +++++y++++lpqG+++SP++f ++ + lr+l+ T325355_3 1184 TIFIFLSRDHEWFRVLDLKDAFFCIPANAESQLLFEWTDPET---------------------ATQFQYCWTVLPQGFKNSPTVFGEALAQNLRDLQL 1260 5556677889******************************43.....................56********************************* PP .....TEEECTTEEEEEESSHHHHHHHHHH CS RVT_1 157 rakgvtllrYaDDililskskeelqellea 186 + + +llrYaDD+li+s+ k+e+q + T325355_3 1261 E--NGVLLRYADDLLISSSLKQECQDNTVK 1288 6..89**************99998876555 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.2 1.2e-06 0.0099 4 29 .. 441 466 .. 440 472 .. 0.93 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.2e-06 Gag_p30 4 pfsasdlynwktnnpsfsedpqklta 29 pf +sdl nwk+ ps+ e+pqk+t+ T325355_3 441 PFPTSDLLNWKSSSPSYREEPQKMTE 466 9***********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 11821.36 // Query: T277874_1 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 618 (0.0379002); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.51 # Mc/sec: 10573.85 // Query: T277874_2 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 617 (0.0378388); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10174.84 // Query: T277874_3 [L=1884] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1884 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 649 (0.0398013); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.51 # Mc/sec: 10568.24 // Query: T202687_1 [L=2506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-10 39.5 0.3 8.2e-10 38.7 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.3 5e-14 8.2e-10 33 96 .. 2036 2100 .. 2031 2106 .. 0.95 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 5e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202687_1 2036 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 2100 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 13276.37 // Query: T202687_2 [L=2506] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-37 127.2 0.2 7.2e-37 126.6 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.6 0.2 4.4e-41 7.2e-37 1 168 [. 1637 1801 .. 1637 1802 .. 0.87 Alignments for each domain: == domain 1 score: 126.6 bits; conditional E-value: 4.4e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202687_2 1637 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1730 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202687_2 1731 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1801 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2506 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 13276.37 // Query: T202687_3 [L=2505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.54 # Mc/sec: 13271.07 // Query: T272762_1 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44 # Mc/sec: 3985.66 // Query: T272762_2 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.001 18.6 1.2 0.0049 16.4 0.1 2.5 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.1 0.078 1.3e+03 11 21 .] 190 200 .. 189 200 .. 0.87 2 ! 16.4 0.1 3e-07 0.0049 4 20 .. 302 318 .. 302 319 .. 0.91 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.078 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272762_2 190 WRGFVLTRSFR 200 9***9988886 PP == domain 2 score: 16.4 bits; conditional E-value: 3e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272762_2 302 VTVMQAHVRGWLERKRL 318 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 498 (0.0305409); expected 326.1 (0.02) Passed bias filter: 362 (0.0222004); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 3507.38 // Query: T272762_3 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.46 # Mc/sec: 3806.15 // Query: T137570_1 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45 # Mc/sec: 5441.93 // Query: T137570_2 [L=855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 5095.85 // Query: T137570_3 [L=855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 5204.28 // Query: T043244_1 [L=3683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.53 # Mc/sec: 19880.07 // Query: T043244_2 [L=3683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.53 # Mc/sec: 19880.07 // Query: T043244_3 [L=3682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.53 # Mc/sec: 19874.67 // Query: T004119_1 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 7408.97 // Query: T004119_2 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1630 (0.0999632); expected 326.1 (0.02) Passed bias filter: 406 (0.0248988); expected 326.1 (0.02) Passed Vit filter: 86 (0.00527413); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 6482.85 // Query: T004119_3 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 418 (0.0256347); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 6976.02 // Query: T182467_1 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12248.59 // Query: T182467_2 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12248.59 // Query: T182467_3 [L=2311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.048 13.2 0.5 0.093 12.3 0.5 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.5 5.7e-06 0.093 6 15 .. 788 797 .. 785 797 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.7e-06 DUF1725 6 WMELEnIILS 15 WM LEnI+LS T182467_3 788 WMNLENIMLS 797 *********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.53 # Mc/sec: 12474.30 // Query: T155503_1 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.48 # Mc/sec: 8034.16 // Query: T155503_2 [L=1347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8028.20 // Query: T155503_3 [L=1347] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1347 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 6116.73 // Query: T323230_1 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0072 16.4 38.0 0.0096 16.0 15.3 5.6 5 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.0 0.58 9.5e+03 27 45 .. 244 259 .. 242 260 .. 0.71 2 ! 10.2 3.8 3.9e-05 0.63 25 50 .] 326 351 .. 323 351 .. 0.87 3 ! 16.0 15.3 5.9e-07 0.0096 2 46 .. 377 424 .. 376 428 .. 0.94 4 ? -1.3 0.2 0.14 2.3e+03 11 30 .. 429 448 .. 424 454 .. 0.78 5 ? 0.7 0.2 0.035 5.8e+02 22 48 .. 550 574 .. 546 581 .. 0.56 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 0.58 DUF4705 27 aqLpvAsaGpklppagLsr 45 ++++ A +G++l+ L r T323230_1 244 LGPGDAIGGQELS---LAR 259 5677789999997...444 PP == domain 2 score: 10.2 bits; conditional E-value: 3.9e-05 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 +sa +AsaGp pp+ +srP+ CL T323230_1 326 ASASRMAASAGPAVPPGCISRPTPCL 351 5666679******************8 PP == domain 3 score: 16.0 bits; conditional E-value: 5.9e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl....ppagLsrP 46 gp Pas++p q +++ q + rp +Lp As+Gp l pp+++s P T323230_1 377 GPHPASQWPVQ-SQLWQEKSVCRPHCCLPGASPGPALapprPPGAMSLP 424 899********.*************************999999999888 PP == domain 4 score: -1.3 bits; conditional E-value: 0.14 DUF4705 11 LqapaslqasglsrpsaqLp 30 L+a+ +l++ gl r ++ L+ T323230_1 429 LRAALLLPHGGLLRQGLTLT 448 66788899999999888887 PP == domain 5 score: 0.7 bits; conditional E-value: 0.035 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPss 48 r+s q+ A Gp++ ++ +rP+s T323230_1 550 EARGSRQPLSAWEGPVR--GKGLRPTS 574 55666677777777766..23333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 3388.98 // Query: T323230_2 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 3552.97 // Query: T323230_3 [L=770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-06 26.7 22.5 0.00016 21.7 6.4 7.4 9 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.3 0.36 5.8e+03 35 48 .. 201 214 .. 187 215 .. 0.83 2 ? -1.8 0.3 0.21 3.4e+03 20 47 .. 247 274 .. 246 277 .. 0.82 3 ? 1.6 1.4 0.018 2.9e+02 34 48 .. 324 338 .. 314 340 .. 0.63 4 ! 21.7 6.4 9.9e-09 0.00016 26 50 .] 357 381 .. 336 381 .. 0.81 5 ! 19.7 8.2 4e-08 0.00065 3 38 .. 388 422 .. 386 430 .. 0.90 6 ? 0.5 2.8 0.04 6.6e+02 2 14 .. 431 446 .. 430 464 .. 0.74 7 ? -1.3 0.1 0.15 2.4e+03 24 38 .. 584 598 .. 574 613 .. 0.61 8 ? -3.6 0.0 0.77 1.3e+04 39 46 .. 699 706 .. 684 707 .. 0.71 9 ? -3.3 0.1 0.6 9.8e+03 8 22 .. 725 739 .. 724 741 .. 0.54 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.36 DUF4705 35 GpklppagLsrPss 48 Gp +p + srP+s T323230_3 201 GPGRPTCSSSRPTS 214 78888888888887 PP == domain 2 score: -1.8 bits; conditional E-value: 0.21 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs 47 ++ r++a ++ A++ p l ++L + s T323230_3 247 RCHRRAGAEPGEATVRPDLGLGSLASGS 274 577899999999**99999888887764 PP == domain 3 score: 1.6 bits; conditional E-value: 0.018 DUF4705 34 aGpklppagLsrPss 48 +G lp +gL rPs+ T323230_3 324 PGLCLPHGGLCRPSC 338 345556677777755 PP == domain 4 score: 21.7 bits; conditional E-value: 9.9e-09 DUF4705 26 saqLpvAsaGpklppagLsrPssCL 50 aqLp+A+++p+ + a+L+rP+sCL T323230_3 357 LAQLPPAFVDPEVSAAKLFRPTSCL 381 48**********************9 PP == domain 5 score: 19.7 bits; conditional E-value: 4e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 pA a++ +Lq +++l+++g rps+++++A +G ++ T323230_3 388 PALAGEERLQ-APLLPPRGVPRPSSRPTAAARGHVP 422 9*********.*********************9776 PP == domain 6 score: 0.5 bits; conditional E-value: 0.04 DUF4705 2 gpAPasrrpLqa...p 14 gpAP sr+p a + T323230_3 431 GPAPPSRWPVEAgahA 446 9********9875542 PP == domain 7 score: -1.3 bits; conditional E-value: 0.15 DUF4705 24 rpsaqLpvAsaGpkl 38 r+s ++ A +Gp++ T323230_3 584 RGSRRPLSAWQGPVR 598 555556666666654 PP == domain 8 score: -3.6 bits; conditional E-value: 0.77 DUF4705 39 ppagLsrP 46 p++gL rP T323230_3 699 PELGLYRP 706 67777777 PP == domain 9 score: -3.3 bits; conditional E-value: 0.6 DUF4705 8 rrpLqapaslqasgl 22 +r+L a + l++ +l T323230_3 725 QRRLGAGQELSQKSL 739 566665555555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4236.23 // Query: T082056_1 [L=6246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-26 90.8 0.8 1e-25 90.2 0.8 1.2 1 Transposase_22 L1 transposable element 9.7e-05 21.8 0.4 0.00021 20.7 0.4 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.2 0.8 1.3e-29 1e-25 214 309 .. 3552 3645 .. 3552 3654 .. 0.93 Alignments for each domain: == domain 1 score: 90.2 bits; conditional E-value: 1.3e-29 HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilk 306 +i+ enfPnl++e+nv+i e++rtPn + kr+++rhii++++k++ kd + e +vt G +r + ++saetl+ rew d++++lk T082056_1 3552 EIVAENFPNLEREMNVQIHEARRTPNILNIKRSTPRHIIIKFSKAKDKDYFE--SSEERHVTCNGTHMRWSVNFSAETLQILREWNDIFKVLK 3642 599******************************************9999764..567889********************************* PP HTT CS Transposase_22 307 ekk 309 ekk T082056_1 3643 EKK 3645 *98 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.4 2.6e-08 0.00021 4 19 .] 1487 1502 .. 1485 1502 .. 0.93 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 2.6e-08 DUF1725 4 gKWMELEnIILSEisQ 19 ++WME E+IILSE++Q T082056_1 1487 ATWMESETIILSEVTQ 1502 8**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.90u 0.39s 00:00:02.29 Elapsed: 00:00:00.79 # Mc/sec: 22618.66 // Query: T082056_2 [L=6246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6246 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.38s 00:00:02.21 Elapsed: 00:00:00.71 # Mc/sec: 25167.25 // Query: T082056_3 [L=6245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0003 20.2 1.0 0.0007 19.1 1.0 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 1.0 4.3e-08 0.0007 1 19 [] 5588 5606 .. 5588 5606 .. 0.95 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 4.3e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F ++WM LE+I+LSE sQ T082056_3 5588 SFGTTWMSLEDILLSEMSQ 5606 6889**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6245 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.71u 0.37s 00:00:02.08 Elapsed: 00:00:00.78 # Mc/sec: 22904.98 // Query: T014635_1 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2049 (0.125659); expected 326.1 (0.02) Passed bias filter: 347 (0.0212805); expected 326.1 (0.02) Passed Vit filter: 164 (0.0100576); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 3231.53 // Query: T014635_2 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-06 26.2 0.0 7.3e-06 25.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymer Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 4.5e-10 7.3e-06 125 179 .. 694 757 .. 685 795 .. 0.88 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 4.5e-10 EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee 179 ++ k g +qG+ SPllfn+++ l+ +r++ ++++l++++ D++++ ++ ++ T014635_2 694 AFPLKSGARQGCSFSPLLFNIVLKVLDSVIRQENkikgihigkEEIKLALFVHDVIVYRENLKK 757 68999***************************99************************999665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1530 (0.0938305); expected 326.1 (0.02) Passed bias filter: 404 (0.0247762); expected 326.1 (0.02) Passed Vit filter: 138 (0.00846314); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 3321.05 // Query: T014635_3 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1250 (0.0766589); expected 326.1 (0.02) Passed bias filter: 280 (0.0171716); expected 326.1 (0.02) Passed Vit filter: 94 (0.00576475); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.64 # Mc/sec: 3580.51 // Query: T320415_1 [L=490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2459.31 // Query: T320415_2 [L=490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 2260.98 // Query: T320415_3 [L=489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.67 # Mc/sec: 2087.98 // Query: T231247_1 [L=3329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.85 # Mc/sec: 11204.36 // Query: T231247_2 [L=3329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.30s 00:00:01.57 Elapsed: 00:00:00.70 # Mc/sec: 13605.29 // Query: T231247_3 [L=3329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.29s 00:00:01.61 Elapsed: 00:00:00.68 # Mc/sec: 14005.45 // Query: T070941_1 [L=1182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 5367.46 // Query: T070941_2 [L=1182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 5047.02 // Query: T070941_3 [L=1182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 5731.36 // Query: T235626_1 [L=4043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.73 # Mc/sec: 15844.30 // Query: T235626_2 [L=4043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.28s 00:00:01.67 Elapsed: 00:00:00.88 # Mc/sec: 13143.56 // Query: T235626_3 [L=4043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.28s 00:00:01.67 Elapsed: 00:00:00.65 # Mc/sec: 17794.36 // Query: T194214_1 [L=1216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.56 # Mc/sec: 6212.09 // Query: T194214_2 [L=1216] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1216 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.74 # Mc/sec: 4701.04 // Query: T194214_3 [L=1215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 5431.11 // Query: T062743_1 [L=1195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.78 # Mc/sec: 4382.94 // Query: T062743_2 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 9.1 2.4 2 8.3 2.4 1.4 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 2.4 0.00012 2 23 39 .. 977 993 .. 968 1001 .. 0.61 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00012 DUF3915 23 drerererederekere 39 +rer+rere+ere+er+ T062743_2 977 ERERKRERERERERERD 993 45555555555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 5889.36 // Query: T062743_3 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.042 13.7 2.1 0.07 13.0 2.1 1.2 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 2.1 4.3e-06 0.07 24 46 .. 977 997 .. 971 1006 .. 0.61 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 4.3e-06 DUF3915 24 rerererederekerekkkerha 46 rererere+ere+ere++ h+ T062743_3 977 REREREREREREREREMES--HS 997 5566555555555555554..33 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.47 # Mc/sec: 7267.73 // Query: T293914_1 [L=2708] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00052 19.5 0.2 0.043 13.4 0.0 4.2 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 0.31 5.1e+03 12 32 .. 2132 2152 .. 2130 2153 .. 0.62 2 ! 13.4 0.0 2.6e-06 0.043 3 36 .] 2284 2336 .. 2282 2336 .. 0.76 3 ? -0.5 0.0 0.065 1.1e+03 8 24 .. 2423 2439 .. 2422 2440 .. 0.73 4 ? -1.3 0.1 0.12 1.9e+03 11 23 .. 2474 2486 .. 2474 2494 .. 0.84 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.31 TTEEEETTEEE-TTEEEETTE CS Hexapep 12 pfaviggnVkIGdnvkIgagv 32 p +++ V +G++ +g+g+ T293914_1 2132 PDVHLQTRVRLGSDFSLGPGC 2152 566777777777765555554 PP == domain 2 score: 13.4 bits; conditional E-value: 2.6e-06 EE-TTEEE-T...................TEEEETTEEE-TTEEEETTEEEET CS Hexapep 3 vIGsnvlIgp...................faviggnVkIGdnvkIgagvvigg 36 ++G +++ g +++++++V++G++v++++gv +g+ T293914_1 2284 HLGPGCFHGI*ypsvalvsicglmftwhlGTHVRPGVTLGPDVHLEPGVNLGH 2336 5666666666666666666666666777799******************9875 PP == domain 3 score: -0.5 bits; conditional E-value: 0.065 EEE-TTEEEETTEEE-T CS Hexapep 8 vlIgpfaviggnVkIGd 24 v + p +++ + V+IG T293914_1 2423 VNLEPDVHLWSCVHIGT 2439 55678888888888886 PP == domain 4 score: -1.3 bits; conditional E-value: 0.12 -TTEEEETTEEE- CS Hexapep 11 gpfaviggnVkIG 23 +p+a++g+++++G T293914_1 2474 RPGAHLGSHIHVG 2486 699********99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2708 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.34s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 10759.90 // Query: T293914_2 [L=2707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-15 55.8 0.3 6.5e-15 55.3 0.3 1.2 1 DUF1669 Protein of unknown function (DUF1669) 1.7e-09 36.9 4.0 1.4 8.7 0.2 7.6 8 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.3 0.3 8e-19 6.5e-15 140 198 .. 493 551 .. 488 552 .. 0.94 Alignments for each domain: == domain 1 score: 55.3 bits; conditional E-value: 8e-19 DUF1669 140 viavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlr 198 v avvmd+ft+vdifkdll+a++krk +yi++d +++k+ l+mce+++++ +hlk + T293914_2 493 VPAVVMDMFTHVDIFKDLLDAGFKRKADLYIIVDGSKVKYVLHMCEQTRMHLGHLKAIL 551 679****************************************************9886 PP >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.14 1.1e+03 5 20 .. 884 899 .. 884 900 .. 0.86 2 ? -3.1 0.0 0.84 6.9e+03 22 29 .. 1207 1214 .. 1205 1215 .. 0.39 3 ! 6.7 0.0 0.00071 5.8 11 31 .. 1257 1277 .. 1255 1277 .. 0.90 4 ? -3.5 0.0 1.1 9.2e+03 11 20 .. 1312 1321 .. 1311 1324 .. 0.66 5 ? 3.0 0.0 0.01 85 13 30 .. 1377 1394 .. 1376 1397 .. 0.90 6 ! 8.7 0.2 0.00017 1.4 9 31 .. 1454 1476 .. 1452 1476 .. 0.92 7 ! 4.4 0.2 0.0038 31 5 32 .. 2161 2188 .. 2152 2189 .. 0.60 8 ! 6.3 0.1 0.00095 7.7 10 26 .. 2254 2270 .. 2249 2271 .. 0.78 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.14 -TTEEE-TTEEEETTE CS Hexapep 5 GsnvlIgpfaviggnV 20 G vl+ p++++++++ T293914_2 884 GPEVLLAPGVHLRPGC 899 67799999*****999 PP == domain 2 score: -3.1 bits; conditional E-value: 0.84 E-TTEEEE CS Hexapep 22 IGdnvkIg 29 +G +v+Ig T293914_2 1207 LGADVYIG 1214 33444443 PP == domain 3 score: 6.7 bits; conditional E-value: 0.00071 -TTEEEETTEEE-TTEEEETT CS Hexapep 11 gpfaviggnVkIGdnvkIgag 31 +p +++g++V++G+++++g+g T293914_2 1257 WPAVHLGPPVHLGPDTYLGPG 1277 6779***************97 PP == domain 4 score: -3.5 bits; conditional E-value: 1.1 -TTEEEETTE CS Hexapep 11 gpfaviggnV 20 gp +++g+++ T293914_2 1312 GPRVHLGPGI 1321 6677777765 PP == domain 5 score: 3.0 bits; conditional E-value: 0.01 TEEEETTEEE-TTEEEET CS Hexapep 13 faviggnVkIGdnvkIga 30 ++++ + V++G++v +g+ T293914_2 1377 NVHLESSVHLGPDVFLGP 1394 899999999999999998 PP == domain 6 score: 8.7 bits; conditional E-value: 0.00017 EE-TTEEEETTEEE-TTEEEETT CS Hexapep 9 lIgpfaviggnVkIGdnvkIgag 31 ++gp+ ++g V++G++v++gag T293914_2 1454 KLGPYIYLGTAVHVGPGVHVGAG 1476 689******************97 PP == domain 7 score: 4.4 bits; conditional E-value: 0.0038 -TTEEE-TTEEEETTEEE-TTEEEETTE CS Hexapep 5 GsnvlIgpfaviggnVkIGdnvkIgagv 32 Gs+v++g++ + g++V +G++ ++g+g+ T293914_2 2161 GSGVYLGMGIHPGSDVRLGPGIHLGPGC 2188 6666666644444444444444444444 PP == domain 8 score: 6.3 bits; conditional E-value: 0.00095 E-TTEEEETTEEE-TTE CS Hexapep 10 IgpfaviggnVkIGdnv 26 ++p +++g++V++G+nv T293914_2 2254 LRPVVHLGPGVVLGPNV 2270 56778888888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.16u 0.28s 00:00:01.44 Elapsed: 00:00:00.73 # Mc/sec: 10608.58 // Query: T293914_3 [L=2707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 11063.24 // Query: T124225_1 [L=2369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.66 # Mc/sec: 10268.65 // Query: T124225_2 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 9408.95 // Query: T124225_3 [L=2368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 10111.11 // Query: T317092_1 [L=4031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.016 15.0 6.4 0.084 12.7 6.4 2.3 1 EPF Epidermal patterning factor proteins Domain annotation for each model (and alignments): >> EPF Epidermal patterning factor proteins # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 6.4 5.2e-06 0.084 6 49 .. 1617 1659 .. 1615 1662 .. 0.76 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 5.2e-06 EPF 6 pPsCenkCgsCsPCkavqVkaaksssceeae.yypeaWkCkCgnk 49 PsCe+ C PC+ + ++ + +++ + ++ + C+C ++ T317092_1 1617 TPSCEHTCVHTHPCEHTYTHT--HTHTHAHTyTHAHTYTCTCTQR 1659 7*****************933..33344444257778*****876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1566 (0.0960383); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 160 (0.00981234); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 5.09u 0.53s 00:00:05.62 Elapsed: 00:00:01.28 # Mc/sec: 9009.38 // Query: T317092_2 [L=4030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1511 (0.0926653); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 156 (0.00956703); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.90u 0.57s 00:00:05.47 Elapsed: 00:00:01.12 # Mc/sec: 10293.88 // Query: T317092_3 [L=4030] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4030 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1573 (0.0964676); expected 326.1 (0.02) Passed bias filter: 336 (0.0206059); expected 326.1 (0.02) Passed Vit filter: 222 (0.0136146); expected 16.3 (0.001) Passed Fwd filter: 79 (0.00484484); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.09u 0.58s 00:00:06.67 Elapsed: 00:00:01.32 # Mc/sec: 8734.20 // Query: T032047_1 [L=8457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.55u 0.41s 00:00:02.96 Elapsed: 00:00:00.77 # Mc/sec: 31420.83 // Query: T032047_2 [L=8457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.60u 0.47s 00:00:03.07 Elapsed: 00:00:00.94 # Mc/sec: 25738.34 // Query: T032047_3 [L=8456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.58u 0.46s 00:00:03.04 Elapsed: 00:00:01.12 # Mc/sec: 21408.12 // Query: T111393_1 [L=2863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.67 # Mc/sec: 12224.71 // Query: T111393_2 [L=2863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.27s 00:00:01.39 Elapsed: 00:00:00.67 # Mc/sec: 12224.71 // Query: T111393_3 [L=2862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 467 (0.0286398); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.70 # Mc/sec: 11696.71 // Query: T279833_1 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.68 # Mc/sec: 3117.46 // Query: T279833_2 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 89 (0.00545811); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 3854.32 // Query: T279833_3 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.70 # Mc/sec: 3028.39 // Query: T099611_1 [L=6365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.22u 0.50s 00:00:02.72 Elapsed: 00:00:01.21 # Mc/sec: 15048.91 // Query: T099611_2 [L=6365] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6365 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.36s 00:00:02.29 Elapsed: 00:00:00.89 # Mc/sec: 20459.76 // Query: T099611_3 [L=6364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.39s 00:00:02.54 Elapsed: 00:00:00.83 # Mc/sec: 21935.33 // Query: T275671_1 [L=4008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.34s 00:00:02.10 Elapsed: 00:00:00.97 # Mc/sec: 11820.83 // Query: T275671_2 [L=4008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.36s 00:00:01.79 Elapsed: 00:00:00.81 # Mc/sec: 14155.81 // Query: T275671_3 [L=4007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.40s 00:00:01.90 Elapsed: 00:00:00.72 # Mc/sec: 15921.31 // Query: T006985_1 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.67 # Mc/sec: 2694.30 // Query: T006985_2 [L=630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.51 # Mc/sec: 3533.97 // Query: T006985_3 [L=630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 3834.73 // Query: T082951_1 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 4819.40 // Query: T082951_2 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.78 # Mc/sec: 4012.50 // Query: T082951_3 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.66 # Mc/sec: 4742.04 // Query: T366905_1 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 5381.32 // Query: T366905_2 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 6242.33 // Query: T366905_3 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 6114.32 // Query: T027833_1 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6970.52 // Query: T027833_2 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 7107.20 // Query: T027833_3 [L=1267] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1267 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48 # Mc/sec: 7551.40 // Query: T381515_1 [L=5313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.56 # Mc/sec: 27142.12 // Query: T381515_2 [L=5313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.56 # Mc/sec: 26665.95 // Query: T381515_3 [L=5312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.053 13.6 0.0 0.1 12.7 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6.2e-06 0.1 18 53 .. 1782 1817 .. 1777 1821 .. 0.89 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.2e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381515_3 1782 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1817 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.56 # Mc/sec: 27137.02 // Query: T186269_1 [L=1689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 525 (0.0321967); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46 # Mc/sec: 10504.22 // Query: T186269_2 [L=1689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1053 (0.0645775); expected 326.1 (0.02) Passed bias filter: 540 (0.0331166); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.53 # Mc/sec: 9116.87 // Query: T186269_3 [L=1689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.50 # Mc/sec: 9663.88 // Query: T110522_1 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46 # Mc/sec: 4844.75 // Query: T110522_2 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 4369.78 // Query: T110522_3 [L=779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4369.78 // Query: T069601_1 [L=699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 3999.44 // Query: T069601_2 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46 # Mc/sec: 4341.00 // Query: T069601_3 [L=698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-18 64.5 0.2 5.3e-18 64.5 0.2 2.3 2 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.5 0.06 9.8e+02 7 35 .. 378 405 .. 375 406 .. 0.73 2 ! 64.5 0.2 3.2e-22 5.3e-18 9 60 .. 507 555 .. 506 557 .. 0.97 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.06 Transposase_1 7 rsaqWldkgetpkkvpkpelhqkkvmltV 35 +q +k+ +++ + k el++ k+m +V T069601_3 378 TPSQFKKKERKKESFAK-ELRALKMMSIV 405 45677777888888887.59999999887 PP == domain 2 score: 64.5 bits; conditional E-value: 3.2e-22 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYa 60 aqWl +e+p+++pk hqk vm+tVwWsa++li+y f +p+etitse+Ya T069601_3 507 AQWLGPEEAPQHFPK---HQKQVMVTVWWSAASLIHYGFPNPSETITSEKYA 555 7*************7...8********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 4160.12 // Query: T369084_1 [L=2037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.49 # Mc/sec: 11892.88 // Query: T369084_2 [L=2037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.9 8.5 5.5 3.8 7.5 5.5 1.4 1 MRP-L28 Mitochondrial ribosomal protein L28 Domain annotation for each model (and alignments): >> MRP-L28 Mitochondrial ribosomal protein L28 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 5.5 0.00024 3.8 44 118 .. 140 219 .. 133 225 .. 0.80 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00024 XXXXXXXXXXXXXXX.....XXXXXXXX-HHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHH-HH CS MRP-L28 44 Pveelivplksvdsak...rrqrkllelskeelerrallekqwaryrqq..ekekdeqlirqqleaqeealeeLkkvsee 118 P +l + +s+ +++ + q +ll+l + l+++ l+e +w ++r+ ++d++ + +++e q++al+ L+k+ e T369084_2 140 PTHQLQMLERSLREEElraQHQAALLRLREMALQEKTLAELAWLEHRRGclDSKRDRAVLAALVEKQQQALSRLEKEQRE 219 66666666666666551114566778889999***************9633688999*******************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 10406.27 // Query: T369084_3 [L=2036] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2036 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10989.91 // Query: T076755_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 10893.59 // Query: T076755_2 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 10477.12 // Query: T076755_3 [L=1941] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-14 51.0 7.3 1.2e-13 50.5 7.3 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 7.3 7.6e-18 1.2e-13 149 321 .. 965 1133 .. 946 1135 .. 0.78 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 7.6e-18 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHTTTEEEEES----TT--HHHHHHHH.HHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 149 eervsaaedeieeidrevkerekrkkileq.slqviqdtvkrPnlrliGvdesedeqlkklenil.nkiieenfPnlkkeanviiqeiyrtPn 239 + r+ ae ei ++++ r+k+k ++++ lq + + + + lr+iG +e ++e+ +++e + ++ + + + + + + yrt T076755_3 965 NSRMDQAE-EIVNLKT--GLRQKKKNKNNK*CLQDLENSLTKTGLRVIGFKE-DVEKETGVEKFI*RDN-NRKLSKPRERYPNPTKKCYRTLS 1052 44444443.3444444..45667777788888******************98.7888888776544222.222333334556677889***** PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHH.HHHHHHHTT---EEETTTEEE CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtd.viqilkekkfqPrllyPakls 321 r++ k+++s+h i + kv+ k+ k v+ek ++t++G P l+ad++ etl arr+ + +++ lkek++ r+ y k+ T076755_3 1053 RFNPKKTTSKHSITNLQKVKEKKSSTK-VKEKKQITYRGAPTHLAADFTLETLSARRK-KQ*IFKALKEKNLYLRIAYTVKMF 1133 *******************99977655.9****************************7.68******************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1941 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 10283.09 // Query: T303075_1 [L=2132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 11959.39 // Query: T303075_2 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11289.68 // Query: T303075_3 [L=2131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.50 # Mc/sec: 12192.86 // Query: T035854_1 [L=3111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 14833.40 // Query: T035854_2 [L=3110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.57 # Mc/sec: 15339.97 // Query: T035854_3 [L=3110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 598 (0.0366736); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 15609.09 // Query: T210847_1 [L=3027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 14930.57 // Query: T210847_2 [L=3027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 15463.81 // Query: T210847_3 [L=3027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3027 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 15463.81 // Query: T353280_1 [L=2257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 12417.10 // Query: T353280_2 [L=2257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 12660.58 // Query: T353280_3 [L=2257] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00029 20.5 256.8 1.5 8.6 1.4 38.1 39 Toxin_16 Janus-atracotoxin Domain annotation for each model (and alignments): >> Toxin_16 Janus-atracotoxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 4.3 0.26 4.2e+03 13 19 .. 384 390 .. 379 392 .. 0.84 2 ! 7.4 0.6 0.00022 3.6 12 31 .. 580 600 .. 576 603 .. 0.89 3 ! 3.2 0.8 0.0046 74 13 31 .. 600 619 .. 599 624 .. 0.83 4 ! 8.6 1.4 9.4e-05 1.5 12 31 .. 637 657 .. 635 658 .. 0.89 5 ! 4.8 1.4 0.0015 25 11 31 .. 655 676 .. 653 677 .. 0.82 6 ! 3.2 0.5 0.0047 77 12 31 .. 675 695 .. 674 696 .. 0.87 7 ! 8.0 1.3 0.00015 2.5 12 31 .. 694 714 .. 684 719 .. 0.84 8 ! 2.1 0.1 0.0099 1.6e+02 15 31 .. 717 733 .. 710 734 .. 0.78 9 ! 7.8 0.7 0.00017 2.8 12 31 .. 732 752 .. 731 753 .. 0.89 10 ! 7.7 0.6 0.00018 2.9 12 31 .. 751 771 .. 749 773 .. 0.89 11 ! 4.2 0.4 0.0023 38 17 31 .. 775 790 .. 770 791 .. 0.87 12 ! 4.5 1.4 0.0018 29 13 31 .. 790 809 .. 788 810 .. 0.85 13 ! 7.3 0.8 0.00024 4 12 31 .. 808 828 .. 807 830 .. 0.89 14 ! 3.3 0.1 0.0042 69 17 31 .. 832 847 .. 829 848 .. 0.90 15 ! 7.7 0.5 0.00019 3 12 31 .. 846 866 .. 844 867 .. 0.89 16 ! 5.6 0.8 0.0008 13 12 29 .. 865 883 .. 863 885 .. 0.86 17 ! 4.8 0.1 0.0014 23 12 31 .. 884 904 .. 880 905 .. 0.81 18 ! 6.1 2.1 0.00056 9.1 12 31 .. 903 923 .. 902 927 .. 0.87 19 ! 4.4 0.7 0.002 33 16 31 .. 926 942 .. 921 943 .. 0.85 20 ! 7.1 1.1 0.00028 4.6 12 31 .. 941 961 .. 940 962 .. 0.89 21 ! 6.0 1.4 0.00063 10 13 31 .. 961 980 .. 959 981 .. 0.87 22 ! 7.7 0.7 0.00018 2.9 12 31 .. 979 999 .. 978 1000 .. 0.89 23 ! 6.6 1.4 0.00039 6.4 12 31 .. 998 1018 .. 997 1019 .. 0.89 24 ! 6.0 1.3 0.0006 9.9 13 31 .. 1018 1037 .. 1016 1038 .. 0.87 25 ! 7.5 0.9 0.00022 3.5 12 31 .. 1036 1056 .. 1035 1057 .. 0.89 26 ! 6.0 1.3 0.0006 9.7 13 31 .. 1056 1075 .. 1054 1076 .. 0.87 27 ! 6.6 1.5 0.0004 6.6 12 31 .. 1074 1094 .. 1073 1095 .. 0.89 28 ! 4.6 2.9 0.0017 27 13 31 .. 1094 1113 .. 1092 1117 .. 0.87 29 ! 3.3 0.8 0.0043 70 12 31 .. 1112 1132 .. 1111 1134 .. 0.84 30 ! 6.7 1.1 0.00037 6 12 31 .. 1131 1151 .. 1130 1152 .. 0.89 31 ! 7.6 0.8 0.00019 3.1 12 31 .. 1150 1170 .. 1149 1171 .. 0.89 32 ! 4.7 1.4 0.0015 25 12 31 .. 1169 1189 .. 1168 1190 .. 0.89 33 ! 7.5 0.6 0.00021 3.4 12 31 .. 1188 1208 .. 1187 1209 .. 0.89 34 ! 7.0 1.0 0.00031 5 12 31 .. 1207 1227 .. 1205 1229 .. 0.89 35 ! 2.3 0.9 0.009 1.5e+02 12 31 .. 1226 1246 .. 1225 1247 .. 0.85 36 ! 6.9 2.1 0.00031 5.1 12 31 .. 1245 1265 .. 1235 1266 .. 0.84 37 ! 6.6 1.4 0.00039 6.3 13 31 .. 1265 1284 .. 1264 1290 .. 0.88 38 ? -3.9 1.7 0.77 1.3e+04 13 19 .. 1296 1302 .. 1287 1307 .. 0.69 39 ? 0.1 3.3 0.041 6.8e+02 12 30 .. 1926 1944 .. 1923 1948 .. 0.82 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.26 Toxin_16 13 CCPCCPG 19 CCPC G T353280_3 384 CCPCATG 390 ****877 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00022 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 580 ASVPQCPGhTSCQITERDGAS 600 67899***99******99987 PP == domain 3 score: 3.2 bits; conditional E-value: 0.0046 Toxin_16 13 CCPCCP.GtsCkapesnGvs 31 P CP tsC+ e +G s T353280_3 600 SAPQCPeHTSCQITERDGAS 619 56889945*******99987 PP == domain 4 score: 8.6 bits; conditional E-value: 9.4e-05 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e++G s T353280_3 637 ASPPLCPGhTSCQITEPDGAS 657 55699***99*********87 PP == domain 5 score: 4.8 bits; conditional E-value: 0.0015 Toxin_16 11 AACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ +G s T353280_3 655 GASAPLCPGhTSCQITQRDGAS 676 5889*****99***98877766 PP == domain 6 score: 3.2 bits; conditional E-value: 0.0047 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG t C+ e +G s T353280_3 675 ASTPQCPGhTYCQITERDGAS 695 66799***889***9*99987 PP == domain 7 score: 8.0 bits; conditional E-value: 0.00015 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 694 ASAPLCPGhTSCQITERDGAS 714 668*****99*******9987 PP == domain 8 score: 2.1 bits; conditional E-value: 0.0099 Toxin_16 15 PCCPGtsCkapesnGvs 31 C tsC+ e +G s T353280_3 717 LCSGHTSCQITEKDGAS 733 46667********9987 PP == domain 9 score: 7.8 bits; conditional E-value: 0.00017 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 732 ASAPLCPGhTSCQITEKDGAS 752 6789****99*******9987 PP == domain 10 score: 7.7 bits; conditional E-value: 0.00018 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 751 ASAPQCPGhTSCQITEKDGAS 771 67899***99*******9987 PP == domain 11 score: 4.2 bits; conditional E-value: 0.0023 Toxin_16 17 CPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353280_3 775 CPGhTSCQITEKDGAS 790 99989******99987 PP == domain 12 score: 4.5 bits; conditional E-value: 0.0018 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e G s T353280_3 790 SPPQCPGhTSCQITERYGAS 809 5699***99***99998876 PP == domain 13 score: 7.3 bits; conditional E-value: 0.00024 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 808 ASTPQCPGhTSCQITEKDGAS 828 66899***99*******9987 PP == domain 14 score: 3.3 bits; conditional E-value: 0.0042 Toxin_16 17 CPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353280_3 832 CPGhTSCQIRERDGAS 847 99989******99987 PP == domain 15 score: 7.7 bits; conditional E-value: 0.00019 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 846 ASAPLCPGhTSCQITERDGAS 866 6789****99******99987 PP == domain 16 score: 5.6 bits; conditional E-value: 0.0008 Toxin_16 12 ACCPCCPG.tsCkapesnG 29 A P CPG tsC+ e +G T353280_3 865 ASAPQCPGhTSCQITERDG 883 67899***99***999888 PP == domain 17 score: 4.8 bits; conditional E-value: 0.0014 Toxin_16 12 ACCPCCP.GtsCkapesnGvs 31 A P CP tsC+ e +G s T353280_3 884 AAAPLCPrHTSCQITERDGAS 904 557889946*******99987 PP == domain 18 score: 6.1 bits; conditional E-value: 0.00056 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 903 ASAPQCPGhTSCQITERDGAS 923 67899***99******99987 PP == domain 19 score: 4.4 bits; conditional E-value: 0.002 Toxin_16 16 CCPG.tsCkapesnGvs 31 CPG tsC+ e +G s T353280_3 926 LCPGhTSCQITEKDGAS 942 599989*******9987 PP == domain 20 score: 7.1 bits; conditional E-value: 0.00028 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 941 ASAPHCPGhTSCQITEKDGAS 961 6789****99******99987 PP == domain 21 score: 6.0 bits; conditional E-value: 0.00063 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353280_3 961 SPPQCPGhTSCQITEKDGAS 980 5699***99*******9987 PP == domain 22 score: 7.7 bits; conditional E-value: 0.00018 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 979 ASAPLCPGhTSCQITEKDGAS 999 6789****99*******9987 PP == domain 23 score: 6.6 bits; conditional E-value: 0.00039 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 998 ASAPQCPGhTSCQITEKDGAS 1018 67899***99******99987 PP == domain 24 score: 6.0 bits; conditional E-value: 0.0006 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353280_3 1018 SPPQCPGhTSCQITEKDGAS 1037 5699***99*******9987 PP == domain 25 score: 7.5 bits; conditional E-value: 0.00022 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1036 ASAPLCPGhTSCQITEKDGAS 1056 6789****99******99987 PP == domain 26 score: 6.0 bits; conditional E-value: 0.0006 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353280_3 1056 SPPQCPGhTSCQITEKDGAS 1075 5699***99*******9987 PP == domain 27 score: 6.6 bits; conditional E-value: 0.0004 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1074 ASAPQCPGhTSCQITEKDGAS 1094 67899***99******99987 PP == domain 28 score: 4.6 bits; conditional E-value: 0.0017 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353280_3 1094 SPPQCPGhTSCQITEKDGAS 1113 5699***99*******9987 PP == domain 29 score: 3.3 bits; conditional E-value: 0.0043 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P C G tsC+ e +G s T353280_3 1112 ASAPLCTGhTSCQITEKDGAS 1132 5678888879*******9987 PP == domain 30 score: 6.7 bits; conditional E-value: 0.00037 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1131 ASAPQCPGhTSCQITERDGAS 1151 67899***99******99987 PP == domain 31 score: 7.6 bits; conditional E-value: 0.00019 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1150 ASAPLCPGhTSCQITEKDGAS 1170 6789****99*******9987 PP == domain 32 score: 4.7 bits; conditional E-value: 0.0015 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1169 ASAPQCPGhTSCEITEKDGAS 1189 67899***99******99987 PP == domain 33 score: 7.5 bits; conditional E-value: 0.00021 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1188 ASAPLCPGhTSCQITERDGAS 1208 6789****99******99987 PP == domain 34 score: 7.0 bits; conditional E-value: 0.00031 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1207 ASAPQCPGhTSCQITERDGAS 1227 67899***99******99987 PP == domain 35 score: 2.3 bits; conditional E-value: 0.009 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG t C+ e G s T353280_3 1226 ASAPLCPGhTYCQITERGGAS 1246 6789****889**99998876 PP == domain 36 score: 6.9 bits; conditional E-value: 0.00031 Toxin_16 12 ACCPCCPG.tsCkapesnGvs 31 A P CPG tsC+ e +G s T353280_3 1245 ASAPQCPGhTSCQITEQDGAS 1265 67899**999*******9987 PP == domain 37 score: 6.6 bits; conditional E-value: 0.00039 Toxin_16 13 CCPCCPG.tsCkapesnGvs 31 P CPG tsC+ e +G s T353280_3 1265 STPQCPGhTSCQITEQDGAS 1284 5799***99********988 PP == domain 38 score: -3.9 bits; conditional E-value: 0.77 Toxin_16 13 CCPCCPG 19 CPC G T353280_3 1296 LCPCVGG 1302 3888766 PP == domain 39 score: 0.1 bits; conditional E-value: 0.041 Toxin_16 12 ACCPCCPGtsCkapesnGv 30 ACC C ts + + G T353280_3 1926 ACCGCSHCTSGLGKSPRGR 1944 9********9988777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2257 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.40u 0.28s 00:00:01.68 Elapsed: 00:00:01.08 # Mc/sec: 5978.60 // Query: T368538_1 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.68 # Mc/sec: 9070.51 // Query: T368538_2 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 9201.62 // Query: T368538_3 [L=2155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.72 # Mc/sec: 8562.62 // Query: T164479_1 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.71 # Mc/sec: 13627.22 // Query: T164479_2 [L=3381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.76 # Mc/sec: 12726.93 // Query: T164479_3 [L=3381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.42s 00:00:01.65 Elapsed: 00:00:00.76 # Mc/sec: 12726.93 // Query: T124711_1 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 1702.66 // Query: T124711_2 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.65 # Mc/sec: 1624.07 // Query: T124711_3 [L=368] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (368 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.61 # Mc/sec: 1725.88 // Query: T081036_1 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2254 (0.138231); expected 326.1 (0.02) Passed bias filter: 698 (0.0428063); expected 326.1 (0.02) Passed Vit filter: 461 (0.0282718); expected 16.3 (0.001) Passed Fwd filter: 125 (0.00766589); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.48s 00:00:02.93 Elapsed: 00:00:00.89 # Mc/sec: 2581.18 // Query: T081036_2 [L=803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.83 8.2 13.2 1.1 7.8 13.2 1.1 1 SAPS SIT4 phosphatase-associated protein 9 4.8 27.4 14 4.2 27.4 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> SAPS SIT4 phosphatase-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 13.2 0.00014 1.1 248 343 .. 40 138 .. 27 203 .. 0.40 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00014 SAPS 248 kerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakd.......enkesdesesdtaeesseededdasseesalaeetee 340 +er ++rer +ee +++e+ e +++k++++ +e +++ + + ee+k++++ e++ ++ + +++++e ++ ++++e++ + +++ + T081036_2 40 EERKKERERRREERGRKKEEREKERRRKKKDKEKRKEGRNKERGKKEREEEKKERKrkkerkrEKERKERKVRKEEKERKK----KEKKERKKERKKERK 135 344445555444442222222222222222222222222222222222222222221111111111111111111111111....122222222222222 PP SAPS 341 klr 343 k r T081036_2 136 KER 138 222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 27.4 0.0017 14 234 314 .. 50 133 .. 29 164 .. 0.32 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0017 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassse...seeeeeeesaeaeseaeesseekeeeessesseeeeeeeeee 314 ++++ +++e+++ke++ ++++ke+++e +++e+ ++++e +e+++++e++++++++e++ +++e+e+++++++e+++e+++e T081036_2 50 REERGRKKEEREKERRRKKKDKEKRKEGRNKERGKKEREeekKERKRKKERKREKERKERKVRKEEKERKKKEKKERKKERKKE 133 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2364 (0.144977); expected 326.1 (0.02) Passed bias filter: 760 (0.0466086); expected 326.1 (0.02) Passed Vit filter: 472 (0.0289464); expected 16.3 (0.001) Passed Fwd filter: 122 (0.00748191); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.24u 0.44s 00:00:02.68 Elapsed: 00:00:01.06 # Mc/sec: 2167.21 // Query: T081036_3 [L=802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1985 (0.121734); expected 326.1 (0.02) Passed bias filter: 508 (0.0311542); expected 326.1 (0.02) Passed Vit filter: 282 (0.0172942); expected 16.3 (0.001) Passed Fwd filter: 66 (0.00404759); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.43s 00:00:01.97 Elapsed: 00:00:00.78 # Mc/sec: 2941.52 // Query: T370039_1 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.68 # Mc/sec: 5338.81 // Query: T370039_2 [L=1269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.62 # Mc/sec: 5855.47 // Query: T370039_3 [L=1268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.60 # Mc/sec: 6045.89 // Query: T338691_1 [L=2610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-11 43.7 1.7 1.7e-11 43.7 1.7 3.4 3 Integrase_Zn Integrase Zinc binding domain 2e-05 24.1 0.0 3.3e-05 23.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme ------ inclusion threshold ------ 0.015 15.2 3.8 0.044 13.7 3.8 1.8 1 zf-CCHC Zinc knuckle 0.035 13.7 5.7 0.098 12.2 5.7 1.8 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.7 1.7 4.2e-15 1.7e-11 4 37 .. 29 62 .. 27 63 .. 0.97 2 ? 0.5 0.2 0.13 5.4e+02 4 16 .. 1138 1150 .. 1136 1152 .. 0.84 3 ? -6.7 4.6 4 1.6e+04 28 37 .. 1166 1175 .. 1165 1176 .. 0.81 Alignments for each domain: == domain 1 score: 43.7 bits; conditional E-value: 4.2e-15 Integrase_Zn 4 sHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 sH+++HqN++ L+k+F++t + A++I+ +Cp+Cq T338691_1 29 SHQFFHQNWRNLSKQFHLTQRGAKQIILQCPDCQ 62 8********************************8 PP == domain 2 score: 0.5 bits; conditional E-value: 0.13 Integrase_Zn 4 sHelhHqNakaLr 16 +H+l+H++ k L+ T338691_1 1138 FHNLFHVGYKPLA 1150 8******988775 PP == domain 3 score: -6.7 bits; conditional E-value: 4 Integrase_Zn 28 eIVqsCptCq 37 I +C++C+ T338691_1 1166 KITSQCSICC 1175 67789****8 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 8e-09 3.3e-05 38 220 .. 622 766 .. 583 768 .. 0.69 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 8e-09 -------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST- CS RVT_1 38 lsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGs 136 +++ p+ + l++ +++ ++++ lDlk+aF+++pl+ +++l+af+ ++ + ++ ++ ++++lpq + T338691_1 622 IHPTVPNPYTL-------------LSSLPSStTHYSILDLKDAFFTIPLHPSSQPLFAFTWTDP------------------DTHQ-PQQLTWAVLPQAF 689 33333333333.............333444449****************************988..................3344.78899******** PP TTHHHHHHHHHHHHHTT-T......TEEECTTEEEE...EESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTE CS RVT_1 137 vlSPllfnlfmnellrelrkrakgvtllrYaDDili...lsks.keelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGv 220 SP f+ ++ l ++r +l+ Y D +l+ ++ks +++ + ++l + g++++p K ++ s++++yL + T338691_1 690 RDSPHYFSQALPCDLLSFRPS--ASHLIEYFDNLLL*npSYKSsQQDTLL----LLQHLFSKGYHVSPIKAQIS-----STSITYLSI 766 *******99987666666664..589999999998876533331333333....34444456888888888888.....788888866 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 3.8 1.1e-05 0.044 2 16 .. 320 334 .. 319 335 .. 0.90 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.1e-05 CTSSSSSSSSTTTTS CS zf-CCHC 2 kCynCGepGHiardC 16 +C++C++pGH+a+ C T338691_1 320 PCFRCQKPGHWASGC 334 7***********866 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 5.7 2.4e-05 0.098 2 20 .. 318 336 .. 317 337 .. 0.92 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.4e-05 --B-TTT-SSBS-TTT--- CS zf-CCHC_5 2 pglCpRCkkgkHwardChs 20 g C RC k Hwa+ Chs T338691_1 318 RGPCFRCQKPGHWASGCHS 336 688***************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2610 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.77 # Mc/sec: 9697.10 // Query: T338691_2 [L=2609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-23 81.0 0.0 1.2e-22 80.2 0.0 1.4 1 rve Integrase core domain 3.6e-09 36.8 0.0 6.3e-09 36.0 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.012 15.7 0.0 0.018 15.1 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 0.0 2.2e-26 1.2e-22 3 118 .. 1696 1806 .. 1694 1807 .. 0.94 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 2.2e-26 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p++lwq+Dvt+++ + ++ +y++v id+ s+li ++a++ e +++ vi+ l a+ + p ++ +Dng +y+s+ f++f+ ++i++ + p+ T338691_2 1696 EPNQLWQTDVTHVPEF--EKLKYVHVSIDTNSHLISTHALPGE-STQYVIKHLPLTSAFMRQ--PTKIKTDNGLAYASSLFQQFCHMWNIQHFTGIPY 1788 7*************55..556**********************.**********77777777..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 +pq +++vE + tlk++ T338691_2 1789 NPQRQAIVEHVHSTLKNR 1806 ****************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 1.2e-12 6.3e-09 3 85 .. 939 1027 .. 937 1068 .. 0.74 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 1.2e-12 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.........H CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.........k 85 +++++ DGs+ + +++++ag+ ++++ s++l++++t ++a L+A ++aL a ++ +vni tDSkY+++ +++ w T338691_2 939 DHTWFIDGSSTRPncHSPAKAGYaIVSS-----TSTALPHPTTSQQAKLIASTQALTlA--KGLRVNIHTDSKYAFHILHHRAIIWaerfphyvrV 1027 579******9876578888****55553.....58999999***************977..99**************5554444445555555550 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 3.4e-06 0.018 3 115 .. 1700 1812 .. 1698 1824 .. 0.82 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 3.4e-06 DDE_Tnp_IS240 3 swrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasayasalkelkregelfdevshvq....v 92 w+ D T v +k +Y+ +D ++ ++ + t+ +++ l + ++p +i tD ayas l ++++ +++++h + T338691_2 1700 LWQTDVTHVPEFEKLKYVHVSIDTNSHLISTHALPGESTQYVIKHLPLTSAFM-RQPTKIKTDNGLAYASSL---FQQFCHMWNIQHFTgipyN 1789 5999999999999*********************9999999999987776666.99************9864...5555557777777622224 PP DDE_Tnp_IS240 93 kylnnriEsdhrtlKkrlrptrg 115 + ++ ++E+ h+tlK+rl+ ++g T338691_2 1790 PQRQAIVEHVHSTLKNRLENKKG 1812 5677889**********988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 9951.87 // Query: T338691_3 [L=2609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-07 28.6 0.4 5.7e-07 28.6 0.4 1.7 2 IN_DBD_C Integrase DNA binding domain 2.8e-05 24.2 0.0 5.9e-05 23.2 0.0 1.4 1 RVP Retroviral aspartyl protease 0.00039 20.2 0.2 0.00039 20.2 0.2 2.3 3 GP41 Retroviral envelope protein 0.00065 19.8 0.0 0.0016 18.5 0.0 1.6 1 rve Integrase core domain ------ inclusion threshold ------ 0.012 15.6 0.6 0.03 14.2 0.6 1.6 1 Borrelia_orfX Orf-X protein Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.1 2.1 7e+03 27 42 .. 1226 1241 .. 1225 1241 .. 0.85 2 ! 28.6 0.4 1.7e-10 5.7e-07 4 43 .. 1856 1893 .. 1854 1894 .. 0.95 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 2.1 TEEEE..E-SS-EEEE CS IN_DBD_C 27 GavcvFPqdasdikwv 42 G v vFP + +++ +v T338691_3 1226 GWVQVFPTESEKATVV 1241 8899*****9998876 PP == domain 2 score: 28.6 bits; conditional E-value: 1.7e-10 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvP 43 v wkd++s+ +GP+ +L++grG++c s + w+P T338691_3 1856 AVLWKDVNSNVCCGPNDLLMWGRGYACA--HTPSGPLWIP 1893 699*************************..999******9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.0 1.8e-08 5.9e-05 9 96 .. 408 492 .. 403 494 .. 0.80 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 1.8e-08 EEETTE..EEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCC CS RVP 9 vkiggk..yieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqkl 96 v ++g+ i l+DtGA++ ++ + P + a +++ Gi g+ + ++ ++++ ++++ s+l++p +pv+llG ++++ T338691_3 408 VTLTGEgkSIPCLIDTGATHLSLPSFQGPVS----FAPTTVVGIDGQAPKPLKTP-SLWCQLRQHSFMYSFLVIPICPVPLLGMKHINQI 492 44443344999********************....99**********96555555.4555556666667**************9988886 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 2.9 9.6e+03 135 180 .. 1294 1343 .. 1291 1360 .. 0.49 2 ? -1.7 0.9 0.6 2e+03 145 191 .. 1444 1480 .. 1431 1486 .. 0.75 3 ! 20.2 0.2 1.2e-07 0.00039 1 76 [. 2350 2425 .. 2350 2429 .. 0.87 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 2.9 .HHHHHGCHHHHHHHHHHHH...HHHHHHCHHHHHHHHHHH.XXXXX... CS GP41 135 qslannfkslnWvsyikltv...liiavgvalrvvlivlll.lPvlfksl 180 +sl ++++ l+W s l +++ + ++l+ lll +P l++sl T338691_3 1294 RSLLKWIEDLHWQSSPILQKvysNTFTLMNSYSLLLYSLLLsFPFLYHSL 1343 47888999999987532221000222222333344444433146666665 PP == domain 2 score: -1.7 bits; conditional E-value: 0.6 HHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........XXX... CS GP41 145 nWvsyikltvliiavgvalrvvlivllllPvlfkslakslqqvraev 191 +W+s ++ + + + + +lll P++f +l+ ++ q + + T338691_3 1444 DWIS-------LVLSILSPSIPVFLLLLGPCVF-CLVCQFIQSH--I 1480 4544.......788888888999999999****.9999888877..3 PP == domain 3 score: 20.2 bits; conditional E-value: 1.2e-07 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHH..HHE..CCSHHHCX CS GP41 1 vaavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlk..lrChanykliCvT 76 va +s++ +vq+at+v++l knv + l Q+ id k a + l+ + +G+ +l ++++ ++k iCvT T338691_3 2350 VAVASITESVQTATFVDNLAKNVSNQLLLQQGIDEKTLACLRTLDAASEYVGEWQDALAFRQQ*nWDW--EHKHICVT 2425 5789****************************************999999999999999888543555..67777776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 4.9e-07 0.0016 4 92 .. 1197 1281 .. 1194 1281 .. 0.82 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 4.9e-07 rve 4 pgelwqvDvtvgr.ipdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgi 92 p + wq+ +t+++ + + +yllv++ +f++++ ++++ +e +a +vi l + ++g p + sDn +++++ ++++ + lgi T338691_3 1197 PAQDWQINFTHMP*VRKL---KYLLVWVGTFTGWVQVFPTESE-KATVVISSLLSDIIPQFGL-PTSIQSDNRLAFINQVTQAVSQALGI 1281 677788888877666544...5*********************.7777777777777777777.***************99999998887 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.6 9.4e-06 0.03 56 80 .. 1697 1721 .. 1693 1745 .. 0.89 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 9.4e-06 Borrelia_orfX 56 litsgkqmlltflnldvlnmfmfll 80 li gkqml t lnl+ lnm+m+ l T338691_3 1697 LISYGKQMLHTSLNLKNLNMYMYPL 1721 899*******************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.14u 0.27s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 10976.33 // Query: T258966_1 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 447 (0.0274132); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.32s 00:00:01.51 Elapsed: 00:00:00.69 # Mc/sec: 11198.70 // Query: T258966_2 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 10883.24 // Query: T258966_3 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 6.7 6.6 9.6 5.8 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00059 9.6 6 41 .. 1760 1795 .. 1746 1806 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00059 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258966_3 1760 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1795 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 10585.07 // Query: T040987_1 [L=1341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.63 # Mc/sec: 6089.48 // Query: T040987_2 [L=1341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.8 0.0 0.03 14.6 0.0 1.6 1 Ank Ankyrin repeat 0.014 15.8 0.0 0.025 15.0 0.0 1.4 1 Ank_2 Ankyrin repeats (3 copies) 0.023 15.1 0.0 0.063 13.7 0.0 1.7 1 Ank_3 Ankyrin repeat 0.14 12.4 0.1 0.28 11.5 0.1 1.5 1 Ank_5 Ankyrin repeats (many copies) Domain annotation for each model (and alignments): >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.0 7.4e-06 0.03 4 24 .. 1 21 [. 1 31 [. 0.86 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 7.4e-06 BHHHHHHHHTTHHHHHHHHTT CS Ank 4 TPLHlAatngkkriiklLLhG 24 T+LH+A+ ng+++++ +L+++ T040987_2 1 TALHWACVNGHAEVVTFLVDR 21 9****************9954 PP >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.0 0.0 6.2e-06 0.025 56 80 .. 1 25 [. 1 30 [. 0.83 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 6.2e-06 Ank_2 56 taLhlAarsghleivklLlekgadi 80 taLh+A+ +gh e+v +L+++++++ T040987_2 1 TALHWACVNGHAEVVTFLVDRKCQL 25 8999999999999999999876665 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 1.5e-05 0.063 4 28 .. 1 24 [. 1 27 [. 0.87 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.5e-05 Ank_3 4 tpLhlAarsgrpeivkfLlenlgad 28 t+Lh+A+ +g+ e+v fL++ + + T040987_2 1 TALHWACVNGHAEVVTFLVD-RKCQ 24 89*****************9.6654 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.1 7e-05 0.28 18 44 .. 1 27 [. 1 31 [. 0.90 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 7e-05 Ank_5 18 tpLhlAakggalevvrlLlargadlnl 44 t+Lh+A+ +g++evv +L++r + l++ T040987_2 1 TALHWACVNGHAEVVTFLVDRKCQLDV 27 89*****************99888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.69 # Mc/sec: 5559.96 // Query: T040987_3 [L=1340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.68 # Mc/sec: 5637.52 // Query: T201492_1 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.82 # Mc/sec: 5808.88 // Query: T201492_2 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-36 123.8 1.0 1e-35 123.1 1.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 123.1 1.0 6.4e-40 1e-35 1 195 [. 897 1111 .. 897 1146 .. 0.89 Alignments for each domain: == domain 1 score: 123.1 bits; conditional E-value: 6.4e-40 EE-TT.......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB CS RVT_1 1 ipKkg......pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpl 85 ipK+g ++++Rpis +++++k+lnk++a + ++++kl+++nq+gf pg + + ++ +++++++k ++++++++++D +kaFd+++ T201492_2 897 IPKPGrdttkrKENFRPISRMNINVKILNKILAn*iQ---QHIKKLIHHNQVGFIPGMQGWFNTrksiNVIHHINKTNNNNHMMISIDAEKAFDKIQK 991 788888888888*******************964434...688888***************999**999999999999999***************** PP -GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEE CS RVT_1 86 eellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDilils 174 ++ l l++++v+ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ T201492_2 992 PFMLTSLNKLGVDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADHMIVYL 1089 ************************************99*********************************99************************* PP SS.HHHHHHHHHHHHHHHHHTT CS RVT_1 175 ks.keelqelleaveewlkesg 195 ++ ++ +ll+ +++ ++ + T201492_2 1090 ENlIVSAPNLLKLISKLQQSLR 1111 **65665555555554444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7004.83 // Query: T201492_3 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-09 34.6 0.9 2.9e-08 33.0 0.9 2.0 1 DUF1725 Protein of unknown function (DUF1725) 0.0046 17.1 0.1 0.019 15.1 0.1 2.0 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.0 0.9 3.6e-12 2.9e-08 1 19 [] 1623 1641 .. 1623 1641 .. 0.98 Alignments for each domain: == domain 1 score: 33.0 bits; conditional E-value: 3.6e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +FagKWM+LE IILS+ sQ T201492_3 1623 SFAGKWMKLESIILSKLSQ 1641 7*****************9 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.1 2.3e-06 0.019 1 49 [. 394 438 .. 394 614 .. 0.73 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 2.3e-06 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlpll 49 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ T201492_3 394 LTLNVNG----LNAPIKRHRLANWIKNEDPSVCCIQETHLTCRDTYRLK 438 699****....7778899*******************988776665544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 719 (0.0440942); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 6615.67 // Query: T074879_1 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 2177.14 // Query: T074879_2 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 2569.03 // Query: T074879_3 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00032 20.2 0.0 0.00051 19.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.2e-08 0.00051 179 222 .] 251 314 .. 242 314 .. 0.82 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.2e-08 H....HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 179 e....lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + +++ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T074879_3 251 ApshpAKNLLKLISNFSKVSGYKINVQKSQAFLYtnntqtesqimSElpftiASKRIKYLGIQL 314 24446899************************99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 2418.21 // Query: T126028_1 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.74 # Mc/sec: 6324.75 // Query: T126028_2 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 7429.08 // Query: T126028_3 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.69 # Mc/sec: 6783.07 // Query: T277488_1 [L=2901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 11215.23 // Query: T277488_2 [L=2901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.68 # Mc/sec: 12204.81 // Query: T277488_3 [L=2901] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2901 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:00.75 # Mc/sec: 11065.69 // Query: T337517_1 [L=10567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.04u 0.44s 00:00:03.48 Elapsed: 00:00:00.96 # Mc/sec: 31489.99 // Query: T337517_2 [L=10566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.93u 0.58s 00:00:03.51 Elapsed: 00:00:01.05 # Mc/sec: 28788.12 // Query: T337517_3 [L=10566] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10566 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.88u 0.42s 00:00:03.30 Elapsed: 00:00:01.11 # Mc/sec: 27232.01 // Query: T092434_1 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1074 (0.0658653); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 1508.86 // Query: T092434_2 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1260 (0.0772722); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 1732.39 // Query: T092434_3 [L=327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 959 (0.0588127); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.72 # Mc/sec: 1299.29 // Query: T369315_1 [L=3680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.76 # Mc/sec: 13852.44 // Query: T369315_2 [L=3680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.42s 00:00:01.85 Elapsed: 00:00:00.81 # Mc/sec: 12997.35 // Query: T369315_3 [L=3679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.39s 00:00:01.71 Elapsed: 00:00:00.70 # Mc/sec: 15035.71 // Query: T076694_1 [L=3222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.69 # Mc/sec: 13358.83 // Query: T076694_2 [L=3221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.74 # Mc/sec: 12452.34 // Query: T076694_3 [L=3221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.67 # Mc/sec: 13753.33 // Query: T133005_1 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.55 # Mc/sec: 2044.19 // Query: T133005_2 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.55 # Mc/sec: 2044.19 // Query: T133005_3 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 2121.33 // Query: T041684_1 [L=3456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.66 # Mc/sec: 14980.35 // Query: T041684_2 [L=3456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3456 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.29s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 13925.39 // Query: T041684_3 [L=3455] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3455 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.68 # Mc/sec: 14535.54 // Query: T376187_1 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-165 549.4 20.6 6.8e-165 549.4 20.6 1.7 2 DUF4641 Domain of unknown function (DUF4641) Domain annotation for each model (and alignments): >> DUF4641 Domain of unknown function (DUF4641) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.5 0.23 3.7e+03 339 368 .. 333 362 .. 332 398 .. 0.80 2 ! 549.4 20.6 4.1e-169 6.8e-165 1 425 [. 792 1199 .. 792 1202 .. 0.98 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.23 DUF4641 339 pvpkaqlpthrpgppclsvhrgEfssGdln 368 p++ +q+p+ p p+++ + + ssG+l T376187_1 333 PGLTVQVPACSPPPRSKPALQTDTSSGELM 362 677899999999999999999999999975 PP == domain 2 score: 549.4 bits; conditional E-value: 4.1e-169 DUF4641 1 egrpgspvddeedaldflsqladEaaaivqqlsdldargvrrnpspescaaelsa.lwadleagpsgRgalalssveskqasaaplhlsglergrawg 97 egrpg+pvdd+ ++ d++++ladE+a+i+++ s v+ +pspe+++a+ s+ +wadle+gps+Rgal++s++e++qasa+plhls+++ g+aw+ T376187_1 792 EGRPGTPVDDQAGGGDYSFYLADEPATIMPPSS------VQGHPSPEGATAKGSTdIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWE 883 8********************************......*********************************************************** PP DUF4641 98 npkrgtksrmvvsedvqrps.eeglvglpsdsessDElseiqlmrVsiclkeggqakssspkelgdtprhsnvhgrenflhvpgslltsaprgltsvv 194 np+rg+ksr+++++d+q+ps e+++ +++ds+s+DE+s++ ++rV i++keg+qak+ spk++gdt+ + ++h re++l+v+g+ll s pr+lt+vv T376187_1 884 NPERGSKSRLSFQVDPQQPSaEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKPGDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVV 981 ********************66667778899******************************************************************* PP DUF4641 195 erqavgElessssKKmqsvvwgkggsrPSypgatAaaaaaaGaLpkatprkKvaqeKkslgdaSkvalGrafpsWGqRlsaaplepatfPPisGvpLl 292 er+avgEl++ s KKmqs+vwgk+g+rPS++ga a+ G Lp++t +KvaqeKksl++a+++al afp+WGqRlsa+p++pa+fPP+sGv+Ll T376187_1 982 ERPAVGELDVPSLKKMQSMVWGKRGVRPSCSGA-----AVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPPVSGVGLL 1074 *********************************.....9*********************************************************** PP DUF4641 293 GkskkvsllpsgpkqskhtgtGKksvarktresqavakeDndpkrDpvpkaqlpthrpgppclsvhrgEfssGdlntRapqvpgnsqplalsqggvlP 390 Gks + pk++kh+++GKk+++rktresqa+a+eDndp+rD+vp+aqlpt++p++ +lsv+rgE+ssGd+n+Rapqv g+sqp+a++ ++++P T376187_1 1075 GKSVR-------PKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVP 1165 ***99.......************************************************************************************** PP DUF4641 391 RgpapSgdqeppvrpprpeeqqqppqGaqgCprcv 425 R +a Sgd++ppv+pprpe+qqqpp GaqgCpr + T376187_1 1166 RCHASSGDWQPPVHPPRPERQQQPP-GAQGCPRVM 1199 ******************7777766.*******86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.63 # Mc/sec: 6257.50 // Query: T376187_2 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.73 # Mc/sec: 5400.31 // Query: T376187_3 [L=1378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 6570.37 // Query: T216315_1 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 6260.17 // Query: T216315_2 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6254.56 // Query: T216315_3 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 6786.86 // Query: T169753_1 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 257 (0.0157611); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.44 # Mc/sec: 7808.77 // Query: T169753_2 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47 # Mc/sec: 7310.33 // Query: T169753_3 [L=1200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 10.9 0.2 3.4 6.9 0.5 2.0 2 DUF3616 Protein of unknown function (DUF3616) Domain annotation for each model (and alignments): >> DUF3616 Protein of unknown function (DUF3616) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 0.0098 1.6e+02 229 274 .. 565 610 .. 564 624 .. 0.85 2 ? 6.9 0.5 0.00021 3.4 68 114 .. 851 896 .. 846 914 .. 0.83 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.0098 DUF3616 229 GiRdLcldgddLliLaGptmdldgpvrvfrlkgalkasenslvkqe 274 GiR+Lcl+ + + L G + +++++ f+++++ + +++k++ T169753_3 565 GIRNLCLSREATVFLLGTIVVENSHIHTFHFPKVSHRPMWVISKED 610 9*******************99*********999988777776666 PP == domain 2 score: 6.9 bits; conditional E-value: 0.00021 DUF3616 68 WlvGShslkRkkpkeekseeknlerLakvkedanryllariplvkek 114 W + hs+ +kk k++k++ ++ +rL+ +++ n ++l+ + l+ ++ T169753_3 851 WETEQHSVSKKKKKKKKRK-EKKKRLGAMAHTCNPITLGEVSLKPRS 896 8888999999988866655.7789****************9997665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 691 (0.042377); expected 326.1 (0.02) Passed bias filter: 402 (0.0246535); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.49 # Mc/sec: 7006.11 // Query: T111411_1 [L=3071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 7.4 22.9 1.5 6.8 22.9 1.1 1 SSP160 Special lobe-specific silk protein SSP160 Domain annotation for each model (and alignments): >> SSP160 Special lobe-specific silk protein SSP160 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 22.9 9e-05 1.5 671 706 .. 1697 1733 .. 1686 1768 .. 0.54 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 9e-05 SSP160 671 gsvpdeattttssttttttttttaapttttt.kaana 706 sv ++tttt++tttt+ttttt++ ttttt ++ a T111411_1 1697 CSVTTATTTTTTTTTTTATTTTTTTTTTTTTtTTTTA 1733 4665555555444444433333332222222022222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 671 (0.0411505); expected 326.1 (0.02) Passed bias filter: 252 (0.0154544); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.54 # Mc/sec: 16269.65 // Query: T111411_2 [L=3071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 472 (0.0289464); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.53 # Mc/sec: 16576.62 // Query: T111411_3 [L=3070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.53 # Mc/sec: 16571.22 // Query: T293625_1 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00045 19.7 2.1 0.0011 18.4 2.1 1.8 1 DUF1725 Protein of unknown function (DUF1725) 0.00059 19.3 0.0 0.0011 18.4 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.47 10.7 5.3 0.98 9.6 5.3 1.4 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 2.1 2.1e-07 0.0011 7 19 .] 3165 3177 .. 3165 3177 .. 0.99 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 2.1e-07 DUF1725 7 MELEnIILSEisQ 19 MELE+IILSE++Q T293625_1 3165 MELETIILSEVTQ 3177 ************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 2e-07 0.0011 126 158 .. 2513 2545 .. 2511 2560 .. 0.84 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 2e-07 EEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 126 ryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++ g++qG++lSPl+fn++++ l r +r++ T293625_1 2513 FPLRPGTRQGCPLSPLVFNIVLEVLARAIRQEK 2545 677789***********************9965 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 5.3 0.00018 0.98 8 31 .. 3122 3145 .. 3119 3151 .. 0.79 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00018 Mit_proteolip 8 nvWiplkpyYtqvYqeIwvemglm 31 n Wi Y+++Y++I++ +++ T293625_1 3122 NEWIKKMYIYIYIYIYIYICTHTH 3145 889987777888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.54 # Mc/sec: 17493.45 // Query: T293625_2 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-27 93.8 5.0 2.1e-24 85.9 1.8 2.3 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 1.9 8.7 7.9 1 9.6 5.0 1.9 2 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.9 1.8 2.6e-28 2.1e-24 190 273 .. 1562 1643 .. 1539 1658 .. 0.92 2 ! 8.5 0.1 8.9e-05 0.73 329 354 .. 1699 1726 .. 1697 1735 .. 0.81 Alignments for each domain: == domain 1 score: 85.9 bits; conditional E-value: 2.6e-28 TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS- CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGr 273 Pnlr+iGv+e+e e+ k leni++ ii+enfP l+++++++iqe++rt +++ kr s+rhii+r++kv +k+ il avr+k T293625_2 1562 PNLRIIGVPEEE-EKSKSLENIFEGIIKENFPGLARDLDIQIQEAQRTLEKFIAKR-SPRHIIIRLSKVTMKEIILSAVRQKAS 1643 9********976.6889************************************999.7***********************975 PP == domain 2 score: 8.5 bits; conditional E-value: 8.9e-05 EEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 329 kvfidktklrdylstrPalkrllke..k 354 ++f dk++ r++ +t+Pa++++ k + T293625_2 1699 RYFSDKQMQREFATTKPAVQEVQKGvlN 1726 79*******************9886444 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.47 3.8e+03 24 47 .. 1119 1143 .. 1118 1149 .. 0.81 2 ? 9.6 5.0 0.00012 1 17 36 .. 3130 3149 .. 3127 3164 .. 0.60 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.47 Mit_proteolip 24 Iwvemglm.gfivykirsADkaska 47 I+v + l+ fi + +ADk + T293625_2 1119 IYVSVELLrVFIRSALGAADKQVSK 1143 88988876369*********98765 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00012 Mit_proteolip 17 YtqvYqeIwvemglmgfivy 36 Y+++Y++I+++ ++ ++ y T293625_2 3130 YIYIYIYIYIYAHTHTMEYY 3149 77777777777776665434 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 524 (0.0321354); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.52 # Mc/sec: 18166.27 // Query: T293625_3 [L=3302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-22 80.1 3.0 2.9e-22 79.1 3.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym ------ inclusion threshold ------ 0.65 10.2 5.0 1.7 8.9 5.0 1.6 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.1 3.0 3.6e-26 2.9e-22 2 208 .. 2379 2603 .. 2378 2624 .. 0.81 Alignments for each domain: == domain 1 score: 79.1 bits; conditional E-value: 3.6e-26 E-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 2 pKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgr....stldaveellkalkkkkkaklllklDlkkaFdsvpleellr 90 pK+g +++yRpi l+++d k lnk++a+r++++++k+++++q+gf pg ++++++++++++++ k+k+++++++D +kaFd+++ ++ ++ T293625_3 2379 PKPGkdiikKENYRPIFLINIDAKFLNKILANRIQQHINKIIHHDQVGFIPGMqg*fNIHKSINVMHHINRIKNKNHTIISIDTEKAFDKIQRHFMIK 2476 666666777789****************************************63333688888999999999************************** PP GGG-EEET...................................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHH CS RVT_1 91 kltafkvptklinliksflstrsfsvrvngee..........segryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskske 178 +l ++ ++ + +n+ik++ + ++++ +ng + +++ ++ +++ q s+ SP+ +n + + ++ k +++l+++a ++i+ ++++ T293625_3 2477 TLSKIDIEGTYLNVIKAIDDKLTANIILNGGKlkafppktwnKTRMPTFTTCIQHSTGSPSQSNQTREIKGIQIGK--GEIKLSLFANNMIIYLENPK 2572 ****************998888888888776401111111113445555666677777777777777776666666..59****************66 PP H.HHHHHHHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 179 e.lqelleaveewlkesglkinpeKtklvlf 208 + +++l+ + e+ k sg+k n +K ++l+ T293625_3 2573 DsSNKHLDLINEFGKVSGYKANVHKLIALLY 2603 66***********************988876 PP >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 5.0 0.0002 1.7 17 32 .. 3129 3144 .. 3123 3145 .. 0.90 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0002 Mit_proteolip 17 YtqvYqeIwvemglmg 32 Y+++Y++I+++m++ + T293625_3 3129 YIYIYIYIYIYMHTHT 3144 9************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.50 # Mc/sec: 18892.92 // Query: T286604_1 [L=239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.45 # Mc/sec: 1519.42 // Query: T286604_2 [L=239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.46 # Mc/sec: 1486.39 // Query: T286604_3 [L=238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-17 63.0 0.1 2.7e-17 62.7 0.1 1.1 1 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel dom Domain annotation for each model (and alignments): >> Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.7 0.1 1.7e-21 2.7e-17 103 165 .. 41 108 .. 34 122 .. 0.89 Alignments for each domain: == domain 1 score: 62.7 bits; conditional E-value: 1.7e-21 SGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS.....CHHHHHHHHHHHHHHH-TTSEEEEETCSS CS Glyco_hydro_2_C 103 npewlkavldrieelverdkNHpsviiWSlgNEs.....gagedikalaelikklDptRlvhyegvaa 165 n+ + ++++ ++ee v rdkNHp++++WS++NE+ +ag+ +k++++++k+lDp+ +v+++ +++ T286604_3 41 NNVSMHHHMWVVEEPVLRDKNHPAMVMWSVANEPasfleSAGYSFKMVIAHTKALDPSQPVTFVTNST 108 5567899*********************************************************9943 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1448.68 // Query: T211120_1 [L=1766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 9906.33 // Query: T211120_2 [L=1766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0016 18.3 12.7 0.52 10.1 0.3 3.5 3 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 0.3 3.2e-05 0.52 29 69 .. 1339 1379 .. 1324 1379 .. 0.78 2 ! 8.3 0.7 0.00012 2 42 69 .. 1422 1449 .. 1416 1454 .. 0.63 3 ! 6.6 1.0 0.00039 6.3 43 72 .. 1453 1482 .. 1449 1484 .. 0.80 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.2e-05 Lamprin 29 stlstgflghpvgglgygglgygglgvaglgvaglgygglg 69 s + + g + glg+ lg+ gl + g+agl + glg T211120_2 1339 SCFRSHGPGAGLAGLGWAELGWAGLNWVEPGLAGLTWAGLG 1379 55555555777889999999999999999999999999998 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00012 Lamprin 42 glgygglgygglgvaglgvaglgygglg 69 lg+ gl + lg+a g aglg+ gl T211120_2 1422 NLGWAGLCWAELGWAEPGRAGLGWAGLN 1449 4666666666666666667777776665 PP == domain 3 score: 6.6 bits; conditional E-value: 0.00039 Lamprin 43 lgygglgygglgvaglgvaglgygglgypg 72 lg+ lg+ gl + g+agl + glg g T211120_2 1453 LGWAELGWAGLNWVKPGLAGLTWAGLGCAG 1482 788888888888888888888888888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 9906.33 // Query: T211120_3 [L=1765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 9527.10 // Query: T138229_1 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.31 10.8 1.2 14 5.5 1.2 3.0 1 Ubiquitin_3 Ubiquitin-like domain Domain annotation for each model (and alignments): >> Ubiquitin_3 Ubiquitin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 1.2 0.00088 14 73 87 .. 51 65 .. 2 83 .. 0.75 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.00088 EEEEEEE--TTS--T CS Ubiquitin_3 73 qvllleekdemgnWp 87 qvl++ e +mg+W+ T138229_1 51 QVLVMMEIADMGAWA 65 666666666666663 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.47 # Mc/sec: 517.38 // Query: T138229_2 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 16 (0.000981234); expected 326.1 (0.02) Passed bias filter: 6 (0.000367963); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.47 # Mc/sec: 517.38 // Query: T138229_3 [L=85] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (85 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 97 (0.00594873); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.48 # Mc/sec: 506.61 // Query: T294007_1 [L=1824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 10231.67 // Query: T294007_2 [L=1824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 10034.91 // Query: T294007_3 [L=1824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 10034.91 // Query: T289910_1 [L=16721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.93u 0.52s 00:00:04.45 Elapsed: 00:00:00.81 # Mc/sec: 59056.71 // Query: T289910_2 [L=16721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 580 (0.0355697); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.99u 0.46s 00:00:04.45 Elapsed: 00:00:00.82 # Mc/sec: 58336.51 // Query: T289910_3 [L=16720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (16720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.78u 0.47s 00:00:04.25 Elapsed: 00:00:00.85 # Mc/sec: 56274.21 // Query: T062663_1 [L=5424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.30s 00:00:01.60 Elapsed: 00:00:00.57 # Mc/sec: 26753.69 // Query: T062663_2 [L=5424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.79 # Mc/sec: 19641.95 // Query: T062663_3 [L=5424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.39s 00:00:02.19 Elapsed: 00:00:00.86 # Mc/sec: 18043.19 // Query: T073910_1 [L=231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.46 # Mc/sec: 1436.63 // Query: T073910_2 [L=231] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (231 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.69 # Mc/sec: 957.76 // Query: T073910_3 [L=230] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.8 11.6 0.0017 18.6 11.6 2.3 1 WAP WAP-type (Whey Acidic Protein) 'four-disulfide core Domain annotation for each model (and alignments): >> WAP WAP-type (Whey Acidic Protein) 'four-disulfide core' # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 11.6 1e-07 0.0017 15 46 .] 130 172 .. 96 172 .. 0.65 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 1e-07 WAP 15 a..........stcsdeCssDsdCpgnqKCC.ssgcgrvCveP 46 + C +D+dC++ +KCC + cg +C++P T073910_3 130 QaskqqskistYCSGIPCINDYDCRDLRKCCgTFRCGLRCIHP 172 0555554444344556788************8778**88**98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (230 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 239 (0.0146572); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.60 # Mc/sec: 1096.65 // Query: T125966_1 [L=1760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.69 # Mc/sec: 7297.19 // Query: T125966_2 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.73 # Mc/sec: 6893.42 // Query: T125966_3 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.74 # Mc/sec: 6800.27 // Query: T103992_1 [L=617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.66 # Mc/sec: 2674.44 // Query: T103992_2 [L=616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 2842.37 // Query: T103992_3 [L=616] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (616 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.64 # Mc/sec: 2753.55 // Query: T272756_1 [L=605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.55 # Mc/sec: 3146.91 // Query: T272756_2 [L=605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 55 (0.00337299); expected 326.1 (0.02) Passed bias filter: 31 (0.00190114); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 3146.91 // Query: T272756_3 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00095 18.6 1.2 0.0048 16.4 0.1 2.6 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.1 0.076 1.2e+03 11 21 .] 303 313 .. 302 313 .. 0.87 2 ! 16.4 0.1 2.9e-07 0.0048 4 20 .. 402 418 .. 402 419 .. 0.91 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.076 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272756_3 303 WRGFVLTRSFR 313 9***9988886 PP == domain 2 score: 16.4 bits; conditional E-value: 2.9e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272756_3 402 VTVMQAHVRGWLERKRL 418 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 379 (0.023243); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.48 # Mc/sec: 3599.88 // Query: T153832_1 [L=3891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.39s 00:00:02.00 Elapsed: 00:00:00.78 # Mc/sec: 14271.14 // Query: T153832_2 [L=3891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.36s 00:00:01.98 Elapsed: 00:00:00.82 # Mc/sec: 13574.99 // Query: T153832_3 [L=3891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 616 (0.0377775); expected 326.1 (0.02) Passed bias filter: 262 (0.0160677); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.24u 0.42s 00:00:02.66 Elapsed: 00:00:00.79 # Mc/sec: 14090.49 // Query: T350671_1 [L=4724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.25 10.4 0.7 0.39 9.7 0.7 1.1 1 Reoviridae_Vp9 Reoviridae VP9 Domain annotation for each model (and alignments): >> Reoviridae_Vp9 Reoviridae VP9 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.7 2.4e-05 0.39 159 232 .. 111 190 .. 88 197 .. 0.78 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 2.4e-05 EEEEEEEEEEESB-TT-S---EEEEEEEEEGGG--GG....GEEEESSS--HHHHHHHHHHTTS-.GG.GB----EEEE- CS Reoviridae_Vp9 159 tGkvyvlfitslsttasksnsyaysacvvpiedwdfk....kikltaetscasltamtslvnsll.eG.erarvvGlyvd 232 G+ +++f s+ + s++ s c vp++ + + tscasl+ +l + +G r++ Gly + T350671_1 111 NGSWCLVFSVSIGPLCILAFSFSLSNCCVPHDLLSLQeswhSVWALLSTSCASLDESINLSALISsPGpSRSPSCGLYPE 190 6999********99999**************86544311114555668*******99999887752454799999**966 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.73u 0.37s 00:00:02.10 Elapsed: 00:00:00.95 # Mc/sec: 14225.85 // Query: T350671_2 [L=4723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.39s 00:00:02.06 Elapsed: 00:00:00.88 # Mc/sec: 15354.20 // Query: T350671_3 [L=4723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.36s 00:00:01.97 Elapsed: 00:00:00.74 # Mc/sec: 18259.05 // Query: T294001_1 [L=1532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 7428.46 // Query: T294001_2 [L=1532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.74 # Mc/sec: 5922.69 // Query: T294001_3 [L=1532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 6445.28 // Query: T325744_1 [L=2177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 10737.98 // Query: T325744_2 [L=2177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.74 # Mc/sec: 8416.25 // Query: T325744_3 [L=2177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.093 11.9 7.9 0.55 9.3 1.8 2.3 2 DUF1943 Domain of unknown function (DUF1943) 7.9 6.5 8.3 13 5.8 8.3 1.2 1 DUF1997 Protein of unknown function (DUF1997) Domain annotation for each model (and alignments): >> DUF1943 Domain of unknown function (DUF1943) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 1.8 6.7e-05 0.55 248 297 .. 14 61 .. 2 66 .. 0.81 2 ? 7.7 1.2 0.00022 1.8 220 287 .. 53 111 .. 51 122 .. 0.77 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 6.7e-05 DUF1943 248 svsvevvatmgvdpelvqsgvkvksnlhsstplkakvkldlgkkelklkl 297 + ve v t+ v + v++gvkvk ++ +++++ka+v++++ +++lk+ T325744_3 14 VMMVELVKTVEVRM-EVRTGVKVKVKVEVRMEVKAEVRMKVR-IKVRLKV 61 67789999999999.9***********************954.4444443 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00022 DUF1943 220 lkvsgkadleplsqllpkkiklegdvkpsvsvevvatmgvdpelvqsgvkvksnlhsstplkakvkld 287 +++++ ++++ ik++++v++ v vev ++++v + + ++ vk+k + ++++++++v ++ T325744_3 53 VRIKVRLKVR---------IKVRLKVRMEVKVEVRTELKVEARMMRMEVKMKLGIEVEVEIRMEVMVE 111 4444555555.........8999999999999999999999999999999998888888888888776 PP >> DUF1997 Protein of unknown function (DUF1997) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 8.3 0.0016 13 42 134 .. 35 124 .. 10 128 .. 0.59 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0016 DUF1997 42 levePvvdlrvepeeegvvrlestdcelkgleaveendrfsldlkgaleleeegsrtelegdldlsvsvelppflallPesllestgnsvlkq 134 ++v+ v ++v++e +vr++ +++++ +++ + +++++ +l++e + + ++e++++l ++ve+ ++++ e++++++ v++ T325744_3 35 VKVKVEVRMEVKAEVRMKVRIKV-RLKVRIKVRLKVRMEVKVEVRTELKVEAR--MMRMEVKMKLGIEVEVEIRMEVMVEEMVKMVKTLVMAM 124 23333333333333334444444.33333333331133455555555555555..57777777777777777778889999999998888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 10209.88 // Query: T015427_1 [L=2656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.68 # Mc/sec: 11174.07 // Query: T015427_2 [L=2656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.62 # Mc/sec: 12255.43 // Query: T015427_3 [L=2655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.69 # Mc/sec: 11007.98 // Query: T255912_1 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.66 # Mc/sec: 3233.60 // Query: T255912_2 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 3334.65 // Query: T255912_3 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0097 16.0 4.3 12 6.1 0.0 7.1 8 GABP-alpha GA-binding protein alpha chain Domain annotation for each model (and alignments): >> GABP-alpha GA-binding protein alpha chain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.24 3.9e+03 49 66 .. 129 146 .. 123 158 .. 0.82 2 ? -0.9 0.0 0.11 1.7e+03 48 66 .. 160 178 .. 149 188 .. 0.82 3 ? 0.2 0.0 0.048 7.8e+02 48 66 .. 224 242 .. 216 248 .. 0.82 4 ! 6.1 0.0 0.00072 12 48 76 .. 320 346 .. 313 357 .. 0.78 5 ? -2.1 0.0 0.25 4.1e+03 49 64 .. 353 368 .. 346 369 .. 0.86 6 ? -2.2 0.0 0.28 4.6e+03 49 64 .. 417 432 .. 412 433 .. 0.86 7 ? 0.9 0.0 0.029 4.7e+02 44 66 .. 572 594 .. 566 598 .. 0.81 8 ? -0.0 0.1 0.057 9.3e+02 48 66 .. 704 722 .. 695 730 .. 0.83 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.24 GABP-alpha 49 eqcvkgeGlvqinvqvks 66 + cv G +q+ v ++s T255912_3 129 DPCVYHIGYMQLHVYITS 146 779999******999987 PP == domain 2 score: -0.9 bits; conditional E-value: 0.11 GABP-alpha 48 veqcvkgeGlvqinvqvks 66 + cv G +qi v ++s T255912_3 160 ADPCVYHIGYMQIRVYITS 178 578************9987 PP == domain 3 score: 0.2 bits; conditional E-value: 0.048 GABP-alpha 48 veqcvkgeGlvqinvqvks 66 + cv+ G +qi v ++s T255912_3 224 ADPCVNHIGYMQIRVYITS 242 688************9987 PP == domain 4 score: 6.1 bits; conditional E-value: 0.00072 GABP-alpha 48 veqcvkgeGlvqinvqvkseleskkrinI 76 +qcv G +qi+v ++s + + + I T255912_3 320 ADQCVYHIGYMQISVYITSVT--CRSVCI 346 69**************99843..344555 PP == domain 5 score: -2.1 bits; conditional E-value: 0.25 GABP-alpha 49 eqcvkgeGlvqinvqv 64 + cv+ G +qi v + T255912_3 353 DPCVNHIGYMQIRVYI 368 67**********9977 PP == domain 6 score: -2.2 bits; conditional E-value: 0.28 GABP-alpha 49 eqcvkgeGlvqinvqv 64 + cv+ G +qi v + T255912_3 417 DPCVNHIGYMQIRVYI 432 67**********9977 PP == domain 7 score: 0.9 bits; conditional E-value: 0.029 GABP-alpha 44 dksLveqcvkgeGlvqinvqvks 66 ++ + cv +G +qi v ++s T255912_3 572 HRLHADPCVPHTGYMQIRVYITS 594 5555789************9986 PP == domain 8 score: -0.0 bits; conditional E-value: 0.057 GABP-alpha 48 veqcvkgeGlvqinvqvks 66 + cv+ G +qi v ++s T255912_3 704 ADPCVNHIGYMQICVYITS 722 688************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 3283.35 // Query: T337379_1 [L=2647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-09 37.7 0.0 2.1e-09 37.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 0.0 1.3e-13 2.1e-09 159 222 .] 2050 2130 .. 2030 2130 .. 0.87 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.3e-13 ...TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 159 kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++v+l+++aDD++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T337379_1 2050 EEVKLSLFADDMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSElpvtiASKRIKYLGIQL 2130 689***************6677***************************99999888776661166778*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.61 # Mc/sec: 12414.13 // Query: T337379_2 [L=2647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-37 128.5 0.8 3.8e-37 127.8 0.8 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 127.8 0.8 2.3e-41 3.8e-37 1 158 [. 1874 2040 .. 1874 2054 .. 0.96 Alignments for each domain: == domain 1 score: 127.8 bits; conditional E-value: 2.3e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++ +gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l T337379_2 1874 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDKVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFML 1971 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 ++l++++++ + +++i++++ ++++ + +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ T337379_2 1972 KTLNKLGIDGMYLKIIRAIYDKPTADIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEK 2040 ********************************99********************************964 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 638 (0.0391267); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.64 # Mc/sec: 11832.21 // Query: T337379_3 [L=2647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00012 21.5 0.0 0.00026 20.4 0.0 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 1.6e-08 0.00026 1 19 [] 2597 2615 .. 2597 2615 .. 0.97 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 1.6e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+ M+LE+IILS+ sQ T337379_3 2597 SFVGTRMKLETIILSKLSQ 2615 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.65 # Mc/sec: 11650.18 // Query: T021194_1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 9.9 4.7 5.9 13 4.3 5.9 1.0 1 DUF4551 Protein of unknown function (DUF4551) Domain annotation for each model (and alignments): >> DUF4551 Protein of unknown function (DUF4551) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 5.9 0.00081 13 106 230 .. 285 405 .. 270 434 .. 0.74 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.00081 DUF4551 106 selllskdkkselfkvspskasekksrressgaakkssslnessldakekeektvskksqlslslselrklseeekeelesekalkslrsasrplPesl. 204 s + ls+ + s l++ s + + ++++ + ss+a++ +s ++s +a++ ++ + +s++++++s +ls + + +++ + + +sa+ p+P s T021194_1 285 SPECLSRSRSSVLPRSSAAPHPSSAAPHPSSAAPRLNSAAPHPSSAARRLNNAAPLPSSAVPHPSSAALHLSSTAPHPNRPSSLASPHPSARSPVPPSAh 384 5566777778888888888888899999999999999999999999999999999999999**9999999999998888888777779999999996662 PP DUF4551 205 lsrapkppsspkeppssslskderds 230 +++++p ++s++ d+r++ T021194_1 385 PLSSARRP-----SRSKPWACDQRRT 405 22222222.....2222223333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.57 # Mc/sec: 2737.52 // Query: T021194_2 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 2830.18 // Query: T021194_3 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.59 # Mc/sec: 2686.27 // Query: T034769_1 [L=754] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-06 26.6 0.4 5.9e-06 26.0 0.4 1.2 1 V1R Vomeronasal organ pheromone receptor family, V1R Domain annotation for each model (and alignments): >> V1R Vomeronasal organ pheromone receptor family, V1R # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 0.4 3.6e-10 5.9e-06 159 209 .. 124 174 .. 122 178 .. 0.88 Alignments for each domain: == domain 1 score: 26.0 bits; conditional E-value: 3.6e-10 V1R 159 lislmvlssgymvallcrhkk..qarhlrstslsskaspeqratrsillltsl 209 ++ +m lss y v ll+rh + q lr+ts s++aspe+ra ++ l l+ l T034769_1 124 VVGIMLLSSMYTVILLFRHER*yQ--SLRNTSRSPRASPEKRAMQTSLCLLEL 174 6789***************86634..6******************99988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (754 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 3921.94 // Query: T034769_2 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-08 34.5 1.0 2.4e-08 33.8 1.0 1.2 1 V1R Vomeronasal organ pheromone receptor family, V Domain annotation for each model (and alignments): >> V1R Vomeronasal organ pheromone receptor family, V1R # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 1.0 1.5e-12 2.4e-08 36 79 .. 77 120 .. 61 131 .. 0.87 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 1.5e-12 V1R 36 tfiswrrwddiicksllylyrllrglalsascllsvlqaiilss 79 +f s + w+d c++l+ + r++rgla++++clls+lqai++s+ T034769_2 77 VFESLNFWKDFKCQALFSMNRVMRGLAITTTCLLSMLQAITISP 120 5778899***********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.66 # Mc/sec: 3263.95 // Query: T034769_3 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.65 # Mc/sec: 3314.16 // Query: T159329_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5525.64 // Query: T159329_2 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.59 # Mc/sec: 5057.37 // Query: T159329_3 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 4590.53 // Query: T242256_1 [L=2314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.57 # Mc/sec: 11413.73 // Query: T242256_2 [L=2314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.91 # Mc/sec: 7274.68 // Query: T242256_3 [L=2314] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2314 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.65 # Mc/sec: 10184.55 // Query: T156233_1 [L=3729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.70 # Mc/sec: 15240.05 // Query: T156233_2 [L=3729] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3729 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.74 # Mc/sec: 14416.26 // Query: T156233_3 [L=3728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 16159.35 // Query: T126062_1 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-07 29.9 0.6 4.6e-07 28.9 0.6 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.6 2.8e-11 4.6e-07 4 48 .. 150 193 .. 147 195 .. 0.93 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 2.8e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 v w+dl +++W +++++gr ++cv P ++++++w+P R ++ T126062_1 150 LVWWRDLITKSWET-GKIITWGRSYACVSPGQNQQLIWIPSRHLK 193 699*********95.89*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3668.89 // Query: T126062_2 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-06 28.0 1.5 2.6e-06 27.3 1.5 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 0.00016 21.3 0.0 0.00029 20.5 0.0 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 1.5 3.2e-10 2.6e-06 23 87 .] 230 294 .. 224 294 .. 0.93 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 3.2e-10 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t +++pptw q+kkl+q+a l + t +++a + +++ v+ + ++ +++y+a T126062_2 230 NTCRTQPPTWGQIKKLSQMAEENLRKAGQPVTMSNFMVAMIAVITTAVSIPSTRADTQNNYTYWA 294 577899******************99999999999999999999999***999999********7 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 3.5e-08 0.00029 130 165 .. 355 390 .. 351 393 .. 0.95 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 3.5e-08 HERV-K_env_2 130 eecvansavilqnnefgtiidwaprgqfyhncsgqt 165 e+c+a+ a +l+n+ +g ++w+p+g f nc+ q T126062_2 355 EDCIAEQAEVLRNDSYGITVNWSPKGMFSLNCTSQP 390 79******************************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 3668.89 // Query: T126062_3 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.61 # Mc/sec: 3423.62 // Query: T302115_1 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1141 (0.0699742); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.42s 00:00:01.94 Elapsed: 00:00:00.76 # Mc/sec: 6862.23 // Query: T302115_2 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 714 (0.0437876); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.64 # Mc/sec: 8148.90 // Query: T302115_3 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1053 (0.0645775); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.37s 00:00:01.79 Elapsed: 00:00:00.66 # Mc/sec: 7897.62 // Query: T053003_1 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 9231.68 // Query: T053003_2 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 8889.76 // Query: T053003_3 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.51 # Mc/sec: 9412.69 // Query: T261075_1 [L=1778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.48 # Mc/sec: 10596.99 // Query: T261075_2 [L=1778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48 # Mc/sec: 10596.99 // Query: T261075_3 [L=1777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-28 100.3 0.3 3.2e-28 98.6 0.2 1.7 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.12 1.9e+03 159 183 .. 1409 1434 .. 1371 1445 .. 0.65 2 ! 98.6 0.2 2e-32 3.2e-28 47 209 .. 1582 1760 .. 1576 1773 .. 0.91 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.12 ...TEEECTTEEEEEESSHHH.HHHH CS RVT_1 159 kgvtllrYaDDililskskee.lqel 183 + ++++ D +l++++++++ +q+ T261075_3 1409 CCCCCCCFGDRVLLYCTGRSAvMQSQ 1434 66899*************99864433 PP == domain 2 score: 98.6 bits; conditional E-value: 2e-32 HH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHH CS RVT_1 47 pgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSP 140 +g+ + +++ ++++++++ k k+++++++D +k d+++ + l++l++++++ + ++++++++ ++++++ +n+++ e ++ k+g++qG++lSP T261075_3 1582 QGERIFKNIgcsiNVIQHINRTKDKNHMIISIDAEKTLDKIQQCFMLKTLNKLGTDGMYLKIVRAVYDKPTANIILNWQKLESLPLKTGTRQGCPLSP 1679 55566666777778999999999999*****************************************************99***************** PP HHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE..... CS RVT_1 141 llfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlf..s 209 llfn++++ l r +r++ ++ +l+++a D++++ ++ ++q+ll+ + ++ k sg+kin +K++++l+ + T261075_3 1680 LLFNIVLEVLARAIRQEKeikgiqlgkEEAKLSLFAHDMIVYLENpIVSAQNLLKLIGNFSKVSGYKINLQKSQAFLYinN 1760 ****************99***************************6677***************************87531 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.50 # Mc/sec: 10167.39 // Query: T239484_1 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-52 176.2 1.8 1.2e-51 175.2 1.8 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0032 17.0 0.3 0.0071 15.8 0.3 1.5 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.24 11.7 8.8 0.43 10.9 0.0 3.3 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.2 1.8 2.2e-55 1.2e-51 1 222 [] 276 532 .. 276 532 .. 0.95 Alignments for each domain: == domain 1 score: 175.2 bits; conditional E-value: 2.2e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l++ T239484_1 276 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKT 375 899999999999***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelq 181 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ ++q T239484_1 376 LNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpMVSAQ 475 ******************************99*********************************99***************************6666** PP HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 182 elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239484_1 476 NLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 532 *************************99999988877761156678*********986 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.3 1.3e-06 0.0071 47 111 .. 601 670 .. 590 673 .. 0.78 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.3e-06 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239484_1 601 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 670 5678888985444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.1 1.5 3 1.6e+04 11 20 .. 645 654 .. 643 661 .. 0.72 2 ? 10.9 0.0 7.9e-05 0.43 3 30 .. 712 739 .. 710 741 .. 0.90 3 ? 5.1 0.3 0.0053 29 23 50 .. 808 835 .. 802 837 .. 0.86 Alignments for each domain: == domain 1 score: -4.1 bits; conditional E-value: 3 YlbE 11 pyWYrkLnRn 20 +WY + nR+ T239484_1 645 TAWYWYQNRD 654 5788888887 PP == domain 2 score: 10.9 bits; conditional E-value: 7.9e-05 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239484_1 712 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 739 677999*******************985 PP == domain 3 score: 5.1 bits; conditional E-value: 0.0053 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239484_1 808 LISRIYNELKQIYKKKTNNHIKKWAKDM 835 5778889***************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 770 (0.0472219); expected 326.1 (0.02) Passed bias filter: 352 (0.0215871); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.47 # Mc/sec: 5739.92 // Query: T239484_2 [L=943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 5620.34 // Query: T239484_3 [L=942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 5389.80 // Query: T040694_1 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 4840.06 // Query: T040694_2 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 4940.89 // Query: T040694_3 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 4834.22 // Query: T353281_1 [L=2929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 15235.22 // Query: T353281_2 [L=2929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 15517.35 // Query: T353281_3 [L=2929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.26s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 11801.93 // Query: T123518_1 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.51 # Mc/sec: 10371.91 // Query: T123518_2 [L=1848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.51 # Mc/sec: 10366.30 // Query: T123518_3 [L=1848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 9975.12 // Query: T215541_1 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-07 28.6 0.9 1.6e-06 27.5 0.9 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.9 9.8e-11 1.6e-06 1 16 [. 2121 2136 .. 2121 2138 .. 0.95 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 9.8e-11 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+WM+LE+IILS+ T215541_1 2121 SFAGTWMKLETIILSK 2136 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 15395.50 // Query: T215541_2 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 7.5 8.7 6.2 6.4 8.7 1.5 1 IncA IncA protein Domain annotation for each model (and alignments): >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 8.7 0.00038 6.2 95 177 .. 1188 1264 .. 1182 1315 .. 0.76 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.00038 IncA 95 eeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakeirelrelsdlkeevqelrselerlqedlqrlq 177 ++ q+++++++l+++lk+le++++ ++ + s ++++ +++ ++ke++ ++l++++++++ + e+ +r+ l+rl T215541_2 1188 HKRKQERTKINTLTSQLKELEKQEQTNS--KASRKQEITKIRAELKEIETQ-KTLQKINESRSGFFEKINKTDRS---LARLT 1264 78999***********************..999999999999999988766.44443444444433333333333...33333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1081 (0.0662946); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 14585.21 // Query: T215541_3 [L=2906] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-117 391.6 11.5 5e-117 390.7 11.5 1.4 1 Transposase_22 L1 transposable element 3.8e-42 144.2 1.2 6.6e-42 143.4 1.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 0.00044 20.3 0.1 0.002 18.3 0.0 1.9 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 390.7 11.5 9.1e-121 5e-117 138 368 .] 626 858 .. 576 858 .. 0.92 Alignments for each domain: == domain 1 score: 390.7 bits; conditional E-value: 9.1e-121 ..XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE CS Transposase_22 138 daslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq 232 +s++s+ d++e+rvs ++d+i+ei+ e k+rekr+k++eqslq+iqd+vkrPnl liG++es+ e+++klen+l++ii+enfPnl++++n++iq T215541_3 626 CTSFNSQFDQVEQRVSVIDDQINEIKGEEKFREKRVKRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLQDIIQENFPNLARQVNIQIQ 720 46999****************************************************************************************** PP EEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 233 eiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGe 327 ei+rtP+r++ +ra+srhii+r+tkv++k+k+l+ +rekGrvt kGkPirlt dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Ge T215541_3 721 EIQRTPQRYSLRRAASRHIIIRFTKVEMKEKMLRPAREKGRVTHKGKPIRLTGDLSAETLQARREWGPIFNILKEKNFQPRITYPAKLSFISEGE 815 *********************************************************************************************** PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f dk++lrd+++trP+l++llke ++er+++yq+l++++ T215541_3 816 IKSFTDKQMLRDFVTTRPTLQELLKEalNMERNNQYQPLQNHA 858 *****************************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.4 1.2 1.2e-45 6.6e-42 5 209 .. 1410 1634 .. 1406 1661 .. 0.91 Alignments for each domain: == domain 1 score: 143.4 bits; conditional E-value: 1.2e-45 T.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 5 gpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 + +++Rpisl++vd+k++nk++a++++++++kl+ ++ + f pg + + ++ + ++++++ + k+++++++ +kaF++++ + ++l +++++ T215541_3 1410 T-ENFRPISLMNVDVKIINKILANQIQQHIKKLILHDKVSFIPGMQGWFNIcksiNIIHHINRTNDKNHVIISIGAEKAFNKIQQCFMPKTLSKLGID 1506 3.79**************************************************99999999999999****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHH CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqellea 186 +++i++++ ++++++ ++g++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ T215541_3 1507 GAYLKIIRAIFDKPTANIILSGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiq*gkEEVKLSLFADDMMVYLENpIVSAQNLLKL 1604 ***********************99*********************************99***************************6677******* PP HHHHHHHTT--BEGGG-EEE.......... CS RVT_1 187 veewlkesglkinpeKtklvlf.......s 209 ++++ k sg+kin +K++++l+ + T215541_3 1605 ISNFSKVSGYKINVQKSQAFLYtnkqtnrE 1634 ********************9855554440 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.46 2.5e+03 12 51 .. 662 716 .. 628 838 .. 0.62 2 ! 18.3 0.0 3.6e-07 0.002 6 87 .. 898 1043 .. 893 1132 .. 0.80 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.46 HHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...............E CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x RF Exo_endo_phos 12 aeksrrsaaladllkaydadvlglqEvdddelsrlplla...............d 51 ++++++ ++++d +k+ + ++g+ E d++++++l+ + + T215541_3 662 KRNEQSLQEIQDYVKRPNLHLIGIPESDGENGTKLENTLqdiiqenfpnlarqvN 716 3444455555555555566788877777666666655555444444444444441 PP == domain 2 score: 18.3 bits; conditional E-value: 3.6e-07 STCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........EEEEEEESSSTTSSEEEEEECSEEEEE........... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF Exo_endo_phos 6 ngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...........dadaskfgtgkgqggvavlsrfpltsl........... 77 ng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + +k++ gv++l++ + + + T215541_3 898 NG----LNARIKRHRLANWIKSQDPLVCCIQETHLMCRDTHRLKIkgwreiyqan*K--------QKKKAGVVILVSDETDFKptkdqkrqgrp 979 45....555677899*****************9999887777777877777777773........56678888888888866667788888888 PP ...........................................EEEEEE-SS...........- CS ...........................................xxxxxxxxx...........x RF Exo_endo_phos 78 ...........................................vivlGDfNa...........r 87 i++GDfN+ r T215541_3 980 lrngkeinatrranypkyicnntgaprfiqqvlrdlqrdldshTIIMGDFNThcqy*td*qdrR 1043 8888888888888999999999999999999999999999999********9555555555552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2906 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.02u 0.26s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 14585.21 // Query: T022853_1 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 746 (0.04575); expected 326.1 (0.02) Passed bias filter: 197 (0.0120814); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 6029.75 // Query: T022853_2 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 6147.98 // Query: T022853_3 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 937 (0.0574635); expected 326.1 (0.02) Passed bias filter: 507 (0.0310928); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 5910.58 // Query: T051688_1 [L=1836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 9910.35 // Query: T051688_2 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 9904.95 // Query: T051688_3 [L=1835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 9904.95 // Query: T198117_1 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2179.95 // Query: T198117_2 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2270.78 // Query: T198117_3 [L=381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 2270.78 // Query: T095115_1 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-27 94.8 2.2 7.8e-27 94.0 2.2 1.4 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.0 2.2 4.8e-31 7.8e-27 191 285 .. 745 838 .. 744 843 .. 0.96 Alignments for each domain: == domain 1 score: 94.0 bits; conditional E-value: 4.8e-31 EEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE CS Transposase_22 191 nlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirlta 285 nlr+i v+ + +e+ + leni+ iieenfP l ++++++i+e++rtP kr+s+ hi++r++kv++k+ il +vr+k +vt+k kPirlt T095115_1 745 NLRIIVVPVE-EEKSRSLENIFGGIIEENFPSLVRDLDIQIKEAQRTPGELIAKRSSPMHIVIRLSKVKMKEIILGTVRQKHQVTYKEKPIRLTQ 838 9****99975.57889*****************************************************************************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 363 (0.0222617); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 13064.46 // Query: T095115_2 [L=2466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 601 (0.0368576); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 12597.87 // Query: T095115_3 [L=2465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-31 108.2 0.8 6.5e-31 107.4 0.2 1.6 2 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 8.9e-17 60.8 0.0 1.6e-16 60.0 0.0 1.3 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.057 13.0 0.1 0.18 11.4 0.1 1.9 1 DUF1725 Protein of unknown function (DUF1725) 0.7 9.9 3.1 1.9 8.4 3.1 1.7 1 DUF3709 Protein of unknown function (DUF3709) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 0.79 3.2e+03 55 77 .. 996 1021 .. 959 1022 .. 0.79 2 ! 107.4 0.2 1.6e-34 6.5e-31 30 200 .. 1494 1678 .. 1493 1692 .. 0.96 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.79 ..........HCCHTS--EEEEEEBC CS RVT_1 55 v...eellkalkkkkkaklllklDlk 77 + +++ ++lk k+++++++++D++ T095115_3 996 TyltHKYSHKLKVKGGKRHFMQMDIQ 1021 234577888889999*********97 PP == domain 2 score: 107.4 bits; conditional E-value: 1.6e-34 ........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET......................... CS RVT_1 30 Lkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngees 123 ++++++k+++++q+gf pg + + ++ ++++++++ k+k+++++++D +k Fd +++++ +++l +++++ + +n+ik+++ ++++s+ +n e+ T095115_3 1494 IQQHIRKIIHHDQVGFIPGMQGWFNIhksiNVIHHINRIKNKSHMIISIDAEKPFDGIQHRFMIKTLSKIGIQGTYLNVIKTIYDKPRASIILNVEKL 1591 67899999*********************99999999999999*****************************************************99 PP TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 124 egryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkinp 200 +++ +g++qG++lSPllfn++++ l r +rk+ ++v+l+++aD +++++++ k++ +lle ++ + k s++kin+ T095115_3 1592 KELLLRTGTRQGWPLSPLLFNIVLEVLARAIRKEKemkgiqiskEEVKLSLFADEMIVYFENlKDSSRKLLELIKGFSKVSEYKINE 1678 *********************************99***************************666699*****************96 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.0 0.0 3.9e-20 1.6e-16 291 353 .. 843 905 .. 816 920 .. 0.87 Alignments for each domain: == domain 1 score: 60.0 bits; conditional E-value: 3.9e-20 HHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT CS Transposase_22 291 tlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke 353 tl+arr+w++++ lk+ ++qP +ly aklsii +G ++ f dk++lr + +t+ l++l k T095115_3 843 TLQARRDWGPIFSFLKQDNYQPSILYLAKLSIIYEGKLQSFSDKQMLRYFTTTKLPLQELPKG 905 8*********************************************************99775 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.1 4.4e-05 0.18 2 19 .] 2195 2212 .. 2194 2212 .. 0.86 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 4.4e-05 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa WM L +IILSEi+Q T095115_3 2195 FAVNWMRLGTIILSEITQ 2212 666699999********9 PP >> DUF3709 Protein of unknown function (DUF3709) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 3.1 0.00047 1.9 11 27 .. 2402 2418 .. 2398 2420 .. 0.92 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00047 DUF3709 11 CRfKFQhyCLIELlrlC 27 C + F +CLIEL+ C T095115_3 2402 CNYQFISFCLIELSSFC 2418 999************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.74 # Mc/sec: 9529.66 // Query: T163127_1 [L=3278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.61 # Mc/sec: 15373.44 // Query: T163127_2 [L=3278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.79 # Mc/sec: 11870.63 // Query: T163127_3 [L=3277] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-99 332.5 11.3 2.4e-99 332.5 11.3 1.7 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 1.5 0.37 6e+03 82 145 .. 1198 1259 .. 1192 1259 .. 0.73 2 ! 332.5 11.3 1.5e-103 2.4e-99 179 368 .] 2819 3010 .. 2810 3010 .. 0.98 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 0.37 XXXXX..................XXXXXXXXXXXXXXXXX..................XXHHHH CS Transposase_22 82 ekqlkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssri 145 + k k+ + sk+ m+m ++ + k k +++ q ++t+ + r i s ++r+ T163127_3 1198 DPIKKWTKDMNRHFSKEDMHMANKHM--KKKSLIIREMQMKTTMRYHLTPVRMVIIKKSKNNRC 1259 44445556777888999999987765..566677999999999998888888888888888887 PP == domain 2 score: 332.5 bits; conditional E-value: 1.5e-103 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 +lq+i+d+vkr nl liGv+es+ e+++klenil++ii+enfPnl+++an++iqei+r P+r++s+ra++rhii+r+tkv++k+k+l+a+rek T163127_3 2819 KLQQIWDYVKRRNLHLIGVPESDGENGTKLENILQDIIQENFPNLERQANIQIQEIQRMPQRYSSRRATPRHIIIRFTKVEMKEKMLRAAREK 2911 69******************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 rvt k kPirltadlsaetl+arrew + ++ilkek+fqPr++yPakls+i++Geik f dk++lrd+++trPal++llke ++er++ryq T163127_3 2912 RRVTHKAKPIRLTADLSAETLQARREWEPTFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQELLKEalNMERNNRYQ 3004 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 +l++++ T163127_3 3005 PLQKHA 3010 ***996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3277 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.69 # Mc/sec: 13586.87 // Query: T040786_1 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.39 11.0 9.7 0.69 10.2 9.7 1.4 1 CENP-B_dimeris Centromere protein B dimerisation domain 1.5 8.8 12.9 2.1 8.4 12.9 1.1 1 DUF262 Protein of unknown function DUF262 4.2 7.7 55.0 5.8 7.3 55.0 1.1 1 Nop25 Nucleolar protein 12 (25kDa) 5.6 6.3 30.2 7.3 6.0 30.2 1.0 1 AAA_15 AAA ATPase domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 9.7 0.00017 0.69 12 38 .. 97 122 .. 87 148 .. 0.51 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00017 CENP-B_dimeris 12 sesesdeeeeeeeedeededeeddedd 38 e e +eeeeeeee+ee+e+ee++e+d T040786_1 97 EE-EEEEEEEEEEEEEEEEEEEEEEED 122 22.222222222222222222222222 PP >> DUF262 Protein of unknown function DUF262 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 12.9 0.00051 2.1 86 162 .. 41 129 .. 6 175 .. 0.47 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00051 DUF262 86 iknleaeiek............ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikaye 162 k ++ +k +k ee+++++k + ++++ke+ +++ +++k ++ee+ee++e+ + ++++ ++ee+++ee++ + T040786_1 41 KKGRRKKKKKkekekkgrrkkkKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEDRRGGRPN 129 11111111111111233333333334444444444444444444444444444444433333333333333444444444444444444 PP >> Nop25 Nucleolar protein 12 (25kDa) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 55.0 0.0014 5.8 25 123 .. 26 121 .. 24 139 .. 0.69 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0014 Nop25 25 GFhKRKlqRqkkAqeeakeqereerieeRkklreerkkeleeqleevkealkeseeeeeeeeeeeeeeeekeeeeeeeewegfeddeeeeeeddeeeyi 123 GF RK+ ++kk +e+ ++++++++e+ kk r+++kk+ ee+ +++k++ k++++e+e++++++++++e+eeeeeeee e e eeeee++eee++ T040786_1 26 GFLMRKKRKKKKEKEKKGRRKKKKKKEKEKKGRRKKKKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEEEEEEEEEE---EEEEEEEEEEEE 121 9************************************************99996555555443333332222222222222222...222222222222 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 30.2 0.0018 7.3 82 180 .. 12 117 .. 3 132 .. 0.55 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0018 AAA_15 82 vef...........liefeyleikkkilklksk.kkskeyestlkskgkkkadlllekkekelkkllkdkklklkkneysdekisvekkkskkeleeeke 169 ++f ++ ++ ++kkk++++k kk+k+ +k+kk+++ +k e+++kk++k+ k+k k++e+ ++k++ +k+++++e eee+e T040786_1 12 YCFqlqgv*qv*mfGFLMRKKRKKKKEKEKKGRrKKKKKK-----EKEKKGRRKKKKKREEKKKKMKKKGKKKKKEKEKRKKKKKKKKEEEEEEEEEEEE 106 5555666666665544444455555555555544333333.....3333344433455667777777777777776666666666555555555555555 PP AAA_15 170 eklekekaeik 180 e++e+e++e + T040786_1 107 EEEEEEEEEEE 117 55554444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 3035 (0.186128); expected 326.1 (0.02) Passed bias filter: 1113 (0.0682571); expected 326.1 (0.02) Passed Vit filter: 722 (0.0442782); expected 16.3 (0.001) Passed Fwd filter: 210 (0.0128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 2.75u 0.44s 00:00:03.19 Elapsed: 00:00:01.05 # Mc/sec: 1558.47 // Query: T040786_2 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.026 14.2 1.3 0.044 13.4 1.3 1.3 1 Connexin Connexin 1.5 8.5 7.5 1.9 8.1 7.5 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> Connexin Connexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 1.3 5.4e-06 0.044 106 139 .. 89 122 .. 75 204 .. 0.55 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.4e-06 Connexin 106 ekekkkekkekkeeekkkkkekkkkekeeskkrr 139 +++++++kk+kk+++kkkkk+kkkk+k+++kk++ T040786_2 89 RRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKT 122 1111111111112222222222222222222222 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 7.5 0.00023 1.9 120 151 .. 91 123 .. 43 148 .. 0.48 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00023 RR_TM4-6 120 ekeekeke.keeakkeseeeeeekkkkkkaksk 151 +++k+k+ k+++kk++++++++kkkkkk+k+ T040786_2 91 RRRRKKKKkKKKKKKKKKKKKKKKKKKKKKKTG 123 111111110111111111112222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2027 (0.12431); expected 326.1 (0.02) Passed bias filter: 723 (0.0443395); expected 326.1 (0.02) Passed Vit filter: 257 (0.0157611); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.29u 0.51s 00:00:01.80 Elapsed: 00:00:00.86 # Mc/sec: 1902.78 // Query: T040786_3 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.002 17.5 17.6 0.0029 16.9 17.6 1.3 1 DUF1510 Protein of unknown function (DUF1510) 0.0063 16.2 2.6 0.0086 15.8 2.6 1.1 1 SpoIIIAH SpoIIIAH-like protein 0.0071 14.6 33.7 0.0095 14.2 33.7 1.0 1 CDC45 CDC45-like protein ------ inclusion threshold ------ 0.29 9.2 30.2 0.38 8.8 30.2 1.0 1 Nop14 Nop14-like family 0.56 8.7 33.1 0.71 8.4 33.1 1.1 1 TT_ORF1 TT viral orf 1 0.77 8.3 35.5 1 7.9 35.5 1.0 1 MIP-T3 Microtubule-binding protein MIP-T3 2.9 7.0 28.0 4.9 6.2 28.0 1.3 1 BUD22 BUD22 5.5 5.6 9.3 7.3 5.2 9.3 1.0 1 Apt1 Golgi-body localisation protein domain 5.6 6.2 33.6 8 5.7 33.6 1.1 1 SDA1 SDA1 Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 17.6 1.6e-06 0.0029 51 115 .. 30 94 .. 4 116 .. 0.46 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 1.6e-06 DUF1510 51 eeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevtee 115 eee+eee + e+ e++ee+ee e ee ++eeee+k eeee ++e +ee+e e ++ee++e++e+ T040786_3 30 EEEEEEEGEGEEGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEG 94 22233333333333333333333333333333333333333333333333333333333333332 PP >> SpoIIIAH SpoIIIAH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 2.6 4.7e-06 0.0086 18 86 .. 25 92 .. 18 156 .. 0.66 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 4.7e-06 XXXXXXXX..XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS SpoIIIAH 18 Ylnftedsgkkaaetagteeeesekaeigd.dkeeaessaasaeaesesetesesaekediassdedeed 86 ++ + e++ +++e +g+e+e++e++e g+ +++e+e+++++ +e+e e+e+e++e+++ ++++e+ee+ T040786_3 25 WFPYEEEE--EEEEGEGEEGEKEEEEEEGEgEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEE 92 55566665..444444444444444444443355555556666666666666666666666666665554 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 33.7 5.2e-06 0.0095 125 210 .. 30 120 .. 20 139 .. 0.39 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 5.2e-06 CDC45 125 aleeeeesdedd.....eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrsepsakklrrrlkkerrky 210 + eeeee + ++ eeee + +e eeeeeee+++eeeedeee +++++ + +eeeeee+ee r+r+rrr+++++++ rrr++++rr+ T040786_3 30 EEEEEEEGEGEEgekeeEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRR 120 3333333332223322133333334444444444444444444443334333333333333333333333333312222222222222221 PP >> Nop14 Nop14-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 30.2 0.00021 0.38 345 420 .. 30 105 .. 14 132 .. 0.31 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00021 Nop14 345 eeeeededdfeedddlveseseeee.eeeeedeeeeedeeeee.eeeededdlsdleseeeeeedeleeelleeekka 420 eeeee+e + ee + +e+e+ee e ee ee+eeee+ eeee eee +e+++ + e+eeeeee+e ++ +++++ T040786_3 30 EEEEEEEGEGEEGE--KEEEEEEGEgEEGEEEEEEEKRREEEEdEEEGEEEEEGEGEEEEEEEEEEGRRRRRRRRRRR 105 22222222222222..22222222212222222222222222202222222222222223333333222221111111 PP >> TT_ORF1 TT viral orf 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 33.1 0.00039 0.71 25 62 .. 95 131 .. 65 134 .. 0.62 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00039 TT_ORF1 25 rrrrrrrrvRRRrrgrrrrrrrrrrrrrrrrkrkklil 62 rrrrrrrr RRRrr+rrrrrrrrrrrrr r + +l++ T040786_3 95 RRRRRRRR-RRRRRRRRRRRRRRRRRRRQARGKTQLSI 131 22222222.22222333333455555555666666666 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 35.5 0.00056 1 100 190 .. 31 122 .. 8 132 .. 0.36 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS MIP-T3 100 eeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekeke.kekkkkkekdrekekererekaserekkekkkkdsknk 190 ee++++g++ee +ke+++ee + +e +e e+e++r+++ee +e+ +++e+++ +e ++++e+ r + ++r r + + r ++++++ ++ + T040786_3 31 EEEEEEGEGEEGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEGEEEEEGEGeEEEEEEEEEGRRRRRRRRRRRRRRRRRRRRRRRRRRRQ 122 33333333333333333233222222222323333333333222222222222122222222222222222222222222222222122222 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 28.0 0.0027 4.9 172 252 .. 32 102 .. 18 132 .. 0.25 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0027 BUD22 172 eeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyneetdeesseesdssdsse 252 eee+e++ + e e++e++ee e e+ ++e++ee+ ++ee++e+e ++e+e+e +ee++ee++e +++ +++ T040786_3 32 EEEEEGEGE-EGEKEEEEEEGEGEEGEEEEEEEKRREEEEDEEEG---------EEEEEGEGEEEEEEEEEEGRRRRRRRR 102 111111111.11111111111111111111111111111111111.........111111111111111111111111111 PP >> Apt1 Golgi-body localisation protein domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 9.3 0.004 7.3 296 384 .. 26 114 .. 23 160 .. 0.37 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.004 Apt1 296 FPkeesdaqea.........smvkess.........seeddesdeesessssssl.........ssssssassssssssrssslelrlkpsstsssssse 368 FP ee++++e+ + ++ + ++++ ++++++++ + +++++++ +e r +++ T040786_3 26 FPYEEEEEEEEgegeegekeE----EEeegegeegeE------------EEEE-EkrreeeedeEEGEEEEEGEGEEEEEEEEEEGR--------RRRRR 100 777777777664433221110....111122211111............1111.111111111111111111111111111111111........11111 PP Apt1 369 ssssssskkrsseess 384 ++++ +++r++ T040786_3 101 RRRRRRRRRRRRR--R 114 1111111111111..0 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 33.6 0.0044 8 98 180 .. 31 111 .. 20 133 .. 0.25 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0044 SDA1 98 eddeedwevesdddseedseggwidvesdeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekekv............k 180 e++ee+ e e+ +++ee++eg+ e +ee+ee+++ e+ee +eee ee+ee e eeeee eeeee + + T040786_3 31 EEEEEEGEGEEGEKEEEEEEGEGE--EGEEEEEEEKRREEEE-DEEEGEEEEEGEGEEEEE----EEEEEGRRR-------RrrrrrrrrrrrrR 111 112222222222222222222200..1111111111111111.111111111111111111....111111111.......11111222211110 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1285 (0.0788053); expected 326.1 (0.02) Passed bias filter: 565 (0.0346498); expected 326.1 (0.02) Passed Vit filter: 279 (0.0171103); expected 16.3 (0.001) Passed Fwd filter: 89 (0.00545811); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.65 # Mc/sec: 2517.53 // Query: T327802_1 [L=3565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.71 # Mc/sec: 14364.59 // Query: T327802_2 [L=3565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.77 # Mc/sec: 13245.27 // Query: T327802_3 [L=3565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.39s 00:00:01.72 Elapsed: 00:00:00.73 # Mc/sec: 13971.04 // Query: T158664_1 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.64 # Mc/sec: 6629.08 // Query: T158664_2 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.65 # Mc/sec: 6527.09 // Query: T158664_3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.62 # Mc/sec: 6842.92 // Query: T111688_1 [L=5519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.44s 00:00:02.26 Elapsed: 00:00:00.76 # Mc/sec: 20774.90 // Query: T111688_2 [L=5519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.38s 00:00:02.11 Elapsed: 00:00:00.77 # Mc/sec: 20505.09 // Query: T111688_3 [L=5519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.37s 00:00:02.11 Elapsed: 00:00:00.82 # Mc/sec: 19254.78 // Query: T258127_1 [L=3188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:00.84 # Mc/sec: 10857.53 // Query: T258127_2 [L=3187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.73 # Mc/sec: 12489.68 // Query: T258127_3 [L=3187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.73 # Mc/sec: 12489.68 // Query: T368932_1 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 98 (0.00601006); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.61 # Mc/sec: 2068.24 // Query: T368932_2 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.55 # Mc/sec: 2293.87 // Query: T368932_3 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 2252.90 // Query: T182376_1 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 7684.63 // Query: T182376_2 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.73 # Mc/sec: 6842.48 // Query: T182376_3 [L=1746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 324 (0.01987); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.61 # Mc/sec: 8188.54 // Query: T221628_1 [L=2249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.61 # Mc/sec: 10547.55 // Query: T221628_2 [L=2249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.27s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 10377.43 // Query: T221628_3 [L=2249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2249 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.62 # Mc/sec: 10377.43 // Query: T207624_1 [L=1982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.82 # Mc/sec: 6914.84 // Query: T207624_2 [L=1982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.74 # Mc/sec: 7662.39 // Query: T207624_3 [L=1981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.74 # Mc/sec: 7658.52 // Query: T241461_1 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.68 # Mc/sec: 4034.61 // Query: T241461_2 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.70 # Mc/sec: 3919.34 // Query: T241461_3 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.62 # Mc/sec: 4425.06 // Query: T316862_1 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2426 (0.14878); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 104 (0.00637802); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.41s 00:00:02.00 Elapsed: 00:00:01.01 # Mc/sec: 2858.00 // Query: T316862_2 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2403 (0.147369); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.42s 00:00:02.19 Elapsed: 00:00:00.74 # Mc/sec: 3900.78 // Query: T316862_3 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.7 6.3 14.5 37 4.3 0.4 5.0 5 HTH_Mga M protein trans-acting positive regulator (MGA) HTH Domain annotation for each model (and alignments): >> HTH_Mga M protein trans-acting positive regulator (MGA) HTH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.1 0.14 2.4e+03 23 36 .. 94 107 .. 93 107 .. 0.90 2 ? 3.9 0.2 0.003 49 16 36 .. 134 153 .. 133 153 .. 0.90 3 ? 0.6 0.0 0.033 5.4e+02 18 36 .. 181 199 .. 178 199 .. 0.88 4 ? 3.4 0.2 0.0042 69 19 36 .. 225 242 .. 222 242 .. 0.90 5 ? 4.3 0.4 0.0023 37 16 36 .. 327 346 .. 326 360 .. 0.82 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.14 HTH_Mga 23 ldelakeLglselt 36 l +++++L+++++t T316862_3 94 LAHIKTQLHTTSKT 107 679********997 PP == domain 2 score: 3.9 bits; conditional E-value: 0.003 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316862_3 134 Q-RPKLTLTHVKTQLHTTSKT 153 5.789**************98 PP == domain 3 score: 0.6 bits; conditional E-value: 0.033 HTH_Mga 18 eksltldelakeLglselt 36 ++ lt ++++++L+++++t T316862_3 181 RPKLTFTHIKTQLRTTSKT 199 6789999**********97 PP == domain 4 score: 3.4 bits; conditional E-value: 0.0042 HTH_Mga 19 ksltldelakeLglselt 36 + ltl++++++L+++++t T316862_3 225 PKLTLTHIKTQLHTTSKT 242 679*************98 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0023 HTH_Mga 16 eneksltldelakeLglselt 36 + ++ ltl++++++L+++++t T316862_3 327 Q-RPKLTLTHIKTQLRTTSKT 346 5.789**************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2044 (0.125353); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.59u 0.47s 00:00:02.06 Elapsed: 00:00:00.80 # Mc/sec: 3608.22 // Query: T354192_1 [L=673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 3056.09 // Query: T354192_2 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3433.00 // Query: T354192_3 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.59 # Mc/sec: 3258.44 // Query: T337151_1 [L=6440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.43s 00:00:02.42 Elapsed: 00:00:00.77 # Mc/sec: 23926.94 // Query: T337151_2 [L=6440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 570 (0.0349565); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.29u 0.48s 00:00:03.77 Elapsed: 00:00:01.10 # Mc/sec: 16748.86 // Query: T337151_3 [L=6440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6440 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.37s 00:00:02.27 Elapsed: 00:00:00.96 # Mc/sec: 19191.40 // Query: T259445_1 [L=2833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-16 60.8 88.2 1.4e-06 28.6 17.5 8.0 8 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 17.5 8.7e-11 1.4e-06 2 70 .. 236 308 .. 228 309 .. 0.92 2 ! 27.7 14.5 1.7e-10 2.7e-06 2 67 .. 302 371 .. 301 388 .. 0.91 3 ! 26.3 17.9 4.6e-10 7.4e-06 2 70 .. 468 540 .. 459 541 .. 0.90 4 ! 27.9 14.3 1.4e-10 2.3e-06 2 67 .. 523 592 .. 522 607 .. 0.91 5 ? -2.4 0.3 0.4 6.6e+03 44 61 .. 843 877 .. 839 893 .. 0.64 6 ? -2.2 4.7 0.35 5.8e+03 12 58 .. 1222 1254 .. 1216 1269 .. 0.49 7 ? -1.7 0.1 0.26 4.2e+03 6 23 .. 1799 1816 .. 1788 1823 .. 0.76 8 ? -5.2 3.3 1 1.6e+04 54 54 .. 2269 2269 .. 2218 2319 .. 0.54 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 8.7e-11 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +t+ +srTpa g T259445_1 236 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGTQQ-DSRTPAPG 308 8****************98779******99889*****985567*******9*********9988.9****976 PP == domain 2 score: 27.7 bits; conditional E-value: 1.7e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259445_1 302 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 371 8***************997669******99889*****985557*******99********8777.99999 PP == domain 3 score: 26.3 bits; conditional E-value: 4.6e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +++++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259445_1 468 SRTPAPGTQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 540 8***************9876699****999889*****985557*******99********8777.9****976 PP == domain 4 score: 27.9 bits; conditional E-value: 1.4e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259445_1 523 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTP 592 8***************997669******99889*****985557*******99********8777.99999 PP == domain 5 score: -2.4 bits; conditional E-value: 0.4 CTD 44 TPawd..........aagsrTPay.......ktaw 61 TP+ + +gs P++ + +w T259445_1 843 TPHPGcdgaaihtacSKGSAAPGWtctvlghCRTW 877 66666666666666677899998864444444444 PP == domain 6 score: -2.2 bits; conditional E-value: 0.35 CTD 12 gsrTPawgadgsrTpayggagsrtPaynagakTPawdaagsrTPayk 58 +r w a g + pa g r P + ++ Pa++ T259445_1 1222 AARSCSWDAGGGTAPAQG---HRRPRW---------V--QAGRPAWS 1254 344444444333334433...244444.........3..22333333 PP == domain 7 score: -1.7 bits; conditional E-value: 0.26 CTD 6 awnsaggsrTPawgadgs 23 aw++a+ +Paw+ d + T259445_1 1799 AWSQAKLPSAPAWHSDHQ 1816 677777777888876654 PP == domain 8 score: -5.2 bits; conditional E-value: 1 CTD 54 T 54 T T259445_1 2269 T 2269 2 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.61 # Mc/sec: 13286.44 // Query: T259445_2 [L=2833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-07 29.8 35.7 1.4e-05 25.0 10.4 10.4 10 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 10.4 8.5e-10 1.4e-05 7 98 .. 48 139 .. 45 141 .. 0.94 2 ! 21.4 17.2 1.1e-08 0.00018 5 98 .. 134 227 .. 131 230 .. 0.95 3 ! 6.8 8.8 0.00038 6.2 7 96 .. 202 291 .. 200 295 .. 0.86 4 ? -1.3 5.2 0.13 2.1e+03 24 91 .. 307 374 .. 284 382 .. 0.57 5 ! 7.6 16.9 0.00022 3.6 18 97 .. 376 457 .. 374 460 .. 0.85 6 ? 1.0 1.7 0.026 4.2e+02 27 88 .. 520 581 .. 498 593 .. 0.51 7 ? -7.6 23.6 1 1.6e+04 18 93 .. 597 675 .. 593 684 .. 0.71 8 ? -8.0 4.9 1 1.6e+04 80 93 .. 1476 1489 .. 1460 1507 .. 0.39 9 ? -25.3 28.0 1 1.6e+04 51 66 .. 2093 2108 .. 1999 2195 .. 0.61 10 ? -4.1 1.6 1 1.6e+04 22 53 .. 2440 2471 .. 2426 2474 .. 0.63 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 8.5e-10 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259445_2 48 GQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 139 6889999*********************************************************************************9996 PP == domain 2 score: 21.4 bits; conditional E-value: 1.1e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p++s ++p T259445_2 134 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 227 6689999*************************************************************************************96 PP == domain 3 score: 6.8 bits; conditional E-value: 0.00038 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssyta 96 +qp p+ s g+p + P s ++p +++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p ++ s ta T259445_2 202 GQPDPCPRLSAGQPDPCPRYSAGQPDPPQALSRTAGPLPQALSRTAGPLPQVLSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTA 291 688889999999999999999999999999999999999999999999999999999999999999999999999999998888777666 PP == domain 4 score: -1.3 bits; conditional E-value: 0.13 Mucin-like 24 Psssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdps 91 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p p T259445_2 307 QALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLAPG 374 34444555555555555666666666666666666666666666666666666666555555555554 PP == domain 5 score: 7.6 bits; conditional E-value: 0.00022 Mucin-like 18 gepsraPsssytapsrapsssygepprd..psssytapqsapsssytappstpsssygeppaapsssytapprdpsssytap 97 ++ sr+P ++ ++ sr+p +++r+ p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259445_2 376 QQDSRTPAPGTQQDSRTPTPGTQQDSRTpcPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQP 457 6789999999999999999999999966115689999999999999999999999999999999999999999999999998 PP == domain 6 score: 1.0 bits; conditional E-value: 0.026 Mucin-like 27 sytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytappr 88 s ta + ++ s +++p + s ta + + s ta p ++ s ++ p ++ s ta p T259445_2 520 SRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPLPQALSRTAGPL 581 33444444444455555555555555555555555555555555555555555555555554 PP == domain 7 score: -7.6 bits; conditional E-value: 1 Mucin-like 18 gepsraPsssytapsrapsssygepprdp..sssytapqsapsssytapps.tpsssygeppaapsssytapprdpsss 93 ++ sr+P ++ ++ sr+p +++r+p + s ++p p s ++p ++ s ++ p+ap s + p s+ T259445_2 597 QQDSRTPAPGTQQDSRTPTPGTQQDSRTPcpRLSAGQPDPCPRYSAGQPDPlPQALSRTAGPPAPGSQQDSRTPAPGSQ 675 6778889999999998888888888866411578888888888888888664558888888888877666555555554 PP == domain 8 score: -8.0 bits; conditional E-value: 1 Mucin-like 80 sssytapprdpsss 93 ss + + + ps++ T259445_2 1476 SSRKSPQTALPSGD 1489 22222222222222 PP == domain 9 score: -25.3 bits; conditional E-value: 1 Mucin-like 51 tapqsapsssytapps 66 t++q+ p+s t+p + T259445_2 2093 TPRQRVPDSPKTPPDR 2108 2222333333333333 PP == domain 10 score: -4.1 bits; conditional E-value: 1 Mucin-like 22 raPsssytapsrapsssygepprdpsssytap 53 ++P ++ + ++ s+ + p +p +s t p T259445_2 2440 QEPAPGAPPQDQRLSKGTDASPLPPGCSPTRP 2471 45555555556666667777777777776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.51 # Mc/sec: 15891.63 // Query: T259445_3 [L=2833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-15 56.8 118.7 9.2e-07 29.2 16.0 7.1 9 CTD Spt5 C-terminal nonapeptide repeat binding Spt4 7.5e-05 22.6 41.5 0.00018 21.4 15.5 10.7 13 Mucin-like Mucin-like ------ inclusion threshold ------ 0.015 15.8 0.9 1.3e+02 3.2 0.0 5.2 5 Caskin1-CID Caskin1 CASK-interaction domain Domain annotation for each model (and alignments): >> CTD Spt5 C-terminal nonapeptide repeat binding Spt4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.2 16.0 1.7e-10 9.2e-07 2 70 .. 49 121 .. 48 122 .. 0.90 2 ! 21.1 26.5 5.6e-08 0.0003 13 68 .. 93 152 .. 70 176 .. 0.40 3 ! 26.9 19.6 8.7e-10 4.7e-06 3 70 .. 116 187 .. 114 199 .. 0.48 4 ! 26.6 19.2 1.1e-09 6e-06 2 70 .. 148 220 .. 147 235 .. 0.91 5 ! 7.1 2.0 0.0013 7.2 2 25 .. 203 227 .. 202 249 .. 0.80 6 ! 19.2 5.5 2.2e-07 0.0012 21 67 .. 410 459 .. 395 475 .. 0.71 7 ? 3.8 0.3 0.014 77 2 16 .. 633 647 .. 617 666 .. 0.68 8 ? -3.0 0.0 2 1.1e+04 14 18 .. 913 917 .. 912 922 .. 0.53 9 ? -6.3 4.8 3 1.6e+04 42 49 .. 2139 2147 .. 2095 2185 .. 0.48 Alignments for each domain: == domain 1 score: 29.2 bits; conditional E-value: 1.7e-10 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259445_3 49 SRTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 121 9***************997769******99889*****985567*******9*********8887.9****976 PP == domain 2 score: 21.1 bits; conditional E-value: 5.6e-08 CTD 13 srTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpa 68 srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa T259445_3 93 SRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPA 152 333333222233333333322333333321222333333333333333332222.333332 PP == domain 3 score: 26.9 bits; conditional E-value: 8.7e-10 CTD 3 rTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 rTPa +s+++srTPa g + +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259445_3 116 RTPAPGSQQDSRTPAPGSQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGtQQDSRTPAPGSQQ-DSRTPAPG 187 5666666666666665544355665555555555555543334555555555555555554443.44444432 PP == domain 4 score: 26.6 bits; conditional E-value: 1.1e-09 CTD 2 srTPawnsaggsrTPawgad.gsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTpayg 70 srTPa +s+++srTPa g++ +srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTpa g T259445_3 148 SRTPAPGSQQDSRTPAPGTQqDSRTPAPGSQqDSRTPAPgsQQDSRTPAPGsQQDSRTPAPGSQQ-DSRTPAPG 220 8****************98779******99889*****985557*******99********8877.9****976 PP == domain 5 score: 7.1 bits; conditional E-value: 0.0013 CTD 2 srTPawnsaggsrTPawgad.gsrT 25 srTPa +s+++srTPa g++ +s+T T259445_3 203 SRTPAPGSQQDSRTPAPGTQqDSQT 227 8999999999999999887656676 PP == domain 6 score: 19.2 bits; conditional E-value: 2.2e-07 CTD 21 dgsrTpaygga.gsrtPay..nagakTPawd.aagsrTPayktawdgsrTp 67 ++srTpa g++ +srtPa +++++TPa + +++srTPa +++ +srTp T259445_3 410 QDSRTPAPGTQqDSRTPAPgsQQDSQTPAPGsQQDSRTPAPGSQL-DSRTP 459 467777777666777777763445777777777777777776666.67776 PP == domain 7 score: 3.8 bits; conditional E-value: 0.014 CTD 2 srTPawnsaggsrTP 16 srTPa +++++srTP T259445_3 633 SRTPAPGTQQDSRTP 647 344444444444444 PP == domain 8 score: -3.0 bits; conditional E-value: 2 CTD 14 rTPaw 18 +TPaw T259445_3 913 QTPAW 917 34444 PP == domain 9 score: -6.3 bits; conditional E-value: 3 CTD 42 akTPawd.a 49 + TP ++ T259445_3 2139 TDTPRQKvP 2147 333333331 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -8.4 34.4 3 1.6e+04 5 88 .. 44 127 .. 39 130 .. 0.53 2 ? -21.7 50.1 3 1.6e+04 7 92 .. 112 197 .. 106 223 .. 0.60 3 ? -5.0 38.2 3 1.6e+04 5 98 .. 165 259 .. 151 261 .. 0.87 4 ! 10.4 23.3 8.6e-05 0.47 2 98 .. 195 292 .. 194 294 .. 0.92 5 ! 17.8 18.0 4.4e-07 0.0024 3 98 .. 219 314 .. 217 316 .. 0.94 6 ! 13.7 10.0 8.5e-06 0.046 5 89 .. 309 394 .. 306 410 .. 0.64 7 ? -1.2 26.9 0.38 2.1e+03 6 98 .. 408 502 .. 403 504 .. 0.85 8 ! 21.4 15.5 3.3e-08 0.00018 5 98 .. 464 557 .. 460 560 .. 0.93 9 ! 9.4 11.1 0.00018 0.95 5 92 .. 541 629 .. 538 638 .. 0.76 10 ? -4.0 6.1 2.6 1.4e+04 15 77 .. 618 681 .. 605 685 .. 0.60 11 ? -1.6 1.0 0.48 2.6e+03 21 47 .. 938 964 .. 934 990 .. 0.56 12 ? -0.9 1.1 0.29 1.6e+03 20 38 .. 1369 1386 .. 1358 1391 .. 0.62 13 ? -10.9 9.3 3 1.6e+04 54 68 .. 2144 2158 .. 2104 2190 .. 0.48 Alignments for each domain: == domain 1 score: -8.4 bits; conditional E-value: 3 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytappr 88 s q +++p ++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++tp ++ + +++p + + +r T259445_3 44 SVQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSR 127 334455555555555555555555555555555555555555555555555555555555555555555555555555555544 PP == domain 2 score: -21.7 bits; conditional E-value: 3 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpss 92 q +++p ++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++tp ++ + +++p + + +r+p T259445_3 112 QQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGTQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAP 197 55666666666666666666666666666666666666666666666666666666666666666666666665555555555533 PP == domain 3 score: -5.0 bits; conditional E-value: 3 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprdpsssytapp 98 q +++p ++ sr+P ++ ++ sr+p + +++r+p +++ +++p ++++ +p s g+p + p+ s ++p p++s ++p T259445_3 165 GTQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGSQQDSRTPAPGTQQDSQtRPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPD 259 44566789999999999999999999999999999999999999999999999999999988789999999999999999999999999999996 PP == domain 4 score: 10.4 bits; conditional E-value: 8.6e-05 Mucin-like 2 psssstqppaspsssygepsraPsssytaps.rapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 p + s q +++p ++ sr+P ++ ++ s +p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259445_3 195 PAPGSQQDSRTPAPGSQQDSRTPAPGTQQDSqTRPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 292 566678999*****************76655389**************************************************************96 PP == domain 5 score: 17.8 bits; conditional E-value: 4.4e-07 Mucin-like 3 sssstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 ++ + + + p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259445_3 219 PGTQQDSQTRPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPD 314 5566778899***********************************************************************************996 PP == domain 6 score: 13.7 bits; conditional E-value: 8.5e-06 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytapps.tpsssygeppaapsssytapprd 89 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p ++ s ++ p ++ s ta p + T259445_3 309 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPlPQALSRTAGPLPQVLSRTAGPLP 394 44566666777777777777777777777777777777777777777777777777777655344566666666666655555555 PP == domain 7 score: -1.2 bits; conditional E-value: 0.38 Mucin-like 6 stqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqs..apsssytappstpsssygeppaapsssytapprdpsssytapp 98 s q +++p ++ sr+P ++ ++ s++p + +++r+p ++ ++ p s ++p p s g+p + p+ s ++p p+ s ++p T259445_3 408 SQQDSRTPAPGTQQDSRTPAPGSQQDSQTPAPGSQQDSRTPAPGSQLDSRtpCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPD 502 4678899999999999******999999999999999999886665554433789999999999999999999999***********99999996 PP == domain 8 score: 21.4 bits; conditional E-value: 3.3e-08 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdpsssytapp 98 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p p s ++p p s g+p + p+ s ++p p+ s ++p T259445_3 464 SAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRYSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPD 557 66899999999******************************************************************************99996 PP == domain 9 score: 9.4 bits; conditional E-value: 0.00018 Mucin-like 5 sstqppaspsssygepsraPsssytapsrapsssygepprdpsssytap.qsapsssytappstpsssygeppaapsssytapprdpss 92 s +qp p+ s g+p + P s ++p + p s g+p p+ s ++p + + s ta p ++ s ++ p ++ s ta p p s T259445_3 541 SAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPDPCPRLSAGQPdPLPQALSRTAGPLPQVLSRTAGPLPQVLSRTAGPLAPGS 629 55677788888888888888888888888888888888888888888887777778888888888888888888888888888887765 PP == domain 10 score: -4.0 bits; conditional E-value: 2.6 Mucin-like 15 ssygepsraPsssytapsrapsssygepprdpsssytap.qsapsssytappstpsssygeppa 77 s ++ + aP s ++ +ap p+ s ++p + + s ta p ++ s +++pa T259445_3 618 LSRTAGPLAPGSQQDSRTPAPGTQQDSRTPCPRLSAGQPdPLPQALSRTAGPLPQALSWTARPA 681 5556666666666666666666666666666666666665556666666666666666665554 PP == domain 11 score: -1.6 bits; conditional E-value: 0.48 Mucin-like 21 sraPsssytapsrapsssygepprdps 47 +r+P +s+ p+++p +s +++ r+p T259445_3 938 PRKPVHSICRPKEEPPESREAACREPA 964 455555555555555555555554443 PP == domain 12 score: -0.9 bits; conditional E-value: 0.29 Mucin-like 20 psraPsssytapsrapsss 38 p+++P+ s p+ +p ss T259445_3 1369 PQQDPEASLPHPP-DPASS 1386 4455555555555.44443 PP == domain 13 score: -10.9 bits; conditional E-value: 3 Mucin-like 54 qsapsssytappstp 68 q+ p+s t+p + + T259445_3 2144 QKVPDSPKTPPDRGS 2158 112222222222222 PP >> Caskin1-CID Caskin1 CASK-interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.032 1.8e+02 35 51 .. 2050 2066 .. 2047 2068 .. 0.83 2 ? -1.2 0.0 0.55 3e+03 36 49 .. 2075 2088 .. 2071 2089 .. 0.78 3 ? 2.7 0.0 0.032 1.8e+02 35 51 .. 2098 2114 .. 2095 2116 .. 0.83 4 ? 3.2 0.0 0.023 1.3e+02 35 51 .. 2158 2174 .. 2149 2176 .. 0.82 5 ? -1.2 0.0 0.55 3e+03 36 49 .. 2183 2196 .. 2179 2197 .. 0.78 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.032 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259445_3 2050 SQTHLRHPQTEGPKLTS 2066 567899********965 PP == domain 2 score: -1.2 bits; conditional E-value: 0.55 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259445_3 2075 QTQLRHPQTEGPRL 2088 44577*******98 PP == domain 3 score: 2.7 bits; conditional E-value: 0.032 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259445_3 2098 SQTHLRHPQTEGPKLTS 2114 567899********965 PP == domain 4 score: 3.2 bits; conditional E-value: 0.023 Caskin1-CID 35 ssghaLHagaeGvklla 51 s++h H+++eG+kl + T259445_3 2158 SQTHLRHPQTEGPKLTS 2174 667999********965 PP == domain 5 score: -1.2 bits; conditional E-value: 0.55 Caskin1-CID 36 sghaLHagaeGvkl 49 +++ H+++eG++l T259445_3 2183 QTQLRHPQTEGPRL 2196 44577*******98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.13u 0.27s 00:00:01.40 Elapsed: 00:00:00.55 # Mc/sec: 14735.88 // Query: T001704_1 [L=2169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 11707.81 // Query: T001704_2 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 11927.46 // Query: T001704_3 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.2 0.0 0.34 10.8 0.0 1.6 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 2.1e-05 0.34 37 82 .. 632 678 .. 616 688 .. 0.79 2 ? -3.7 0.0 0.64 1e+04 5 22 .. 1414 1431 .. 1413 1437 .. 0.84 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 2.1e-05 HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 37 kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 k+ gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001704_3 632 KRAGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 678 689********************853788888888877777777765 PP == domain 2 score: -3.7 bits; conditional E-value: 0.64 HTTTTSSEEEEEEEEEEB CS GFO_IDH_MocA_C 5 engklGevvsvdvwtldt 22 + g++G++ +++ w+ + T001704_3 1414 RRGSIGKPCMFHFWFNQA 1431 6899********999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48 # Mc/sec: 12921.42 // Query: T361757_1 [L=4811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.29s 00:00:01.45 Elapsed: 00:00:00.56 # Mc/sec: 24146.41 // Query: T361757_2 [L=4811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-23 83.3 5.8 1.9e-23 83.3 5.8 2.3 2 POM121 POM121 family Domain annotation for each model (and alignments): >> POM121 POM121 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.3 5.8 1.2e-27 1.9e-23 2 210 .. 261 468 .. 260 478 .. 0.86 2 ? -1.9 1.0 0.12 2e+03 102 140 .. 3090 3127 .. 3087 3151 .. 0.81 Alignments for each domain: == domain 1 score: 83.3 bits; conditional E-value: 1.2e-27 POM121 2 esrkrtveeeddqvvtegqeskrrrpdssgsaqSafepLvanGvlsslvpkpgsLkrglnsks.sedslskrsrtsslSslaggipsskrnAItSSYSst 100 e++k++ e d qv t++qe+++r+p s+g+a S+++pL ++G ++s + +p++L+++++ ks +e++ + ++++ +S sk ++SS+S + T361757_2 261 EEPKEATEVKD-QVETQEQEDNKRGPCSNGEAASTSRPLETQGNPTSPRYNPRPLEGNVQLKSlTENNQTDKAQVHAVSFY------SKGHGVASSHSPA 353 66777778888.9**********************************************877626888899********99......************* PP POM121 101 rglsqlkkrsgpsssplsspassrsqtperpakkvreeegqsssssaslksdkesqeekaaetptgkkqnsrsssptsgssrprKRK....ipLlp.... 192 +g+ l +++p + l+ p ++s pe++a kv + + +ss+ l+ +k++q++ a +++ + r ++ s r rKRK + p T361757_2 354 GGI-LLFGKPDPVPTVLPAPVPGCSLWPEKAALKVLGKD-HLPSSPGLLMVGKDMQPKDPAALGSSRSSPPR--ATGYRSHRSRKRKllgpL---Pqlqp 446 ***.7799***************************7777.89***************999988666666454..556667777777754442...12445 PP POM121 193 .......srrgeqltLPpppqlGys 210 ++r+e Ppp++l++ T361757_2 447 tpplqlrWDRDE---PPPPAKLPCL 468 9999999*****...6999999996 PP == domain 2 score: -1.9 bits; conditional E-value: 0.12 POM121 102 glsqlkkrsgpsssplsspassrsqtperpakkvreeeg 140 gl q+++r p+ + l+sp+ s + p +++++ ++e+ T361757_2 3090 GLHQQQQRWAPQLP-LPSPGPSPMKCPSKTKQEWQQEKE 3127 88899999998765.89*****99999999999976654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4811 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 24146.41 // Query: T361757_3 [L=4810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.25s 00:00:01.40 Elapsed: 00:00:00.50 # Mc/sec: 27521.18 // Query: T210761_1 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1265 (0.0775788); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.60 # Mc/sec: 4686.99 // Query: T210761_2 [L=983] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (983 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1401 (0.0859193); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.64 # Mc/sec: 4394.06 // Query: T210761_3 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1360 (0.0834049); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.43s 00:00:01.60 Elapsed: 00:00:00.60 # Mc/sec: 4682.23 // Query: T210976_1 [L=6940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.29s 00:00:01.78 Elapsed: 00:00:00.60 # Mc/sec: 33090.27 // Query: T210976_2 [L=6939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.62 # Mc/sec: 32018.22 // Query: T210976_3 [L=6939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.33s 00:00:01.79 Elapsed: 00:00:00.62 # Mc/sec: 32018.22 // Query: T060455_1 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-08 32.3 0.4 0.42 10.6 0.1 4.5 4 zf-BED BED zinc finger ------ inclusion threshold ------ 0.045 14.1 0.2 60 4.0 0.1 3.7 4 DUF3505 Protein of unknown function (DUF3505) 0.13 12.2 1.9 38 4.4 0.0 3.8 4 DUF678 Protein of unknown function (DUF678) Domain annotation for each model (and alignments): >> zf-BED BED zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.1 7.7e-05 0.42 14 44 .] 1181 1210 .. 1171 1210 .. 0.89 2 ? 0.5 0.0 0.11 5.9e+02 14 43 .. 1266 1294 .. 1261 1295 .. 0.72 3 ! 8.8 0.0 0.00027 1.5 8 44 .] 1414 1449 .. 1408 1449 .. 0.87 4 ! 6.3 0.0 0.0017 9 13 44 .] 1582 1612 .. 1574 1612 .. 0.87 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 7.7e-05 SS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++ vC+ Cg l+ + +krH+r kHp T060455_1 1181 RHGMVCMVCGSSLAT-LKLSTIKRHIRQKHP 1210 67889**********.5*************8 PP == domain 2 score: 0.5 bits; conditional E-value: 0.11 SS--EETTTTEE----SSTHHHHHHHHHS- CS zf-BED 14 kqkavCryCgkvlsrgngttnLkrHLrrkH 43 +++vC+ Cg+ l + +++H H T060455_1 1266 GNRLVCMACGRALPSL-HLDDIRAHVLEVH 1294 5899******998773.6666666665555 PP == domain 3 score: 8.8 bits; conditional E-value: 0.00027 ----GGSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 8 tiveakkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 ++++++ +vC Cg l++ + + rH+rr+Hp T060455_1 1414 MELDGGRRGLVCGVCGGALAS-LKMSTIERHIRRRHP 1449 5566888999***********.5*************8 PP == domain 4 score: 6.3 bits; conditional E-value: 0.0017 GSS--EETTTTEE----SSTHHHHHHHHHS-H CS zf-BED 13 kkqkavCryCgkvlsrgngttnLkrHLrrkHp 44 + +vC+ Cg l+ ++ +krH+ Hp T060455_1 1582 SRRGLVCMVCGGALAT-LKVSTIKRHILQVHP 1612 56678***********.5**********9998 PP >> DUF3505 Protein of unknown function (DUF3505) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.1 0.011 60 9 35 .. 1181 1210 .. 1174 1226 .. 0.74 2 ? -2.0 0.0 0.82 4.5e+03 4 30 .. 1261 1290 .. 1259 1297 .. 0.70 3 ? 3.1 0.0 0.021 1.1e+02 12 39 .. 1423 1453 .. 1414 1489 .. 0.74 4 ? 1.5 0.0 0.067 3.6e+02 4 53 .. 1578 1629 .. 1575 1636 .. 0.68 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.011 DUF3505 9 yrvliCreCkyavlp...selerHLrkrhr 35 + ++C C ++++ s+++rH+r++h T060455_1 1181 RHGMVCMVCGSSLATlklSTIKRHIRQKHP 1210 445788888877766666888999998885 PP == domain 2 score: -2.0 bits; conditional E-value: 0.82 DUF3505 4 eyneeyrvliCreCkyavlp...selerHL 30 y+++ + l+C +C a+ +++ H T060455_1 1261 DYDPRGNRLVCMACGRALPSlhlDDIRAHV 1290 577777889*****9998774445555565 PP == domain 3 score: 3.1 bits; conditional E-value: 0.021 DUF3505 12 liCreCkyavlp...selerHLrkrhrqlkr 39 l+C C a++ s++erH+r+rh r T060455_1 1423 LVCGVCGGALASlkmSTIERHIRRRHPGSTR 1453 79999999998777799******99976544 PP == domain 4 score: 1.5 bits; conditional E-value: 0.067 DUF3505 4 eyneeyrvliCreCkyavlp...selerHLrkrhrqlkrektqelletvehem 53 y+ + r l+C C a++ s+++rH+ + h + + t e ++t+ +++ T060455_1 1578 DYDGSRRGLVCMVCGGALATlkvSTIKRHILQVHP-FSMDFTPEERQTILEAY 1629 57777788999999999887777999999875443.33455566666665554 PP >> DUF678 Protein of unknown function (DUF678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.014 76 55 72 .. 1180 1197 .. 1168 1199 .. 0.79 2 ? 4.4 0.0 0.0069 38 54 71 .. 1264 1281 .. 1254 1285 .. 0.85 3 ? -0.7 0.0 0.26 1.4e+03 53 72 .. 1417 1436 .. 1406 1438 .. 0.76 4 ? -0.6 0.0 0.24 1.3e+03 57 72 .. 1584 1599 .. 1574 1600 .. 0.83 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.014 DUF678 55 kgntlrCaACgSsLtlLr 72 + + + C CgSsL +L+ T060455_1 1180 ARHGMVCMVCGSSLATLK 1197 566789*********997 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0069 DUF678 54 gkgntlrCaACgSsLtlL 71 ++gn l C ACg +L +L T060455_1 1264 PRGNRLVCMACGRALPSL 1281 679***********9887 PP == domain 3 score: -0.7 bits; conditional E-value: 0.26 DUF678 53 vgkgntlrCaACgSsLtlLr 72 g l C Cg +L +L+ T060455_1 1417 DGGRRGLVCGVCGGALASLK 1436 56667899********9996 PP == domain 4 score: -0.6 bits; conditional E-value: 0.24 DUF678 57 ntlrCaACgSsLtlLr 72 l C Cg +L +L+ T060455_1 1584 RGLVCMVCGGALATLK 1599 6799********9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14513.60 // Query: T060455_2 [L=2840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14508.50 // Query: T060455_3 [L=2840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 14508.50 // Query: T013930_1 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 9848.67 // Query: T013930_2 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-27 94.5 0.2 4.6e-27 93.6 0.2 1.5 1 Transposase_1 Transposase (partial DDE domain) 1.4e-06 27.8 0.2 2.2e-06 27.2 0.2 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.6 0.2 5.6e-31 4.6e-27 9 80 .] 1538 1608 .. 1537 1608 .. 0.96 Alignments for each domain: == domain 1 score: 93.6 bits; conditional E-value: 5.6e-31 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 aqWld++ +pk++pkp+l qkkvm VwWsa+gli+y fl pgetitse+Yaqq +++++klq +++a+vnr T013930_2 1538 AQWLDQE-APKHFPKPNLDQKKVMFAVWWSAAGLIHYCFLTPGETITSEKYAQQFKEMNRKLQPLQSAMVNR 1608 79*9986.68************************************************************97 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.2 2.7e-10 2.2e-06 49 140 .. 340 434 .. 338 444 .. 0.86 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 2.7e-10 DDE_1 49 rkawltssifeeWLekvfdkrve.kaekrk....vlLllddsrshe.tvelsecelqniklvflPasstsll.qPldqgvvselKarYrrqllkallal 140 +++ + + +f W++++f+++ve k+k +lLl+d+ ++ + + + +++i++vf+Pa+ +s+l + d+gv+ ++K++Y r++l+++ + T013930_2 340 QQSLMKALLFILWFTEYFKPTVEtYCFKKKipf*ILLLIDNEAGNPrALTE---IYKKINVVFMPANKSSIL*H-TDKGVIFTFKSYYLRKTLHKATTA 434 56778889999************6555666556669********9977777...8************9999888.6*****************998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 10227.47 // Query: T013930_3 [L=1859] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-07 28.6 0.1 2.2e-06 27.5 0.1 1.6 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain 0.00061 19.3 0.1 0.0015 18.0 0.0 1.7 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.1 2.7e-10 2.2e-06 11 58 .. 170 222 .. 168 223 .. 0.96 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 2.7e-10 HHHHHC.CT---SCHHHHHHHHHHH.....HHSSSCT-TT-S--CHHHHHHHH CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela.....slaadpkepdfkaSkgWldrFkk 58 Wi++++ ++p++++li++k + l+ ++++++ +++fka gWl rFk+ T013930_3 170 WIENQTSPNIPLSQSLIQRKVLTLFnsvkaERGEETAGEKFKATRGWLMRFKE 222 ******************************99999****************95 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.8e-07 0.0015 1 46 [. 293 337 .. 293 337 .. 0.93 2 ? -3.1 0.1 0.55 4.5e+03 66 101 .. 1360 1397 .. 1356 1398 .. 0.79 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.8e-07 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyk 46 k+rlt+ l+anaag kLkp++i +++sp a kn + k +l+v yk T013930_3 293 KNRLTLSLGANAAGHLKLKPMLINQSESPWALKN-YAKPTLPVPYK 337 679*******************************.88888888885 PP == domain 2 score: -3.1 bits; conditional E-value: 0.55 DDE_1 66 fdkrve...kaekrkvlLllddsrshetvelsecelqni 101 f+k +e k++k +v+ l + +h++ve +++ +n+ T013930_3 1360 FEKMMEmmlKKKKIRVIFLFEVKMGHKAVET-TRKINNT 1397 6777777778999999999999999999998.6666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1859 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 9669.61 // Query: T211313_1 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 356 (0.0218325); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 9370.57 // Query: T211313_2 [L=1736] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1736 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 9197.04 // Query: T211313_3 [L=1735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1735 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 9365.17 // Query: T155159_1 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 3187.78 // Query: T155159_2 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 3323.43 // Query: T155159_3 [L=546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 3323.43 // Query: T131258_1 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 12505.91 // Query: T131258_2 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 12733.29 // Query: T131258_3 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.73 # Mc/sec: 9593.58 // Query: T354189_1 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 508 (0.0311542); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.56 # Mc/sec: 5481.55 // Query: T354189_2 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.68 # Mc/sec: 4514.22 // Query: T354189_3 [L=1072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 4444.65 // Query: T096588_1 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.63 # Mc/sec: 4681.77 // Query: T096588_2 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 5085.37 // Query: T096588_3 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 4757.28 // Query: T215475_1 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-18 65.3 0.0 6.8e-18 64.9 0.0 1.2 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.9 0.0 4.2e-22 6.8e-18 5 117 .. 69 177 .. 65 179 .. 0.95 Alignments for each domain: == domain 1 score: 64.9 bits; conditional E-value: 4.2e-22 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqd 104 e +qvD+t+++ + gg++yllv + ++ +++ a+++ +e +a +v+++l r + ++g p+r+ sDng ++++ ++++++ lgi +++++++rpq+ T215475_1 69 FEDLQVDFTEMP--KCGGNKYLLVLLCTYCGWVEAYPTLTE-KAREVTCVLLRDLIPRFGL-PLRISSDNGLTFVADLVQKIAKVLGIIWKLHAAYRPQS 164 5668********..9999***********************.9999999999999999999.************************************** PP rve 105 nGkvErfnrtlkd 117 k+E++n+t+k+ T215475_1 165 SRKAEQMNQTIKN 177 ***********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.69 # Mc/sec: 3648.59 // Query: T215475_2 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3873.12 // Query: T215475_3 [L=880] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-10 40.2 0.5 5.6e-10 39.2 0.5 1.5 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.2 0.5 3.4e-14 5.6e-10 1 39 [] 8 46 .. 8 46 .. 0.98 Alignments for each domain: == domain 1 score: 39.2 bits; conditional E-value: 3.4e-14 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++ll r++++ +++++++V+++C++C+ T215475_3 8 HETTHLGQESLEKLLGRYFYISYLSTLAKTVTQQCVTCR 46 9*************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (880 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 3996.08 // Query: T263731_1 [L=569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1259 (0.0772108); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 113 (0.00692996); expected 16.3 (0.001) Passed Fwd filter: 54 (0.00331166); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.63u 0.52s 00:00:03.15 Elapsed: 00:00:01.00 # Mc/sec: 1627.81 // Query: T263731_2 [L=569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1217 (0.0746351); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 115 (0.00705262); expected 16.3 (0.001) Passed Fwd filter: 54 (0.00331166); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.62u 0.47s 00:00:03.09 Elapsed: 00:00:00.91 # Mc/sec: 1788.80 // Query: T263731_3 [L=569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 994 (0.0609592); expected 326.1 (0.02) Passed bias filter: 190 (0.0116522); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.51s 00:00:02.37 Elapsed: 00:00:00.92 # Mc/sec: 1769.36 // Query: T304126_1 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 754 (0.0462406); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.39s 00:00:02.14 Elapsed: 00:00:00.81 # Mc/sec: 10002.31 // Query: T304126_2 [L=2832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 543 (0.0333006); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:00.79 # Mc/sec: 10255.53 // Query: T304126_3 [L=2831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 777 (0.0476512); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:00.84 # Mc/sec: 9641.68 // Query: T343162_1 [L=8787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.36u 0.42s 00:00:02.78 Elapsed: 00:00:00.76 # Mc/sec: 33076.46 // Query: T343162_2 [L=8787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.43s 00:00:02.80 Elapsed: 00:00:00.87 # Mc/sec: 28894.38 // Query: T343162_3 [L=8787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.36u 0.42s 00:00:02.78 Elapsed: 00:00:00.94 # Mc/sec: 26742.67 // Query: T337000_1 [L=1242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 6460.27 // Query: T337000_2 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.57 # Mc/sec: 6121.19 // Query: T337000_3 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 5379.23 // Query: T090191_1 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1455 (0.089231); expected 326.1 (0.02) Passed bias filter: 385 (0.0236109); expected 326.1 (0.02) Passed Vit filter: 201 (0.0123268); expected 16.3 (0.001) Passed Fwd filter: 58 (0.00355697); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.01u 0.49s 00:00:03.50 Elapsed: 00:00:01.02 # Mc/sec: 4655.86 // Query: T090191_2 [L=1660] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1660 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1450 (0.0889243); expected 326.1 (0.02) Passed bias filter: 381 (0.0233656); expected 326.1 (0.02) Passed Vit filter: 217 (0.013308); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.21u 0.49s 00:00:03.70 Elapsed: 00:00:01.02 # Mc/sec: 4655.86 // Query: T090191_3 [L=1659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1594 (0.0977554); expected 326.1 (0.02) Passed bias filter: 412 (0.0252668); expected 326.1 (0.02) Passed Vit filter: 256 (0.0156997); expected 16.3 (0.001) Passed Fwd filter: 62 (0.00380228); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.30u 0.56s 00:00:03.86 Elapsed: 00:00:01.08 # Mc/sec: 4394.55 // Query: T353198_1 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 5519.43 // Query: T353198_2 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 5716.55 // Query: T353198_3 [L=1119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.67 # Mc/sec: 4778.01 // Query: T124678_1 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 6756.61 // Query: T124678_2 [L=1606] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1606 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.71 # Mc/sec: 6471.12 // Query: T124678_3 [L=1605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1605 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 8348.42 // Query: T156147_1 [L=2615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.76 # Mc/sec: 9843.51 // Query: T156147_2 [L=2615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.65 # Mc/sec: 11509.34 // Query: T156147_3 [L=2614] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2614 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 10683.16 // Query: T239002_1 [L=462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.56 # Mc/sec: 2318.78 // Query: T239002_2 [L=462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2697.35 // Query: T239002_3 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2691.52 // Query: T052978_1 [L=7398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.40s 00:00:02.40 Elapsed: 00:00:00.83 # Mc/sec: 25499.30 // Query: T052978_2 [L=7398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.37s 00:00:02.27 Elapsed: 00:00:00.71 # Mc/sec: 29809.04 // Query: T052978_3 [L=7397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.38s 00:00:02.54 Elapsed: 00:00:00.89 # Mc/sec: 23777.03 // Query: T358013_1 [L=2148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1328 (0.0814424); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.31s 00:00:01.62 Elapsed: 00:00:00.57 # Mc/sec: 10594.94 // Query: T358013_2 [L=2148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1029 (0.0631056); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.66 # Mc/sec: 9310.70 // Query: T358013_3 [L=2147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1216 (0.0745738); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.36s 00:00:01.71 Elapsed: 00:00:00.68 # Mc/sec: 9032.65 // Query: T201378_1 [L=4424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.38s 00:00:01.71 Elapsed: 00:00:00.71 # Mc/sec: 17825.79 // Query: T201378_2 [L=4424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.33s 00:00:01.69 Elapsed: 00:00:00.75 # Mc/sec: 16875.08 // Query: T201378_3 [L=4424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.66 # Mc/sec: 19176.23 // Query: T330239_1 [L=2546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0015 18.2 1.9 0.0033 17.1 1.9 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 1.9 2e-07 0.0033 6 30 .. 1968 1992 .. 1966 1995 .. 0.93 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 2e-07 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkk 30 ++ aqWld++++pk++pkp+ hqk+ T330239_1 1968 RQPAQWLDQEAAPKHFPKPNSHQKR 1992 6899*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 12778.37 // Query: T330239_2 [L=2545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 13001.45 // Query: T330239_3 [L=2545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-18 66.2 0.0 3.5e-18 65.1 0.0 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.1 0.0 2.2e-22 3.5e-18 12 79 .. 1973 2040 .. 1963 2041 .. 0.85 Alignments for each domain: == domain 1 score: 65.1 bits; conditional E-value: 2.2e-22 Transposase_1 12 ldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr.qklqekrpalvn 79 + + k +pk++l kkvm+tV+Wsa+gli+y+fl+pget t e+Y qq+d+++ + lq+++pal+n T330239_3 1973 VRPRSRSKALPKAKLAPKKVMVTVCWSAAGLIHYSFLNPGETSTLEKYVQQIDEMH*K-LQCLQPALIN 2040 566778999**********************************************743.4555566655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.57 # Mc/sec: 12553.12 // Query: T357999_1 [L=1577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1053 (0.0645775); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.52 # Mc/sec: 8676.02 // Query: T357999_2 [L=1577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 990 (0.0607138); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.53 # Mc/sec: 8512.32 // Query: T357999_3 [L=1576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1311 (0.0803999); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.51 # Mc/sec: 8840.53 // Query: T188383_1 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.50 # Mc/sec: 15677.35 // Query: T188383_2 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 15074.37 // Query: T188383_3 [L=2740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 14516.06 // Query: T051530_1 [L=4685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 23514.01 // Query: T051530_2 [L=4684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.56 # Mc/sec: 23509.00 // Query: T051530_3 [L=4684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0053 16.5 6.3 0.52 10.1 1.1 2.4 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.1 3.2e-05 0.52 9 39 .. 107 137 .. 106 138 .. 0.70 2 ! 9.8 0.7 3.9e-05 0.64 3 40 .] 136 173 .. 135 176 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.2e-05 Pentapeptide_2 9 GsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 Gs+ tG++ +Gs+ tGs +Gs+ tG + tG T051530_3 107 GSVATGTVAMGSVATGSVATGSVATGTVATG 137 7777777777777777777777777777776 PP == domain 2 score: 9.8 bits; conditional E-value: 3.9e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntGs 40 tGs+ +G++ tG++ +G++ tGs Gs+ Gs tGs T051530_3 136 TGSVATGTVATGSVATGTVATGSVARGSVARGSMATGS 173 78888888888888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.59 # Mc/sec: 22712.08 // Query: T230006_1 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 8525.27 // Query: T230006_2 [L=1489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.51 # Mc/sec: 8352.50 // Query: T230006_3 [L=1489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-48 162.1 4.8 1.1e-47 161.0 4.8 1.5 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 4.2 7.3 13.3 3 7.8 1.4 2.2 2 ADIP Afadin- and alpha -actinin-Binding 8.5 6.9 8.7 6.2 7.3 2.1 2.2 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.0 4.8 2e-51 1.1e-47 16 121 .] 637 742 .. 633 742 .. 0.99 Alignments for each domain: == domain 1 score: 161.0 bits; conditional E-value: 2e-51 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagalrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelra 115 cd+qlr vq++++slmee+arad+e+rlfgg++a a+r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra T230006_3 637 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAIRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRA 736 69************************************************************************************************** PP TMEM191C 116 rGllPa 121 +GllP+ T230006_3 737 NGLLPT 742 *****7 PP >> ADIP Afadin- and alpha -actinin-Binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 1.4 0.00056 3 37 83 .. 333 383 .. 324 388 .. 0.78 2 ? 4.4 4.6 0.0059 32 63 100 .. 561 598 .. 557 617 .. 0.55 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00056 ADIP 37 iinviysLlqardrd....leqreslnetirkleaeierlqskierlktql 83 +++ +Ll ++++d ++ +++l++ +r leae+e+l+++ + l+++ T230006_3 333 AMAATQELLLQLQKDnrdgRQRKQELEKLMRGLEAESESLNQRLQDLSERE 383 56667788877777633334567899999*****************99875 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0059 ADIP 63 rkleaeierlqskierlktqleqlerelalvqakerql 100 ++ +++ ++l ++ l+++le e+++al+++k++q T230006_3 561 QSQKSTEQQLAAQLVTLQNELELAETKCALQEEKLQQD 598 33444555555555555555555555555555555544 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 2.1 0.0011 6.2 16 62 .. 332 381 .. 328 385 .. 0.76 2 ? 3.1 0.6 0.024 1.3e+02 17 58 .. 526 582 .. 522 610 .. 0.82 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0011 Syntaxin-6_N 16 kleslyrrw.eelledtss..stseeldetrteLrkalrsiewdledLee 62 ++ + +++ +l++d+++ ++++el+++++ L+++ +s+++ l+dL e T230006_3 332 TAMAATQELlLQLQKDNRDgrQRKQELEKLMRGLEAESESLNQRLQDLSE 381 44444444424666666666568*************************86 PP == domain 2 score: 3.1 bits; conditional E-value: 0.024 Syntaxin-6_N 17 leslyrrweelledtsss...............tseeldetrteLrkalrsiewdle 58 ++l ++weel ++++ + + ++ ++t+++L ++l +++++le T230006_3 526 SRQLQEQWEELSSQKPGKprpykprp*lfyyggELQSQKSTEQQLAAQLVTLQNELE 582 68999***99999988845899**********99999999************99997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 356 (0.0218325); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 8191.88 // Query: T071909_1 [L=2076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 11205.82 // Query: T071909_2 [L=2075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 11200.42 // Query: T071909_3 [L=2075] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2075 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 11200.42 // Query: T224642_1 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1667 (0.102232); expected 326.1 (0.02) Passed bias filter: 431 (0.026432); expected 326.1 (0.02) Passed Vit filter: 239 (0.0146572); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.60 # Mc/sec: 4477.20 // Query: T224642_2 [L=938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1308 (0.0802159); expected 326.1 (0.02) Passed bias filter: 355 (0.0217711); expected 326.1 (0.02) Passed Vit filter: 166 (0.0101803); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.59 # Mc/sec: 4548.23 // Query: T224642_3 [L=938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-08 32.7 0.9 5.7e-08 32.1 0.9 1.4 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.1 0.9 3.5e-12 5.7e-08 1 16 [. 458 473 .. 458 476 .. 0.93 Alignments for each domain: == domain 1 score: 32.1 bits; conditional E-value: 3.5e-12 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+WMELE+IILS+ T224642_3 458 SFAGTWMELETIILSK 473 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1382 (0.0847541); expected 326.1 (0.02) Passed bias filter: 388 (0.0237949); expected 326.1 (0.02) Passed Vit filter: 174 (0.0106709); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.54 # Mc/sec: 4969.37 // Query: T368458_1 [L=2976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.54 # Mc/sec: 15766.35 // Query: T368458_2 [L=2976] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2976 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.25s 00:00:01.24 Elapsed: 00:00:00.54 # Mc/sec: 15766.35 // Query: T368458_3 [L=2975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.54 # Mc/sec: 15761.05 // Query: T239549_1 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4478.07 // Query: T239549_2 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 4388.51 // Query: T239549_3 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4478.07 // Query: T359855_1 [L=2659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2659 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.53 # Mc/sec: 14352.73 // Query: T359855_2 [L=2658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 13825.61 // Query: T359855_3 [L=2658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13578.73 // Query: T259855_1 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10585.07 // Query: T259855_2 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10585.07 // Query: T259855_3 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 10788.63 // Query: T228586_1 [L=1788] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1788 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9651.25 // Query: T228586_2 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 9645.86 // Query: T228586_3 [L=1787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 10024.12 // Query: T191696_1 [L=814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.61 # Mc/sec: 3817.57 // Query: T191696_2 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 3876.42 // Query: T191696_3 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.64 # Mc/sec: 3634.15 // Query: T124764_1 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.60 # Mc/sec: 7013.80 // Query: T124764_2 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 7013.80 // Query: T124764_3 [L=1470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 6184.44 // Query: T183235_1 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 3851.45 // Query: T183235_2 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 3739.81 // Query: T183235_3 [L=902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 4230.28 // Query: T093971_1 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 6237.63 // Query: T093971_2 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.087 13.1 8.7 0.2 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.2 8 50 .. 687 729 .. 686 736 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T093971_2 687 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 729 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 775 (0.0475285); expected 326.1 (0.02) Passed bias filter: 368 (0.0225684); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.67 # Mc/sec: 5213.54 // Query: T093971_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.73 # Mc/sec: 4785.03 // Query: T352679_1 [L=5688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.40s 00:00:02.10 Elapsed: 00:00:00.71 # Mc/sec: 22918.87 // Query: T352679_2 [L=5688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:00.82 # Mc/sec: 19844.39 // Query: T352679_3 [L=5687] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5687 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.35s 00:00:02.00 Elapsed: 00:00:00.79 # Mc/sec: 20594.35 // Query: T315762_1 [L=2425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.66 # Mc/sec: 10511.38 // Query: T315762_2 [L=2425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 12388.42 // Query: T315762_3 [L=2425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.63 # Mc/sec: 11011.92 // Query: T164346_1 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 2257.37 // Query: T164346_2 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 2889.44 // Query: T164346_3 [L=504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 2574.75 // Query: T016496_1 [L=4472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-30 106.5 1.6 1.7e-30 106.0 1.6 1.2 1 Transposase_22 L1 transposable element 2e-07 31.2 0.0 3.3e-07 30.4 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.0 1.6 2e-34 1.7e-30 222 291 .. 3569 3638 .. 3567 3638 .. 0.98 Alignments for each domain: == domain 1 score: 106.0 bits; conditional E-value: 2e-34 HHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHH CS Transposase_22 222 nlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaet 291 nl ++an++iqei+r P+r++s+ra++rhi vr+tkv++k+k+l+ +rekG vt kGkPirltadl aet T016496_1 3569 NLSRQANIQIQEIQRMPQRYSSRRATPRHITVRFTKVEMKEKMLRGAREKGPVTHKGKPIRLTADLLAET 3638 9*******************************************************************98 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.4 0.0 4e-11 3.3e-07 1 94 [. 1065 1213 .. 1065 1292 .. 0.80 Alignments for each domain: == domain 1 score: 30.4 bits; conditional E-value: 4e-11 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++++ ++ +la+++k++d+ v ++qE++ ++ + + + ++ + ++++ gva+l++ + + + T016496_1 1065 LTLNVNG----LNSPIKRHRLANWIKSQDPSVGCIQETHLMCRDTHRFKIkgWRKIYQANGKQKEAGVAILVSDKTDFKptkikrdkeghyimv 1154 699****....8889999*******************887654444333366566778888899999999999999666678899999999999 PP .......................................EEEEEE-SS...-BEEEEEE CS .......................................xxxxxxxxx...xxxxxxxx RF Exo_endo_phos 78 .......................................vivlGDfNa...rlDrilas 94 i++GDfN+ +lDr+ T016496_1 1155 kgsiqqeeltilnicarstgaprfikkvlrglqrdldshTILMGDFNTplsTLDRATRQ 1213 9999999*****************************************88877776433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.70 # Mc/sec: 18276.62 // Query: T016496_2 [L=4472] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-40 137.6 16.9 6.3e-40 137.0 16.9 1.2 1 Transposase_22 L1 transposable element 4.1e-05 23.7 0.0 7.5e-05 22.8 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.016 15.2 1.9 0.03 14.3 1.9 1.4 1 GCN5L1 GCN5-like protein 1 (GCN5L1) 0.16 12.4 7.0 0.32 11.4 7.0 1.4 1 Syntaxin-6_N Syntaxin 6, N-terminal 1.7 8.2 7.8 3.5 7.2 7.8 1.4 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.0 16.9 1.9e-43 6.3e-40 1 216 [. 3382 3563 .. 3382 3563 .. 0.92 Alignments for each domain: == domain 1 score: 137.0 bits; conditional E-value: 1.9e-43 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkekeentekqlkiikek 91 +Gkk+ nrk++nsk +++s+P+ke+sssPat ++++ ++df+elr e++ + ++ +elke+++++ ke++ +k ++e + + T016496_2 3382 MGKKQ---NRKTENSKNQSTSPPPKEHSSSPAT--KQSWTENDFDELRAEGF-R*SNSSELKEEVQTHRKEVKnLEKRLDEWLTRITN----- 3463 79***...*************************..*****************.555789*************9889999995554444..... PP .............XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS Transposase_22 92 qentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile.qslqvi 183 + k k+l+elkt ++el++e++ s+ssr d+leervs ed+++e++re k+rekr+k+ + qslq+i T016496_2 3464 ---AEK----SLKDLVELKTMARELHDECK------------------SFSSRFDQLEERVSVSEDQMNEMKREEKFREKRIKR-N*QSLQEI 3530 ...222....2369****************..................9*********************************97.7779**** PP HHHHTTTEEEEES----TT--HHHHHHHHHHHH CS Transposase_22 184 qdtvkrPnlrliGvdesedeqlkklenilnkii 216 d vkrPn liGv es+ e+++klen+l++ii T016496_2 3531 CDNVKRPNQHLIGVSESDGENGTKLENTLQDII 3563 ********************************8 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.0 2.3e-08 7.5e-05 5 86 .. 3755 3888 .. 3751 4060 .. 0.84 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 2.3e-08 ESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF Exo_endo_phos 5 vngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................... 77 vng + + ++ +la+++k +d+ v ++qE++ ++ +l+ + + ++ + ++++ gva+l++ + + + T016496_2 3755 VNG----PNAPIQRHRLANWIKCQDPSVCCIQETHLTCRDTHRLKIkeRRNIYQGNGKQKKAGVAILVSDKTDFKptkikrdkeghyimvkgsi 3844 555....34568899******************9988877766666776667777788899**********97777888*************** PP ...................................EEEEEE-SS CS ...................................xxxxxxxxx RF Exo_endo_phos 78 ...................................vivlGDfNa 86 i++GDfN+ T016496_2 3845 q*eeltilniyarsigaprfikqvlrdlqrdldshTILMGDFNT 3888 *******************************************9 PP >> GCN5L1 GCN5-like protein 1 (GCN5L1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 1.9 9.3e-06 0.03 48 110 .. 3432 3494 .. 3431 3498 .. 0.92 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 9.3e-06 GCN5L1 48 nqkklekeakalqaqvakfakqtdqWlalvesfnsaLkeiGDvenWaktiekDlksitealen 110 n +l +e+++ +++v++++k+ d+Wl+ + + +++Lk++ +++ a+ + ++ks ++ + + T016496_2 3432 NSSELKEEVQTHRKEVKNLEKRLDEWLTRITNAEKSLKDLVELKTMARELHDECKSFSSRFDQ 3494 77899**************************************************99887765 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 7.0 9.8e-05 0.32 6 84 .. 3436 3519 .. 3434 3522 .. 0.83 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 9.8e-05 Syntaxin-6_N 6 vkeeVq...kslnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrr 84 keeVq k++++le+ +++w +++ + ++s + el+ +eL+ +++s + ++Lee v++ e + +++k +ek ++r T016496_2 3436 LKEEVQthrKEVKNLEKRLDEWlTRITNAEKSlKDLVELKTMARELHDECKSFSSRFDQLEERVSVSEDQMNEMKREEKFREKR 3519 57788733367889999999996698888888889*****************************99999888888777766665 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 7.8 0.0011 3.5 112 187 .. 3434 3513 .. 3394 3521 .. 0.80 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0011 IncA 112 kdleedleslqeelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqrll 187 ++l+e+ + +++e k +e+rl+++ +i +++k++++l + ++l +e+++ s+ ++l e+ + + +++e +r T016496_2 3434 SELKEEVQTHRKEVKNLEKRLDEWLTRITNAEKSLKDLVelktMARELHDECKSFSSRFDQLEERVSVSEDQMNEMKREE 3513 57888888888888888888888888888888888888878887778888888888888888777777777777777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4472 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 668 (0.0409665); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.74u 0.37s 00:00:02.11 Elapsed: 00:00:00.76 # Mc/sec: 16833.73 // Query: T016496_3 [L=4471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-79 268.0 3.9 9.2e-47 159.5 0.4 2.3 2 Transposase_22 L1 transposable element 1.1e-41 142.7 0.8 1.5e-41 142.2 0.8 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.5e-06 26.4 0.3 1e-05 24.9 0.3 1.9 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.5 0.4 1.7e-50 9.2e-47 265 367 .. 924 1028 .. 919 1029 .. 0.96 2 ! 109.3 0.2 3e-35 1.7e-31 291 366 .. 3637 3714 .. 3634 3716 .. 0.97 Alignments for each domain: == domain 1 score: 159.5 bits; conditional E-value: 1.7e-50 HHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T- CS Transposase_22 265 lkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..kn 355 ++ ekG++t kGkPirltadls+etl+arrew+++++ilkek+fq r+++Pakls+i++Geik f dk+ lrd+++trP+lk+llke ++ T016496_3 924 FRNQPEKGQITHKGKPIRLTADLSTETLQARREWGPIFNILKEKNFQSRISHPAKLSFISEGEIKSFTDKQPLRDFVTTRPSLKELLKEaqNM 1016 56778*************************************************************************************9** PP SSXSSXXXXXXX CS Transposase_22 356 erkdryqaleqa 367 erk+ryq+l++ T016496_3 1017 ERKNRYQPLKKR 1028 *********975 PP == domain 2 score: 109.3 bits; conditional E-value: 3e-35 HHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXX CS Transposase_22 291 tlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleq 366 lk rrew+++++ilkek+fqPr++yPakl ++++Geik f k++lrd+++trPalk+llke ++erk+ yq+l++ T016496_3 3637 NLKVRREWGPIFNILKEKNFQPRISYPAKLNFMSEGEIKSFTHKQMLRDFVTTRPALKELLKEalNMERKNWYQPLKN 3714 589*************************************************************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 142.2 0.8 2.8e-45 1.5e-41 1 199 [. 4253 4470 .. 4253 4471 .] 0.97 Alignments for each domain: == domain 1 score: 142.2 bits; conditional E-value: 2.8e-45 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rp sl+++ k+lnk++a++++++++kl++++q gf pg + + ++ ++++++ + k k+++++++D +kaFd+++ ++ l T016496_3 4253 IPKPGrdtteKENFRPTSLMNIHAKILNKILANQIQQHIKKLIHHDQEGFFPGMQGWINIcksiNVMQHIKRTKDKKHMIISIDAEKAFDKIQQPFML 4350 89999999999******************************************999999999988888888888899********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ +g++l+++aDD++++ ++ T016496_3 4351 KTLNKLGIDGMYLKIIITIYDKPTANIILNGQKFEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqtgkEGIKLSLFADDMIVYLEKpI 4448 *******************************************************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BE CS RVT_1 178 eelqelleaveewlkesglkin 199 ++q+l + ++++ k sg+kin T016496_3 4449 VSAQNLFKLISNFSKVSGYKIN 4470 77*******************9 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.3 1.9e-09 1e-05 1 19 [] 1707 1725 .. 1707 1725 .. 0.98 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 1.9e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+++WM+L IILSEi+Q T016496_3 1707 SFVTTWMKLDAIILSEITQ 1725 7*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.53u 0.35s 00:00:01.88 Elapsed: 00:00:00.70 # Mc/sec: 18272.53 // Query: T221038_1 [L=1643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.74 # Mc/sec: 6351.82 // Query: T221038_2 [L=1643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 7581.20 // Query: T221038_3 [L=1643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 7581.20 // Query: T358600_1 [L=2395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.78 # Mc/sec: 8784.22 // Query: T358600_2 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 11046.50 // Query: T358600_3 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.69 # Mc/sec: 9925.84 // Query: T198749_1 [L=9640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.74u 0.42s 00:00:03.16 Elapsed: 00:00:00.96 # Mc/sec: 28727.50 // Query: T198749_2 [L=9639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.92u 0.44s 00:00:03.36 Elapsed: 00:00:00.86 # Mc/sec: 32064.58 // Query: T198749_3 [L=9639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 372 (0.0228137); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.97u 0.39s 00:00:03.36 Elapsed: 00:00:01.00 # Mc/sec: 27575.54 // Query: T069794_1 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 4374.17 // Query: T069794_2 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 5115.55 // Query: T069794_3 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-34 117.2 0.7 3.7e-09 36.9 0.0 5.6 5 Ig_3 Immunoglobulin domain 8.5e-27 93.2 0.0 7.5e-08 32.5 0.1 5.4 5 Ig_2 Immunoglobulin domain 5.8e-16 58.3 0.1 0.00058 19.9 0.0 5.7 5 ig Immunoglobulin domain 1.1e-12 47.7 0.0 3.5e-06 26.9 0.0 4.6 4 I-set Immunoglobulin I-set domain 1.9e-06 27.7 13.6 0.066 13.2 0.0 6.1 5 C2-set_2 CD80-like C2-set immunoglobulin domain 2.8e-06 27.4 0.0 1e-05 25.7 0.0 2.0 2 fn3 Fibronectin type III domain ------ inclusion threshold ------ 0.016 15.2 3.5 12 6.0 0.7 4.5 4 V-set Immunoglobulin V-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 5.9e-09 1.4e-05 1 79 [] 275 347 .. 275 347 .. 0.85 2 ! 36.9 0.0 1.6e-12 3.7e-09 1 79 [] 367 438 .. 367 438 .. 0.91 3 ! 7.3 0.2 0.0029 6.7 16 49 .. 469 500 .. 456 523 .. 0.66 4 ! 10.5 0.0 0.00029 0.68 16 61 .. 553 592 .. 544 611 .. 0.60 5 ! 30.2 0.0 2e-10 4.7e-07 2 79 .] 627 707 .. 626 707 .. 0.83 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 5.9e-09 EEE--CCCSEEEEETTS-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstvvtegesvtLtCeaegnppp.titWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kP++ +++ s eg sv+ tC + + +p t+ W++ + + + ++ ++++ v++++ G Y C+AsN T069794_3 275 KPQVRLSNPSP--VEGASVVATCAVREGTEPvTFAWQHRAPR--GLGEA---LVGVTEPLFQLDPVNRTHLGWYMCSASN 347 8****888777..5***********8888888******9985..32223...46888899*******************9 PP == domain 2 score: 36.9 bits; conditional E-value: 1.6e-12 EEE--CCCSEEE.....EETTS-EEE----EEES--EEEEEE..-...TTSS-EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 1 kPvItvppsstv.....vtegesvtLtCeaegnppptitWykngkklssnstsssissegssssLtisnvtksdsGtYtCvAsN 79 kPvIt +p + + e e+vtL+C a++npp ++ W+++ + +++t + +++i ++ + ++G YtC A+N T069794_3 367 KPVITMEPLGLTeegfwASEREEVTLSCLAASNPPSHYVWLRDHT---QVHT---------GPTYVIARAGRVHTGLYTCLARN 438 8****999998889999*************999999*********...5334.........4699******************9 PP == domain 3 score: 7.3 bits; conditional E-value: 0.0029 TS-EEE----.EEES--EEEEEE..-...TTSS-E CS Ig_3 16 gesvtLtCea.egnppptitWykngkklssnstss 49 e vtL C + +g pp +++W ++ +++t + T069794_3 469 PEAVTLLCAWpGGLPPAQLQWEGPQG---PGPTAP 500 468*******5555555*****9999...555553 PP == domain 4 score: 10.5 bits; conditional E-value: 0.00029 TS.-EEE----EEES--.EEEEEE..-...TTSS-EESSEEEETTEEE CS Ig_3 16 ge.svtLtCeaegnppp.titWykngkklssnstsssissegssssLt 61 g+ ++L+Ce+ g+ pp t+ W+ ++++ + ++ss ++ T069794_3 553 GDqFIMLSCEWPGGEPPaTLGWLDEQQQ--PL--G----GSSSSMAVH 592 442567*****6666666*******995..31..1....122333333 PP == domain 5 score: 30.2 bits; conditional E-value: 2e-10 EE--CCCSEEEEETTS-EEE----EEES--.EEEEEE..-....TTSS-EE....SSEEEETTEEEESS--GGG.-EEEEEEEE- CS Ig_3 2 PvItvppsstvvtegesvtLtCeaegnppp.titWykngkk.lssnstsss....issegssssLtisnvtksd.sGtYtCvAsN 79 P++ v + ++v eg ++ L+C+ g+ pp ++ W+ +++ + ++ + + eg + +L i ++++ + +GtY+CvA+N T069794_3 627 PQLDVAEPRVSVLEGGEAWLECSLRGGTPPaQLLWLGPQQQkVDPG----TsgfmLHPEGAQLRLGIYDADPAHhRGTYQCVARN 707 677766777789************7777777********9743332....2345688999999********9988*********9 PP >> Ig_2 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.7 0.0 0.00041 0.97 1 67 [. 275 349 .. 275 359 .. 0.80 2 ! 32.5 0.1 3.2e-11 7.5e-08 1 74 [. 367 447 .. 367 453 .. 0.86 3 ! 11.0 0.0 0.00017 0.39 15 66 .. 470 525 .. 457 531 .. 0.80 4 ! 11.4 0.0 0.00013 0.29 11 64 .. 550 610 .. 541 619 .. 0.78 5 ! 21.1 0.0 1.1e-07 0.00026 2 79 .] 627 720 .. 626 720 .. 0.74 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00041 Ig_2 1 kpvlrpsptvvtegspvtLtCsas.gnpppkyqwykgg.....eain.ssqn.ffinavsaedsgtYtCrasntk 67 kp+ r s+ eg +v tC++ g +p+++ w++ ea+ + f + v+ ++ g Y C+asn+ T069794_3 275 KPQVRLSNPSPVEGASVVATCAVReGTEPVTFAWQHRAprglgEALVgVTEPlFQLDPVNRTHLGWYMCSASNSV 349 688888888889**********9989999******88887777665543433466788**************964 PP == domain 2 score: 32.5 bits; conditional E-value: 3.2e-11 Ig_2 1 kpvlrpsp...tv....vtegspvtLtCsasgnpppkyqwykggeainssqnffinavsaedsgtYtCrasntkgsevsrp 74 kpv++ +p t+ +e+++vtL+C a +npp y w ++++ + +++ ++i ++ + g YtC a+n++ +++++ T069794_3 367 KPVITMEPlglTEegfwASEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYVIARAGRVHTGLYTCLARNSYLDTRTQT 447 6888888877655777789*********************************888*****************987665544 PP == domain 3 score: 11.0 bits; conditional E-value: 0.00017 Ig_2 15 spvtLtCsas.gnpppkyqwykggeainssqn...ffinavsaedsgtYtCrasnt 66 + vtL C+++ g pp+++qw + + ++ ++ + a+++ ++ +tC+ +++ T069794_3 470 EAVTLLCAWPgGLPPAQLQWEGPQGPGPTAPSnvtWSHAAAQLPSGSVFTCTGQHP 525 789*******77888*******99999988775443447788999999***98875 PP == domain 4 score: 11.4 bits; conditional E-value: 0.00013 Ig_2 11 vtegspv.tLtCsas.gnpppkyqwykgg.eainssqn...ffinavsaedsgt.YtCras 64 t g+ + L+C+++ g pp+++ w + +++ s + +++++++++ +g+ +tCr + T069794_3 550 ATMGDQFiMLSCEWPgGEPPATLGWLDEQqQPLGGSSSsmaVHLLQAQEDLAGReFTCRGT 610 5556555378*****667779****9777699995444466788**************975 PP == domain 5 score: 21.1 bits; conditional E-value: 1.1e-07 Ig_2 2 pvlrpsp..tvvtegspvtLtCsas.gnpppkyqwykgg.eainssqn..ffina..........vs.aedsgtYtCrasntkgsevsrpveltv 79 p+l++ v eg + +L Cs g pp+++ w + + + ++++ +++++ ++ a+++gtY+C+a+n +++ +s++v l+v T069794_3 627 PQLDVAEprVSVLEGGEAWLECSLRgGTPPAQLLWLGPQqQKVDPGTSgfMLHPEgaqlrlgiydADpAHHRGTYQCVARN-AVGNSSQSVLLEV 720 7788444244589999*******8878999******888777776666654444455555565446689************.8899999987765 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 3e-06 0.007 10 77 .. 287 348 .. 281 351 .. 0.94 2 ! 9.1 0.1 0.00058 1.3 9 77 .. 385 439 .. 383 449 .. 0.84 3 ? -2.3 0.0 2.1 4.8e+03 67 76 .. 514 524 .. 500 529 .. 0.61 4 ? 4.6 0.0 0.014 34 16 76 .. 559 611 .. 552 616 .. 0.88 5 ! 19.9 0.0 2.5e-07 0.00058 2 82 .. 632 713 .. 631 717 .. 0.88 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 3e-06 TTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 10 eGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 eG s+ tC v+++t+p+++ W++ + ++ ++ +++++v + + G Y+C ++ns T069794_3 287 EGASVVATCAVREGTEPVTFAWQHRAPRGLGEAL------VGVTEPLFQLDPVNRTHLGWYMCSASNS 348 6889999***************************......999999********************98 PP == domain 2 score: 9.1 bits; conditional E-value: 0.00058 ETTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-EEEEEEEEET CS ig 9 leGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaGtYtCevnns 77 +e e +tL+C + +++p ++ W ++ ++ +++ + i ++ + ++G YtC + ns T069794_3 385 SEREEVTLSCLAA-SNPPSHYVWLRDHTQVHTGPT-------------YVIARAGRVHTGLYTCLARNS 439 67899********.************999999988.............777777777777787777775 PP == domain 3 score: -2.3 bits; conditional E-value: 2.1 -E.EEEEEEEE CS ig 67 aG.tYtCevnn 76 +G +tC++++ T069794_3 514 SGsVFTCTGQH 524 34456666666 PP == domain 4 score: 4.6 bits; conditional E-value: 0.014 EEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-E.EEEEEEEE CS ig 16 LtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaG.tYtCevnn 76 L+C+ +++p+++ W e+q+ ++ +s +++ +++e+ aG ++tC++ + T069794_3 559 LSCEWPGGEPPATLGWLDEQQQPLGGSS---------SSMAVHLLQAQEDLAGrEFTCRGTH 611 7888888899999999999999999988.........9999*****************9988 PP == domain 5 score: 19.9 bits; conditional E-value: 2.5e-07 CESEEEEETTS-EEEEEEEESSCCTSEEEEEESSCSSSEEEEEEEEETTCEEEEEEEESSSTGGG-E.EEEEEEEETTEEEE CS ig 2 akplvlvleGesatLtCsvstqtkptdvtWkkegqtkiesqkvvkegnrrkgssslliskvteedaG.tYtCevnnsgssvt 82 a p v+vleG+ a+L Cs + +t+p+++ W +q+k + ++ + + + +l i + + ++ tY C++ n+ ++++ T069794_3 632 AEPRVSVLEGGEAWLECSLRGGTPPAQLLWLGPQQQKVDPGTSGFMLHPEGAQLRLGIYDADPAHHRgTYQCVARNAVGNSS 713 567899**********************************9977777788888899999999988766******99999876 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.7 0.0 0.0061 14 14 82 .. 287 352 .. 277 361 .. 0.77 2 ! 8.7 0.0 0.00071 1.7 13 86 .. 385 447 .. 380 453 .. 0.70 3 ? -3.1 0.0 3.4 7.9e+03 19 41 .. 558 582 .. 550 592 .. 0.68 4 ! 26.9 0.0 1.5e-09 3.5e-06 6 90 .] 632 720 .. 627 720 .. 0.87 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0061 TTS-EEEEEEE.ECSSS-EEEEEET.TCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSEEE CS I-set 14 eGesvelectv.eGepepsvsWakd.gselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsagka 82 eG sv +c v eG+++ ++ W+++ + l + v v+e + ++ v++ G Y c a+ns+ + T069794_3 287 EGASVVATCAVrEGTEPVTFAWQHRaPRGLGE---ALVGVTE--PLFQLDPVNRTHLGWYMCSASNSVNRL 352 78889999999446788889999985555553...4555555..67999******************8765 PP == domain 2 score: 8.7 bits; conditional E-value: 0.00071 ETTS-EEEEEEEECSSS-EEEEEETTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEEEETSEEEEEEE CS I-set 13 seGesvelectveGepepsvsWakdgselkssqrvkvtveeaeytLtIsnvevsDeGkYtckatnsagkaeaka 86 se e+v+l+c + +p+ + W++d +++++ ++ I ++ + +G Ytc a+ns+ +++ T069794_3 385 SEREEVTLSCLAASNPPSHYVWLRDHTQVHTGPTYV-----------IARAGRVHTGLYTCLARNSYLDTRTQT 447 677889999999999999999999988888765555...........555557778999999999943333333 PP == domain 3 score: -3.1 bits; conditional E-value: 3.4 EEEEEEE.CSSS-EEEEEET.TCB- CS I-set 19 electve.GepepsvsWakd.gsel 41 l+c+ Gep+ + W+ + +++l T069794_3 558 MLSCEWPgGEPPATLGWLDEqQQPL 582 5677765157889999999855555 PP == domain 4 score: 26.9 bits; conditional E-value: 1.5e-09 S-CEEEEETTS-EEEEEEEECS.SS-EEEEEET.TCB-ST.SSSEEEEEETTEEEEEESSB-GG.GGEEEEEEEEETSEEEEEEEEEEE CS I-set 6 klkdvevseGesvelectveGe.pepsvsWakd.gselks.sqrvkvtveeaeytLtIsnvevs.DeGkYtckatnsagkaeakaeLkV 90 +v v eG ++ lec+ +G p+ + W+ ++++ + ++ + ++ e+a+ +L I++++++ G+Y+c+a+n +g++++++ L+V T069794_3 632 AEPRVSVLEGGEAWLECSLRGGtPPAQLLWLGPqQQKVDPgTSGFMLHPEGAQLRLGIYDADPAhHRGTYQCVARNAVGNSSQSVLLEV 720 556899*************9744999******9888898877889999999**********986268******************9987 PP >> C2-set_2 CD80-like C2-set immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.1 0.1 0.0022 5.1 6 37 .. 276 310 .. 272 319 .. 0.81 2 ? 3.9 0.0 0.023 53 9 42 .. 381 413 .. 368 445 .. 0.76 3 ? 2.8 1.1 0.047 1.1e+02 17 40 .. 471 494 .. 457 530 .. 0.81 4 ? 4.1 0.4 0.019 45 19 42 .. 558 581 .. 548 613 .. 0.78 5 ! 13.2 0.0 2.8e-05 0.066 4 41 .. 633 667 .. 630 683 .. 0.84 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0022 SSSEEETT...-SEEEEEEEEEEEEBS--EEEEEE CS C2-set_2 6 naslleae...eneevvatCvsaggkPapqitWyl 37 ++ +l+++ e++ vvatC +++g +++ +W+ T069794_3 276 PQVRLSNPspvEGASVVATCAVREGTEPVTFAWQH 310 44555555578899*******************86 PP == domain 2 score: 3.9 bits; conditional E-value: 0.023 EEETT-SEEEEEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 9 lleaeeneevvatCvsaggkPapqitWylngkpl 42 +a e eev++ C a ++P+ + W+++ ++ T069794_3 381 GFWASEREEVTLSC-LAASNPPSHYVWLRDHTQV 413 34444899******.6778999******998877 PP == domain 3 score: 2.8 bits; conditional E-value: 0.047 EEEEEEEEEEEBS--EEEEEETTE CS C2-set_2 17 evvatCvsaggkPapqitWylngk 40 v++ C gg P++q++W + + T069794_3 471 AVTLLCAWPGGLPPAQLQWEGPQG 494 567789999**********87555 PP == domain 4 score: 4.1 bits; conditional E-value: 0.019 EEEEEEEEEBS--EEEEEETTEEE CS C2-set_2 19 vatCvsaggkPapqitWylngkpl 42 + C gg+P++++ W+ + ++ T069794_3 558 MLSCEWPGGEPPATLGWLDEQQQP 581 56788899*********9887764 PP == domain 5 score: 13.2 bits; conditional E-value: 2.8e-05 EESSSEEETT-SEEEEEEEEEEEEBS--EEEEEETTEE CS C2-set_2 4 epnaslleaeeneevvatCvsaggkPapqitWylngkp 41 ep s le+ e ++C+ +gg P++q+ W++ ++ T069794_3 633 EPRVSVLEGG---EAWLECSLRGGTPPAQLLWLGPQQQ 667 6777888888...999****************987766 PP >> fn3 Fibronectin type III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 2.5 5.9e+03 17 35 .. 486 503 .. 485 511 .. 0.66 2 ! 25.7 0.0 4.4e-09 1e-05 1 85 [] 724 815 .. 724 815 .. 0.86 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 2.5 EEEEE-CSSSSSTECEEEE CS fn3 17 tvsWeppkdgggpitgYev 35 +++We p +g gp +v T069794_3 486 QLQWEGP-QGPGPTAPSNV 503 7899999.46666555455 PP == domain 2 score: 25.7 bits; conditional E-value: 4.4e-09 TSBSEEEEEEE....TTSEEEEEEE-CSSSSSTECEEEEEEEETTSSS.....TEEEEEECSTCSEEEEESSSTTEEEEEEEEEEETTEEEEEE CS fn3 1 saPsnlsvsev....tstsltvsWeppkdgggpitgYeveyrekgsee.....ewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 +aP n+++s ++++++W g g++tg+ v+ + + + e+ ++ + ++ l gL pg Y +r+ a+n+++ g++s T069794_3 724 PAPPNVTISRLtygrHRREVQLQWAIL--GPGNLTGFLVQRKASALGPgagawETAASDIEPESRGRRLGGLDPGVLYAFRILALNHHTAGHPS 815 6899999999977777899********..9***********777666677876555555777777**************************998 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 2.9 6.6e+03 77 97 .. 330 349 .. 327 358 .. 0.73 2 ? 6.0 0.7 0.0049 12 7 52 .. 383 428 .. 378 453 .. 0.55 3 ? -1.0 0.0 0.77 1.8e+03 4 23 .. 634 653 .. 632 671 .. 0.76 4 ? 2.7 0.0 0.053 1.2e+02 84 108 .. 697 720 .. 663 721 .. 0.71 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 2.9 ESSESGGG-EEEEEEEESSSE CS V-set 77 iqnlqlsDsGtYfCavvssge 97 + +++ + G Y C+ s++ T069794_3 330 LDPVNRTHLGWYMCSA-SNSV 349 677889999*****94.4444 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0049 EEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS..CEEEEEEEETT.T CS V-set 7 tvaeGesvtLsCtlssseseeslsiyWyrqppgk..epeelilyysn.s 52 +++e e+vtLsC s+ + + W+r+ ++ +p+++i++ + + T069794_3 383 WASEREEVTLSCLAASN---PPSHYVWLRDHTQVhtGPTYVIARAGRvH 428 66777777777755554...66677777777666666777666655443 PP == domain 3 score: -1.0 bits; conditional E-value: 0.77 SEEEEETTSEEEEEEEESSS CS V-set 4 ksvtvaeGesvtLsCtlsss 23 + v+v eG+++ L C+l T069794_3 634 PRVSVLEGGEAWLECSLRGG 653 56999**********98865 PP == domain 4 score: 2.7 bits; conditional E-value: 0.053 G-EEEEEEEESSSEEEEEEEEEEEE CS V-set 84 DsGtYfCavvssgegvfgsgtrLtV 108 + GtY+C + g++++ + L+V T069794_3 697 HRGTYQCV-ARNAVGNSSQSVLLEV 720 57******.7888888888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 4434.29 // Query: T222477_1 [L=311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.61 # Mc/sec: 1458.55 // Query: T222477_2 [L=311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.61 # Mc/sec: 1458.55 // Query: T222477_3 [L=311] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (311 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 1458.55 // Query: T124924_1 [L=255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.54 10.4 2.3 60 3.9 0.0 3.9 3 Utp12 Dip2/Utp12 Family Domain annotation for each model (and alignments): >> Utp12 Dip2/Utp12 Family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 0.0 0.0037 60 4 33 .. 52 81 .. 50 86 .. 0.89 2 ? 2.0 0.6 0.014 2.2e+02 9 32 .. 158 181 .. 131 191 .. 0.70 3 ? 0.8 0.0 0.033 5.5e+02 13 33 .. 182 202 .. 177 213 .. 0.86 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.0037 Utp12 4 elleevlekippsdientvlrLpfsyvlkL 33 +l+ + +++p+s i+ + ++p+s+++ L T124924_1 52 SLILTLTHSRPHSFIPALIHSFPPSFIPSL 81 6777778899****************9987 PP == domain 2 score: 2.0 bits; conditional E-value: 0.014 Utp12 9 vlekippsdientvlrLpfsyvlk 32 +++ p+s i++ + ++p+s+++ T124924_1 158 LIHSLPHSFIPSLIHSFPPSLIPS 181 345566666666777777666665 PP == domain 3 score: 0.8 bits; conditional E-value: 0.033 Utp12 13 ippsdientvlrLpfsyvlkL 33 p+s i++ + ++p+s++++L T124924_1 182 LPHSFIPSLIHSFPPSFIPTL 202 578899999999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 1459.02 // Query: T124924_2 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 1252.85 // Query: T124924_3 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 14.6 8.4 9.5 6.4 0.1 4.9 5 Utp12 Dip2/Utp12 Family Domain annotation for each model (and alignments): >> Utp12 Dip2/Utp12 Family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.1 0.0039 64 3 33 .. 13 43 .. 11 57 .. 0.82 2 ? 6.4 0.1 0.00058 9.5 12 37 .. 66 91 .. 62 100 .. 0.58 3 ? 2.4 0.0 0.01 1.7e+02 14 36 .. 112 134 .. 106 150 .. 0.60 4 ? -0.1 0.0 0.061 1e+03 15 33 .. 170 188 .. 163 208 .. 0.57 5 ? 2.7 0.1 0.0087 1.4e+02 10 38 .. 217 245 .. 214 251 .. 0.76 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0039 Utp12 3 eelleevlekippsdientvlrLpfsyvlkL 33 ++l+ + ++ pps+i++ ++p+s+++ L T124924_3 13 HSLIPSLTHSFPPSLIPSLTHSFPPSLIPSL 43 5666677788899999999999999999987 PP == domain 2 score: 6.4 bits; conditional E-value: 0.00058 Utp12 12 kippsdientvlrLpfsyvlkLLefl 37 ++p+s i++ + ++p+s+++ L++ l T124924_3 66 SRPHSFIPTLIHSFPPSLIPSLIHSL 91 55666666666666666666665544 PP == domain 3 score: 2.4 bits; conditional E-value: 0.01 Utp12 14 ppsdientvlrLpfsyvlkLLef 36 pps+i++ ++p+s+++ L++ T124924_3 112 PPSLIHSFPHSFPPSLISSLIHS 134 55555555555666555555543 PP == domain 4 score: -0.1 bits; conditional E-value: 0.061 Utp12 15 psdientvlrLpfsyvlkL 33 +s i++ +Lp+s+++ L T124924_3 170 HSFIPSLPHSLPPSFIHSL 188 5555555555555555554 PP == domain 5 score: 2.7 bits; conditional E-value: 0.0087 Utp12 10 lekippsdientvlrLpfsyvlkLLefla 38 +++ pps+i + + ++p s+ + L++fl T124924_3 217 IHSLPPSLILSLIHSIPHSFPSSLIHFLP 245 56778888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.65 # Mc/sec: 1117.92 // Query: T291614_1 [L=2178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 9030.27 // Query: T291614_2 [L=2178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.32 10.4 2.7 0.29 10.5 1.2 1.7 2 DUF331 Domain of unknown function Domain annotation for each model (and alignments): >> DUF331 Domain of unknown function # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.41 6.7e+03 15 22 .. 424 431 .. 424 432 .. 0.86 2 ? 10.5 1.2 1.8e-05 0.29 18 34 .. 1748 1764 .. 1743 1766 .. 0.83 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.41 DUF331 15 pLFrsRvE 22 p+Fr+R E T291614_2 424 PIFRQRWE 431 78****98 PP == domain 2 score: 10.5 bits; conditional E-value: 1.8e-05 DUF331 18 rsRvEkakKGKGSYqRk 34 ++R ++kKGKG Y+R+ T291614_2 1748 QKRKLRPKKGKGAYRRS 1764 67889***********6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 102 (0.00625537); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.62 # Mc/sec: 10049.82 // Query: T291614_3 [L=2177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0051 17.3 0.0 0.074 13.5 0.0 2.4 2 Ig_3 Immunoglobulin domain ------ inclusion threshold ------ 0.042 13.8 0.0 0.16 11.9 0.0 1.8 2 I-set Immunoglobulin I-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.0 0.084 6.8e+02 31 78 .. 993 1040 .. 984 1040 .. 0.72 2 ! 13.5 0.0 9.1e-06 0.074 49 79 .] 1966 1996 .. 1950 1996 .. 0.81 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.084 -EEEEEE..-...TTSS-EE...SSEEEETTEEEESS--GGG-EEEEEEEE CS Ig_3 31 ptitWykngkklssnstsss...issegssssLtisnvtksdsGtYtCvAs 78 p +W + g+ s+ + s + + s + + +ti+++++s +G+ C+As T291614_3 993 PWPRWHYTGS--SPLRRS-QwetDISFDVKKGFTIHQAQASLAGSLLCMAS 1040 5557999999..343333.2465566667777****************997 PP == domain 2 score: 13.5 bits; conditional E-value: 9.1e-06 EESSEEEETTEEEESS--GGG-EEEEEEEE- CS Ig_3 49 ssissegssssLtisnvtksdsGtYtCvAsN 79 +s+ +++ +++L+++ ++d+G+YtC A+N T291614_3 1966 ESQVQQEAEGTLYVEGTWARDAGVYTCWATN 1996 335678999*********************9 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.36 3e+03 47 76 .. 1014 1040 .. 993 1051 .. 0.68 2 ? 11.9 0.0 1.9e-05 0.16 51 90 .] 1970 2009 .. 1952 2010 .. 0.76 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.36 EEEEEETTEEEEEESSB-GGGGEEEEEEEE CS I-set 47 vkvtveeaeytLtIsnvevsDeGkYtckat 76 ++++v + +tI+++++s +G+ c a+ T291614_3 1014 ISFDV---KKGFTIHQAQASLAGSLLCMAS 1040 33333...559************9999986 PP == domain 2 score: 11.9 bits; conditional E-value: 1.9e-05 EETTEEEEEESSB-GGGGEEEEEEEEETSEEEEEEEEEEE CS I-set 51 veeaeytLtIsnvevsDeGkYtckatnsagkaeakaeLkV 90 ++eae tL ++ ++D+G Ytc atn g+ a+++++V T291614_3 1970 QQEAEGTLYVEGTWARDAGVYTCWATNLQGTGLATTHVHV 2009 233688*********************9776666655554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.62 # Mc/sec: 10045.20 // Query: T324659_1 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-13 49.8 142.9 3.4e-05 23.8 0.2 17.2 12 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.2 2.1e-09 3.4e-05 29 50 .] 1 22 [. 1 22 [. 0.98 2 ! 16.5 14.9 4e-07 0.0065 1 50 [] 27 88 .. 27 88 .. 0.88 3 ? -2.2 0.8 0.28 4.6e+03 4 11 .. 156 163 .. 156 165 .. 0.90 4 ? -3.1 3.2 0.52 8.5e+03 20 20 .. 194 194 .. 172 246 .. 0.57 5 ? -4.0 4.1 1 1.6e+04 4 14 .. 328 351 .. 328 391 .. 0.63 6 ? 0.2 0.3 0.049 8.1e+02 6 23 .. 550 580 .. 547 601 .. 0.81 7 ? -6.2 11.0 1 1.6e+04 19 38 .. 805 824 .. 781 839 .. 0.72 8 ! 18.0 6.2 1.3e-07 0.0022 1 26 [. 853 877 .. 853 879 .. 0.96 9 ! 4.0 0.1 0.0032 53 2 15 .. 887 899 .. 887 906 .. 0.79 10 ! 13.5 0.7 3.5e-06 0.056 1 13 [. 907 919 .. 907 933 .. 0.92 11 ! 18.7 9.4 8.2e-08 0.0013 1 37 [. 939 987 .. 939 990 .. 0.97 12 ! 18.6 14.7 9.1e-08 0.0015 2 38 .. 985 1065 .. 985 1081 .. 0.94 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 2.1e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp+A++Gp+l++a+L+ P++CL T324659_1 1 LPAAFVGPELSQAKLFGPTYCL 22 8********************9 PP == domain 2 score: 16.5 bits; conditional E-value: 4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 +gpA a ++pLq ++l+++glsrp++ + Gp++ p +gL+ P sCL T324659_1 27 TGPALAVEQPLQ-DPLLPPRGLSRPISHPHGGLLGPNPclppgspraghflPHGGLLMPNSCL 88 8***********.7889999999999988888888888888888888888899*********8 PP == domain 3 score: -2.2 bits; conditional E-value: 0.28 DUF4705 4 APasrrpL 11 A as++pL T324659_1 156 ALASQWPL 163 89*****9 PP == domain 4 score: -3.1 bits; conditional E-value: 0.52 DUF4705 20 s 20 T324659_1 194 A 194 1 PP == domain 5 score: -4.0 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa.............p 14 A as++pL p T324659_1 328 ALASHWPLPR*etsa*apcltpaP 351 788999996566666655555441 PP == domain 6 score: 0.2 bits; conditional E-value: 0.049 DUF4705 6 asrrpLqa.............paslqasgls 23 as++pL p++l+ +g s T324659_1 550 ASHWPLPR*emsa*apcltlaPPTLREVGVS 580 8999998888888888888888888888876 PP == domain 7 score: -6.2 bits; conditional E-value: 1 DUF4705 19 asglsrpsaqLpvAsaGpkl 38 ++ + r+ ++Lp+As+ p++ T324659_1 805 SRHPLRAQLFLPAASPRPTP 824 44566777777777777766 PP == domain 8 score: 18.0 bits; conditional E-value: 1.3e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq +++l++ g srp+ T324659_1 853 PGPGQASRWPLQ-AQLLPSDGVSRPP 877 9***********.************9 PP == domain 9 score: 4.0 bits; conditional E-value: 0.0032 DUF4705 2 gpAPasrrpLqapa 15 gp asrrpLqa + T324659_1 887 GPSCASRRPLQA-Q 899 8999*******4.4 PP == domain 10 score: 13.5 bits; conditional E-value: 3.5e-06 DUF4705 1 PgpAPasrrpLqa 13 PgpAPasrrpL+a T324659_1 907 PGPAPASRRPLHA 919 9***********6 PP == domain 11 score: 18.7 bits; conditional E-value: 8.2e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpk 37 PgpAP srrpLq pas+++ + +ps+ L +A+ Gp T324659_1 939 PGPAPSSRRPLQVqnflesaspgpasPASQWPL-SAQPSSWLSAAFLGPA 987 9********************************.89*************7 PP == domain 12 score: 18.6 bits; conditional E-value: 9.1e-08 DUF4705 2 gpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpkl 38 gpA +++pLqa p +l+ g+++ps++LpvAs Gp T324659_1 985 GPAFDFWWPLQAqnltssrplqarlpas*rpararprlhsglstps*lsphcslpsPKLLPFGGFGSPSSCLPVASLGPAH 1065 89999999999999999999999********************************************************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 6067.52 // Query: T324659_2 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 6254.21 // Query: T324659_3 [L=1420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-24 83.4 43.8 3.6e-18 65.4 10.4 17.0 17 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.3 7.5 0.0055 90 7 43 .. 11 47 .. 5 54 .. 0.83 2 ? 2.1 11.0 0.013 2.2e+02 2 27 .. 38 77 .. 37 84 .. 0.69 3 ? -6.9 9.3 1 1.6e+04 4 44 .. 112 155 .. 112 181 .. 0.63 4 ? -3.2 1.8 0.56 9.1e+03 6 18 .. 238 256 .. 235 279 .. 0.60 5 ? -0.4 0.7 0.075 1.2e+03 13 41 .. 333 362 .. 298 364 .. 0.76 6 ? -3.8 4.6 0.89 1.5e+04 5 42 .. 361 401 .. 357 405 .. 0.77 7 ? -2.5 1.7 0.34 5.6e+03 4 17 .. 447 472 .. 447 494 .. 0.65 8 ? -4.2 1.4 1 1.6e+04 29 42 .. 516 529 .. 508 541 .. 0.61 9 ? -2.4 0.2 0.33 5.3e+03 13 35 .. 553 576 .. 547 585 .. 0.63 10 ? -2.4 1.5 0.33 5.5e+03 6 14 .. 582 607 .. 578 633 .. 0.58 11 ! 9.3 10.9 7e-05 1.1 18 50 .] 793 825 .. 778 825 .. 0.86 12 ! 27.8 4.0 1.2e-10 1.9e-06 16 50 .] 824 858 .. 823 858 .. 0.95 13 ! 65.4 10.4 2.2e-22 3.6e-18 1 50 [] 863 912 .. 863 912 .. 0.99 14 ! 14.8 6.5 1.4e-06 0.022 20 50 .] 935 966 .. 933 966 .. 0.90 15 ! 3.3 1.2 0.0053 87 27 46 .. 964 985 .. 963 987 .. 0.75 16 ! 2.9 0.7 0.0069 1.1e+02 29 50 .] 989 1011 .. 989 1011 .. 0.86 17 ! 21.3 13.6 1.3e-08 0.0002 3 39 .. 1041 1076 .. 1016 1083 .. 0.77 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.0055 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 s + L+ + +l+ gl rps++ AsaGp l +++ L T324659_3 11 SSQALR-AHLLPLGGLYRPSSGCRTASAGPALaSQGPL 47 567799.999********************99865544 PP == domain 2 score: 2.1 bits; conditional E-value: 0.013 DUF4705 2 gpAPasrrpLqa..............paslqasglsrpsa 27 gpA as+ pLqa pas q+ + p++ T324659_3 38 GPALASQGPLQAhlspprrppgakslPASRQPACGPLPPS 77 9**********88887777666666655544444444444 PP == domain 3 score: -6.9 bits; conditional E-value: 1 DUF4705 4 APasrrpLqa......paslqasglsrpsaqLpvAsaGpklppagLs 44 A as+rpL ++ l p + + +++a+p+++++++s T324659_3 112 ALASHRPLPH*ersa*APCLTLA---PPTLIPCLTPAPPTPREVSMS 155 67888888778888884444443...555555555555555555543 PP == domain 4 score: -3.2 bits; conditional E-value: 0.56 DUF4705 6 asrrpLqa......paslq 18 as++pL ++sl T324659_3 238 ASHWPLPP*erkv*APSLT 256 8999996566666655444 PP == domain 5 score: -0.4 bits; conditional E-value: 0.075 DUF4705 13 apaslqasglsr.psaqLpvAsaGpklppa 41 apa+l+ +g s p ++ A +Gp p a T324659_3 333 APATLRDVGVSPlPHTGPSHAERGPHEPLA 362 399999999884488899999999987765 PP == domain 6 score: -3.8 bits; conditional E-value: 0.89 DUF4705 5 PasrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as++pL ++ l + p + + +++ +p+l+++ T324659_3 361 LASHWPLPP*qrlv*APCLTPA---PPMLTPCLTPDPPTLREVR 401 5999999778888888888887...7788888888888887775 PP == domain 7 score: -2.5 bits; conditional E-value: 0.34 DUF4705 4 APasrrpLqa............pasl 17 A as+rpL p++l T324659_3 447 ALASHRPLPRrevsvtpcltlvPPTL 472 78999999656666655555553333 PP == domain 8 score: -4.2 bits; conditional E-value: 1 DUF4705 29 LpvAsaGpklppag 42 + +++a+p+ ++++ T324659_3 516 PCLTPAPPTQREVS 529 44555555555444 PP == domain 9 score: -2.4 bits; conditional E-value: 0.33 DUF4705 13 apaslqasglsr.psaqLpvAsaG 35 ap++l+ +g+s p ++ A +G T324659_3 553 APPTLRNVGMSPlPHTGPSHAERG 576 377777777774255555555555 PP == domain 10 score: -2.4 bits; conditional E-value: 0.33 DUF4705 6 asrrpLqa.................p 14 as++pL + T324659_3 582 ASHWPLPP*ersv*apcltlapptlT 607 88888865666666555555543330 PP == domain 11 score: 9.3 bits; conditional E-value: 7e-05 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +++glsrp Lp++s+Gp lpp s P s L T324659_3 793 PQVGLSRPTCSLPASSPGPALPPSCVSTPDSGL 825 899**************************9987 PP == domain 12 score: 27.8 bits; conditional E-value: 1.2e-10 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T324659_3 824 GLPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 858 5899*****************************87 PP == domain 13 score: 65.4 bits; conditional E-value: 2.2e-22 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+rr+Lqap+ l+++g+srp+++Lp+AsaGp++p++gLsrPss+L T324659_3 863 PGSAPALRRRLQAPNGLRSVGSSRPILRLPAASAGPNRPEVGLSRPSSSL 912 9***********************************************98 PP == domain 14 score: 14.8 bits; conditional E-value: 1.4e-06 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPs.sCL 50 +gl ps+ L +As+G klp ++LsrPs sCL T324659_3 935 VGLPGPSSVLSAASPGAKLPRVSLSRPSlSCL 966 67888**********************96776 PP == domain 15 score: 3.3 bits; conditional E-value: 0.0053 DUF4705 27 aqLpvAsaGpkl..ppagLsrP 46 ++LpvAs Gp gL rP T324659_3 964 SCLPVASFGPAQlmALSGLPRP 985 7*********865555566666 PP == domain 16 score: 2.9 bits; conditional E-value: 0.0069 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T324659_3 989 LLVASSGPELdLQSAFAGPASCL 1011 789*******8677888999998 PP == domain 17 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklp 39 APa+r+ q +++l+asgl rps++L++A++Gp++p T324659_3 1041 KAPAFRWLWQ-SQLLPASGLFRPSSFLTMAFPGPVFP 1076 4666666444.************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 6155.12 // Query: T071522_1 [L=1376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.9 6.6 12.6 9.2 6.0 12.6 1.2 1 SPX SPX domain Domain annotation for each model (and alignments): >> SPX SPX domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 12.6 0.00056 9.2 74 134 .. 490 588 .. 431 612 .. 0.49 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00056 SPX 74 esgksaadesssepkdeae...slprrsplsrssrssssygglvssppsansssssddssess...................................s 134 +s+ s+ ++sss+++ +++ s++++sp+ + s+ssss ++++s+++s++ss+ss+++ +++ T071522_1 490 SSSCSSPPSSSSTSSFSPSssfSPSSSSPSPSPSSSSSSLSSSSSPSSSPSSSHSSSSPLPPPlpppppltpplllpplppplflllllplpsppllpP 588 222222222222222222222222222222222222222222222222222222222222222334556666666666666666666666665555441 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 565 (0.0346498); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 5788.97 // Query: T071522_2 [L=1376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.26s 00:00:01.16 Elapsed: 00:00:00.54 # Mc/sec: 7289.82 // Query: T071522_3 [L=1375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.65 # Mc/sec: 6051.76 // Query: T260447_1 [L=3255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.65 # Mc/sec: 14326.16 // Query: T260447_2 [L=3255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-10 39.0 0.0 1.4e-09 38.1 0.0 1.4 1 HMG_box HMG (high mobility group) box 0.0036 17.7 0.0 0.0071 16.8 0.0 1.4 1 HMG_box_2 HMG-box domain Domain annotation for each model (and alignments): >> HMG_box HMG (high mobility group) box # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.0 1.7e-13 1.4e-09 4 48 .. 107 151 .. 105 159 .. 0.95 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 1.7e-13 S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHCSHHHHHH CS HMG_box 4 plsafflfskeqraklkaenPelknaeiskklgekWkalseeeKk 48 p++ +++f++eqr +l+a +P+l +ei+k+l+ +W +ls+++K T260447_2 107 PTTGYMIFLNEQRSQLRATHPDLPFTEIMKMLAVQWAQLSQDKKG 151 899***************************************995 PP >> HMG_box_2 HMG-box domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 8.8e-07 0.0071 8 53 .. 108 152 .. 105 158 .. 0.91 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 8.8e-07 --HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHH CS HMG_box_2 8 rnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKek 53 + +Y++f e++ +l++ p ++ e++k + +W++ls++ K + T260447_2 108 TTGYMIFLNEQRSQLRAT-HPDLPFTEIMKMLAVQWAQLSQDKKGE 152 679***************.**********************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 12756.17 // Query: T260447_3 [L=3254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.40s 00:00:01.70 Elapsed: 00:00:00.73 # Mc/sec: 12752.25 // Query: T202751_1 [L=810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 4729.13 // Query: T202751_2 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.46 # Mc/sec: 5031.33 // Query: T202751_3 [L=809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 4924.28 // Query: T307661_1 [L=2001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-51 173.2 2.0 7.5e-51 172.6 2.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.9e-05 24.8 0.0 3.5e-05 23.9 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.00013 21.7 0.1 0.00032 20.4 0.1 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 172.6 2.0 1.4e-54 7.5e-51 1 222 [] 1704 1960 .. 1704 1960 .. 0.94 Alignments for each domain: == domain 1 score: 172.6 bits; conditional E-value: 1.4e-54 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + + ++ + ++ +++ k k+++++++D +kaFd+++ ++ l T307661_1 1704 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNIIQYINRTKDKNHTIISIDAEKAFDKIQQPFML 1801 899999999999**************************************************966666666666777********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i++++ +++ ++ +ng++ e ++ k+g++qG++lS llfn++++ l r +r++ ++v+l+++aDD++++ ++ T307661_1 1802 KTLNKLGIDGTYLKIIRAIYVKPTGNIILNGQKLEAFPLKTGTRQGCPLSALLFNIVLEVLARAIRQEKeikdiqlgkEEVKLSLFADDMIVYLENpI 1899 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ k sg +in +K++++l+ s+ s+++kyLG++l T307661_1 1900 VSAQNLLKLISNFSKVSGQEINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 1960 77***************************99999988877761156678*********986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.0 6.4e-09 3.5e-05 1 93 [. 1237 1384 .. 1237 1576 .. 0.83 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 6.4e-09 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+ +k++ v ++qE + ++ +l+ + + ++++++ gvavl++ + + + T307661_1 1237 LTLNVNG----LNAPIKRHRLANCIKSQGQSVCCIQENHLMCRDTHRLEIkgWRKICQANRKQKKAGVAVLVSDKTDFKptkikrdkeghyimv 1326 699****....7778899*******************777666655555588445566677888899999999999666678899999999999 PP .......................................EEEEEE-SS...-BEEEEE CS .......................................xxxxxxxxx...xxxxxxx RF Exo_endo_phos 78 .......................................vivlGDfNa...rlDrila 93 i++GDfN+ +lDr T307661_1 1327 kgsiqqeeltilniyapntgaptfikqvlsdlkrdldshTIIMGDFNTplsTLDRSTR 1384 9999999*****************************************8886676533 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.1 5.9e-08 0.00032 2 71 .. 1336 1404 .. 1335 1429 .. 0.82 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 5.9e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehsls 71 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ +l T307661_1 1336 TILNIYAPNTG-APTFIKQVLSDLKRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQADLI 1404 7999***9999.777778888888888886.8**************99888879*************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 452 (0.0277199); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.50 # Mc/sec: 11449.04 // Query: T307661_2 [L=2001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-26 91.1 20.9 1.9e-24 86.1 20.9 2.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.011 15.7 0.4 0.024 14.6 0.4 1.5 1 Med2 Mediator complex subunit 2 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.1 20.9 2.3e-28 1.9e-24 1 179 [. 930 1074 .. 930 1078 .. 0.93 Alignments for each domain: == domain 1 score: 86.1 bits; conditional E-value: 2.3e-28 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk+++sk +++s+P+ke ssP t e+++ ++d +elr+e++++++y+el+e+i++k+ke+e ++k+++e ntek+lk T307661_2 930 MGKKQ---SRKTGKSKKQSASPPPKECGSSPPT--EQSWTENDIDELREEGFRRSNYSELQEEIQTKGKEVEnFEKNLDEcitritNTEKCLK 1017 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHH..HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssr..ideleervsaaedeieeidr.evkerekrkkil 176 el+e+k k++el +e++ sl r d+leervs +ede++e+ + e+k+rekr+k++ T307661_2 1018 ------------------ELMEMKVKAQELCEECR------------------SL--Rs*WDQLEERVSVMEDEMNEM-K*EGKFREKRIKRK 1071 ..................9****************..................55..52449***************9.5559********99 PP HHH CS Transposase_22 177 eqs 179 e + T307661_2 1072 EMN 1074 866 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.4 3e-06 0.024 44 86 .. 988 1030 .. 973 1038 .. 0.81 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 3e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeek 86 +++ +++++F++ LD+ ++++++++++++l+e+k + +e+ T307661_2 988 IQTKGKEVENFEKNLDECITRITNTEKCLKELMEMKVKAQELC 1030 445567899***************************9998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 663 (0.0406599); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.49 # Mc/sec: 11682.70 // Query: T307661_3 [L=2000] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-42 145.0 2.0 1.3e-39 136.0 0.5 3.0 3 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 4e-08 0.00065 189 214 .. 1085 1110 .. 1080 1111 .. 0.92 2 ! 136.0 0.5 7.8e-44 1.3e-39 279 368 .] 1111 1202 .. 1108 1202 .. 0.98 3 ? -4.6 5.1 0.42 6.9e+03 52 119 .. 1465 1539 .. 1448 1544 .. 0.62 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 4e-08 TTEEEEES----TT--HHHHHHHHHH CS Transposase_22 189 rPnlrliGvdesedeqlkklenilnk 214 + nlrliGv+es+ e+++klen+l++ T307661_3 1085 KTNLRLIGVPESDGENGTKLENTLQD 1110 78***********************8 PP == domain 2 score: 136.0 bits; conditional E-value: 7.8e-44 EEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 279 kPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 Pir tad+saetl+arr+ +++++ilkek+fqPr++yPakls+i++ eik+f dk++lrd+++trPalk+llke ++er+ ryq+l++++ T307661_3 1111 MPIRRTADVSAETLQARRDGGPIFNILKEKNFQPRISYPAKLSFITEREIKYFTDKEMLRDFVTTRPALKELLKEalNMERNIRYQPLQNHA 1202 7*****************************************************************************************96 PP == domain 3 score: -4.6 bits; conditional E-value: 0.42 XXXXXXXXXXXXXXX..XXX..XXXXXXXXXX....XX.XXXXX..................XXXXXXXXXXXXXXX CS Transposase_22 52 ikkdfykelkelies..kak..elealkekee....nt.ekqlkiikekqentskqvmemnkellelktkvdelkke 119 k y++l + ++ ++k l+a k k+e nt qlk ekqe+t + +e+ ++++ +e+ + T307661_3 1465 NKDTTYQNLWDTFKAvcRGKfiALNAHKRKQErskiNTlTSQLK-ELEKQEQTHSKAS-RRQEITKIRAELKEIETQ 1539 55555555555544311344115669999999999977345677.6688888866543.456777777777777544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2000 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 860 (0.0527413); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.25s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 10217.25 // Query: T049498_1 [L=2872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1216 (0.0745738); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 95 (0.00582608); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.33s 00:00:01.92 Elapsed: 00:00:00.65 # Mc/sec: 12640.47 // Query: T049498_2 [L=2872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 13.4 7.2 0.056 12.5 7.2 1.3 1 CitMHS Citrate transporter Domain annotation for each model (and alignments): >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 7.2 3.5e-06 0.056 101 176 .. 2044 2282 .. 2039 2322 .. 0.43 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 3.5e-06 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................xxxxxxxxxxxxx RF CitMHS 101 ivlslakrlkklppllliplalaaniggaltpiGtpttr..............................................glslpnllllall 152 +v+ l++ + ++ ++l++++ l+++++ ++ +i + ++ + l l+ T049498_2 2044 AVMLLMAVMLMMAVRLMMAVRLMMAVMLTVAMILMIAVMllmavgy**qq*c**wq*c**ww*cc*wq*cc*wq*cc*wr*c*rwW--------LMLM 2133 33334444566666777777777777777777777722222233445555555555555555555555555555555555555431........3335 PP xxxx............xxxxxxxxxxxxxxxxxxx............................................................... RF CitMHS 153 lvgl............lplvllfmfgvalalpvna............................................................... 175 +v++ l +++++m +v+l+++v + T049498_2 2134 MVMMlmmvvmlmkavmLLMAVILMMAVMLMMAVGY**qq*c**wq*y***q*c**wr*c**w**wq*y**ww*cc*wl*cc*wl*cc*ww*c*wr*cc 2231 55550000001122224444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP ..................................................x RF CitMHS 176 ..................................................v 176 + T049498_2 2232 lwq*cc*wwwdidnssdaddggdavdgsdavdgndtddggdaddgddaddG 2282 444444444444444444444444444444444444444444444433333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 784 (0.0480805); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.08u 0.30s 00:00:01.38 Elapsed: 00:00:00.57 # Mc/sec: 14166.04 // Query: T049498_3 [L=2872] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2872 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1030 (0.0631669); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.30s 00:00:01.50 Elapsed: 00:00:00.60 # Mc/sec: 13693.84 // Query: T211309_1 [L=2560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.53 # Mc/sec: 13818.35 // Query: T211309_2 [L=2560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 13818.35 // Query: T211309_3 [L=2560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 13315.86 // Query: T038702_1 [L=103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-11 41.9 0.0 6e-11 41.6 0.0 1.0 1 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family Domain annotation for each model (and alignments): >> UPF0061 Uncharacterized ACR, YdiU/UPF0061 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.6 0.0 3.7e-15 6e-11 78 118 .. 1 41 [. 1 42 [. 0.99 Alignments for each domain: == domain 1 score: 41.6 bits; conditional E-value: 3.7e-15 UPF0061 78 FGeynpqLGDGRgfllgqvrdkdgelydfglKGsGlTPySR 118 FG ++ qL DGR++ g +r+++ge ++++lKGsG+TPySR T038702_1 1 FGIWADQLTDGRAHPIGIYRNRRGEKWELQLKGSGRTPYSR 41 9***************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 613.89 // Query: T038702_2 [L=102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.48 # Mc/sec: 607.93 // Query: T038702_3 [L=102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.49 # Mc/sec: 595.52 // Query: T369101_1 [L=2007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 510 (0.0312768); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 10632.75 // Query: T369101_2 [L=2006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.22s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 11036.20 // Query: T369101_3 [L=2006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.52 # Mc/sec: 11036.20 // Query: T041916_1 [L=2411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.54 # Mc/sec: 12773.08 // Query: T041916_2 [L=2411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2411 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 12316.89 // Query: T041916_3 [L=2410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.3 11.4 7.4 25 5.3 0.2 3.9 4 PRAP Proline-rich acidic protein 1, pregnancy-specific u Domain annotation for each model (and alignments): >> PRAP Proline-rich acidic protein 1, pregnancy-specific uterine # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.2 0.0015 25 4 12 .. 1069 1077 .. 1068 1080 .. 0.87 2 ? 4.6 0.0 0.0025 41 4 12 .. 1265 1273 .. 1265 1277 .. 0.90 3 ? 3.3 0.1 0.0065 1.1e+02 3 12 .. 1446 1455 .. 1446 1461 .. 0.88 4 ? -2.0 0.1 0.29 4.8e+03 7 13 .. 1635 1641 .. 1631 1647 .. 0.80 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0015 PRAP 4 DlDkLYHps 12 D+D+LYHp T041916_3 1069 DRDSLYHPG 1077 9******96 PP == domain 2 score: 4.6 bits; conditional E-value: 0.0025 PRAP 4 DlDkLYHps 12 D+D+LYHp T041916_3 1265 DRDSLYHPG 1273 9******96 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0065 PRAP 3 eDlDkLYHps 12 +D D+LYHp T041916_3 1446 QDGDSLYHPG 1455 699*****96 PP == domain 4 score: -2.0 bits; conditional E-value: 0.29 PRAP 7 kLYHpst 13 +LYHps T041916_3 1635 SLYHPSW 1641 79***85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.56 # Mc/sec: 12311.79 // Query: T233301_1 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 2461.51 // Query: T233301_2 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 2411.27 // Query: T233301_3 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2411.27 // Query: T259011_1 [L=3057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 15901.01 // Query: T259011_2 [L=3057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.55 # Mc/sec: 15901.01 // Query: T259011_3 [L=3057] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.9 6.5 6.6 11 5.6 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 6.6 0.00067 11 6 41 .. 2116 2151 .. 2102 2162 .. 0.92 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.00067 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T259011_3 2116 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 2151 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3057 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.57 # Mc/sec: 15078.55 // Query: T352789_1 [L=2357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.6 8.6 24.0 56 3.7 0.0 12.4 17 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.034 5.5e+02 8 22 .. 137 151 .. 133 158 .. 0.87 2 ? -2.1 0.0 0.22 3.7e+03 8 17 .. 182 191 .. 166 197 .. 0.63 3 ? -3.6 0.0 0.64 1e+04 8 21 .. 280 293 .. 275 294 .. 0.87 4 ? -3.2 0.0 0.48 7.8e+03 10 33 .. 365 388 .. 363 389 .. 0.88 5 ? -1.4 0.0 0.14 2.2e+03 8 22 .. 408 422 .. 405 423 .. 0.87 6 ? -2.7 0.1 0.35 5.6e+03 9 22 .. 431 444 .. 428 453 .. 0.75 7 ? -3.6 0.0 0.67 1.1e+04 8 22 .. 445 459 .. 438 470 .. 0.74 8 ? -0.6 0.0 0.075 1.2e+03 8 27 .. 565 584 .. 563 595 .. 0.69 9 ? 3.7 0.0 0.0035 56 8 32 .. 707 731 .. 691 735 .. 0.89 10 ? 1.2 0.0 0.02 3.2e+02 8 24 .. 798 814 .. 793 821 .. 0.83 11 ? -0.3 0.0 0.061 1e+03 8 21 .. 1038 1051 .. 1023 1055 .. 0.86 12 ? -3.6 0.0 0.64 1e+04 8 19 .. 1121 1132 .. 1119 1136 .. 0.79 13 ? -2.7 0.1 0.35 5.7e+03 9 22 .. 1152 1165 .. 1149 1174 .. 0.75 14 ? -3.7 0.0 0.72 1.2e+04 8 22 .. 1166 1180 .. 1161 1190 .. 0.74 15 ? 0.1 0.0 0.044 7.2e+02 8 21 .. 1376 1389 .. 1371 1391 .. 0.87 16 ? 0.2 0.0 0.042 6.9e+02 8 21 .. 1413 1426 .. 1408 1428 .. 0.87 17 ? 3.3 0.0 0.0045 73 8 34 .. 1547 1573 .. 1541 1577 .. 0.88 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.034 RST 8 sFpmLlaalskklpp 22 +FpmL++ ls+ +p T352789_1 137 TFPMLFQNLSHAVPG 151 7*********99985 PP == domain 2 score: -2.1 bits; conditional E-value: 0.22 RST 8 sFpmLlaals 17 +FpmL++ l T352789_1 182 TFPMLFKDLH 191 4666666655 PP == domain 3 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352789_1 280 PLPMLFQNLSHAVP 293 689*******9887 PP == domain 4 score: -3.2 bits; conditional E-value: 0.48 RST 10 pmLlaalskklppskmellqklYe 33 pmL++ l + +p + +l q lY T352789_1 365 PMLFQDLTHAVPGTSPMLFQDLYH 388 89*********9999999999885 PP == domain 5 score: -1.4 bits; conditional E-value: 0.14 RST 8 sFpmLlaalskklpp 22 +FpmL++ +s+ +p+ T352789_1 408 TFPMLFQDVSHAVPE 422 7********999985 PP == domain 6 score: -2.7 bits; conditional E-value: 0.35 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352789_1 431 FPMLFQGLHPHYSR 444 88999888888654 PP == domain 7 score: -3.6 bits; conditional E-value: 0.67 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352789_1 445 TFPMLFQNSSHAVPG 459 699999877777665 PP == domain 8 score: -0.6 bits; conditional E-value: 0.075 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ l ++ ++ +l T352789_1 565 TFPMLFQDLCPHCSRTFPML 584 68888888888877654444 PP == domain 9 score: 3.7 bits; conditional E-value: 0.0035 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352789_1 707 TFPMLFQSLSHAVPGPSPMLFQELH 731 5*************99988888776 PP == domain 10 score: 1.2 bits; conditional E-value: 0.02 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352789_1 798 TFPMLFQDLSHAVPRPS 814 7************9876 PP == domain 11 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_1 1038 TFPMLFQDLSHTVP 1051 69999999999887 PP == domain 12 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352789_1 1121 TFPMLFQDLHPS 1132 7*****988765 PP == domain 13 score: -2.7 bits; conditional E-value: 0.35 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352789_1 1152 FPMLFQGLHPHYSR 1165 88999888888654 PP == domain 14 score: -3.7 bits; conditional E-value: 0.72 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352789_1 1166 TFPMLFQNSSHAVPG 1180 799999877777765 PP == domain 15 score: 0.1 bits; conditional E-value: 0.044 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_1 1376 TFPMLFQNLSHAVP 1389 7*********9988 PP == domain 16 score: 0.2 bits; conditional E-value: 0.042 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_1 1413 TFPMLFQNLSHAVP 1426 7*********9998 PP == domain 17 score: 3.3 bits; conditional E-value: 0.0045 RST 8 sFpmLlaalskklppskmellqklYee 34 FpmL++ ls+ +p + llq l+++ T352789_1 1547 NFPMLFQDLSHAVPGPSPILLQDLHAC 1573 6***************99999999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 12259.96 // Query: T352789_2 [L=2357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 8.8 29.1 26 4.7 0.0 13.3 19 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.061 1e+03 8 21 .. 287 300 .. 272 304 .. 0.86 2 ? -3.6 0.0 0.64 1e+04 10 29 .. 372 391 .. 369 396 .. 0.61 3 ? -1.7 0.0 0.16 2.6e+03 8 21 .. 467 480 .. 464 488 .. 0.85 4 ? 4.7 0.0 0.0016 26 8 33 .. 497 522 .. 494 527 .. 0.88 5 ? -2.3 0.0 0.25 4.1e+03 8 21 .. 542 555 .. 536 564 .. 0.79 6 ? -3.6 0.0 0.64 1e+04 8 21 .. 655 668 .. 650 669 .. 0.87 7 ? -3.2 0.0 0.48 7.8e+03 10 33 .. 740 763 .. 738 764 .. 0.88 8 ? -1.9 0.0 0.2 3.2e+03 8 21 .. 783 796 .. 781 798 .. 0.87 9 ? -2.7 0.1 0.35 5.6e+03 9 22 .. 806 819 .. 803 828 .. 0.75 10 ? -3.6 0.0 0.67 1.1e+04 8 22 .. 820 834 .. 813 845 .. 0.74 11 ? -0.6 0.0 0.075 1.2e+03 8 27 .. 940 959 .. 938 970 .. 0.69 12 ? 3.7 0.0 0.0035 56 8 32 .. 1082 1106 .. 1066 1110 .. 0.89 13 ? -1.8 0.0 0.17 2.8e+03 8 21 .. 1188 1201 .. 1185 1209 .. 0.85 14 ? 4.7 0.0 0.0016 26 8 33 .. 1218 1243 .. 1215 1248 .. 0.88 15 ? 0.2 0.0 0.041 6.7e+02 8 21 .. 1263 1276 .. 1257 1279 .. 0.87 16 ? -2.6 0.0 0.31 5e+03 8 20 .. 1308 1320 .. 1305 1328 .. 0.81 17 ? -0.6 0.0 0.073 1.2e+03 8 21 .. 1383 1396 .. 1379 1398 .. 0.88 18 ? -0.5 0.0 0.07 1.1e+03 8 21 .. 1420 1433 .. 1417 1435 .. 0.88 19 ? -3.3 0.0 0.52 8.5e+03 8 19 .. 1554 1565 .. 1552 1574 .. 0.81 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_2 287 TFPMLFQDLSHTVP 300 69999999999887 PP == domain 2 score: -3.6 bits; conditional E-value: 0.64 RST 10 pmLlaalskklppskmellq 29 pmL++ l + ++ ++l q T352789_2 372 PMLFQELHPCCSRTFTMLFQ 391 77777777766665555544 PP == domain 3 score: -1.7 bits; conditional E-value: 0.16 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352789_2 467 TFPMLFQDLHPHYS 480 7******9999966 PP == domain 4 score: 4.7 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352789_2 497 TFPMLFQELSHAVPGRSLILFQDLYP 522 7*************999999999885 PP == domain 5 score: -2.3 bits; conditional E-value: 0.25 RST 8 sFpmLlaalskklp 21 +FpmL++ l + + T352789_2 542 TFPMLFKDLHPCCS 555 7******9988665 PP == domain 6 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352789_2 655 PLPMLFQNLSHAVP 668 689*******9887 PP == domain 7 score: -3.2 bits; conditional E-value: 0.48 RST 10 pmLlaalskklppskmellqklYe 33 pmL++ l + +p + +l q lY T352789_2 740 PMLFQDLTHAVPGTSPMLFQDLYH 763 89*********9999999999885 PP == domain 8 score: -1.9 bits; conditional E-value: 0.2 RST 8 sFpmLlaalskklp 21 +FpmL++ +s+ +p T352789_2 783 TFPMLFQDVSHAVP 796 7******9999887 PP == domain 9 score: -2.7 bits; conditional E-value: 0.35 RST 9 FpmLlaalskklpp 22 FpmL++ l ++ ++ T352789_2 806 FPMLFQGLHPHYSR 819 88999888888654 PP == domain 10 score: -3.6 bits; conditional E-value: 0.67 RST 8 sFpmLlaalskklpp 22 +FpmL++ s+ +p T352789_2 820 TFPMLFQNSSHAVPG 834 699999877777665 PP == domain 11 score: -0.6 bits; conditional E-value: 0.075 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ l ++ ++ +l T352789_2 940 TFPMLFQDLCPHCSRTFPML 959 68888888888877654444 PP == domain 12 score: 3.7 bits; conditional E-value: 0.0035 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352789_2 1082 TFPMLFQSLSHAVPGPSPMLFQELH 1106 5*************99988888776 PP == domain 13 score: -1.8 bits; conditional E-value: 0.17 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352789_2 1188 TFPMLFQDLHPHYS 1201 7******9999865 PP == domain 14 score: 4.7 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352789_2 1218 TFPMLFQELSHAVPGRSLILFQDLYP 1243 7*************999999998885 PP == domain 15 score: 0.2 bits; conditional E-value: 0.041 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_2 1263 TFPMLFQNLSHAVP 1276 7*********9998 PP == domain 16 score: -2.6 bits; conditional E-value: 0.31 RST 8 sFpmLlaalskkl 20 +FpmL++ l + T352789_2 1308 TFPMLFKDLHPRC 1320 7*****9998765 PP == domain 17 score: -0.6 bits; conditional E-value: 0.073 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_2 1383 TFPMLFQDLSHTVP 1396 7*********9998 PP == domain 18 score: -0.5 bits; conditional E-value: 0.07 RST 8 sFpmLlaalskklp 21 +FpmL++ +s+ +p T352789_2 1420 TFPMLFQDISHAVP 1433 7*********9988 PP == domain 19 score: -3.3 bits; conditional E-value: 0.52 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352789_2 1554 TFPMLFQDLHPY 1565 7*****998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 12041.03 // Query: T352789_3 [L=2357] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 14.8 22.1 26 4.7 0.0 12.1 14 RST RCD1-SRO-TAF4 (RST) plant domain Domain annotation for each model (and alignments): >> RST RCD1-SRO-TAF4 (RST) plant domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 0.6 9.7e+03 8 19 .. 204 215 .. 202 221 .. 0.80 2 ? 3.7 0.0 0.0035 56 8 32 .. 331 355 .. 315 359 .. 0.89 3 ? 1.3 0.0 0.019 3.2e+02 8 24 .. 422 438 .. 417 445 .. 0.83 4 ? -0.3 0.0 0.061 1e+03 8 21 .. 662 675 .. 647 679 .. 0.86 5 ? -3.6 0.0 0.64 1e+04 10 29 .. 747 766 .. 744 771 .. 0.61 6 ? -2.7 0.0 0.33 5.5e+03 8 22 .. 790 804 .. 788 805 .. 0.87 7 ? -1.7 0.0 0.16 2.6e+03 8 21 .. 842 855 .. 839 863 .. 0.85 8 ? 4.7 0.0 0.0016 26 8 33 .. 872 897 .. 869 902 .. 0.88 9 ? -2.3 0.0 0.25 4.1e+03 8 21 .. 917 930 .. 911 939 .. 0.79 10 ? -3.6 0.0 0.64 1e+04 8 21 .. 1030 1043 .. 1025 1044 .. 0.87 11 ? 1.2 0.0 0.02 3.2e+02 8 24 .. 1143 1159 .. 1138 1166 .. 0.83 12 ? 3.2 0.0 0.0049 80 8 32 .. 1442 1466 .. 1427 1471 .. 0.87 13 ? -0.5 0.0 0.071 1.2e+03 8 21 .. 1502 1515 .. 1498 1517 .. 0.85 14 ? 1.3 0.1 0.019 3.1e+02 8 27 .. 1524 1543 .. 1520 1547 .. 0.83 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 0.6 RST 8 sFpmLlaalskk 19 +FpmL++ l + T352789_3 204 TFPMLFQDLHPR 215 7*****988775 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0035 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q+l+ T352789_3 331 TFPMLFQSLSHAVPGPSPMLFQELH 355 5*************99988888776 PP == domain 3 score: 1.3 bits; conditional E-value: 0.019 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352789_3 422 TFPMLFQDLSHAVPRPS 438 7************9876 PP == domain 4 score: -0.3 bits; conditional E-value: 0.061 RST 8 sFpmLlaalskklp 21 +FpmL++ ls+ +p T352789_3 662 TFPMLFQDLSHTVP 675 69999999999887 PP == domain 5 score: -3.6 bits; conditional E-value: 0.64 RST 10 pmLlaalskklppskmellq 29 pmL++ l + ++ ++l q T352789_3 747 PMLFQELHPCCSRTFTMLFQ 766 77777777766665555544 PP == domain 6 score: -2.7 bits; conditional E-value: 0.33 RST 8 sFpmLlaalskklpp 22 +Fp+L++ ls+ +p T352789_3 790 TFPTLFQDLSHAVPG 804 7*********99985 PP == domain 7 score: -1.7 bits; conditional E-value: 0.16 RST 8 sFpmLlaalskklp 21 +FpmL++ l ++ + T352789_3 842 TFPMLFQDLHPHYS 855 7******9999966 PP == domain 8 score: 4.7 bits; conditional E-value: 0.0016 RST 8 sFpmLlaalskklppskmellqklYe 33 +FpmL++ ls+ +p + l q lY T352789_3 872 TFPMLFQELSHAVPGRSLILFQDLYP 897 7*************999999999885 PP == domain 9 score: -2.3 bits; conditional E-value: 0.25 RST 8 sFpmLlaalskklp 21 +FpmL++ l + + T352789_3 917 TFPMLFKDLHPCCS 930 7******9988665 PP == domain 10 score: -3.6 bits; conditional E-value: 0.64 RST 8 sFpmLlaalskklp 21 + pmL++ ls+ +p T352789_3 1030 PLPMLFQNLSHAVP 1043 689*******9887 PP == domain 11 score: 1.2 bits; conditional E-value: 0.02 RST 8 sFpmLlaalskklppsk 24 +FpmL++ ls+ +p+ + T352789_3 1143 TFPMLFQDLSHAVPRPS 1159 7************9876 PP == domain 12 score: 3.2 bits; conditional E-value: 0.0049 RST 8 sFpmLlaalskklppskmellqklY 32 +FpmL++ ls+ +p + +l q l+ T352789_3 1442 TFPMLFQSLSHAVPGPSPMLFQDLH 1466 6*************98888877665 PP == domain 13 score: -0.5 bits; conditional E-value: 0.071 RST 8 sFpmLlaalskklp 21 +FpmL++ ls +p T352789_3 1502 TFPMLFQELSCAVP 1515 7********98776 PP == domain 14 score: 1.3 bits; conditional E-value: 0.019 RST 8 sFpmLlaalskklppskmel 27 +FpmL++ ls+ +p+ + l T352789_3 1524 TFPMLFQDLSHAVPRPSPTL 1543 7************9976655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2357 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 12722.60 // Query: T236811_1 [L=3926] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-13 48.7 0.5 7e-13 48.0 0.5 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.0 0.5 4.3e-17 7e-13 201 310 .. 1104 1213 .. 1102 1215 .. 0.86 Alignments for each domain: == domain 1 score: 48.0 bits; conditional E-value: 4.3e-17 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHH..HHHHHHHHHHHHS-EEET..TEEEEEEE---H CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvl..nkdkilkavrekGrvtlk..GkPirltadlsa 289 e+e+ +en+++ i++enfPnl+ ++nv++qe yrtP r++ k ++s+ + +t k + k+ r k + t G P+ l+ad+s T236811_1 1104 EVEREISIENLFKGIVRENFPNLENDINVQLQEGYRTPSRFNPKETTSKALNNQTPKSQg*RKNSEG---R-KRKETNNm*GDPVYLAADFSV 1192 67788899******************************************99999988844466543...3.44445666************* PP HHH.HHHHHHHHHHHHHHHTT- CS Transposase_22 290 etl.karrewtdviqilkekkf 310 etl +rew d+++ lkekk+ T236811_1 1193 ETL*A-KREWHDIFKELKEKKL 1213 **775.69************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3926 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 19036.64 // Query: T236811_2 [L=3925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.56 # Mc/sec: 19699.58 // Query: T236811_3 [L=3925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3925 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 19359.93 // Query: T301998_1 [L=2662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 14368.92 // Query: T301998_2 [L=2661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 13594.05 // Query: T301998_3 [L=2661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 13841.22 // Query: T228735_1 [L=3390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 17318.24 // Query: T228735_2 [L=3390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-06 24.3 0.0 1.3e-05 23.8 0.0 1.1 1 AMP-binding AMP-binding enzyme Domain annotation for each model (and alignments): >> AMP-binding AMP-binding enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.0 8e-10 1.3e-05 380 421 .. 57 96 .. 53 98 .. 0.93 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 8e-10 T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEESSSEEE CS AMP-binding 380 nkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421 ++pe tae+ + g+ TGD +++de+Gy++++gR+ d+i+ T228735_2 57 GNPENTAEVEC--GDVCDTGDRATVDEEGYIWFLGRSHDTIN 96 69******988..68*************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.37u 0.31s 00:00:01.68 Elapsed: 00:00:00.83 # Mc/sec: 11684.59 // Query: T228735_3 [L=3389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.68 # Mc/sec: 14257.87 // Query: T138091_1 [L=2153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 10265.61 // Query: T138091_2 [L=2153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 10439.61 // Query: T138091_3 [L=2153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.76 # Mc/sec: 8104.43 // Query: T369343_1 [L=3265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.37s 00:00:01.69 Elapsed: 00:00:00.70 # Mc/sec: 13343.73 // Query: T369343_2 [L=3265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.69 # Mc/sec: 13537.12 // Query: T369343_3 [L=3265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.70 # Mc/sec: 13343.73 // Query: T067424_1 [L=3244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.53 # Mc/sec: 17510.44 // Query: T067424_2 [L=3244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.29s 00:00:01.55 Elapsed: 00:00:00.76 # Mc/sec: 12211.23 // Query: T067424_3 [L=3244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0025 17.3 0.2 0.0053 16.3 0.2 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.2 3.3e-07 0.0053 2 17 .. 3107 3122 .. 3107 3122 .. 0.98 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 3.3e-07 DUF1725 2 FagKWMELEnIILSEi 17 Fa++WM E+IILSEi T067424_3 3107 FATTWMNPEDIILSEI 3122 9**************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.39s 00:00:01.74 Elapsed: 00:00:00.76 # Mc/sec: 12211.23 // Query: T376355_1 [L=6052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.42s 00:00:02.35 Elapsed: 00:00:00.79 # Mc/sec: 21916.13 // Query: T376355_2 [L=6051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.38s 00:00:02.08 Elapsed: 00:00:00.79 # Mc/sec: 21912.51 // Query: T376355_3 [L=6051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.35s 00:00:02.20 Elapsed: 00:00:00.72 # Mc/sec: 24042.89 // Query: T221729_1 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1026 (0.0629216); expected 326.1 (0.02) Passed bias filter: 401 (0.0245922); expected 326.1 (0.02) Passed Vit filter: 65 (0.00398626); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.57 # Mc/sec: 4463.88 // Query: T221729_2 [L=905] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (905 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1442 (0.0884337); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.63 # Mc/sec: 4109.60 // Query: T221729_3 [L=904] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (904 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.65 # Mc/sec: 3978.75 // Query: T031004_1 [L=10520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-50 171.4 0.4 3.1e-50 170.9 0.4 1.1 1 Transposase_22 L1 transposable element 2.6e-13 49.9 0.0 4.3e-13 49.2 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 5.7e-07 29.2 0.0 1.3e-06 28.0 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) 5.3e-06 26.1 1.0 8.8e-06 25.4 1.0 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 5.7e-06 26.4 0.0 9.5e-06 25.7 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 170.9 0.4 9.5e-54 3.1e-50 262 368 .] 597 705 .. 596 705 .. 0.98 Alignments for each domain: == domain 1 score: 170.9 bits; conditional E-value: 9.5e-54 HHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T CS Transposase_22 262 dkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..k 354 +k+l+a+rekG vt kGkPirltadlsaetl+arre + +++i+kek+fqPr++yPakls+i++Geik f dk++lrd+++trPal++llke + T031004_1 597 KKMLRAAREKGWVTHKGKPIRLTADLSAETLQARRERGSIFNIVKEKNFQPRISYPAKLSFISEGEIKSFTDKHMLRDFVTTRPALQELLKEalN 691 69********************************************************************************************* PP -SSXSSXXXXXXXX CS Transposase_22 355 nerkdryqaleqar 368 er+++yq+l+ ++ T031004_1 692 VERNNQYQPLQTHA 705 ***********986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.2 0.0 1.3e-16 4.3e-13 65 143 .. 1316 1394 .. 1313 1396 .. 0.96 Alignments for each domain: == domain 1 score: 49.2 bits; conditional E-value: 1.3e-16 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHH CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllf 143 ++k+++++++D +kaFd+++ + l++l+ ++++ + +++i++++ ++++s+ +ng++ e ++ k+g++qG++lSPll+ T031004_1 1316 MTKKHMIISIDAEKAFDKIQQLFMLNTLNILGIDGTYLKIIRAIYDKPTASIILNGQKLEAFPLKTGTRQGCPLSPLLY 1394 67899****************************************************99******************98 PP >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.0 0.0 4e-10 1.3e-06 29 78 .. 8698 8747 .. 8687 8749 .. 0.94 Alignments for each domain: == domain 1 score: 28.0 bits; conditional E-value: 4e-10 Transposase_1 29 kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalv 78 kvm+ ++ + +g+++++fl+ ++tits+ Y + l+k ++l+ek+p++ T031004_1 8698 AKVMAKFFGDVQGVLLVDFLEGQKTITSTNYESILRKSVKALAEKHPGKF 8747 59*********************************************975 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 1.0 2.7e-09 8.8e-06 4 118 .. 839 960 .. 836 961 .. 0.81 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 2.7e-09 Exo_endo_phos_2 4 isvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ssi 90 ++Y +++ + + +++ l++l ++l+s +++i+GDfN ++ + +++++ ++ ++L + l++ +l + ++k++ tf s+ + s T031004_1 839 LNIYASNTG-APRFIKQVLRDLQRDLDS-HTVIMGDFNTPQSILDRSTRQKvNKDIQNLNSALHQADLIDIyrtLHPKSTeYTFFSGPHhtYSK 930 678888888.777777888888888886.8***************98888799**************9866666444444478777666668** PP Exo_endo_phos_2 91 iDltltsdnlaks..leleeedlgSDHrpi 118 iD t+ s+ l+ + ++ +++++S H++i T031004_1 931 IDHTVGSKVLLSKckRTEITTNCLSGHSAI 960 *************985666689*****998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.0 2.9e-09 9.5e-06 1 94 [. 740 937 .. 740 957 .. 0.80 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 2.9e-09 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl................. 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE+d +++ +l+ + +k + ++++ gva+l+ + t T031004_1 740 LTLNVNG----LNAPIKRHKLANWIKSQDPSVGCIQETDFTFRDIHRLKIkgWRKIYKANGKHKKVGVAILVADKHTLNqqrsketrtlhngkrin 831 699****....77788899******************99999888877779855666777788888888888776633344778899999999999 PP ...................................EEEEEE-SS.................................................... CS ...................................xxxxxxxxx.................................................... RF Exo_endo_phos 78 ...................................vivlGDfNa.................................................... 86 +++GDfN+ T031004_1 832 strranylniyasntgaprfikqvlrdlqrdldshTVIMGDFNTpqsildrstrqkvnkdiqnlnsalhqadlidiyrtlhpksteytffsgphht 927 99999999999999999999999999999999999*********9998888888888888888888888777777777777776666666666666 PP ..-BEEEEEE CS ..xxxxxxxx RF Exo_endo_phos 87 ..rlDrilas 94 +D+++ s T031004_1 928 ysKIDHTVGS 937 6666666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 2.96u 0.42s 00:00:03.38 Elapsed: 00:00:00.85 # Mc/sec: 35406.98 // Query: T031004_2 [L=10520] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00037 19.9 0.3 0.00073 19.0 0.3 1.5 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.3 8.9e-08 0.00073 1 19 [] 1966 1984 .. 1966 1984 .. 0.96 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 8.9e-08 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fa +WM+LE IILS+ sQ T031004_2 1966 SFARTWMKLEIIILSKLSQ 1984 7999**************9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 2.8e-05 0.23 8 89 .. 4988 5064 .. 4987 5064 .. 0.84 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 2.8e-05 EEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEE.EETTEEEEE..EEEESTTSSSEEE- CS RVP 8 kvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaiev.llieekfrgevsplilpelpvnllG 89 ++ ++gk + +l+ t A+++ + + P + a+ ++ Gi + ++ ++ ++ +l + f+ s+l++p++pv+llG T031004_2 4988 TLTVEGKSVPFLINTEATHSTSPSFQGPVS----LASITVVGIDSQASKPLKTPQLWcQLRQYSFK--HSFLVIPTCPVPLLG 5064 7899**************************....*********99997777666443034444455..5************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10520 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.73u 0.43s 00:00:03.16 Elapsed: 00:00:01.01 # Mc/sec: 29797.95 // Query: T031004_3 [L=10519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-54 184.1 8.5 5.2e-54 183.4 8.5 1.2 1 Transposase_22 L1 transposable element 1.2e-17 64.0 0.2 5.2e-07 29.3 0.1 3.2 3 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 183.4 8.5 6.4e-58 5.2e-54 96 268 .. 431 602 .. 427 610 .. 0.93 Alignments for each domain: == domain 1 score: 183.4 bits; conditional E-value: 6.4e-58 .........XXXXXXXXXXXXXXXXX..................XXHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS Transposase_22 96 skqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssr.ideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr 189 k+v +++k l e t+++ + k+ + +e++t+++ +s+ + d++eervs +ed+++ei+ e k+rekr+k++eqslq+++d+vkr T031004_3 431 HKEVKNLEKRLGEWLTRINSIEKTLN-ELMELKTMARELCHTCTSF-NS*FDQVEERVSVMEDQMNEIKPEEKFREKRVKRNEQSLQEMWDYVKR 523 5889999*****************99.6799999999887777775.56779******************************************* PP TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHH CS Transposase_22 190 PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkav 268 Pnl liGv+es+ e+++klen+l++ ++ +fPnl+k+an++iqei+rtP+r++s+r+ +rhiivr+tkv++k+k +k T031004_3 524 PNLHLIGVPESDRENGTKLENTLEDTVQGDFPNLAKQANIQIQEIQRTPKRYSSRRTIPRHIIVRFTKVEMKEKNVKGS 602 **************************************************************************98864 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.1 6.4e-11 5.2e-07 3 66 .. 1244 1316 .. 1242 1323 .. 0.81 2 ! 23.0 0.0 5.2e-09 4.3e-05 142 222 .] 1390 1496 .. 1367 1496 .. 0.86 3 ! 8.1 0.0 0.0002 1.6 65 96 .. 5213 5244 .. 5175 5244 .. 0.79 Alignments for each domain: == domain 1 score: 29.3 bits; conditional E-value: 6.4e-11 -TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHT CS RVT_1 3 Kkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkk 66 K+g ++++Rpi+l+++d k+ nk++a+r++++++kl+ ++q+gf pg + + ++ + ++++++ + T031004_3 1244 KPGrdttkKEDFRPIALTNIDAKIPNKILANRIQQHIKKLIYHDQVGFIPGMQGWFNIctsiNLIHHINRIND 1316 55566666689******************************************99999988644444444343 PP == domain 2 score: 23.0 bits; conditional E-value: 5.2e-09 HHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHH.HHHHHHHHHHHHTT--BEGGG-EEE.....................ES CS RVT_1 142 lfnlfmnellrelrkra.........kgvtllrYaDDililskskeelq.elleaveewlkesglkinpeKtklvlf...........sg.....kse 213 + +++++ l r +r++ ++v+l++ aDD++++ +++ +ll+ ++++ k sg+kin +K++++l+ ++ ++ T031004_3 1390 TTSILLEVLARTIRQEKeikgiqlgkEEVKLSLLADDVIVYLENPIVST*NLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimRElpftvATK 1487 55788899999999988999999999******************9998888999*********************99999988877761156679*** PP SEEETTEEE CS RVT_1 214 evkyLGvtl 222 ++kyLG++l T031004_3 1488 RIKYLGIQL 1496 ******986 PP == domain 3 score: 8.1 bits; conditional E-value: 0.0002 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafk 96 ++ ++++ lDlk a++++pl+ +++l+af+ T031004_3 5213 PPSTTHYSVLDLKHAYFTIPLHPSSQPLFAFT 5244 46679*************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (10519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 3.03u 0.49s 00:00:03.51 Elapsed: 00:00:00.94 # Mc/sec: 32013.91 // Query: T258955_1 [L=2899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 6.7 6.6 10 5.7 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00064 10 6 41 .. 1909 1944 .. 1895 1955 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00064 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258955_1 1909 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1944 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 12565.98 // Query: T258955_2 [L=2899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.52 # Mc/sec: 15949.13 // Query: T258955_3 [L=2899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.73 # Mc/sec: 11361.02 // Query: T111351_1 [L=924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.62 # Mc/sec: 4263.56 // Query: T111351_2 [L=923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5281.09 // Query: T111351_3 [L=923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.65 # Mc/sec: 4062.38 // Query: T381511_1 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.69 # Mc/sec: 5721.66 // Query: T381511_2 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.60 # Mc/sec: 6579.91 // Query: T381511_3 [L=1379] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1379 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.69 # Mc/sec: 5717.51 // Query: T249681_1 [L=4272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 532 (0.032626); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.40s 00:00:02.11 Elapsed: 00:00:00.73 # Mc/sec: 16741.73 // Query: T249681_2 [L=4272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 397 (0.0243469); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.36s 00:00:01.83 Elapsed: 00:00:00.71 # Mc/sec: 17213.33 // Query: T249681_3 [L=4272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 630 (0.0386361); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.42s 00:00:02.20 Elapsed: 00:00:00.78 # Mc/sec: 15668.55 // Query: T090090_1 [L=940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3954.68 // Query: T090090_2 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4712.84 // Query: T090090_3 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 4403.80 // Query: T359265_1 [L=485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.65 # Mc/sec: 2134.62 // Query: T359265_2 [L=484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-48 165.7 2.6 1.4e-48 165.3 2.6 1.1 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 165.3 2.6 8.3e-53 1.4e-48 4 206 .. 270 484 .] 266 484 .] 0.97 Alignments for each domain: == domain 1 score: 165.3 bits; conditional E-value: 8.3e-53 TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 k +++Rpisl++++ k+lnk++akr++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +k Fd+++ ++ l++l++++++ T359265_2 270 K--ENFRPISLMNINAKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKDFDKIQQPFMLKTLNKLGIHG 367 3..69**************************************************99999999999999******************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHH CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleavee 189 + ++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++m+ l r +r++ ++v+l+++aDD++++ ++ ++q+ll+ +++ T359265_2 368 TYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVMEILARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLENhIVSVQNLLKLISN 467 **********************99*********************************99***************************7777********** PP HHHHTT--BEGGG-EEE CS RVT_1 190 wlkesglkinpeKtklv 206 + k sg+kin +K++++ T359265_2 468 FSKVSGYKINVQKSQAF 484 ***************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2429.20 // Query: T359265_3 [L=484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.66 # Mc/sec: 2097.94 // Query: T277784_1 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 5475.81 // Query: T277784_2 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 6739.46 // Query: T277784_3 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 5006.45 // Query: T043272_1 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.66 # Mc/sec: 12019.82 // Query: T043272_2 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.4 7.9 5.8 5.4 6.7 5.8 1.5 1 SP_C-Propep Surfactant protein C, N terminal propeptide Domain annotation for each model (and alignments): >> SP_C-Propep Surfactant protein C, N terminal propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 5.8 0.00033 5.4 41 58 .. 1452 1469 .. 1440 1476 .. 0.84 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00033 SP_C-Propep 41 ivvvvvvlvvvvvlgall 58 +vvvvvv+vvvvv+g ll T043272_2 1452 VVVVVVVVVVVVVVGKLL 1469 788888889999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 479 (0.0293757); expected 326.1 (0.02) Passed bias filter: 226 (0.0138599); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.20u 0.27s 00:00:01.47 Elapsed: 00:00:00.59 # Mc/sec: 13445.90 // Query: T043272_3 [L=2773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.65 # Mc/sec: 12204.74 // Query: T032035_1 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.68 # Mc/sec: 7248.84 // Query: T032035_2 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 7468.50 // Query: T032035_3 [L=1723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 7248.84 // Query: T006614_1 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 2569.64 // Query: T006614_2 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 2398.33 // Query: T006614_3 [L=502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.64 # Mc/sec: 2243.96 // Query: T222197_1 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 3242.27 // Query: T222197_2 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 3462.09 // Query: T222197_3 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43 # Mc/sec: 4750.31 // Query: T015057_1 [L=100] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (100 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.44 # Mc/sec: 650.19 // Query: T015057_2 [L=99] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (99 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 51 (0.00312768); expected 326.1 (0.02) Passed bias filter: 44 (0.00269839); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.45 # Mc/sec: 629.38 // Query: T015057_3 [L=99] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (99 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.45 # Mc/sec: 629.38 // Query: T001521_1 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.53 # Mc/sec: 16582.02 // Query: T001521_2 [L=3071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.53 # Mc/sec: 16576.62 // Query: T001521_3 [L=3071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.26s 00:00:01.21 Elapsed: 00:00:00.53 # Mc/sec: 16576.62 // Query: T138457_1 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1152 (0.0706488); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 125 (0.00766589); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.35s 00:00:02.15 Elapsed: 00:00:00.64 # Mc/sec: 7366.64 // Query: T138457_2 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1398 (0.0857353); expected 326.1 (0.02) Passed bias filter: 453 (0.0277812); expected 326.1 (0.02) Passed Vit filter: 337 (0.0206672); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.32s 00:00:02.19 Elapsed: 00:00:00.59 # Mc/sec: 7990.93 // Query: T138457_3 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 622 (0.0381455); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 122 (0.00748191); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.34s 00:00:02.04 Elapsed: 00:00:00.67 # Mc/sec: 7036.79 // Query: T235996_1 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.8 8.7 6.1 0.17 12.0 0.5 2.3 2 zf-AN1 AN1-like Zinc finger Domain annotation for each model (and alignments): >> zf-AN1 AN1-like Zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.5 1e-05 0.17 9 30 .. 116 135 .. 111 137 .. 0.83 2 ? -3.5 0.8 0.72 1.2e+04 30 37 .. 384 391 .. 382 393 .. 0.73 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1e-05 zf-AN1 9 kdflpfkCryCgkvFClkHrlp 30 ++ f C++C vFC H +p T235996_1 116 RL--FFICPKCLDVFCPLHFTP 135 34..4**************987 PP == domain 2 score: -3.5 bits; conditional E-value: 0.72 zf-AN1 30 pedHdCkk 37 p +H+C++ T235996_1 384 PCTHQCTG 391 66899986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.47 # Mc/sec: 6348.61 // Query: T235996_2 [L=1043] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1043 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.47 # Mc/sec: 6348.61 // Query: T235996_3 [L=1042] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1042 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 6210.39 // Query: T088590_1 [L=1685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1203 (0.0737765); expected 326.1 (0.02) Passed bias filter: 215 (0.0131853); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.28s 00:00:01.35 Elapsed: 00:00:00.54 # Mc/sec: 8926.85 // Query: T088590_2 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0021 17.0 0.0 0.0021 17.0 0.0 2.7 3 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.7 8.5e-05 1.4 136 169 .. 797 834 .. 790 911 .. 0.58 2 ? -6.7 5.5 1 1.6e+04 67 163 .. 963 979 .. 951 986 .. 0.36 3 ! 17.0 0.0 1.3e-07 0.0021 114 172 .. 1025 1102 .. 993 1479 .. 0.65 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 8.5e-05 PHO4 136 lfllvrrlil....lkaalkllpllvlltvainaflil 169 ++++v+++++ +++++ ++ ++v++++++++++++ T088590_2 797 MVMVVMMIVMvmviMMMMVMVMMVMVIMMMMVMVMMVM 834 22222222111111122222222222222222222222 PP == domain 2 score: -6.7 bits; conditional E-value: 1 PHO4 67 mlaallaaavwlllatylglPvStthslvGaliGaalaaagsavkwgglvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvai 163 m+++++ ++++++v++ T088590_2 963 MVIMMVVM--------------------------------------------------------------------------------IVMVMMVMV 979 11111111................................................................................111111111 PP == domain 3 score: 17.0 bits; conditional E-value: 1.3e-07 PHO4 114 glvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvainaflilyk...................l 172 ++ v+++v+ +l+ +++ ++++++v ++++++ + ++ ++++++v++++++i+++ + T088590_2 1025 VMMVMVMMMVVMVLVMMVVMVMVMMMVVVMVMIMMVMVIMMVMMMVMVMMVMVMIVMEkiitiiidiltlrdahvlrV 1102 111122222222222222222222222222224444555555555555555555555455555544444444443330 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1498 (0.091868); expected 326.1 (0.02) Passed bias filter: 375 (0.0229977); expected 326.1 (0.02) Passed Vit filter: 239 (0.0146572); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.49u 0.31s 00:00:01.80 Elapsed: 00:00:00.62 # Mc/sec: 7770.38 // Query: T088590_3 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 787 (0.0482644); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.51 # Mc/sec: 9446.35 // Query: T122299_1 [L=697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 4069.38 // Query: T122299_2 [L=697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.46 # Mc/sec: 4334.78 // Query: T122299_3 [L=696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-22 77.5 0.2 8.9e-22 76.6 0.2 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.6 0.2 5.5e-26 8.9e-22 15 74 .. 206 265 .. 206 265 .. 0.96 Alignments for each domain: == domain 1 score: 76.6 bits; conditional E-value: 5.5e-26 Transposase_1 15 getpkkvpkpelhqkk.vmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekr 74 +e+pk++pkp+l+ +k vml VwWsa+ li+y+fl+pg+titse+Yaqq+++++qklq+++ T122299_3 206 EEAPKHFPKPNLQ-EK*VMLPVWWSAACLIHYNFLNPGKTITSEKYAQQINEMHQKLQRLQ 265 699*******776.9*******************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.48 # Mc/sec: 4148.20 // Query: T203337_1 [L=1497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.49 # Mc/sec: 8740.13 // Query: T203337_2 [L=1497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1497 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 8080.50 // Query: T203337_3 [L=1496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-104 348.3 15.3 7.8e-104 347.3 15.3 1.4 1 Transposase_22 L1 transposable element 1.6e-33 116.0 0.2 3.1e-33 115.0 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly ------ inclusion threshold ------ 0.017 15.0 4.1 0.6 10.0 0.8 2.4 2 DUF1664 Protein of unknown function (DUF1664) 0.026 14.3 2.0 0.058 13.2 2.0 1.5 1 Sec34 Sec34-like family 0.049 14.0 5.6 0.12 12.7 5.6 1.6 1 Spectrin Spectrin repeat 0.075 13.2 13.1 0.023 14.8 8.5 2.2 2 zf-C4H2 Zinc finger-containing protein 0.17 12.0 4.4 0.53 10.4 4.4 1.9 1 KLRAQ Predicted coiled-coil domain-containing prote 0.22 9.3 2.5 0.38 8.5 2.5 1.3 1 Prominin Prominin 0.22 11.9 2.7 1.6 9.1 2.8 2.4 1 DUF16 Protein of unknown function DUF16 0.52 10.4 6.3 0.2 11.7 2.4 2.4 2 Med2 Mediator complex subunit 2 0.61 10.5 9.5 0.1 13.1 5.2 1.9 1 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 347.3 15.3 5.2e-107 7.8e-104 32 307 .. 649 893 .. 635 898 .. 0.96 Alignments for each domain: == domain 1 score: 347.3 bits; conditional E-value: 5.2e-107 XX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX..................XXXXXXXXXXXXXX CS Transposase_22 32 atteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee......ntekqlkiikekqentskqvmemnkellelktkvdelkk 118 at e++++++df+elr+e++ + ++y+el e+i++k+ke+e ++k++ee ntek+lk el+elktk++el++ T203337_3 649 AT--EQSWMENDFDELREEGF-R*SNYSELWEDIQTKGKEVEkFEKNLEEcitritNTEKCLK------------------ELMELKTKARELRE 722 44..9***************9.7779************************8888888888888..................9************* PP XXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHH CS Transposase_22 119 eqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkkleniln 213 e++ sl+sr+d+lee vsa+ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrliGv+es+ e++ klen+l+ T203337_3 723 ECR------------------SLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGSKLENTLQ 799 ***..................************************************************************************** PP HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH.HHHHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl.karrewtdviqilke 307 +ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhiivr+tkv++k+k+l+a+rekGr+tlkGkPirltadlsaetl rrew+++++ilk T203337_3 800 DIIQENFPNLARQANVQIQEIRRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRITLKGKPIRLTADLSAETL*A-RREWGPIFNILKR 893 *****************************************************************************9555.9**********95 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 115.0 0.2 2.1e-36 3.1e-33 6 158 .. 1113 1269 .. 1104 1279 .. 0.95 Alignments for each domain: == domain 1 score: 115.0 bits; conditional E-value: 2.1e-36 .S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 ++++Rpisl+++d k+lnk++a++++++++kl++++q+gf pg + + ++ +++++++++k k+++++++D +kaFd+++ ++ l++l++++++ T203337_3 1113 KENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRAKDKNHMIVSVDAEKAFDKIQQPFMLKTLNKLGIDG 1210 369**************************************************999****9************************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 + ++i+++ ++++++ +ng++ e ++ k+g++qG++l Pllfn++ + l r +r++ T203337_3 1211 TYFKIIRAISDKPTANIILNGQKLEAFPLKTGTRQGCPLLPLLFNIVSEVLARAIRQEK 1269 **********************99********************************975 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.8 0.0004 0.6 55 120 .. 684 748 .. 672 752 .. 0.56 2 ? 5.6 0.1 0.0093 14 55 113 .. 943 1000 .. 939 1014 .. 0.86 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.0004 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 +++++ ++L++ i r+ ++ +++ + e+k + e+re+ +++++ ++++e v+ +e ++e+ T203337_3 684 KEVEKFEKNLEECITRITNT-EKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEM 748 45555555555555555443.444444445555566666666666666666666666666666655 PP == domain 2 score: 5.6 bits; conditional E-value: 0.0093 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegL 113 +++++ + + +ri+++d+ l ++ k k++++++++d +i +d +++++++++ T203337_3 943 KKINESRSWFFERINKIDRPLARLIKK-KREKNQIDTIKNDKGDITTDPTEIQTTIREY 1000 6789999999***********999875.55699********************999875 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 2.0 3.9e-05 0.058 3 59 .. 687 743 .. 685 753 .. 0.88 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 3.9e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrlee 59 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + +e+ T203337_3 687 EKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMED 743 78999*******************************************887666665 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 5.6 8.2e-05 0.12 2 94 .. 685 775 .. 684 778 .. 0.94 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 8.2e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++++l ++++ l+ ++ +e+v a ++ +++ eg++ +++i+ + l+e W+ +k+ T203337_3 685 EVEKFEKNLEECITRITNTEKCL--KELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 775 679********************..7777899999*****************************************************99875 PP >> zf-C4H2 Zinc finger-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 8.5 1.6e-05 0.023 4 159 .. 678 833 .. 676 851 .. 0.77 2 ? -0.5 0.1 0.76 1.1e+03 84 118 .. 985 1019 .. 940 1087 .. 0.51 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.6e-05 zf-C4H2 4 eirektleleklknklakevealekeekcleey...kkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeeinelr 100 +i++k +e+ek +++l + + ++++ekcl+e k + +L++E ++ ++++ ++a+E+ ++e + e + + +++k+ + ++++ + + + T203337_3 678 DIQTKGKEVEKFEKNLEECITRITNTEKCLKELmelKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRP- 776 7999999*********************99876111567789999999999999******************************999999999888654. PP zf-C4H2 101 selglekledleeeeeellkeeifekkesstapapplpptsllsklsqapsapstatas 159 +l l +++ + e+++ l++++ + +++ p+ + + + ++++++p++ s+ a+ T203337_3 777 -NLRLIGVPESDGENGSKLENTL-QDIIQENFPNLARQANVQIQEIRRTPQRYSSRRAT 833 .4666666777777777777766.54444455554445556666677777765544444 PP == domain 2 score: -0.5 bits; conditional E-value: 0.76 zf-C4H2 84 klyeeykklkeeinelrselglekledleeeeeel 118 ++++ ++++++i e ++l +kle+lee ++ l T203337_3 985 DITTDPTEIQTTIREYYKHLYTNKLENLEEMDKFL 1019 22233333333333333333333333333333222 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 4.4 0.00036 0.53 31 89 .. 706 763 .. 674 771 .. 0.75 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00036 KLRAQ 31 lkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 +el e +++ r ++E sL r +qLe v+++ +e++e +++ +k ++k ++++ T203337_3 706 CLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKRE-GKFREKRIKRNE 763 33445555566788889************************98755.665533333332 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 2.5 0.00026 0.38 229 352 .. 692 823 .. 671 842 .. 0.74 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00026 Prominin 229 tlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCskilssleiekldtskcl.........dqlp 318 +le+ + +++ e+ l++l e k++ +++++ +Lr+ +qL++ ++++ +++n++ + + + e+ k ++++ +e++d+ k + + T203337_3 692 NLEEC-ITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREgKFR-EKRIKRNEQSLQEIWDYVKRPnlrligvpeSDGE 789 44444.55566677778888888888888888888888888888888888888888888886666.4444444444455788776655444333355558 PP Prominin 319 nvdevlealeevletnlssivkeglarlneipek 352 n +++ ++l++++++n+ +++++++ +++ei+++ T203337_3 790 NGSKLENTLQDIIQENFPNLARQANVQIQEIRRT 823 899999*************************987 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 2.8 0.0011 1.6 32 99 .. 713 780 .. 680 783 .. 0.79 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.0011 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS DUF16 32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 k++ +++ ++ ++l + ++le+ v++ +++++e+k e k +++++++ +++l+ i + +++ n Rl T203337_3 713 LKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRL 780 3455566667777999****************************************999888877776 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 2.4 0.00014 0.2 48 95 .. 683 730 .. 673 736 .. 0.86 2 ? -3.2 0.0 6.1 9e+03 4 15 .. 792 803 .. 790 818 .. 0.83 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00014 Med2 48 kekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 ++++kF++ L + ++++++++++++l+e k++ +e++e ++ r r T203337_3 683 GKEVEKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSR 730 5789*******************************9999976666655 PP == domain 2 score: -3.2 bits; conditional E-value: 6.1 Med2 4 nkLtqclddiLk 15 +kL+++l+di++ T203337_3 792 SKLENTLQDIIQ 803 699999999987 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 5.2 6.8e-05 0.1 14 95 .. 686 773 .. 672 775 .. 0.66 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 6.8e-05 Syntaxin-6_N 14 lnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreev 95 ++k e+ +++ +++ ++++ ++ el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + v T203337_3 686 VEKFEKNLEECiTRITNTEKClKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDemneMKREGKFREKRIKRNEQSLQEIWDYV 773 33333333333333333333345899***************************99987332222447778888888888887776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 971 (0.0595486); expected 326.1 (0.02) Passed bias filter: 395 (0.0242242); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 7642.50 // Query: T236043_1 [L=4283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.59 # Mc/sec: 20767.69 // Query: T236043_2 [L=4283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.59 # Mc/sec: 20767.69 // Query: T236043_3 [L=4283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.30s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 20767.69 // Query: T089735_1 [L=2835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.57 # Mc/sec: 13983.54 // Query: T089735_2 [L=2835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 14482.95 // Query: T089735_3 [L=2834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.78 # Mc/sec: 10394.35 // Query: T070178_1 [L=2337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.71 # Mc/sec: 9416.56 // Query: T070178_2 [L=2337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.82 # Mc/sec: 8153.37 // Query: T070178_3 [L=2337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.70 # Mc/sec: 9551.09 // Query: T351468_1 [L=3239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.65 # Mc/sec: 14255.74 // Query: T351468_2 [L=3239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-22 80.2 1.3 2.2e-22 79.5 1.3 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 3.2e-10 40.1 0.0 5.3e-10 39.4 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.3e-07 31.3 1.1 2.9e-07 30.2 1.1 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.5 1.3 4.1e-26 2.2e-22 1 121 [. 3107 3236 .. 3107 3239 .] 0.96 Alignments for each domain: == domain 1 score: 79.5 bits; conditional E-value: 4.1e-26 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK g ++++Rp+sl+++d k+lnkl+a+r++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ + l T351468_2 3107 IPKSGrdttkKENFRPVSLMNIDAKILNKLLANRIQQHIKKLIHHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQCFML 3204 788888888889***************************************************99999999999999********************* PP GGGG-EEET....................... CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvnge 121 ++l++++++ + ++i +++ ++++++ +ng+ T351468_2 3205 KTLNKLGIDGTYFKIITAIYDKPTANIILNGQ 3236 ***************************99997 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.0 9.8e-14 5.3e-10 1 113 [] 2601 2820 .. 2601 2820 .. 0.85 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 9.8e-14 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T351468_2 2601 LTLNVNG----LNAPIKKHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSDKTDFKpskikrdkeghyimv 2690 699****....7888999*******************99988877766668866677888899999*****99999777788999999**9999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T351468_2 2691 kgsiqqegliilniyapntgaprfikqvlsdlqrdldshTLIMGDFNTplstldrsmrqkvnkdtqvlnsalhqadlidiyrtlhpksteytff 2784 9999999*9999999999999999999999999999999999******9999999999999999999999999999999999999998888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T351468_2 2785 saphntysKIDHILGSKALLSKCKRTEIITNYlSDH 2820 8888888888*****985544444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 1.1 5.3e-11 2.9e-07 2 118 .. 2700 2823 .. 2699 2824 .. 0.81 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 5.3e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 i ++Y p++ + + +++ l++l ++l+s +++i+GDfN + + + +++ ++ + L + l++ +l + ++k++ tf s + T351468_2 2700 IILNIYAPNTG-APRFIKQVLSDLQRDLDS-HTLIMGDFNTPLSTLDRSMRQKvNKDTQVLNSALHQADLIDIyrtLHPKSTeYTFFSAPHn 2789 58899**9999.777777777788788876.89*************998877789999***********98666664444444777554444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH+ i T351468_2 2790 tYSKIDHILGSKALLSKckRTEIITNYLSDHSTI 2823 58***************98666779******987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 965 (0.0591807); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.60u 0.29s 00:00:01.89 Elapsed: 00:00:00.83 # Mc/sec: 11164.13 // Query: T351468_3 [L=3239] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-151 503.0 20.2 4.9e-151 502.6 20.2 1.1 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.096 12.8 3.5 0.23 11.6 3.5 1.6 1 KLRAQ Predicted coiled-coil domain-containing prote 0.18 11.9 5.7 0.31 11.1 5.7 1.4 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 4.3 7.0 8.5 11 5.6 8.5 1.6 1 IncA IncA protein Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 502.6 20.2 1.2e-154 4.9e-151 1 368 [] 2231 2566 .. 2231 2566 .. 0.98 Alignments for each domain: == domain 1 score: 502.6 bits; conditional E-value: 1.2e-154 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPa e++++++df+elr+e++++++y+el e+ ++k+ke+e ++k++ee ntek+lk T351468_3 2231 MGKKQ---SRKTGNSKKQSASPPPKERSSSPAM--EQSWMENDFDELREEGFRRSNYSELWEDSQTKGKEVEnFEKNLEEcitritNTEKCLK 2318 79999...9************************..*********************************************8888888888888 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidr.evkerekrkkileq 178 el+elk+k++el++e++ sl+sr d+leervsa+ede++e+ + e+k+rekr+k++eq T351468_3 2319 ------------------ELMELKAKARELHEECR------------------SLRSRHDQLEERVSAMEDEVNEM-K*EGKFREKRIKRNEQ 2374 ..................9****************..................**********************9.5559************ PP HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 slq+i+d+vkrPnlrliGv+es+ e+ +klen+l++i +enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rek T351468_3 2375 SLQEIWDYVKRPNLRLIGVPESDGENETKLENTLQDINQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREK 2467 ********************************************************************************************* PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 GrvtlkGkPirl ad+saetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T351468_3 2468 GRVTLKGKPIRLPADFSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 2560 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 l++++ T351468_3 2561 LLQNHA 2566 ****96 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 3.5 5.8e-05 0.23 30 79 .. 2315 2371 .. 2301 2383 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 5.8e-05 KLRAQ 30 elkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeee.......Kkvsk 79 + +el e +++ r ++E sL r +qLe rv+++ +e++e + K++ + T351468_3 2315 KCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNEMK*egkfreKRIKR 2371 4445566666778999**************************988875333222222 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 5.7 7.7e-05 0.31 6 99 .. 2264 2357 .. 2260 2359 .. 0.96 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 7.7e-05 HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 ++ +++++++e +R +++++ ++ ++ ++ ++ lee+ ++ + k +++++ k++a el +e ++l + ++le++++++e+e+++ T351468_3 2264 WMENDFDELREEGFRRSNYSELWEDSQTKGKEVENFEKNLEECITRITNTEKCLKELMELKAKARELHEECRSLRSRHDQLEERVSAMEDEVNE 2357 7889***************************************************************************************987 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 8.5 0.0026 11 121 185 .. 2284 2353 .. 2243 2386 .. 0.52 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0026 IncA 121 lq.eelksvesrlesleesikelakeirelr....elsdlkeevqelrselerlqedlqrlqqkiaelqr 185 ++ e+ +++++++e++e++++e +i++++ el +lk + +el +e+++l++++++l+++++ ++ T351468_3 2284 ELwEDSQTKGKEVENFEKNLEECITRITNTEkclkELMELKAKARELHEECRSLRSRHDQLEERVSAMED 2353 3334444444444444444444444444444444444444444444444444444444444443333322 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3239 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 759 (0.0465473); expected 326.1 (0.02) Passed bias filter: 249 (0.0152705); expected 326.1 (0.02) Passed Vit filter: 55 (0.00337299); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.46u 0.31s 00:00:01.77 Elapsed: 00:00:00.74 # Mc/sec: 12521.93 // Query: T370043_1 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.75 # Mc/sec: 7018.57 // Query: T370043_2 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 8098.35 // Query: T370043_3 [L=1840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 7741.07 // Query: T235916_1 [L=5370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.35s 00:00:02.45 Elapsed: 00:00:00.89 # Mc/sec: 17261.41 // Query: T235916_2 [L=5370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.43s 00:00:02.40 Elapsed: 00:00:00.81 # Mc/sec: 18966.24 // Query: T235916_3 [L=5370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 503 (0.0308475); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.34s 00:00:02.14 Elapsed: 00:00:00.73 # Mc/sec: 21044.74 // Query: T174435_1 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 5370.98 // Query: T174435_2 [L=1164] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1164 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.68 # Mc/sec: 4897.07 // Query: T174435_3 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 5118.69 // Query: T094055_1 [L=1133] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1133 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 361 (0.0221391); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.76 # Mc/sec: 4264.90 // Query: T094055_2 [L=1132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 4906.76 // Query: T094055_3 [L=1132] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.077 13.3 8.7 0.18 12.1 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 8.7 1.1e-05 0.18 8 50 .. 598 640 .. 597 647 .. 0.88 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.1e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094055_3 598 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 640 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1132 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 330 (0.0202379); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.70 # Mc/sec: 4626.37 // Query: T263567_1 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 886 (0.0543358); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 4305.31 // Query: T263567_2 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 474 (0.0290691); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 3979.15 // Query: T263567_3 [L=917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 804 (0.049307); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.68 # Mc/sec: 3857.91 // Query: T238054_1 [L=1131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 69 (0.00423157); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.70 # Mc/sec: 4622.28 // Query: T238054_2 [L=1131] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1131 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 73 (0.00447688); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.67 # Mc/sec: 4829.25 // Query: T238054_3 [L=1130] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1130 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.61 # Mc/sec: 5299.57 // Query: T316679_1 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.57 # Mc/sec: 7452.96 // Query: T316679_2 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 7086.42 // Query: T316679_3 [L=1511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.1 7.7 6.4 4.8 7.1 6.4 1.1 1 PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus Domain annotation for each model (and alignments): >> PRP9_N Pre-mRNA-splicing factor PRP9 N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 6.4 0.00029 4.8 51 87 .. 238 274 .. 226 300 .. 0.77 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00029 PRP9_N 51 sdisknkiykskkskrsrkqillQqhEinlFledykk 87 ++ +++iyk+++ +r+++q Qq+ ++l+ ++ + T316679_3 238 AQKPSEDIYKNRRRRRQQQQQQQQQQQLDLLFHQRIQ 274 477899***********************98876543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 646 (0.0396173); expected 326.1 (0.02) Passed bias filter: 355 (0.0217711); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.60 # Mc/sec: 7204.52 // Query: T337168_1 [L=5775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.01u 0.37s 00:00:03.38 Elapsed: 00:00:00.92 # Mc/sec: 17957.93 // Query: T337168_2 [L=5775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.41s 00:00:02.13 Elapsed: 00:00:00.77 # Mc/sec: 21456.22 // Query: T337168_3 [L=5774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.41s 00:00:02.11 Elapsed: 00:00:00.76 # Mc/sec: 21734.78 // Query: T139525_1 [L=2894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.78 # Mc/sec: 10614.41 // Query: T139525_2 [L=2893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.30s 00:00:01.47 Elapsed: 00:00:00.84 # Mc/sec: 9852.83 // Query: T139525_3 [L=2893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.64 # Mc/sec: 12931.85 // Query: T217363_1 [L=2253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 693 (0.0424997); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.67 # Mc/sec: 9620.07 // Query: T217363_2 [L=2253] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2253 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 844 (0.0517601); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.69 # Mc/sec: 9341.23 // Query: T217363_3 [L=2252] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2252 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1000 (0.0613271); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.34s 00:00:01.64 Elapsed: 00:00:00.68 # Mc/sec: 9474.40 // Query: T164829_1 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 3141.41 // Query: T164829_2 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 3025.06 // Query: T164829_3 [L=570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 2547.93 // Query: T229246_1 [L=2648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 15.7 0.3 0.032 14.2 0.3 1.7 1 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.3 2e-06 0.032 4 29 .. 861 886 .. 860 889 .. 0.92 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229246_1 861 VWGASCPAPHNPCRLQLELCGPCQKR 886 5**********************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 472 (0.0289464); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.73 # Mc/sec: 10377.37 // Query: T229246_2 [L=2648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 499 (0.0306022); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.28s 00:00:01.38 Elapsed: 00:00:00.61 # Mc/sec: 12418.82 // Query: T229246_3 [L=2647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 10233.27 // Query: T138443_1 [L=2634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.68 # Mc/sec: 11081.51 // Query: T138443_2 [L=2633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 11412.98 // Query: T138443_3 [L=2633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 789 (0.0483871); expected 326.1 (0.02) Passed bias filter: 255 (0.0156384); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.35s 00:00:01.83 Elapsed: 00:00:00.75 # Mc/sec: 10043.42 // Query: T159475_1 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.84 # Mc/sec: 7121.42 // Query: T159475_2 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.64 # Mc/sec: 9346.87 // Query: T159475_3 [L=2090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 10308.85 // Query: T062889_1 [L=21409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-13 51.2 0.0 2.2e-13 50.5 0.0 1.3 1 RNase_H RNase H 6.9e-11 41.5 0.3 1.5e-10 40.3 0.3 1.5 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 0.0 2.7e-17 2.2e-13 3 109 .. 5139 5245 .. 5137 5254 .. 0.83 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 2.7e-17 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 +++++ DGs+++ ++++ag+ v++ +++ + +a+l++ +t ++aEL+A++ +L+ + ++ ++niytDSkY+++ +++ + w +++ tt+ + T062889_1 5139 DHTWFIDGSSSKPnqFSPAKAGYaVVS-HTSIMEAAALPPSTTSQQAELIALTRVLSfT--EGMHINIYTDSKYAFHFLHNHFAIWAERGFLTTQGS- 5232 679******998734556699*95555.434567788899*****************77..99***********************99999776666. PP BHTTHHHHHHHHH CS RNase_H 97 pvknkelaellke 109 ++n++l+++l + T062889_1 5233 FIVNASLIKALLK 5245 5999999888744 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.3 0.3 1.9e-14 1.5e-10 300 356 .. 6493 6550 .. 6492 6556 .. 0.90 Alignments for each domain: == domain 1 score: 40.3 bits; conditional E-value: 1.9e-14 HHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT.T-S CS Transposase_22 300 dviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke.kne 356 d++++lke+ +q r+ly k+s+ + i +f d +klr+++s rPalk+++k + T062889_1 6493 DILKLLKENYCQSRVLYLEKISFKNENKINMFLDEQKLREFISSRPALKEIVKGiFRQ 6550 89**************************************************984333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (21409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1479 (0.0907028); expected 326.1 (0.02) Passed bias filter: 269 (0.016497); expected 326.1 (0.02) Passed Vit filter: 162 (0.00993499); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 10.40u 0.95s 00:00:11.35 Elapsed: 00:00:01.52 # Mc/sec: 40294.41 // Query: T062889_2 [L=21408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-34 117.9 3.0 4.7e-34 117.9 3.0 2.2 2 TLV_coat ENV polyprotein (coat polyprotein) 4.3e-07 29.3 0.7 1e-06 28.1 0.7 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 117.9 3.0 5.7e-38 4.7e-34 424 561 .] 5761 5894 .. 5754 5894 .. 0.89 2 ? -21.6 22.3 2 1.6e+04 77 117 .. 16736 16779 .. 16594 16839 .. 0.54 Alignments for each domain: == domain 1 score: 117.9 bits; conditional E-value: 5.7e-38 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXX CS TLV_coat 424 qqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegl 521 ++f++ +++ + + +++++ l+ +++sla vvlQNR GLDlL++++GGlC L+EeCCFy ++sg+v d+i+kL++r ++ ++++ + l T062889_2 5761 TTFRSFSNNFSASIADISQTLLILQAQVDSLAAVVLQNRQGLDLLTAKKGGLCIFLNEECCFYLNQSGLVYDNIKKLKDRAQKLAIQVNNYAEPPWAL 5858 689999**************************************************************************987655554443332267 PP XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 522 lglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 + w++++l +pL+ + L+Ll+ Pc++ + q+i+ T062889_2 5859 SNWMSWVLPIL----SPLIPVFLLLLFVPCVFCLVSQFIQ 5894 77777777777....*****************99999996 PP == domain 2 score: -21.6 bits; conditional E-value: 2 XXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXX....XXX CS TLV_coat 77 lkpeCkkkpkr...tasaneklyvcPgearkraerrhcGglssl 117 + +C++ + +++++ c +++++ +r+hc l++ T062889_2 16736 HHHHCHHYLHHhhhHCHHHHHYHYCHHHNHHHHHRHHCHHLHHH 16779 22333333322221111122222222222222233333332222 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.1 0.7 1.2e-10 1e-06 2 19 .] 13323 13340 .. 13323 13340 .. 0.99 Alignments for each domain: == domain 1 score: 28.1 bits; conditional E-value: 1.2e-10 DUF1725 2 FagKWMELEnIILSEisQ 19 Fag+WM+LE+IILS+ +Q T062889_2 13323 FAGTWMKLETIILSKLTQ 13340 9****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (21408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1067 (0.065436); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 6.83u 0.55s 00:00:07.38 Elapsed: 00:00:01.09 # Mc/sec: 56187.75 // Query: T062889_3 [L=21408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (21408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1638 (0.100454); expected 326.1 (0.02) Passed bias filter: 284 (0.0174169); expected 326.1 (0.02) Passed Vit filter: 186 (0.0114068); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 9.85u 0.82s 00:00:10.67 Elapsed: 00:00:01.30 # Mc/sec: 47111.27 // Query: T193791_1 [L=1962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1078 (0.0661106); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 140 (0.0085858); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.33u 0.52s 00:00:03.85 Elapsed: 00:00:01.07 # Mc/sec: 5245.75 // Query: T193791_2 [L=1962] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1962 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 932 (0.0571569); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 95 (0.00582608); expected 16.3 (0.001) Passed Fwd filter: 28 (0.00171716); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.62u 0.44s 00:00:03.06 Elapsed: 00:00:00.98 # Mc/sec: 5727.50 // Query: T193791_3 [L=1961] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1961 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 920 (0.0564209); expected 326.1 (0.02) Passed bias filter: 240 (0.0147185); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.47u 0.46s 00:00:03.93 Elapsed: 00:00:00.98 # Mc/sec: 5724.58 // Query: T158519_1 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2120.38 // Query: T158519_2 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 2120.38 // Query: T158519_3 [L=378] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (378 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2120.38 // Query: T379419_1 [L=924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 5183.15 // Query: T379419_2 [L=924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.55 # Mc/sec: 4806.19 // Query: T379419_3 [L=923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 13.8 0.0 0.067 12.9 0.0 1.4 1 Homeobox Homeobox domain Domain annotation for each model (and alignments): >> Homeobox Homeobox domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 4.1e-06 0.067 6 45 .. 635 674 .. 634 675 .. 0.94 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 4.1e-06 SS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHH CS Homeobox 6 tftkeqleeLeelFeenrypsaeereeLAkklgLeerqVk 45 +f++ l+eL + F ++ y++ +r++LA ++++e+ V T379419_3 635 AFSRLHLKELDSIFPRSEYLDVFARKQLAICMDVSEAEVE 674 588899******************************9995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 5281.09 // Query: T325794_1 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 13099.30 // Query: T325794_2 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.50 # Mc/sec: 13623.27 // Query: T325794_3 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.50 # Mc/sec: 13623.27 // Query: T353295_1 [L=3341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.52 # Mc/sec: 18380.83 // Query: T353295_2 [L=3341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 17067.92 // Query: T353295_3 [L=3341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.31s 00:00:01.61 Elapsed: 00:00:00.80 # Mc/sec: 11947.54 // Query: T214279_1 [L=2091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.26s 00:00:01.25 Elapsed: 00:00:00.84 # Mc/sec: 7121.42 // Query: T214279_2 [L=2090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.76 # Mc/sec: 7867.28 // Query: T214279_3 [L=2090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.70 # Mc/sec: 8541.62 // Query: T368557_1 [L=4504] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4504 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.35s 00:00:01.95 Elapsed: 00:00:00.75 # Mc/sec: 17180.24 // Query: T368557_2 [L=4503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.37s 00:00:01.87 Elapsed: 00:00:00.65 # Mc/sec: 19818.95 // Query: T368557_3 [L=4503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.40s 00:00:01.89 Elapsed: 00:00:00.81 # Mc/sec: 15904.10 // Query: T032051_1 [L=8223] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8223 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.35u 0.40s 00:00:02.75 Elapsed: 00:00:00.83 # Mc/sec: 28342.90 // Query: T032051_2 [L=8222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.40u 0.40s 00:00:02.80 Elapsed: 00:00:00.83 # Mc/sec: 28339.45 // Query: T032051_3 [L=8222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.46s 00:00:02.94 Elapsed: 00:00:00.98 # Mc/sec: 24001.78 // Query: T172341_1 [L=1402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 6366.48 // Query: T172341_2 [L=1402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 8021.77 // Query: T172341_3 [L=1401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 24.6 0.0 4.1e-05 23.7 0.0 1.4 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 0.0 2.5e-09 4.1e-05 5 55 .. 149 200 .. 146 211 .. 0.85 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 2.5e-09 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaL 55 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172341_3 149 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRAS 200 68*******99999******766766.557778999**************995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 7562.31 // Query: T064239_1 [L=6237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.46s 00:00:02.36 Elapsed: 00:00:00.78 # Mc/sec: 22875.64 // Query: T064239_2 [L=6237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.42s 00:00:02.26 Elapsed: 00:00:00.73 # Mc/sec: 24442.46 // Query: T064239_3 [L=6236] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6236 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.36s 00:00:02.23 Elapsed: 00:00:00.86 # Mc/sec: 20744.34 // Query: T004721_1 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 4513.75 // Query: T004721_2 [L=994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.63 # Mc/sec: 4513.75 // Query: T004721_3 [L=993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 4657.06 // Query: T154130_1 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-07 30.3 0.1 3.5e-07 29.8 0.1 1.2 1 Gag_p30 Gag P30 core shell protein 0.00034 20.2 0.6 0.0011 18.5 0.1 2.0 2 Gag_MA Matrix protein (MA), p15 ------ inclusion threshold ------ 0.011 15.9 0.0 0.019 15.1 0.0 1.3 1 RVP Retroviral aspartyl protease 0.014 15.3 0.1 0.053 13.5 0.1 2.1 1 zf-CCHC Zinc knuckle 0.033 14.6 0.0 0.056 13.9 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.041 14.4 0.0 0.085 13.4 0.0 1.5 1 Asp_protease_2 Aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.8 0.1 1.3e-10 3.5e-07 120 210 .. 797 887 .. 794 888 .. 0.89 Alignments for each domain: == domain 1 score: 29.8 bits; conditional E-value: 1.3e-10 Gag_p30 120 arrptnlakvkevvqgkee.spaaflerlkeayrrytpydp.edpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +++p n + + +v+qgk e +p+afl++l+ea r+y+p ++q + fi+qsa+dir+klq+ e++l+ +++ a v++ r+ T154130_1 797 GKKPMNYSMMSTVTQGK-E*NPSAFLKQLREALRKYSPLSL*SLEGQLIQ-KDKFITQSAADIRRKLQKQALGPEQNLEAVLNLATSVFYNRD 887 89**************8.6669*****************98877887765.458***************99889999********99999886 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.1 4.1e-07 0.0011 6 91 .. 510 592 .. 504 625 .. 0.83 2 ? -1.5 0.1 0.64 1.7e+03 84 97 .. 2206 2219 .. 2202 2235 .. 0.82 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 4.1e-07 -..HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGG....GSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS CS Gag_MA 6 t..PLslllehfkdvraraknlsvevrkkklitlCsseWpt....lnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLved 91 t PL +l+h+ ++ ++ ++k++li +C++ Wp + +WP++G+ + ++i+++ +f++ +eG +pY+ ++ sL e+ T154130_1 510 TgsPLKCILSHWDQFDPQT------LKKRRLIFFCTTAWPQ*plpDGEKWPPKGSTNYDTILQLD--LFCK-REGKWSGIPYVQAFFSLREN 592 3359999999999887654......699***********9666446889************9986..6777.789999*****999998876 PP == domain 2 score: -1.5 bits; conditional E-value: 0.64 HHHHHHHS--TTT- CS Gag_MA 84 tWrsLvedPPpwvk 97 Wr+L+e+PP+ T154130_1 2206 LWRALMETPPEAQS 2219 6*********9765 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 7.1e-06 0.019 4 29 .. 1004 1029 .. 1001 1040 .. 0.91 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 7.1e-06 SSEEEEEETTEEEEEEE-TTBSSEEE CS RVP 4 rPllkvkiggkyieallDtGAdatvi 29 +P++++ i+g+ i +llDtGA +v+ T154130_1 1004 EPRVRLTIEGQEIDFLLDTGAAFSVL 1029 7***********************98 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 1.9e-05 0.053 4 17 .. 933 946 .. 933 947 .. 0.94 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.9e-05 SSSSSSSSTTTTST CS zf-CCHC 4 ynCGepGHiardCp 17 y CG GH+++dCp T154130_1 933 YQCGLLGHFKKDCP 946 89***********9 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 2.1e-05 0.056 2 23 .. 1008 1029 .. 1007 1044 .. 0.88 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 2.1e-05 EEEETTEEEEEEEETT-SS-EE CS gag-asp_proteas 2 evtingkpvkflvDTGAsstii 23 +ti+g++++fl+DTGA +++ T154130_1 1008 RLTIEGQEIDFLLDTGAAFSVL 1029 689***************9997 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 3.1e-05 0.085 1 23 [. 1007 1029 .. 1007 1039 .. 0.89 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 3.1e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttli 23 v++ti+G++++fllDTGa +++ T154130_1 1007 VRLTIEGQEIDFLLDTGAAFSVL 1029 6789**************98876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.67 # Mc/sec: 9957.40 // Query: T154130_2 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 11704.31 // Query: T154130_3 [L=2332] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-19 68.4 0.0 9.1e-19 67.7 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.7 0.0 5.6e-23 9.1e-19 4 222 .] 1192 1355 .. 1189 1355 .. 0.87 Alignments for each domain: == domain 1 score: 67.7 bits; conditional E-value: 5.6e-23 TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET... CS RVT_1 4 kgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkl 101 + g++R++ d++ +n++++ L + p+ + s + +a++++ lDlk+aF+ +pl+ +++ l+af pt T154130_3 1192 LK-GQWRLV----QDLRPINEAVIP-LY--------PVVPNPYTLLS------------QIPEEAEWFMVLDLKDAFFCIPLHSDSQFLFAFEDPTD- 1262 55.788886....688888888888.44........44444444411............135678******************************65. PP ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 102 inliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 + + ++++lp G+ SP l ++ + l +l++ +g +l+Y+DD+l++++s+ ++q++ ++ ++l++ g+k++ T154130_3 1263 ---------------------HTSQLTWTVLPHGFRDSPHLLGQALAQDLGHLSS--PGTLVLQYVDDLLLATSSEASCQQATLDLLNFLANQGYKVS 1337 .....................4899*****************************9..8**************************************** PP GGG-EEE.....ESSEEETTEEE CS RVT_1 200 peKtklvlfsgkseevkyLGvtl 222 +K + +l ++vkyLG++l T154130_3 1338 RSKAQPCL-----QQVKYLGLIL 1355 *******5.....*******975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2332 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 9015.48 // Query: T089761_1 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 5074.67 // Query: T089761_2 [L=1152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 5070.27 // Query: T089761_3 [L=1152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1152 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 6591.35 // Query: T107058_1 [L=3304] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.25 11.6 0.7 0.38 11.0 0.7 1.2 1 DUF3566 Transmembrane domain of unknown function (DUF3566) Domain annotation for each model (and alignments): >> DUF3566 Transmembrane domain of unknown function (DUF3566) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.7 2.3e-05 0.38 2 40 .. 3005 3043 .. 3004 3053 .. 0.94 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 2.3e-05 DUF3566 2 rrarlqvsrvdpwSvlklsfllsvalfivlvvavavlyl 40 rra v+rv+p S+++ ++ sv +++ v+v l++ T107058_1 3005 RRAVCVVQRVSPESAVQCAVQCSVLRAVCSAVCVECLWF 3043 8999**********************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3304 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1287 (0.078928); expected 326.1 (0.02) Passed bias filter: 455 (0.0279038); expected 326.1 (0.02) Passed Vit filter: 111 (0.00680731); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.20u 0.48s 00:00:02.68 Elapsed: 00:00:00.82 # Mc/sec: 11527.05 // Query: T107058_2 [L=3303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1164 (0.0713848); expected 326.1 (0.02) Passed bias filter: 347 (0.0212805); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.73 # Mc/sec: 12944.28 // Query: T107058_3 [L=3303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.26 11.4 5.1 0.9 9.6 5.1 1.9 1 DUF4770 Domain of unknown function (DUF4770) 7.3 5.0 17.2 13 4.2 17.2 1.3 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> DUF4770 Domain of unknown function (DUF4770) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 5.1 0.00011 0.9 62 123 .. 604 688 .. 601 714 .. 0.67 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00011 DUF4770 62 DleaTlreLdriLPlpeeskkerkkqekkkkkrlklkkkkekkrkekekkkkknkkkls.......................pYf 123 D++ L +iL + +++kkerk+++kk k+r+++k+ +e++r++k+ kk+k+k++ Y+ T107058_3 604 DMTLLHSSLGKILSQKKKKKKERKRKRKKGKERKREKRASERERERKKRKKDKEKERPLalsrgtsadpllpkggscglqdfLYI 688 5666667899*****9999999999999877777777777777766666655554443367777777777777777777766443 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 17.2 0.0016 13 142 185 .. 618 692 .. 610 709 .. 0.57 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0016 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................ CS MIP-T3 142 ekrrpkekekekekkkkkekdrekekererekaserekkekkk...............................k 185 +k+++k+++k k kk k++k++++ +erere+++ +++kek++ + T107058_3 618 QKKKKKKERKRKRKKGKERKREKRASERERERKKRKKDKEKERplalsrgtsadpllpkggscglqdflyiaspR 692 333444444445555555555556666666666666666666666666667777777777777776666666552 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1261 (0.0773335); expected 326.1 (0.02) Passed bias filter: 515 (0.0315835); expected 326.1 (0.02) Passed Vit filter: 116 (0.00711395); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.44u 0.38s 00:00:02.82 Elapsed: 00:00:00.83 # Mc/sec: 11384.72 // Query: T129654_1 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 7816.67 // Query: T129654_2 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.57 # Mc/sec: 8760.06 // Query: T129654_3 [L=1776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 7583.33 // Query: T260187_1 [L=3570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-07 30.8 0.1 3.3e-07 30.2 0.1 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 5.7e-07 29.2 0.2 1.2e-06 28.2 0.2 1.4 1 Gag_p10 Retroviral GAG p10 protein ------ inclusion threshold ------ 0.16 12.0 0.0 0.25 11.4 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 0.1 6.1e-11 3.3e-07 5 125 .. 1090 1207 .. 1090 1211 .. 0.86 Alignments for each domain: == domain 1 score: 30.2 bits; conditional E-value: 6.1e-11 Gag_p24 5 kalkkaveqygpsspeviqlidalaeqa..lpkdlekllarvgssqlaaqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevl 100 k++k a+ qygp+ p+v ++ + + lp + +lla+++s+ +w ee + ++ nr + +i i++ +l g ++ + ql++ + T260187_1 1090 KQFKDACTQYGPTFPHVQMALQTFYTEVvlLP-LDCDLLAKSCSK-SISAWWSEEACLQ--AQLNRSN-GILITQAQLTGSDSFSDAYAQLNFDTLTT 1182 67899******************999998555.556788889995.5567888888888..8999999.67777778*****************99** PP Gag_p24 101 eqvrrlillalekiprsgsktesla 125 eqv++++++a+ek+ ++++ + s+ T260187_1 1183 EQVTKVCMRAWEKLHSPAQAPVSFT 1207 *****************99987765 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.2 2.2e-10 1.2e-06 20 77 .. 881 937 .. 876 943 .. 0.93 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 2.2e-10 Gag_p10 20 vsksklekflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwk 77 v ++++++++ ve++c WFpe+Gt+ ++ + v+k + + g +p++v+ w T260187_1 881 VTMKNMITLFRAVEKYCSWFPEKGTVYIKLCDSVRKAFR-KLVSAGYCVPITVWGAWC 937 778999*********************************.99999**********996 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 4.5e-05 0.25 21 70 .. 1671 1713 .. 1669 1714 .. 0.78 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 4.5e-05 EEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES- CS RNase_H 21 agavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDS 70 ag++ + + + is+++ ++ ++aEL+Avi+aL++ ++ +ni++ S T260187_1 1671 AGYIGPAD--KLISTSY---TSVQKAELIAVITALQD--FPKPLNIVSYS 1713 56666655..5666666...69**************9..99999999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.43u 0.30s 00:00:01.73 Elapsed: 00:00:00.67 # Mc/sec: 15243.53 // Query: T260187_2 [L=3569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-13 51.4 0.6 1.9e-13 50.6 0.6 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.6 0.6 1.1e-17 1.9e-13 2 88 .. 2254 2341 .. 2253 2345 .. 0.95 Alignments for each domain: == domain 1 score: 50.6 bits; conditional E-value: 1.1e-17 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX.. CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWer 88 a ++l q+ q+a++vn+ + n ++ + Q+ id+kl +++n l + v+ lG+ v sl+++++++C n C+T+ y +++ sW T260187_2 2254 AGMALHQSTQTAHFVNDWQANSTQMWNSQQGIDQKLANQINDLRHSVIWLGDRVVSLEHRMQMHCDWNTLDFCITPYSYIKTDhSWGN 2341 6789*************************************************************9999999*******99999**65 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:00.64 # Mc/sec: 15953.60 // Query: T260187_3 [L=3569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-39 135.4 0.0 3.1e-39 134.3 0.0 1.6 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 3.7e-29 101.7 0.0 5.4e-29 101.1 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 1.6e-27 94.9 0.1 3.3e-27 93.9 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 7.6e-05 21.8 0.0 0.00027 20.0 0.0 1.9 1 IN_DBD_C Integrase DNA binding domain 0.00056 19.7 1.2 0.00062 19.5 0.0 1.6 2 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.3 0.0 9.4e-43 3.1e-39 2 163 .. 1879 2037 .. 1878 2042 .. 0.91 Alignments for each domain: == domain 1 score: 134.3 bits; conditional E-value: 9.4e-43 HERV-K_env_2 2 vtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisig.yryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 +tw+d p e+y ndsvw+pg idd cpa+p eeg n+++g ypp+cl +apgc+ q w + s ++ h+vsg+sl p ++ T260187_3 1879 LTWIDAPAEIYTNDSVWMPGAIDDPCPAQPGEEGTAFNVTMG*K-YPPLCLRHAPGCIHLETQFWAAYLLETSATDKM-GHLVSGLSLSPLKQMK 1971 79************************************987554.8********************999999988776.59*********98887 PP HERV-K_env_2 96 qdf.syqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsg 163 + ++++p gkpcpk sk l+we+cv avil+n+ +g +idwap+g f ncs T260187_3 1972 GGVmGGTAYFQYKPAGKPCPKHFEGPSK---TLIWEDCVNSHAVILKNDSYGLVIDWAPKGYFKNNCSS 2037 6651556779*************99988...59**********************************96 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.1 0.0 1.7e-32 5.4e-29 1 221 [. 1272 1441 .. 1272 1442 .. 0.94 Alignments for each domain: == domain 1 score: 101.1 bits; conditional E-value: 1.7e-32 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCG.CCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkka.Fdsvpleellrkltafkv 97 ++Kk+ g++R++ +d++a+n++i+ + qpg++ + + +k + l+ Dl+ + F+++ l++ + +++af+v T260187_3 1272 VKKKS-GKWRMV----TDLRAINAVIKP---------MGAVQPGMPAPALI--------------PKDWPLIVSDLEEFfFFHIALHKSDCEKFAFTV 1341 68999.*****8....8***********.........***********666..............99**********97258**************** PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-.T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrel.rkrakgvtllrYaDDililskskeelqelleaveewlkes 194 p ++n++e+ ry++k+lpqG+ +SP++++l++ + l ++ ++ +++ ++l+Y+DDili++ + ++l +++++++++ e+ T260187_3 1342 P------------------SINNQEPVARYQWKVLPQGMLNSPTICQLYVGQELSPV*AR-FPDAYILHYIDDILISAPTDKKLIDCYQILSRCVTEA 1420 *..................45999**************************9999998875.699********************************** PP T--BEGGG-EEE.....ESSEEETTEE CS RVT_1 195 glkinpeKtklvlfsgkseevkyLGvt 221 gl+i+++K++ + ++v+yLG+ T260187_3 1421 GLHIAQDKIQQT------TPVQYLGMV 1441 ************......8******86 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.9 0.1 1e-30 3.3e-27 1 65 [. 1449 1513 .. 1449 1514 .. 0.97 Alignments for each domain: == domain 1 score: 93.9 bits; conditional E-value: 1e-30 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 pqk+q+rrd lktLNDfQkLlg+IN +rp+lgi+t+ L++LF++LrGdsdl spr+LT+eA L T260187_3 1449 PQKVQIRRDPLKTLNDFQKLLGNINYLRPTLGIPTYALSNLFSMLRGDSDLCSPRTLTPEALLDL 1513 6************************************************************8877 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 8.3e-08 0.00027 22 48 .. 1714 1740 .. 1713 1742 .. 0.93 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 8.3e-08 EEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 22 LikgrGavcvFPqdasdikwvPeRlvr 48 L+ grG++cv P d ++++wvP R ++ T260187_3 1714 LTCGRGYACVSPGDHQSPVWVPTRRLK 1740 889*********************988 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.2 2.5 8e+03 132 150 .. 701 721 .. 701 730 .. 0.80 2 ! 19.5 0.0 1.9e-07 0.00062 89 201 .] 2342 2450 .. 2337 2450 .. 0.78 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 2.5 HHH.HHHHHGCHHH..HHHHH CS GP41 132 klaqslannfksln..Wvsyi 150 ++ q++++nf+ ++ W + + T260187_3 701 QWCQNFISNFNFTSvlWSRPV 721 599*********998887655 PP == domain 2 score: 19.5 bits; conditional E-value: 1.9e-07 HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX........X CS GP41 89 vkkhlegiWnntevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslakslqq 186 vk hl+g + ++sld++kl+++i ++++++ ++ +++ld++a +l+ ++ + W++ i + i++ g+ + ++ +ll+ + l ++ ++ T260187_3 2342 VKGHLLG--RKDNLSLDTTKLKKQIFESSQAHLSIMPGAQTLDQVAENLYG-LNPTTWIKSI-GGSTIVNFGIMFLCLIGLLLVCRTSQIILCQNREN 2435 5666666..45689********************************99995.67779***65.56779999999888887777774443344555555 PP XX.......XXXXXX CS GP41 187 vraevqllllkkkkg 201 +a + + l+kkkg T260187_3 2436 EQAFIAMEHLHKKKG 2450 555688889999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.43u 0.33s 00:00:01.76 Elapsed: 00:00:00.69 # Mc/sec: 14797.54 // Query: T311041_1 [L=1857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 8049.34 // Query: T311041_2 [L=1856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 790 (0.0484484); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.81 # Mc/sec: 6555.19 // Query: T311041_3 [L=1856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-45 153.5 2.0 9.2e-45 152.7 2.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polym 0.0033 17.5 0.0 0.0071 16.5 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 152.7 2.0 1.1e-48 9.2e-45 17 222 .] 1106 1341 .. 1085 1341 .. 0.92 Alignments for each domain: == domain 1 score: 152.7 bits; conditional E-value: 1.1e-48 .-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET............ CS RVT_1 17 vdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksfls 110 +k+lnk++a++++++++kl++++q+gf pg + + ++ ++++++++ k k+++++++D +kaFd+++ ++ l++l++++++ + +++i++++ T311041_3 1106 YHGKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGMYLKIIRAIYD 1203 578***************************************99999999999999****************************************** PP .............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--B CS RVT_1 111 trsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglki 198 +++++++ ng++ e ++ k+g++qG++lSPllfn++++ l r ++k+ ++v+l+++aDD++++ ++ q+ll+ ++++ k sg+ki T311041_3 1204 KPTANITPNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIKKEKeikriqlgkQEVKLSLFADDMIVYLGNPIIsSQNLLKLISNFSKVSGYKI 1301 ***********99*********************************99***************************5555******************* PP EGGG-EEE.....................ESSEEETTEEE CS RVT_1 199 npeKtklvlf............sg....kseevkyLGvtl 222 n +K++++l+ + s+++kyLG++l T311041_3 1302 NVQKSQAFLYtnnrqtvsqimsEHpftiASKRIKYLGIQL 1341 ********99999988887776115678*********986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 8.7e-07 0.0071 1 73 [. 724 794 .. 724 826 .. 0.85 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 8.7e-07 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfp 73 lt Nvng ++ + +la+++k++d+ v ++qE++ ++ +l+ ++ + ++++ gv++l++ + T311041_3 724 LTLNVNG----LNAAITRHRLANWIKRQDPSVCCIQETHLTCRDTYRLRIkgWRMIYQANGKHKKRGVGILVSDK 794 699****....66677899******************99999888877778855566777788888898888765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 485 (0.0297437); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.12u 0.29s 00:00:01.41 Elapsed: 00:00:00.68 # Mc/sec: 7808.38 // Query: T051670_1 [L=783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-07 31.2 20.2 72 3.0 0.4 13.1 13 CagY_M DC-EC Repeat Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.1 0.012 2e+02 17 23 .. 227 233 .. 225 235 .. 0.89 2 ! 1.9 0.6 0.0096 1.6e+02 16 23 .. 238 245 .. 228 246 .. 0.66 3 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 267 273 .. 265 274 .. 0.89 4 ! 1.9 0.0 0.0095 1.5e+02 17 23 .. 297 303 .. 294 304 .. 0.90 5 ! 3.0 0.4 0.0044 72 15 15 .. 321 321 .. 310 334 .. 0.48 6 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 533 539 .. 531 540 .. 0.89 7 ? 1.8 0.0 0.01 1.7e+02 17 23 .. 547 553 .. 546 554 .. 0.88 8 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 561 567 .. 559 568 .. 0.89 9 ! 2.3 0.0 0.0072 1.2e+02 17 23 .. 649 655 .. 646 661 .. 0.87 10 ! 2.2 0.0 0.008 1.3e+02 17 23 .. 665 671 .. 657 672 .. 0.87 11 ? 1.8 0.0 0.01 1.7e+02 17 23 .. 679 685 .. 678 686 .. 0.88 12 ? 1.5 0.0 0.013 2.1e+02 17 23 .. 693 699 .. 691 700 .. 0.89 13 ! 1.9 0.0 0.0095 1.5e+02 17 23 .. 723 729 .. 720 730 .. 0.90 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.012 CagY_M 17 eCLkgLs 23 +CL+gL+ T051670_1 227 ACLDGLT 233 8*****9 PP == domain 2 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 16 keCLkgLs 23 ++CL+gL+ T051670_1 238 RACLDGLT 245 68999998 PP == domain 3 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 267 ACLDGLS 273 8*****9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.0095 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 297 ACLDGLS 303 8*****9 PP == domain 5 score: 3.0 bits; conditional E-value: 0.0044 CagY_M 15 r 15 r T051670_1 321 R 321 1 PP == domain 6 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 533 ACLDGLS 539 8*****9 PP == domain 7 score: 1.8 bits; conditional E-value: 0.01 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 547 ACLDGLS 553 8*****9 PP == domain 8 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 561 ACLDGLS 567 8*****9 PP == domain 9 score: 2.3 bits; conditional E-value: 0.0072 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 649 ACLDGLS 655 8*****9 PP == domain 10 score: 2.2 bits; conditional E-value: 0.008 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 665 ACLDGLS 671 8*****9 PP == domain 11 score: 1.8 bits; conditional E-value: 0.01 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 679 ACLDGLS 685 8*****9 PP == domain 12 score: 1.5 bits; conditional E-value: 0.013 CagY_M 17 eCLkgLs 23 +CL+gL+ T051670_1 693 ACLDGLT 699 8*****9 PP == domain 13 score: 1.9 bits; conditional E-value: 0.0095 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_1 723 ACLDGLS 729 8*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.64 # Mc/sec: 3500.05 // Query: T051670_2 [L=782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-12 45.6 3.5 12 5.5 0.0 11.4 12 CagY_M DC-EC Repeat ------ inclusion threshold ------ 4.1 7.1 71.8 1.4 8.7 10.3 9.8 8 SBP_bac_10 Protein of unknown function (DUF1559) Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 0.019 1.5e+02 17 23 .. 196 202 .. 193 203 .. 0.90 2 ? 1.5 0.0 0.025 2.1e+02 17 23 .. 212 218 .. 210 219 .. 0.89 3 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 252 258 .. 250 259 .. 0.89 4 ! 5.5 0.0 0.0015 12 11 23 .. 410 422 .. 408 423 .. 0.82 5 ! 4.1 0.0 0.004 33 15 23 .. 446 454 .. 444 455 .. 0.92 6 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 462 468 .. 460 469 .. 0.89 7 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 476 482 .. 474 483 .. 0.89 8 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 490 496 .. 488 497 .. 0.89 9 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 504 510 .. 502 511 .. 0.89 10 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 518 524 .. 516 525 .. 0.89 11 ? 1.9 0.0 0.019 1.6e+02 17 23 .. 590 596 .. 588 597 .. 0.89 12 ? 1.8 0.0 0.021 1.7e+02 17 23 .. 604 610 .. 603 611 .. 0.89 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 196 ACLDGLS 202 8*****9 PP == domain 2 score: 1.5 bits; conditional E-value: 0.025 CagY_M 17 eCLkgLs 23 +CL+gL+ T051670_2 212 ACLDGLT 218 8*****9 PP == domain 3 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 252 ACLDGLS 258 8*****9 PP == domain 4 score: 5.5 bits; conditional E-value: 0.0015 CagY_M 11 deeErkeCLkgLs 23 + + r++CL+gLs T051670_2 410 THTPRRACLDGLS 422 556699******9 PP == domain 5 score: 4.1 bits; conditional E-value: 0.004 CagY_M 15 rkeCLkgLs 23 r++CL+gLs T051670_2 446 RRACLDGLS 454 89******9 PP == domain 6 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 462 ACLDGLS 468 8*****9 PP == domain 7 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 476 ACLDGLS 482 8*****9 PP == domain 8 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 490 ACLDGLS 496 8*****9 PP == domain 9 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 504 ACLDGLS 510 8*****9 PP == domain 10 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 518 ACLDGLS 524 8*****9 PP == domain 11 score: 1.9 bits; conditional E-value: 0.019 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 590 ACLDGLS 596 8*****9 PP == domain 12 score: 1.8 bits; conditional E-value: 0.021 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_2 604 ACLDGLS 610 8*****9 PP >> SBP_bac_10 Protein of unknown function (DUF1559) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.6 0.00029 2.4 150 195 .. 183 242 .. 151 250 .. 0.64 2 ? 3.7 17.6 0.0055 45 123 255 .. 210 341 .. 205 352 .. 0.77 3 ? -1.5 0.3 0.21 1.7e+03 24 51 .. 365 403 .. 348 413 .. 0.72 4 ? 3.3 1.4 0.0074 61 164 174 .. 415 425 .. 365 460 .. 0.58 5 ? 2.2 0.1 0.016 1.3e+02 164 173 .. 447 456 .. 435 474 .. 0.65 6 ? 1.5 0.1 0.026 2.1e+02 164 173 .. 489 498 .. 471 502 .. 0.58 7 ? 8.7 10.3 0.00017 1.4 164 252 .. 517 600 .. 500 602 .. 0.90 8 ? 0.6 13.1 0.049 4e+02 164 255 .. 589 707 .. 585 715 .. 0.81 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.00029 SBP_bac_10 150 stdGmfgdns..............kirfrdilDGlSnTilvgEkaldlskssktgtdgea 195 s dG+ +++ + r++lDGl++T E ++++++++++++++ T051670_2 183 SLDGLSHTHTpgracldglshthtHTPGRACLDGLTHTHTRREEHAWMGSHTRREEHAWM 242 444444444444444444444444888899999999999999999999999888765544 PP == domain 2 score: 3.7 bits; conditional E-value: 0.0055 SBP_bac_10 123 etnvrkslaaaggsggtrsvteadspsstdGmfgdnskirfrdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattklswalkgvett 221 +++ ++l+++++ ++++ ++++ +++ +g + + r++lDGlS+T E +++++++ t +g+ pg++ + + ++ w ++ ++t T051670_2 210 GRACLDGLTHTHTRREEHAWMGSHTRREEHAWMGSHTHMPGRACLDGLSHTHTRREEHAWMGSHTHTH-AGKSMPGWALTHTHTRREEHAWMGSHTHTC 307 5566677888999999999999999999***99*****************************996664.444444444444444444447777766666 PP SBP_bac_10 222 estnaeraagslaerngdnaadvrgfsSaHaggv 255 +++a + + + + ++++ +a++ + Hag + T051670_2 308 REEHAWMGSHTHTDTRREEHAWMGSHTHTHAGKS 341 6666666666677777788888888888898865 PP == domain 3 score: -1.5 bits; conditional E-value: 0.21 SBP_bac_10 24 hnYesafkklPagalnsgasdvrrdge...........l 51 h++ +a k++P +al ++ + + +g+ T051670_2 365 HMHTHAGKSMPGWALTHTHAGKSMPGWalththagksmP 403 778888888888888888877777665555554444444 PP == domain 4 score: 3.3 bits; conditional E-value: 0.0074 SBP_bac_10 164 rdilDGlSnTi 174 r++lDGlS+T T051670_2 415 RACLDGLSHTH 425 45555555543 PP == domain 5 score: 2.2 bits; conditional E-value: 0.016 SBP_bac_10 164 rdilDGlSnT 173 r++lDGlS+T T051670_2 447 RACLDGLSHT 456 5666666666 PP == domain 6 score: 1.5 bits; conditional E-value: 0.026 SBP_bac_10 164 rdilDGlSnT 173 r++lDGlS+T T051670_2 489 RACLDGLSHT 498 4555555555 PP == domain 7 score: 8.7 bits; conditional E-value: 0.00017 SBP_bac_10 164 rdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattklswalkgvettestnaeraagslaerngdnaadvrgfsSaHa 252 r++lDGlS+T E +++++++ t ++ + +++ s ++t+ + a++g +t ++++++ + gs ++++ + +a ++g+s H+ T051670_2 517 RACLDGLSHTHTRREEHAWMGSHTHT-----HWEEHAWMGSHTHTRREEHAWMGSHTHTHWEEHGWMGSHTHTHTPGRACLDGLSHTHT 600 79*******************99666.....67777777888899999************************************99997 PP == domain 8 score: 0.6 bits; conditional E-value: 0.049 SBP_bac_10 164 rdilDGlSnTilvgEkaldlskssktgtdgeaapgavaeaslgattkl.............................swalkgvettestnaeraagsl 233 r++lDGlS+T +g ld + ++t +g+ pg++ ++ a++++ + a++g +t ++++++ + gs T051670_2 589 RACLDGLSHTHTLGRACLDGLSRTRTH-AGKSMPGWAL-MHTHAGKSMpgwalththtrreehawmgshthtdtrreEHAWMGSHTHTHWEEHAWMGSH 685 78************9888888665443.3333333333.33333333368999999999*****************9999******************* PP SBP_bac_10 234 aerngdnaadvrgfsSaHaggv 255 ++++++ +a++ + H+g + T051670_2 686 THTRREEHAWMGSHTHTHTGKS 707 ******************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.57 # Mc/sec: 3857.19 // Query: T051670_3 [L=782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-07 30.3 7.0 61 3.2 0.0 9.4 10 CagY_M DC-EC Repeat Domain annotation for each model (and alignments): >> CagY_M DC-EC Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 281 287 .. 279 288 .. 0.89 2 ! 2.0 0.0 0.0091 1.5e+02 17 23 .. 341 347 .. 339 349 .. 0.89 3 ! 2.1 0.0 0.0081 1.3e+02 17 23 .. 357 363 .. 350 364 .. 0.88 4 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 373 379 .. 371 380 .. 0.89 5 ? 1.8 0.0 0.01 1.7e+02 17 23 .. 387 393 .. 386 394 .. 0.88 6 ! 3.2 0.0 0.0037 61 17 24 .. 401 408 .. 400 409 .. 0.89 7 ? 1.5 0.0 0.013 2.1e+02 17 23 .. 431 437 .. 428 438 .. 0.91 8 ? 1.5 0.1 0.013 2.2e+02 17 23 .. 619 625 .. 616 626 .. 0.91 9 ! 1.9 0.0 0.0096 1.6e+02 17 23 .. 633 639 .. 631 640 .. 0.89 10 ! 1.9 0.0 0.0095 1.5e+02 17 23 .. 707 713 .. 704 714 .. 0.90 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 281 ACLDGLS 287 8*****9 PP == domain 2 score: 2.0 bits; conditional E-value: 0.0091 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 341 ACLDGLS 347 8*****9 PP == domain 3 score: 2.1 bits; conditional E-value: 0.0081 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 357 ACLDGLS 363 8*****9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 373 ACLDGLS 379 8*****9 PP == domain 5 score: 1.8 bits; conditional E-value: 0.01 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 387 ACLDGLS 393 8*****9 PP == domain 6 score: 3.2 bits; conditional E-value: 0.0037 CagY_M 17 eCLkgLsd 24 +CL+gLs+ T051670_3 401 ACLDGLSQ 408 8******7 PP == domain 7 score: 1.5 bits; conditional E-value: 0.013 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 431 ACLDGLS 437 7*****9 PP == domain 8 score: 1.5 bits; conditional E-value: 0.013 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 619 ACLDGLS 625 8*****9 PP == domain 9 score: 1.9 bits; conditional E-value: 0.0096 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 633 ACLDGLS 639 8*****9 PP == domain 10 score: 1.9 bits; conditional E-value: 0.0095 CagY_M 17 eCLkgLs 23 +CL+gLs T051670_3 707 ACLDGLS 713 8*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 3857.19 // Query: T351119_1 [L=1968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.2 0.1 0.082 12.6 0.1 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 5e-06 0.082 15 43 .. 1051 1083 .. 1047 1090 .. 0.80 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351119_1 1051 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 1083 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.79 # Mc/sec: 7126.73 // Query: T351119_2 [L=1968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-21 74.1 7.5 1.6e-20 72.6 4.6 2.6 2 Transposase_1 Transposase (partial DDE domain) 0.003 17.2 0.4 0.0053 16.4 0.4 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.059 13.5 0.0 0.13 12.3 0.0 1.6 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.059 3.2e+02 25 38 .. 861 874 .. 857 876 .. 0.80 2 ! 72.6 4.6 2.9e-24 1.6e-20 14 79 .. 1046 1115 .. 1025 1116 .. 0.86 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.059 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351119_2 861 EKLSKNAMLTIVWS 874 45569********8 PP == domain 2 score: 72.6 bits; conditional E-value: 2.9e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351119_2 1046 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 1115 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 9.7e-07 0.0053 55 143 .. 1086 1179 .. 1020 1181 .. 0.75 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9.7e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351119_2 1086 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1179 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 2.5e-05 0.13 5 23 .. 1893 1911 .. 1890 1917 .. 0.86 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.5e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351119_2 1893 NLVCQVFPREYLANHNCGR 1911 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.76 # Mc/sec: 7408.04 // Query: T351119_3 [L=1968] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1968 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 8661.71 // Query: T337138_1 [L=2847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.65 # Mc/sec: 12530.44 // Query: T337138_2 [L=2846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.71 # Mc/sec: 11467.50 // Query: T337138_3 [L=2846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.66 # Mc/sec: 12336.25 // Query: T018773_1 [L=7680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.36s 00:00:02.27 Elapsed: 00:00:00.71 # Mc/sec: 30945.32 // Query: T018773_2 [L=7679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-59 201.4 37.8 1.6e-35 122.6 14.1 3.2 3 CCDC144C CCDC144C protein coiled-coil region 4.2e-07 30.2 8.4 4.2e-07 30.2 8.4 4.0 4 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 1.4 8.8 13.2 0.026 14.4 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 96.9 15.7 2e-31 1.1e-27 3 96 .. 1849 1942 .. 1849 1943 .. 0.98 2 ! 122.6 14.1 2.9e-39 1.6e-35 184 304 .. 2027 2138 .. 2016 2139 .. 0.96 3 ? -6.6 12.5 3 1.6e+04 130 203 .. 2195 2271 .. 2167 2285 .. 0.47 Alignments for each domain: == domain 1 score: 96.9 bits; conditional E-value: 2e-31 CCDC144C 3 mLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 +L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +tkt+++y+++L++Lkaent+lns+L ke ++ +rle+e+es T018773_2 1849 ILKTDIAILRQEICTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESNKRLEAEIESS 1942 599*****************************************************************************************95 PP == domain 2 score: 122.6 bits; conditional E-value: 2.9e-39 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ l+lee+nk T018773_2 2027 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDLMLEEKNK 2115 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhlkerlyqyekekaer 304 +L+nec+hlke+l+qye+ekaer T018773_2 2116 KLMNECDHLKESLFQYEREKAER 2138 **********************9 PP == domain 3 score: -6.6 bits; conditional E-value: 3 CCDC144C 130 rlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyq 203 ++ +++ nl +++++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ T018773_2 2195 AEKEAVSSKCVNLAKEIQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAM 2271 44444444444444444444444322223444444444444444443333333444444444444444444444333 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.8 5.9 3 1.6e+04 29 94 .. 1868 1932 .. 1853 1938 .. 0.78 2 ? 0.2 0.6 0.16 9e+02 44 108 .. 2114 2182 .. 2101 2183 .. 0.75 3 ? -4.0 10.4 3 1.6e+04 8 65 .. 2211 2266 .. 2207 2279 .. 0.77 4 ! 30.2 8.4 7.6e-11 4.2e-07 5 107 .. 2232 2336 .. 2230 2338 .. 0.77 Alignments for each domain: == domain 1 score: -5.8 bits; conditional E-value: 3 DUF3496 29 eLekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvlesPcvgnln 94 +Lek + yl+ +k+ k + l+k + +e+ tk +q+ s l++ +tr e+ ++ n T018773_2 1868 NLEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITKTAFRYQQELSDLKAENTRLNSELLKEEESN 1932 4666.4569999999999999999999999999999999999999999999998877766555555 PP == domain 2 score: 0.2 bits; conditional E-value: 0.16 DUF3496 44 rksLsnklnktnerLaevs....tkllvekeqnrsllstlttrpvlesPcvgnlnnslvlnrklipren 108 +k L n+ ++ +e L + + ++ v ++ ++ + +l+ +lesP g + + l++ +p+++ T018773_2 2114 NKKLMNECDHLKESLFQYErekaERVVVVRQLQQEAADSLKKLTMLESPLEGISHYHINLDETQVPKKK 2182 45666777777777754431111567888888899999999999********99999999999999986 PP == domain 3 score: -4.0 bits; conditional E-value: 3 DUF3496 8 ikdLeselskmKtsqedsnkteLekykqlylee.lkvrksLsnklnktnerLaevstkl 65 i+ + el mK +q+++ +Le+ k++ ee l++++ ++n + + ++L+e +++l T018773_2 2211 IQVFQQELLSMKKVQQEC--EKLEEDKKMLEEEiLNLKTHMEN-SMVELSKLQEYKSEL 2266 666789***********9..89******999984466666655.445566777777776 PP == domain 4 score: 30.2 bits; conditional E-value: 7.6e-11 DUF3496 5 ElrikdLeselskmKtsqedsnkteLekykqlyleelkvrks.LsnklnktnerLa....evstkllvekeqnrsllstlttrpvlesPcvgnlnnsl 97 E k Le e+ +Kt e+s eL k + y el r + +kl++ + +++ + + +l++ekeq +++lstl+tr esPcv+nl+ s+ T018773_2 2232 EEDKKMLEEEILNLKTHMENS-MVELSKLQ-EYKSELDERAMqAVEKLEEIHLQIE*ensNDQYQLFMEKEQVKYFLSTLPTRRGRESPCVENLT-SI 2326 556788999999999988777.89998874.57777766655134566666666644322345689*****************************.** PP DUF3496 98 vlnrklipre 107 +lnrk+ip++ T018773_2 2327 GLNRKYIPQM 2336 ********86 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 1.1 4.8e-06 0.026 24 94 .. 2029 2098 .. 2025 2099 .. 0.95 2 ? -1.6 5.1 0.43 2.3e+03 13 79 .. 2216 2281 .. 2183 2285 .. 0.80 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.8e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018773_2 2029 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 2098 68999********************************************************76.9999986 PP == domain 2 score: -1.6 bits; conditional E-value: 0.43 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Laminin_II 13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 +e l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ T018773_2 2216 QELL-SMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIH 2281 3333.45678999999999999999999999999999999999999999999999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 715 (0.0438489); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 2.10u 0.40s 00:00:02.50 Elapsed: 00:00:00.68 # Mc/sec: 32306.34 // Query: T018773_3 [L=7679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-16 60.4 9.6 2.5e-16 59.6 9.6 1.3 1 CCDC144C CCDC144C protein coiled-coil region 1e-08 34.9 0.3 1.8e-08 34.0 0.3 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 9.6 3e-20 2.5e-16 96 185 .. 1941 2028 .. 1928 2030 .. 0.93 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 3e-20 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlkdknellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ d+ne+l++qLsk++ k+n+L++++++ rd+Lr+k+l+lE++q T018773_3 1941 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKISSDISEVEDTNEFLTEQLSKTQIKFNTLKDKFRKKRDTLRKKSLALETLQ 2028 689**********************9554.57..89*****************************************************99 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.3 2.2e-12 1.8e-08 185 228 .. 3173 3216 .. 3158 3222 .. 0.93 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2.2e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018773_3 3173 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 3216 679**************************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.61u 0.39s 00:00:02.00 Elapsed: 00:00:00.64 # Mc/sec: 34325.49 // Query: T035017_1 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.47 # Mc/sec: 2988.65 // Query: T035017_2 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00051 20.5 1.1 13 6.4 0.0 3.6 3 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.7 0.0 0.0014 23 11 39 .. 219 247 .. 210 249 .. 0.87 2 ! 4.7 0.0 0.0029 47 12 34 .. 254 276 .. 249 281 .. 0.87 3 ! 6.4 0.0 0.00081 13 11 35 .. 336 360 .. 334 361 .. 0.87 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0014 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAlll 39 g ++Aa++l+ + +++ssP+aa l + T035017_2 219 GSSPQAAPVLRGFQSSGGSSPQAAPVLRG 247 45789*****************9977766 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0029 TPR_16 12 dyddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ a T035017_2 254 SSPQAAPVLRELQSSGGSSPQGA 276 5789****************987 PP == domain 3 score: 6.4 bits; conditional E-value: 0.00081 TPR_16 11 gdyddAaaaleaalkrdpssPdaad 35 g ++ a++l+++l +++ssP+aa T035017_2 336 GSSPQGAPVLRRLLSSGGSSPQAAP 360 556899****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2926.39 // Query: T035017_3 [L=490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0079 16.7 1.0 4.2 8.0 0.1 3.3 4 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.1 0.00026 4.2 11 37 .. 213 239 .. 211 242 .. 0.85 2 ! 5.4 0.0 0.0017 28 13 34 .. 232 253 .. 230 263 .. 0.86 3 ! 4.7 0.0 0.0028 46 14 37 .. 267 290 .. 259 293 .. 0.87 4 ? -2.8 0.0 0.61 1e+04 13 23 .. 326 336 .. 323 344 .. 0.77 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00026 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAl 37 g ++Aa++l+++ +++ssP+aa l T035017_3 213 GSSPQAAPVLRRLQSSGGSSPQAAPVL 239 5678******************98665 PP == domain 2 score: 5.4 bits; conditional E-value: 0.0017 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ + T035017_3 232 SPQAAPVLRRLQSSGGSSPQGV 253 689****************976 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0028 TPR_16 14 ddAaaaleaalkrdpssPdaadAl 37 ++Aa++l+ + +++ssP+aa l T035017_3 267 PQAAPVLRGLQSSGGSSPQAAPVL 290 79*****************98655 PP == domain 4 score: -2.8 bits; conditional E-value: 0.61 TPR_16 13 yddAaaaleaa 23 ++Aa++l+aa T035017_3 326 SPQAAPVLRAA 336 56788888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.49 # Mc/sec: 2860.83 // Query: T060424_1 [L=1952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2061 (0.126395); expected 326.1 (0.02) Passed bias filter: 535 (0.03281); expected 326.1 (0.02) Passed Vit filter: 372 (0.0228137); expected 16.3 (0.001) Passed Fwd filter: 86 (0.00527413); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.41u 0.48s 00:00:02.89 Elapsed: 00:00:00.72 # Mc/sec: 7756.03 // Query: T060424_2 [L=1952] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1952 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1841 (0.112903); expected 326.1 (0.02) Passed bias filter: 516 (0.0316448); expected 326.1 (0.02) Passed Vit filter: 356 (0.0218325); expected 16.3 (0.001) Passed Fwd filter: 97 (0.00594873); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.47s 00:00:03.30 Elapsed: 00:00:00.80 # Mc/sec: 6980.43 // Query: T060424_3 [L=1951] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1951 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1637 (0.100392); expected 326.1 (0.02) Passed bias filter: 436 (0.0267386); expected 326.1 (0.02) Passed Vit filter: 270 (0.0165583); expected 16.3 (0.001) Passed Fwd filter: 67 (0.00410892); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.23u 0.38s 00:00:02.61 Elapsed: 00:00:00.71 # Mc/sec: 7861.24 // Query: T369909_1 [L=3494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.56 # Mc/sec: 17536.39 // Query: T369909_2 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.57 # Mc/sec: 17229.10 // Query: T369909_3 [L=3493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.54 # Mc/sec: 18505.33 // Query: T156242_1 [L=1241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6827.48 // Query: T156242_2 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 6955.74 // Query: T156242_3 [L=1240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 6955.74 // Query: T001132_1 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 8665.01 // Query: T001132_2 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.52 # Mc/sec: 8665.01 // Query: T001132_3 [L=1575] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.6 2.8 2 8.7 2.8 1.4 1 Mit_proteolip Mitochondrial proteolipid Domain annotation for each model (and alignments): >> Mit_proteolip Mitochondrial proteolipid # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 2.8 0.00012 2 16 51 .. 1378 1413 .. 1378 1421 .. 0.70 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00012 Mit_proteolip 16 yYtqvYqeIwvemglmgfivykirsADkaskaLkas 51 +Y+++Y++I++++ + f + +r Lk s T001132_3 1378 FYIYIYIYIYIYIFFFFFFFFFLRQSLALLPRLKCS 1413 79*********9988888777666655555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1575 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 8501.52 // Query: T266278_1 [L=4694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-20 71.0 0.2 1.6e-19 70.2 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.2 0.2 9.7e-24 1.6e-19 54 193 .. 2070 2219 .. 2061 2242 .. 0.91 Alignments for each domain: == domain 1 score: 70.2 bits; conditional E-value: 9.7e-24 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS RVT_1 54 aveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnell 151 ++++++ ++k+++ +++++++D +kaF +++ ++ l++l++++++ + + +i++++ +++ ++ +ng++ e ++ k+g++q ++lS llfn++++ T266278_1 2070 QINKCNPSIKQTNDKNHMITIDAEKAFKRIQQHFMLKTLNKLGIDGMYLIIIRTIYDKPTDNIILNGQKLEAFPLKTGTRQECPLSSLLFNIVLEVPA 2167 458888999999********************************************************99**************************99 PP TT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 152 relrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 r + ++ ++ tl+++aDD++++ ++ ++q++ + ++++ k+ T266278_1 2168 RAIWQEKaikgiqlgkEEATLSLFADDMIVYLENpIVSAQNHHKLISNFSKS 2219 99988878**************************666699999999999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.61 # Mc/sec: 22014.32 // Query: T266278_2 [L=4694] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4694 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.57 # Mc/sec: 23152.99 // Query: T266278_3 [L=4693] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-95 317.5 20.5 3.8e-92 308.8 10.8 2.2 2 Transposase_22 L1 transposable element 5.5e-06 25.7 2.1 1.3e-05 24.5 2.1 1.7 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 2.1 1.9e-06 0.016 35 121 .. 1162 1240 .. 1157 1244 .. 0.78 2 ! 308.8 10.8 4.7e-96 3.8e-92 146 368 .] 1247 1471 .. 1246 1471 .. 0.97 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.9e-06 .XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXX CS Transposase_22 35 eeldpdlkdflelriedik...kdfykelkelieskakele.alkekeentekqlkiikekqentskqvmemnkellelktkvdelkkeqs 121 e++++++d ++l + +++ k +++elke + ++ ke + +k ++e + v + k+l+elkt +el +++ T266278_3 1162 MEQSWMKNDIDQLTEIGFRr*vKTNFSELKEHVLTHLKEAKsLEKRLDEWLTRINS------------VEKNLKDLMELKTMERELCNTCT 1240 49****************95555*****************9888999985544333............22234678888888888877775 PP == domain 2 score: 308.8 bits; conditional E-value: 4.7e-96 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEE.EE CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqei.yr 236 +++eer+s +ed+++ei++e k ekr+k+ eq lq+ d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iq i + T266278_3 1247 NQVEERISVIEDQMNEINQEDKCGEKRVKRTEQGLQE-I*DYVKRPNLCLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIQKI*K- 1337 699*********************************8.6779**********************************************8666. PP ESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH..HHHHHHHHHHTT---EEETTTEEEEESSSS CS Transposase_22 237 tPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre..wtdviqilkekkfqPrllyPaklsiiidGe 327 tP+r++ +ra++rhii+r tkv++k+k+l+a+rek +vt kGkPirltadl aetl+a re t ++ilkek+fqPr++y akls+i++Ge T266278_3 1338 TPQRYSLRRATPRHIIIRCTKVEMKEKMLRAAREKDQVTHKGKPIRLTADLLAETLQAGRE*gLT--FNILKEKNFQPRISYTAKLSFISEGE 1428 9***********************************************************88565..9************************* PP EEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 328 ikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 ik f d ++lrd+++trPal++llke ++er++ryq+l++++ T266278_3 1429 IKSFTDNKMLRDFVTTRPALQELLKEvlNMERNNRYQPLQKHA 1471 ****************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 2.1 1.7e-09 1.3e-05 4 19 .] 2730 2745 .. 2730 2745 .. 0.98 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 1.7e-09 DUF1725 4 gKWMELEnIILSEisQ 19 g+WM+LE+IILS+isQ T266278_3 2730 GTWMKLETIILSKISQ 2745 9**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4693 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.61 # Mc/sec: 22009.63 // Query: T024390_1 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-33 113.3 3.7 7e-33 112.4 3.7 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of 1.7e-13 50.7 0.0 2.8e-13 50.0 0.0 1.3 1 rve Integrase core domain 5.4e-10 39.3 3.6 9.3e-10 38.5 3.6 1.2 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.16 10.3 0.2 0.23 9.8 0.2 1.1 1 DcuC C4-dicarboxylate anaerobic carrier Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.4 3.7 1.7e-36 7e-33 1 78 [. 181 258 .. 181 266 .. 0.95 Alignments for each domain: == domain 1 score: 112.4 bits; conditional E-value: 1.7e-36 HERV-K_REC 1 nraplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnase 78 nra t ++nkmv seeqmklpstk ae ptwaqlkkltqla k l+ t+vtqtpe mlla lmivs v n+s+ T024390_1 181 NRASSTRQVNKMVISEEQMKLPSTKEAELPTWAQLKKLTQLAEKSLKKTRVTQTPENMLLAVLMIVSTVLQCHWNTSD 258 8********************************************************************998888776 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.0 0.0 6.8e-17 2.8e-13 64 118 .. 8 60 .. 2 61 .. 0.93 Alignments for each domain: == domain 1 score: 50.0 bits; conditional E-value: 6.8e-17 rve 64 gvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkde 118 pe++ +Dng+ y+s++f++fl++++i++++ p+++q ++++Er+ rtlk++ T024390_1 8 I--PEKIKTDNGPGYCSRTFQKFLNQWKITHTTGIPYNSQGQAIIERTSRTLKAQ 60 3..9*************************************************86 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.5 3.6 2.3e-13 9.3e-10 63 173 .. 249 355 .. 236 362 .. 0.82 Alignments for each domain: == domain 1 score: 38.5 bits; conditional E-value: 2.3e-13 HHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHC CS GP41 63 klrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgv 161 l+Ch n C+T+ yn+se W+ ++ hl+g + ++ ld+skl+++i ++++++ + ++ + + k l n ++ Wv+ ik ++ i+ v T024390_1 249 VLQCHWNTSDFCITPQAYNESEhHWDMIRCHLQG--REGNLTLDISKLKEQIFEASKAHLNLVPGTEAIVKATDGLTNLNPI-TWVKTIKSST--IVHCV 343 689******************************9..68899***********************999999999888876665.8***987653..33444 PP HHHHHHHHHHHX CS GP41 162 alrvvlivllll 173 ++v l +lll+ T024390_1 344 LILVCLFCLLLV 355 445555555554 PP >> DcuC C4-dicarboxylate anaerobic carrier # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 0.2 5.5e-05 0.23 417 464 .. 306 355 .. 299 356 .. 0.82 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 5.5e-05 DcuC 417 lniisPtsgvvvatlglarvsfgtwvkfv..akllavllvvsilllivav 464 ln++ t ++v at gl ++++ twvk + ++++ ++l++++l+ +++v T024390_1 306 LNLVPGTEAIVKATDGLTNLNPITWVKTIksSTIVHCVLILVCLFCLLLV 355 566666899******************9844689999******9998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 527 (0.0323194); expected 326.1 (0.02) Passed bias filter: 263 (0.016129); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 5861.90 // Query: T024390_2 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 5861.90 // Query: T024390_3 [L=1044] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-06 26.8 1.0 4.1e-06 25.9 1.0 1.5 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 1.0 2.5e-10 4.1e-06 7 48 .. 119 159 .. 115 161 .. 0.90 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 2.5e-10 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +++++grG +cv P +++ ++w+P R ++ T024390_3 119 WKDNKNKTWEI-GKMITWGRGFACVSPGENQLPVWIPTRHLK 159 99999999983.69*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1044 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5973.41 // Query: T089647_1 [L=2739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1063 (0.0651907); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.30s 00:00:01.55 Elapsed: 00:00:00.59 # Mc/sec: 13281.04 // Query: T089647_2 [L=2739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2739 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1236 (0.0758003); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.37s 00:00:01.67 Elapsed: 00:00:00.61 # Mc/sec: 12845.60 // Query: T089647_3 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.025 13.7 12.7 0.043 12.9 12.7 1.3 1 CitMHS Citrate transporter Domain annotation for each model (and alignments): >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 12.7 2.6e-06 0.043 77 175 .. 340 444 .. 326 506 .. 0.56 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2.6e-06 xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 77 llvlltallsafvsndgd...vlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttr......glslpnllllalllvgllplvllfm 164 +++++ ++ a++++++ ++i+i i++++ ++ ++++ li+ ++++ + ++t+i + +l+++ +++++++++ ++++ ++++ T089647_3 340 IFFIIIIFF-AIITFVTInirFIITIVITITIII-ITITSTIiitILIITIMISITIITITIITI---IitiiitILTITTIIIIIITII-IITITIILT 433 222222222.333333335667777777777777.577777744422222222222222222222...2223444555555555555555.444444444 PP xxxxxxxxxxx RF CitMHS 165 fgvalalpvna 175 +++ l +++n+ T089647_3 434 ITIILTIAINH 444 45555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1429 (0.0876365); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 121 (0.00742058); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.55u 0.32s 00:00:01.87 Elapsed: 00:00:00.60 # Mc/sec: 13054.92 // Query: T336951_1 [L=1428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 8170.53 // Query: T336951_2 [L=1427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 8164.81 // Query: T336951_3 [L=1427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 8331.44 // Query: T272760_1 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3689.28 // Query: T272760_2 [L=619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.001 18.5 1.2 0.0049 16.4 0.1 2.5 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.1 0.079 1.3e+03 11 21 .] 209 219 .. 208 219 .. 0.87 2 ! 16.4 0.1 3e-07 0.0049 4 20 .. 308 324 .. 308 325 .. 0.91 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.079 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272760_2 209 WRGFVLTRSFR 219 9***9988886 PP == domain 2 score: 16.4 bits; conditional E-value: 3e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272760_2 308 VTVMQAHVRGWLERKRL 324 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 584 (0.035815); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 3541.71 // Query: T272760_3 [L=618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 3535.99 // Query: T208745_1 [L=2353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 12945.26 // Query: T208745_2 [L=2353] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2353 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.52 # Mc/sec: 12945.26 // Query: T208745_3 [L=2352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 12939.75 // Query: T122620_1 [L=720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 818 (0.0501656); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.53 # Mc/sec: 3886.41 // Query: T122620_2 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 566 (0.0347111); expected 326.1 (0.02) Passed bias filter: 27 (0.00165583); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4197.83 // Query: T122620_3 [L=719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 695 (0.0426223); expected 326.1 (0.02) Passed bias filter: 41 (0.00251441); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 3486.33 // Query: T027892_1 [L=1356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.65 # Mc/sec: 5968.13 // Query: T027892_2 [L=1355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 605 (0.0371029); expected 326.1 (0.02) Passed bias filter: 344 (0.0210965); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 5537.75 // Query: T027892_3 [L=1355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 455 (0.0279038); expected 326.1 (0.02) Passed bias filter: 294 (0.0180302); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.74 # Mc/sec: 5238.41 // Query: T303738_1 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.59 # Mc/sec: 7350.88 // Query: T303738_2 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.77 # Mc/sec: 5632.49 // Query: T303738_3 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.60 # Mc/sec: 7228.36 // Query: T272207_1 [L=1944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-05 25.1 0.5 2.2e-05 24.3 0.5 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.5 1.3e-09 2.2e-05 23 86 .. 1212 1275 .. 1203 1276 .. 0.68 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 1.3e-09 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyg 86 t++++pptw q+kkl+q+ l t +++a ++++++ ++ + ++ + y+ T272207_1 1212 NTRRTQPPTWGQIKKLSQMVEENLRKVGQPVTMSNLMIAVIVVITIATSIPSAKADTENNSIYW 1275 6999****************99887555444555555555555555555554444444555566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.57 # Mc/sec: 9588.71 // Query: T272207_2 [L=1944] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-10 38.5 0.2 1.4e-09 37.8 0.2 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.8 0.2 8.7e-14 1.4e-09 123 165 .. 1331 1373 .. 1307 1377 .. 0.90 Alignments for each domain: == domain 1 score: 37.8 bits; conditional E-value: 8.7e-14 HERV-K_env_2 123 ntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 + +vlvwe+c+a+ a +l n+ +g iidw+p+g f nc+ q+ T272207_2 1331 KMNVLVWEDCIAEQAEVLCNDSYGIIIDWSPKGMFGLNCTSQS 1373 568*************************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1944 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 8178.61 // Query: T272207_3 [L=1943] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-17 62.5 0.5 6e-17 61.6 0.1 1.7 2 RVP Retroviral aspartyl protease 7.5e-14 51.4 0.0 1.4e-13 50.5 0.0 1.4 1 dUTPase dUTPase 9e-10 38.2 0.8 1.9e-09 37.2 0.8 1.5 1 G-patch G-patch domain 1.2e-07 30.8 1.3 2.2e-07 29.9 1.3 1.4 1 IN_DBD_C Integrase DNA binding domain 0.008 15.9 0.0 0.014 15.2 0.0 1.3 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) ------ inclusion threshold ------ 0.11 12.4 0.2 0.2 11.7 0.2 1.3 1 G-patch_2 G-patch domain Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 4.4 1.2e+04 76 98 .. 853 876 .. 848 878 .. 0.68 2 ! 61.6 0.1 2.2e-20 6e-17 9 100 .. 956 1046 .. 956 1047 .. 0.98 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 4.4 EEEESTT.SSSEEE-HHHHCCCT- CS RVP 76 splilpe.lpvnllGrdlLqklgv 98 s +lpe ++ llGr+ L+ gv T272207_3 853 SRQMLPEgMIGLLLGRSSLNLKGV 876 5567888455559***99976555 PP == domain 2 score: 61.6 bits; conditional E-value: 2.2e-20 EEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 9 vkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 + i+gk++++l+ tG d+++i +++P wp++ ++ ++ G+++a e++qs++i+++ + + + ++++p +++ +p+nl+Grdl q++g+++ T272207_3 956 ITIQGKKFKGLVNTGVDISIIYLQHWPSLWPIQPTQFNVVGVSKAPEVYQSSYILHCEGPDGQPRTIQPTVTS-VPLNLWGRDLSQQWGAQI 1046 679**********************************************************************.***************997 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 0.0 5.1e-17 1.4e-13 41 106 .. 856 919 .. 849 926 .. 0.89 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 5.1e-17 E--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC CS dUTPase 41 klpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt 106 +lp+g+ +l+l+RS+l++kg+ v +gvidsdy+G k+ ++ +t+ + k + g+RiAqL+++++++ T272207_3 856 MLPEGMIGLLLGRSSLNLKGVQVQTGVIDSDYNG--KIQIVISTSVPWKAEPGERIAQLLIVPYVE 919 57999*****************************..5555568999****************9987 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.2 0.8 6.9e-13 1.9e-09 7 44 .. 1059 1096 .. 1054 1097 .. 0.95 Alignments for each domain: == domain 1 score: 37.2 bits; conditional E-value: 6.9e-13 G-patch 7 kmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 m+ mG+ +G+GLGk+ qG +eP+++ ++ GlG+ T272207_3 1059 HMMPEMGYVPGTGLGKNFQGLKEPLQVGRQSSHQGLGY 1096 6************************************8 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.9 1.3 8e-11 2.2e-07 4 49 .. 1131 1175 .. 1128 1176 .. 0.91 Alignments for each domain: == domain 1 score: 29.9 bits; conditional E-value: 8e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+d +++W +++++grG++cv P ++++++w+P R +++ T272207_3 1131 LVWWRDPITKSWEI-GNIITWGRGYACVSPGQNQQLIWIPSRHLKP 1175 689*********84.69*************************9996 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 5e-06 0.014 1 36 [. 823 860 .. 823 886 .. 0.84 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 5e-06 Gag_p24 1 lktLkalkkaveqygpsspeviqlidala..eqalpkd 36 +k Lk++k+a++qygp+sp+v+ l++++a q+lp+ T272207_3 823 FKVLKDFKQAINQYGPGSPFVMGLLKNVAvsRQMLPEG 860 699**********************9865216778765 PP >> G-patch_2 G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.2 7.2e-05 0.2 21 57 .. 1060 1096 .. 1057 1097 .. 0.91 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7.2e-05 G-patch_2 21 lLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGa 57 ++ MG+ +g+g gkn +g ++p ++ r+ GLG T272207_3 1060 MMPEMGYVPGTGLGKNFQGLKEPLQVGRQSSHQGLGY 1096 7889****************99999999999*****6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1943 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 8551.68 // Query: T336900_1 [L=742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 3369.42 // Query: T336900_2 [L=742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.53 # Mc/sec: 4005.16 // Query: T336900_3 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.66 # Mc/sec: 3211.93 // Query: T106654_1 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.54 # Mc/sec: 6844.80 // Query: T106654_2 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-21 76.4 2.8 2e-21 76.4 2.8 3.5 4 ADAM_CR ADAM cysteine-rich 2.5e-16 60.1 26.2 2.5e-16 60.1 26.2 3.3 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -12.2 10.1 2 1.6e+04 15 15 .. 885 885 .. 856 914 .. 0.62 2 ! 76.4 2.8 2.4e-25 2e-21 1 109 [. 939 1055 .. 939 1059 .. 0.86 3 ? 1.5 2.9 0.043 3.5e+02 1 20 [. 1063 1083 .. 1063 1089 .. 0.89 4 ? -5.1 4.9 2 1.6e+04 4 27 .. 1087 1110 .. 1085 1116 .. 0.60 Alignments for each domain: == domain 1 score: -12.2 bits; conditional E-value: 2 ADAM_CR 15 C 15 C T106654_2 885 C 885 2 PP == domain 2 score: 76.4 bits; conditional E-value: 2.4e-25 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatvi 90 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ T106654_2 939 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNIL 1035 9**************************************999975.4699****98444355699********************9553455559999 PP ADAM_CR 91 qtkiknkeCvgidvh.eedv 109 ++ik+++C+g+++h ++d T106654_2 1036 VHDIKEEKCFGYEAHqGTDL 1055 999999*******9745555 PP == domain 3 score: 1.5 bits; conditional E-value: 0.043 ADAM_CR 1 dgtpCke.ayCykgkCktrde 20 dg +C +yC+k +C+++++ T106654_2 1063 DGATCGPgSYCLKHNCTSYQD 1083 899**999********99875 PP == domain 4 score: -5.1 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106654_2 1087 ECDLKTCnYKGVCNNK-KHCHCLHG 1110 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.1 26.2 3e-20 2.5e-16 2 76 .] 863 934 .. 862 934 .. 0.95 2 ? -2.5 1.4 1.1 8.7e+03 33 52 .. 943 961 .. 937 979 .. 0.51 3 ? -0.2 8.6 0.2 1.6e+03 29 71 .. 1063 1104 .. 1041 1109 .. 0.76 Alignments for each domain: == domain 1 score: 60.1 bits; conditional E-value: 3e-20 Disintegrin 2 egEeCDcGsteeckkdkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 + EeCDcGs ++c +d+CC+ ++C+l+ g+ C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106654_2 863 QREECDCGSLKDCASDRCCE-TSCTLSLGSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 934 68******************.9*****************.7************6.556***************97 PP == domain 2 score: -2.5 bits; conditional E-value: 1.1 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106654_2 943 CSAvSVCIRGNCS--DRDMQC 961 3322333333332..222222 PP == domain 3 score: -0.2 bits; conditional E-value: 0.2 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106654_2 1063 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 1104 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 402 (0.0246535); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.61 # Mc/sec: 6059.33 // Query: T106654_3 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-16 60.4 0.0 4.2e-16 59.3 0.0 1.5 1 Pep_M12B_propep Reprolysin family propeptide 4.8e-15 55.9 0.5 7.7e-15 55.2 0.5 1.3 1 Reprolysin Reprolysin (M12B) family zinc metalloproteas 0.0059 16.6 0.8 0.0097 15.9 0.8 1.2 1 Reprolysin_5 Metallo-peptidase family M12 0.0061 16.9 0.2 0.011 16.1 0.2 1.4 1 Reprolysin_3 Metallo-peptidase family M12B Reprolysin-lik ------ inclusion threshold ------ 0.14 11.7 0.0 0.22 11.0 0.0 1.2 1 Reprolysin_4 Metallo-peptidase family M12B Reprolysin-lik Domain annotation for each model (and alignments): >> Pep_M12B_propep Reprolysin family propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.3 0.0 1.3e-19 4.2e-16 3 125 .. 488 594 .. 481 612 .. 0.86 Alignments for each domain: == domain 1 score: 59.3 bits; conditional E-value: 1.3e-19 Pep_M12B_propep 3 viPvrvdeegeflshelkkkrrrRslseeeekeerlsyrlkafgkefhLnLeknsellapgftvetrredgeereespeeeehCyYqGtvrgep 96 viP++v +rR e +++lsy+++++g++++++++++++++ +++ v+t +++g +e+ p + ++CyY +++g p T106654_3 488 VIPRKVP--------------HRRGG-VE--MPDQLSYSMHFRGRRHVIHMKLKKNMMPRHLPVFTNNDQGAMQENYPFVPRDCYYDCYLEGVP 564 4444444..............23333.22..369*********************************999999999999999************ PP Pep_M12B_propep 97 gssvalstCsG.lrGvirteneeYfIePle 125 gs ++l tC G lrG++++++ +Y I+Ple T106654_3 565 GSVATLDTCRGgLRGMLQVDDLTYEIKPLE 594 *********9659****************7 PP >> Reprolysin Reprolysin (M12B) family zinc metalloprotease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.2 0.5 2.4e-18 7.7e-15 4 187 .. 654 832 .. 651 841 .. 0.86 Alignments for each domain: == domain 1 score: 55.2 bits; conditional E-value: 2.4e-18 EEEEEE-HHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEE-SS--SS---SSHHHHHHHHHHHHHHCTTTS-..SEEEEEESS.--STT CS Reprolysin 4 elfivvdkklfkkmgsdveavrqkvlevvnlvnkiykelnirvvLvglEiWsdedkievskdaeetLeeflkwkeellkkrkkhdaaqLlsgk.efekk 101 +l+ v + lf+++ ++ ++ ++v+ + ++ +i+k + ++v + l iW+d+d + + a+ ++ ef +wk +++ +hd+ ++++ + + T106654_3 654 KLHYTVTNGLFMQNP-NMSHIIENVVIINSIIHTIFKPVYLNVYVRVLCIWNDMDIVMYNMPADLVVGEFGSWKYYEWFSQIPHDTSVVFTSN*L-GN- 749 566666777776655.9999*****************************************************************9988876553.33. PP --EEE-TT-TTSTTTSEEEEE--SSSHHHHHHHHHHHHHHHCT---GHHTTS--STTS-BTTST.TTTS---C--HHHHHHHHHHC CS Reprolysin 102 tvGaayvgglCskeksggvaedkkknlealavilaqeLghnlGlthdeekeCkceekgvCiMneeagsssgvkFskcsiedfeqfl 187 + a ++g+C+++ ++ + + +l a++ a+ Lghn+Gl+hd+ +C+c ++++ +M++ + + s+cs e ++ + T106654_3 750 SECYASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHDSV-GCYCFRRTNYLMAP--VPDLNDMMSNCSYEIIQRKF 832 46899********88887777777999999*******************.9****9*******9..66667799****98766655 PP >> Reprolysin_5 Metallo-peptidase family M12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.8 3e-06 0.0097 140 186 .. 777 812 .. 748 822 .. 0.75 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 3e-06 Reprolysin_5 140 atevqvvaHElGHnfGavHDcdsssesqsCslsnstepaggryiMap 186 + v+aH lGHn+G +HD + C ++ ++ +y+Map T106654_3 777 FRGACVTAHALGHNMGLRHDSVG------C-----YCFRRTNYLMAP 812 466789**************994......4.....345699999998 PP >> Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.2 3.3e-06 0.011 81 124 .] 753 796 .. 739 796 .. 0.91 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.3e-06 Reprolysin_3 81 lAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfganHt 124 +A + ++cn++++a +++ ++ ga ++aH +GHn+g++H+ T106654_3 753 YASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHD 796 588899*******999999988888999***************7 PP >> Reprolysin_4 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 6.7e-05 0.22 138 193 .. 782 829 .. 773 836 .. 0.85 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 6.7e-05 Reprolysin_4 138 ifAHEiGHtfGaaHdlsdegeglsskteegsgqtIMsyaseasqeafapisirlia 193 + AH GH++G+ Hd + g+ ++ + +++M+++ + +++++++s ++i T106654_3 782 VTAHALGHNMGLRHD--SVGC-----YCFRRTNYLMAPVPDL-NDMMSNCSYEIIQ 829 57************9..4678.....89999*******9876.5899999999984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 5512.44 // Query: T153055_1 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 5457.93 // Query: T153055_2 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 5373.96 // Query: T153055_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.69 # Mc/sec: 5062.43 // Query: T113915_1 [L=2453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.62 # Mc/sec: 11318.74 // Query: T113915_2 [L=2453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.66 # Mc/sec: 10632.75 // Query: T113915_3 [L=2452] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2452 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.63 # Mc/sec: 11134.53 // Query: T327296_1 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-52 177.3 1.5 5.2e-52 176.4 1.5 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 1.7e-34 119.2 2.7 1.7e-20 73.1 0.8 2.4 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 176.4 1.5 6.3e-56 5.2e-52 1 222 [] 1591 1847 .. 1591 1847 .. 0.96 Alignments for each domain: == domain 1 score: 176.4 bits; conditional E-value: 6.3e-56 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kll+++q+gf pg + + ++ ++++++++ k+++++++D +kaF++++ + l T327296_1 1591 IPKPGrdtteKENFRPISLMNIDAKILNKILANRIQQHIKKLLHHDQVGFIPGMQGWFNIcksiNVIQHINRTSDKNHTIISIDAEKAFNKIQQLFML 1688 89999999999****************************************************99999999999************************ PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ T327296_1 1689 KTLNKLGTNGMYLKIVRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeiqgiqlgkEEVKLSLFADDMIVYLENpI 1786 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++q+ll+ ++++ k sg+kin +K++++l+ + s+++kyLG++l T327296_1 1787 VSAQNLLKLISNFSKVSGYKINLQKSQAFLYtnnrqtesqimsELpfttASKRIKYLGIQL 1847 77***************************99999988877775115668*********986 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.1 0.8 2.1e-24 1.7e-20 171 230 .. 858 917 .. 852 935 .. 0.87 2 ! 45.5 0.0 5.1e-16 4.1e-12 308 364 .. 995 1051 .. 992 1055 .. 0.90 Alignments for each domain: == domain 1 score: 73.1 bits; conditional E-value: 2.1e-24 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT--- CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanvi 230 +k ++eqslq+i+d+vkrP l liGv+e + e+ +klen+l++ii+enfPn+++e + T327296_1 858 EKKVKNEQSLQEIWDYVKRPTLHLIGVPEGDRENRTKLENTLQDIIQENFPNIAREPTFK 917 345679*************************************************97765 PP == domain 2 score: 45.5 bits; conditional E-value: 5.1e-16 TT---EEETTTEEEEESSS.SEEEESSHHHHHHHHTT-HHHHHHHTTT-SSXSSXXXX CS Transposase_22 308 kkfqPrllyPaklsiiidG.eikvfidktklrdylstrPalkrllkeknerkdryqal 364 k+fqPr++ Pa+ls+i+ ei+ f dk++lrd+++trPal++llke +++ + q++ T327296_1 995 KNFQPRISSPAQLSLIS-E*EIRSFTDKQMLRDFVTTRPALQELLKEALNKHGKEQPV 1051 79************986.666**************************98888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 528 (0.0323807); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 8790.92 // Query: T327296_2 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0065 16.6 0.0 0.012 15.7 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 7.2e-07 0.012 17 87 .. 1104 1231 .. 1101 1315 .. 0.75 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 7.2e-07 HHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........................EEEEEEESSSTTSSEEEEEECSEEEEE...... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF Exo_endo_phos 17 rsaaladllkaydadvlglqEvdddelsrlplla...........................dadaskfgtgkgqggvavlsrfpltsl...... 77 +++la+++k++d+ ++qE++ ++ +l+ ++ +++++g ++++ ++++ T327296_2 1104 LKDRLANWIKSQDPLMCCIQETHLTCRDTHRLKLkgwrki*qangkqkeqgfqs*slikqtL-----TKVKRDKEGHYIIVKGSMQQEeltiln 1192 589******************99999888877779999999999999999999999655440.....445555666677777777555567777 PP ..........................EEEEEE-SS...- CS ..........................xxxxxxxxx...x RF Exo_endo_phos 78 ..........................vivlGDfNa...r 87 i++GDfN+ + T327296_2 1193 iyapntgaprfikqvlrdlerdldshTIIMGDFNTplsT 1231 77777777777888888888888888********96662 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.76 # Mc/sec: 8093.14 // Query: T327296_3 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-30 105.1 9.6 2.2e-28 99.0 1.9 2.4 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.19 11.9 2.3 0.57 10.3 0.3 2.3 2 UBD Ubiquitin-binding domain Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 1.1 2.7e-05 0.22 149 174 .. 837 862 .. 832 862 .. 0.88 2 ! 99.0 1.9 2.7e-32 2.2e-28 220 320 .. 906 1008 .. 903 1010 .. 0.90 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 2.7e-05 HHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 149 eervsaaedeieeidrevkerekrkk 174 +vs +ed+++e++re k+rek kk T327296_3 837 GRKVSVIEDQMNEMKREEKFREKSKK 862 568********************987 PP == domain 2 score: 99.0 bits; conditional E-value: 2.7e-32 -HHHHHHT---EEEEEEESSSS-TSSSS..--EEEEE.ESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHHHT CS Transposase_22 220 fPnlkkeanviiqeiyrtPnrqdskras..srhiivr.ttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilkek 308 +P k an++iqei+rtP+r++s+ra+ + hi + +tkv++k+k+l+a+rek vt k kP+rltadl aetl+arre ++++ilke T327296_3 906 LPQHSKGANIQIQEIQRTPQRYSSRRATttPTHI-IV*FTKVEMKKKMLRAAREKCWVTHKRKPVRLTADLPAETLQARRE*G-PIFNILKEF 996 6888999*******************97224565.46779***************************************9554.9******** PP T---EEETTTEE CS Transposase_22 309 kfqPrllyPakl 320 q ++ P+kl T327296_3 997 STQNFISSPTKL 1008 ***********9 PP >> UBD Ubiquitin-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.1 0.085 6.9e+02 10 31 .. 80 104 .. 73 112 .. 0.71 2 ? 10.3 0.3 7e-05 0.57 3 50 .. 1321 1371 .. 1319 1391 .. 0.82 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.085 UBD 10 kwtskkr...pltraqlerereeFf 31 +w+s+ + +l ++ql+r+r++Ff T327296_3 80 QWASRAEncpRLPTSQLQRKRAQFF 104 565533311156789*********9 PP == domain 2 score: 10.3 bits; conditional E-value: 7e-05 UBD 3 kplrkekkwtskkrpltraqlerereeFfdT...rvtgrkeiWdalkaale 50 kpl+ ++ + + + +++++ e + Ff+T + t+ +++Wd+ ka+++ T327296_3 1321 KPLSYMETEQLLNDYWVHNEMKAEIKMFFETnenKDTTYQNLWDTFKAVCR 1371 666666665556889****************987788999*********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.77 # Mc/sec: 7988.03 // Query: T117619_1 [L=3346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.4 6.5 10.4 11 5.8 10.4 1.2 1 Med19 Mediator of RNA pol II transcription subunit 19 Domain annotation for each model (and alignments): >> Med19 Mediator of RNA pol II transcription subunit 19 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 10.4 0.00065 11 102 168 .. 985 1056 .. 976 1064 .. 0.54 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00065 Med19 102 rllkkqePkkknkekhkkskvkd......akseetlsdseteegfekkhkkkkkedDkerkkkkkekkkkkkr 168 r +++++P+++ + k++ k+ ++ l se+ g +kk+kkkkk++ k+r++++ k kk+ T117619_1 985 RGTENTPPTRAARAETVKRR-KEiagdgeLRDSLYLLFSEQLYGTKKKKKKKKKKKKKKRRRRRPAKAGGKKQ 1056 55667777777554433333.3322222222233334455666666777777767777777766666554443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 577 (0.0353857); expected 326.1 (0.02) Passed bias filter: 327 (0.020054); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:00.82 # Mc/sec: 11673.58 // Query: T117619_2 [L=3346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 724 (0.0444008); expected 326.1 (0.02) Passed bias filter: 366 (0.0224457); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.38s 00:00:02.18 Elapsed: 00:00:00.71 # Mc/sec: 13482.17 // Query: T117619_3 [L=3345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 801 (0.049123); expected 326.1 (0.02) Passed bias filter: 408 (0.0250215); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.41s 00:00:02.22 Elapsed: 00:00:00.79 # Mc/sec: 12113.26 // Query: T315958_1 [L=3556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-17 62.6 0.0 6.2e-17 62.0 0.0 1.2 1 RNase_H RNase H 3.2e-09 36.9 0.0 5.2e-09 36.2 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.0 0.0 7.6e-21 6.2e-17 4 142 .. 2573 2714 .. 2570 2715 .. 0.84 Alignments for each domain: == domain 1 score: 62.0 bits; conditional E-value: 7.6e-21 EEEEEEEEEECTTTEEEEEE.EE.CTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 4 vvvYtDGsclgnsgeggaga.vl.ykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 +++ D sc+ ++g+ ++g+ ++ ++ s+pl+ ++++ aEL+A+ie L + ++++vniytDSkY + ++ wk+++ t++++p+ T315958_1 2573 WILFRDRSCFVEQGTYKVGYaIVtLSD--TAESTPLSSGTSAQLAELIALIEGLAlS--KGKEVNIYTDSKYNFLILHAHATIWKERNF-LTANGSPI 2665 67999*********9999996552444..68889999*****************955..99**************78887777877777.577888** PP TTH.HHHHHHHHCHCSSEEEEEE-SCC.SSS...CHHHHHHHHHHHHHH CS RNase_H 99 knk.elaellkelakkkkvqlkhvkgH.aGd...pkgNemaDrlAkeaa 142 k + ++ ll+ ++ + +v++ h+kgH + ++gN+ D+ Ak+aa T315958_1 2666 KCH*KINRLLSLVFLPWEVTVIHCKGH*KRMdevAEGNRLTDQAAKSAA 2714 **56567777677***************65556789**********997 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.0 6.4e-13 5.2e-09 5 118 .. 2842 2951 .. 2840 2952 .. 0.90 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 6.4e-13 rve 5 gelwqvDvtvgripdgggkayllvviddfsrlilaeav.sdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgr 101 e wq+D+t+++ + +g yl v+id+f++++ a+++ +++ as+vi++l + + + +++ s ng+ ++ ++ + + lgi+ +f++++r T315958_1 2842 VEDWQMDFTHMS--KARGIQYLSVWIDTFTNWVEAFPC*TEK--ASEVIKVLINNIIPHFRL-SKYLQSNNGPLFKVAVTQGVSKALGIQYHFHCAWR 2934 577*********..66668******************99999..677777777777777776.79********************************* PP rve 102 pqdnGkvErfnrtlkde 118 pq Gkv ++n+++k++ T315958_1 2935 PQFSGKVKKTNGIIKRH 2951 ***************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.76 # Mc/sec: 13385.67 // Query: T315958_2 [L=3555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 88 (0.00539679); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.76 # Mc/sec: 13381.91 // Query: T315958_3 [L=3555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0018 18.4 0.0 0.0031 17.6 0.0 1.3 1 RVP Retroviral aspartyl protease 0.0038 17.1 3.0 0.036 14.0 0.5 2.8 2 zf-CCHC Zinc knuckle 0.005 16.2 0.0 0.0077 15.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase ------ inclusion threshold ------ 1.3 9.3 3.3 0.81 9.9 1.4 1.5 1 eIF3g Eukaryotic translation initiation factor 3 subunit Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 7.7e-07 0.0031 5 100 .. 1994 2094 .. 1991 2095 .. 0.85 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 7.7e-07 SEEEEEETTE...........EEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEE..STTSSSEEE- CS RVP 5 Pllkvkiggk...........yieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevspli..lpelpvnllG 89 P+++ i+++ ++ +llDtGA v+ + P + + +++++G++g+ t++ ++ +v ++e sp+ lpe+p +ll T315958_3 1994 PVVQTTITIQep*vilefeerKVDFLLDTGAGLLVLLSNPDPLS----SISTTMRGVSGKPLTHFFSKLLVVVGEISC----SPVTf*LPESPTPLLS 2083 7777777777778888888889**********************....9************99999997777776443....6677355********* PP HHHHCCCT-EE CS RVP 90 rdlLqklgvrL 100 rd+L ++g ++ T315958_3 2084 RDILAHIGTTI 2094 *****999876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.5 8.7e-06 0.036 2 13 .. 1927 1938 .. 1926 1939 .. 0.90 2 ? 2.2 0.1 0.048 2e+02 11 18 .] 1958 1965 .. 1955 1965 .. 0.91 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 8.7e-06 CTSSSSSSSSTT CS zf-CCHC 2 kCynCGepGHia 13 Cy+CG+ GH++ T315958_3 1927 NCYRCGKLGHFK 1938 7*********96 PP == domain 2 score: 2.2 bits; conditional E-value: 0.048 STTTTSTS CS zf-CCHC 11 HiardCpk 18 H++ dCp+ T315958_3 1958 HWKVDCPQ 1965 *******7 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 1.9e-06 0.0077 61 135 .. 2211 2263 .. 2193 2264 .. 0.78 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.9e-06 .HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST CS RVT_1 61 alkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqG 135 ++ + k++ +Dlk+aF+ +pl+ +++l+af p++ ++ ++++lpqG T315958_3 2211 LAQIPEGTKWFRVMDLKDAFFCIPLHPNSQYLFAFEDPSN----------------------QITQLTWTVLPQG 2263 44467788******************************66......................3566777777777 PP >> eIF3g Eukaryotic translation initiation factor 3 subunit G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 1.4 0.0002 0.81 104 121 .. 1948 1965 .. 1938 1968 .. 0.83 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.0002 eIF3g 104 lvkCriCkgdHfTskCPy 121 l C iC+gdH+ + CP+ T315958_3 1948 LQPCPICNGDHWKVDCPQ 1965 557**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.21u 0.29s 00:00:01.50 Elapsed: 00:00:00.67 # Mc/sec: 15179.48 // Query: T357416_1 [L=2842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.75 # Mc/sec: 10840.64 // Query: T357416_2 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-07 29.4 1.3 4e-07 29.4 1.3 1.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 0.29 4.7e+03 9 16 .. 1051 1058 .. 1051 1059 .. 0.81 2 ! 29.4 1.3 2.5e-11 4e-07 1 18 [. 1894 1911 .. 1894 1911 .. 0.95 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.29 DUF1725 9 LEnIILSE 16 LE+I+ ++ T357416_2 1051 LEEIMTKN 1058 9****666 PP == domain 2 score: 29.4 bits; conditional E-value: 2.5e-11 DUF1725 1 kFagKWMELEnIILSEis 18 +Fa++WMELE+IILS+ + T357416_2 1894 SFAATWMELETIILSKLT 1911 7**************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 12130.77 // Query: T357416_3 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:00.77 # Mc/sec: 10555.35 // Query: T138161_1 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 1972.47 // Query: T138161_2 [L=393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1198 (0.0734699); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 142 (0.00870845); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.79 # Mc/sec: 1423.17 // Query: T138161_3 [L=392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 35 (0.00214645); expected 326.1 (0.02) Passed bias filter: 5 (0.000306636); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.57 # Mc/sec: 1933.53 // Query: T124748_1 [L=519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0013 18.6 7.4 8.3 6.3 0.1 4.7 5 DUF2237 Uncharacterized protein conserved in bacteria (DUF2 ------ inclusion threshold ------ 0.059 13.7 0.0 47 4.3 0.0 4.1 6 DUF1889 Domain of unknown function (DUF1889) 3.6 7.4 23.2 1.6 8.5 0.6 4.6 5 Orexin Prepro-orexin Domain annotation for each model (and alignments): >> DUF2237 Uncharacterized protein conserved in bacteria (DUF2237) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 0.085 4.6e+02 5 46 .. 216 259 .. 213 282 .. 0.63 2 ! 5.0 0.1 0.0039 21 4 40 .. 299 337 .. 296 342 .. 0.86 3 ? 3.7 0.1 0.01 55 4 40 .. 327 365 .. 324 371 .. 0.82 4 ! 6.3 0.1 0.0015 8.3 4 40 .. 383 421 .. 380 448 .. 0.85 5 ! 6.2 0.0 0.0016 8.7 4 40 .. 467 505 .. 464 512 .. 0.87 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.085 SSB---S-TTTT-STTSS..SS----TT-TT-EEEEEE--HHHH CS DUF2237 5 geeLelcstdpltGfyrd..glCetseeDlGshtvcavvteeFL 46 +++L++++ + + + r + C++s +++ htv a+ ++ T124748_1 216 NQSLHTVGAQSIPAHSRRsiNPCTQSGHNQSLHTVGAQSITAHS 259 56666666666666666522458888888888888776544444 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0039 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++L++++ +p+ + r +++C++s+ ++ +htv a+ T124748_1 299 LNQSLHTVGAQPIPAHSRrsTNHCTQSALNQSQHTVGAQ 337 78999*******99998844689*************986 PP == domain 3 score: 3.7 bits; conditional E-value: 0.01 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++ ++++ +p+t + r ++ C++s+ ++ +htv a+ T124748_1 327 LNQSQHTVGAQPITAHSRrsTNPCTQSALNQSQHTVGAQ 365 5667788899*****99944467*************986 PP == domain 4 score: 6.3 bits; conditional E-value: 0.0015 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvcav 40 l+++L++++ +p+t + r + C++s+ ++ htv a+ T124748_1 383 LNQSLHTVGAQPITAHSRRSInpCTQSALNQSLHTVGAQ 421 7999*************986444*************886 PP == domain 5 score: 6.2 bits; conditional E-value: 0.0016 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++L++++ +p+t + r ++ C++s ++ +htv a+ T124748_1 467 LNQSLHTVGAQPITAHSRrsTNPCTQSVLNKSQHTVGAQ 505 8999************9944467*************986 PP >> DUF1889 Domain of unknown function (DUF1889) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.052 2.8e+02 26 67 .. 216 257 .. 211 279 .. 0.72 2 ? 0.6 0.0 0.12 6.4e+02 27 61 .. 245 279 .. 237 303 .. 0.77 3 ? -0.8 0.0 0.32 1.7e+03 36 62 .. 282 308 .. 252 344 .. 0.62 4 ? 0.4 0.0 0.14 7.7e+02 26 63 .. 356 393 .. 345 405 .. 0.81 5 ? 4.3 0.0 0.0086 47 24 64 .. 410 450 .. 403 471 .. 0.83 6 ? -2.2 0.0 0.88 4.8e+03 23 49 .. 493 519 .] 487 519 .] 0.88 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.052 DUF1889 26 dkaldfigamdvsaptpssmnestakgifkylkelgvpasaa 67 +++l +ga + a + s+n t g + l+ +g + +a T124748_1 216 NQSLHTVGAQSIPAHSRRSINPCTQSGHNQSLHTVGAQSITA 257 567778888888888888888888888888887777654443 PP == domain 2 score: 0.6 bits; conditional E-value: 0.12 DUF1889 27 kaldfigamdvsaptpssmnestakgifkylkelg 61 ++l +ga ++a + s n st + + + +g T124748_1 245 QSLHTVGAQSITAHSRHSTNHSTQSSLNQSQHTVG 279 6788999**************99988777666665 PP == domain 3 score: -0.8 bits; conditional E-value: 0.32 DUF1889 36 dvsaptpssmnestakgifkylkelgv 62 + a + s n st + + l+ +g T124748_1 282 PIPAHSRRSTNHSTQSALNQSLHTVGA 308 555555555555555555555555542 PP == domain 4 score: 0.4 bits; conditional E-value: 0.14 DUF1889 26 dkaldfigamdvsaptpssmnestakgifkylkelgvp 63 +++ +ga ++a + s n st + + l+ +g T124748_1 356 NQSQHTVGAQPITAHSRRSTNHSTQSALNQSLHTVGAQ 393 556677999999999999*****999999999888864 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0086 DUF1889 24 vidkaldfigamdvsaptpssmnestakgifkylkelgvpa 64 ++++l +ga +++a + s n st + + l+ +g + T124748_1 410 ALNQSLHTVGAQQITAHSRRSTNHSTQSALNQSLHTVGAQS 450 5678999*********************9999999988543 PP == domain 6 score: -2.2 bits; conditional E-value: 0.88 DUF1889 23 avidkaldfigamdvsaptpssmnest 49 +v++k+ +ga + a + s n st T124748_1 493 SVLNKSQHTVGAQSIPAHSRRSTNHST 519 689999999****99999999999987 PP >> Orexin Prepro-orexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.1 0.97 5.3e+03 12 36 .. 3 29 .. 2 31 .. 0.73 2 ? 1.4 0.4 0.049 2.7e+02 29 89 .. 221 253 .. 191 291 .. 0.53 3 ? 7.7 2.2 0.00052 2.8 29 103 .. 305 377 .. 295 397 .. 0.77 4 ? 4.7 0.3 0.0045 24 52 99 .. 387 429 .. 359 442 .. 0.64 5 ? 8.5 0.6 0.0003 1.6 29 88 .. 445 504 .. 436 517 .. 0.83 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.97 Orexin 12 avtlllllllppallslgv..aaqslp 36 +tl+l +l ++ll +v aaq lp T124748_1 3 GCTLMLGAVLSQTLLGQAVgpAAQRLP 29 689999999999999766522677777 PP == domain 2 score: 1.4 bits; conditional E-value: 0.049 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGnh 89 +v+aqs+p rr++ p q+ ++ l++ G T124748_1 221 TVGAQSIPAHS----------------------------RRSINPCTQSGHNQSLHTVGAQ 253 23344444444............................4455555554444444444422 PP == domain 3 score: 7.7 bits; conditional E-value: 0.00052 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrragae 103 +v+aq++p r+ t c l + a +t rr++ p q+ l++ ++ G a i + rr+ + T124748_1 305 TVGAQPIPAHSRRSTNHCTQSALNQSQHTVGAQPITAHSRRSTNPCTQSALNQSQHTVG--AQPITAHSRRSTNH 377 6899**************999998888777788899999***********999888887..44566666665444 PP == domain 4 score: 4.7 bits; conditional E-value: 0.0045 Orexin 52 lhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrr 99 lh +G a +t rr++ p q+ l++ l++ G i + rr T124748_1 387 LHTVG---AQPITAHSRRSINPCTQSALNQSLHTVGA--QQITAHSRR 429 44444...44578889****************99985..345555555 PP == domain 5 score: 8.5 bits; conditional E-value: 0.0003 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGn 88 +v+aqs+p r+ t +c l a +t rr++ p q+ l++ ++ G T124748_1 445 TVGAQSIPAHSRRSTNPCTQSALNQSLHTVGAQPITAHSRRSTNPCTQSVLNKSQHTVGA 504 6899**************998887766666677789999***********9998888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 631 (0.0386974); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.69 # Mc/sec: 2151.84 // Query: T124748_2 [L=519] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0024 17.7 7.0 9.1 6.2 0.0 5.0 6 DUF2237 Uncharacterized protein conserved in bacteria (DUF2 ------ inclusion threshold ------ 0.085 12.7 16.3 0.35 10.7 2.3 4.1 4 Orexin Prepro-orexin Domain annotation for each model (and alignments): >> DUF2237 Uncharacterized protein conserved in bacteria (DUF2237) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.61 5e+03 16 40 .. 210 234 .. 197 239 .. 0.71 2 ? 2.5 0.0 0.015 1.2e+02 4 39 .. 252 289 .. 249 290 .. 0.75 3 ! 6.2 0.0 0.0011 9.1 4 40 .. 280 318 .. 277 333 .. 0.85 4 ! 3.8 0.1 0.0062 50 4 40 .. 364 402 .. 361 411 .. 0.83 5 ! 5.4 0.0 0.002 16 4 40 .. 420 458 .. 417 463 .. 0.87 6 ! 4.8 0.1 0.003 25 4 40 .. 448 486 .. 445 498 .. 0.87 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.61 T-STTSSSS----TT-TT-EEEEEE CS DUF2237 16 ltGfyrdglCetseeDlGshtvcav 40 + ++ C++s+ ++ htv a+ T124748_2 210 AHSWHSISPCTQSALNQSLHTVGAQ 234 4556666779999999999999876 PP == domain 2 score: 2.5 bits; conditional E-value: 0.015 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvca 39 l+++L++++t+p+t + r + ++s+ ++ htv a T124748_2 252 LNQSLHTVGTQPITAHSRRSTnhSTQSALNQSLHTVGA 289 899*************9975500455566778888876 PP == domain 3 score: 6.2 bits; conditional E-value: 0.0011 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvcav 40 l+++L++++ +p+t + r + C++s+ ++ htv a+ T124748_2 280 LNQSLHTVGAQPITAHSRRSInpCTQSALNQSLHTVGAQ 318 8999**************86444*************886 PP == domain 4 score: 3.8 bits; conditional E-value: 0.0062 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++ ++++ +p+t + r ++ C++s+ ++ +htv a+ T124748_2 364 LNQSQHTVGAQPITAHSRhsTNPCTQSALNQSQHTVGAQ 402 5667788899******9933467*************986 PP == domain 5 score: 5.4 bits; conditional E-value: 0.002 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++L++++ +p+t + r ++ C++s+ ++ htv a+ T124748_2 420 LNKSLHTVGAQPITAHSRrsTNPCTQSALNQSLHTVGAQ 458 7899************9944467*************986 PP == domain 6 score: 4.8 bits; conditional E-value: 0.003 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++L++++ +p+ + r +++C++s+ ++ +htv a+ T124748_2 448 LNQSLHTVGAQPIPAHSRrsTNHCTQSALNQSQHTVGAQ 486 78999*******99998844689*************986 PP >> Orexin Prepro-orexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.3 0.0016 13 29 88 .. 230 289 .. 221 294 .. 0.82 2 ? 4.4 0.2 0.0038 31 64 119 .. 293 346 .. 287 356 .. 0.75 3 ? 0.3 0.1 0.068 5.6e+02 29 82 .. 342 395 .. 334 400 .. 0.76 4 ? 10.7 2.3 4.3e-05 0.35 29 101 .. 398 468 .. 390 493 .. 0.79 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0016 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGn 88 +v+aqs+p r t +c l + +t rr++ + q+ l++ l++ G T124748_2 230 TVGAQSIPAHSRGTTNPCTQSALNQSLHTVGTQPITAHSRRSTNHSTQSALNQSLHTVGA 289 6899**************988775555444455689999**************9999885 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0038 Orexin 64 tlGkrragppalqgrlqrllqasGnhaaGiltlGrragaerapracdarrcaaaaa 119 t rr++ p q+ l++ l++ G a i + rr+ + + a ++ + + +a+ T124748_2 293 TAHSRRSINPCTQSALNQSLHTVG--AQQITAHSRRSTNHSTQSALNQSQHTVGAQ 346 55679****************999..556778888877766666666555555554 PP == domain 3 score: 0.3 bits; conditional E-value: 0.068 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrl 82 +v+aq++p r+ t l + a +t r+++ p q+ l++ T124748_2 342 TVGAQPIPAHSRRSTNHSTQSALNQSQHTVGAQPITAHSRHSTNPCTQSALNQS 395 678899999999988888877777666666666788888999999999888765 PP == domain 4 score: 10.7 bits; conditional E-value: 4.3e-05 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrrag 101 +v+aqs+p r+ t +c l + a +t rr++ p q+ l++ l++ G i + rr+ T124748_2 398 TVGAQSIPAHSRRSTNPCTQSALNKSLHTVGAQPITAHSRRSTNPCTQSALNQSLHTVGA--QPIPAHSRRST 468 789***************99998777777777889999******************9995..45555566655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (519 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 683 (0.0418864); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.72 # Mc/sec: 2062.18 // Query: T124748_3 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0026 17.6 5.5 23 4.9 0.0 5.1 6 DUF2237 Uncharacterized protein conserved in bacteria (DUF2 0.0099 15.8 1.3 28 4.7 0.0 3.9 5 DUF1950 Domain of unknown function(DUF1950) ------ inclusion threshold ------ 0.11 12.7 0.0 33 4.8 0.0 3.5 4 DUF1889 Domain of unknown function (DUF1889) 0.22 11.4 21.2 0.77 9.6 1.6 4.0 4 Orexin Prepro-orexin 0.42 10.3 1.3 41 3.9 0.1 2.9 3 DUF2393 Protein of unknown function (DUF2393) 0.64 9.8 11.4 24 4.7 0.0 5.2 6 DUF2706 Protein of unknown function (DUF2706) 2 8.3 11.5 12 5.8 0.5 4.3 3 DUF1151 Protein of unknown function (DUF1151) Domain annotation for each model (and alignments): >> DUF2237 Uncharacterized protein conserved in bacteria (DUF2237) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.01 23 4 40 .. 233 271 .. 230 282 .. 0.84 2 ? 2.9 0.1 0.041 95 5 40 .. 262 299 .. 258 306 .. 0.81 3 ? 1.8 0.0 0.088 2e+02 4 40 .. 317 355 .. 314 360 .. 0.76 4 ? 1.9 0.0 0.085 2e+02 4 38 .. 345 381 .. 342 386 .. 0.77 5 ? 4.6 0.0 0.012 28 4 40 .. 401 439 .. 398 443 .. 0.87 6 ? 2.6 0.0 0.049 1.2e+02 4 40 .. 457 495 .. 454 504 .. 0.77 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.01 TSSB---S-TTTT-STTSS..SS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyrd..glCetseeDlGshtvcav 40 l+++L++++ +p+ + r ++C++s+ ++ +htv a+ T124748_3 233 LNQSLHTVGAQPIPAHSRRsiNHCTQSALNQSQHTVVAQ 271 7899********99999974468************9987 PP == domain 2 score: 2.9 bits; conditional E-value: 0.041 SSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 5 geeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 +++ +++ +p+t + r ++ C++s+ ++ +htv a+ T124748_3 262 NQSQHTVVAQPITAHSRhsTNPCTQSALNQSQHTVGAQ 299 5666777889999999933467*************986 PP == domain 3 score: 1.8 bits; conditional E-value: 0.088 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvcav 40 l+++L++++ +p+t + r + ++s+ ++ htv a+ T124748_3 317 LNKSLHTVGAQPITAHSRRSTnhSTQSALNQSLHTVGAQ 355 7899************99755005556667888998875 PP == domain 4 score: 1.9 bits; conditional E-value: 0.085 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvc 38 l+++L++++ +p+t + r + ++s+ ++ +htv T124748_3 345 LNQSLHTVGAQPITAHSRRSTnhSTQSALNQSQHTVG 381 7999************997551055566788889886 PP == domain 5 score: 4.6 bits; conditional E-value: 0.012 TSSB---S-TTTT-STTS..SSS----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyr..dglCetseeDlGshtvcav 40 l+++L++++ +p+ + r +++C++s+ ++ +htv a+ T124748_3 401 LNQSLHTVGAQPIPAHSRrsTNHCTQSALNQSQHTVGAQ 439 78999*******99998844689*************986 PP == domain 6 score: 2.6 bits; conditional E-value: 0.049 TSSB---S-TTTT-STTSSSS..----TT-TT-EEEEEE CS DUF2237 4 lgeeLelcstdpltGfyrdgl..CetseeDlGshtvcav 40 l+++L++++ +p+t + r + ++s+ ++ htv a+ T124748_3 457 LNQSLHTVGAQPITAHSRRSTnhSTQSALNQSLHTVGAQ 495 7999************99755105566678889999875 PP >> DUF1950 Domain of unknown function(DUF1950) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.03 70 14 46 .. 242 274 .. 229 302 .. 0.85 2 ? -1.1 0.0 0.75 1.7e+03 14 46 .. 298 330 .. 285 352 .. 0.73 3 ? -1.6 0.0 1 2.4e+03 16 46 .. 328 358 .. 322 379 .. 0.72 4 ? 3.2 0.0 0.034 79 9 45 .. 377 413 .. 369 434 .. 0.83 5 ? 4.7 0.0 0.012 28 9 46 .. 433 470 .. 426 488 .. 0.85 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.03 TS---SSSSS----SSHHHHHHHHHHHHT---- CS DUF1950 14 eiPiPasrgsvipftsWvglaksikqlygqPlh 46 PiPa+ i + l +s + + qP+ T124748_3 242 AQPIPAHSRRSINHCTQSALNQSQHTVVAQPIT 274 57*****************************85 PP == domain 2 score: -1.1 bits; conditional E-value: 0.75 TS---SSSSS----SSHHHHHHHHHHHHT---- CS DUF1950 14 eiPiPasrgsvipftsWvglaksikqlygqPlh 46 iPa+ + l ks++ + qP+ T124748_3 298 AQSIPAHSRRSTNPCTQSALNKSLHTVGAQPIT 330 556787776666666778899999999999975 PP == domain 3 score: -1.6 bits; conditional E-value: 1 ---SSSSS----SSHHHHHHHHHHHHT---- CS DUF1950 16 PiPasrgsvipftsWvglaksikqlygqPlh 46 Pi a+ ++ l +s++ + qP+ T124748_3 328 PITAHSRRSTNHSTQSALNQSLHTVGAQPIT 358 7777777777778888888888888888875 PP == domain 4 score: 3.2 bits; conditional E-value: 0.034 HHHHHTS---SSSSS----SSHHHHHHHHHHHHT--- CS DUF1950 9 qeymkeiPiPasrgsvipftsWvglaksikqlygqPl 45 q+ + + PiPa+ ++ l +s++ + qP+ T124748_3 377 QHTVGTQPIPAHSRRSTNHSTQSALNQSLHTVGAQPI 413 6667788****************************97 PP == domain 5 score: 4.7 bits; conditional E-value: 0.012 HHHHHTS---SSSSS----SSHHHHHHHHHHHHT---- CS DUF1950 9 qeymkeiPiPasrgsvipftsWvglaksikqlygqPlh 46 q+ + PiPa+ i + l +s++ + qP+ T124748_3 433 QHTVGAQPIPAHSRRSINPCTQSALNQSLHTVGAQPIT 470 5666788*****************************85 PP >> DUF1889 Domain of unknown function (DUF1889) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 1.3 3e+03 24 47 .. 232 255 .. 203 269 .. 0.57 2 ? 4.8 0.0 0.014 33 24 63 .. 316 355 .. 305 374 .. 0.84 3 ? -1.0 0.0 0.88 2.1e+03 32 62 .. 380 410 .. 362 439 .. 0.61 4 ? 2.8 0.0 0.056 1.3e+02 24 64 .. 456 496 .. 447 511 .. 0.83 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 1.3 DUF1889 24 vidkaldfigamdvsaptpssmne 47 ++++l +ga + a + s+n T124748_3 232 ALNQSLHTVGAQPIPAHSRRSINH 255 234445555555555555555555 PP == domain 2 score: 4.8 bits; conditional E-value: 0.014 DUF1889 24 vidkaldfigamdvsaptpssmnestakgifkylkelgvp 63 ++k+l +ga ++a + s n st + + l+ +g T124748_3 316 ALNKSLHTVGAQPITAHSRRSTNHSTQSALNQSLHTVGAQ 355 67999*********************99999999988864 PP == domain 3 score: -1.0 bits; conditional E-value: 0.88 DUF1889 32 igamdvsaptpssmnestakgifkylkelgv 62 +g+ + a + s n st + + l+ +g T124748_3 380 VGTQPIPAHSRRSTNHSTQSALNQSLHTVGA 410 5566666666666677776666666666653 PP == domain 4 score: 2.8 bits; conditional E-value: 0.056 DUF1889 24 vidkaldfigamdvsaptpssmnestakgifkylkelgvpa 64 ++++l +ga ++a + s n st + + l+ +g T124748_3 456 ALNQSLHTVGAQPITAHSRRSTNHSTQSALNQSLHTVGAQQ 496 567889999999999*9999*****9999999998888654 PP >> Orexin Prepro-orexin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 1.3 0.036 84 52 99 .. 209 251 .. 166 281 .. 0.67 2 ? 2.6 0.3 0.049 1.1e+02 29 87 .. 239 297 .. 232 300 .. 0.89 3 ? 9.6 1.6 0.00033 0.77 29 119 .. 295 383 .. 287 393 .. 0.81 4 ? 9.0 3.0 0.00049 1.1 29 110 .. 407 486 .. 399 512 .. 0.74 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.036 Orexin 52 lhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrr 99 lh aG + + rr++ p q+ l++ l++ G i + rr T124748_3 209 LHTAGTQS---VPAHSRRSINPCTQSALNQSLHTVGA--QPIPAHSRR 251 44444433...2345799**************99984..445555555 PP == domain 2 score: 2.6 bits; conditional E-value: 0.049 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasG 87 +v+aq++p r+ c l + a +t r+++ p q+ l++ ++ G T124748_3 239 TVGAQPIPAHSRRSINHCTQSALNQSQHTVVAQPITAHSRHSTNPCTQSALNQSQHTVG 297 6899******************9999999999999**************9998777666 PP == domain 3 score: 9.6 bits; conditional E-value: 0.00033 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrragaerapracdarrcaaaaa 119 +v+aqs+p r+ t +c l + a +t rr++ + q+ l++ l++ G a i + rr+ + + a ++ + + +++ T124748_3 295 TVGAQSIPAHSRRSTNPCTQSALNKSLHTVGAQPITAHSRRSTNHSTQSALNQSLHTVG--AQPITAHSRRSTNHSTQSALNQSQHTVGTQ 383 689***************99998777777777789999*******************99..566778888877776666666666665555 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00049 Orexin 29 gvaaqslpdccrqktcscrlyellhgaGnhaaGiltlGkrragppalqgrlqrllqasGnhaaGiltlGrragaerapracd 110 +v+aq++p r+ t c l + a + rr++ p q+ l++ l++ G a i + rr+ + + a + T124748_3 407 TVGAQPIPAHSRRSTNHCTQSALNQSQHTVGAQPIPAHSRRSINPCTQSALNQSLHTVG--AQPITAHSRRSTNHSTQSALN 486 6899**************999998777666666677889*****************999..556777777765554444433 PP >> DUF2393 Protein of unknown function (DUF2393) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 0.1 0.018 41 47 84 .. 251 288 .. 247 345 .. 0.85 2 ? -1.4 0.0 0.73 1.7e+03 48 81 .. 420 453 .. 415 457 .. 0.88 3 ? 3.9 0.1 0.018 41 47 81 .. 475 509 .. 464 515 .. 0.92 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.018 DUF2393 47 ieitilsqkrllyteafvvkgtitNeGkftikeCklti 84 + i++ +q++l++++ +vv+ it ++++ + C+ ++ T124748_3 251 RSINHCTQSALNQSQHTVVAQPITAHSRHSTNPCTQSA 288 5789999*************************998654 PP == domain 2 score: -1.4 bits; conditional E-value: 0.73 DUF2393 48 eitilsqkrllyteafvvkgtitNeGkftikeCk 81 +++ +q++l++++ +v + i ++++ i+ C+ T124748_3 420 STNHCTQSALNQSQHTVGAQPIPAHSRRSINPCT 453 6788899999999999999999999999999998 PP == domain 3 score: 3.9 bits; conditional E-value: 0.018 DUF2393 47 ieitilsqkrllyteafvvkgtitNeGkftikeCk 81 + +++++q++l+++ +v + +it ++++ i+ C+ T124748_3 475 RSTNHSTQSALNQSLHTVGAQQITAHSRRSINPCT 509 578999****************************8 PP >> DUF2706 Protein of unknown function (DUF2706) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.1 3.4 8e+03 17 23 .. 171 177 .. 168 179 .. 0.77 2 ? 2.1 0.1 0.07 1.6e+02 40 54 .. 220 234 .. 199 236 .. 0.79 3 ? 4.7 0.0 0.01 24 19 54 .. 255 290 .. 251 294 .. 0.90 4 ? -1.3 0.1 0.77 1.8e+03 40 54 .. 304 318 .. 298 320 .. 0.77 5 ? 3.4 0.1 0.027 63 20 54 .. 424 458 .. 421 461 .. 0.73 6 ? 2.8 0.0 0.042 98 37 54 .. 497 514 .. 491 517 .. 0.81 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 3.4 DUF2706 17 llsctPs 23 +lsc+P+ T124748_3 171 VLSCAPA 177 79**995 PP == domain 2 score: 2.1 bits; conditional E-value: 0.07 DUF2706 40 nsslsinPcirrPin 54 s sinPc + +n T124748_3 220 HSRRSINPCTQSALN 234 6778*****987776 PP == domain 3 score: 4.7 bits; conditional E-value: 0.01 DUF2706 19 sctPsaPyeiksPcvsvdiddnsslsinPcirrPin 54 ct sa + + v+ i s s nPc + +n T124748_3 255 HCTQSALNQSQHTVVAQPITAHSRHSTNPCTQSALN 290 6999**99999*******************988777 PP == domain 4 score: -1.3 bits; conditional E-value: 0.77 DUF2706 40 nsslsinPcirrPin 54 s s nPc + +n T124748_3 304 HSRRSTNPCTQSALN 318 577899***887766 PP == domain 5 score: 3.4 bits; conditional E-value: 0.027 DUF2706 20 ctPsaPyeiksPcvsvdiddnsslsinPcirrPin 54 ct sa + + + i s sinPc + +n T124748_3 424 CTQSALNQSQHTVGAQPIPAHSRRSINPCTQSALN 458 666666666655556667788999*****988776 PP == domain 6 score: 2.8 bits; conditional E-value: 0.042 DUF2706 37 iddnsslsinPcirrPin 54 i s sinPc + +n T124748_3 497 ITAHSRRSINPCTQSALN 514 5667889*****988777 PP >> DUF1151 Protein of unknown function (DUF1151) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.1 0.082 1.9e+02 10 26 .. 222 238 .. 217 240 .. 0.91 2 ? 5.8 0.5 0.0049 12 10 76 .. 306 375 .. 299 379 .. 0.84 3 ? 4.4 0.5 0.013 31 10 72 .. 446 511 .. 441 518 .] 0.69 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.082 DUF1151 10 kKlanpvleskshqeLh 26 ++ +np+++s q Lh T124748_3 222 RRSINPCTQSALNQSLH 238 8899************9 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0049 DUF1151 10 kKlanpvleskshqeLh....rELllnqkrglvleeKpELqrvlekrkeeqvlkqkkeeeeakkkkseLeq 76 ++ +np+++s + Lh + + + +r ++ ++ + L++ l q + ++ ++++++++s+L+q T124748_3 306 RRSTNPCTQSALNKSLHtvgaQPITAHSRRSTNHSTQSALNQSLHTVG-AQPITAHSRRSTNHSTQSALNQ 375 789999999999999996665578888888999999999999999998.5889999999999999999987 PP == domain 3 score: 4.4 bits; conditional E-value: 0.013 DUF1151 10 kKlanpvleskshqeLh....rELllnqkrglvleeKpELqrvlekrkeeqvlkqkkeeeeakkkks 72 ++ +np+++s q Lh + + + +r ++ ++ + L++ l q + ++ ++ + ++s T124748_3 446 RRSINPCTQSALNQSLHtvgaQPITAHSRRSTNHSTQSALNQSLHTVGA-QQITAHSRRSINPCTQS 511 7889999999999999955555677777778888888888888877775.44444444444444555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.67 # Mc/sec: 2211.81 // Query: T018926_1 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 5833.85 // Query: T018926_2 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 4718.10 // Query: T018926_3 [L=1039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 5037.97 // Query: T212568_1 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.64 # Mc/sec: 11818.80 // Query: T212568_2 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 11123.58 // Query: T212568_3 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.28s 00:00:01.37 Elapsed: 00:00:00.66 # Mc/sec: 11460.66 // Query: T090260_1 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.59 # Mc/sec: 5775.00 // Query: T090260_2 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.65 # Mc/sec: 5237.52 // Query: T090260_3 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.69 # Mc/sec: 4933.90 // Query: T020235_1 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 594 (0.0364283); expected 326.1 (0.02) Passed bias filter: 270 (0.0165583); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.57 # Mc/sec: 4912.74 // Query: T020235_2 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44 # Mc/sec: 6475.88 // Query: T020235_3 [L=996] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (996 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5698.77 // Query: T288971_1 [L=1637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 8836.19 // Query: T288971_2 [L=1637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 9182.70 // Query: T288971_3 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 9177.09 // Query: T215850_1 [L=1912] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1912 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 10519.05 // Query: T215850_2 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 10315.18 // Query: T215850_3 [L=1911] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-36 122.1 24.5 9.4e-36 122.1 24.5 4.1 4 FAM27 FAM27 D and E protein family Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.1 0.03 4.8e+02 22 46 .. 224 248 .. 211 257 .. 0.85 2 ! 122.1 24.5 5.7e-40 9.4e-36 1 91 [] 316 406 .. 316 406 .. 0.98 3 ? -2.9 2.4 0.56 9.1e+03 51 60 .. 1290 1299 .. 1287 1301 .. 0.49 4 ? -4.6 6.5 1 1.6e+04 61 76 .. 1597 1612 .. 1589 1619 .. 0.81 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.03 FAM27 22 etkkeaeqkrqaamreialwatGti 46 t ++a+++r+++ r++a++ G + T215850_3 224 TTMRKAQRRRGKQHRNPASGLPGWC 248 5778999999*******99999887 PP == domain 2 score: 122.1 bits; conditional E-value: 5.7e-40 FAM27 1 shtPkadpr.rkrLttglmtqaetkkeaeqkrqaamreialwatGtirPkththtgthtqtdRereRnrqrlRdrerRengrhtrthartkt 91 +h kadpr rkrLttglmtqaet+ke + +rqaam+e+alw tG+i+Pkth htgthtqt+Re+eRn+qrlRdrerRengrht+t ++ +t T215850_3 316 FHAAKADPRgRKRLTTGLMTQAETQKEVQ-QRQAAMQETALWFTGHIQPKTHKHTGTHTQTHREWERNTQRLRDRERRENGRHTHTQTKGHT 406 6899************************9.**********************************************************9987 PP == domain 3 score: -2.9 bits; conditional E-value: 0.56 FAM27 51 hthtgthtqt 60 h+ht tht t T215850_3 1290 HAHTHTHTLT 1299 3444444433 PP == domain 4 score: -4.6 bits; conditional E-value: 1 FAM27 61 dRereRnrqrlRdrer 76 +++r+R r+r Rdr + T215850_3 1597 KKDRRRRRRRPRDRGK 1612 5788888889998877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1911 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 9940.08 // Query: T353469_1 [L=1301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1614 (0.098982); expected 326.1 (0.02) Passed bias filter: 358 (0.0219551); expected 326.1 (0.02) Passed Vit filter: 171 (0.0104869); expected 16.3 (0.001) Passed Fwd filter: 47 (0.00288237); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.60 # Mc/sec: 6203.23 // Query: T353469_2 [L=1301] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1301 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1363 (0.0835889); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.53 # Mc/sec: 7022.53 // Query: T353469_3 [L=1300] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1300 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1416 (0.0868392); expected 326.1 (0.02) Passed bias filter: 317 (0.0194407); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 6887.18 // Query: T228196_1 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 14309.45 // Query: T228196_2 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.4 6.7 71.8 8.5 6.5 4.3 8.5 7 DUF765 Circovirus protein of unknown function (DUF765) Domain annotation for each model (and alignments): >> DUF765 Circovirus protein of unknown function (DUF765) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 4.3 0.00052 8.5 2 25 .. 786 809 .. 785 811 .. 0.92 2 ? 5.0 3.2 0.0016 26 2 20 .. 842 860 .. 841 864 .. 0.87 3 ? 6.5 4.3 0.00052 8.5 2 25 .. 898 921 .. 897 923 .. 0.92 4 ? 6.4 2.6 0.00055 9 2 25 .. 954 977 .. 953 979 .. 0.88 5 ? 6.5 4.3 0.00052 8.5 2 25 .. 1010 1033 .. 1009 1035 .. 0.92 6 ? 5.0 3.2 0.0016 26 2 20 .. 1066 1084 .. 1065 1088 .. 0.87 7 ? 5.9 2.9 0.00082 13 2 20 .. 1122 1140 .. 1121 1142 .. 0.90 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00052 DUF765 2 ASSTPASPAPSDILSsvPQSeRPP 25 AS TPASPA LSsv Q PP T228196_2 786 ASNTPASPAVWTGLSSVCQPPIPP 809 9****************9988887 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0016 DUF765 2 ASSTPASPAPSDILSsvPQ 20 AS TPASPA LSsv Q T228196_2 842 ASNTPASPAVWMGLSSVCQ 860 9********8888888877 PP == domain 3 score: 6.5 bits; conditional E-value: 0.00052 DUF765 2 ASSTPASPAPSDILSsvPQSeRPP 25 AS TPASPA LSsv Q PP T228196_2 898 ASNTPASPAVWTGLSSVCQPPIPP 921 9****************9988887 PP == domain 4 score: 6.4 bits; conditional E-value: 0.00055 DUF765 2 ASSTPASPAPSDILSsvPQSeRPP 25 AS TPASPA LSsv Q PP T228196_2 954 ASNTPASPAVWMGLSSVFQPPIPP 977 9********999999998877777 PP == domain 5 score: 6.5 bits; conditional E-value: 0.00052 DUF765 2 ASSTPASPAPSDILSsvPQSeRPP 25 AS TPASPA LSsv Q PP T228196_2 1010 ASNTPASPAVWTGLSSVCQPPIPP 1033 9****************9988887 PP == domain 6 score: 5.0 bits; conditional E-value: 0.0016 DUF765 2 ASSTPASPAPSDILSsvPQ 20 AS TPASPA LSsv Q T228196_2 1066 ASNTPASPAVWMGLSSVCQ 1084 9********8888888877 PP == domain 7 score: 5.9 bits; conditional E-value: 0.00082 DUF765 2 ASSTPASPAPSDILSsvPQ 20 AS TPASPA LSsv Q T228196_2 1122 ASNTPASPAVWTGLSSVCQ 1140 9********9999999877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 14049.28 // Query: T228196_3 [L=2701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2701 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.54 # Mc/sec: 14309.45 // Query: T093086_1 [L=681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-30 105.8 14.9 5.5e-28 97.7 8.2 3.0 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.7 8.2 3.4e-32 5.5e-28 167 302 .. 23 153 .. 21 155 .. 0.90 2 ! 9.0 0.5 3.1e-05 0.51 341 367 .. 193 221 .. 180 222 .. 0.84 Alignments for each domain: == domain 1 score: 97.7 bits; conditional E-value: 3.4e-32 HHHHHHHHHHHHHH.HHHHHHHTTTEE.EEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSS.S--EEEEEESSH CS Transposase_22 167 kerekrkkileqsl.qviqdtvkrPnl.rliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskra.ssrhiivrttkv 258 k++ekr+k++eq+l +d+vkr nl G++e + e+ +leni+++i++enfP l+++ n++iq ++rtP r sk + s +r T093086_1 23 KNEEKRIKKNEQNL*ET-WDYVKRANL*L-TGIPERDAEKASNLENIFQDIVHENFPTLARQTNIQIQKMQRTPVRTISKTQ*SD---FIR---- 108 8899*********8885.********554.5*********************************************999976665...345.... PP HHH..HHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHH CS Transposase_22 259 lnk..dkilkavrekGrvtlkGkPirltadlsaetlkarrewtdvi 302 k +k+lk +rekGrvt+kGkPi lta ls etl+ar+ + i T093086_1 109 -SK*eNKMLKEAREKGRVTYKGKPIGLTAGLSGETLQARKRFRAYI 153 .455589********************************9886655 PP == domain 2 score: 9.0 bits; conditional E-value: 3.1e-05 HTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 341 lstrPalkrllke..knerkdryqaleqa 367 + t+Pal+++lk +++rkd yq+l+++ T093086_1 193 MLTKPALQEVLKSalNMKRKDDYQSLKKH 221 4579********999***********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3746.59 // Query: T093086_2 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-20 71.1 0.5 9.6e-20 70.1 0.5 1.5 1 Transposase_1 Transposase (partial DDE domain) 2.7e-11 42.8 0.0 3.8e-11 42.3 0.0 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 0.5 1.2e-23 9.6e-20 3 61 .. 489 547 .. 487 547 .. 0.95 Alignments for each domain: == domain 1 score: 70.1 bits; conditional E-value: 1.2e-23 Transposase_1 3 enkkrsaqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaq 61 +++ + + W+dk + k +pkp+lhqk vm+tVwWsa++li+y+fl+p etits +Yaq T093086_2 489 TSNDQLSGWTDKKLQRKNFPKPSLHQKEVMVTVWWSAASLIFYSFLNPIETITSVKYAQ 547 56778999*************************************************97 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.0 4.7e-15 3.8e-11 294 338 .. 145 189 .. 137 197 .. 0.89 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 4.7e-15 HHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHH CS Transposase_22 294 arrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklr 338 r+ ++ il e++fqP +lyPakls i++Gei+ f dk++l T093086_2 145 PERDSELIFSILEENNFQPGILYPAKLSSISEGEIRSFTDKQMLS 189 56777789***********************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3814.44 // Query: T093086_3 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.047 13.1 0.0 0.1 12.1 0.0 1.5 1 HTH_24 Winged helix-turn-helix DNA-binding 0.079 12.2 0.0 0.15 11.3 0.0 1.4 1 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal Domain annotation for each model (and alignments): >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 1.2e-05 0.1 11 39 .. 401 429 .. 398 430 .. 0.90 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.2e-05 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p ++ +e+Ae+l++ + v ++lk T093086_3 401 IIKADPLTTAQEVAEELNIDHPMVIWYLK 429 4667***********************99 PP >> Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 1.9e-05 0.15 102 156 .. 348 402 .. 342 415 .. 0.90 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.9e-05 Chal_sti_synt_N 102 lgkeaalkalkewGrPkskithlvfvsssevelPGadlklakklGlrpsvkrvml 156 ++ ++++ ++k w +P++ thl ++++ G+ ++k +G++++ rv++ T093086_3 348 FSYSSSRWVIKRWRQPATSTTHLAQELLTNLQCSGGSRSFSKDMGVDNDKLRVII 402 566778899****************************************999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 3814.44 // Query: T153795_1 [L=4541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.56 # Mc/sec: 22791.28 // Query: T153795_2 [L=4540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.57 # Mc/sec: 22393.39 // Query: T153795_3 [L=4540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 22786.26 // Query: T051450_1 [L=3474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 17747.36 // Query: T051450_2 [L=3473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 17130.45 // Query: T051450_3 [L=3473] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3473 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 17430.99 // Query: T125535_1 [L=3876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 542 (0.0332393); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.33s 00:00:01.57 Elapsed: 00:00:00.59 # Mc/sec: 18794.20 // Query: T125535_2 [L=3876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 19453.64 // Query: T125535_3 [L=3875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.57 # Mc/sec: 19113.30 // Query: T171424_1 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46 # Mc/sec: 3569.82 // Query: T171424_2 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 3493.86 // Query: T171424_3 [L=574] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (574 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 413 (0.0253281); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3284.23 // Query: T096586_1 [L=1077] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1077 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 6287.99 // Query: T096586_2 [L=1076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6156.51 // Query: T096586_3 [L=1076] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1076 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 6282.15 // Query: T052060_1 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 9.4 5.7 10.1 3.6 7.1 7.3 1.7 2 CaKB Calcium-activated potassium channel, beta subunit Domain annotation for each model (and alignments): >> CaKB Calcium-activated potassium channel, beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 7.3 0.00022 3.6 59 150 .. 41 132 .. 8 153 .. 0.77 2 ? -2.5 0.0 0.19 3e+03 51 89 .. 183 222 .. 161 237 .. 0.66 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00022 CaKB 59 vdcsfscgsdcrgvskypcLqvlvnlsssgkkalLhhdeetvelnskCfYiPkcqkdkkeleeevenikeklkkqkeqtfsCyydpsekped 150 c++ +++ + ++ pc +++ ++++++++ ++h++ ++++ C Yi ++++++++++++ ++ + + +q+++ ++ ++++ T052060_1 41 APCTHIYTAHIHTHTHAPCTHIYTQTTHTTHRGTMHVHTPQTHICAPCTYIYTHHTQRHHVHTHHKHTYTHTPYTYTQHTHTTNTQHAHNTH 132 56888889999999***************************************999999998887766555444444444444444444444 PP == domain 2 score: -2.5 bits; conditional E-value: 0.19 CaKB 51 kveileevvdcsfscgsdcrgvsky.pcLqvlvnlsssgk 89 +++i ++ ++ +++ ++++ +y pc q+ +++++++ T052060_1 183 HIHIYHTHMHHAHTYRQHTHTHHRYaPCSQMHIHTTHTTY 222 5555666666666666666666665578777777777654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 980 (0.0601006); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 3416.80 // Query: T052060_2 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 808 (0.0495523); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 3621.81 // Query: T052060_3 [L=633] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (633 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1232 (0.075555); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 3122.25 // Query: T236260_1 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 14180.44 // Query: T236260_2 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.68 # Mc/sec: 15431.65 // Query: T236260_3 [L=3668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3668 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 14779.61 // Query: T315126_1 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.18 11.9 0.0 0.33 11.1 0.0 1.3 1 PH_6 Pleckstrin homology domain Domain annotation for each model (and alignments): >> PH_6 Pleckstrin homology domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 2e-05 0.33 21 54 .. 105 138 .. 99 141 .. 0.81 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2e-05 PH_6 21 lsellksekaaesaedaheviawAsetGkGLLff 54 + +++++k+ ++++ ++ iaw + G+GLLf T315126_1 105 HNLEEEGDKQLQNSKRSENQIAWCHKVGDGLLFM 138 4444556889999999****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.70 # Mc/sec: 8598.84 // Query: T315126_2 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 8356.01 // Query: T315126_3 [L=2103] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2103 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.78 # Mc/sec: 7713.24 // Query: T100217_1 [L=3229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.68 # Mc/sec: 13584.74 // Query: T100217_2 [L=3229] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3229 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.77 # Mc/sec: 11996.91 // Query: T100217_3 [L=3228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-06 28.3 0.6 1.9 8.7 0.0 4.4 4 Gallidermin Gallidermin Domain annotation for each model (and alignments): >> Gallidermin Gallidermin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.7 0.0 0.00012 1.9 22 43 .. 181 202 .. 175 205 .. 0.85 2 ! 2.8 0.0 0.0084 1.4e+02 23 42 .. 563 582 .. 557 585 .. 0.84 3 ! 8.7 0.0 0.00012 1.9 22 43 .. 1221 1242 .. 1215 1245 .. 0.85 4 ? 2.1 0.0 0.014 2.2e+02 21 43 .. 2032 2054 .. 2029 2056 .. 0.87 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00012 XXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 22 sndsgaepRiaSkflCtPGCAk 43 + + +e R+ S+ lC PG Ak T100217_3 181 AGQAHSEQRVSSWGLCMPGKAK 202 5566789************998 PP == domain 2 score: 2.8 bits; conditional E-value: 0.0084 XXXXXXXXXXXXXXXXXXXX CS Gallidermin 23 ndsgaepRiaSkflCtPGCA 42 + +e R+ + lC PG A T100217_3 563 GQAHSEQRVSRWGLCMPGKA 582 566789************87 PP == domain 3 score: 8.7 bits; conditional E-value: 0.00012 XXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 22 sndsgaepRiaSkflCtPGCAk 43 + + +e R+ S+ lC PG Ak T100217_3 1221 AGQAHSEQRVSSWGLCMPGKAK 1242 5566789************998 PP == domain 4 score: 2.1 bits; conditional E-value: 0.014 XXXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 21 esndsgaepRiaSkflCtPGCAk 43 +s +s++e + + lC PG Ak T100217_3 2032 KSGQSQSEQHVGPWGLCMPGKAK 2054 5778999999**********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3228 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 12650.36 // Query: T183050_1 [L=3466] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3466 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 15023.69 // Query: T183050_2 [L=3465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.66 # Mc/sec: 15019.36 // Query: T183050_3 [L=3465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.9 0.2 14 5.9 0.0 2.7 2 DUF2484 Protein of unknown function (DUF2484) Domain annotation for each model (and alignments): >> DUF2484 Protein of unknown function (DUF2484) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.0016 26 9 27 .. 176 194 .. 170 206 .. 0.76 2 ? 5.9 0.0 0.00088 14 6 28 .. 259 281 .. 255 292 .. 0.76 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0016 DUF2484 9 vlWvlvAavvallplRwhw 27 W++v++ ++++p++w T183050_3 176 GFWIMVSTGIPVVPSHWES 194 57**************975 PP == domain 2 score: 5.9 bits; conditional E-value: 0.00088 DUF2484 6 llavlWvlvAavvallplRwhws 28 ++ v W+ v++ ++++p++w T183050_3 259 TACVFWITVSTGIPVVPSHWESM 281 67789**************9754 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3465 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.30s 00:00:01.49 Elapsed: 00:00:00.61 # Mc/sec: 16250.45 // Query: T337640_1 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.39s 00:00:01.58 Elapsed: 00:00:00.72 # Mc/sec: 10891.02 // Query: T337640_2 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 616 (0.0377775); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 11044.42 // Query: T337640_3 [L=2741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.053 13.5 0.1 0.15 12.0 0.1 1.7 1 DUF4632 Domain of unknown function (DUF4632) Domain annotation for each model (and alignments): >> DUF4632 Domain of unknown function (DUF4632) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 9.1e-06 0.15 24 62 .. 1248 1286 .. 1230 1291 .. 0.75 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 9.1e-06 DUF4632 24 gagPrsaGWralrrlwdrvlaParrlrrPlPsnvlyCpe 62 g +P sa + + + a r+rrPl s v +C+e T337640_3 1248 GCEPLSASDVKVWKTSGCECHAAERWRRPLRSEVTWCAE 1286 56666666666666666667789**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.67 # Mc/sec: 11703.78 // Query: T099956_1 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 5805.80 // Query: T099956_2 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.63 # Mc/sec: 6266.58 // Query: T099956_3 [L=1380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 6926.22 // Query: T229245_1 [L=2289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.027 14.5 0.3 0.027 14.5 0.3 2.0 2 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.3 1.7e-06 0.027 4 29 .. 866 891 .. 865 894 .. 0.92 2 ? -4.0 0.7 0.94 1.5e+04 3 11 .. 1827 1835 .. 1826 1837 .. 0.83 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.7e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229245_1 866 VWGASCPAPHNPCRLQLELCGPCQKR 891 5**********************976 PP == domain 2 score: -4.0 bits; conditional E-value: 0.94 Toxin_13 3 atwGaayPa 11 atwGa P+ T229245_1 1827 ATWGAGCPS 1835 8****9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 9921.88 // Query: T229245_2 [L=2288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 10909.30 // Query: T229245_3 [L=2288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.68 # Mc/sec: 9625.85 // Query: T099093_1 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.56 # Mc/sec: 2971.25 // Query: T099093_2 [L=591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2727.02 // Query: T099093_3 [L=591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 2817.92 // Query: T353452_1 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1462 (0.0896602); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 145 (0.00889243); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.39s 00:00:02.53 Elapsed: 00:00:00.77 # Mc/sec: 9399.87 // Query: T353452_2 [L=2530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1168 (0.0716301); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:00.73 # Mc/sec: 9914.93 // Query: T353452_3 [L=2529] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2529 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1290 (0.079112); expected 326.1 (0.02) Passed bias filter: 305 (0.0187048); expected 326.1 (0.02) Passed Vit filter: 64 (0.00392494); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.34s 00:00:02.10 Elapsed: 00:00:00.74 # Mc/sec: 9777.08 // Query: T051026_1 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.65 # Mc/sec: 1258.77 // Query: T051026_2 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.64 # Mc/sec: 1278.43 // Query: T051026_3 [L=285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 1294.18 // Query: T277637_1 [L=731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 31 (0.00190114); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 3373.01 // Query: T277637_2 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 3314.93 // Query: T277637_3 [L=730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 3423.62 // Query: T183172_1 [L=9992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1200 (0.0735925); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.54u 0.59s 00:00:06.13 Elapsed: 00:00:01.26 # Mc/sec: 22686.84 // Query: T183172_2 [L=9991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1295 (0.0794186); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.44u 0.64s 00:00:06.08 Elapsed: 00:00:01.12 # Mc/sec: 25294.29 // Query: T183172_3 [L=9991] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9991 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1383 (0.0848154); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.96u 0.54s 00:00:06.50 Elapsed: 00:00:01.29 # Mc/sec: 22157.02 // Query: T230011_1 [L=916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-27 94.7 8.0 6.1e-27 94.0 8.0 1.3 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.0 8.0 3.8e-31 6.1e-27 51 121 .] 99 169 .. 87 169 .. 0.95 Alignments for each domain: == domain 1 score: 94.0 bits; conditional E-value: 3.8e-31 TMEM191C 51 galrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T230011_1 99 SPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 169 5689******************************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 4159.56 // Query: T230011_2 [L=916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-12 47.0 0.1 4.5e-12 46.0 0.1 1.4 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.0 0.1 2.8e-16 4.5e-12 16 53 .. 59 96 .. 57 103 .. 0.93 Alignments for each domain: == domain 1 score: 46.0 bits; conditional E-value: 2.8e-16 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagal 53 cd+qlr vq++++slmee+arad+e+rlfgg++a a+ T230011_2 59 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAI 96 59********************************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.60 # Mc/sec: 4367.53 // Query: T230011_3 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 3966.15 // Query: T177939_1 [L=4781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.37s 00:00:02.23 Elapsed: 00:00:00.77 # Mc/sec: 17763.15 // Query: T177939_2 [L=4780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.39s 00:00:01.99 Elapsed: 00:00:00.78 # Mc/sec: 17531.75 // Query: T177939_3 [L=4780] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4780 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:00.75 # Mc/sec: 18233.02 // Query: T012274_1 [L=7980] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7980 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.37s 00:00:02.66 Elapsed: 00:00:00.86 # Mc/sec: 26545.84 // Query: T012274_2 [L=7979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.9 5.3 8.5 9.6 4.8 8.5 1.1 1 DUF812 Protein of unknown function (DUF812) Domain annotation for each model (and alignments): >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 8.5 0.00059 9.6 320 406 .. 7643 7734 .. 7626 7749 .. 0.91 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.00059 DUF812 320 kteteeelrkkreeeleelqekleeleskieeleeelkklessikqieeeleeekeeneel.....ekelklkkktlellpdaeeniekLqa 406 ++e+el +++e e ++l++++e+++s++ee + +lk+ +i eee+ +kee+ee+ + lkkk e+lp +++ ++L + T012274_2 7643 GLKEEKELSQPKEGEATDLKKEVEKISSSEEEETVNLKEEVEKIPPPEEETMDLKEEKEEIpppevREATGLKKKQEEILPPEDGEAAALSS 7734 5689*********************************************************99999999***********999999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.53u 0.39s 00:00:02.92 Elapsed: 00:00:00.78 # Mc/sec: 29264.82 // Query: T012274_3 [L=7979] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7979 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.13u 0.37s 00:00:02.50 Elapsed: 00:00:00.77 # Mc/sec: 29644.89 // Query: T012473_1 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-07 28.8 3.0 2e-06 27.4 0.0 2.4 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.2 0.012 2e+02 8 61 .. 160 222 .. 155 231 .. 0.77 2 ! 27.4 0.0 1.2e-10 2e-06 158 222 .] 326 412 .. 301 412 .. 0.82 3 ? -3.5 0.0 0.34 5.5e+03 10 27 .. 1056 1073 .. 1055 1074 .. 0.89 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.012 -EEE......-THHHHCTB-..-.........-------HHHH.................... CS RVT_1 8 syRpisllsvdykalnklia..krLkdvlekllsenqpgfrpgrstldav.......eellka 61 s Rp+ ++++++ + + ++ krL +++++ll+ +q +++ s l+ + ++++k+ T012473_1 160 SSRPLTCINWQVYRITRKTK*nKRLYPCAKNLLPAHQKTYPSRSSWLHPWdaklaqhMQINKH 222 7799999999988888888555********************999988887555444444444 PP == domain 2 score: 27.4 bits; conditional E-value: 1.2e-10 .........TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 158 a.....kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 + + v+l+++aD ++++ +++ q+ll+ v+++ k sg+kin K++++l+ ++ ++++kyLG++l T012473_1 326 HiligrERVKLSLFADNMIVYLENPIIsPQKLLKLVSNFSKVSGYKINVLKSQAFLYtnnrqagsqimNEvpftiATKRIKYLGIQL 412 256666789***************5555***************************99999988877762256678*********986 PP == domain 3 score: -3.5 bits; conditional E-value: 0.34 EE......-THHHHCTB- CS RVT_1 10 Rpisllsvdykalnklia 27 R++ ll++ +++lnkl++ T012473_1 1056 RTLTLLCTSFRILNKLLH 1073 89999**********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.55 # Mc/sec: 6741.16 // Query: T012473_2 [L=1296] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-07 29.8 0.1 5.8e-07 29.1 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.1 3.6e-11 5.8e-07 31 90 .. 192 255 .. 180 257 .. 0.85 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 3.6e-11 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 ++++kl++++q gf pg + + ++ + ++++++ k k+++++++D +kaFd++++++ l+ T012473_2 192 YPHIKKLIHHDQAGFIPGMQSWLSIcksiNIIRHINRTKDKNHMVISVDAEKAFDKIQHPFMLK 255 3577889***********888888899989999999999999*****************99887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1296 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 6504.62 // Query: T012473_3 [L=1295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-07 28.5 0.2 1.5e-06 27.5 0.2 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.2 9.4e-11 1.5e-06 1 19 [] 879 897 .. 879 897 .. 0.98 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 9.4e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag WM+LE IILS+ sQ T012473_3 879 PFAGSWMKLEAIILSKLSQ 897 8*****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1295 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.60 # Mc/sec: 6174.62 // Query: T212550_1 [L=2182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.76 # Mc/sec: 8213.59 // Query: T212550_2 [L=2182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 11147.02 // Query: T212550_3 [L=2182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 9316.91 // Query: T292094_1 [L=2280] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2280 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 12306.97 // Query: T292094_2 [L=2279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.53 # Mc/sec: 12301.57 // Query: T292094_3 [L=2279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-43 147.0 2.3 7.6e-43 146.4 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.4 2.3 4.7e-47 7.6e-43 1 210 [. 1563 1791 .. 1563 1807 .. 0.94 Alignments for each domain: == domain 1 score: 146.4 bits; conditional E-value: 4.7e-47 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl++++ k+lnk++a + ++++kl++++q+gf p + + ++ +++++++++k k+++++++D +ka d+++ + T292094_3 1563 IPKPGrdttkKENFRPISLMNINAKILNKILAk*iQ---QHVKKLIHHDQVGFIPAMQDWFNIcksiNVIQHINRAKDKNHMIISIDAEKASDKIQQP 1657 899999999999******************964434...79999************9999999***99****************************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l++f+++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T292094_3 1658 FMLKTLNKFGIDGMYLKIVRAIYDKPTANIILNGQTLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQKKeikgiqlgkEEVKLSLFADDMIVYLE 1755 ***********************************99*********************************99************************** PP S.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 176 s.keelqelleaveewlkesglkinpeKtklvlfsg 210 + ++q+ll+ ++++ k sg+kin eK++++l+++ T292094_3 1756 NpIVSAQNLLKLISNFSKVSGYKINVEKSRAFLYTN 1791 *6677**************************98733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11854.24 // Query: T184306_1 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 692 (0.0424384); expected 326.1 (0.02) Passed bias filter: 330 (0.0202379); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 7044.12 // Query: T184306_2 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 899 (0.0551331); expected 326.1 (0.02) Passed bias filter: 440 (0.0269839); expected 326.1 (0.02) Passed Vit filter: 102 (0.00625537); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 6666.76 // Query: T184306_3 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1255 (0.0769655); expected 326.1 (0.02) Passed bias filter: 560 (0.0343432); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.55 # Mc/sec: 6787.97 // Query: T069991_1 [L=2273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.8 6.4 81.0 4 5.9 81.0 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 81.0 0.00025 4 115 238 .. 802 926 .. 796 964 .. 0.61 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.00025 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 115 kkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdr.ekekererekaserekkekkkkdsknkkkdkekekkkekssksesgkeee 213 kkk+++++++ + +++ k++k++ee +e rr + ++++kek+k++e+ r + +++e+ek++e+ekk+kkkk++k+kkk+k+k+kkk+k++++ ++eee T069991_1 802 KKKKKRRRRRGRGRRRRKKKKKEEEEEEGRRRRRRRRKKEKEKEEEEGRrRRRRKKEKEKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKRRRREEEEE 901 5666677777777777777777777788888777777777776655443034444455555555555554433333333334444444444444444444 PP XXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 214 rskdeerekeadkgkdretnratee 238 ++++ee+e+e++k+k++e+++++++ T069991_1 902 EEEEEEEEEEEKKEKEKEKEKKKKK 926 4444444455555555555533333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2537 (0.155587); expected 326.1 (0.02) Passed bias filter: 860 (0.0527413); expected 326.1 (0.02) Passed Vit filter: 616 (0.0377775); expected 16.3 (0.001) Passed Fwd filter: 143 (0.00876978); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.84u 0.46s 00:00:04.30 Elapsed: 00:00:00.87 # Mc/sec: 7474.33 // Query: T069991_2 [L=2273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1570 (0.0962836); expected 326.1 (0.02) Passed bias filter: 484 (0.0296823); expected 326.1 (0.02) Passed Vit filter: 275 (0.016865); expected 16.3 (0.001) Passed Fwd filter: 76 (0.00466086); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.28u 0.42s 00:00:02.70 Elapsed: 00:00:00.69 # Mc/sec: 9424.15 // Query: T069991_3 [L=2272] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2272 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1540 (0.0944438); expected 326.1 (0.02) Passed bias filter: 583 (0.0357537); expected 326.1 (0.02) Passed Vit filter: 321 (0.019686); expected 16.3 (0.001) Passed Fwd filter: 97 (0.00594873); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.58u 0.48s 00:00:03.06 Elapsed: 00:00:00.77 # Mc/sec: 8441.31 // Query: T222014_1 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 13175.42 // Query: T222014_2 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 499 (0.0306022); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 13672.61 // Query: T222014_3 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 13175.42 // Query: T369085_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 478 (0.0293144); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 9944.03 // Query: T369085_2 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 9938.74 // Query: T369085_3 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 9938.74 // Query: T074292_1 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 7300.62 // Query: T074292_2 [L=1327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7162.87 // Query: T074292_3 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7295.12 // Query: T071073_1 [L=1083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1083 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 5958.23 // Query: T071073_2 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 5952.73 // Query: T071073_3 [L=1082] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1082 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 6190.84 // Query: T275132_1 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1996.74 // Query: T275132_2 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1956.81 // Query: T275132_3 [L=342] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (342 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.67 # Mc/sec: 1460.30 // Query: T379418_1 [L=915] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (915 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.63 # Mc/sec: 4155.02 // Query: T379418_2 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.4 0.0 0.066 12.9 0.0 1.7 2 Homeobox Homeobox domain Domain annotation for each model (and alignments): >> Homeobox Homeobox domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.51 8.3e+03 23 38 .. 428 443 .. 427 443 .. 0.87 2 ? 12.9 0.0 4e-06 0.066 6 45 .. 626 665 .. 625 666 .. 0.94 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.51 SS-SHHHHHHHHHHHT CS Homeobox 23 rypsaeereeLAkklg 38 + p++e++ +L++ lg T379418_2 428 PRPDHERIPDLTATLG 443 689********99885 PP == domain 2 score: 12.9 bits; conditional E-value: 4e-06 SS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHH CS Homeobox 6 tftkeqleeLeelFeenrypsaeereeLAkklgLeerqVk 45 +f++ l+eL + F ++ y++ +r++LA ++++e+ V T379418_2 626 AFSRLHLKELDSIFPRSEYLDVFARKQLAICMDVSEAEVE 665 588899******************************9995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 4431.86 // Query: T379418_3 [L=914] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (914 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.65 # Mc/sec: 4022.77 // Query: T089782_1 [L=4918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.39s 00:00:01.90 Elapsed: 00:00:00.67 # Mc/sec: 20999.35 // Query: T089782_2 [L=4918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.32s 00:00:01.93 Elapsed: 00:00:00.66 # Mc/sec: 21317.52 // Query: T089782_3 [L=4918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:00.72 # Mc/sec: 19541.06 // Query: T070825_1 [L=3287] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3287 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 13060.48 // Query: T070825_2 [L=3286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.69 # Mc/sec: 13624.18 // Query: T070825_3 [L=3286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.69 # Mc/sec: 13624.18 // Query: T227542_1 [L=5677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.66 # Mc/sec: 24607.47 // Query: T227542_2 [L=5677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.43s 00:00:02.11 Elapsed: 00:00:00.78 # Mc/sec: 20821.71 // Query: T227542_3 [L=5677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5677 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.35s 00:00:02.18 Elapsed: 00:00:00.85 # Mc/sec: 19106.98 // Query: T369306_1 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 5695.25 // Query: T369306_2 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.76 # Mc/sec: 4867.18 // Query: T369306_3 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.71 # Mc/sec: 5209.93 // Query: T313526_1 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1802 (0.110511); expected 326.1 (0.02) Passed bias filter: 399 (0.0244695); expected 326.1 (0.02) Passed Vit filter: 235 (0.0144119); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.68u 0.47s 00:00:03.15 Elapsed: 00:00:00.88 # Mc/sec: 4310.75 // Query: T313526_2 [L=1326] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1326 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1678 (0.102907); expected 326.1 (0.02) Passed bias filter: 355 (0.0217711); expected 326.1 (0.02) Passed Vit filter: 150 (0.00919907); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.46s 00:00:02.27 Elapsed: 00:00:00.86 # Mc/sec: 4411.00 // Query: T313526_3 [L=1325] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1325 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1394 (0.08549); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 80 (0.00490617); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.66 # Mc/sec: 5743.33 // Query: T276199_1 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.66 # Mc/sec: 9185.00 // Query: T276199_2 [L=2119] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2119 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.28s 00:00:01.41 Elapsed: 00:00:00.72 # Mc/sec: 8419.58 // Query: T276199_3 [L=2118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 8300.33 // Query: T006196_1 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 6326.52 // Query: T006196_2 [L=1548] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1548 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 7142.85 // Query: T006196_3 [L=1547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1547 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:00.77 # Mc/sec: 5747.67 // Query: T065758_1 [L=3834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.34s 00:00:01.93 Elapsed: 00:00:00.75 # Mc/sec: 14624.56 // Query: T065758_2 [L=3833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.35s 00:00:01.73 Elapsed: 00:00:00.71 # Mc/sec: 15444.45 // Query: T065758_3 [L=3833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.35s 00:00:01.69 Elapsed: 00:00:00.63 # Mc/sec: 17405.65 // Query: T357966_1 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1060 (0.0650067); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 4820.23 // Query: T357966_2 [L=893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 970 (0.0594873); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 3548.22 // Query: T357966_3 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1373 (0.0842021); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.69 # Mc/sec: 3698.35 // Query: T210448_1 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1247 (0.0764749); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.66 # Mc/sec: 2652.77 // Query: T210448_2 [L=612] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (612 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 956 (0.0586287); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.66 # Mc/sec: 2652.77 // Query: T210448_3 [L=611] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (611 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 729 (0.0447075); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 3298.05 // Query: T188410_1 [L=3564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.77 # Mc/sec: 13241.56 // Query: T188410_2 [L=3564] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.6 5.6 6.9 6.6 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 5.6 0.00042 6.9 66 103 .. 364 401 .. 361 422 .. 0.62 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00042 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188410_2 364 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 401 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3564 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 972 (0.05961); expected 326.1 (0.02) Passed bias filter: 440 (0.0269839); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.72 # Mc/sec: 14161.11 // Query: T188410_3 [L=3563] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3563 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 946 (0.0580155); expected 326.1 (0.02) Passed bias filter: 365 (0.0223844); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.84 # Mc/sec: 12134.69 // Query: T277144_1 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.69 # Mc/sec: 7375.97 // Query: T277144_2 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 8078.44 // Query: T277144_3 [L=1779] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1779 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 9424.85 // Query: T128943_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 1953.07 // Query: T128943_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.60 # Mc/sec: 1692.66 // Query: T128943_3 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.56 # Mc/sec: 1776.73 // Query: T248997_1 [L=3387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-07 30.6 0.6 1.4e-06 28.3 0.0 2.4 2 V-set Immunoglobulin V-set domain 0.0062 16.4 0.1 0.11 12.4 0.0 2.8 2 I-set Immunoglobulin I-set domain ------ inclusion threshold ------ 0.019 15.0 0.9 0.18 11.9 0.1 2.6 2 ig Immunoglobulin domain Domain annotation for each model (and alignments): >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.1 1.8 1e+04 15 33 .. 1079 1094 .. 1075 1097 .. 0.80 2 ! 28.3 0.0 2.6e-10 1.4e-06 5 108 .. 1324 1453 .. 1320 1454 .. 0.83 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 1.8 EEEEEESSSSCCTCSEEEE CS V-set 15 tLsCtlssseseeslsiyW 33 +LsC++++s +++s++ T248997_1 1079 KLSCKYNTS---AFYSMSL 1094 79*****99...8888765 PP == domain 2 score: 28.3 bits; conditional E-value: 2.6e-10 EEEEETTSEEEEEEEESSSSCCTCSEEEEEEEETTS.......CEEEEEEEETT...................TEEEEESTTTEEEEE.ETTTTEEEE CS V-set 5 svtvaeGesvtLsCtlssseseeslsiyWyrqppgk.......epeelilyysn...................sskegkkkgrfslrg.dpsrsdfsL 75 ++++ + ++vtLsC++s + +e+l+++W r++ ++ ++ +l++ y + +++++ +gr+s+ + +s++++sL T248997_1 1324 ELRAHPFTDVTLSCHFSFVKGTENLEFSWEREDIKQayevednKEYYLLFKYLDffevfsklvyqfhnnteqlEDQNSLYEGRVSVDQaEISEGTLSL 1421 5666777899****999447889999999999988788888886667777777688888888888888***988888888****************** PP EESSESGGG-EEEEEEEESSSEEEEEEEEEEEE CS V-set 76 tiqnlqlsDsGtYfCavvssgegvfgsgtrLtV 108 ++n+ D+++Y C+ ++ g+ +s+++L V T248997_1 1422 LLRNVDFMDEAIYKCS-AITPDGRGESTIKLIV 1453 ****************.6777777777777776 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.0 2.1e-05 0.11 24 90 .] 1342 1453 .. 1317 1453 .. 0.71 2 ? -0.8 0.0 0.28 1.5e+03 29 76 .. 1797 1848 .. 1796 1855 .. 0.81 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.1e-05 EECSSS-EEEEEETTCB-ST..........................................SSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 24 veGepepsvsWakdgselks..........................................sqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 v+G++++++sW +++ + + + rv+v++ e ++ +L ++nv+ De +Y+c a T248997_1 1342 VKGTENLEFSWEREDIKQAYevednkeyyllfkyldffevfsklvyqfhnnteqledqnslyEGRVSVDQAEiseGTLSLLLRNVDFMDEAIYKCSAI 1439 556666666666653333333455666666666666666666666666666666666777777888888888888999******************** PP ETSEEEEEEEEEEE CS I-set 77 nsagkaeakaeLkV 90 g+ e++++L V T248997_1 1440 TPDGRGESTIKLIV 1453 *****999999987 PP == domain 2 score: -0.8 bits; conditional E-value: 0.28 S-EEEEEET.TCB-STSSSEEEEEET...TEEEEEESSB-GGGGEEEEEEEE CS I-set 29 epsvsWakd.gselkssqrvkvtvee...aeytLtIsnvevsDeGkYtckat 76 +p v+W+ + +++l++ + v++ +e+ + I + v+ + kY c +t T248997_1 1797 TPIVTWLDRtERDLSNHSIVEILEEQmngFYRVFSILKYPVKLNEKYLCHIT 1848 589******9******999999999876556678888888888888888776 PP >> ig Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 3.3e-05 0.18 8 84 .. 1327 1448 .. 1320 1451 .. 0.78 2 ? -3.6 0.1 2.2 1.2e+04 67 75 .. 2265 2273 .. 2263 2273 .. 0.75 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 3.3e-05 EETTS-EEEEEEEE..SSCCTSEEEEEESSCSSSEEEE...........................................EEEEETTCEEEEEEEES CS ig 8 vleGesatLtCsvs..tqtkptdvtWkkegqtkiesqk...........................................vvkegnrrkgsssllis 60 +++ + +tL+C+ s +t++++++W++e+ + + +v + + +g+ sll++ T248997_1 1327 AHPFTDVTLSCHFSfvKGTENLEFSWEREDIKQAYEVEdnkeyyllfkyldffevfsklvyqfhnnteqledqnslyegrvSVDQAEISEGTLSLLLR 1424 5556789*********************98544444444569999999999999999998888777777777777777766666666666777***** PP SSTGGG-EEEEEEEEETTEEEEEE CS ig 61 kvteedaGtYtCevnnsgssvtls 84 +v d+ Y C + ++++ +++ T248997_1 1425 NVDFMDEAIYKCSAITPDGRGEST 1448 ************999999877765 PP == domain 2 score: -3.6 bits; conditional E-value: 2.2 -EEEEEEEE CS ig 67 aGtYtCevn 75 + +YtC+v+ T248997_1 2265 GDEYTCTVS 2273 449***996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.38u 0.37s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 13647.37 // Query: T248997_2 [L=3387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.67 # Mc/sec: 14462.14 // Query: T248997_3 [L=3387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.74 # Mc/sec: 13094.10 // Query: T111288_1 [L=4402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.32s 00:00:01.64 Elapsed: 00:00:00.59 # Mc/sec: 21344.70 // Query: T111288_2 [L=4402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.24s 00:00:01.41 Elapsed: 00:00:00.55 # Mc/sec: 22897.04 // Query: T111288_3 [L=4401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 22088.62 // Query: T124751_1 [L=184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.45 # Mc/sec: 1169.76 // Query: T124751_2 [L=184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.7 0.2 0.022 14.7 0.2 1.6 2 TMEM247 Transmembrane protein 247 Domain annotation for each model (and alignments): >> TMEM247 Transmembrane protein 247 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.2 1.3e-06 0.022 129 161 .. 23 56 .. 18 63 .. 0.84 2 ? -1.5 0.2 0.12 2e+03 110 132 .. 105 127 .. 79 133 .. 0.72 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.3e-06 TMEM247 129 rqheevm.eqlqqqalprlfsGglqdlllpqnqf 161 r h evm +q+q+ l f+G+ qdlllpq q T124751_2 23 RLHLEVMwHQVQHCLLQGSFTGSCQDLLLPQSQP 56 6788888568888889999************995 PP == domain 2 score: -1.5 bits; conditional E-value: 0.12 TMEM247 110 rmefeltrlkylheenerqrqhe 132 +e l l y+ e e+ r+ + T124751_2 105 EVEQSLGNLEYVQEPGEKHRRQD 127 45667889999999888877654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.46 # Mc/sec: 1144.33 // Query: T124751_3 [L=184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0024 16.6 0.1 0.0031 16.2 0.1 1.0 1 Tektin Tektin family Domain annotation for each model (and alignments): >> Tektin Tektin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.1 1.9e-07 0.0031 356 377 .. 118 139 .. 114 141 .. 0.91 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.9e-07 Tektin 356 eleediavKanslfiDeekcle 377 +le++iavK+nsl++D++ c+ T124751_3 118 SLEKNIAVKTNSLYVDRQACMA 139 79******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.48 # Mc/sec: 1096.65 // Query: T208524_1 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-08 32.4 0.6 6e-08 32.4 0.6 3.7 5 zf-RING_UBOX RING-type zinc-finger 3.1e-07 30.1 3.8 3.1e-07 30.1 3.8 3.5 3 zf-RING_5 zinc-RING finger domain 4.4e-05 23.4 0.5 4.4e-05 23.4 0.5 3.6 4 zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.00035 20.2 1.4 0.00035 20.2 1.4 3.2 5 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.00038 20.5 8.8 0.00038 20.5 8.8 3.9 2 zf-RING_2 Ring finger domain 0.00068 19.3 1.9 0.00068 19.3 1.9 3.3 3 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) Domain annotation for each model (and alignments): >> zf-RING_UBOX RING-type zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.6 2.2e-11 6e-08 1 26 [. 285 315 .. 285 324 .. 0.83 2 ? -2.3 0.3 1.6 4.3e+03 1 6 [. 348 353 .. 348 359 .. 0.79 3 ? -2.6 0.3 2 5.3e+03 5 18 .. 686 694 .. 682 695 .. 0.62 4 ? -1.9 0.1 1.2 3.3e+03 18 27 .. 821 829 .. 821 834 .. 0.63 5 ? -8.9 5.0 6 1.6e+04 14 20 .. 1031 1037 .. 1025 1037 .. 0.76 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 2.2e-11 zf-RING_UBOX 1 CpIClelft....dP.llpCGHtFCreClwe 26 C IC++ f+ P ll C HtFC+eCl + T208524_1 285 CKICYNYFDadrrAPkLLACLHTFCQECLSQ 315 ***********99994469**********52 PP == domain 2 score: -2.3 bits; conditional E-value: 1.6 zf-RING_UBOX 1 CpICle 6 Cp+C+ T208524_1 348 CPVCRH 353 ****86 PP == domain 3 score: -2.6 bits; conditional E-value: 2 zf-RING_UBOX 5 lelftdPllpCGHt 18 lel+ +C+Ht T208524_1 686 LELL-----KCSHT 694 4444.....7***9 PP == domain 4 score: -1.9 bits; conditional E-value: 1.2 zf-RING_UBOX 18 tFCreClwel 27 ++C Cl+ + T208524_1 821 VLCLHCLN-N 829 57999994.2 PP == domain 5 score: -8.9 bits; conditional E-value: 6 zf-RING_UBOX 14 pCGHtFC 20 +C H+ C T208524_1 1031 GCNHCTC 1037 5889888 PP >> zf-RING_5 zinc-RING finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 3.8 1.1e-10 3.1e-07 1 43 [. 284 352 .. 284 353 .. 0.94 2 ? -2.0 0.2 1.2 3.3e+03 23 33 .. 821 831 .. 821 834 .. 0.79 3 ? -9.9 9.4 6 1.6e+04 16 26 .. 1028 1038 .. 1021 1046 .. 0.77 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 1.1e-10 zf-RING_5 1 hCnkCfekl.skeekfyltsCgHifCekClkklk.........................ekeavCpiCr 43 +C++C++ + +++++ l++C H+fC++Cl++l+ Cp+Cr T208524_1 284 ECKICYNYFdADRRAPKLLACLHTFCQECLSQLQlraaaaaaaaaaperpprpppwlcpPGAIACPVCR 352 6********999999**********************99999999999999999999999999999998 PP == domain 2 score: -2.0 bits; conditional E-value: 1.2 zf-RING_5 23 ifCekClkklk 33 ++C +Cl+++ T208524_1 821 VLCLHCLNNKN 831 58999999986 PP == domain 3 score: -9.9 bits; conditional E-value: 6 zf-RING_5 16 yltsCgHifCe 26 +l C H C T208524_1 1028 WLCGCNHCTCV 1038 67777777774 PP >> zf-C3HC4_4 zinc finger of C3HC4-type, RING # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.5 1.6e-08 4.4e-05 1 34 [. 285 322 .. 285 327 .. 0.85 2 ? -4.5 1.2 6 1.6e+04 1 4 [. 348 351 .. 347 352 .. 0.80 3 ? -2.5 0.1 2 5.5e+03 20 27 .. 822 829 .. 821 833 .. 0.77 4 ? -5.0 4.7 6 1.6e+04 16 25 .. 1030 1038 .. 1026 1042 .. 0.78 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 1.6e-08 zf-C3HC4_4 1 CPiCldYLe....kPvsleCGhsfClsCisslqkepdg 34 C iC +Y+ P l+C h+fC++C+s+lq +++ T208524_1 285 CKICYNYFDadrrAPKLLACLHTFCQECLSQLQLRAAA 322 ********633336******************987765 PP == domain 2 score: -4.5 bits; conditional E-value: 6 zf-C3HC4_4 1 CPiC 4 CP+C T208524_1 348 CPVC 351 8888 PP == domain 3 score: -2.5 bits; conditional E-value: 2 zf-C3HC4_4 20 fClsCiss 27 Cl+C+++ T208524_1 822 LCLHCLNN 829 69999987 PP == domain 4 score: -5.0 bits; conditional E-value: 6 zf-C3HC4_4 16 CGhsfClsCi 25 CG++ C C+ T208524_1 1030 CGCNHCT-CV 1038 9999994.55 PP >> zf-C3HC4 Zinc finger, C3HC4 type (RING finger) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.2 1.4 1.3e-07 0.00035 1 30 [. 285 317 .. 285 324 .. 0.91 2 ? -4.9 0.7 6 1.6e+04 38 41 .] 348 351 .. 346 352 .. 0.69 3 ? -3.6 0.0 3.5 9.6e+03 13 20 .. 687 694 .. 683 695 .. 0.82 4 ? -3.4 0.4 3.1 8.5e+03 22 26 .. 732 736 .. 729 737 .. 0.76 5 ? -7.7 4.4 6 1.6e+04 17 22 .. 1032 1037 .. 1025 1040 .. 0.71 Alignments for each domain: == domain 1 score: 20.2 bits; conditional E-value: 1.3e-07 -SST-S--SS-E...EETTTSEEESCHHHHHHH CS zf-C3HC4 1 CpiCleeakepn...elleCkHsfCskCirkil 30 C+iC +++ +ll C H+fC++C+++++ T208524_1 285 CKICYNYFDADRrapKLLACLHTFCQECLSQLQ 317 ********99888999*************9986 PP == domain 2 score: -4.9 bits; conditional E-value: 6 TTTT CS zf-C3HC4 38 CPlC 41 CP+C T208524_1 348 CPVC 351 6666 PP == domain 3 score: -3.6 bits; conditional E-value: 3.5 EETTTSEE CS zf-C3HC4 13 elleCkHs 20 ell+C H+ T208524_1 687 ELLKCSHT 694 6899***7 PP == domain 4 score: -3.4 bits; conditional E-value: 3.1 SCHHH CS zf-C3HC4 22 CskCi 26 CskCi T208524_1 732 CSKCI 736 88888 PP == domain 5 score: -7.7 bits; conditional E-value: 6 TSEEES CS zf-C3HC4 17 CkHsfC 22 C+H C T208524_1 1032 CNHCTC 1037 777666 PP >> zf-RING_2 Ring finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 8.8 1.4e-07 0.00038 2 44 .] 284 352 .. 283 352 .. 0.68 2 ? -5.6 6.2 6 1.6e+04 18 28 .. 1029 1039 .. 1020 1043 .. 0.69 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 1.4e-07 zf-RING_2 2 eCpICleelesgdsvlll.pCgHvfhreClekw.lrssst........................CPlCr 44 eC IC++ ++ ++++++l C H+f++eCl++ lr CP+Cr T208524_1 284 ECKICYNYFDADRRAPKLlACLHTFCQECLSQLqLRAAAAaaaaaaperpprpppwlcppgaiaCPVCR 352 8*************997769**********774333322244444445555555555555556677666 PP == domain 2 score: -5.6 bits; conditional E-value: 6 zf-RING_2 18 llpCgHvfhre 28 l+ C+H+ + + T208524_1 1029 LCGCNHCTCVH 1039 45799998865 PP >> zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 1.9 2.5e-07 0.00068 1 30 [. 284 317 .. 284 322 .. 0.75 2 ? -3.6 0.7 3.5 9.5e+03 37 40 .] 348 351 .. 347 353 .. 0.64 3 ? -8.3 7.3 6 1.6e+04 15 23 .. 1029 1037 .. 1021 1041 .. 0.70 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 2.5e-07 zf-C3HC4_2 1 kCpiCldmlkd...psvvtpCgHvfCqkCilr.s 30 +C+iC++ + + + +C H+fCq+C+ + T208524_1 284 ECKICYNYFDAdrrAPKLLACLHTFCQECLSQlQ 317 6*****9997522233666***********9933 PP == domain 2 score: -3.6 bits; conditional E-value: 3.5 zf-C3HC4_2 37 CPlC 40 CP+C T208524_1 348 CPVC 351 5555 PP == domain 3 score: -8.3 bits; conditional E-value: 6 zf-C3HC4_2 15 vtpCgHvfC 23 + C+H +C T208524_1 1029 LCGCNHCTC 1037 456888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.49 # Mc/sec: 10795.25 // Query: T208524_2 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 352 (0.0215871); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.50 # Mc/sec: 10579.35 // Query: T208524_3 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.45 # Mc/sec: 11754.83 // Query: T004104_1 [L=1212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 7223.60 // Query: T004104_2 [L=1211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1567 (0.0960996); expected 326.1 (0.02) Passed bias filter: 396 (0.0242855); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.53 # Mc/sec: 6536.73 // Query: T004104_3 [L=1211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.44 # Mc/sec: 7873.78 // Query: T253257_1 [L=2349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-23 82.1 0.0 5.9e-23 81.4 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 9.7e-14 51.3 0.0 1.9e-13 50.3 0.0 1.4 1 Gag_p30 Gag P30 core shell protein 1.6e-06 28.2 0.6 2.3e-05 24.4 0.6 2.4 1 RVP Retroviral aspartyl protease 0.00048 20.2 0.0 0.00093 19.3 0.0 1.3 1 RNase_H RNase H ------ inclusion threshold ------ 0.023 15.3 0.1 0.047 14.3 0.1 1.4 1 Asp_protease_2 Aspartyl protease 0.037 14.0 2.5 0.088 12.8 2.5 1.7 1 zf-CCHC Zinc knuckle 0.054 13.9 0.2 0.11 12.9 0.2 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.4 0.0 2.5e-26 5.9e-23 2 222 .] 797 968 .. 796 968 .. 0.89 Alignments for each domain: == domain 1 score: 81.4 bits; conditional E-value: 2.5e-26 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET... CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkl 101 +K+g+++y p+ d+ ++n++++ l++ p+ + ++ ++ ++++ lDlk+aF+s++l+ +++kl+af+ +++ T253257_1 797 HKPGTKDYHPV----QDLCLVNQATVT---------LHPTVPNPYTLSGL------------LPAEDCWFTCLDLKDAFFSIRLAPDSQKLFAFQWEDP- 870 67777777775....577777888887.........77777777777666............45789******************************66. PP ......................TEE..EEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS RVT_1 102 inliksflstrsfsvrvngeesegr..yekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199 es+ y+++ lpqG+++SP++f ++ + l+++ ++ g++ll+Y+DD+l+ +++ + + ++a+ ++l+++g+k++ T253257_1 871 --------------------ESGVTt*YTWTWLPQGFKNSPTIFREALARDLQKFPAKHLGCVLLLYVDDLLLGHSTAVWCAKGMDALLRHLEDYGYKVS 950 ....................44555688************************************************************************ PP GGG-EEE.....ESSEEETTEEE CS RVT_1 200 peKtklvlfsgkseevkyLGvtl 222 ++K +++ +++v+yLG+t+ T253257_1 951 KKKAHVC-----RQQVRYLGFTI 968 *******.....9********97 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.3 0.0 8e-17 1.9e-13 137 209 .. 400 472 .. 391 474 .. 0.92 Alignments for each domain: == domain 1 score: 50.3 bits; conditional E-value: 8e-17 Gag_p30 137 eespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkr 209 ++sp f e l eay +ytp+dp++pe++ + +++++qsa dir+klq+ g+ +++ ++l+ a++ + r T253257_1 400 KKSPVQFYESLCEAYCMYTPFDPDSPENQRMINMALVNQSAEDIRRKLQKQAGFVGMNTSQLLEIADQGFMNR 472 579************************************************************9999887766 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.4 0.6 1e-08 2.3e-05 4 100 .. 585 676 .. 582 677 .. 0.79 Alignments for each domain: == domain 1 score: 24.4 bits; conditional E-value: 1e-08 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEE.EEETTEEEEE..E.EEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaie.vllieekfrgevs.plilpelpvnllGrdlLqklgvrL 100 + ++++ g k i++l+DtGA+++v++ P + k++ + G+++ + ++ ++l v+ +l +p+ p++llGr+lL+kl +++ T253257_1 585 EAMVRITTGDKNIKFLVDTGAEHSVVTTLVAPLS----KKTIDIIGATQVSTKQAFCL-P*TCLVGG--CEIVH*FLYMPDYPLPLLGRNLLSKLRATI 676 67899999999***********************....88888888877654444333.33344433..344699999****************99887 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.0 4e-07 0.00093 5 56 .. 1222 1274 .. 1219 1289 .. 0.84 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 4e-07 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk 56 +Y+D s++ n +ge++ag+ v+ + a ++pl++ ++++++EL+A++ a + T253257_1 1222 ELYVDWSSFINpQGERCAGYaVVTLD-AVIEAKPLPQGTSAQKTELIALTRAQE 1274 68*********99999****766766.5677899***************99965 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.1 2e-05 0.047 1 28 [. 588 615 .. 587 633 .. 0.83 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispela 28 v++t ++k ++fl+DTGa ++++++ +a T253257_1 588 VRITTGDKNIKFLVDTGAEHSVVTTLVA 615 5677799****************98665 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 2.5 3.8e-05 0.088 2 17 .. 527 542 .. 526 543 .. 0.93 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.8e-05 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 +C +C e+GH++ Cp T253257_1 527 QCAYCKEIGHWKDKCP 542 8**************9 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.2 4.8e-05 0.11 3 28 .. 590 615 .. 588 633 .. 0.85 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 4.8e-05 EEETTEEEEEEEETT-SS-EEEHHHH CS gag-asp_proteas 3 vtingkpvkflvDTGAsstiiseela 28 +t +k++kflvDTGA+++++++ +a T253257_1 590 ITTGDKNIKFLVDTGAEHSVVTTLVA 615 6677899**************98766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 12923.25 // Query: T253257_2 [L=2349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-14 53.3 0.1 1.9e-14 53.3 0.1 1.9 2 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.3 0.1 1.2e-18 1.9e-14 1 84 [. 42 123 .. 42 160 .. 0.87 2 ? -4.9 2.2 1 1.6e+04 84 109 .. 175 201 .. 174 213 .. 0.64 Alignments for each domain: == domain 1 score: 53.3 bits; conditional E-value: 1.2e-18 XXX---..HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHH CS Gag_MA 1 Gqtvst..PLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivt 84 Gq +s PL +l++fk + ++ +v + +kl+tlC +Wptl+vgWP eG+ d ++ +kv +kv ++ G+pDq pY t T253257_2 42 GQAQSKpiPLGTMLKNFK--KGFKEDCGVTMTPGKLRTLCDIDWPTLEVGWPSEGSLDRSLFSKVWHKVSCK--PGYPDQFPYTDT 123 6777764478889****9..5677899******************************************977..9********755 PP == domain 2 score: -4.9 bits; conditional E-value: 1 HHHHHHH.S--TTT-XXXXXXXXXXX. CS Gag_MA 84 tWrsLve.dPPpwvkpflpskplpkkk 109 W++Lv PPp+ + lps++ ++++ T253257_2 175 SWQELVPaVPPPYREEGLPSPEPTAPT 201 599999625888888888875544443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 12218.34 // Query: T253257_3 [L=2349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-28 98.1 0.3 6.2e-28 97.6 0.3 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.6 0.3 3.8e-32 6.2e-28 4 142 .. 266 405 .. 264 406 .. 0.91 Alignments for each domain: == domain 1 score: 97.6 bits; conditional E-value: 3.8e-32 Gag_p30 4 pfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvlleark....nvpgedgrptqlpnevdeafpltrpdwdyeta 99 f+++dl nwk+n ps++e+pq lt l+++i+ th+ptw dc ql+ l+ t+erqrvl a k +vp + p ++ + +p t p+wd + T253257_3 266 SFTSADLLNWKNNTPSYAEKPQPLTDLLQTIIQTHNPTWADCHQLFMYLFNTDERQRVLQVATKwl*eHVPADYQNP---QEYIRIQLPGTDPQWDPNEG 362 599************************************************************95555678777766...5679999************* PP Gag_p30 100 egreslklyrqlllaglrgaa.rrptnlakvkevvqgkeespaa 142 + e+l+ y ++l+ gl+ a + tn+ kv ev+qgkees a+ T253257_3 363 PDIERLRRYHEALIEGLNKGA*K-ATNVNKVSEVIQGKEESSAI 405 *****************875555.7***************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12218.34 // Query: T036422_1 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 575 (0.0352631); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 10553.28 // Query: T036422_2 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.53 # Mc/sec: 10752.40 // Query: T036422_3 [L=1992] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1992 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 534 (0.0327487); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 10176.38 // Query: T220676_1 [L=1183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6636.00 // Query: T220676_2 [L=1183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.47 # Mc/sec: 7200.77 // Query: T220676_3 [L=1183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 6906.86 // Query: T220673_1 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 7515.64 // Query: T220673_2 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7362.26 // Query: T220673_3 [L=1261] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1261 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 7215.01 // Query: T090352_1 [L=1463] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1463 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.49 # Mc/sec: 8541.62 // Query: T090352_2 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-32 111.8 10.9 2.1e-32 111.0 10.9 1.4 1 Colipase-like Colipase-like ------ inclusion threshold ------ 6.6 6.4 10.9 3.8 7.1 1.8 2.8 2 Colipase Colipase, N-terminal domain Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 111.0 10.9 2.5e-36 2.1e-32 12 89 .] 304 380 .. 299 380 .. 0.97 Alignments for each domain: == domain 1 score: 111.0 bits; conditional E-value: 2.5e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090352_2 304 EPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 380 79*******************9.99***************************************************97 PP >> Colipase Colipase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 2.0 0.008 65 13 28 .. 309 324 .. 298 330 .. 0.75 2 ? 7.1 1.8 0.00046 3.8 10 38 .. 347 375 .. 345 377 .. 0.87 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.008 B-SSGGGBSSS-EE-S CS Colipase 13 lClNSaQCKSkCCqhe 28 C C S+CC ++ T090352_2 309 RCSHDSECQSSCCVRN 324 5888889******876 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00046 TTSB-SSGGGBSSS-EE-SSSSS--EE-- CS Colipase 10 dGElClNSaQCKSkCCqhesaLslaRCaa 38 +G+ C C S+CC + s RC + T090352_2 347 NGDFCSSHQECHSQCCIQLREYSPFRCIP 375 7999999999******9999998888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.54 # Mc/sec: 7745.43 // Query: T090352_3 [L=1462] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-11 43.9 2.3 3.5e-11 43.0 2.3 1.4 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 2.3 2.1e-15 3.5e-11 12 55 .. 260 303 .. 252 316 .. 0.90 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 2.1e-15 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkp 55 k g C ++ Ec+s+cC ns ++++C++++iflqCl++rk T090352_3 260 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKTIFLQCLPWRKV 303 566889************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1462 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 8201.05 // Query: T138147_1 [L=8140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1399 (0.0857966); expected 326.1 (0.02) Passed bias filter: 373 (0.022875); expected 326.1 (0.02) Passed Vit filter: 126 (0.00772722); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.37u 0.45s 00:00:03.82 Elapsed: 00:00:00.79 # Mc/sec: 29477.41 // Query: T138147_2 [L=8140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1290 (0.079112); expected 326.1 (0.02) Passed bias filter: 375 (0.0229977); expected 326.1 (0.02) Passed Vit filter: 120 (0.00735925); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.28u 0.46s 00:00:03.74 Elapsed: 00:00:00.79 # Mc/sec: 29477.41 // Query: T138147_3 [L=8140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1176 (0.0721207); expected 326.1 (0.02) Passed bias filter: 277 (0.0169876); expected 326.1 (0.02) Passed Vit filter: 78 (0.00478352); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.77u 0.49s 00:00:04.26 Elapsed: 00:00:01.20 # Mc/sec: 19405.96 // Query: T259991_1 [L=6494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.39s 00:00:02.44 Elapsed: 00:00:00.70 # Mc/sec: 26540.33 // Query: T259991_2 [L=6493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.00u 0.41s 00:00:02.41 Elapsed: 00:00:00.79 # Mc/sec: 23513.13 // Query: T259991_3 [L=6493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.18u 0.44s 00:00:02.62 Elapsed: 00:00:00.88 # Mc/sec: 21108.37 // Query: T317382_1 [L=5499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.32s 00:00:02.06 Elapsed: 00:00:00.81 # Mc/sec: 19421.86 // Query: T317382_2 [L=5499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.35s 00:00:02.10 Elapsed: 00:00:00.83 # Mc/sec: 18953.86 // Query: T317382_3 [L=5499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5499 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:00.66 # Mc/sec: 23835.92 // Query: T235381_1 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.68 # Mc/sec: 5006.45 // Query: T235381_2 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 5490.95 // Query: T235381_3 [L=1190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 315 (0.019318); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 5081.18 // Query: T138204_1 [L=9803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 407 (0.0249601); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.35u 0.51s 00:00:03.86 Elapsed: 00:00:00.90 # Mc/sec: 31160.80 // Query: T138204_2 [L=9803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.16u 0.43s 00:00:03.59 Elapsed: 00:00:01.00 # Mc/sec: 28044.72 // Query: T138204_3 [L=9803] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9803 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.92u 0.44s 00:00:03.36 Elapsed: 00:00:00.85 # Mc/sec: 32993.78 // Query: T137259_1 [L=1857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.62 # Mc/sec: 8568.65 // Query: T137259_2 [L=1857] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1857 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 9838.08 // Query: T137259_3 [L=1856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1856 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 7478.45 // Query: T089159_1 [L=4933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.64 # Mc/sec: 22050.74 // Query: T089159_2 [L=4933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-15 55.4 0.1 1.1e-14 54.7 0.1 1.3 1 RNase_H RNase H 2.5e-12 46.1 0.3 2.5e-12 46.1 0.3 1.9 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.7 0.1 1.3e-18 1.1e-14 18 142 .. 3468 3595 .. 3465 3596 .. 0.81 Alignments for each domain: == domain 1 score: 54.7 bits; conditional E-value: 1.3e-18 EEEEEE.EECTT..EEEE.EEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHC CS RNase_H 18 eggaga.vlykegarnis.apleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelak 112 +++ag+ ++++ i+ ++l++ +t ++aEL+A++ aL a ++ +vniytDS+ +++ +++ +w +++ tt+ + ++n +l+++l ++a T089159_2 3468 PAKAGYaIVSST--SIIEaTTLSPSTTSQQAELIALTRALTlA--KGLCVNIYTDSQHAFHILHHHAVMWTERGFLTTQGS-SIINSSLIKTLLKAAL 3560 568888555544..44441555599***************977..99**************9999999**99999776666.6***888877766655 PP .SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 113 .kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +k+ + h+kg + ++gN+ aD+ Akeaa T089159_2 3561 lPKEAGVLHCKGNQRAsdptAQGNTYADKTAKEAA 3595 5***********9554458889***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.1 0.3 3.1e-16 2.5e-12 464 499 .. 3829 3864 .. 3828 3872 .. 0.97 2 ? -1.2 2.0 0.069 5.6e+02 542 561 .] 3904 3923 .. 3897 3923 .. 0.89 Alignments for each domain: == domain 1 score: 46.1 bits; conditional E-value: 3.1e-16 HHHHHTGGGTSHHHHHTS--------HHHHHHHHHH CS TLV_coat 464 GLDlLfleeGGlCaALkEeCCFyadksgivrdsiak 499 GLDlL++e+GGlC L+EeCCFy ++sg+v d+i+k T089159_2 3829 GLDLLTAEKGGLCIFLNEECCFYLNQSGLVYDNIKK 3864 9*********************************97 PP == domain 2 score: -1.2 bits; conditional E-value: 0.069 XXXXXXXXXXXXXXXXXXXX CS TLV_coat 542 lLLiLllGPcilnrLvqlik 561 ++Ll+GPc++ + q+i+ T089159_2 3904 FFFLLLFGPCVFSLVSQFIQ 3923 56899************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.72 # Mc/sec: 19600.66 // Query: T089159_3 [L=4933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-14 53.0 0.0 4.3e-14 52.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 4.2e-07 29.6 0.0 7.5e-07 28.7 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 8.6e-06 25.5 1.0 2.2e-05 24.2 1.0 1.8 1 zf-CCHC Zinc knuckle 0.00049 20.2 0.0 0.00088 19.4 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.056 13.0 2.7 0.12 12.0 2.7 1.5 1 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.4 0.0 1.3e-17 4.3e-14 133 210 .. 2706 2783 .. 2705 2784 .. 0.98 Alignments for each domain: == domain 1 score: 52.4 bits; conditional E-value: 1.3e-17 Gag_p30 133 vqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +qgk+e+pa fl l + r +t dpe pe + +++ fi+qsa dirkklq+le ++ ++l++ a kvyn re T089159_3 2706 TQGKDENPAQFLACLAATLRLFTALDPEGPEGRLILSMYFITQSALDIRKKLQKLESGPQTPQQELINFAFKVYNNRE 2783 79*************************************************************************998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.7 0.0 2.3e-10 7.5e-07 3 221 .. 3114 3280 .. 3112 3281 .. 0.74 Alignments for each domain: == domain 1 score: 28.7 bits; conditional E-value: 2.3e-10 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGG.GGG-EEET CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellr.kltafkvp 98 K++ +syR++ d+ ++n++ +++ p+ + l +++ + ++++ +Dlk a ++vpl+ + l+af+ T089159_3 3114 KPD-KSYRLV----QDLCLINQIALP---------IHPVVPNPYTL-------------LFSMPPStTHYSVMDLKHASFTVPLHP-SF*ALFAFTWT 3183 666.666664....466666666666.........55555555555.............333333337778888888888888876.45556666666 PP .........................TEEEEESB--ST-TTHHHHHHHHH.HHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfm.nellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 ++ + +++ ++++lpqG+ SP f+ ++ ++ll + + l+rY D+l++s s + q+ + ++l g T089159_3 3184 DS------------------DT-HQSQQLTWAVLPQGFRGSPHYFSQTLsHDLLSFCPS---ASRLIRYFHDLLLYSPSYISSQQDTLLLLQHLFTKG 3259 44..................23.349999*************99987762567777777...59***************99999999999999999** PP --BEGGG-EEE.....ESSEEETTEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvt 221 ++++p+K ++ s++++yL ++ T089159_3 3260 YHVSPSKAQIS-----SSSITYLSII 3280 ***********.....9*****9876 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 1.0 6.7e-09 2.2e-05 2 17 .. 2833 2848 .. 2832 2849 .. 0.94 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 6.7e-09 CTSSSSSSSSTTTTST CS zf-CCHC 2 kCynCGepGHiardCp 17 C++C++ GH+a++Cp T089159_3 2833 SCFKCQKSGHWAKECP 2848 6**************9 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 2.7e-07 0.00088 64 100 .. 2976 3010 .. 2957 3011 .. 0.80 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 2.7e-07 EEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 64 vllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +l+++ f + s+l++p++pv+llGrd+L+kl + L T089159_3 2976 CQLGQHSFLH--SFLVIPTCPVPLLGRDILTKLSASL 3010 4566677777..*********************9988 PP >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 2.7 3.6e-05 0.12 1 18 [. 2830 2847 .. 2830 2848 .. 0.96 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.6e-05 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 p+g C +C k Hwa++C T089159_3 2830 PSGSCFKCQKSGHWAKEC 2847 7999************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.75u 0.34s 00:00:02.09 Elapsed: 00:00:00.78 # Mc/sec: 18092.92 // Query: T103732_1 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 366 (0.0224457); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.71 # Mc/sec: 13603.05 // Query: T103732_2 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 399 (0.0244695); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 13051.57 // Query: T103732_3 [L=3376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.5 0.0 0.056 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.059 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.06 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2931 3266 .. 2931 3266 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103732_3 2931 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3016 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103732_3 3017 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3073 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103732_3 3074 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3166 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103732_3 3167 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3259 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103732_3 3260 QLLQNHA 3266 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.056 1 72 [. 3301 3370 .. 3301 3375 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103732_3 3301 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3370 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2955 3078 .. 2921 3085 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103732_3 2955 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3048 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103732_3 3049 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3078 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 2996 3085 .. 2994 3087 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103732_3 2996 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3085 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 2982 3083 .. 2981 3085 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103732_3 2982 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3076 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103732_3 3077 QEIWDYV 3083 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 2984 3078 .. 2980 3085 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103732_3 2984 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3078 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1006 1020 .. 992 1023 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 2989 3041 .. 2982 3047 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103732_3 1006 SKKKKRKKERKKR-----KK 1020 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103732_3 2989 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3041 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3014 3073 .. 2994 3081 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103732_3 3014 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3073 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 910 (0.0558077); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.81u 0.34s 00:00:02.15 Elapsed: 00:00:00.83 # Mc/sec: 11636.34 // Query: T291761_1 [L=2512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.032 14.1 2.1 0.032 14.1 0.2 2.1 2 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF Domain annotation for each model (and alignments): >> DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.2 0.78 1.3e+04 16 22 .. 1785 1791 .. 1784 1792 .. 0.85 2 ? 14.1 0.2 2e-06 0.032 11 55 .. 2234 2278 .. 2228 2282 .. 0.89 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 0.78 DUF2116 16 desfCse 22 +esfCse T291761_1 1785 QESFCSE 1791 69****8 PP == domain 2 score: 14.1 bits; conditional E-value: 2e-06 DUF2116 11 kaIpldesfCsekCqeeyekkrkkvarsqqilfgililllavvlv 55 + Ip+ +s+ C +e++r+ ++++ i+f+i+i++ +++ + T291761_1 2234 NRIPPADSLMHFSCVRSWESRRRSTIQTRGIVFLIVIIVSLIYSF 2278 569999999999**************************9888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2512 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.86 # Mc/sec: 8356.28 // Query: T291761_2 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:00.70 # Mc/sec: 10262.21 // Query: T291761_3 [L=2511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.34s 00:00:01.33 Elapsed: 00:00:00.73 # Mc/sec: 9840.47 // Query: T001010_1 [L=426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 1965.67 // Query: T001010_2 [L=425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.63 # Mc/sec: 1929.92 // Query: T001010_3 [L=425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 342 (0.0209739); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 2294.06 // Query: T259388_1 [L=2842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.61 # Mc/sec: 13328.65 // Query: T259388_2 [L=2842] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2842 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14264.00 // Query: T259388_3 [L=2841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.59 # Mc/sec: 13775.62 // Query: T185623_1 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 2871.43 // Query: T185623_2 [L=542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.2 6.3 6.2 9.1 4.9 0.3 1.9 2 BBP2_2 Putative beta-barrel porin 2 7.8 6.5 12.4 22 5.1 0.2 3.6 6 TetR_C_12 Bacterial transcriptional repressor C-terminal Domain annotation for each model (and alignments): >> BBP2_2 Putative beta-barrel porin 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.3 0.0011 9.1 14 81 .. 247 315 .. 246 318 .. 0.77 2 ? 3.1 6.3 0.004 32 18 114 .. 279 376 .. 278 391 .. 0.71 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0011 BBP2_2 14 FllkPsvelglgydsNvyats.nkgsdvlltvapelrvrSdW.srHaLeldlrgsltrysdnsdedrpdf 81 + ++P++ ++++ +N++ +s ++ d +l+ +pe++vrS W sr + e+++r s++ +++ e r+++ T185623_2 247 WQVLPRLASQISF-RNLTGVSiPRPADQALRRSPEVEVRSSWkSRRSPEVEVRSSWKSRRSPEVEVRSSW 315 6677888888887.577788886666666699**********5588899999999999888777777666 PP == domain 2 score: 3.1 bits; conditional E-value: 0.004 BBP2_2 18 PsvelglgydsNvyatsnkgsdvlltvapelrvrSdWsrHaL.eldlrgsltrysdnsdedrpdfnveargrlDvtrdtrlngelgyeldredrsspn 114 P+ve++ ++ s + +s++ + +pe++vrS W+ ++ e+++r s++ +++ e r++++ + + ++v ++ r +g+ ++e++ rs + T185623_2 279 PEVEVRSSWKSRRSPEVEVRSSWKSRRSPEVEVRSSWKSRRIpEVEVRSSWKSRRSPEVEVRSSWRSRRSPEVEVRSSWRSRGSPEVEVRSSWRSRRS 376 55666666666555555667777778888888888887777657888888888888888888888888888888888888888777777765555544 PP >> TetR_C_12 Bacterial transcriptional repressor C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.2 0.0027 22 60 79 .. 283 302 .. 269 303 .. 0.84 2 ? 4.4 0.4 0.0045 36 60 79 .. 297 316 .. 294 319 .. 0.91 3 ? 2.6 0.3 0.016 1.3e+02 60 79 .. 311 330 .. 303 332 .. 0.90 4 ? 4.4 0.6 0.0043 35 60 78 .. 325 343 .. 317 348 .. 0.88 5 ? 3.8 0.5 0.0065 53 60 78 .. 339 357 .. 333 360 .. 0.90 6 ? 1.6 0.2 0.032 2.6e+02 60 78 .. 353 371 .. 348 374 .. 0.90 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0027 CCTT---SS-HHHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFWs 79 +r W++r++++ve+r W T185623_2 283 VRSSWKSRRSPEVEVRSSWK 302 7999*************995 PP == domain 2 score: 4.4 bits; conditional E-value: 0.0045 CCTT---SS-HHHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFWs 79 +r W++r++++ve+r W T185623_2 297 VRSSWKSRRSPEVEVRSSWK 316 6899*************995 PP == domain 3 score: 2.6 bits; conditional E-value: 0.016 CCTT---SS-HHHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFWs 79 +r W++r+ ++ve+r W T185623_2 311 VRSSWKSRRIPEVEVRSSWK 330 6899*************995 PP == domain 4 score: 4.4 bits; conditional E-value: 0.0043 CCTT---SS-HHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFW 78 +r W++r++++ve+r W T185623_2 325 VRSSWKSRRSPEVEVRSSW 343 7999*************99 PP == domain 5 score: 3.8 bits; conditional E-value: 0.0065 CCTT---SS-HHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFW 78 +r W++r++++ve+r W T185623_2 339 VRSSWRSRRSPEVEVRSSW 357 6899*************99 PP == domain 6 score: 1.6 bits; conditional E-value: 0.032 CCTT---SS-HHHHHHHHH CS TetR_C_12 60 ertgWqlragidvearaFW 78 +r W++r +++ve+r W T185623_2 353 VRSSWRSRGSPEVEVRSSW 371 6899*************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.54 # Mc/sec: 2871.43 // Query: T185623_3 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.55 # Mc/sec: 2814.02 // Query: T155905_1 [L=4292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 503 (0.0308475); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.35s 00:00:01.95 Elapsed: 00:00:00.80 # Mc/sec: 15348.35 // Query: T155905_2 [L=4291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 491 (0.0301116); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.35s 00:00:01.91 Elapsed: 00:00:00.76 # Mc/sec: 16152.40 // Query: T155905_3 [L=4291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.30s 00:00:02.12 Elapsed: 00:00:00.83 # Mc/sec: 14790.15 // Query: T051667_1 [L=4518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.37s 00:00:01.91 Elapsed: 00:00:00.74 # Mc/sec: 17466.53 // Query: T051667_2 [L=4518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4518 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.84 # Mc/sec: 15387.18 // Query: T051667_3 [L=4517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.29s 00:00:01.95 Elapsed: 00:00:00.94 # Mc/sec: 13747.20 // Query: T181774_1 [L=2106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 8992.40 // Query: T181774_2 [L=2106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 9717.59 // Query: T181774_3 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 8988.13 // Query: T238276_1 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.65 # Mc/sec: 1804.52 // Query: T238276_2 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 2094.54 // Query: T238276_3 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2340.16 // Query: T158303_1 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 1988.51 // Query: T158303_2 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 2205.44 // Query: T158303_3 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 2527.07 // Query: T105652_1 [L=2486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.26s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 12930.95 // Query: T105652_2 [L=2486] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2486 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.55 # Mc/sec: 12930.95 // Query: T105652_3 [L=2485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-12 46.9 2.8 1.4e-12 46.9 2.8 1.8 2 SERTA SERTA motif 8.9e-12 44.9 3.0 8.9e-12 44.9 3.0 2.2 2 UPF0730 UPF0730 unknown protein family Domain annotation for each model (and alignments): >> SERTA SERTA motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.9 2.8 1.8e-16 1.4e-12 1 36 [] 442 476 .. 442 476 .. 0.96 2 ? -3.2 0.0 0.79 6.4e+03 15 22 .. 1756 1763 .. 1751 1764 .. 0.85 Alignments for each domain: == domain 1 score: 46.9 bits; conditional E-value: 1.8e-16 SERTA 1 vLnlSLvKLqrsrdlvEpsLrRsVLInNtLRrIqrE 36 +L+lSL+KL++ +d +E +LrRsVLInN+LR+I+ E T105652_3 442 ILKLSLEKLRFLED-PETYLRRSVLINNLLRKIHLE 476 89************.******************966 PP == domain 2 score: -3.2 bits; conditional E-value: 0.79 SERTA 15 lvEpsLrR 22 +++p+LrR T105652_3 1756 FPDPDLRR 1763 689****9 PP >> UPF0730 UPF0730 unknown protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.9 1.9 1.5e+04 27 40 .. 246 259 .. 241 261 .. 0.76 2 ! 44.9 3.0 1.1e-15 8.9e-12 1 46 [] 508 553 .. 508 553 .. 0.99 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 1.9 UPF0730 27 yGlGyPssPPdhsP 40 G ssPP +P T105652_3 246 PSCGGASSPPSNAP 259 566889****9988 PP == domain 2 score: 44.9 bits; conditional E-value: 1.1e-15 UPF0730 1 dccaePfsyeelqhyhvvPyGsGnclyGlGyPssPPdhsPqllvyk 46 +cc++ + yeel yh+vPy s n +y +Gy ss + qll+yk T105652_3 508 ECCSQSLYYEELHSYHIVPYASENAIYEMGYTSSHLEQNSQLLIYK 553 6********************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2485 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 12925.75 // Query: T111699_1 [L=5539] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5539 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.28s 00:00:01.73 Elapsed: 00:00:00.61 # Mc/sec: 25977.27 // Query: T111699_2 [L=5538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.61 # Mc/sec: 25972.58 // Query: T111699_3 [L=5538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.28s 00:00:01.64 Elapsed: 00:00:00.61 # Mc/sec: 25972.58 // Query: T157617_1 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-09 36.0 0.0 9.2e-09 35.4 0.0 1.3 1 rve Integrase core domain 6.5e-05 22.5 0.0 0.00011 21.8 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.4 0.0 1.1e-12 9.2e-09 3 116 .. 1023 1133 .. 1021 1136 .. 0.90 Alignments for each domain: == domain 1 score: 35.4 bits; conditional E-value: 1.1e-12 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvi.alleravarfggvepervlsDngseytskafreflaelgirv.sftr 98 +p +wq+D+ + p+++g+ ++l+ id++sr+ +a++ + +a+t+i +l+e+ + r g p + sD+ + +++k++r+++ +gi + s++ T157617_1 1023 QPATWWQGDYIRPP-PSWKGQRFVLTGIDTYSRYGFAYPAHNA-SAKTTI*GLTECLIHRHGI--PHSMASDQCPHFVAKEVRQWAHAHGI-H*SYHV 1115 7999*******555.688889**********************.***********99999999..9************************9.666788 PP rve 99 pgrpqdnGkvErfnrtlk 116 p++p+ G++E n++ k T157617_1 1116 PHHPEAAGLIEWWNGLSK 1133 999999999998888766 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 1.3e-08 0.00011 10 97 .. 1207 1292 .. 1199 1312 .. 0.87 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 1.3e-08 STT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEE CS dUTPase 10 spesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiA 97 + +sAg+++ ++++ t++pg+t+ +p++ ++ lp g+ +l+l + +kg++v+ gv d dy+ e+ + l n +k++ + + gd + T157617_1 1207 TLRSAGLEVLVPEEGTLPPGDTT-IPLNWKLRLPPGHFGLLLLSQQ-VKKGVTVLSGVTDPDYQDEICLLLHNGGKEECSWNIGDPLG 1292 6689***************8875.7****************99776.89**************************9988877777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 7817.77 // Query: T157617_2 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 8469.25 // Query: T157617_3 [L=1420] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-08 34.5 0.2 3.1e-08 33.8 0.2 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 0.2 1.9e-12 3.1e-08 4 138 .. 807 945 .. 804 948 .. 0.83 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 1.9e-12 EEEEEEEEEECT....TTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SC.SEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSB CS RNase_H 4 vvvYtDGsclgn....sgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksd.ekvniytDSkYvvkgitqwvhrwkknawkttseqkp 97 ++tDGs + +++ +a+a+ + +r+ + e ++ + aE+ ++ +++ k++ ++v +ytD v +g+ w +wkk++wk +++ T157617_3 807 RAWFTDGST--R*agiTQKWTAAALQSL--SRTSLKDSGEGKSFQWAEILSLHLVVHfVCKEK*PDVRLYTDTWAVANGLAGWSGTWKKHDWKIGDKG-- 900 579*****5..45412444444444443..4655555557*****************877888*****************************999888.. PP HTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHH CS RNase_H 98 vknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlA 138 + k ++ l+e k +k+ + hv +H+ + + N++aDr++ T157617_3 901 IWGKGMWMDLSEWSKTVKIFVFHVSAHQWVt*seEEFNNQADRMT 945 9999***********************998887766899999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1420 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.46 # Mc/sec: 8831.26 // Query: T219666_1 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 5429.49 // Query: T219666_2 [L=892] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (892 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5316.38 // Query: T219666_3 [L=891] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (891 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.46 # Mc/sec: 5541.30 // Query: T106653_1 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 95 (0.00582608); expected 326.1 (0.02) Passed bias filter: 50 (0.00306636); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 6504.01 // Query: T106653_2 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-21 76.7 2.8 1.6e-21 76.7 2.8 3.6 5 ADAM_CR ADAM cysteine-rich 2.1e-16 60.4 26.2 2.1e-16 60.4 26.2 3.3 3 Disintegrin Disintegrin Domain annotation for each model (and alignments): >> ADAM_CR ADAM cysteine-rich # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -8.0 4.8 2 1.6e+04 4 15 .. 696 707 .. 685 718 .. 0.65 2 ? -5.9 2.6 2 1.6e+04 2 12 .. 712 723 .. 704 738 .. 0.59 3 ! 76.7 2.8 2e-25 1.6e-21 1 109 [. 761 877 .. 761 881 .. 0.86 4 ? 1.9 2.7 0.034 2.8e+02 1 19 [. 885 904 .. 885 910 .. 0.90 5 ? -4.4 4.4 2 1.6e+04 4 27 .. 909 932 .. 907 938 .. 0.60 Alignments for each domain: == domain 1 score: -8.0 bits; conditional E-value: 2 ADAM_CR 4 pCkeayCykgkC 15 C++ C++ +C T106653_2 696 DCASDRCCETSC 707 355555555555 PP == domain 2 score: -5.9 bits; conditional E-value: 2 ADAM_CR 2 gtpCke.ayCyk 12 g+ C++ +C k T106653_2 712 GSVCNTgLCCHK 723 455655333333 PP == domain 3 score: 76.7 bits; conditional E-value: 2e-25 ADAM_CR 1 dgtpCke.ayCykgkCktrdeqCkelfgkgaksapdaCyeelnskgdr.fgnCgkeskkk...yvkcekedvlCGklqCenvkekp...elkeeatviqt 92 dgtpC+ ++C++g+C++rd qC++lfg ++k+++ aCy++ln + fgnCg ++ +ce++dv+CG+l+C++v+++p e + ++++ + T106653_2 761 DGTPCSAvSVCIRGNCSDRDMQCQALFGYQVKDGSPACYQKLNRI-GN*FGNCGVILRRGgsrPFPCEEDDVFCGMLHCSGVSHIPg*aEHTTFRNILVH 859 9**************************************999975.4699****98444355699********************955345555999999 PP ADAM_CR 93 kiknkeCvgidvh.eedv 109 +ik+++C+g+++h ++d T106653_2 860 DIKEEKCFGYEAHqGTDL 877 9999*******9745555 PP == domain 4 score: 1.9 bits; conditional E-value: 0.034 ADAM_CR 1 dgtpCke.ayCykgkCktrd 19 dg +C +yC+k +C++++ T106653_2 885 DGATCGPgSYCLKHNCTSYQ 904 899**999*********987 PP == domain 5 score: -4.4 bits; conditional E-value: 2 ADAM_CR 4 pCkeayC.ykgkCktrdeqCkelfg 27 +C+ + C ykg C+++ ++C+ l g T106653_2 909 ECDLKTCnYKGVCNNK-KHCHCLHG 932 5777566467777654.45555544 PP >> Disintegrin Disintegrin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.4 26.2 2.5e-20 2.1e-16 2 76 .] 685 756 .. 684 756 .. 0.95 2 ? -2.3 1.4 0.9 7.4e+03 33 52 .. 765 783 .. 759 801 .. 0.51 3 ? 0.4 8.3 0.13 1.1e+03 29 71 .. 885 926 .. 863 932 .. 0.76 Alignments for each domain: == domain 1 score: 60.4 bits; conditional E-value: 2.5e-20 Disintegrin 2 egEeCDcGsteeckkdkCCdaktCklkkgaqCsageCckekCklksagtvCreakdeeCdlpeyCdGksaeCped 76 + EeCDcGs ++c +d+CC+ ++C+l+ g+ C++g Cc+ kCk+++ g vCr+ Cdlp+yCdGk++eCp+d T106653_2 685 QREECDCGSLKDCASDRCCE-TSCTLSLGSVCNTGLCCH-KCKYAAPGVVCRDL-GGICDLPKYCDGKKEECPND 756 68******************.9*****************.7************6.556***************97 PP == domain 2 score: -2.3 bits; conditional E-value: 0.9 Disintegrin 33 Csa.geCckekCklksagtvC 52 Csa + C + +C+ ++++C T106653_2 765 CSAvSVCIRGNCS--DRDMQC 783 3322333333332..222222 PP == domain 3 score: 0.4 bits; conditional E-value: 0.13 Disintegrin 29 kgaqCsa.geCckekCkl.ksagtvCreakdeeCdlpeyCdGksa 71 +ga+C + C k++C+ + + C + +C+ + +C+ k++ T106653_2 885 DGATCGPgSYCLKHNCTSyQDLHFECDL--K-TCNYKGVCNNKKH 926 6789986477999999752666778887..4.5999999987653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 6504.01 // Query: T106653_3 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-16 60.8 0.0 3.4e-16 59.6 0.0 1.6 2 Pep_M12B_propep Reprolysin family propeptide 3.9e-15 56.2 0.5 6.2e-15 55.5 0.5 1.3 1 Reprolysin Reprolysin (M12B) family zinc metalloproteas 0.0049 16.9 0.8 0.0082 16.2 0.8 1.2 1 Reprolysin_5 Metallo-peptidase family M12 0.0049 17.2 0.2 0.0091 16.4 0.2 1.4 1 Reprolysin_3 Metallo-peptidase family M12B Reprolysin-lik ------ inclusion threshold ------ 0.11 11.9 0.0 0.18 11.3 0.0 1.2 1 Reprolysin_4 Metallo-peptidase family M12B Reprolysin-lik Domain annotation for each model (and alignments): >> Pep_M12B_propep Reprolysin family propeptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 0.0 1.1e-19 3.4e-16 3 125 .. 310 416 .. 303 435 .. 0.86 2 ? -3.8 0.0 4 1.3e+04 35 63 .. 461 489 .. 439 495 .. 0.65 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 1.1e-19 Pep_M12B_propep 3 viPvrvdeegeflshelkkkrrrRslseeeekeerlsyrlkafgkefhLnLeknsellapgftvetrredgeereespeeeehCyYqGtvrgep 96 viP++v +rR e +++lsy+++++g++++++++++++++ +++ v+t +++g +e+ p + ++CyY +++g p T106653_3 310 VIPRKVP--------------HRRGG-VE--MPDQLSYSMHFRGRRHVIHMKLKKNMMPRHLPVFTNNDQGAMQENYPFVPRDCYYDCYLEGVP 386 4444444..............23333.22..369*********************************999999999999999************ PP Pep_M12B_propep 97 gssvalstCsG.lrGvirteneeYfIePle 125 gs ++l tC G lrG++++++ +Y I+Ple T106653_3 387 GSVATLDTCRGgLRGMLQVDDLTYEIKPLE 416 *********9659****************7 PP == domain 2 score: -3.8 bits; conditional E-value: 4 Pep_M12B_propep 35 eerlsyrlkafgkefhLnLeknsellapg 63 +e y +++ k+++L+ + ++l+ ++ T106653_3 461 REGHVYLWRHHRKNLKLHYTVTNGLFMQN 489 46666777788888888888777777655 PP >> Reprolysin Reprolysin (M12B) family zinc metalloprotease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.5 0.5 1.9e-18 6.2e-15 4 187 .. 476 654 .. 473 663 .. 0.86 Alignments for each domain: == domain 1 score: 55.5 bits; conditional E-value: 1.9e-18 EEEEEE-HHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEE-SS--SS---SSHHHHHHHHHHHHHHCTTTS-..SEEEEEESS.--STT CS Reprolysin 4 elfivvdkklfkkmgsdveavrqkvlevvnlvnkiykelnirvvLvglEiWsdedkievskdaeetLeeflkwkeellkkrkkhdaaqLlsgk.efekk 101 +l+ v + lf+++ ++ ++ ++v+ + ++ +i+k + ++v + l iW+d+d + + a+ ++ ef +wk +++ +hd+ ++++ + + T106653_3 476 KLHYTVTNGLFMQNP-NMSHIIENVVIINSIIHTIFKPVYLNVYVRVLCIWNDMDIVMYNMPADLVVGEFGSWKYYEWFSQIPHDTSVVFTSN*L-GN- 571 566666777776655.9999*****************************************************************9988876553.33. PP --EEE-TT-TTSTTTSEEEEE--SSSHHHHHHHHHHHHHHHCT---GHHTTS--STTS-BTTST.TTTS---C--HHHHHHHHHHC CS Reprolysin 102 tvGaayvgglCskeksggvaedkkknlealavilaqeLghnlGlthdeekeCkceekgvCiMneeagsssgvkFskcsiedfeqfl 187 + a ++g+C+++ ++ + + +l a++ a+ Lghn+Gl+hd+ +C+c ++++ +M++ + + s+cs e ++ + T106653_3 572 SECYASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHDSV-GCYCFRRTNYLMAP--VPDLNDMMSNCSYEIIQRKF 654 46899********88887777777999999*******************.9****9*******9..66667799****98766655 PP >> Reprolysin_5 Metallo-peptidase family M12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.8 2.5e-06 0.0082 140 186 .. 599 634 .. 570 644 .. 0.74 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 2.5e-06 Reprolysin_5 140 atevqvvaHElGHnfGavHDcdsssesqsCslsnstepaggryiMap 186 + v+aH lGHn+G +HD + C ++ ++ +y+Map T106653_3 599 FRGACVTAHALGHNMGLRHDSVG------C-----YCFRRTNYLMAP 634 466789**************994......4.....345699999998 PP >> Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.2 2.8e-06 0.0091 81 124 .] 575 618 .. 561 618 .. 0.91 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 2.8e-06 Reprolysin_3 81 lAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfganHt 124 +A + ++cn++++a +++ ++ ga ++aH +GHn+g++H+ T106653_3 575 YASFDGICNPNWGAMFVYIMRYHLFRGACVTAHALGHNMGLRHD 618 588899*******999999988888999***************7 PP >> Reprolysin_4 Metallo-peptidase family M12B Reprolysin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 5.6e-05 0.18 138 193 .. 604 651 .. 595 658 .. 0.85 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 5.6e-05 Reprolysin_4 138 ifAHEiGHtfGaaHdlsdegeglsskteegsgqtIMsyaseasqeafapisirlia 193 + AH GH++G+ Hd + g+ ++ + +++M+++ + +++++++s ++i T106653_3 604 VTAHALGHNMGLRHD--SVGC-----YCFRRTNYLMAPVPDL-NDMMSNCSYEIIQ 651 57************9..4678.....89999*******9876.5899999999984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.49 # Mc/sec: 6498.17 // Query: T188418_1 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 628 (0.0385134); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.55 # Mc/sec: 12145.52 // Query: T188418_2 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.5 8.0 5.6 4.4 7.3 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.6 0.00027 4.4 66 103 .. 422 459 .. 419 480 .. 0.62 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00027 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188418_2 422 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 459 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1076 (0.065988); expected 326.1 (0.02) Passed bias filter: 510 (0.0312768); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.30s 00:00:01.49 Elapsed: 00:00:00.56 # Mc/sec: 11928.64 // Query: T188418_3 [L=2335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1107 (0.0678891); expected 326.1 (0.02) Passed bias filter: 437 (0.0268); expected 326.1 (0.02) Passed Vit filter: 71 (0.00435423); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.28s 00:00:01.46 Elapsed: 00:00:00.51 # Mc/sec: 13098.11 // Query: T138209_1 [L=8959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.33s 00:00:02.19 Elapsed: 00:00:00.66 # Mc/sec: 38833.60 // Query: T138209_2 [L=8959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.32s 00:00:02.19 Elapsed: 00:00:00.64 # Mc/sec: 40047.15 // Query: T138209_3 [L=8958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.11u 0.34s 00:00:02.44 Elapsed: 00:00:00.67 # Mc/sec: 38249.72 // Query: T353056_1 [L=1290] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1290 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 7688.48 // Query: T353056_2 [L=1289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 7375.22 // Query: T353056_3 [L=1289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.50 # Mc/sec: 7375.22 // Query: T277299_1 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 802 (0.0491843); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.60 # Mc/sec: 13102.60 // Query: T277299_2 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 718 (0.0440329); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:00.65 # Mc/sec: 12094.71 // Query: T277299_3 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 572 (0.0350791); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.61 # Mc/sec: 12887.80 // Query: T145364_1 [L=7703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.32s 00:00:01.96 Elapsed: 00:00:00.59 # Mc/sec: 37350.80 // Query: T145364_2 [L=7703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.32s 00:00:01.94 Elapsed: 00:00:00.57 # Mc/sec: 37994.78 // Query: T145364_3 [L=7703] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7703 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.34s 00:00:02.04 Elapsed: 00:00:00.60 # Mc/sec: 36728.29 // Query: T198267_1 [L=2269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.05 12.4 15.6 0.081 11.7 15.6 1.2 1 DUF2722 Protein of unknown function (DUF2722) 1.7 8.4 9.0 2.8 7.7 9.0 1.2 1 Suf Suppressor of forked protein (Suf) 2.2 7.7 25.8 3.7 6.9 25.8 1.3 1 Spt20 Spt20 family 5.5 6.7 22.1 9.9 5.9 22.1 1.3 1 TFIIA Transcription factor IIA, alpha/beta subunit Domain annotation for each model (and alignments): >> DUF2722 Protein of unknown function (DUF2722) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 15.6 2e-05 0.081 18 47 .. 830 867 .. 818 912 .. 0.72 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2e-05 DUF2722 18 qvskqqqkkesskqgsqqeqksqqqqqsq........t 47 +++qqq++++++q++qq+q++qqqqq+q + T198267_1 830 WAQQQQQQQQQQQQQQQQQQQQQQQQQQQsffdvvtvN 867 45555555555555555555555555555556666554 PP >> Suf Suppressor of forked protein (Suf) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 9.0 0.00069 2.8 211 257 .. 815 858 .. 770 876 .. 0.49 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00069 Suf 211 kPdklqmvespkkgaagrrleqqrksessksaeaasksqkalqqqpa 257 P + ++ ++ + ++qq+++++++++++++++q+++qqq++ T198267_1 815 APGTRTQARAAPRI---SWAQQQQQQQQQQQQQQQQQQQQQQQQQQQ 858 23333333222222...222222222222222222222333333333 PP >> Spt20 Spt20 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 25.8 0.00092 3.7 111 138 .. 826 858 .. 800 870 .. 0.51 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00092 Spt20 111 q.....qnqqqqqqqqqqqqqqqqqqeqqqqqn 138 + q+qqqqqqqqqqqqqqqqqq+qqqqq+ T198267_1 826 PriswaQQQQQQQQQQQQQQQQQQQQQQQQQQQ 858 144443222222222222222222222222222 PP >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 22.1 0.0024 9.9 198 227 .. 817 858 .. 780 882 .. 0.41 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0024 TFIIA 198 q..............qqqqqqqqqqqqqqqvqqqqqeesqqaqq 227 + qqqqqqqqqqqqqqq+qqqqq +qq+qq T198267_1 817 GtrtqaraapriswaQQQQQQQQQQQQQQQQQQQQQ--QQQQQQ 858 022222333333332222111111111111111111..111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2194 (0.134552); expected 326.1 (0.02) Passed bias filter: 734 (0.0450141); expected 326.1 (0.02) Passed Vit filter: 167 (0.0102416); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.51u 0.38s 00:00:01.89 Elapsed: 00:00:00.62 # Mc/sec: 10469.71 // Query: T198267_2 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.41 11.4 5.3 0.69 10.6 5.3 1.3 1 Chorion_2 Chorion family 2 Domain annotation for each model (and alignments): >> Chorion_2 Chorion family 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 5.3 4.2e-05 0.69 23 66 .. 796 856 .. 777 863 .. 0.62 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 4.2e-05 Chorion_2 23 i.....ygrgrG.nrgYgrsve..............sgrrygdsspsdseaislaklalAapea 66 y+r rG n +++ e s +++ss+s+s+++s ++++++++++ T198267_2 796 LlslkrYKRSRGeNACMAGPREpglrpeqhqg*vglS---SSSSSSSNSSSSSNSSSSSSSSSS 856 255555******9999999988***********6652...333444444444444433333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 442 (0.0271066); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 11383.09 // Query: T198267_3 [L=2268] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2268 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 459 (0.0281491); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 11586.36 // Query: T163778_1 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-13 50.7 1.3 2.6e-13 49.9 1.3 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 1.3 1.6e-17 2.6e-13 2 98 .. 1936 2034 .. 1929 2044 .. 0.92 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 1.6e-17 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-E CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltaf 95 K +++y p+s++++ k+lnk++a+++++++++++++ q+g pg + + ++ ++++++++ k+k+ +++++ +kaFd++++++ ++++ + T163778_1 1936 TK--KENYKPMSVINIHAKILNKILANQIQQHIKNIIHHVQVGSIPGMQGWFNIrksiNVIHHINRIKNKNPTIISIATEKAFDKIQHPFMIKTISKT 2031 34..469**************************************************99999999999999**********************99887 PP EET CS RVT_1 96 kvp 98 +++ T163778_1 2032 SIK 2034 776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 398 (0.0244082); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 13041.44 // Query: T163778_2 [L=2644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.9 7.4 7.7 1 9.2 0.7 2.3 2 DUF1664 Protein of unknown function (DUF1664) 7.2 7.2 6.6 4.9 7.7 1.3 2.5 2 Sas10_Utp3 Sas10/Utp3/C1D family Domain annotation for each model (and alignments): >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.7 0.00013 1 35 71 .. 1054 1090 .. 1047 1099 .. 0.86 2 ? 1.3 1.1 0.036 2.9e+02 62 108 .. 1720 1771 .. 1717 1779 .. 0.64 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00013 DUF1664 35 TrrslsdavasvskqleqvseslaatkrhLsqridrv 71 T r++++a++s+s+++eq e +++ k++ + i++ T163778_2 1054 TLREMQNALESLSNRIEQAEERISELKDKVFKLIQSD 1090 7899***********************9999888865 PP == domain 2 score: 1.3 bits; conditional E-value: 0.036 DUF1664 62 rhLsqridrvdkklde.....qkeiskeikeevtevredlseikedvesvke 108 + L+++id++ ++l+e q++ + + ++e+t++r +l+ei+++ ++++ T163778_2 1720 KSLKKQIDNLRSHLKElekkeQTKPKPSRRKEITKIRVELNEIETKKIQIQK 1771 5677777777776665110003333445688999999999998877666665 PP >> Sas10_Utp3 Sas10/Utp3/C1D family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.3 0.052 4.2e+02 1 21 [. 1062 1082 .. 1048 1100 .. 0.60 2 ? 7.7 1.3 0.0006 4.9 2 38 .. 1720 1774 .. 1720 1778 .. 0.69 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.052 Sas10_Utp3 1 Leslsksldeleeslepllsk 21 Lesls+ ++++ee + +l++k T163778_2 1062 LESLSNRIEQAEERISELKDK 1082 455666666666666666554 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0006 Sas10_Utp3 2 eslsksldeleeslepllskakaee.....kel..............gisllslKn 38 +sl+k++d+l+++l++l +k++ + k + +i+++++K+ T163778_2 1720 KSLKKQIDNLRSHLKELEKKEQTKPkpsrrK-EitkirvelneietkKIQIQKIKL 1774 689****************866666554431.124455555666777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1074 (0.0658653); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.59 # Mc/sec: 12820.40 // Query: T163778_3 [L=2643] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-52 176.1 2.4 1.4e-51 175.4 2.4 1.2 1 Transposase_22 L1 transposable element 3.4e-14 52.8 0.1 5.2e-14 52.2 0.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.4 2.4 1.7e-55 1.4e-51 166 331 .. 1090 1254 .. 1087 1268 .. 0.94 Alignments for each domain: == domain 1 score: 175.4 bits; conditional E-value: 1.7e-55 HHHHHHHHHHHHHHHHHHHHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EE..EEEEESSSS-TSSSS--EEEEEE CS Transposase_22 166 vkerekrkkileqslqviqdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiq..eiyrtPnrqdskrassrhiivrt 255 +k ++k k+++qs +++d+v + Pnlr+i v e+e e+ k leni++ ii+enfP l+++ + iq e++rtP ++ kr+s+rhi++r+ T163778_3 1090 TKTNTKELKKNKQSPPELWDYV-K*PNLRIISVLEEE-EKSKSLENIFEGIIKENFPSLARN--LDIQi*EAQRTPGKFITKRSSPRHIVIRL 1178 699******************9.999*******9976.6889******************96..5688888********************** PP SSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHH.HHHHHHHHHHTT---EEETTTEEEEESSSSEEEE CS Transposase_22 256 tkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarre.wtdviqilkekkfqPrllyPaklsiiidGeikvf 331 +kv++k+ +l+avr+k +vt+kGkPi ltad+saetl+a re +++ +lk++++qPr+lyPakls+i +G i +f T163778_3 1179 SKVNMKETVLRAVRQKHQVTYKGKPIILTADFSAETLQAGRE*G-PIFSLLKQNNYQPRILYPAKLSFINEGKIVFF 1254 ***************************************99554.9****************************988 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 0.1 6.4e-18 5.2e-14 106 209 .. 2041 2157 .. 2039 2175 .. 0.91 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 6.4e-18 ..................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHH CS RVT_1 106 ksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlke 193 ks++ ++++++ +ng++ + ++ ++++qG+ lS l fn++++ l r +r++ ++v+l+++a D++++ ++ +++ + le + e+ k T163778_3 2041 KSYYDKPTANIILNGKKLKAFPLRTRTRQGCSLSRLRFNIVLEVLARAIRQEKeikgiliskEEVKLSLFANDMIVYLENsNNSSRKFLEPINEFSKV 2138 799*************99*********************************99***************************7888************** PP TT--BEGGG-EEE...... CS RVT_1 194 sglkinpeKtklvlf...s 209 sg+kin++K+ ++l+ + T163778_3 2139 SGYKINEHKSVALLYtnsD 2157 ***********99874430 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2643 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.93u 0.26s 00:00:01.19 Elapsed: 00:00:00.54 # Mc/sec: 14002.17 // Query: T165313_1 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 5880.60 // Query: T165313_2 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 6480.66 // Query: T165313_3 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.50 # Mc/sec: 6345.32 // Query: T229250_1 [L=2398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2398 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 470 (0.0288237); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 12704.20 // Query: T229250_2 [L=2397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.029 14.4 0.3 0.029 14.4 0.3 2.0 2 Toxin_13 Neurotoxin B-IV-like protein Domain annotation for each model (and alignments): >> Toxin_13 Neurotoxin B-IV-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.3 1.8e-06 0.029 4 29 .. 867 892 .. 866 895 .. 0.92 2 ? -4.7 1.7 1 1.6e+04 37 49 .. 2241 2253 .. 2238 2254 .. 0.82 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.8e-06 Toxin_13 4 twGaayPacenncrkkyddcikcqGk 29 wGa+ Pa n cr + ++c cq + T229250_2 867 VWGASCPAPHNPCRLQLELCGPCQKR 892 5**********************976 PP == domain 2 score: -4.7 bits; conditional E-value: 1 Toxin_13 37 caahcivqktsck 49 a c v+k++c+ T229250_2 2241 VEACCCVRKEECN 2253 5689********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.53 # Mc/sec: 12938.51 // Query: T229250_3 [L=2397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.53 # Mc/sec: 12938.51 // Query: T257531_1 [L=590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 3444.67 // Query: T257531_2 [L=590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.63 # Mc/sec: 2679.19 // Query: T257531_3 [L=589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.59 # Mc/sec: 2855.98 // Query: T002033_1 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.64 # Mc/sec: 9869.86 // Query: T002033_2 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.70 # Mc/sec: 9023.88 // Query: T002033_3 [L=2208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2208 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.60 # Mc/sec: 10527.85 // Query: T080932_1 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 2931.00 // Query: T080932_2 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 2773.98 // Query: T080932_3 [L=543] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-88 296.4 18.7 1.3e-87 294.0 18.7 2.0 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.045 14.2 4.3 0.11 12.9 4.3 1.6 1 Adaptin_binding Alpha and gamma adaptin binding protein p34 0.12 11.3 2.0 0.17 10.8 2.0 1.2 1 ArAE_2_N Putative ER transporter, 6TM, N-terminal 0.15 12.5 9.7 0.14 12.6 5.8 2.5 2 Syntaxin-6_N Syntaxin 6, N-terminal 3.2 7.9 7.7 0.99 9.5 2.3 2.6 2 XhlA Haemolysin XhlA Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 294.0 18.7 3.9e-91 1.3e-87 9 324 .. 256 542 .. 248 543 .] 0.92 Alignments for each domain: == domain 1 score: 294.0 bits; conditional E-value: 3.9e-91 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.............. CS Transposase_22 9 nrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd..fykelkelieskakele.alkekeentekqlkiikekqentskqvm 100 ++k +nsk +++ +P+k++ss Pa e++ ++df+el + +++k+ +++elke++ ++ ke + +k ++e + v T080932_3 256 EQKAENSKNQNAPSPPKDRSSLPAM--EQSRTENDFDELTEVGLRKSviNFSELKEDVPTHHKEAKnLEKRLDEQLTRISS------------VE 336 67899********************..*******************97789*************87666777665554443............33 PP ....XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE CS Transposase_22 101 emnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkrPnlrl 194 + ++++elkt ++el + + s+ss+ d++eervs +ed+i+e++ e k+rekr+k++eqslq+i+++vkr nl l T080932_3 337 KTLNDMMELKTMARELCDACT------------------SFSSQFDQVEERVSVIEDQINEMK*EE-KFREKRVKRNEQSLQEIWEYVKRKNLHL 412 334589**************9..................9**********************7776.9*************************** PP ES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS.-EEETTEEEEEEE--- CS Transposase_22 195 iGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekG.rvtlkGkPirltadls 288 iGv es+ e+++klen+l++ii++ f nl+++an++iqei+r+P+r++ ++a++rhiivr+tkv++k+k+l+a+rekG t kG Pirlt dls T080932_3 413 IGVSESDGENGTKLENTLQDIIQDTFSNLARQANIQIQEIQRSPQRYSPRKATPRHIIVRFTKVEMKEKMLRAAREKG*V-THKGNPIRLTVDLS 506 ****************************************************************************9665.99************ PP HHHHHHHHHHHHHHHHH.HHTT---EEETTTEEEEES CS Transposase_22 289 aetlkarrewtdviqil.kekkfqPrllyPaklsiii 324 aetl+ar +w++v+++l k+fqPr++yPakls+i+ T080932_3 507 AETLQARIDWGPVFNML*E-KNFQPRISYPAKLSFIS 542 ***************7554.89*************97 PP >> Adaptin_binding Alpha and gamma adaptin binding protein p34 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 4.3 3.5e-05 0.11 38 108 .. 238 354 .. 175 358 .. 0.68 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3.5e-05 Adaptin_binding 38 t.......eadeaqlekeeeeqdpsqpastepdksaaesesadaef.......................................lfggdeaar 85 + + ++ ek+e + s+++ + + + +s +a ++ + r T080932_3 238 SqsskskgRYNHKDGEKPEQKAENSKNQNAPSPPKDRSSLPAMEQSrtendfdeltevglrksvinfselkedvpthhkeaknleK-------R 324 03222233333344444444444444443333333333333322225677889999999*********999999777744333332.......3 PP Adaptin_binding 86 le.......dlesllsklqqakdnvrnlpd 108 l+ ++e++l+ ++++k ++r+l d T080932_3 325 LDeqltrisSVEKTLNDMMELKTMARELCD 354 336677777******************977 PP >> ArAE_2_N Putative ER transporter, 6TM, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 2.0 5.2e-05 0.17 247 409 .. 280 453 .. 269 475 .. 0.77 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 5.2e-05 ArAE_2_N 247 latlepsnese...........lnfkklekditkirslypkleavlsflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravvl.kser 334 +++++ +n+++ nf++l++d+ ++ ++le l + +s +++d++el++ r l + ++++ +d +ee+++v+ ++++ T080932_3 280 MEQSRTENDFDeltevglrksvINFSELKEDVPTHHKEAKNLEKRLDEQLTRISSVEKTLNDMMELKTMARELCDACTSFSSQFDQVEERVSVIEdQINE 379 555555555557788888888899******************************************************************9977753333 PP ArAE_2_N 335 ssklar...nshaklfseieksyrevgeyelkksiklleardeqrsltvsdldeva.ealrelsaelleeveegleviv 409 + + +k+ ++ e+s +e+ ey +k++ l+ +e + + +l+++ +++++++l +++ ++ i T080932_3 380 M----K*eeKFREKRVKRNEQSLQEIWEYVKRKNLHLIGV-SESDGENGTKLENTLqDIIQDTFSNLARQANIQIQEIQ 453 2....25433334666666677799999999988888886.44455555555555425667788888888887777775 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 5.8 4.3e-05 0.14 3 96 .. 304 406 .. 303 409 .. 0.79 2 ? 1.2 1.2 0.15 4.9e+02 19 66 .. 397 447 .. 388 481 .. 0.58 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.3e-05 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek..npsk..fkidekelsrrrafvee 90 F e ke+V +++++l +r+ +++ +++++ + el+ +eL a+ s + + +++ee v+++e n+ k k +ek ++r ++ ++e T080932_3 304 FSELKEDVPTHHKEAKNLEKRLdeqlTRISSVEKTlNDMMELKTMARELCDACTSFSSQFDQVEERVSVIEDqiNEMK*eEKFREKRVKRNEQSLQE 400 778899998888888888888854444666666666699*******************************984544556567788888888888887 PP Syntaxin-6_N 91 vreevk 96 + e vk T080932_3 401 IWEYVK 406 776665 PP == domain 2 score: 1.2 bits; conditional E-value: 0.15 Syntaxin-6_N 19 slyrrweelledtss..stseeldetrteLrkalrsiewd.ledLeetvri 66 sl + we +++++ + se+ e t+L+++l++i +d ++L + +i T080932_3 397 SLQEIWEYVKRKNLHliGVSESDGENGTKLENTLQDIIQDtFSNLARQANI 447 33344444333333333368888899999******9988746777665543 PP >> XhlA Haemolysin XhlA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 2.3 0.0003 0.99 9 45 .. 307 343 .. 305 347 .. 0.80 2 ? -0.1 0.3 0.31 1e+03 2 16 .. 366 380 .. 360 406 .. 0.59 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0003 XhlA 9 ietkldnleervdkleekaaeaeekiknleedlkkie 45 +++++ ++ ++ + le++ +e++++i ++e++l+++ T080932_3 307 LKEDVPTHHKEAKNLEKRLDEQLTRISSVEKTLNDMM 343 566666777777777778****************986 PP == domain 2 score: -0.1 bits; conditional E-value: 0.31 XhlA 2 ikerlerietkldnl 16 ++er+ ie +++++ T080932_3 366 VEERVSVIEDQINEM 380 334444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1260 (0.0772722); expected 326.1 (0.02) Passed bias filter: 357 (0.0218938); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 2876.72 // Query: T357406_1 [L=3645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 18294.26 // Query: T357406_2 [L=3645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-07 29.0 1.3 5.3e-07 29.0 1.3 1.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.37 6.1e+03 9 16 .. 108 115 .. 108 116 .. 0.81 2 ! 29.0 1.3 3.2e-11 5.3e-07 1 18 [. 951 968 .. 951 968 .. 0.95 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.37 DUF1725 9 LEnIILSE 16 LE+I+ ++ T357406_2 108 LEEIMTKN 115 9****666 PP == domain 2 score: 29.0 bits; conditional E-value: 3.2e-11 DUF1725 1 kFagKWMELEnIILSEis 18 +Fa++WMELE+IILS+ + T357406_2 951 SFAATWMELETIILSKLT 968 7**************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.71 # Mc/sec: 14686.94 // Query: T357406_3 [L=3645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.70 # Mc/sec: 14896.75 // Query: T007021_1 [L=7834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-11 42.1 0.0 1.2e-10 41.3 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 7.4e-15 1.2e-10 60 106 .. 672 718 .. 660 722 .. 0.90 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 7.4e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007021_1 672 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 718 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.26u 0.45s 00:00:02.71 Elapsed: 00:00:00.81 # Mc/sec: 27668.82 // Query: T007021_2 [L=7834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-05 22.8 0.0 7.2e-05 22.3 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 4.4e-09 7.2e-05 170 210 .. 95 135 .. 91 140 .. 0.88 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 4.4e-09 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeede 210 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + T007021_2 95 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGP 135 789*******************************9886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.29u 0.44s 00:00:02.73 Elapsed: 00:00:00.87 # Mc/sec: 25760.62 // Query: T007021_3 [L=7833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.40u 0.51s 00:00:02.91 Elapsed: 00:00:01.06 # Mc/sec: 21140.45 // Query: T294832_1 [L=2009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-22 78.3 0.0 9e-22 77.7 0.0 1.2 1 RNase_H RNase H 1.4e-07 31.6 0.1 3e-07 30.5 0.1 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger 6.5e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.7 0.0 1.7e-25 9e-22 5 142 .. 541 682 .. 538 683 .. 0.84 Alignments for each domain: == domain 1 score: 77.7 bits; conditional E-value: 1.7e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH..HHTTSSSETTSSBHT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw..kknawkttseqkpvk 99 +Y+DGs++ n +ge++ag+ v+ + + +pl++ +++++aEL+A++ aL+ ++++vniy DS+Y++ +++ vh++ k++a +s +k++k T294832_1 541 ELYVDGSSFINpQGERCAGCaVVTLD-DVIEDKPLPHGTSAQKAELIALTRALElR--EGKTVNIYPDSRYAFLTLQ--VHGAlyKEKAL-LNSGGKDIK 634 68*********99999****777766.3466699*******************955..9**************9555..56662144444.5888899*9 PP T.HHHHHHHHHCHCSSEEEEEE-SCC..SSS...CHHHHHHHHHHHHHH CS RNase_H 100 n.kelaellkelakkkkvqlkhvkgH..aGd...pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv ++h++gH a ++gN + D A++aa T294832_1 635 YqQEILQLLEAVWKPQKVAVMHCRGHlqA-StsvSQGNSRTDTEAQKAA 682 889***********************752.246789**********997 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.1 5.5e-11 3e-07 1 36 [. 748 783 .. 748 784 .. 0.98 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 5.5e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCk 36 H++tHlG++ l++ll+r++++ ++ +++++V+++C+ T294832_1 748 HETTHLGQESLEKLLSRYFYISHLPALAKTVARRCT 783 9**********************************7 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 2e-08 0.00011 26 94 .. 821 890 .. 819 897 .. 0.84 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 2e-08 rve 26 llvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytsk...afreflaelgirv 94 ++v + ++s++i +++++e +a +v+++l r + ++g p+r+ sDng++ ++ ++++f l++++ T294832_1 821 FTVLVCTYSGWIESYPTRTE-KACEVTRVLLRDLIPRFGL-PLRIGSDNGPASVADlvqRTAKFTLFLQVTM 890 67999***************.*******************.***********99886665555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.60 # Mc/sec: 9579.01 // Query: T294832_2 [L=2008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-19 70.7 0.0 2.6e-19 69.5 0.0 1.7 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.5 0.0 1.6e-23 2.6e-19 1 222 [] 44 216 .. 44 216 .. 0.87 Alignments for each domain: == domain 1 score: 69.5 bits; conditional E-value: 1.6e-23 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p+ + ++ ++ +++ lDlk+aF+s++l+ +++kl+af+ +++ T294832_2 44 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTAPNPYTLLGL------------LLAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDP 118 69*********7....7***********.........99999999999666............56899******************************66 PP .......................TEE..EEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHH...HHHHTT CS RVT_1 101 linliksflstrsfsvrvngeesegr..yekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleavee...wlkesg 195 s+ y++++lpqG+++SP++f ++ + l+++ + g+ ll+Y+DD+l+ + + + + + + +l+++g T294832_2 119 ---------------------GSGVTt*YTWTRLPQGFKNSPTIFGEALARDLQKFPAKDLGCILLQYVDDLLLGDSMADG---CAKGTDAll*HLEDCG 194 .....................34555688*********************9999999999************997666444...444444422558**** PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ +++v+yLG+t+ T294832_2 195 YKVSKKKAQIC-----RQQVRYLGFTI 216 ***********.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.65 # Mc/sec: 8837.76 // Query: T294832_3 [L=2008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.71 # Mc/sec: 8090.91 // Query: T004824_1 [L=2015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-21 75.8 0.0 4.1e-21 75.4 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.4 0.0 2.5e-25 4.1e-21 1 222 [] 871 1043 .. 871 1043 .. 0.95 Alignments for each domain: == domain 1 score: 75.4 bits; conditional E-value: 2.5e-25 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS-.-EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkka.klllklDlkkaFdsvpleellrkltafkv 97 +pK+g+++yR+i d+ ++n++++ l++ p+ + l+ + + +++ l lk+aF+s++l+ +++kl+af+ T004824_1 871 VPKPGTKDYRLI----QDLHLVNQATVT---------LHPTVPNPYTL-------------LWLLPAEdSWFTYLGLKDAFFSIRLAPESQKLFAFQW 942 69*********9....8***********.........99999999999.............55555555***************************** PP T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS RVT_1 98 ptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 +++ g+ +++y+++ lpqG+++S ++f ++ + l+++ +r g++ll+Y+DD+l+ + + + ++++ +l+++g T004824_1 943 EDP-------------------GSGVTTQYTWTQLPQGFKNSTTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCG 1021 *98...................7788************************************************************************ PP --BEGGG-EEE.....ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlfsgkseevkyLGvtl 222 +k++++K +++ ++ev+yLG+t+ T004824_1 1022 YKVSKKKAQIC-----QQEVRYLGFTI 1043 ***********.....9********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2015 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 8603.84 // Query: T004824_2 [L=2014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-19 68.1 1.7 4.2e-16 59.0 0.8 2.1 2 Gag_p30 Gag P30 core shell protein 6.3e-13 48.4 0.3 1.6e-12 47.1 0.0 1.8 2 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.0 0.8 5.1e-20 4.2e-16 2 96 .. 401 496 .. 400 504 .. 0.90 2 ! 7.8 0.0 0.00024 2 174 210 .. 572 608 .. 568 609 .. 0.93 Alignments for each domain: == domain 1 score: 59.0 bits; conditional E-value: 5.1e-20 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpne.vdeafpltrpdwdy 96 y f+ +dl n k+n ps++ +pq++ l+++i+ th+ptw dc q+l l+ t+er+rvl a k ++ + q p+e v +p t p+wd T004824_2 401 YQLFTPTDLLNRKNNTPSYTGKPQAIIDLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEyVRIQLPGTDPQWDP 496 667999************************************************************99877666666655448899********95 PP == domain 2 score: 7.8 bits; conditional E-value: 0.00024 Gag_p30 174 aqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 q++ dir+klq+ g+ ++++++l+ a++v+ r+ T004824_2 572 SQTTEDIRRKLQKQAGFVGMNMSQLLEIANQVFVNRD 608 6999*****************************9886 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.1 0.0 2e-16 1.6e-12 31 105 .. 210 281 .. 198 305 .. 0.82 2 ? -3.2 0.1 0.69 5.6e+03 37 51 .. 1012 1026 .. 1007 1027 .. 0.85 Alignments for each domain: == domain 1 score: 47.1 bits; conditional E-value: 2e-16 HHHHHHHHHTT.GGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXXXXXX CS Gag_MA 31 kkklitlCsse.WptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflpskpl 105 +kl+tlC+ + +l+vgWP+eG+ d ++++kv +kv + G+ Dq pYi tW +Lv dPP vk +s+++ T004824_2 210 LGKLRTLCEID*A-ALEVGWPTEGSLDRSLVSKVWHKVTGK---GYLDQFPYIDTWLQLVLDPPTVVKRIGSSNTS 281 5677777765333.79**********************966...***********************998777665 PP == domain 2 score: -3.2 bits; conditional E-value: 0.69 HHHTTGGGGSSS--T CS Gag_MA 37 lCsseWptlnvgWPr 51 Cs W t+++++Pr T004824_2 1012 PCSGTWRTVGIRYPR 1026 5999*********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.76 # Mc/sec: 7581.20 // Query: T004824_3 [L=2014] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-19 69.2 0.0 8.4e-19 68.0 0.0 1.5 1 RNase_H RNase H 7.5e-15 54.9 0.0 1.2e-14 54.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 7.7e-11 42.0 0.0 1.6e-10 41.0 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.0 0.0 1.6e-22 8.4e-19 5 138 .. 1291 1428 .. 1288 1428 .. 0.86 Alignments for each domain: == domain 1 score: 68.0 bits; conditional E-value: 1.6e-22 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHH.HHTTSSSETTSSBH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrw.kknawkttseqkpv 98 +Y D s++ n +ge++ag+ v+ + a + +++l++ +++++ L+A+i aL+ + ++++vniytDS+Y++ +++ vh++ k++ + +s +k++ T004824_3 1291 ELYMDRSSFVNpQGERCAGYaVVTLD-AVTEAKSLPQDTSAQKVKLIALIWALElS--EGKTVNIYTDSRYAFLTLQ--VHGAlYKEKGPLKSGGKDI 1383 68*********89999****766766.668999999******************55..9**************9554..56653455666899999** PP TT.HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlA 138 k +e+ +l++++ k++kv ++h++gH+ + gN +aD+ A T004824_3 1384 KYqQEILQLVEAVWKPQKVAVMHCRGHQRAstsiALGNSQADSEA 1428 *889***********************655567778******865 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.2 0.0 2.2e-18 1.2e-14 102 174 .. 501 573 .. 490 586 .. 0.89 Alignments for each domain: == domain 1 score: 54.2 bits; conditional E-value: 2.2e-18 Gag_p30 102 reslklyrqlllaglrgaarrptnlakvkevvq.gkeespaaflerlkeayrrytpydpedpeqkasvalsfia 174 ++l+ yr++ll gl+ a++ tn+ kv ev gk+espa f erl eay +ytp+dp++pe+++ +++++++ T004824_3 501 MQRLNRYREALLEGLKKGAQKATNVNKVSEV-I*GKDESPAQFYERLCEAYPMYTPFDPDSPENQCMITMALVK 573 567899**********************996.7779**********************************9986 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.0 0.0 2.9e-14 1.6e-10 13 100 .. 726 808 .. 718 809 .. 0.92 Alignments for each domain: == domain 1 score: 41.0 bits; conditional E-value: 2.9e-14 TEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 13 gkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 g+ ie+l+ tGA+++v++ P + k++ + G++g ++++ ++ ++ ++++ ++l + ++p++llGrdlL+kl++++ T004824_3 726 GQNIEFLVNTGAEHSVVTTPVAPLS----KKTIDIIGATGVLaKQAFCLPQTCTIGGHEVTY--QFLYMLDCPLPLLGRDLLSKLKATI 808 5789*********************....9999999**999978889999999999999999..9999999***************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2014 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.68 # Mc/sec: 8473.11 // Query: T051666_1 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 409 (0.0250828); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.35s 00:00:01.84 Elapsed: 00:00:00.78 # Mc/sec: 13401.89 // Query: T051666_2 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 406 (0.0248988); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.32s 00:00:01.81 Elapsed: 00:00:00.72 # Mc/sec: 14518.71 // Query: T051666_3 [L=3654] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3654 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 382 (0.023427); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.41s 00:00:01.97 Elapsed: 00:00:00.87 # Mc/sec: 12015.49 // Query: T171029_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 2754.70 // Query: T171029_2 [L=596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 3044.74 // Query: T171029_3 [L=596] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (596 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 3044.74 // Query: T150317_1 [L=1349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 6770.63 // Query: T150317_2 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7011.63 // Query: T150317_3 [L=1348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1348 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 6220.00 // Query: T189085_1 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.61 # Mc/sec: 6124.99 // Query: T189085_2 [L=1306] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.63 10.1 14.0 0.23 11.5 10.1 2.4 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 10.1 1.4e-05 0.23 2 18 .] 10 26 .. 9 26 .. 0.94 2 ? -1.7 0.1 0.2 3.3e+03 11 17 .. 41 47 .. 41 48 .. 0.89 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.4e-05 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 C++C++ GH+ ++Cp+ T189085_2 10 CCFKCQKSGHWCKECPQ 26 6***************7 PP == domain 2 score: -1.7 bits; conditional E-value: 0.2 STTTTST CS zf-CCHC 11 HiardCp 17 H++ dCp T189085_2 41 HWKLDCP 47 9999**9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1306 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 6332.62 // Query: T189085_3 [L=1305] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-51 176.1 3.0 1.6e-51 175.6 3.0 1.1 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 175.6 3.0 9.6e-56 1.6e-51 334 561 .] 614 835 .. 569 835 .. 0.90 Alignments for each domain: == domain 1 score: 175.6 bits; conditional E-value: 9.6e-56 XXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXXX...XXXXXXXXX.XXHHHHHH CS TLV_coat 334 lvapngtvfacntgltpclstallnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGLgiaa...gvgtGttgl.vstqqfkk 428 + ++g +f+c+ ++ l++++ + C l+ l P+i++++g+ + + t++kR + l++ L+GLg++a ++gtG++g+ s+++f++ T189085_3 614 FCLTQGLFFLCGSST----YMCLPAKWMGTCTLVFLTPKIQFADGNeQLLVPLMTPTQQKR---VIPLIPTLVGLGLSAstiALGTGIAGIsTSVTTFRS 706 677889999999765....699**********************998777777889999**...89*********7766333789*************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHH..H-XXXX.XXXXXXXX CS TLV_coat 429 LqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrll..ednqlwfegllglsp 526 L++ + v +++++s l+ +++sla vvl N GLDlL++e+GGlC L+EeCCFy ++sg+v d+i+kL++r ++ + + ++ w l + T189085_3 707 LSNDFSASVTDISQTLSVLQAQVDSLAAVVLRNCQGLDLLTAEKGGLCIFLNEECCFYLNQSGLVHDNIKKLKDRAQKLTNQAnnYAEPPW--TLSNWMS 804 ***************************************************************************9875544400455555..799999* PP XXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 527 wlttllstilgpLlllLLiLllGPcilnrLvqlik 561 w+++ll +pL+ + L Ll+GPc++ + q+i+ T189085_3 805 WVLPLL----SPLIPIFLHLLFGPCVFHLVSQFIQ 835 ******....***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1305 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 326 (0.0199926); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.73 # Mc/sec: 5114.22 // Query: T182999_1 [L=6818] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6818 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.07u 0.37s 00:00:02.44 Elapsed: 00:00:00.81 # Mc/sec: 24080.42 // Query: T182999_2 [L=6817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 740 (0.0453821); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.48u 0.45s 00:00:02.93 Elapsed: 00:00:00.84 # Mc/sec: 23217.00 // Query: T182999_3 [L=6817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.032 14.4 0.1 3.5e+02 1.3 0.0 5.6 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.22 3.5e+03 100 121 .. 5407 5428 .. 5400 5431 .. 0.82 2 ? -1.4 0.0 0.14 2.3e+03 89 120 .. 5440 5471 .. 5417 5472 .. 0.84 3 ? 0.6 0.0 0.035 5.7e+02 89 121 .. 5484 5516 .. 5480 5522 .. 0.89 4 ? -0.1 0.0 0.058 9.4e+02 89 121 .. 5528 5560 .. 5523 5565 .. 0.89 5 ? -1.2 0.0 0.12 2e+03 94 121 .. 5577 5604 .. 5568 5607 .. 0.81 6 ? 1.1 0.0 0.026 4.2e+02 88 121 .. 5615 5648 .. 5590 5653 .. 0.86 7 ? -0.8 0.0 0.095 1.6e+03 88 121 .. 5659 5692 .. 5635 5696 .. 0.79 8 ? 1.3 0.0 0.021 3.5e+02 88 121 .. 5703 5736 .. 5680 5758 .. 0.88 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.22 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182999_3 5407 PRRQRVYVRAPESTHLAGSAFT 5428 55679***************96 PP == domain 2 score: -1.4 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182999_3 5440 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5471 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.035 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182999_3 5484 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5516 677888999999999****************96 PP == domain 4 score: -0.1 bits; conditional E-value: 0.058 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182999_3 5528 ARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5560 677888999999999****************96 PP == domain 5 score: -1.2 bits; conditional E-value: 0.12 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182999_3 5577 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5604 56677777889***************96 PP == domain 6 score: 1.1 bits; conditional E-value: 0.026 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182999_3 5615 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5648 57788899999999******************97 PP == domain 7 score: -0.8 bits; conditional E-value: 0.095 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182999_3 5659 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5692 56666677777778889***************96 PP == domain 8 score: 1.3 bits; conditional E-value: 0.021 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182999_3 5703 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5736 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6817 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.97u 0.46s 00:00:02.43 Elapsed: 00:00:00.88 # Mc/sec: 22161.68 // Query: T064376_1 [L=2393] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-22 79.2 0.5 3.6e-22 78.6 0.5 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.6 0.5 2.2e-26 3.6e-22 259 348 .. 2121 2209 .. 2112 2209 .. 0.93 Alignments for each domain: == domain 1 score: 78.6 bits; conditional E-value: 2.2e-26 HHHHHHHHHHHHH.S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHH CS Transposase_22 259 lnkdkilkavrek.GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalk 348 ++++i ka+rek + +kG irl+ad+s+etl+arr+w d + kek++q r+ly ak s+ ++ eik f dk+kl+++ ++rPal+ T064376_1 2121 SQRHRISKAAREK*L-IVYKGSSIRLSADFSSETLEARRQWDDKVLKEKEKNCQSRILYLAKPSFKSEEEIKTFPDKQKLKEF-TIRPALQ 2209 56789999***9887.56*************************99999**********************************9.89***97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2393 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.65 # Mc/sec: 10532.26 // Query: T064376_2 [L=2392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.64 # Mc/sec: 10692.35 // Query: T064376_3 [L=2392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.69 # Mc/sec: 9917.54 // Query: T367380_1 [L=2635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.34s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 10326.42 // Query: T367380_2 [L=2634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 458 (0.0280878); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.86 # Mc/sec: 8762.12 // Query: T367380_3 [L=2634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.34s 00:00:01.77 Elapsed: 00:00:00.67 # Mc/sec: 11246.90 // Query: T137627_1 [L=9601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1625 (0.0996566); expected 326.1 (0.02) Passed bias filter: 330 (0.0202379); expected 326.1 (0.02) Passed Vit filter: 185 (0.0113455); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.23u 0.63s 00:00:07.86 Elapsed: 00:00:01.71 # Mc/sec: 16062.47 // Query: T137627_2 [L=9600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1560 (0.0956703); expected 326.1 (0.02) Passed bias filter: 254 (0.0155771); expected 326.1 (0.02) Passed Vit filter: 143 (0.00876978); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.31u 0.53s 00:00:05.84 Elapsed: 00:00:01.21 # Mc/sec: 22697.49 // Query: T137627_3 [L=9600] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9600 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 808 (0.0495523); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.16u 0.55s 00:00:04.71 Elapsed: 00:00:01.02 # Mc/sec: 26925.46 // Query: T138316_1 [L=1336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 5539.23 // Query: T138316_2 [L=1336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.67 # Mc/sec: 5704.58 // Query: T138316_3 [L=1335] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1335 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.54 # Mc/sec: 7072.61 // Query: T346741_1 [L=2210] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-35 121.2 1.9 7.1e-35 120.4 1.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 5.7e-14 51.6 14.6 2.8e-07 29.6 2.9 2.2 2 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.028 14.2 0.1 0.063 13.1 0.1 1.6 1 HSBP1 Heat shock factor binding protein 1 Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.4 1.9 1.3e-38 7.1e-35 31 210 .. 1791 1983 .. 1782 2001 .. 0.93 Alignments for each domain: == domain 1 score: 120.4 bits; conditional E-value: 1.3e-38 .......-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................T CS RVT_1 31 kdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeese 124 +++++kl++++q f pg + + ++ ++++++++ + k ++++++D +kaFd+++l+++l++l+++ ++ + +++i++++ ++++++ +n ++ e T346741_1 1791 QQHIKKLINHDQASFIPGMQDWFNIcksiNVIHRINRTNEKTHMIISIDAEKAFDKIQLPFVLKTLNKLVINGMYLKIIRAIYDKPTANIILNAQKLE 1888 678888899999999999888888898889999998889999*****************************************************99* PP EEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsg 210 ++ ++g+ qG++lSPllfn++++ l r ++++ ++v+l+++aDD++++ ++ ++q+ll+ +++ k sg+k+n +K++++l+++ T346741_1 1889 AFPLQTGTGQGCPLSPLLFNIVLEVLARAISQEKeiksvqigrEEVKLSLFADDMIVYLENIVSAQKLLKLISNVSKVSGYKMNVQKSQAFLYTN 1983 ********************************99*********************************************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.6 2.9 5.2e-11 2.8e-07 6 83 .. 1042 1127 .. 1037 1139 .. 0.79 2 ! 27.5 3.9 2.2e-10 1.2e-06 145 182 .. 1153 1190 .. 1153 1194 .. 0.96 Alignments for each domain: == domain 1 score: 29.6 bits; conditional E-value: 5.2e-11 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntek 83 + +k +ns +++s+P+k+++s Pa e+++++++f+el + ++++ + +elke + ++ke + + ++e ek T346741_1 1042 KNQRKKAENSINQNASSPPKDHNSLPAR--EQNWMENEFDELTEVGFRRwviTNSSELKERVLIQCKEAKkLYQRLQEllsriaSLEK 1127 34567899*******************9..******************96666899******99***999677778885544443333 PP == domain 2 score: 27.5 bits; conditional E-value: 2.2e-10 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqv 182 id+ eer+s +ed+++ei++e k rekrkk++eqslq+ T346741_1 1153 IDQTEERISETEDQLNEIKHEDKIREKRKKRNEQSLQK 1190 799*********************************97 PP >> HSBP1 Heat shock factor binding protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 1.2e-05 0.063 24 48 .. 1110 1134 .. 1108 1137 .. 0.91 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 1.2e-05 HSBP1 24 qilsriDdMssriDdLEksiadlmt 48 ++ +r+ ++ sri +LEk+++dlm+ T346741_1 1110 KLYQRLQELLSRIASLEKNVNDLME 1134 6789********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2210 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 856 (0.052496); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:00.77 # Mc/sec: 8210.95 // Query: T346741_2 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.64 # Mc/sec: 9874.33 // Query: T346741_3 [L=2209] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-64 216.1 8.9 2.1e-57 194.5 5.4 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.5 5.4 1.3e-61 2.1e-57 179 299 .. 1186 1306 .. 1177 1314 .. 0.94 2 ! 22.9 0.1 1.9e-09 3.1e-05 340 367 .. 1349 1378 .. 1347 1379 .. 0.96 Alignments for each domain: == domain 1 score: 194.5 bits; conditional E-value: 1.3e-61 HHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 179 slqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrek 271 + +i+d vkrPnl liGv+es+ e+ +lenil++i++enfP l+++an++iqe +rtP+r++s+r+++rhii+r+tkv++k+kil ++rek T346741_3 1186 KPPEIWDNVKRPNLHLIGVPESDGENRARLENILQDIMQENFPSLARQANIQIQETQRTPQRYSSRRETPRHIIIRFTKVEMKEKILTTAREK 1278 4469***************************************************************************************** PP S-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewt 299 G+v k kPirltadlsaetl+arrew+ T346741_3 1279 GKVNHKWKPIRLTADLSAETLQARREWG 1306 ***************************8 PP == domain 2 score: 22.9 bits; conditional E-value: 1.9e-09 HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trPal++llke ++erk+ryq+l+++ T346741_3 1349 FVTTRPALQELLKEapNMERKNRYQPLQKH 1378 9***************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2209 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 11702.91 // Query: T080918_1 [L=4430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-07 30.2 0.6 4.9e-07 29.1 0.6 1.7 1 DUF1725 Protein of unknown function (DUF1725) 4.3e-07 29.5 0.5 6.8e-07 28.9 0.5 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.6 6e-11 4.9e-07 1 19 [] 2723 2741 .. 2723 2741 .. 0.98 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 6e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+++WM+LE+IILS+ sQ T080918_1 2723 SFVATWMKLETIILSKLSQ 2741 7*****************9 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.5 8.4e-11 6.8e-07 1 46 [. 2001 2051 .. 2001 2062 .. 0.92 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 8.4e-11 EE-TT......S-EEE......-THHHHCTB--.........-------HH CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfr 46 ipK++ ++++Rpisl+++ +k+lnk++a+r++++++kl++++q+ f T080918_1 2001 IPKPNrdttkKENFRPISLMNIYVKILNKMLANRIQQHIKKLIHQDQVSFT 2051 789989999999***********************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.54 # Mc/sec: 23469.40 // Query: T080918_2 [L=4429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-108 362.6 16.9 3.8e-108 361.5 16.9 1.5 1 Transposase_22 L1 transposable element 9.5e-30 103.6 0.6 1.8e-29 102.7 0.6 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.5e-09 38.0 0.0 3.2e-09 36.9 0.0 1.6 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 4.8e-06 26.3 1.8 1.2e-05 25.1 1.8 1.7 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 361.5 16.9 9.3e-112 3.8e-108 9 368 .] 1120 1452 .. 1113 1452 .. 0.93 Alignments for each domain: == domain 1 score: 361.5 bits; conditional E-value: 9.3e-112 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............ CS Transposase_22 9 nrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkd..fykelkelieskakele.alkekeentekqlkiikekqentskq 98 ++k +nsk +++ +P+k++ss Pa e++ ++df+el + +++k+ +++elke++ ++ ke + +k ++e + T080918_2 1120 EQKAENSKNQNAPSPPKDRSSLPAM--EQSRTENDFDELTEVGLRKSviNFSELKEDVPTHHKEAKnLEKRLDEQLTRISS------------ 1198 67899********************..*******************97789*************87666777665554443............ PP ......XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTT CS Transposase_22 99 vmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeid.revkerekrkkileqslqviqdtvkrP 190 v + ++++elkt ++el + + s+ss+ d++eervs +ed+i+e++ e k+rekr+k++eqslq+i+++vkr T080918_2 1199 VEKTLNDMMELKTMARELCDACT------------------SFSSQFDQVEERVSVIEDQINEMK*EE-KFREKRVKRNEQSLQEIWEYVKRK 1272 33334589**************9..................9**********************7776.9*********************** PP EEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS.-EEETTEEEE CS Transposase_22 191 nlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekG.rvtlkGkPir 282 nl liGv es+ e+++klen+l++ii++ f nl+++an++iqei+r+P+r++ ++a++rhiivr+tkv++k+k+l+a+rekG t kG Pir T080918_2 1273 NLHLIGVSESDGENGTKLENTLQDIIQDTFSNLARQANIQIQEIQRSPQRYSPRKATPRHIIVRFTKVEMKEKMLRAAREKG*V-THKGNPIR 1364 ********************************************************************************9665.99****** PP EEE---HHHHHHHHHHHHHHHHH.HHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 283 ltadlsaetlkarrewtdviqil.kekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 lt dlsaetl+ar +w++v+++l k+fqPr++yPakls+i++Geik f dk +lrd+++trPal++llke ++er++ yq+l++++ T080918_2 1365 LTVDLSAETLQARIDWGPVFNML*E-KNFQPRISYPAKLSFISEGEIKSFTDKLMLRDFVTTRPALQELLKEalNMERNNWYQPLQKHA 1452 *********************7554.89**********************************************************996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.7 0.6 4.5e-33 1.8e-29 77 222 .] 2083 2254 .. 2028 2254 .. 0.88 Alignments for each domain: == domain 1 score: 102.7 bits; conditional E-value: 4.5e-33 CCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEE CS RVT_1 77 kkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllr 165 +kaF++++ + l++l++++++ + +++i++++ ++++s+ +ng++ eg+ +k+g++qG++lSPllfn++++ l r ++++ +v+l++ T080918_2 2083 EKAFNKIQQPIMLKTLKKLGIDGTYLKIIRAIFDKPTASIILNGQKQEGFSSKTGTRQGCPLSPLLFNIVLEVLARAIKQEKeikdiqlgkGEVKLSL 2180 79*******************************************99*********************************99**************** PP CTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 166 YaDDililsks.keelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 +aDD++++ ++ ++q+ll+ ++++ k sg+kin +K++++l+ + +++ kyLG++l T080918_2 2181 FADDMIVYLENpIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimsELpfttATKRTKYLGIQL 2254 ***********6677***************************999999888777651155689********986 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.9 0.0 7.9e-13 3.2e-09 1 113 [] 1487 1715 .. 1487 1715 .. 0.86 Alignments for each domain: == domain 1 score: 36.9 bits; conditional E-value: 7.9e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH...........EEEEEEESSSTTSSEEEEEECSEEEEE...... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla...........dadaskfgtgkgqggvavlsrfpltsl...... 77 lt Nvng ++ ++ +la+++k++d+ v ++qE++ ++ +l+ +++ +k++++k++ gva+l++ +++ + T080918_2 1487 LTLNVNG----LNALIKRHRLANWIKNQDPSVCCIQETHLTCRDTHRLKIkgwrkiyqangKQKKKKKKKKKKKAGVAILLSDKIDFKptkikr 1576 699****....666778899*****************999998887777799*******998888899999999***********7777889** PP ................................................EEEEEE-SS..................................... CS ................................................xxxxxxxxx..................................... RF Exo_endo_phos 78 ................................................vivlGDfNa..................................... 86 i++GDfN+ T080918_2 1577 dkedhyitvkgsiqqeeltilnifapntgaprfikqvlrdiqrdldshTIIMGDFNTplsildrsmrqkvnkdiqdlnsalhqadlidiyrtlh 1670 *********************************************************9999999999999999999999999999999999888 PP .................-BEEEEEEHHHHTTEEEEEEECCH......SSB CS .................xxxxxxxxxxxxxxxxxxxxxxxx......xxx RF Exo_endo_phos 87 .................rlDrilaskelatersgvldepla......SDH 113 +D+i+ sk+l + + SDH T080918_2 1671 pkstentffsalhhtysKIDHIVRSKALLSKWKRI-----EiitnclSDH 1715 8888888888888888888**99997332222222.....1233446777 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 1.8 2.8e-09 1.2e-05 2 118 .. 1595 1718 .. 1594 1719 .. 0.82 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 2.8e-09 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i +++ p++ + + +++ l+++ ++l+s ++ii+GDfN + + + +++ ++ ++L + l++ +l + ++k++ tf s + T080918_2 1595 TILNIFAPNTG-APRFIKQVLRDIQRDLDS-HTIIMGDFNTPLSILDRSMRQKvNKDIQDLNSALHQADLIDIyrtLHPKSTeNTFFSALHh 1684 67888888888.778888889999999987.8**********99999987777899*************98656664444444777666666 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + + ++++SDH++i T080918_2 1685 tYSKIDHIVRSKALLSKwkRIEIITNCLSDHSAI 1718 67***************997777899*****998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 776 (0.0475898); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:00.60 # Mc/sec: 21117.69 // Query: T080918_3 [L=4429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 38 (0.00233043); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.55 # Mc/sec: 23037.48 // Query: T303732_1 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 6755.06 // Query: T303732_2 [L=1157] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1157 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6365.35 // Query: T303732_3 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6614.24 // Query: T089783_1 [L=4933] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4933 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.56 # Mc/sec: 24758.73 // Query: T089783_2 [L=4932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.60 # Mc/sec: 23516.02 // Query: T089783_3 [L=4932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.56 # Mc/sec: 24753.71 // Query: T358014_1 [L=2168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1252 (0.0767816); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.56 # Mc/sec: 11075.50 // Query: T358014_2 [L=2167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1256 (0.0770269); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.56 # Mc/sec: 10876.17 // Query: T358014_3 [L=2167] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2167 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1293 (0.079296); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.57 # Mc/sec: 10688.65 // Query: T211942_1 [L=2743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 368 (0.0225684); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:00.57 # Mc/sec: 13529.75 // Query: T211942_2 [L=2743] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2743 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 973 (0.0596713); expected 326.1 (0.02) Passed bias filter: 285 (0.0174782); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.38s 00:00:01.83 Elapsed: 00:00:00.62 # Mc/sec: 12656.87 // Query: T211942_3 [L=2742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2742 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 662 (0.0405986); expected 326.1 (0.02) Passed bias filter: 181 (0.0111002); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.57 # Mc/sec: 13524.82 // Query: T000157_1 [L=2910] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2910 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.54 # Mc/sec: 15416.69 // Query: T000157_2 [L=2909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 14600.27 // Query: T000157_3 [L=2909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 15131.19 // Query: T129489_1 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 481 (0.0294983); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 6183.79 // Query: T129489_2 [L=1124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6305.04 // Query: T129489_3 [L=1123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.066 13.2 0.0 0.11 12.4 0.0 1.2 1 DUF1325 SGF29 tudor-like domain Domain annotation for each model (and alignments): >> DUF1325 SGF29 tudor-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 6.9e-06 0.11 64 100 .. 427 464 .. 402 475 .. 0.72 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.9e-06 DUF1325 64 skakpesk.laefpkgkkVLAlY.PeTTtFYkAeVvasp 100 +ka+p+ + +a f+k++ LA P+TT+FY+A ++a+ T129489_3 427 WKANPQMDpKALFQKEQLMLA-L*PQTTCFYRALIHAPL 464 555555555666666666555.669***********975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6299.44 // Query: T369031_1 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4869.25 // Query: T369031_2 [L=834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 4869.25 // Query: T369031_3 [L=833] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (833 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4766.14 // Query: T367388_1 [L=2792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 661 (0.0405372); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.56 # Mc/sec: 14263.28 // Query: T367388_2 [L=2792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.25s 00:00:01.19 Elapsed: 00:00:00.51 # Mc/sec: 15661.64 // Query: T367388_3 [L=2791] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2791 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 530 (0.0325034); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.54 # Mc/sec: 14786.25 // Query: T276721_1 [L=1762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 9883.89 // Query: T276721_2 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 9878.28 // Query: T276721_3 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 14.5 0.0 0.017 13.9 0.0 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1e-06 0.017 282 317 .. 219 254 .. 211 258 .. 0.87 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1e-06 EEEE---HHHHHHHHHHHHHHHHHHHTT---EEETT CS Transposase_22 282 rltadlsaetlkarrewtdviqilkekkfqPrllyP 317 ++t dl++e + r +w+d+++ lkekk+ + P T276721_3 219 KITVDLTSEITQYRMQWGDILKALKEKKISTQCFIP 254 79**************************98766555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 9688.31 // Query: T001688_1 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 11931.34 // Query: T001688_2 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 11268.49 // Query: T001688_3 [L=2127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 11931.34 // Query: T106423_1 [L=3713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.55 # Mc/sec: 19313.20 // Query: T106423_2 [L=3713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.73 # Mc/sec: 14551.04 // Query: T106423_3 [L=3713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.70 # Mc/sec: 15174.66 // Query: T320359_1 [L=3725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00021 20.7 6.5 0.0011 18.4 0.1 2.5 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.5 2.5 0.0032 53 2 11 .. 2094 2103 .. 2094 2104 .. 0.91 2 ! 18.4 0.1 6.7e-08 0.0011 1 17 [. 3587 3603 .. 3587 3605 .. 0.91 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.0032 DUF1725 2 FagKWMELEn 11 F ++WME E+ T320359_1 2094 FTATWMEMET 2103 99******97 PP == domain 2 score: 18.4 bits; conditional E-value: 6.7e-08 DUF1725 1 kFagKWMELEnIILSEi 17 +Fag+WM+L +IILS+ T320359_1 3587 SFAGTWMKLQTIILSKL 3603 7**************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.42u 0.29s 00:00:01.71 Elapsed: 00:00:00.88 # Mc/sec: 12109.76 // Query: T320359_2 [L=3724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 15667.25 // Query: T320359_3 [L=3724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-27 95.0 0.0 6.8e-27 94.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.3 0.0 4.2e-31 6.8e-27 80 210 .. 2953 3093 .. 2949 3122 .. 0.93 Alignments for each domain: == domain 1 score: 94.3 bits; conditional E-value: 4.2e-31 CCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTT CS RVT_1 80 FdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaD 168 Fd+++ ++ l++l++++++ + ++lik+++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD T320359_3 2953 FDKIQQPFMLKTLNKLGIDGTYLKLIKAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFAD 3050 ******************************************99*********************************99******************* PP EEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 169 Dililsks.keelqelleaveewlkesglkinpeKtklvlfsg 210 D++++ ++ ++q ll+ +++ k sg+kin +K++++l+++ T320359_3 3051 DMIVYLENpIVSAQDLLKLISNLSKASGYKINVQKSQAFLYTN 3093 ********6677***************************8733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.39s 00:00:01.74 Elapsed: 00:00:00.82 # Mc/sec: 12992.35 // Query: T002723_1 [L=3052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.73 # Mc/sec: 11960.62 // Query: T002723_2 [L=3052] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3052 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 488 (0.0299276); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.36s 00:00:01.73 Elapsed: 00:00:00.73 # Mc/sec: 11960.62 // Query: T002723_3 [L=3051] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3051 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.66 # Mc/sec: 13224.84 // Query: T056016_1 [L=233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 1234.40 // Query: T056016_2 [L=233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 237 (0.0145345); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.59 # Mc/sec: 1129.79 // Query: T056016_3 [L=233] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (233 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.61 # Mc/sec: 1092.74 // Query: T001670_1 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1152 (0.0706488); expected 326.1 (0.02) Passed bias filter: 324 (0.01987); expected 326.1 (0.02) Passed Vit filter: 183 (0.0112229); expected 16.3 (0.001) Passed Fwd filter: 50 (0.00306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.80u 0.52s 00:00:03.32 Elapsed: 00:00:00.95 # Mc/sec: 6700.36 // Query: T001670_2 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 806 (0.0494297); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:00.74 # Mc/sec: 8601.82 // Query: T001670_3 [L=2225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1209 (0.0741445); expected 326.1 (0.02) Passed bias filter: 345 (0.0211579); expected 326.1 (0.02) Passed Vit filter: 213 (0.0130627); expected 16.3 (0.001) Passed Fwd filter: 62 (0.00380228); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.06u 0.48s 00:00:03.54 Elapsed: 00:00:00.89 # Mc/sec: 7152.07 // Query: T183189_1 [L=4400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 965 (0.0591807); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.46s 00:00:02.50 Elapsed: 00:00:00.81 # Mc/sec: 15540.31 // Query: T183189_2 [L=4399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1038 (0.0636575); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.57u 0.46s 00:00:03.03 Elapsed: 00:00:00.88 # Mc/sec: 14300.90 // Query: T183189_3 [L=4399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1163 (0.0713234); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.46s 00:00:02.75 Elapsed: 00:00:00.84 # Mc/sec: 14981.89 // Query: T069166_1 [L=2110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-21 75.8 0.0 5.4e-21 74.9 0.0 1.4 1 rve Integrase core domain 9.9e-21 74.3 0.0 1.4e-20 73.8 0.0 1.2 1 RNase_H RNase H 3.7e-16 58.8 3.4 5.6e-16 58.2 3.4 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 0.00047 20.3 0.0 0.00096 19.3 0.0 1.5 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 RVT_3 Reverse transcriptase-like Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.9 0.0 1.7e-24 5.4e-21 6 118 .. 937 1045 .. 935 1046 .. 0.89 Alignments for each domain: == domain 1 score: 74.9 bits; conditional E-value: 1.7e-24 rve 6 elwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 + wq+D+t+++ + ++ +yllv++d+f++++ a+++ +e +a +vi l + ++g p + sDn +++ts+ ++++ + lgi++ ++ ++pq T069166_1 937 QDWQIDFTHMP--RVRKLKYLLVWVDTFTGWVEAFPTGSE-KATAVISSLLSDIILQFGL-PTSIQSDNRPAFTSQITQAVSQALGIQWNLHISYHPQ 1030 56*********..55556**********************.6666666666666666666.************************************* PP rve 104 dnGkvErfnrtlkde 118 + GkvE++n++lk++ T069166_1 1031 SSGKVEQTNGLLKTH 1045 ************986 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.8 0.0 4.4e-24 1.4e-20 3 142 .. 670 814 .. 668 815 .. 0.85 Alignments for each domain: == domain 1 score: 73.8 bits; conditional E-value: 4.4e-24 SEEEEEEEEEECT..TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 3 avvvYtDGsclgn..sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 +++++ DGs+ + +++++ag+ ++++ + +++l++ +t +aEL A+++aL a ++ ++niytDSkY+++ +++ v +w ++++ tt+ + + T069166_1 670 DHTWFIDGSSTRPncHSPAKAGYaIVSST-SVIDATALPPSTTSEQAELVALTQALTlA--KGLCINIYTDSKYAFHILHHRVVTWAERGYLTTQGS-SI 765 579******9876688888****555544.5567788999****************977..99**************9999**********777666.6* PP TTHHHHHHHHHCHC.SSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 99 knkelaellkelak.kkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +n++l+++l ++a +k+ + +kgH+ + gN aD++A++aa T069166_1 766 INASLIKTLLKAALlPKEAGVIDCKGHQKAsepiALGNAYADKVARQAA 814 **8888877666655************665578877***********98 PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.2 3.4 1.7e-19 5.6e-16 468 560 .. 1779 1867 .. 1779 1868 .. 0.76 Alignments for each domain: == domain 1 score: 58.2 bits; conditional E-value: 1.7e-19 HTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHH..HHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXX CS TLV_coat 468 LfleeGGlCaALkEeCCFyadksgivrdsiakLqerleq..rqrllednqlwfegllglspwlttllstilgpLlllLLiLllG.PcilnrLvqli 560 L++e+GGlC L+EeCCFy + sg+v d+i+kL++r ++ q + ++ w l + w++++l +pL+l+ L Lll Pci+ + q+i T069166_1 1779 LTAEKGGLCIFLNEECCFYLNLSGLVYDNIKKLKDRAQKlaNQASNYAEPPW--ALSNWMSWVLPIL----SPLILIFL-LLLF*PCIFCLVSQFI 1867 89*********************************98762233334445555..7888888888888....99976555.5556666666666665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.0 2.9e-07 0.00096 66 100 .. 119 153 .. 104 154 .. 0.82 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 2.9e-07 ETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 66 lieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +++ +++ s+l++p++p++llGrd+L+kl + L T069166_1 119 CQFGQHSFMHSFLVIPTCPLPLLGRDILTKLPASL 153 4555555556********************98887 PP >> RVT_3 Reverse transcriptase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 7.5e-05 0.24 14 70 .. 689 739 .. 678 766 .. 0.78 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 7.5e-05 RVT_3 14 gagvvirdpngevllagaeklenlataeeaEalAlleGLqlAlklgirrlivegDsq 70 +ag++i + + v+ a a l + +t+e+aE+ Al ++L+lA+ l i + +Ds+ T069166_1 689 KAGYAIVS-STSVIDATA--LPPSTTSEQAELVALTQALTLAKGLCI---NIYTDSK 739 56666664.555777777..6699******************99854...4555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.62 # Mc/sec: 9736.05 // Query: T069166_2 [L=2109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-21 75.6 9.0 3.9e-16 58.7 3.0 2.1 2 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.2 0.4 1.1e-08 0.00018 243 278 .. 1363 1398 .. 1353 1401 .. 0.90 2 ! 58.7 3.0 2.4e-20 3.9e-16 260 462 .. 1573 1774 .. 1554 1784 .. 0.74 Alignments for each domain: == domain 1 score: 20.2 bits; conditional E-value: 1.1e-08 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 243 lqgayltLnatnpsltedCwlClesgppyyeaiavn 278 +++++++L a+npsl+ +CwlC+ +++ y a++ + T069166_2 1363 INLTHSLLAASNPSLVSNCWLCISLSSSAYTAVPAL 1398 6889*****************************976 PP == domain 2 score: 58.7 bits; conditional E-value: 2.4e-20 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX...XX CS TLV_coat 260 dCwlClesgppyyeaiavngsv.snktsapacslspqlkltlsevtgqgllig.kvPkthqalcnktektskgse.ylvapngtvfacntgltpclst 354 +C+l s+ ++ v + + +++++++++s++++++ l t l + + + q +++t ++ + + + ++g +f+c+ ++ T069166_2 1573 SCLLIPSSENNNERLLVVTQRFlIHHENQTSPSVQLPHQSPLQPLTAAALAATpG--VWVQDTPFSTPSHLFTLHlQFCLTQGLFFLCGSST----YM 1664 5555555554444444444333033444333666666666555555555533332..22333333334333333338899********9865....69 PP XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXX...XXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHHHHHHHHHHH CS TLV_coat 355 allnlttdlCvlaellPdislisge.yiyaidepatRvkRepvaltlallLgGL...giaagvgtGttgl.vstqqfkkLqaalekDvqaleesIskl 447 l+++ t+ C l+ l P+i++++ ++ + t++kR + l++lL+ L + ++++gtG++g+ s+++f +L++ + ++++ s l T069166_2 1665 CLPANQTGTCTLVFLTPKIQFANRTkELPVPLMTLTQQKR---VIPLVPLLVSLglsASTTALGTGIAGIsTSVTTFCSLSNDFSPSITDISQTSSVL 1759 9*********************9988888889999*****...89999999988446667899*********************************** PP HHHHHHHHHHHHHHH CS TLV_coat 448 eksltslaevvlQNR 462 + +++sl vvlQNR T069166_2 1760 QAQVDSLTAVVLQNR 1774 **************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.53 # Mc/sec: 11383.94 // Query: T069166_3 [L=2109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-11 43.7 0.1 3.3e-11 43.0 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 0.1 2e-15 3.3e-11 65 188 .. 292 395 .. 244 408 .. 0.78 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 2e-15 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + ++++ lDlk+aF ++pl+ +++l+af+ ++ + +++ ++++lpqG+ SP f+ ++++ l +++ +l+ T069166_3 292 PSSTTHYSVLDLKDAFLTIPLHPPSQPLFAFTWTDP-------------------DTHQSQQLTWTVLPQGFRDSPHYFSQALSHDLLSFHPS--TSHLI 370 34559****************************988...................334599********************999888888875..79*** PP ECTTEEEEEESS.HHHHHHHHHHHH CS RVT_1 165 rYaDDililsks.keelqelleave 188 +Y+DD+l+ s s +++ q l ++ T069166_3 371 QYIDDLLFCSPSfESSQQDTLLLLQ 395 ***********95555433333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:00.73 # Mc/sec: 8265.06 // Query: T062885_1 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1718 (0.10536); expected 326.1 (0.02) Passed bias filter: 464 (0.0284558); expected 326.1 (0.02) Passed Vit filter: 233 (0.0142892); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.79u 0.58s 00:00:05.37 Elapsed: 00:00:01.19 # Mc/sec: 12455.43 // Query: T062885_2 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1084 (0.0664786); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.34u 0.45s 00:00:03.79 Elapsed: 00:00:00.87 # Mc/sec: 17036.74 // Query: T062885_3 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1848 (0.113333); expected 326.1 (0.02) Passed bias filter: 355 (0.0217711); expected 326.1 (0.02) Passed Vit filter: 254 (0.0155771); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.44u 0.50s 00:00:04.94 Elapsed: 00:00:01.06 # Mc/sec: 13982.98 // Query: T245123_1 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.70 # Mc/sec: 9134.22 // Query: T245123_2 [L=2235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 11024.06 // Query: T245123_3 [L=2234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 9538.95 // Query: T369376_1 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.69 # Mc/sec: 8918.33 // Query: T369376_2 [L=2151] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2151 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.57 # Mc/sec: 10609.73 // Query: T369376_3 [L=2150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2150 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.55 # Mc/sec: 11183.24 // Query: T153290_1 [L=2749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.076 11.6 2.7 0.19 10.3 2.7 1.6 1 DUF2207 Predicted membrane protein (DUF2207) 2.4 8.2 16.7 4.1 7.4 16.7 1.3 1 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc3 Domain annotation for each model (and alignments): >> DUF2207 Predicted membrane protein (DUF2207) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 2.7 2.4e-05 0.19 383 438 .. 1073 1154 .. 1054 1163 .. 0.68 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 2.4e-05 DUF2207 383 rlsalglilillglilillallllvll............................lvfllilllillliaiivlllfsrllgrr 438 al+l+++++++++++++l l l ++f+++lll+lll+++++lll+++ l + T153290_1 1073 GAAALLLLFFFFFFFFFFFLLPLP--LplpspppspplllllilpspplplpllfFFFFFLLLLLLLLLLFLLLLLPRIELNKK 1154 334444444444444444444444..356*********************9998766666666666666666777766655554 PP >> RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 16.7 0.00051 4.1 180 214 .. 1516 1550 .. 1470 1554 .. 0.66 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00051 RNA_pol_3_Rpc31 180 aeeeddeeekkekedeeeeeeeeeeeddefdddde 214 +eee++e+e++e+e eeeeeeeeeee++e ++++e T153290_1 1516 EEEEEEEQEEEEGEGEEEEEEEEEEEEEEKEEEEE 1550 22333322333333343333334444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1058 (0.0648841); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 153 (0.00938305); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.94u 0.43s 00:00:02.37 Elapsed: 00:00:00.76 # Mc/sec: 10347.92 // Query: T153290_2 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 918 (0.0562983); expected 326.1 (0.02) Passed bias filter: 240 (0.0147185); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.37s 00:00:01.92 Elapsed: 00:00:00.72 # Mc/sec: 10918.83 // Query: T153290_3 [L=2748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.62 # Mc/sec: 12679.94 // Query: T357977_1 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 911 (0.055869); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.61 # Mc/sec: 4366.28 // Query: T357977_2 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1322 (0.0810745); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.80 # Mc/sec: 3325.71 // Query: T357977_3 [L=930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1025 (0.0628603); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.56 # Mc/sec: 4667.67 // Query: T376347_1 [L=6005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.34s 00:00:02.19 Elapsed: 00:00:00.82 # Mc/sec: 20950.35 // Query: T376347_2 [L=6005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.85u 0.36s 00:00:02.21 Elapsed: 00:00:00.88 # Mc/sec: 19521.91 // Query: T376347_3 [L=6004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.86u 0.39s 00:00:02.25 Elapsed: 00:00:00.93 # Mc/sec: 18469.27 // Query: T372913_1 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 7810.93 // Query: T372913_2 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 94 (0.00576475); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.59 # Mc/sec: 8737.65 // Query: T372913_3 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9726.82 // Query: T337039_1 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 1743.49 // Query: T337039_2 [L=322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 1588.25 // Query: T337039_3 [L=322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 381 (0.0233656); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.62 # Mc/sec: 1485.79 // Query: T257541_1 [L=711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.8 6.9 21.2 9.3 5.9 0.8 4.5 5 CYLD_phos_site Phosphorylation region of CYLD, unstructured Domain annotation for each model (and alignments): >> CYLD_phos_site Phosphorylation region of CYLD, unstructured # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.2 0.0036 58 81 100 .. 200 219 .. 183 227 .. 0.75 2 ? 5.0 0.2 0.0011 19 81 100 .. 241 260 .. 233 268 .. 0.83 3 ? 3.3 3.0 0.0037 60 81 103 .. 282 304 .. 274 310 .. 0.83 4 ? 0.4 0.2 0.029 4.8e+02 87 99 .. 300 312 .. 298 316 .. 0.84 5 ? 5.9 0.8 0.00057 9.3 81 105 .. 347 371 .. 338 382 .. 0.81 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.0036 CYLD_phos_site 81 sLtdsspdfghssPPlqppa 100 s+ + p+ +h+sPP q+p T257541_1 200 SVPSTDPGSTHCSPPAQTPG 219 4555668999*******996 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0011 CYLD_phos_site 81 sLtdsspdfghssPPlqppa 100 s td p+ +h+sPP q+p T257541_1 241 SSTDPGPGSTHCSPPAQTPG 260 679999***********996 PP == domain 3 score: 3.3 bits; conditional E-value: 0.0037 CYLD_phos_site 81 sLtdsspdfghssPPlqppatns 103 s td p+ +h+sPP q+p ++ T257541_1 282 SSTDPGPGSTHCSPPAQTPGSTH 304 679999************98765 PP == domain 4 score: 0.4 bits; conditional E-value: 0.029 CYLD_phos_site 87 pdfghssPPlqpp 99 p+ +h+sPP q+p T257541_1 300 PGSTHCSPPAQTP 312 7889*******98 PP == domain 5 score: 5.9 bits; conditional E-value: 0.00057 CYLD_phos_site 81 sLtdsspdfghssPPlqppatnsls 105 s td p+ +h+sPP q+p ++ s T257541_1 347 SSTDPGPGSTHCSPPAQTPGSTHCS 371 679999************9876554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 3280.73 // Query: T257541_2 [L=711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.7 6.9 8.2 14 5.3 0.3 3.1 3 CYLD_phos_site Phosphorylation region of CYLD, unstructured Domain annotation for each model (and alignments): >> CYLD_phos_site Phosphorylation region of CYLD, unstructured # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.1 0.0065 1.1e+02 81 100 .. 227 246 .. 218 254 .. 0.79 2 ? 5.3 0.3 0.00088 14 81 102 .. 268 289 .. 260 296 .. 0.83 3 ? 2.2 0.4 0.0079 1.3e+02 85 101 .. 337 353 .. 321 359 .. 0.83 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.0065 CYLD_phos_site 81 sLtdsspdfghssPPlqppa 100 s td + +h+sPP q+p T257541_2 227 SSTDPGLGSTHCSPPAQTPG 246 5577778889*******996 PP == domain 2 score: 5.3 bits; conditional E-value: 0.00088 CYLD_phos_site 81 sLtdsspdfghssPPlqppatn 102 s td p+ +h+sPP q+p + T257541_2 268 SSTDPGPGSTHCSPPAQTPGQG 289 679999************9765 PP == domain 3 score: 2.2 bits; conditional E-value: 0.0079 CYLD_phos_site 85 sspdfghssPPlqppat 101 ++p+ +h+sPP q+p T257541_2 337 QTPGTTHCSPPAQTPGR 353 568899*******9965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 3447.54 // Query: T257541_3 [L=711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 3280.73 // Query: T051532_1 [L=4599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.34s 00:00:01.89 Elapsed: 00:00:00.83 # Mc/sec: 15851.76 // Query: T051532_2 [L=4599] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4599 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.33s 00:00:01.84 Elapsed: 00:00:00.67 # Mc/sec: 19637.25 // Query: T051532_3 [L=4598] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0055 16.4 6.3 0.51 10.1 1.1 2.3 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 1.1 3.1e-05 0.51 9 39 .. 107 137 .. 106 138 .. 0.70 2 ! 9.8 0.7 3.9e-05 0.63 3 40 .] 136 173 .. 135 176 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 3.1e-05 Pentapeptide_2 9 GsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 Gs+ tG++ +Gs+ tGs +Gs+ tG + tG T051532_3 107 GSVATGTVAMGSVATGSVATGSVATGTVATG 137 7777777777777777777777777777776 PP == domain 2 score: 9.8 bits; conditional E-value: 3.9e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntGs 40 tGs+ +G++ tG++ +G++ tGs Gs+ Gs tGs T051532_3 136 TGSVATGTVATGSVATGTVATGSVARGSVARGSMATGS 173 78888888888888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4598 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.60 # Mc/sec: 21923.49 // Query: T276726_1 [L=1662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 8971.13 // Query: T276726_2 [L=1661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 8965.73 // Query: T276726_3 [L=1661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.01 14.6 0.0 0.016 14.0 0.0 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 9.6e-07 0.016 282 317 .. 152 187 .. 144 191 .. 0.87 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9.6e-07 EEEE---HHHHHHHHHHHHHHHHHHHTT---EEETT CS Transposase_22 282 rltadlsaetlkarrewtdviqilkekkfqPrllyP 317 ++t dl++e + r +w+d+++ lkekk+ + P T276726_3 152 KITVDLTSEITQYRMQWGDILKALKEKKISTQCFIP 187 79**************************98766555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1661 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 8965.73 // Query: T111711_1 [L=5731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.57 # Mc/sec: 28267.96 // Query: T111711_2 [L=5731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.30s 00:00:01.55 Elapsed: 00:00:00.53 # Mc/sec: 30934.75 // Query: T111711_3 [L=5731] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5731 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.29s 00:00:01.66 Elapsed: 00:00:00.57 # Mc/sec: 28267.96 // Query: T222338_1 [L=1557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1557 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 8908.62 // Query: T222338_2 [L=1556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 9084.59 // Query: T222338_3 [L=1556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.49 # Mc/sec: 9084.59 // Query: T188380_1 [L=4949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.29s 00:00:01.47 Elapsed: 00:00:00.54 # Mc/sec: 26218.98 // Query: T188380_2 [L=4948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.56 # Mc/sec: 25277.48 // Query: T188380_3 [L=4948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4948 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.29s 00:00:01.49 Elapsed: 00:00:00.54 # Mc/sec: 26213.68 // Query: T176633_1 [L=685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 4082.64 // Query: T176633_2 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-05 24.4 34.1 0.00088 19.8 5.5 4.5 4 UPAR_LY6 u-PAR/Ly-6 domain ------ inclusion threshold ------ 3.3 7.9 6.5 11 6.2 0.3 3.1 3 DUF1480 Protein of unknown function (DUF1480) Domain annotation for each model (and alignments): >> UPAR_LY6 u-PAR/Ly-6 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 1.6 0.06 4.9e+02 12 31 .. 73 91 .. 59 96 .. 0.76 2 ! 12.4 0.6 2.2e-05 0.18 16 58 .. 146 185 .. 136 207 .. 0.77 3 ! 6.6 4.8 0.0014 12 4 74 .. 226 302 .. 224 304 .. 0.73 4 ! 19.8 5.5 1.1e-07 0.00088 1 55 [. 323 377 .. 323 408 .. 0.90 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.06 CCCCEEEETTB-EEEEEEEE CS UPAR_LY6 12 ClpeveCpeadsvCvsatlk 31 C + ++Cp a+++C+ ++++ T176633_2 73 CIE-ITCPSAQDFCLFSQMQ 91 444.59********987766 PP == domain 2 score: 12.4 bits; conditional E-value: 2.2e-05 EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCCCCC CS UPAR_LY6 16 veCpeadsvCvsatlklqagnlettlvvkgCaresscrlladf 58 ++C+ +++ Cv+ + g+ + kgCa+ + c+l ++ T176633_2 146 MNCTGKQTACVTLHGTWSRGG---PQILKGCATPEVCNLHENA 185 79*************999665...99***********544433 PP == domain 3 score: 6.6 bits; conditional E-value: 0.0014 EEEB.TTTBCCCCEEEETTB-EEEEEEEEECCTTEEE.EEEEEEEESCCGG......CCCCCCSTSECEEEEEEEESST CS UPAR_LY6 4 Clge.ssesClpeveCpeadsvCvsatlklqagnlet.tlvvkgCaressc......rlladfinigsikvsesccqsd 74 C +sC p Cpe++++C++ + g+ + + + C++++ c + l +++ + v+++ccq++ T176633_2 226 CFTC*DLHSCGPL-PCPEDNHYCLQMAGITGFGEGNPvSWRNGFCVTSKDCkfgnsiYALTYGVGF-GFCVNTTCCQGN 302 5555567899999.***********9998888885550555556*******998844334444433.467899***975 PP == domain 4 score: 19.8 bits; conditional E-value: 1.1e-07 EEEEEEBTTTBCCCC..EEEETTB-EEEEEEEEECCTTEEEEEEEEEEESCCGGCCC CS UPAR_LY6 1 CysClgessesClpe..veCpeadsvCvsatlklqagnlettlvvkgCaresscrll 55 C++C g e C+++ ++Cp ++s Cv+ l+ ++g+ +++ v+gC c+ l T176633_2 323 CPTCPGSYLEPCNSSfyMQCPSGESECVQLDLTSEEGG--RNVNVRGCGSRDLCSAL 377 *************************************9..88999***999999544 PP >> DUF1480 Protein of unknown function (DUF1480) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.3 0.0013 11 28 49 .. 73 98 .. 72 98 .. 0.88 2 ? 3.3 0.1 0.011 90 31 45 .. 238 252 .. 234 255 .. 0.90 3 ? -0.4 0.1 0.16 1.3e+03 33 48 .. 342 357 .. 334 385 .. 0.66 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0013 DUF1480 28 tlsiPCksdpdlC....mqldgWden 49 ++i C s +d+C mql Wd + T176633_2 73 CIEITCPSAQDFClfsqMQLGKWDSH 98 589**********88888******76 PP == domain 2 score: 3.3 bits; conditional E-value: 0.011 DUF1480 31 iPCksdpdlCmqldg 45 +PC d+ +C+q+ g T176633_2 238 LPCPEDNHYCLQMAG 252 7***********976 PP == domain 3 score: -0.4 bits; conditional E-value: 0.16 DUF1480 33 CksdpdlCmqldgWde 48 C s + C+qld e T176633_2 342 CPSGESECVQLDLTSE 357 6666666777764443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.46 # Mc/sec: 4253.93 // Query: T176633_3 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.45 # Mc/sec: 4348.46 // Query: T132716_1 [L=2587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 13964.09 // Query: T132716_2 [L=2587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.52 # Mc/sec: 14232.63 // Query: T132716_3 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 13700.20 // Query: T042605_1 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 4168.64 // Query: T042605_2 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.45 # Mc/sec: 4539.18 // Query: T042605_3 [L=713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.47 # Mc/sec: 4339.94 // Query: T100219_1 [L=3061] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3061 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.52 # Mc/sec: 16840.39 // Query: T100219_2 [L=3060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-06 28.6 0.6 1.8 8.8 0.0 4.4 4 Gallidermin Gallidermin Domain annotation for each model (and alignments): >> Gallidermin Gallidermin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.8 0.0 0.00011 1.8 22 43 .. 103 124 .. 97 127 .. 0.85 2 ! 2.9 0.0 0.0079 1.3e+02 23 42 .. 485 504 .. 479 507 .. 0.84 3 ! 8.8 0.0 0.00011 1.8 22 43 .. 1143 1164 .. 1137 1167 .. 0.85 4 ? 2.2 0.0 0.013 2.1e+02 21 43 .. 1954 1976 .. 1951 1978 .. 0.87 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00011 XXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 22 sndsgaepRiaSkflCtPGCAk 43 + + +e R+ S+ lC PG Ak T100219_2 103 AGQAHSEQRVSSWGLCMPGKAK 124 5566789************998 PP == domain 2 score: 2.9 bits; conditional E-value: 0.0079 XXXXXXXXXXXXXXXXXXXX CS Gallidermin 23 ndsgaepRiaSkflCtPGCA 42 + +e R+ + lC PG A T100219_2 485 GQAHSEQRVSRWGLCMPGKA 504 566789************87 PP == domain 3 score: 8.8 bits; conditional E-value: 0.00011 XXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 22 sndsgaepRiaSkflCtPGCAk 43 + + +e R+ S+ lC PG Ak T100219_2 1143 AGQAHSEQRVSSWGLCMPGKAK 1164 5566789************998 PP == domain 4 score: 2.2 bits; conditional E-value: 0.013 XXXXXXXXXXXXXXXXXXXXXXX CS Gallidermin 21 esndsgaepRiaSkflCtPGCAk 43 +s +s++e + + lC PG Ak T100219_2 1954 KSGQSQSEQHVGPWGLCMPGKAK 1976 5778999999**********998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.49 # Mc/sec: 17865.59 // Query: T100219_3 [L=3060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.51 # Mc/sec: 17164.98 // Query: T156678_1 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.48 # Mc/sec: 11294.32 // Query: T156678_2 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.48 # Mc/sec: 11294.32 // Query: T156678_3 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10228.82 // Query: T226880_1 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 3610.37 // Query: T226880_2 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 3539.58 // Query: T226880_3 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3610.37 // Query: T256179_1 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4913.90 // Query: T256179_2 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 5114.46 // Query: T256179_3 [L=875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.49 # Mc/sec: 5108.62 // Query: T021938_1 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 3222.81 // Query: T021938_2 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3036.88 // Query: T021938_3 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.48 # Mc/sec: 3289.95 // Query: T353757_1 [L=1439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-06 25.7 0.0 8.6e-06 24.9 0.0 1.3 1 AAA_9 ATP-binding dynein motor region D5 Domain annotation for each model (and alignments): >> AAA_9 ATP-binding dynein motor region D5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 5.3e-10 8.6e-06 24 127 .. 1193 1306 .. 1144 1313 .. 0.78 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 5.3e-10 ..S-EEEESSSCCHHHHHHH......HEE-TT...STTHHHHHHHHHHCT-EEEES--.SSHHCCCHHHHTTT-EE.......S.....EEEESSCE. CS AAA_9 24 skrwPlliDPqgqaikwiknkekeklkvikls...dkkflktLenairfGkpllienvgeeldpiLepvLekeiikk.....gk.....kliklgdke 108 rwPl+iDP gqa ++++ + ++ +++++ + +++ L a+r+Gkpl+++ +e+l p+++ Le + + + +++++ T353757_1 1193 DGRWPLVIDPLGQAATFLRYQDTNYVDTVNPEplrPETMWLALLGALRYGKPLVFDLREEDLFPVVQRQLEAVQERYlsllrPTdgpeySPTQFQEQ- 1289 35******************8888888998887765667778999*************999999999999843333222332013332233333333. PP EE--SS-EEEEEESSTTTH CS AAA_9 109 ieynenFrLylttklsnph 127 e+FrL+++tk + p T353757_1 1290 --RLEHFRLFFVTKVQWPP 1306 ..44679999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 783 (0.0480191); expected 326.1 (0.02) Passed bias filter: 406 (0.0248988); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 7767.42 // Query: T353757_2 [L=1439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1439 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 8576.53 // Query: T353757_3 [L=1438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1438 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 7762.03 // Query: T156184_1 [L=1346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 7550.35 // Query: T156184_2 [L=1346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 5924.12 // Query: T156184_3 [L=1346] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1346 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 548 (0.0336073); expected 326.1 (0.02) Passed bias filter: 341 (0.0209125); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.61 # Mc/sec: 6312.59 // Query: T337277_1 [L=2263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.66 # Mc/sec: 9809.18 // Query: T337277_2 [L=2263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 9520.67 // Query: T337277_3 [L=2262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.74 # Mc/sec: 8744.86 // Query: T028638_1 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.78 # Mc/sec: 10519.05 // Query: T028638_2 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 12065.97 // Query: T028638_3 [L=2868] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2868 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.70 # Mc/sec: 11721.23 // Query: T300727_1 [L=584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 2784.54 // Query: T300727_2 [L=584] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-05 22.3 0.3 0.0014 18.5 0.1 2.4 2 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.1 8.7e-08 0.0014 3 39 .. 289 325 .. 287 337 .. 0.87 2 ? 1.0 0.0 0.025 4.1e+02 41 99 .. 436 488 .. 436 491 .. 0.69 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 8.7e-08 Epiglycanin_C 3 pvsevkPsGslkPWeiiLitLvavvvavGllvgLsfC 39 p +e + G l+ We+iL+tL+ v +av l+ gL++ T300727_2 289 PGNEGRSNGCLRLWEVILVTLALVAMAVILFTGLFYF 325 56777889**************************984 PP == domain 2 score: 1.0 bits; conditional E-value: 0.025 Epiglycanin_C 41 rnllslrnladtavyrPhghnlslGlgyGvghglshrprwspdsvwrrpgssvalemgg 99 rn+l lrnl+ + h +n lG + + hg++ + +++ +r + s +++e + T300727_2 436 RNSLCLRNLFTKDL---HIPN--LGPCPQGYHGVQD-GSSETETDFRDQCSPTGMELMR 488 66777777766665...5557..8888888999988.4455667778888888888665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (584 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 341 (0.0209125); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.64 # Mc/sec: 2610.51 // Query: T300727_3 [L=583] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (583 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3270.32 // Query: T212573_1 [L=2804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.72 # Mc/sec: 11141.34 // Query: T212573_2 [L=2804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.043 13.4 0.1 0.099 12.2 0.1 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.1 6e-06 0.099 4 19 .] 2503 2518 .. 2503 2518 .. 0.94 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 6e-06 DUF1725 4 gKWMELEnIILSEisQ 19 + WM+L +I+L+EisQ T212573_2 2503 TAWMKLKDIMLREISQ 2518 57*************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 810 (0.049675); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.94u 0.38s 00:00:02.31 Elapsed: 00:00:00.80 # Mc/sec: 10027.21 // Query: T212573_3 [L=2804] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.5 6.6 10.3 3.4 7.3 0.2 3.2 3 DUF1678 Protein of unknown function (DUF1678) Domain annotation for each model (and alignments): >> DUF1678 Protein of unknown function (DUF1678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 1.2 0.0039 64 14 57 .. 1608 1651 .. 1603 1671 .. 0.78 2 ? 0.4 0.1 0.026 4.3e+02 14 38 .. 1698 1722 .. 1681 1728 .. 0.76 3 ? 7.3 0.2 0.00021 3.4 14 51 .. 1728 1765 .. 1723 1769 .. 0.93 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.0039 DUF1678 14 vlrvlrevlrrGkkpslevtyrtvnGkvyGpyyvarwkrdskfk 57 lrv r++++ G+k l vt +tvn + v+r +++ k T212573_3 1608 QLRVTRKTINIGTKQQLRVTRKTVNTGTKQQRRVTRKTVNTGTK 1651 68999999999999999999999999887777777766554444 PP == domain 2 score: 0.4 bits; conditional E-value: 0.026 DUF1678 14 vlrvlrevlrrGkkpslevtyrtvn 38 lrv r++++ G+k l vt +t+n T212573_3 1698 QLRVTRKTINIGTKQQLRVTRKTIN 1722 5788888888888888888888887 PP == domain 3 score: 7.3 bits; conditional E-value: 0.00021 DUF1678 14 vlrvlrevlrrGkkpslevtyrtvnGkvyGpyyvarwk 51 lrv r++++ G+k l vt +t+n + v+rw+ T212573_3 1728 QLRVTRKTINTGTKQQLRVTRKTINIGTKQQLRVTRWR 1765 69***********************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2804 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.63 # Mc/sec: 12732.96 // Query: T257913_1 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.59 # Mc/sec: 1386.78 // Query: T257913_2 [L=286] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 83 (0.00509015); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1604.31 // Query: T257913_3 [L=285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 276 (0.0169263); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.53 # Mc/sec: 1538.37 // Query: T195968_1 [L=2767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2767 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.76 # Mc/sec: 10415.68 // Query: T195968_2 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.35s 00:00:01.73 Elapsed: 00:00:00.67 # Mc/sec: 11810.53 // Query: T195968_3 [L=2766] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2766 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.27s 00:00:01.42 Elapsed: 00:00:00.73 # Mc/sec: 10839.80 // Query: T352808_1 [L=1541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 7872.39 // Query: T352808_2 [L=1541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.49 # Mc/sec: 8997.02 // Query: T352808_3 [L=1541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.66 # Mc/sec: 6679.60 // Query: T106771_1 [L=1160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 5721.66 // Query: T106771_2 [L=1160] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 8.5 4.0 1.2 9.7 0.2 2.1 2 LEA_1 Late embryogenesis abundant (LEA) group 1 Domain annotation for each model (and alignments): >> LEA_1 Late embryogenesis abundant (LEA) group 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.2 7.4e-05 1.2 5 44 .. 25 63 .. 22 67 .. 0.81 2 ? -1.1 0.6 0.17 2.8e+03 45 67 .. 94 116 .. 80 119 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 7.4e-05 LEA_1 5 KekakdvaasakakmektkAkvqEKaekatArdpaekelA 44 +e ++ v+ s+ a+ +A +EKa ka Ar+pa+++ A T106771_2 25 QEPTERVGGSRMAGCR-SRALPHEKAAKAPARNPAQRRWA 63 5556666777777777.89999***************998 PP == domain 2 score: -1.1 bits; conditional E-value: 0.17 LEA_1 45 eerkkareaeAemelhqakaeha 67 ++ar+a+A el+ a++++a T106771_2 94 APSARARQADAHPELQLARKRRA 116 55678999999999999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1160 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 6381.85 // Query: T106771_3 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.61 # Mc/sec: 5435.58 // Query: T273196_1 [L=1707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1707 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.71 # Mc/sec: 6878.08 // Query: T273196_2 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.55 # Mc/sec: 8873.77 // Query: T273196_3 [L=1706] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1706 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 7625.90 // Query: T357976_1 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1004 (0.0615724); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4712.84 // Query: T357976_2 [L=938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1374 (0.0842635); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.65 # Mc/sec: 4128.40 // Query: T357976_3 [L=938] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (938 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1095 (0.0671532); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 3946.26 // Query: T106774_1 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 6618.92 // Query: T106774_2 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 6152.80 // Query: T106774_3 [L=1527] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1527 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.68 # Mc/sec: 6424.25 // Query: T259275_1 [L=4102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.74 # Mc/sec: 15858.28 // Query: T259275_2 [L=4102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.76 # Mc/sec: 15440.95 // Query: T259275_3 [L=4101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.77 # Mc/sec: 15236.71 // Query: T173076_1 [L=219] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.7 0.1 0.069 13.2 0.1 1.3 1 SoxG Sarcosine oxidase, gamma subunit family Domain annotation for each model (and alignments): >> SoxG Sarcosine oxidase, gamma subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.1 4.2e-06 0.069 26 88 .. 98 157 .. 63 163 .. 0.82 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.2e-06 SoxG 26 kgvaskesvlwlaPdeflvidqegkaalaalaealaelasvvdlShgrvlisisGakaeavla 88 ++a + v++laP lv++ + l la+a a + v++ ++rv++++ G++ ++ l T173076_1 98 AALAHRD-VVALAPHPVLVAV--LVHRLLGLARAAAATRAEVGVRGRRVRVRVRGRRRRRRLV 157 4455555.9*******99999..7788889999999999*****************9998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 400 (0.0245308); expected 326.1 (0.02) Passed bias filter: 187 (0.0114682); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 1099.16 // Query: T173076_2 [L=218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.62 # Mc/sec: 1005.90 // Query: T173076_3 [L=218] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (218 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.56 # Mc/sec: 1113.68 // Query: T166068_1 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.48 # Mc/sec: 6842.15 // Query: T166068_2 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 392 (0.0240402); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 4976.11 // Query: T166068_3 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.11 12.6 0.1 0.11 12.6 0.1 2.6 2 DUF4519 Domain of unknown function (DUF4519) Domain annotation for each model (and alignments): >> DUF4519 Domain of unknown function (DUF4519) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 6.5e-06 0.11 12 38 .. 682 708 .. 679 711 .. 0.95 2 ? 0.4 4.1 0.043 7e+02 10 26 .. 786 802 .. 780 804 .. 0.73 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.5e-06 DUF4519 12 trkdKkeRrkenkeaqekvttvVlPvl 38 ++k+KkeR++++k + + +t V+P+l T166068_3 682 SKKKKKERKEKIKCGRAQWLTPVIPAL 708 79***********************98 PP == domain 2 score: 0.4 bits; conditional E-value: 0.043 DUF4519 10 KEtrkdKkeRrkenkea 26 K +++KkeR+k+ ke+ T166068_3 786 KTPSQKKKERKKKKKEN 802 55567888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 5131.61 // Query: T111297_1 [L=5283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.38s 00:00:02.06 Elapsed: 00:00:00.76 # Mc/sec: 19886.53 // Query: T111297_2 [L=5283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.85 # Mc/sec: 17780.90 // Query: T111297_3 [L=5283] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5283 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.87u 0.35s 00:00:02.22 Elapsed: 00:00:00.71 # Mc/sec: 21286.99 // Query: T337195_1 [L=6118] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6118 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.40s 00:00:02.27 Elapsed: 00:00:00.88 # Mc/sec: 19889.27 // Query: T337195_2 [L=6117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.41s 00:00:02.34 Elapsed: 00:00:00.90 # Mc/sec: 19444.11 // Query: T337195_3 [L=6117] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6117 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 549 (0.0336686); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.89u 0.39s 00:00:03.28 Elapsed: 00:00:00.78 # Mc/sec: 22435.51 // Query: T316884_1 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4257.59 // Query: T316884_2 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.49 # Mc/sec: 4431.37 // Query: T316884_3 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.4 0.5 47 3.4 0.1 3.5 4 PIRT Phosphoinositide-interacting protein family Domain annotation for each model (and alignments): >> PIRT Phosphoinositide-interacting protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.29 4.7e+03 42 56 .. 150 164 .. 149 166 .. 0.88 2 ? 3.2 0.0 0.0034 56 33 56 .. 178 201 .. 168 203 .. 0.84 3 ? 3.4 0.1 0.0029 47 33 56 .. 215 238 .. 205 242 .. 0.81 4 ? 3.4 0.0 0.0029 47 26 56 .. 247 275 .. 241 278 .. 0.76 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.29 PIRT 42 kwdvykkpiivlsvG 56 +w++ + p i + vG T316884_3 150 RWEICHHPHITVLVG 164 6*******9999888 PP == domain 2 score: 3.2 bits; conditional E-value: 0.0034 PIRT 33 svwtngprskwdvykkpiivlsvG 56 s t + s+w++ + p + +svG T316884_3 178 SAVTLPLLSQWEICHHPPVAVSVG 201 456777789**************9 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0029 PIRT 33 svwtngprskwdvykkpiivlsvG 56 s t + s w++ + p i +svG T316884_3 215 SAVTLTLLSWWEICHHPHIAVSVG 238 4556677899*************9 PP == domain 4 score: 3.4 bits; conditional E-value: 0.0029 PIRT 26 cissrsesvwtngprskwdvykkpiivlsvG 56 c rs + t s+w++ + p i +svG T316884_3 247 CLGGRSAVILT--LLSRWEICRHPHIAVSVG 275 55566655555..4678*************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.47 # Mc/sec: 4619.94 // Query: T271918_1 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-08 33.3 0.0 5.2e-08 32.5 0.0 1.3 1 dUTPase dUTPase ------ inclusion threshold ------ 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.0 6.3e-12 5.2e-08 7 81 .. 707 781 .. 702 783 .. 0.94 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 6.3e-12 BESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlf 81 + + +sAg+++ ++k t++pg+t+ +p+++++ l+ g+ +l+lp S ++kg++v+ gv d dy+ e+++ lf T271918_1 707 VPMTLRSAGLEVLVSKGGTLPPGDTTAIPLNRKLRLSPGHLGLLLPLSQQSKKGVTVLAGVTDPDYQDEISLLLF 781 5667789**************************************************************999886 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 2.3e-05 0.19 159 188 .. 9 38 .. 4 45 .. 0.82 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2.3e-05 ...TEEECTTEEEEEESSHHHHHHHHHHHH CS RVT_1 159 kgvtllrYaDDililskskeelqelleave 188 +g+tl++Y+DDi+++ +s++e+ + l+ ++ T271918_1 9 NGITLVHYIDDIMLIGSSEQEVANTLDLLV 38 599***************999888877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.45 # Mc/sec: 4996.92 // Query: T271918_2 [L=785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.49 # Mc/sec: 4583.17 // Query: T271918_3 [L=785] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-07 29.6 1.2 9.9e-07 28.9 1.2 1.2 1 RNase_H RNase H 0.00061 19.9 0.0 0.0012 18.9 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 1.2 1.2e-10 9.9e-07 6 125 .. 316 435 .. 311 451 .. 0.86 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 1.2e-10 EEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHH...HHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHH CS RNase_H 6 vYtDGsclgnsgeggagavlykegarnisapleeaqtnnraEL...sAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknke 102 +tD s++ + ++ av+ + +r+ + +e+++ + aEL + v++ + + +++++v +yt S v +g+ w +wkk++wk +++ + +++ T271918_3 316 RFTDDSARYVGTTQKWTAVALQPLSRTSLKDSSERKSSQWAEL*avHLVVHFVWK-EKWPDVRLYTYSWAVANGLAGWSGTWKKHNWKIGDKE--IWERD 412 599***999999999*999877778877777778********9987666666654.499****************************666555..999** PP HHHHHHHCHCSSEEEEEE-SCCS CS RNase_H 103 laellkelakkkkvqlkhvkgHa 125 ++ l+e k +k+ ++hv +H+ T271918_3 413 MWMYLSEWSKTVKIFVSHVSAHQ 435 **********************7 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 1.4e-07 0.0012 25 96 .. 549 618 .. 527 624 .. 0.70 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 1.4e-07 rve 25 yllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytsk...afreflaelgirvsf 96 ++l+ i+++sr+ +a++ + +++ t+++l+e + + +g p + sD+g+ + +k + ++ +gi++s+ T271918_3 549 FVLTGINTYSRYRFAYPACNASAKTTICGLTE-CLIHCHGI-PHSIASDQGTHFMAKev*Q---WAHAHGIHWSY 618 578899***************55555555555.55555555.************9773332...44455555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (785 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.46 # Mc/sec: 4882.07 // Query: T184481_1 [L=3591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.51 # Mc/sec: 20143.61 // Query: T184481_2 [L=3591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.52 # Mc/sec: 19756.23 // Query: T184481_3 [L=3591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.50 # Mc/sec: 20546.48 // Query: T229039_1 [L=2002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-10 39.9 0.0 3.8e-10 39.4 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain 5.2e-06 26.9 2.4 4.1e-05 24.0 1.4 2.8 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.0 4.6e-14 3.8e-10 112 210 .] 71 205 .. 58 205 .. 0.94 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 4.6e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke.......................................snseg.evvvvfvlYr 171 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ ++ +g + + +++Y T229039_1 71 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekegplvrpasrrttpqttrpgpgtegeapisr*krhPDDTG*FTFTLVIVYC 169 89********************.9***********************************************************75645************ PP GAIN 172 nLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229039_1 170 TPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 205 ****9998....8***********************9985 PP >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 1.4 5e-09 4.1e-05 1 42 [] 233 289 .. 233 289 .. 0.89 2 ? 0.0 0.0 0.16 1.3e+03 13 22 .. 386 395 .. 382 406 .. 0.80 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 5e-09 GPS 1 piCvfWd...............ednntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 p CvfW+ + ++tg+Ws +G l+ n t++v +C+H+ sF +L T229039_1 233 PVCVFWNhsla*m*crefcifiV-SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 289 79*******************63.479********8544.6***************766 PP == domain 2 score: 0.0 bits; conditional E-value: 0.16 GPS 13 gsWseeGClt 22 +Ws +GC++ T229039_1 386 QRWSVRGCRS 395 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.48 # Mc/sec: 11932.05 // Query: T229039_2 [L=2002] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2002 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.50 # Mc/sec: 11454.76 // Query: T229039_3 [L=2001] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2001 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.51 # Mc/sec: 11224.55 // Query: T089795_1 [L=1200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 365 (0.0223844); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 7152.07 // Query: T089795_2 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.45 # Mc/sec: 7622.52 // Query: T089795_3 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 7146.11 // Query: T302114_1 [L=1971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1304 (0.0799706); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.33s 00:00:01.98 Elapsed: 00:00:00.62 # Mc/sec: 9094.67 // Query: T302114_2 [L=1971] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1971 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 851 (0.0521894); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.26s 00:00:01.24 Elapsed: 00:00:00.49 # Mc/sec: 11507.54 // Query: T302114_3 [L=1970] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1970 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1257 (0.0770882); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.37s 00:00:02.04 Elapsed: 00:00:00.70 # Mc/sec: 8051.19 // Query: T001702_1 [L=2046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.52 # Mc/sec: 11256.27 // Query: T001702_2 [L=2046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.12 12.3 0.0 0.32 10.9 0.0 1.6 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 1.9e-05 0.32 37 82 .. 632 678 .. 616 688 .. 0.79 2 ? -3.5 0.0 0.57 9.4e+03 5 23 .. 1414 1432 .. 1413 1438 .. 0.84 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 1.9e-05 HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 37 kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 k+ gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001702_2 632 KRAGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 678 689********************853788888888877777777765 PP == domain 2 score: -3.5 bits; conditional E-value: 0.57 HTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 5 engklGevvsvdvwtldtr 23 + g++G++ +++ w+ + + T001702_2 1414 RRGSIGKPCMFHFWFNQAF 1432 6899********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.50 # Mc/sec: 11706.52 // Query: T001702_3 [L=2045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 11038.49 // Query: T182996_1 [L=6776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.39s 00:00:01.98 Elapsed: 00:00:00.65 # Mc/sec: 29823.05 // Query: T182996_2 [L=6776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 724 (0.0444008); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.37s 00:00:02.19 Elapsed: 00:00:00.66 # Mc/sec: 29371.19 // Query: T182996_3 [L=6775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.03 14.5 0.2 3.3e+02 1.4 0.0 5.7 8 DUF3809 Protein of unknown function (DUF3809) Domain annotation for each model (and alignments): >> DUF3809 Protein of unknown function (DUF3809) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.22 3.5e+03 100 121 .. 5380 5401 .. 5373 5404 .. 0.82 2 ? -1.4 0.0 0.14 2.3e+03 89 120 .. 5413 5444 .. 5390 5445 .. 0.84 3 ? 0.6 0.0 0.035 5.7e+02 89 121 .. 5457 5489 .. 5453 5495 .. 0.89 4 ? 0.4 0.0 0.041 6.7e+02 88 121 .. 5500 5533 .. 5477 5538 .. 0.85 5 ? -1.0 0.0 0.11 1.9e+03 94 121 .. 5550 5577 .. 5540 5582 .. 0.82 6 ? 1.0 0.0 0.026 4.2e+02 88 121 .. 5588 5621 .. 5563 5625 .. 0.86 7 ? -0.8 0.0 0.095 1.5e+03 88 121 .. 5632 5665 .. 5608 5669 .. 0.79 8 ? 1.4 0.0 0.02 3.3e+02 88 121 .. 5676 5709 .. 5650 5729 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.22 EEEEEEE-------HHHHHHHH CS DUF3809 100 elelrvhlslPegekwGGaAfe 121 + rv+++ Pe+ ++ G Af T182996_3 5380 PRRQRVYVRAPESTHLAGSAFT 5401 55679***************96 PP == domain 2 score: -1.4 bits; conditional E-value: 0.14 EEE-CCCEEEEEEEEEEE-------HHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAf 120 a+ +++++++ + rv+l+ Pe+ ++ G Af T182996_3 5413 ARLRQSARVHAPRRQRVYLRAPESTDLAGSAF 5444 555667778888889****************9 PP == domain 3 score: 0.6 bits; conditional E-value: 0.035 EEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 89 aeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182996_3 5457 ARLRESSRVHAPRRQRVYVRAPESTHLAGSAFT 5489 677888999999999****************96 PP == domain 4 score: 0.4 bits; conditional E-value: 0.041 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182996_3 5500 AARLRESSRVHAPRRQRVYIRAPESTDLAGSAFT 5533 577888999999999*****************96 PP == domain 5 score: -1.0 bits; conditional E-value: 0.11 CCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 94 ggelayelelrvhlslPegekwGGaAfe 121 +++++ + rv+++ Pe+ ++ G Af T182996_3 5550 SSRVHRPRRQRVYVRAPESTHLAGSAFT 5577 66677777889***************96 PP == domain 6 score: 1.0 bits; conditional E-value: 0.026 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af+ T182996_3 5588 AARLRESSRVHTPRRQRVYIRAPESTDLAGSAFR 5621 57788899999999******************97 PP == domain 7 score: -0.8 bits; conditional E-value: 0.095 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +++++++ + rv+++ Pe+ ++ G Af T182996_3 5632 AARLRQSARVHGPRRQRVYVRAPESTHLAGSAFT 5665 56666677777778889***************96 PP == domain 8 score: 1.4 bits; conditional E-value: 0.02 EEEE-CCCEEEEEEEEEEE-------HHHHHHHH CS DUF3809 88 raeveeggelayelelrvhlslPegekwGGaAfe 121 a+ +e+++++ + rv+++ Pe+ ++ G Af T182996_3 5676 AARLRESSRVHTPRRQRVYIRAPESTHLAGSAFT 5709 57788899999999******************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.45u 0.36s 00:00:01.81 Elapsed: 00:00:00.60 # Mc/sec: 32303.54 // Query: T220591_1 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 8742.04 // Query: T220591_2 [L=1589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1502 (0.0921133); expected 326.1 (0.02) Passed bias filter: 448 (0.0274745); expected 326.1 (0.02) Passed Vit filter: 208 (0.012756); expected 16.3 (0.001) Passed Fwd filter: 68 (0.00417024); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.44s 00:00:02.08 Elapsed: 00:00:00.67 # Mc/sec: 6784.86 // Query: T220591_3 [L=1588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 9086.00 // Query: T194079_1 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-75 246.8 71.7 1.6e-08 34.5 0.5 12.0 12 zf-H2C2_2 Zinc-finger double domain 6.3e-55 180.6 68.6 1.5e-06 28.2 2.1 11.2 10 zf-C2H2 Zinc finger, C2H2 type 2.6e-24 83.6 66.4 0.0028 18.2 1.2 11.6 10 zf-C2H2_4 C2H2-type zinc finger 1.1e-12 47.4 60.1 0.0038 17.0 1.5 11.0 10 zf-C2H2_6 C2H2-type zinc finger 5.5e-07 29.5 48.1 0.045 13.7 2.7 6.8 8 Zn-ribbon_8 Zinc ribbon domain 1.7e-05 24.6 41.8 1.3 9.0 0.2 10.6 10 XPA_N XPA protein N-terminal ------ inclusion threshold ------ 0.31 10.7 42.4 0.61 9.8 0.7 9.2 9 zf-C2H2_11 zinc-finger C2H2-type 0.54 10.9 41.7 0.32 11.6 3.6 5.5 5 zinc_ribbon_15 zinc-ribbon family Domain annotation for each model (and alignments): >> zf-H2C2_2 Zinc-finger double domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.6 0.6 0.00013 0.27 4 26 .] 634 656 .. 632 656 .. 0.80 2 ! 31.1 0.2 9.3e-11 1.9e-07 2 25 .. 660 683 .. 659 684 .. 0.92 3 ! 29.8 3.9 2.4e-10 4.8e-07 1 26 [] 687 712 .. 687 712 .. 0.95 4 ! 29.0 0.2 4.1e-10 8.4e-07 1 25 [. 715 739 .. 715 740 .. 0.94 5 ! 33.3 0.3 1.8e-11 3.8e-08 2 25 .. 744 767 .. 743 768 .. 0.94 6 ! 26.3 0.2 2.9e-09 6e-06 2 25 .. 772 795 .. 772 796 .. 0.95 7 ! 31.0 0.1 1e-10 2.1e-07 2 25 .. 800 823 .. 799 824 .. 0.92 8 ! 32.2 0.3 4.2e-11 8.6e-08 1 25 [. 827 851 .. 827 852 .. 0.96 9 ! 34.5 0.5 7.8e-12 1.6e-08 1 25 [. 855 879 .. 855 880 .. 0.94 10 ! 33.5 2.4 1.6e-11 3.2e-08 1 25 [. 883 907 .. 883 908 .. 0.95 11 ? -0.4 0.1 0.84 1.7e+03 1 13 [. 911 923 .. 911 928 .. 0.83 12 ? -3.4 0.7 7.8 1.6e+04 5 11 .. 940 946 .. 939 946 .. 0.90 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00013 zf-H2C2_2 4 rHlrkHtgekpyeCplCdkaFkt 26 rH r g+kp++C +C kaF++ T194079_1 634 RHERICAGKKPWKCNECEKAFSY 656 45555559*************85 PP == domain 2 score: 31.1 bits; conditional E-value: 9.3e-11 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 ++ H r HtgekpyeC +C+kaF+ T194079_1 660 FVLHQRIHTGEKPYECNECGKAFS 683 677********************8 PP == domain 3 score: 29.8 bits; conditional E-value: 2.4e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +L+ H r HtgekpyeC +C+kaF++ T194079_1 687 HLTLHQRIHTGEKPYECHECGKAFSH 712 6899********************97 PP == domain 4 score: 29.0 bits; conditional E-value: 4.1e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L rH HtgekpyeC +C+kaF+ T194079_1 715 ALIRHHIIHTGEKPYECNECGKAFN 739 588*********************7 PP == domain 5 score: 33.3 bits; conditional E-value: 1.8e-11 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L++H r HtgekpyeC +C+kaF+ T194079_1 744 LTQHQRIHTGEKPYECNECGKAFS 767 89*********************8 PP == domain 6 score: 26.3 bits; conditional E-value: 2.9e-09 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L++H Htgekpy+C +C+kaF+ T194079_1 772 LTQHQVIHTGEKPYKCNECGKAFS 795 789********************6 PP == domain 7 score: 31.0 bits; conditional E-value: 1e-10 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L +H r+Htge+pyeC +C+kaF T194079_1 800 LIQHQRTHTGERPYECNECGKAFG 823 678********************7 PP == domain 8 score: 32.2 bits; conditional E-value: 4.2e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H r+Htgekpy+C C+kaF+ T194079_1 827 ALTQHQRTHTGEKPYKCNDCAKAFS 851 699*********************6 PP == domain 9 score: 34.5 bits; conditional E-value: 7.8e-12 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L rH r+Htgekpy+C+ C+kaF+ T194079_1 855 ALIRHQRTHTGEKPYKCKDCGKAFS 879 688*********************8 PP == domain 10 score: 33.5 bits; conditional E-value: 1.6e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H ++Htgekpy+C++C+kaF+ T194079_1 883 SLTKHQKTHTGEKPYKCKECGKAFS 907 599*********************8 PP == domain 11 score: -0.4 bits; conditional E-value: 0.84 zf-H2C2_2 1 nLrrHlrkHtgek 13 +L++H ++H g k T194079_1 911 SLSQHQKTHAGVK 923 599******9876 PP == domain 12 score: -3.4 bits; conditional E-value: 7.8 zf-H2C2_2 5 HlrkHtg 11 H r Htg T194079_1 940 HKRIHTG 946 ******8 PP >> zf-C2H2 Zinc finger, C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.3 1.1e-05 0.022 2 23 .] 646 667 .. 645 667 .. 0.97 2 ! 22.3 0.7 5.3e-08 0.00011 1 23 [] 673 695 .. 673 695 .. 0.98 3 ! 20.3 3.0 2.3e-07 0.00046 1 23 [] 701 723 .. 701 723 .. 0.97 4 ! 24.6 0.5 1e-08 2.1e-05 1 23 [] 729 751 .. 729 751 .. 0.98 5 ! 17.6 0.3 1.7e-06 0.0035 1 23 [] 757 779 .. 757 779 .. 0.96 6 ! 25.7 0.4 4.5e-09 9.2e-06 1 23 [] 785 807 .. 785 807 .. 0.99 7 ! 20.7 1.2 1.7e-07 0.00035 1 23 [] 813 835 .. 813 835 .. 0.99 8 ! 24.4 0.6 1.2e-08 2.4e-05 1 23 [] 841 863 .. 841 863 .. 0.99 9 ! 28.2 2.1 7.3e-10 1.5e-06 1 23 [] 869 891 .. 869 891 .. 0.99 10 ! 24.5 1.5 1.1e-08 2.2e-05 1 23 [] 897 919 .. 897 919 .. 0.99 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.1e-05 zf-C2H2 2 kCpdCgksFkrksnLkrHirtH 23 kC++C k F+ s ++ H+r+H T194079_1 646 KCNECEKAFSYYSAFVLHQRIH 667 8********************9 PP == domain 2 score: 22.3 bits; conditional E-value: 5.3e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ +L+ H+r+H T194079_1 673 YECNECGKAFSQSIHLTLHQRIH 695 99********************9 PP == domain 3 score: 20.3 bits; conditional E-value: 2.3e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++s L rH +H T194079_1 701 YECHECGKAFSHRSALIRHHIIH 723 99*****************9998 PP == domain 4 score: 24.6 bits; conditional E-value: 1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++s L++H+r+H T194079_1 729 YECNECGKAFNQSSYLTQHQRIH 751 99********************9 PP == domain 5 score: 17.6 bits; conditional E-value: 1.7e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ L++H+ +H T194079_1 757 YECNECGKAFSQSTFLTQHQVIH 779 99*****************9888 PP == domain 6 score: 25.7 bits; conditional E-value: 4.5e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC++Cgk F+++s L +H+rtH T194079_1 785 YKCNECGKAFSDRSGLIQHQRTH 807 9*********************9 PP == domain 7 score: 20.7 bits; conditional E-value: 1.7e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F s L++H+rtH T194079_1 813 YECNECGKAFGYCSALTQHQRTH 835 99********************9 PP == domain 8 score: 24.4 bits; conditional E-value: 1.2e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC+dC k F+++s L rH+rtH T194079_1 841 YKCNDCAKAFSDRSALIRHQRTH 863 9*********************9 PP == domain 9 score: 28.2 bits; conditional E-value: 7.3e-10 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC+dCgk F+++s+L++H++tH T194079_1 869 YKCKDCGKAFSQSSSLTKHQKTH 891 9*********************9 PP == domain 10 score: 24.5 bits; conditional E-value: 1.1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 ykC++Cgk F+++s+L +H++tH T194079_1 897 YKCKECGKAFSQSSSLSQHQKTH 919 9*********************9 PP >> zf-C2H2_4 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.6 0.006 12 2 23 .. 646 667 .. 645 668 .. 0.91 2 ! 7.5 0.6 0.0039 8 1 23 [. 673 695 .. 673 696 .. 0.92 3 ! 10.0 2.3 0.00062 1.3 1 23 [. 701 723 .. 701 724 .. 0.87 4 ! 11.3 0.4 0.00023 0.47 1 23 [. 729 751 .. 729 752 .. 0.92 5 ! 9.4 0.4 0.00093 1.9 1 23 [. 757 779 .. 757 780 .. 0.86 6 ! 17.3 0.3 2.7e-06 0.0055 1 23 [. 785 807 .. 785 808 .. 0.97 7 ! 13.0 1.1 6.7e-05 0.14 1 23 [. 813 835 .. 813 836 .. 0.96 8 ! 15.3 0.4 1.2e-05 0.024 1 23 [. 841 863 .. 841 864 .. 0.97 9 ! 16.7 1.6 4.3e-06 0.0088 1 23 [. 869 891 .. 869 892 .. 0.97 10 ! 18.2 1.2 1.4e-06 0.0028 1 23 [. 897 919 .. 897 920 .. 0.97 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.006 zf-C2H2_4 2 kCpiCgksFsskkaLlrHlkth 23 kC C k Fs ++a+ H + h T194079_1 646 KCNECEKAFSYYSAFVLHQRIH 667 8********99999999*9988 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0039 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs + +L H + h T194079_1 673 YECNECGKAFSQSIHLTLHQRIH 695 89********9999999999988 PP == domain 3 score: 10.0 bits; conditional E-value: 0.00062 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cgk Fs ++aL rH h T194079_1 701 YECHECGKAFSHRSALIRHHIIH 723 89********9999998887666 PP == domain 4 score: 11.3 bits; conditional E-value: 0.00023 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F+ ++ L +H + h T194079_1 729 YECNECGKAFNQSSYLTQHQRIH 751 89********888889****998 PP == domain 5 score: 9.4 bits; conditional E-value: 0.00093 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs ++ L +H h T194079_1 757 YECNECGKAFSQSTFLTQHQVIH 779 89********77777899*8877 PP == domain 6 score: 17.3 bits; conditional E-value: 2.7e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC Cgk Fs++++L +H +th T194079_1 785 YKCNECGKAFSDRSGLIQHQRTH 807 89********************9 PP == domain 7 score: 13.0 bits; conditional E-value: 6.7e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F ++aL +H +th T194079_1 813 YECNECGKAFGYCSALTQHQRTH 835 89********************9 PP == domain 8 score: 15.3 bits; conditional E-value: 1.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC C k Fs+++aL rH +th T194079_1 841 YKCNDCAKAFSDRSALIRHQRTH 863 89********************9 PP == domain 9 score: 16.7 bits; conditional E-value: 4.3e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC+ Cgk Fs +++L +H kth T194079_1 869 YKCKDCGKAFSQSSSLTKHQKTH 891 89********************9 PP == domain 10 score: 18.2 bits; conditional E-value: 1.4e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 +kC+ Cgk Fs +++L++H kth T194079_1 897 YKCKECGKAFSQSSSLSQHQKTH 919 89********************9 PP >> zf-C2H2_6 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.5 0.3 0.0075 15 3 16 .. 646 659 .. 645 665 .. 0.91 2 ! 7.1 0.3 0.0024 4.8 2 12 .. 673 683 .. 672 684 .. 0.91 3 ! 7.8 0.9 0.0014 2.9 2 18 .. 701 717 .. 700 723 .. 0.79 4 ! 7.2 0.2 0.0022 4.5 2 12 .. 729 739 .. 728 741 .. 0.92 5 ! 7.1 0.3 0.0024 4.8 2 12 .. 757 767 .. 756 768 .. 0.91 6 ! 9.1 0.3 0.00058 1.2 2 24 .. 785 807 .. 784 810 .. 0.88 7 ! 17.0 1.5 1.9e-06 0.0038 2 24 .. 813 835 .. 812 838 .. 0.93 8 ? 4.0 0.1 0.023 47 2 24 .. 841 863 .. 840 866 .. 0.92 9 ! 9.9 2.0 0.00031 0.63 2 24 .. 869 891 .. 868 894 .. 0.93 10 ! 9.6 1.7 0.00041 0.83 2 24 .. 897 919 .. 896 922 .. 0.91 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0075 zf-C2H2_6 3 eCdeCsksFpSlqa 16 +C+eC k F+++ a T194079_1 646 KCNECEKAFSYYSA 659 7**********965 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0024 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194079_1 673 YECNECGKAFS 683 9********96 PP == domain 3 score: 7.8 bits; conditional E-value: 0.0014 zf-C2H2_6 2 heCdeCsksFpSlqaLg 18 +eC+eC+k F+ aL+ T194079_1 701 YECHECGKAFSHRSALI 717 9*********8655555 PP == domain 4 score: 7.2 bits; conditional E-value: 0.0022 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194079_1 729 YECNECGKAFN 739 9********96 PP == domain 5 score: 7.1 bits; conditional E-value: 0.0024 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T194079_1 757 YECNECGKAFS 767 9********96 PP == domain 6 score: 9.1 bits; conditional E-value: 0.00058 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+k F+ L+ H ++H T194079_1 785 YKCNECGKAFSDRSGLIQHQRTH 807 9*********9999999999988 PP == domain 7 score: 17.0 bits; conditional E-value: 1.9e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+eC+k F + aL+ H ++H T194079_1 813 YECNECGKAFGYCSALTQHQRTH 835 9********************** PP == domain 8 score: 4.0 bits; conditional E-value: 0.023 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C k F+ aL+ H ++H T194079_1 841 YKCNDCAKAFSDRSALIRHQRTH 863 9*********************9 PP == domain 9 score: 9.9 bits; conditional E-value: 0.00031 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C+k F+ +L++H k+H T194079_1 869 YKCKDCGKAFSQSSSLTKHQKTH 891 9********************** PP == domain 10 score: 9.6 bits; conditional E-value: 0.00041 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+k F+ +L H k+H T194079_1 897 YKCKECGKAFSQSSSLSQHQKTH 919 9**********999999999999 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 2.0 0.0014 2.9 7 36 .. 646 682 .. 645 686 .. 0.86 2 ! 10.9 4.8 0.00017 0.34 6 35 .. 673 709 .. 672 715 .. 0.90 3 ? 4.8 0.7 0.014 28 6 18 .. 701 713 .. 699 722 .. 0.85 4 ! 13.7 2.7 2.2e-05 0.045 6 35 .. 729 765 .. 727 770 .. 0.92 5 ! 10.3 3.5 0.00027 0.55 6 34 .. 785 820 .. 784 823 .. 0.90 6 ! 10.1 2.6 0.00031 0.64 6 35 .. 841 877 .. 840 881 .. 0.89 7 ! 13.5 4.0 2.7e-05 0.054 6 35 .. 869 905 .. 867 909 .. 0.91 8 ! 7.0 0.4 0.0029 5.9 6 23 .. 897 914 .. 896 919 .. 0.79 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0014 Zn-ribbon_8 7 rCeaCghefe......vlqsisdaplta.CPeCgsev 36 +C++C + f q+i+ +++ C eCg++ T194079_1 646 KCNECEKAFSyysafvLHQRIHTGEKPYeCNECGKAF 682 7**************87788888889999****9865 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00017 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f q+i+ +++ C eCg++ T194079_1 673 YECNECGKAFSqsihltLHQRIHTGEKPYeCHECGKA 709 9***************99999998889999*****84 PP == domain 3 score: 4.8 bits; conditional E-value: 0.014 Zn-ribbon_8 6 YrCeaCghefevl 18 Y+C++Cg+ f ++ T194079_1 701 YECHECGKAFSHR 713 9*********865 PP == domain 4 score: 13.7 bits; conditional E-value: 2.2e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f+ + q+i+ +++ C eCg++ T194079_1 729 YECNECGKAFNqssyltQHQRIHTGEKPYeCNECGKA 765 9****************99****8889999*****85 PP == domain 5 score: 10.3 bits; conditional E-value: 0.00027 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++Cg+ f + q+ + + + C eCg+ T194079_1 785 YKCNECGKAFSdrsgliQHQRTHTGERPYeCNECGK 820 9**************998888888888899****97 PP == domain 6 score: 10.1 bits; conditional E-value: 0.00031 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++C + f + q+ + +++ C++Cg++ T194079_1 841 YKCNDCAKAFSdrsaliRHQRTHTGEKPYkCKDCGKA 877 9*************9988888888888999****985 PP == domain 7 score: 13.5 bits; conditional E-value: 2.7e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++Cg+ f + q+ + +++ C+eCg++ T194079_1 869 YKCKDCGKAFSqsssltKHQKTHTGEKPYkCKECGKA 905 9**********9999999999998889999*****85 PP == domain 8 score: 7.0 bits; conditional E-value: 0.0029 Zn-ribbon_8 6 YrCeaCghefevlqsisd 23 Y+C++Cg+ f + s s+ T194079_1 897 YKCKECGKAFSQSSSLSQ 914 9*********97776664 PP >> XPA_N XPA protein N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.2 0.092 1.9e+02 3 11 .. 646 654 .. 644 658 .. 0.88 2 ! 6.2 0.1 0.0049 9.9 3 14 .. 674 685 .. 672 689 .. 0.88 3 ? 3.2 0.0 0.042 86 3 12 .. 702 711 .. 700 719 .. 0.86 4 ! 9.0 0.2 0.00062 1.3 3 18 .. 730 745 .. 728 748 .. 0.85 5 ! 7.6 0.1 0.0017 3.6 3 18 .. 758 773 .. 756 777 .. 0.85 6 ? 5.0 0.1 0.012 24 3 13 .. 786 796 .. 784 801 .. 0.92 7 ? 2.1 0.9 0.091 1.8e+02 3 11 .. 814 822 .. 812 825 .. 0.89 8 ? 1.8 0.0 0.11 2.3e+02 3 13 .. 842 852 .. 840 859 .. 0.88 9 ? 4.7 0.4 0.014 29 3 14 .. 870 881 .. 868 886 .. 0.90 10 ! 6.2 0.5 0.0046 9.4 3 14 .. 898 909 .. 896 914 .. 0.91 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.092 XPA_N 3 kCeeCgkef 11 kC eC+k+f T194079_1 646 KCNECEKAF 654 8*******9 PP == domain 2 score: 6.2 bits; conditional E-value: 0.0049 XPA_N 3 kCeeCgkefldS 14 +C eCgk+f +S T194079_1 674 ECNECGKAFSQS 685 8********999 PP == domain 3 score: 3.2 bits; conditional E-value: 0.042 XPA_N 3 kCeeCgkefl 12 +C eCgk+f T194079_1 702 ECHECGKAFS 711 7*******95 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00062 XPA_N 3 kCeeCgkefldSyLld 18 +C eCgk+f +S +l+ T194079_1 730 ECNECGKAFNQSSYLT 745 8********9998776 PP == domain 5 score: 7.6 bits; conditional E-value: 0.0017 XPA_N 3 kCeeCgkefldSyLld 18 +C eCgk+f +S l+ T194079_1 758 ECNECGKAFSQSTFLT 773 8**********97665 PP == domain 6 score: 5.0 bits; conditional E-value: 0.012 XPA_N 3 kCeeCgkefld 13 kC eCgk+f d T194079_1 786 KCNECGKAFSD 796 8********98 PP == domain 7 score: 2.1 bits; conditional E-value: 0.091 XPA_N 3 kCeeCgkef 11 +C eCgk+f T194079_1 814 ECNECGKAF 822 8*******9 PP == domain 8 score: 1.8 bits; conditional E-value: 0.11 XPA_N 3 kCeeCgkefld 13 kC +C k+f d T194079_1 842 KCNDCAKAFSD 852 8********98 PP == domain 9 score: 4.7 bits; conditional E-value: 0.014 XPA_N 3 kCeeCgkefldS 14 kC++Cgk+f +S T194079_1 870 KCKDCGKAFSQS 881 8********998 PP == domain 10 score: 6.2 bits; conditional E-value: 0.0046 XPA_N 3 kCeeCgkefldS 14 kC+eCgk+f +S T194079_1 898 KCKECGKAFSQS 909 8********998 PP >> zf-C2H2_11 zinc-finger C2H2-type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.3 0.018 36 6 26 .. 674 694 .. 671 695 .. 0.91 2 ? 5.9 1.6 0.0049 10 6 26 .. 702 722 .. 699 723 .. 0.91 3 ? 0.4 0.1 0.25 5.2e+02 6 26 .. 730 750 .. 728 751 .. 0.88 4 ? 3.2 0.1 0.034 69 6 26 .. 758 778 .. 755 779 .. 0.89 5 ? 1.8 0.1 0.094 1.9e+02 5 20 .. 785 800 .. 782 805 .. 0.78 6 ? -2.5 0.9 2 4.1e+03 7 23 .. 815 831 .. 813 833 .. 0.75 7 ? 0.9 0.0 0.17 3.6e+02 5 24 .. 841 860 .. 838 862 .. 0.91 8 ? 8.6 0.3 0.00069 1.4 5 23 .. 869 887 .. 866 889 .. 0.93 9 ? 9.8 0.7 0.0003 0.61 5 23 .. 897 915 .. 894 917 .. 0.93 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.018 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ ++ L H +I T194079_1 674 ECNECGKAFSQSIHLTLHQRI 694 5**************999988 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0049 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ +L RH +I T194079_1 702 ECHECGKAFSHRSALIRHHII 722 5*****************877 PP == domain 3 score: 0.4 bits; conditional E-value: 0.25 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f + L H +I T194079_1 730 ECNECGKAFNQSSYLTQHQRI 750 5********999999999887 PP == domain 4 score: 3.2 bits; conditional E-value: 0.034 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ + L H I T194079_1 758 ECNECGKAFSQSTFLTQHQVI 778 5************99999766 PP == domain 5 score: 1.8 bits; conditional E-value: 0.094 zf-C2H2_11 5 cqCleCGlcftSqlsL 20 ++C eCG f+ L T194079_1 785 YKCNECGKAFSDRSGL 800 69*******9966555 PP == domain 6 score: -2.5 bits; conditional E-value: 2 zf-C2H2_11 7 CleCGlcftSqlsLsRH 23 C eCG f +L H T194079_1 815 CNECGKAFGYCSALTQH 831 *****999766666666 PP == domain 7 score: 0.9 bits; conditional E-value: 0.17 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHl 24 ++C +C f+ +L RH T194079_1 841 YKCNDCAKAFSDRSALIRHQ 860 69*****************5 PP == domain 8 score: 8.6 bits; conditional E-value: 0.00069 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 ++C +CG f+ + sL +H T194079_1 869 YKCKDCGKAFSQSSSLTKH 887 69***************** PP == domain 9 score: 9.8 bits; conditional E-value: 0.0003 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 ++C eCG f+ + sLs H T194079_1 897 YKCKECGKAFSQSSSLSQH 915 69***************** PP >> zinc_ribbon_15 zinc-ribbon family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 3.7 0.0041 8.3 18 77 .. 651 712 .. 637 719 .. 0.73 2 ? 7.7 2.2 0.0027 5.5 34 78 .. 725 769 .. 715 775 .. 0.84 3 ? 3.4 5.9 0.057 1.2e+02 35 74 .. 782 821 .. 769 855 .. 0.79 4 ? 8.8 1.6 0.0012 2.4 34 78 .. 837 881 .. 829 884 .. 0.87 5 ? 11.6 3.6 0.00016 0.32 32 78 .. 863 909 .. 855 915 .. 0.87 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0041 zinc_ribbon_15 18 kkvlklf..fipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 +k+++ + f+ ++++ ++ + c++C++ +++s +l+ + + ++ ++ +eC++Cgk+ ++ T194079_1 651 EKAFSYYsaFVLHQRIHTGEKPYECNECGKAFSQSIHLTLHQRIHTGEKPYECHECGKAFSH 712 33333332255566788888889***********9988877777788889*******98776 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0027 zinc_ribbon_15 34 kkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ + c++C++ +++s+ l+++ + ++ ++ +eC++Cgk+ +++ T194079_1 725 GEKPYECNECGKAFNQSSYLTQHQRIHTGEKPYECNECGKAFSQS 769 455679***********98888888888899********988765 PP == domain 3 score: 3.4 bits; conditional E-value: 0.057 zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkessekkeCknCgke 74 ++ ++c++C++ +++++ l ++ ++++ ++ +eC++Cgk+ T194079_1 782 EKPYKCNECGKAFSDRSGLIQHQRTHTGERPYECNECGKA 821 4556899999999999888888888888888999999875 PP == domain 4 score: 8.8 bits; conditional E-value: 0.0012 zinc_ribbon_15 34 kkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ ++c++C + +++++ l ++ ++++ ++ ++Ck+Cgk+ +++ T194079_1 837 GEKPYKCNDCAKAFSDRSALIRHQRTHTGEKPYKCKDCGKAFSQS 881 556679************9999999999999********998876 PP == domain 5 score: 11.6 bits; conditional E-value: 0.00016 zinc_ribbon_15 32 kkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeveee 78 ++ ++ ++c++C++ +++s++l+k+ ++++ ++ ++Ck+Cgk+ +++ T194079_1 863 HTGEKPYKCKDCGKAFSQSSSLTKHQKTHTGEKPYKCKECGKAFSQS 909 56667789****************999999999********998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.60 # Mc/sec: 19358.28 // Query: T194079_2 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.56 # Mc/sec: 20377.14 // Query: T194079_3 [L=4060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.28s 00:00:01.37 Elapsed: 00:00:00.56 # Mc/sec: 20741.02 // Query: T353303_1 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 10893.59 // Query: T353303_2 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10482.51 // Query: T353303_3 [L=1942] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1942 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 10482.51 // Query: T313528_1 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1294 (0.0793573); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 81 (0.0049675); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 6148.27 // Query: T313528_2 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1789 (0.109714); expected 326.1 (0.02) Passed bias filter: 386 (0.0236723); expected 326.1 (0.02) Passed Vit filter: 238 (0.0145959); expected 16.3 (0.001) Passed Fwd filter: 52 (0.00318901); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.47s 00:00:02.45 Elapsed: 00:00:00.70 # Mc/sec: 5006.45 // Query: T313528_3 [L=1225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1225 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1543 (0.0946277); expected 326.1 (0.02) Passed bias filter: 304 (0.0186434); expected 326.1 (0.02) Passed Vit filter: 144 (0.00883111); expected 16.3 (0.001) Passed Fwd filter: 30 (0.00183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.31s 00:00:01.63 Elapsed: 00:00:00.60 # Mc/sec: 5840.86 // Query: T214277_1 [L=2224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.51 # Mc/sec: 12475.46 // Query: T214277_2 [L=2224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11568.16 // Query: T214277_3 [L=2224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 10430.30 // Query: T130235_1 [L=783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.61 # Mc/sec: 3672.18 // Query: T130235_2 [L=783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.71 # Mc/sec: 3154.97 // Query: T130235_3 [L=783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-12 45.2 0.0 1.5e-11 44.6 0.0 1.3 1 PH PH domain Domain annotation for each model (and alignments): >> PH PH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.6 0.0 9.3e-16 1.5e-11 3 100 .. 498 590 .. 496 594 .. 0.89 Alignments for each domain: == domain 1 score: 44.6 bits; conditional E-value: 9.3e-16 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESST.TCTTCSSECEEEESTTEEEEEEEETTSSSSTSEEEEEESTSSS..TEEEEEEESSHHHHHHHHHH CS PH 3 keGwLlkkgsgkkkswkkrwfvLkdsellyyknd.ksekdkepkgsislsnceivevvatedpkrkfcfelrtverng..srtyllqasseeerkeWika 99 eG+Llkkg ++ s+++rwf+L+ ++ll+y ++ d+ p i l+nc+++ + ++ +++ f + t+ +g r y l+a+++ee+++W+ a T130235_3 498 QEGILLKKGTRNL-SYQRRWFILR-GNLLFYLEH*T---DHAPLSLILLENCQVEPHL---KAAEPYAFTILTPGVEGtgGRAYKLAAETQEELETWLWA 589 69***********.**********.88888888886...89**************854...999*******8887777546****************977 PP H CS PH 100 i 100 + T130235_3 590 L 590 7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (783 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.59 # Mc/sec: 3796.66 // Query: T089858_1 [L=3099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.87 # Mc/sec: 10190.47 // Query: T089858_2 [L=3099] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3099 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.70 # Mc/sec: 12665.30 // Query: T089858_3 [L=3098] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3098 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.34s 00:00:01.68 Elapsed: 00:00:00.64 # Mc/sec: 13848.21 // Query: T090267_1 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:00.73 # Mc/sec: 6458.42 // Query: T090267_2 [L=1648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.76 # Mc/sec: 6203.48 // Query: T090267_3 [L=1647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.66 # Mc/sec: 7139.07 // Query: T090243_1 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.66 # Mc/sec: 13112.14 // Query: T090243_2 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.32s 00:00:01.60 Elapsed: 00:00:00.73 # Mc/sec: 11854.81 // Query: T090243_3 [L=3025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 11538.68 // Query: T259468_1 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.72 # Mc/sec: 9114.92 // Query: T259468_2 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 11719.19 // Query: T259468_3 [L=2294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.27s 00:00:01.33 Elapsed: 00:00:00.83 # Mc/sec: 7906.92 // Query: T210449_1 [L=683] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (683 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 753 (0.0461793); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3006.07 // Query: T210449_2 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 531 (0.0325647); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 3096.96 // Query: T210449_3 [L=682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 939 (0.0575862); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.74 # Mc/sec: 2636.60 // Query: T229999_1 [L=1397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-12 47.1 0.0 6e-12 45.6 0.0 1.7 1 TMEM191C TMEM191C family ------ inclusion threshold ------ 2.8 7.8 4.5 1.9 8.3 0.5 2.1 2 DUF1664 Protein of unknown function (DUF1664) 3.8 8.0 9.4 8.6 6.9 9.4 1.6 1 DUF883 Bacterial protein of unknown function (DUF883) 6.8 7.2 10.6 0.89 10.0 4.7 2.2 2 Syntaxin-6_N Syntaxin 6, N-terminal 7.2 4.9 26.8 10 4.4 26.8 1.1 1 CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 0.0 1.8e-15 6e-12 16 53 .. 540 577 .. 536 584 .. 0.93 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 1.8e-15 TMEM191C 16 lcdsqlrrvqdcagslmeevaradcekrlfggagagal 53 cd+qlr vq++++slmee+arad+e+rlfgg++a a+ T229999_1 540 RCDGQLRGVQYSTESLMEEMARADRETRLFGGPRALAI 577 69********************************9887 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.4 0.18 6e+02 48 74 .. 368 394 .. 341 434 .. 0.74 2 ? 8.3 0.5 0.00059 1.9 47 101 .. 435 489 .. 424 500 .. 0.86 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.18 DUF1664 48 kqleqvseslaatkrhLsqridrvdkk 74 ++le+++ l+a + L+qr+++++++ T229999_1 368 QELEKLMRGLEAESESLNQRLQDLSER 394 567777777777777777777777655 PP == domain 2 score: 8.3 bits; conditional E-value: 0.00059 DUF1664 47 skqleqvseslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseike 101 + leq s +l+++ ++Ls+++ + +l++qk + +++++++ +++++l+ ++ T229999_1 435 KEYLEQHSRQLQEQWEELSSQLFYYGGELQSQKSTEQQLAAQLVTLQNELELAET 489 6789*******************************************99987665 PP >> DUF883 Bacterial protein of unknown function (DUF883) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 9.4 0.0026 8.6 2 66 .. 383 450 .. 346 455 .. 0.87 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0026 DUF883 2 eleaeleslladleellkeaadeageeaeelReraeealerarerlsdaeea...vaerakeaaeaad 66 +l++ l++l + ++ll++ ++ a+ e+Re a+e++er+r rl++ae++ ++++++++ e+ + T229999_1 383 SLNQRLQDLSERERSLLRRRSQAAQPLQGEAREAARERAERVRRRLEEAERHkeyLEQHSRQLQEQWE 450 57788999999999999999999999999999999999999999999888765556777777766655 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 4.7 0.00027 0.89 16 97 .. 344 447 .. 340 448 .. 0.74 2 ? -0.4 3.9 0.49 1.6e+03 17 57 .. 442 484 .. 412 509 .. 0.54 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00027 Syntaxin-6_N 16 kleslyrrw.eelledtss..stseeldetrteLrkalrsiewdledLeetv...................riveknpskfkidekelsrrrafvee 90 ++ + +++ +l++d+++ ++++el+++++ L+++ +s+++ l+dL e +++++ ++++ + +e +r+++++e+ T229999_1 344 TAMAATQELlLQLQKDNRDgrQRKQELEKLMRGLEAESESLNQRLQDLSERErsllrrrsqaaqplqgearEAARERAERVRRRLEEAERHKEYLEQ 440 44444444424666666666568*************************9988555666666666666655555566778899999999999999999 PP Syntaxin-6_N 91 vreevke 97 ++++e T229999_1 441 HSRQLQE 447 9999875 PP == domain 2 score: -0.4 bits; conditional E-value: 0.49 Syntaxin-6_N 17 leslyrrweelledtsss.....tseeldetrteLrkalrsiewdl 57 ++l ++weel ++ + ++ ++t+++L ++l +++++l T229999_1 442 SRQLQEQWEELSSQ---LfyyggELQSQKSTEQQLAAQLVTLQNEL 484 23334444333322...02223344555555555555555555555 PP >> CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 26.8 0.0031 10 191 353 .. 339 507 .. 336 522 .. 0.78 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.0031 CALCOCO1 191 veelkeelkesrekveeleekqkelerlseelaeeksalleakeesearirELeeDiktltqraleketel.....eRlkerakkalaqrkeeeaerkql 285 + + ++++ ++e +l++ +++ ++ ++el + + l +++e ++r+++L e ++l +r + l e +era+++ ++++e e ++ l T229999_1 339 LGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLNQRLQDLSERERSLLRRRSQAAQPLqgearEAARERAERVRRRLEEAERHKEYL 438 556677777888888888888888888888998888888888888899999998888888776665554442222256899999**************** PP CALCOCO1 286 qakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttaqrkeaenEa.llkelrslqe 353 +++ +q +e+ ++ls++l + l+ +++ +qL ++ tl+++L+ a+ k a +E+ l+++ + e T229999_1 439 EQHSRQLQEQWEELSSQLFYYGGELQSQKSTEQQLAAQLVTLQNELELAETKCALQEEkLQQDALQTAE 507 **************************************************9988665505554444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1397 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1130 (0.0692996); expected 326.1 (0.02) Passed bias filter: 383 (0.0234883); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.77 # Mc/sec: 5190.36 // Query: T229999_2 [L=1396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.68 # Mc/sec: 5873.12 // Query: T229999_3 [L=1396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-27 94.0 8.0 1.1e-26 93.2 8.0 1.3 1 TMEM191C TMEM191C family Domain annotation for each model (and alignments): >> TMEM191C TMEM191C family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.2 8.0 6.6e-31 1.1e-26 51 121 .] 579 649 .. 568 649 .. 0.95 Alignments for each domain: == domain 1 score: 93.2 bits; conditional E-value: 6.6e-31 TMEM191C 51 galrlwalgalqtllllPlgflalpllylvlvkpdalrkglarlssdaalrrlrytlsPllelrarGllPa 121 + +r+++lgalq+ll+lPl+fl+l+ll++vl++p a++++l++l+s+++lrrlrytlsPllelra+GllP+ T229999_3 579 SPRRRCVLGALQVLLTLPLLFLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTLSPLLELRANGLLPT 649 5689******************************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 6656.20 // Query: T121534_1 [L=2171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 509 (0.0312155); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.66 # Mc/sec: 9410.40 // Query: T121534_2 [L=2171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-38 131.6 4.1 5e-38 130.7 4.1 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 8.1e-08 31.6 0.5 1.7e-07 30.5 0.5 1.6 1 DUF1725 Protein of unknown function (DUF1725) ------ inclusion threshold ------ 2 9.1 4.6 0.55 10.8 0.2 2.3 2 Psm4 Phenol-soluble modulin alpha 4 peptide Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.7 4.1 9.3e-42 5e-38 6 208 .. 887 1103 .. 882 1124 .. 0.92 Alignments for each domain: == domain 1 score: 130.7 bits; conditional E-value: 9.3e-42 .S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE CS RVT_1 6 pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafk 96 ++++Rpis++++d k+lnk++ + ++++kl +++q+gf pg + + ++ + ++++++ k k+++++++D +kaFd+++ ++ l++l++++ T121534_2 887 KENFRPISVINIDAKILNKILEn*iQ---QHIKKLTHHDQVGFIPGMQGWFNIhksiNIIHHINRTKDKNHMIISIDAEKAFDNIQQHFMLKTLNKLG 981 479*****************843324...688888*******************9988888888888899**************************** PP ET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHH CS RVT_1 97 vptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqell 184 + + +++i++++ ++++++ +n+++ e ++ k+g++qG+ lS llfn++++ l r +r++ ++v+l+++aDDi+++ ++ + q+ll T121534_2 982 IVGTYLKIIRAIYDKPTANIILNEQKLEAFPLKTGTRQGCLLSQLLFNIVLEVLARAIRQEKeikciqlgnEEVKLSLFADDIIVTLENlIISTQNLL 1079 *************************99*********************************99***************************7777***** PP HHHHHHHHHTT--BEGGG-EEE.. CS RVT_1 185 eaveewlkesglkinpeKtklvlf 208 + ++++ k sg+k n +K++++l+ T121534_2 1080 NLISNFSKVSGYKTNVQKSQAFLY 1103 *********************986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.5 3.1e-11 1.7e-07 1 19 [] 1599 1617 .. 1599 1617 .. 0.98 Alignments for each domain: == domain 1 score: 30.5 bits; conditional E-value: 3.1e-11 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM LE+IILS+ sQ T121534_2 1599 SFAGTWMNLETIILSKLSQ 1617 7*****************9 PP >> Psm4 Phenol-soluble modulin alpha 4 peptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.6 1.5 8.1e+03 7 14 .. 333 340 .. 329 342 .. 0.85 2 ? 10.8 0.2 0.0001 0.55 2 16 .. 981 995 .. 980 996 .. 0.92 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 1.5 Psm4 7 iiKiiKAi 14 i+Kii A+ T121534_2 333 IVKIINAM 340 99***985 PP == domain 2 score: 10.8 bits; conditional E-value: 0.0001 Psm4 2 AivGtiiKiiKAiiD 16 ivGt +Kii+Ai D T121534_2 981 GIVGTYLKIIRAIYD 995 69***********88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.64 # Mc/sec: 9704.47 // Query: T121534_3 [L=2171] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-76 257.1 11.3 1.1e-72 244.8 6.8 2.2 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.1 7e-07 0.011 36 79 .. 48 95 .. 37 106 .. 0.83 2 ! 244.8 6.8 7e-77 1.1e-72 168 368 .] 128 331 .. 112 331 .. 0.94 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 7e-07 XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXX CS Transposase_22 36 eldpdlkdflelriedikkd...fykelkelieskakele.alkekee 79 +++++d +e+ + +++++ + ++lke+++++ ke + +k ++e T121534_3 48 GTNWMENDIDEMTEVGFRRSvitNSSKLKEDVQAHRKEANiLEKRLDE 95 579****************85446789*************88898888 PP == domain 2 score: 244.8 bits; conditional E-value: 7e-77 HHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--.EEEEEESSHHH CS Transposase_22 168 erekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassr.hiivrttkvln 260 +ekr+k++eqslq+ d+vkrPnlrliGv es++e+++kle +l++i +enfPnl+++an++iqe++rtP+r++ + a + hiiv ++kv++ T121534_3 128 LEEKRVKRNEQSLQE-I*DYVKRPNLRLIGVLESDEENGTKLEKTLQDINQENFPNLARQANIQIQEMQRTPQRYSLRIA-TP*HIIVIFSKVEM 220 679***********8.6779*******************************************************98665.57889999****** PP HHHHHHHHHHHS.-EEETTE.EEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEE.TTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHH. CS Transposase_22 261 kdkilkavrekG.rvtlkGk.PirltadlsaetlkarrewtdviqilkekkfqPrll.yPaklsiiidGeikvfidktklrdylstrPalkrll. 351 k+k+l a+rekG t+k Pirltadlsaetlkarrew++++++lke++fqPr yPakls+i++Geik f dk+ lrd ++trPal++ll T121534_3 221 KEKVLTAAREKG*I-TYK-G*PIRLTADLSAETLKARREWGPIFNVLKENNFQPR-I*YPAKLSFISEGEIKSFTDKQTLRDLVTTRPALQELLl 312 ***********887.786.477*********************************.888*********************************752 PP TT..T-SSXSSXXXXXXXX CS Transposase_22 352 ke..knerkdryqaleqar 368 ke ++er++ yq+l++++ T121534_3 313 KEalNMERNNWYQPLQKHA 331 779*************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2171 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.64 # Mc/sec: 9704.47 // Query: T124703_1 [L=422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.57 # Mc/sec: 2081.50 // Query: T124703_2 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 2113.00 // Query: T124703_3 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.56 # Mc/sec: 2150.73 // Query: T099404_1 [L=2501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.75 # Mc/sec: 9539.91 // Query: T099404_2 [L=2501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 298 (0.0182755); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.34s 00:00:01.43 Elapsed: 00:00:00.80 # Mc/sec: 8943.67 // Query: T099404_3 [L=2501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.66 # Mc/sec: 10840.81 // Query: T190950_1 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 848 (0.0520054); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3446.62 // Query: T190950_2 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.63 # Mc/sec: 3446.62 // Query: T190950_3 [L=759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 842 (0.0516374); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3340.57 // Query: T323205_1 [L=1741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-53 177.5 439.7 1.3e-08 34.8 6.9 39.8 38 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.1 0.14 2.2e+03 38 47 .. 56 65 .. 55 69 .. 0.81 2 ? -0.2 0.0 0.065 1.1e+03 8 34 .. 69 94 .. 66 96 .. 0.86 3 ! 34.8 6.9 7.7e-13 1.3e-08 3 49 .. 96 141 .. 94 142 .. 0.96 4 ! 31.3 7.0 1e-11 1.6e-07 1 38 [. 147 183 .. 147 193 .. 0.93 5 ! 24.2 4.7 1.6e-09 2.5e-05 5 38 .. 194 226 .. 188 235 .. 0.92 6 ! 22.8 6.4 4.2e-09 6.9e-05 5 38 .. 238 270 .. 237 272 .. 0.95 7 ! 10.9 3.3 2.3e-05 0.37 1 34 [. 266 294 .. 266 305 .. 0.77 8 ! 22.9 16.3 4.1e-09 6.6e-05 1 49 [. 308 355 .. 308 356 .. 0.99 9 ! 8.8 1.6 0.0001 1.7 8 39 .. 369 399 .. 367 402 .. 0.85 10 ! 16.6 5.8 3.8e-07 0.0061 2 33 .. 394 424 .. 393 428 .. 0.96 11 ! 10.2 1.5 3.8e-05 0.61 18 50 .] 421 453 .. 421 453 .. 0.95 12 ! 13.3 0.5 4.1e-06 0.067 16 35 .. 481 500 .. 474 501 .. 0.92 13 ! 31.6 8.9 7.7e-12 1.3e-07 2 50 .] 500 547 .. 499 547 .. 0.97 14 ? -1.4 0.1 0.15 2.5e+03 9 25 .. 549 574 .. 548 577 .. 0.56 15 ? 0.3 2.6 0.045 7.4e+02 1 33 [. 595 627 .. 595 629 .. 0.91 16 ! 15.4 6.2 8.9e-07 0.014 4 44 .. 631 688 .. 631 688 .. 0.98 17 ! 22.3 1.9 6.1e-09 9.9e-05 25 50 .] 722 747 .. 719 747 .. 0.94 18 ! 5.0 0.8 0.0016 26 28 47 .. 777 796 .. 769 799 .. 0.85 19 ? 2.0 1.2 0.014 2.3e+02 7 27 .. 799 818 .. 797 823 .. 0.91 20 ? -0.6 1.3 0.091 1.5e+03 7 24 .. 820 836 .. 818 848 .. 0.74 21 ! 9.6 9.4 5.7e-05 0.93 6 38 .. 840 882 .. 836 888 .. 0.89 22 ! 10.7 6.3 2.7e-05 0.44 1 33 [. 890 921 .. 890 921 .. 0.95 23 ! 3.7 2.9 0.004 65 19 43 .. 928 953 .. 925 955 .. 0.80 24 ! 15.3 13.5 9.7e-07 0.016 1 38 [. 943 1000 .. 943 1009 .. 0.87 25 ? 2.0 14.4 0.014 2.3e+02 1 49 [. 996 1053 .. 996 1054 .. 0.95 26 ? -0.6 8.4 0.09 1.5e+03 7 41 .. 1075 1107 .. 1073 1107 .. 0.86 27 ? 0.4 11.5 0.044 7.1e+02 3 26 .. 1104 1126 .. 1093 1126 .. 0.92 28 ! 15.4 2.0 9.2e-07 0.015 14 36 .. 1137 1159 .. 1131 1164 .. 0.91 29 ! 2.8 0.1 0.0077 1.3e+02 27 39 .. 1162 1174 .. 1160 1178 .. 0.86 30 ! 6.1 11.8 0.00074 12 1 38 [. 1169 1215 .. 1169 1223 .. 0.85 31 ! 16.3 2.3 4.6e-07 0.0076 1 26 [. 1244 1268 .. 1244 1270 .. 0.95 32 ? -1.0 2.7 0.12 2e+03 1 18 [. 1277 1304 .. 1277 1311 .. 0.65 33 ! 3.1 0.9 0.0064 1e+02 8 27 .. 1384 1402 .. 1381 1404 .. 0.87 34 ! 11.6 10.6 1.3e-05 0.22 14 48 .. 1443 1489 .. 1438 1490 .. 0.74 35 ? -5.9 12.7 1 1.6e+04 9 45 .. 1493 1538 .. 1492 1544 .. 0.63 36 ? -4.8 14.3 1 1.6e+04 7 46 .. 1543 1595 .. 1541 1598 .. 0.80 37 ? 0.0 2.1 0.056 9.2e+02 16 34 .. 1609 1627 .. 1597 1633 .. 0.72 38 ! 22.9 3.2 3.9e-09 6.4e-05 2 36 .. 1639 1672 .. 1638 1679 .. 0.91 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.14 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323205_1 56 LPPGSLSRPR 65 6889999985 PP == domain 2 score: -0.2 bits; conditional E-value: 0.065 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsa 34 +p q + ++ ++gl rp+ L++ sa T323205_1 69 SQPPQ-TKLMTHNGLFRPIPYLTAVSA 94 67778.999**********99999877 PP == domain 3 score: 34.8 bits; conditional E-value: 7.7e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323205_1 96 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 141 689*******.************************************ PP == domain 4 score: 31.3 bits; conditional E-value: 1e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323205_1 147 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 183 9***********.***********************86 PP == domain 5 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323205_1 194 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 226 899*****.***********************98 PP == domain 6 score: 22.8 bits; conditional E-value: 4.2e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323205_1 238 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 270 9*******.***********************86 PP == domain 7 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323205_1 266 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 294 9***********5444.....4446888888887 PP == domain 8 score: 22.9 bits; conditional E-value: 4.1e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323205_1 308 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 355 9***********.************************************ PP == domain 9 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 + Lq a l + g+ rps+ L AsaGp l + T323205_1 369 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaS 399 57799..889999****************9944 PP == domain 10 score: 16.6 bits; conditional E-value: 3.8e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAs 33 gpA as+ Lq +++l++ g rps++Lp++s T323205_1 394 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASS 424 9**********.******************98 PP == domain 11 score: 10.2 bits; conditional E-value: 3.8e-05 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +as+l r s+ L+vA Gp+ ++srPs CL T323205_1 421 PASSLNRHSSSLTVAHLGPTHDCRAISRPSACL 453 68999****************999********9 PP == domain 12 score: 13.3 bits; conditional E-value: 4.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaG 35 l++sg+srp+ +L+vAs G T323205_1 481 PLPHSGPSRPRWCLTVASSG 500 69****************98 PP == domain 13 score: 31.6 bits; conditional E-value: 7.7e-12 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 g APa+++pL+ +++l+ +gl rps++++++++G + +LsrP+ +L T323205_1 500 GEAPAFQQPLR-AQLLPCNGLFRPSSCPTATFPGTAFAFCSLSRPRMSL 547 89*********.*********************************9887 PP == domain 14 score: -1.4 bits; conditional E-value: 0.15 DUF4705 9 rpLqa.........paslqasglsrp 25 r+Lq+ + +l+++ l + T323205_1 549 RRLQDelilpvrlqARLLPHNNLLWS 574 56666666633333666666666555 PP == domain 15 score: 0.3 bits; conditional E-value: 0.045 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 Pgp asr+p q sl a s+ s +L+++s T323205_1 595 PGPPSASRQPQQSNYSLTAATESQVSPCLTASS 627 89999*******888999999999999999988 PP == domain 16 score: 15.4 bits; conditional E-value: 8.9e-07 DUF4705 4 APasrrpLqa.................paslqasglsrpsaqLpvAsaGpklppagLs 44 A asr+p qa +++l +lsr s++L + saGp+ p++gLs T323205_1 631 AFASRWPPQAtnlpasqaaaasqwsl*AQLLLKDRLSRHSSCLLAGSAGPNSPKVGLS 688 88******************************************************97 PP == domain 17 score: 22.3 bits; conditional E-value: 6.1e-09 DUF4705 25 psaqLpvAsaGpklppagLsrPssCL 50 + ++Lp AsaG+++p++ L rPssCL T323205_1 722 AKLFLPKASAGQNRPEVTLCRPSSCL 747 7799*********************9 PP == domain 18 score: 5.0 bits; conditional E-value: 0.0016 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323205_1 777 LLQLASPDQALPPSGLYRPK 796 6889***************6 PP == domain 19 score: 2.0 bits; conditional E-value: 0.014 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323205_1 799 SSQPLQ-GQLLATGGFCRPKS 818 689***.***********986 PP == domain 20 score: -0.6 bits; conditional E-value: 0.091 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323205_1 820 SSQPLH-TQLLSVSGLCR 836 678999.99999888765 PP == domain 21 score: 9.6 bits; conditional E-value: 5.7e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323205_1 840 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 882 788999999999999999********************99988 PP == domain 22 score: 10.7 bits; conditional E-value: 2.7e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323205_1 890 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 921 8***********.*****9999999******98 PP == domain 23 score: 3.7 bits; conditional E-value: 0.004 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323205_1 928 SRGLNGPSPCLSAASTGPAStSQWAL 953 789999999******99976566555 PP == domain 24 score: 15.3 bits; conditional E-value: 9.7e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323205_1 943 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 1000 688888888888888888888888888888888**********************876 PP == domain 25 score: 2.0 bits; conditional E-value: 0.014 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323205_1 996 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 1053 89999999*************9899******************************997 PP == domain 26 score: -0.6 bits; conditional E-value: 0.09 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323205_1 1075 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 1107 679***77789********8..8889999999886 PP == domain 27 score: 0.4 bits; conditional E-value: 0.044 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323205_1 1104 RPPASRRPAQ-AQPQPHSGLSTPS 1126 669*******.************7 PP == domain 28 score: 15.4 bits; conditional E-value: 9.2e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323205_1 1137 PKLLPLGRFGRPSSRLPVASSGP 1159 8999******************9 PP == domain 29 score: 2.8 bits; conditional E-value: 0.0077 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323205_1 1162 SFLTTAFPGPVFP 1174 79*********97 PP == domain 30 score: 6.1 bits; conditional E-value: 0.00074 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323205_1 1169 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 1215 7888889**************766651678***************86 PP == domain 31 score: 16.3 bits; conditional E-value: 4.6e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323205_1 1244 PGPGQASRWPLQ-DQLLPSDGVSRPQ 1268 9***********.9***********7 PP == domain 32 score: -1.0 bits; conditional E-value: 0.12 DUF4705 1 PgpAPasrr.pLqa..........paslq 18 P+pA+as r pLqa pas+q T323205_1 1277 PRPAWAS-R*PLQAqvvlksaspgPASQQ 1304 7899987.556777555555555555555 PP == domain 33 score: 3.1 bits; conditional E-value: 0.0064 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323205_1 1384 ARPLQ-THLQPPGVLSGPSS 1402 69***.99999999999987 PP == domain 34 score: 11.6 bits; conditional E-value: 1.3e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323205_1 1443 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1489 555699*******************6666666666666666666666 PP == domain 35 score: -5.9 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323205_1 1493 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1538 7888.666666654222222277778886577888865558888888 PP == domain 36 score: -4.8 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323205_1 1543 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1595 67999998888644344444678999999999999999999999999999999 PP == domain 37 score: 0.0 bits; conditional E-value: 0.056 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323205_1 1609 SLTADSPRPASSRLTAASP 1627 5677778888888888875 PP == domain 38 score: 22.9 bits; conditional E-value: 3.9e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323205_1 1639 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1672 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1741 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 7662.62 // Query: T323205_2 [L=1740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-88 290.4 441.5 2.9e-17 62.5 8.0 43.5 36 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 2.2 1.1e-07 0.0017 29 48 .. 57 76 .. 50 76 .. 0.95 2 ! 11.9 3.8 1.1e-05 0.19 2 43 .. 84 125 .. 84 130 .. 0.90 3 ! 25.9 6.3 4.6e-10 7.5e-06 1 36 [. 136 170 .. 136 172 .. 0.94 4 ! 13.3 9.4 4.2e-06 0.068 3 50 .] 170 238 .. 168 238 .. 0.91 5 ! 3.8 7.9 0.0039 63 2 47 .. 212 247 .. 212 254 .. 0.68 6 ! 12.3 2.7 8e-06 0.13 3 26 .. 257 279 .. 256 286 .. 0.91 7 ! 15.0 4.9 1.2e-06 0.019 10 39 .. 306 334 .. 306 336 .. 0.96 8 ! 19.8 0.5 3.8e-08 0.00061 22 47 .. 350 375 .. 344 376 .. 0.91 9 ! 15.3 12.5 9.6e-07 0.016 8 38 .. 389 418 .. 382 434 .. 0.88 10 ! 9.1 6.0 8.6e-05 1.4 2 45 .. 489 531 .. 447 533 .. 0.90 11 ? 0.9 2.1 0.03 4.8e+02 18 39 .. 525 546 .. 522 556 .. 0.88 12 ! 6.7 3.8 0.00046 7.6 19 49 .. 557 589 .. 553 589 .. 0.87 13 ! 5.7 10.6 0.00095 16 5 49 .. 621 661 .. 593 661 .. 0.94 14 ? -1.8 14.2 0.21 3.4e+03 1 49 [. 667 725 .. 667 749 .. 0.70 15 ! 18.6 0.3 8.9e-08 0.0015 23 48 .. 782 807 .. 776 807 .. 0.89 16 ! 24.3 0.9 1.5e-09 2.4e-05 29 50 .] 809 830 .. 809 830 .. 0.99 17 ! 12.4 0.4 7.8e-06 0.13 31 47 .. 832 848 .. 832 850 .. 0.95 18 ! 4.9 1.5 0.0017 28 14 39 .. 847 872 .. 847 877 .. 0.89 19 ! 8.8 2.1 0.0001 1.6 4 30 .. 882 907 .. 880 910 .. 0.89 20 ! 6.9 0.5 0.00041 6.7 3 18 .. 913 927 .. 912 931 .. 0.87 21 ! 22.6 14.6 5e-09 8.2e-05 1 50 [] 932 980 .. 932 980 .. 0.91 22 ! 8.8 2.2 0.00011 1.7 21 38 .. 972 989 .. 964 997 .. 0.82 23 ! 25.0 8.0 9e-10 1.5e-05 2 50 .] 986 1043 .. 986 1043 .. 0.81 24 ! 27.6 7.3 1.4e-10 2.3e-06 20 50 .] 1034 1064 .. 1033 1064 .. 0.96 25 ! 16.2 9.3 5e-07 0.0082 16 49 .. 1051 1084 .. 1050 1086 .. 0.91 26 ! 3.3 11.9 0.0054 89 17 50 .] 1073 1118 .. 1071 1118 .. 0.81 27 ? 2.4 4.9 0.011 1.7e+02 14 38 .. 1103 1127 .. 1101 1141 .. 0.80 28 ? 0.9 33.3 0.031 5e+02 2 42 .. 1147 1273 .. 1146 1292 .. 0.91 29 ! 13.4 9.9 3.8e-06 0.062 17 50 .] 1381 1414 .. 1359 1414 .. 0.85 30 ! 27.8 3.3 1.2e-10 1.9e-06 17 50 .] 1414 1447 .. 1413 1447 .. 0.96 31 ! 62.5 8.0 1.8e-21 2.9e-17 1 50 [] 1452 1501 .. 1452 1501 .. 0.99 32 ! 12.4 0.9 7.7e-06 0.13 25 44 .. 1497 1516 .. 1496 1517 .. 0.91 33 ! 10.7 5.1 2.6e-05 0.42 24 49 .. 1528 1552 .. 1522 1553 .. 0.80 34 ! 4.2 2.0 0.0029 48 26 39 .. 1551 1566 .. 1550 1575 .. 0.73 35 ! 2.6 0.7 0.0086 1.4e+02 29 50 .] 1577 1599 .. 1577 1599 .. 0.86 36 ! 20.7 14.5 2e-08 0.00033 1 39 [. 1604 1664 .. 1604 1671 .. 0.95 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.1e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323205_2 57 LPAASPGPELSPVSLHRPSS 76 9*****************98 PP == domain 2 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323205_2 84 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 125 788********.***********************99765555 PP == domain 3 score: 25.9 bits; conditional E-value: 4.6e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323205_2 136 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 170 9***********.*******************9755 PP == domain 4 score: 13.3 bits; conditional E-value: 4.2e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323205_2 170 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 238 5569****************************************9988888888888888888899997 PP == domain 5 score: 3.8 bits; conditional E-value: 0.0039 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323205_2 212 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 247 899********.7777777777777777555433.........333 PP == domain 6 score: 12.3 bits; conditional E-value: 8e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323205_2 257 PALASRWPLQ-AQLLSQDVISRPK 279 9*********.******9999995 PP == domain 7 score: 15.0 bits; conditional E-value: 1.2e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323205_2 306 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 334 9**.************************98 PP == domain 8 score: 19.8 bits; conditional E-value: 3.8e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323205_2 350 FGPVPVQLTATNVGPKLPQVKLSRPA 375 78889********************5 PP == domain 9 score: 15.3 bits; conditional E-value: 9.6e-07 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323205_2 389 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 418 69***.**********************975 PP == domain 10 score: 9.1 bits; conditional E-value: 8.6e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsr 45 +p +s ++ q + +l+ s+l ps++L +As G+ p L++ T323205_2 489 DPDGVSLWHPQ-AKLLPFSSLYGPSSCLAMASLGQAHAPRRLFQ 531 55557888999.***********************998887776 PP == domain 11 score: 0.9 bits; conditional E-value: 0.03 DUF4705 18 qasglsrpsaqLpvAsaGpklp 39 ++++l ++ + + +A +Gp++p T323205_2 525 APRRLFQAQLLPFAACPGPECP 546 5889999**************7 PP == domain 12 score: 6.7 bits; conditional E-value: 0.00046 DUF4705 19 asglsrpsaqLpvAsaGpkl..ppagLsrPssC 49 +++ rp ++L+ +s Gp++ ++L rP+s+ T323205_2 557 SQCVYRPVSCLTTTSFGPTPaeLLGSLCRPQSS 589 78999***************65557999*9997 PP == domain 13 score: 5.7 bits; conditional E-value: 0.00095 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pas+ p + + l++ gl rp+ +Lp+ + lp gL+rPssC T323205_2 621 PASQHPPK-TEHLPHGGLPRPRICLPP---RQLLPHNGLFRPSSC 661 89999999.9***************97...5778999******** PP == domain 14 score: -1.8 bits; conditional E-value: 0.21 DUF4705 1 PgpAPasrrpLqa........paslqasglsrpsaqLpvAsaGpkl.........ppagLsrPssC 49 Pg A as++ Lqa p+s +as+ + L+ p+ +L+rPss+ T323205_2 667 PGTALASWQALQAqilqklasPNSAPASCRPTQAQTLT-------Tq*tlqahhlPEHSLLRPSSS 725 999*********76655555544444443222222222.......134444444499999999886 PP == domain 15 score: 18.6 bits; conditional E-value: 8.9e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323205_2 782 LQTKLSLPVASTGQNCPQVSLSRANS 807 678899*****************976 PP == domain 16 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323205_2 809 LPVASAGQNRPQVSLFTPSSCL 830 8********************9 PP == domain 17 score: 12.4 bits; conditional E-value: 7.8e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323205_2 832 VASAGAKLPQVGLSRPS 848 8***************6 PP == domain 18 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323205_2 847 PSLLLPEGMYRPSLCLTADSPCPALP 872 678999************99999997 PP == domain 19 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323205_2 882 APAFRQLVR-AQLLPHGGLFSPNSCLL 907 9*****555.***************95 PP == domain 20 score: 6.9 bits; conditional E-value: 0.00041 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323205_2 913 SAPASHWPLE-AQLMP 927 6********9.99887 PP == domain 21 score: 22.6 bits; conditional E-value: 5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323205_2 932 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 980 8***********.***************99876666667899*******9 PP == domain 22 score: 8.8 bits; conditional E-value: 0.00011 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323205_2 972 SLCGPSSCLPVASVGQAR 989 5667***********986 PP == domain 23 score: 25.0 bits; conditional E-value: 9e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323205_2 986 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 1043 678888888888888888852.44311567899*************************9 PP == domain 24 score: 27.6 bits; conditional E-value: 1.4e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323205_2 1034 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 1064 79***************************87 PP == domain 25 score: 16.2 bits; conditional E-value: 5e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323205_2 1051 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 1084 56899**************************975 PP == domain 26 score: 3.3 bits; conditional E-value: 0.0054 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323205_2 1073 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 1118 57899***9637*********9989888888888888888888765 PP == domain 27 score: 2.4 bits; conditional E-value: 0.011 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323205_2 1103 PGLLPPEGLHRPSLSLTADSPRPAS 1127 678999********99998877765 PP == domain 28 score: 0.9 bits; conditional E-value: 0.031 DUF4705 2 gpAPasrrpLqa...................................................................................... 13 gpAPa+++pLqa T323205_2 1147 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapq 1244 9***********************************************************************************************87 PP DUF4705 14 paslqasglsrpsaqLpvAsaGpklppag 42 ++ ++ glsr s+++p+As+Gpk +p++ T323205_2 1245 AQVRPHGGLSRISSCPPMASPGPKWSPVS 1273 7888*********************5543 PP == domain 29 score: 13.4 bits; conditional E-value: 3.8e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323205_2 1381 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1414 45568**************************987 PP == domain 30 score: 27.8 bits; conditional E-value: 1.2e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323205_2 1414 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1447 8999****************************87 PP == domain 31 score: 62.5 bits; conditional E-value: 1.8e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323205_2 1452 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1501 9***********************************************98 PP == domain 32 score: 12.4 bits; conditional E-value: 7.7e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323205_2 1497 SSSSLPAASAGLSCPQVGLE 1516 6899**************96 PP == domain 33 score: 10.7 bits; conditional E-value: 2.6e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323205_2 1528 GPSSV-LLASPGAKLPRVSLSRPSSS 1552 45555.579***************97 PP == domain 34 score: 4.2 bits; conditional E-value: 0.0029 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323205_2 1551 SSCLPVASFGPAQlmA 1566 89*********86443 PP == domain 35 score: 2.6 bits; conditional E-value: 0.0086 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323205_2 1577 LLVASSGPELdLQSAFAGPASCL 1599 789*******8677888999998 PP == domain 36 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323205_2 1604 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1664 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.62 # Mc/sec: 8028.78 // Query: T323205_3 [L=1740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-69 229.4 466.0 1.1e-15 57.5 9.2 42.6 35 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 1.0 0.00019 3 4 24 .. 54 74 .. 53 90 .. 0.90 2 ? -1.3 16.5 0.15 2.5e+03 7 36 .. 131 159 .. 104 160 .. 0.73 3 ! 23.2 4.0 3.3e-09 5.4e-05 1 31 [. 157 186 .. 157 199 .. 0.88 4 ! 16.5 2.8 4.2e-07 0.0068 1 35 [. 200 233 .. 200 242 .. 0.90 5 ! 44.3 11.0 8.5e-16 1.4e-11 1 50 [] 244 292 .. 244 292 .. 0.99 6 ! 23.4 0.8 2.9e-09 4.8e-05 28 50 .] 291 313 .. 290 313 .. 0.97 7 ? -1.9 13.1 0.23 3.8e+03 20 41 .. 389 415 .. 314 418 .. 0.89 8 ? 1.0 3.4 0.028 4.6e+02 5 26 .. 419 439 .. 419 440 .. 0.94 9 ! 17.1 1.8 2.7e-07 0.0043 2 36 .. 478 511 .. 478 511 .. 0.98 10 ? -4.5 18.7 1 1.6e+04 1 39 [. 509 571 .. 509 600 .. 0.61 11 ? 2.3 7.7 0.011 1.7e+02 1 50 [] 561 621 .. 561 621 .. 0.78 12 ! 4.0 0.2 0.0032 52 16 37 .. 620 641 .. 619 651 .. 0.82 13 ! 9.7 2.0 5.3e-05 0.86 2 26 .. 657 680 .. 657 682 .. 0.95 14 ! 2.6 8.1 0.0087 1.4e+02 9 33 .. 685 719 .. 683 735 .. 0.67 15 ! 13.3 6.4 4.2e-06 0.068 10 48 .. 739 786 .. 737 787 .. 0.97 16 ! 3.5 7.4 0.0048 78 3 29 .. 826 852 .. 787 855 .. 0.92 17 ! 14.8 1.4 1.3e-06 0.022 1 30 [. 856 884 .. 856 887 .. 0.96 18 ? 0.9 4.7 0.03 4.9e+02 18 50 .] 891 927 .. 888 927 .. 0.80 19 ! 9.9 3.3 4.7e-05 0.76 8 43 .. 928 962 .. 927 967 .. 0.89 20 ! 20.7 15.6 2e-08 0.00033 2 49 .. 975 1021 .. 974 1021 .. 0.94 21 ? -1.7 0.0 0.2 3.3e+03 7 15 .. 1022 1029 .. 1022 1034 .. 0.81 22 ! 10.4 0.6 3.4e-05 0.55 1 15 [. 1037 1050 .. 1037 1057 .. 0.82 23 ! 21.2 14.2 1.4e-08 0.00023 1 39 [. 1058 1108 .. 1058 1111 .. 0.93 24 ! 24.9 24.8 9.9e-10 1.6e-05 1 50 [] 1112 1195 .. 1112 1195 .. 0.95 25 ! 9.4 6.7 6.5e-05 1.1 29 50 .] 1195 1216 .. 1194 1216 .. 0.97 26 ! 21.4 2.9 1.2e-08 0.00019 17 50 .] 1216 1249 .. 1216 1249 .. 0.96 27 ! 57.5 9.2 6.5e-20 1.1e-15 1 50 [] 1254 1301 .. 1254 1301 .. 0.99 28 ? -2.2 0.1 0.28 4.6e+03 32 46 .. 1307 1325 .. 1305 1326 .. 0.78 29 ? -0.1 9.9 0.064 1e+03 19 39 .. 1393 1414 .. 1380 1426 .. 0.69 30 ! 7.9 3.9 0.00019 3.1 1 25 [. 1441 1464 .. 1441 1467 .. 0.94 31 ! 12.9 0.4 5.2e-06 0.085 2 15 .. 1475 1487 .. 1475 1494 .. 0.82 32 ! 12.7 19.6 6.4e-06 0.11 1 37 [. 1495 1574 .. 1495 1576 .. 0.99 33 ! 2.8 14.6 0.0077 1.2e+02 1 46 [. 1571 1616 .. 1571 1617 .. 0.57 34 ! 14.4 4.1 1.8e-06 0.03 16 38 .. 1630 1652 .. 1628 1661 .. 0.86 35 ! 2.6 0.3 0.0089 1.5e+02 2 22 .. 1649 1668 .. 1648 1671 .. 0.86 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00019 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323205_3 54 APTSRQPLQAQNFLQSASTDQ 74 9********999999987655 PP == domain 2 score: -1.3 bits; conditional E-value: 0.15 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323205_3 131 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 159 345555.**********************9 PP == domain 3 score: 23.2 bits; conditional E-value: 3.3e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323205_3 157 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 186 9***********.*****************9 PP == domain 4 score: 16.5 bits; conditional E-value: 4.2e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323205_3 200 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 233 57*******9996..7*******************9 PP == domain 5 score: 44.3 bits; conditional E-value: 8.5e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323205_3 244 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 292 8***********.************************************9 PP == domain 6 score: 23.4 bits; conditional E-value: 2.9e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323205_3 291 CLLVAYEGPKSPQVDLSRPSSCL 313 9*********************9 PP == domain 7 score: -1.9 bits; conditional E-value: 0.23 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323205_3 389 NSLCRPCSCLPGASPGPALaswrlPQA 415 5799*************9965555555 PP == domain 8 score: 1.0 bits; conditional E-value: 0.028 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323205_3 419 PACQQPQQ-AQLFPHSGPFRPN 439 9*******.*********9996 PP == domain 9 score: 17.1 bits; conditional E-value: 2.7e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 +pA as++ Lq ++ ++ g r s++L +As Gp T323205_3 478 RPASASQWTLQ-TQMVSHCGILRRSSCLSAASTGP 511 59*********.**********************9 PP == domain 10 score: -4.5 bits; conditional E-value: 1 DUF4705 1 PgpAPasrrpL.qa..........................paslqasglsrpsaqLpvAsaGpkl.....p 39 +gpAPa+++pL + s ++a +p As Gp++ p T323205_3 509 TGPAPALQWPL*AKlmphgdfsrhsfcllqpvqaqnvlnsA--------SPGRAHPPSASTGPSPasqqpP 571 8*********9954466778888888888766653333330........3344455555555555444433 PP == domain 11 score: 2.3 bits; conditional E-value: 0.011 DUF4705 1 PgpAPasrrp.Lqa..........paslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp Pas++p L + + lsrp ++Lp+Asa +p g ++Ps +L T323205_3 561 TGPSPASQQPpLVQlllsclaasvGHRVLKVKLSRPTFGLPAASAIKLFPHCGHRKPSFSL 621 799999999646557888895555444455679***********99999999999999887 PP == domain 12 score: 4.0 bits; conditional E-value: 0.0032 DUF4705 16 slqasglsrpsaqLpvAsaGpk 37 sl++s l + s +L+vAs+G + T323205_3 620 SLPHSILRKLSICLTVASPGHE 641 67888888889*********87 PP == domain 13 score: 9.7 bits; conditional E-value: 5.3e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrps 26 gpA a r+ Lq +++l++ +l rp T323205_3 657 GPALAKRQTLQ-AQLLPPGRLCRPK 680 9**********.**********997 PP == domain 14 score: 2.6 bits; conditional E-value: 0.0087 DUF4705 9 rpLqa..........paslqasglsrpsaqLpvAs 33 +pL + p +l++s++srp +L +As T323205_3 685 WPLLTqllphvglhrPRLLPHSRPSRPTTCLSIAS 719 55554444444444499999999999999998885 PP == domain 15 score: 13.3 bits; conditional E-value: 4.2e-06 DUF4705 10 pLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPss 48 pLqa + ++++s lsr s ++s+ p+l p+gLsrPss T323205_3 739 PLQAqllppsav*AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 786 9*********************************************98 PP == domain 16 score: 3.5 bits; conditional E-value: 0.0048 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323205_3 826 PALVCKWPLQEQNCLKSASPGPASCFP 852 999999***999999999999988776 PP == domain 17 score: 14.8 bits; conditional E-value: 1.3e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323205_3 856 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 884 8***********.****************9 PP == domain 18 score: 0.9 bits; conditional E-value: 0.03 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323205_3 891 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 927 56777788888888886656779999**********8 PP == domain 19 score: 9.9 bits; conditional E-value: 4.7e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323205_3 928 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 962 57777.999**********************98877 PP == domain 20 score: 20.7 bits; conditional E-value: 2e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323205_3 975 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 1021 9********995..4689999**************************97 PP == domain 21 score: -1.7 bits; conditional E-value: 0.2 DUF4705 7 srrpLqapa 15 srrpLq ++ T323205_3 1022 SRRPLQ-AQ 1029 79****.66 PP == domain 22 score: 10.4 bits; conditional E-value: 3.4e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323205_3 1037 PGPAPASRCPLQA-Q 1050 9***********4.4 PP == domain 23 score: 21.2 bits; conditional E-value: 1.4e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323205_3 1058 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 1108 9*******************************9.89**********876666 PP == domain 24 score: 24.9 bits; conditional E-value: 9.9e-10 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323205_3 1112 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 1195 8*********************************************6515699*****************************98 PP == domain 25 score: 9.4 bits; conditional E-value: 6.5e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323205_3 1195 LPASSPGPALPPGCVSRPDCCL 1216 9********************9 PP == domain 26 score: 21.4 bits; conditional E-value: 1.2e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323205_3 1216 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 1249 6889****************************87 PP == domain 27 score: 57.5 bits; conditional E-value: 6.5e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323205_3 1254 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1301 9*********************************************..97 PP == domain 28 score: -2.2 bits; conditional E-value: 0.28 DUF4705 32 AsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323205_3 1307 ATVGPADalllPELGLYRP 1325 777777556679****999 PP == domain 29 score: -0.1 bits; conditional E-value: 0.064 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323205_3 1393 SRRPLRAQLFLPAASLGPTPaS 1414 6777888888888888887752 PP == domain 30 score: 7.9 bits; conditional E-value: 0.00019 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323205_3 1441 PGPGQASRWPRQ-AQLLPSDGISRS 1464 9***********.********9985 PP == domain 31 score: 12.9 bits; conditional E-value: 5.2e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323205_3 1475 GPAWASRRPLQA-Q 1487 9**********4.4 PP == domain 32 score: 12.7 bits; conditional E-value: 6.4e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323205_3 1495 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1574 9***************************************************************.***************7 PP == domain 33 score: 2.8 bits; conditional E-value: 0.0077 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323205_3 1571 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 1616 9***********44444444444444444444444444444.....................44444 PP == domain 34 score: 14.4 bits; conditional E-value: 1.8e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323205_3 1630 LLPFGRFGRPSSCLPVASLGPAH 1652 578889***************87 PP == domain 35 score: 2.6 bits; conditional E-value: 0.0089 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323205_3 1649 GPAHSSQRPFQ-APFFPSGSL 1668 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1740 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.63 # Mc/sec: 7901.34 // Query: T051426_1 [L=1797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7450.60 // Query: T051426_2 [L=1797] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1797 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48 # Mc/sec: 10710.23 // Query: T051426_3 [L=1796] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1796 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 7446.45 // Query: T337290_1 [L=1808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 7957.51 // Query: T337290_2 [L=1808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.64 # Mc/sec: 8081.84 // Query: T337290_3 [L=1808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.63 # Mc/sec: 8210.13 // Query: T139338_1 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.65 # Mc/sec: 6474.28 // Query: T139338_2 [L=1470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.63 # Mc/sec: 6675.27 // Query: T139338_3 [L=1470] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.13 12.5 0.0 0.27 11.5 0.0 1.4 1 Ntox1 Putative RNase-like toxin, toxin_1 Domain annotation for each model (and alignments): >> Ntox1 Putative RNase-like toxin, toxin_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 1.7e-05 0.27 26 58 .. 1307 1339 .. 1299 1347 .. 0.89 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.7e-05 Ntox1 26 ekCsppPCPvlrveYkkelaaddelkeeneeve 58 +C +P P ++ +Y+k+ + +++k++ + + T139338_3 1307 ILCTHSPGPAIQRMYRKQKQVSEQVKAWTHTSQ 1339 58**************************99876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1470 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.59 # Mc/sec: 7127.83 // Query: T085624_1 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-12 46.0 0.0 3.2e-12 45.4 0.0 1.2 1 Dynein_heavy Dynein heavy chain and region D6 of dynein moto Domain annotation for each model (and alignments): >> Dynein_heavy Dynein heavy chain and region D6 of dynein motor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.4 0.0 1.9e-16 3.2e-12 305 348 .. 499 544 .. 483 580 .. 0.80 Alignments for each domain: == domain 1 score: 45.4 bits; conditional E-value: 1.9e-16 .S-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGG.... CS Dynein_heavy 305 kipwdalryligeinYGGrvtDdwDrrllntlleeffspevle..e 348 ++pw+++ryl+ ei+YGG++tDd D +l++++leef++p++l + T085624_1 499 QVPWEDVRYLFDEIMYGGHITDDGDCKLCRVYLEEFMNPSLLAalS 544 69***************************************96332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.66 # Mc/sec: 2847.83 // Query: T085624_2 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.57 # Mc/sec: 3240.63 // Query: T085624_3 [L=656] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (656 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 597 (0.0366123); expected 326.1 (0.02) Passed bias filter: 301 (0.0184595); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.57 # Mc/sec: 3235.70 // Query: T053002_1 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 12207.51 // Query: T053002_2 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.63 # Mc/sec: 14145.22 // Query: T053002_3 [L=3115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.26s 00:00:01.26 Elapsed: 00:00:00.50 # Mc/sec: 17822.97 // Query: T142856_1 [L=515] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (515 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 439 (0.0269226); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.45 # Mc/sec: 3274.06 // Query: T142856_2 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45 # Mc/sec: 3267.70 // Query: T142856_3 [L=514] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (514 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 431 (0.026432); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45 # Mc/sec: 3267.70 // Query: T165128_1 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.1 7.3 31.4 16 5.6 0.9 6.8 5 TfoX_N TfoX N-terminal domain Domain annotation for each model (and alignments): >> TfoX_N TfoX N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.1 0.013 2.1e+02 35 71 .. 120 153 .. 119 159 .. 0.73 2 ? 5.6 0.9 0.001 16 36 73 .. 150 187 .. 143 209 .. 0.81 3 ? 4.9 1.0 0.0017 28 36 71 .. 215 250 .. 192 264 .. 0.60 4 ? -1.2 8.6 0.14 2.3e+03 36 73 .. 278 315 .. 261 392 .. 0.74 5 ? 4.1 0.7 0.0031 51 35 79 .. 390 435 .. 381 438 .. 0.67 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.013 EEEE--HHHHHHHHHTT----EEEETTEEEE-SEEE- CS TfoX_N 35 lylradeelreefeaaglepftyakkgtpktlsYyrv 71 +y +a++++++++++a +++t a p++++Y ++ T165128_1 120 VYTKAHPHQTPQYTKAHPRQYTKA---HPHQTQYTKA 153 5899**********8888855544...3466677665 PP == domain 2 score: 5.6 bits; conditional E-value: 0.001 EEE--HHHHHHHHHTT----EEEETTEEEE-SEEE--H CS TfoX_N 36 ylradeelreefeaaglepftyakkgtpktlsYyrvpe 73 y +a++++++++++a ++ +y+k ++t +Y ++++ T165128_1 150 YTKAHPHQTPQYTKAHPHQTQYTKAHPHQTPQYTKAHP 187 88999999999999999999999887777778877655 PP == domain 3 score: 4.9 bits; conditional E-value: 0.0017 EEE--HHHHHHHHHTT----EEEETTEEEE-SEEE- CS TfoX_N 36 ylradeelreefeaaglepftyakkgtpktlsYyrv 71 y +a+++++++ +a++++ +y+k ++t +Y +v T165128_1 215 YTKAHPHQTQYTKAHPHQTPQYTKAHPHQTPQYTKV 250 445555555555555555555554444444455555 PP == domain 4 score: -1.2 bits; conditional E-value: 0.14 EEE--HHHHHHHHHTT----EEEETTEEEE-SEEE--H CS TfoX_N 36 ylradeelreefeaaglepftyakkgtpktlsYyrvpe 73 y +a++++++++++a ++ +y+k ++t +Y ++++ T165128_1 278 YTKAHPHQTPQYTKAHPHQTQYTKAHPHQTPQYTKAHP 315 56666666666666666666666655555555555443 PP == domain 5 score: 4.1 bits; conditional E-value: 0.0031 EEEE--HHHHHHHHHTT--.--EEEETTEEEE-SEEE--HHHHC-H CS TfoX_N 35 lylradeelreefeaagle.pftyakkgtpktlsYyrvpeellede 79 y +a++++++++++a ++ +y+k ++t +Y +++++ ++ T165128_1 390 QYTKAHPHQTPQYTKAHSHqTPQYTKAHPHQTPQYTKAHPHQTAQN 435 4778888888888888777566677666666668877777666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1054 (0.0646388); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.55 # Mc/sec: 2907.64 // Query: T165128_2 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 8.9 31.3 7.9 6.3 0.6 7.7 10 PELOTA_1 PELOTA RNA binding domain Domain annotation for each model (and alignments): >> PELOTA_1 PELOTA RNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.3 0.026 4.2e+02 37 63 .. 140 165 .. 121 173 .. 0.59 2 ? 1.1 0.6 0.02 3.3e+02 37 46 .. 171 180 .. 139 193 .. 0.50 3 ? 3.9 0.4 0.0027 44 37 66 .. 171 200 .. 160 207 .. 0.78 4 ? 4.2 0.4 0.0022 36 37 66 .. 193 222 .. 185 229 .. 0.82 5 ? 2.6 0.5 0.0072 1.2e+02 40 66 .. 218 243 .. 198 250 .. 0.50 6 ? 4.6 0.2 0.0017 27 37 61 .. 236 260 .. 225 271 .. 0.65 7 ? 0.8 0.1 0.025 4e+02 37 63 .. 278 293 .. 262 298 .. 0.52 8 ? 6.3 0.6 0.00049 8 37 69 .. 299 331 .. 291 340 .. 0.82 9 ? 1.4 0.1 0.017 2.7e+02 37 66 .. 352 380 .. 344 386 .. 0.68 10 ? 6.3 0.6 0.00049 7.9 39 69 .. 393 423 .. 382 436 .. 0.55 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.026 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgv 63 +P+++l+r + +p++ +++lL k++ T165128_2 140 TPKHILIRLN-TPKHILIRLLNTPKHI 165 4555555533.4555556666555555 PP == domain 2 score: 1.1 bits; conditional E-value: 0.02 PELOTA_1 37 vPekvlvrde 46 +P+++l+r T165128_2 171 TPKHILIRLL 180 2333333333 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0027 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r ++p++ +++lL k++ ++ T165128_2 171 TPKHILIRLLNTPKHILIRLLNTPKHILIR 200 688999999999999999999888888765 PP == domain 4 score: 4.2 bits; conditional E-value: 0.0022 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r ++p++ ++++L k++ ++ T165128_2 193 TPKHILIRLLNTPKHILIRHLNTPKHILIR 222 699999999999999999999999888765 PP == domain 5 score: 2.6 bits; conditional E-value: 0.0072 PELOTA_1 40 kvlvrdeeepdlahlllLakekgvpve 66 ++l+r + +p++ +++lL k++ ++ T165128_2 218 HILIRLN-TPKHILIRLLNTPKHILIR 243 3443322.3333344444444444333 PP == domain 6 score: 4.6 bits; conditional E-value: 0.0017 PELOTA_1 37 vPekvlvrdeeepdlahlllLakek 61 +P+++l+r+ ++p+ ++++L + T165128_2 236 TPKHILIRHLNTPKYILIRHLNTPQ 260 5677777777777777777766555 PP == domain 7 score: 0.8 bits; conditional E-value: 0.025 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgv 63 +P+++l+r+ ++p+ ++ T165128_2 278 TPKHILIRHLNTPK-----------HI 293 35555555555554...........44 PP == domain 8 score: 6.3 bits; conditional E-value: 0.00049 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevp 69 +P+++l+r ++p+++++++L k++ +++ + T165128_2 299 TPKHILIRLLNTPKHTLIRHLNTPKHILIRHLN 331 699999999999999999999999999887654 PP == domain 9 score: 1.4 bits; conditional E-value: 0.017 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r + +p++ ++++L k++ ++ T165128_2 352 TPKHILIRLN-TPKHILIRHLNTPKHILIN 380 5777777654.6677777777777777665 PP == domain 10 score: 6.3 bits; conditional E-value: 0.00049 PELOTA_1 39 ekvlvrdeeepdlahlllLakekgvpveevp 69 +++l+r+ ++p++ +++lL k++ +++ + T165128_2 393 KHILIRHLNTPKHILIRLLNTPKHTLIRHLN 423 5555555555555555555555544444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.60 # Mc/sec: 2665.34 // Query: T165128_3 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1614 (0.098982); expected 326.1 (0.02) Passed bias filter: 321 (0.019686); expected 326.1 (0.02) Passed Vit filter: 232 (0.0142279); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.43s 00:00:02.25 Elapsed: 00:00:00.67 # Mc/sec: 2386.87 // Query: T052150_1 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 6254.56 // Query: T052150_2 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 6379.65 // Query: T052150_3 [L=1115] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1115 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6254.56 // Query: T259127_1 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 8176.25 // Query: T259127_2 [L=1429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8015.93 // Query: T259127_3 [L=1428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7856.28 // Query: T364948_1 [L=1139] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.083 12.6 2.2 0.15 11.7 2.2 1.4 1 BrkDBD Brinker DNA-binding domain Domain annotation for each model (and alignments): >> BrkDBD Brinker DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 2.2 9.5e-06 0.15 19 45 .. 370 396 .. 367 399 .. 0.93 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 9.5e-06 HH-TTTTT-HHHHHHHTTS-HHHHHHH CS BrkDBD 19 esdndCkGdyRAvAkkynisrknvekW 45 + dn+C + + +++ ++r++v+kW T364948_1 370 RADNQCSRTHICTTTRFRVLRRYVQKW 396 689****9999**************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1139 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 6649.97 // Query: T364948_2 [L=1138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 6383.58 // Query: T364948_3 [L=1138] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1138 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 6383.58 // Query: T124773_1 [L=1762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.48 # Mc/sec: 10501.63 // Query: T124773_2 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 10495.67 // Query: T124773_3 [L=1761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.50 # Mc/sec: 10075.84 // Query: T226505_1 [L=11232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.37s 00:00:02.42 Elapsed: 00:00:00.65 # Mc/sec: 49435.14 // Query: T226505_2 [L=11232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.037 13.4 0.0 0.06 12.7 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 3.7e-06 0.06 168 221 .. 984 1032 .. 971 1033 .. 0.98 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.7e-06 TEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 168 DDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 DDi+++ +s++e+ + l+ ++++l + +in++K++ s++vk+LGv+ T226505_2 984 DDIMLIGSSEQEVANTLDLLVRHLCARRWEINMTKIQGP-----STSVKFLGVQ 1032 ***************************************.....9*******96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.98u 0.35s 00:00:02.33 Elapsed: 00:00:00.61 # Mc/sec: 52676.79 // Query: T226505_3 [L=11232] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-12 47.1 0.0 2.6e-12 46.6 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.6 0.0 1.6e-16 2.6e-12 121 210 .. 3886 3975 .. 3881 3976 .. 0.95 Alignments for each domain: == domain 1 score: 46.6 bits; conditional E-value: 1.6e-16 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +p n kvkev++gk+e+pa f l+ea r+yt p++pe +a + + f+ qs++dir+ lq+ + +k ++ a kvyn r+ T226505_3 3886 VKPVNYDKVKEVTRGKDENPALFQGLLVEALRKYTNAGPDTPEGQALLGIHFLIQSSPDIRRNLQKAAMGPSSPMKRRLNIAFKVYNNRD 3975 68****************************************************************999999999999999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (11232 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.11u 0.40s 00:00:02.50 Elapsed: 00:00:00.67 # Mc/sec: 47959.47 // Query: T320968_1 [L=1091] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1091 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 6640.78 // Query: T320968_2 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 6496.47 // Query: T320968_3 [L=1090] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1090 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.47 # Mc/sec: 6634.69 // Query: T312150_1 [L=303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1844.32 // Query: T312150_2 [L=303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47 # Mc/sec: 1844.32 // Query: T312150_3 [L=302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.46 # Mc/sec: 1878.20 // Query: T316023_1 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 11824.76 // Query: T316023_2 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.48 # Mc/sec: 12563.81 // Query: T316023_3 [L=2107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-07 30.9 1.5 1.3e-07 30.9 1.5 1.9 2 DUF1725 Protein of unknown function (DUF1725) 0.00029 18.9 25.0 0.00043 18.3 25.0 1.1 1 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 1.5 1.6e-11 1.3e-07 3 19 .] 563 579 .. 563 579 .. 0.97 2 ? -6.5 4.5 2 1.6e+04 6 12 .. 1545 1551 .. 1545 1552 .. 0.86 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 1.6e-11 DUF1725 3 agKWMELEnIILSEisQ 19 a++WMELE IILSEi+Q T316023_3 563 AATWMELEAIILSEITQ 579 79**************9 PP == domain 2 score: -6.5 bits; conditional E-value: 2 DUF1725 6 WMELEnI 12 W ELE I T316023_3 1545 WLELEWI 1551 9****88 PP >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 25.0 5.3e-08 0.00043 507 615 .. 1737 1846 .. 1732 1869 .. 0.78 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 5.3e-08 Herpes_BLLF1 507 tsptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatsptvgetspq 601 +pts ptp++ ptp ptp++ pt pt pt ++ pt ptp++ +pt pt ptp++ ptv e p T316023_3 1737 ITPTSQTRVPTPQSMVPTPYSMVPTPQSVVPTPQSMVPTPYSMVPTLQSMVPTLQSMVPTPQSMVPTPYSMVPTLQSVVPTPQSMVPTVQEMMPT 1831 57999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998886 PP Herpes_BLLF1 602 an.ttnhtlggtsst 615 ++ + g+ st T316023_3 1832 PVyAARSKIHGAHST 1846 431334445555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.50 # Mc/sec: 12055.54 // Query: T154026_1 [L=1725] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1725 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.21s 00:00:00.89 Elapsed: 00:00:00.46 # Mc/sec: 10728.11 // Query: T154026_2 [L=1724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 10065.45 // Query: T154026_3 [L=1724] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1724 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 9670.73 // Query: T332101_1 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 11.4 0.2 0.33 10.7 0.2 1.2 1 RuvB_C Holliday junction DNA helicase ruvB C-terminus Domain annotation for each model (and alignments): >> RuvB_C Holliday junction DNA helicase ruvB C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.2 2e-05 0.33 48 70 .. 41 63 .. 38 65 .. 0.90 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 2e-05 HHHHHTTSEEEETTEEEE-HHHH CS RuvB_C 48 PyLlqegfiertprGRvvtekay 70 P Ll++g +rtprGR++ ++++ T332101_1 41 PGLLRKGVPARTPRGRCAARRGC 63 789***************99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3078.25 // Query: T332101_2 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 3078.25 // Query: T332101_3 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 3200.55 // Query: T334193_1 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 501 (0.0307249); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.48 # Mc/sec: 4845.53 // Query: T334193_2 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 469 (0.0287624); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 4746.64 // Query: T334193_3 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 4651.71 // Query: T212051_1 [L=8242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.37s 00:00:02.10 Elapsed: 00:00:00.65 # Mc/sec: 36275.32 // Query: T212051_2 [L=8242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 526 (0.0322581); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.83u 0.38s 00:00:02.21 Elapsed: 00:00:00.63 # Mc/sec: 37426.92 // Query: T212051_3 [L=8242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.79u 0.33s 00:00:02.12 Elapsed: 00:00:00.62 # Mc/sec: 38030.58 // Query: T210759_1 [L=814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1261 (0.0773335); expected 326.1 (0.02) Passed bias filter: 195 (0.0119588); expected 326.1 (0.02) Passed Vit filter: 51 (0.00312768); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.57 # Mc/sec: 4015.03 // Query: T210759_2 [L=814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (814 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1233 (0.0756163); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.41s 00:00:01.61 Elapsed: 00:00:00.76 # Mc/sec: 3064.10 // Query: T210759_3 [L=813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 974 (0.0597326); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.66 # Mc/sec: 3524.02 // Query: T052136_1 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1160 (0.0711395); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 1839.91 // Query: T052136_2 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 632 (0.0387587); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 1804.52 // Query: T052136_3 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.57 # Mc/sec: 1617.85 // Query: T235945_1 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 4609.11 // Query: T235945_2 [L=870] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (870 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 138 (0.00846314); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.56 # Mc/sec: 4366.53 // Query: T235945_3 [L=869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.68 # Mc/sec: 3655.97 // Query: T009708_1 [L=4407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.37s 00:00:01.91 Elapsed: 00:00:00.79 # Mc/sec: 15959.09 // Query: T009708_2 [L=4406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 336 (0.0206059); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.36s 00:00:01.98 Elapsed: 00:00:00.92 # Mc/sec: 13700.89 // Query: T009708_3 [L=4406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.35s 00:00:01.85 Elapsed: 00:00:00.73 # Mc/sec: 17266.87 // Query: T211877_1 [L=1775] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1775 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.68 # Mc/sec: 7467.61 // Query: T211877_2 [L=1774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.64 # Mc/sec: 7929.86 // Query: T211877_3 [L=1774] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1774 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.68 # Mc/sec: 7463.40 // Query: T310721_1 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:00.81 # Mc/sec: 12693.61 // Query: T310721_2 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.63 # Mc/sec: 16320.35 // Query: T310721_3 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-47 159.5 1.6 1.1e-46 159.0 1.6 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.0 1.6 7e-51 1.1e-46 5 222 .] 3175 3427 .. 3171 3427 .. 0.91 Alignments for each domain: == domain 1 score: 159.0 bits; conditional E-value: 7e-51 T......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS RVT_1 5 g.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellr 90 g ++++Rpisl+++d k+lnk++a + ++++k ++++q+gf pg +++ ++ + ++++ + ++k+ +++++D +kaFd+++ + l+ T310721_3 3175 GrdttkKENFRPISLMNTDAKILNKILAn*iQ---QHIKKRIHHDQVGFIPGMQVWFNIhksiNIIHHIKRTNGKNYMIISIDAEKAFDKIQQPIMLK 3269 555555689*****************964434...788999********************9777788877788889********************* PP GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HH CS RVT_1 91 kltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.ke 178 +l+++ ++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ ++ T310721_3 3270 TLNELDIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGWPLSPLLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLENpIV 3367 *******************************99*********************************99***************************667 PP HHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 179 elqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ k sg+kin +K++++l+ s+ s+++kyLG++l T310721_3 3368 SAQNLLKLISNFSKVSGYKINVQKSQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 3427 7***************************99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.44u 0.38s 00:00:01.81 Elapsed: 00:00:00.81 # Mc/sec: 12693.61 // Query: T125255_1 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.53 # Mc/sec: 1608.54 // Query: T125255_2 [L=298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.59 # Mc/sec: 1444.96 // Query: T125255_3 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.66 # Mc/sec: 1287.37 // Query: T309066_1 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0021 17.7 0.0 0.0054 16.4 0.0 1.7 1 HTH_5 Bacterial regulatory protein, arsR family 0.0031 17.2 0.0 0.0058 16.3 0.0 1.3 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.068 13.3 0.0 0.3 11.2 0.0 1.9 2 Fe_dep_repress Iron dependent repressor, N-terminal DNA bind 0.14 11.9 0.0 0.35 10.7 0.0 1.6 1 MarR_2 MarR family Domain annotation for each model (and alignments): >> HTH_5 Bacterial regulatory protein, arsR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 1.3e-06 0.0054 13 39 .. 309 337 .. 304 340 .. 0.82 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.3e-06 T.SS.EEHHHHHHHHTS-HHHHHHHHHHH CS HTH_5 13 e.ge.lcvcelaeelglsqstvShHLkkL 39 e + ++ +e aeel+++ stv +HLk+ T309066_1 309 EgDPlTTTGEVAEELNVNHSTVVQHLKCI 337 54556899*******************97 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 1.4e-06 0.0058 81 144 .. 470 530 .. 451 532 .. 0.79 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.4e-06 DDE_3 81 ivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfkslde 144 ++ Dn + H +l++l +e + ++l PpySP+l p + k +++l+ + f+++++ T309066_1 470 GPILHDNIQLHAQPTLQKL-NE--LGYKVLCHPPYSPDLSPTDYHFFKHLNNFLQGKCFHNQQD 530 45788***********999.55..7****************99766555555555588887765 PP >> Fe_dep_repress Iron dependent repressor, N-terminal DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 7.3e-05 0.3 20 44 .. 311 335 .. 303 340 .. 0.84 2 ? -1.6 0.0 0.74 3e+03 40 51 .. 482 493 .. 481 498 .. 0.85 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 7.3e-05 HSSB-HHHHHHHHTS-HHHHHHHHH CS Fe_dep_repress 20 kkvvktkdlaerLnvspssVsemlk 44 +t ++ae+Lnv s+V + lk T309066_1 311 DPLTTTGEVAEELNVNHSTVVQHLK 335 5567899*************99886 PP == domain 2 score: -1.6 bits; conditional E-value: 0.74 HHHHHHHHHTTS CS Fe_dep_repress 40 semlkkLekdGy 51 + +l+kL++ Gy T309066_1 482 QPTLQKLNELGY 493 6689*******9 PP >> MarR_2 MarR family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 8.5e-05 0.35 11 43 .. 304 335 .. 301 337 .. 0.90 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 8.5e-05 HHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHH CS MarR_2 11 LaaLgrrpgrdl.tvselarrlglsksavsrilk 43 L a+ + ++ l t +e+a++l++ +s+v + lk T309066_1 304 LRAIIEGDP--LtTTGEVAEELNVNHSTVVQHLK 335 778888998..88******************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 678 (0.0415798); expected 326.1 (0.02) Passed bias filter: 401 (0.0245922); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3354.08 // Query: T309066_2 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.66 # Mc/sec: 2947.52 // Query: T309066_3 [L=679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-22 78.0 0.0 7.5e-22 76.9 0.0 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.9 0.0 4.6e-26 7.5e-22 13 67 .. 400 454 .. 393 461 .. 0.97 Alignments for each domain: == domain 1 score: 76.9 bits; conditional E-value: 4.6e-26 Transposase_1 13 dkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr 67 +++e+p ++pkp+lh kv++tVwWsa+gli+ +fl+pg+titse+Yaqq+++++ T309066_3 400 PSEEAPYHFPKPSLHPIKVLVTVWWSAAGLIHSSFLNPGKTITSEKYAQQINEMH 454 679***************************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.48 # Mc/sec: 4046.88 // Query: T155908_1 [L=3855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 515 (0.0315835); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.76 # Mc/sec: 14511.18 // Query: T155908_2 [L=3855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 453 (0.0277812); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.31s 00:00:01.80 Elapsed: 00:00:00.72 # Mc/sec: 15317.36 // Query: T155908_3 [L=3854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 423 (0.0259414); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:00.69 # Mc/sec: 15979.19 // Query: T171408_1 [L=3625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.35s 00:00:01.61 Elapsed: 00:00:00.71 # Mc/sec: 14606.35 // Query: T171408_2 [L=3625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-20 72.0 0.0 7.2e-20 71.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.2e-16 61.1 0.0 2.1e-16 60.2 0.0 1.4 1 RNase_H RNase H 1.4e-16 60.6 0.0 2.7e-16 59.7 0.0 1.5 1 rve Integrase core domain 9e-15 54.7 0.0 1.7e-14 53.8 0.0 1.5 1 RVP Retroviral aspartyl protease 2e-08 34.2 1.1 5.2e-08 32.9 1.1 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.0064 17.0 0.0 0.012 16.1 0.0 1.4 1 Asp_protease_2 Aspartyl protease ------ inclusion threshold ------ 0.013 16.0 0.0 0.022 15.1 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.3 0.0 3.1e-23 7.2e-20 1 204 [. 1914 2073 .. 1914 2085 .. 0.94 Alignments for each domain: == domain 1 score: 71.3 bits; conditional E-value: 3.1e-23 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 +pK+g+++yRp+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+aF+s++l+ + +kl+af+ + T171408_2 1914 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTVPNLYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPERQKLFAFQWE 1986 69*********7....7***********.........9*******999555............56788****************************** PP .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT- CS RVT_1 99 tklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesgl 196 ++ ++ +++y+++ lpq +++SP++f ++ + l+++ +r g++ll+Y+DD+l+ + + + + +a+ ++l+++g+ T171408_2 1987 DP-------------------ESGVTTQYTWTQLPQRFKNSPTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGY 2065 88...................34569************************************************************************ PP -BEGGG-E CS RVT_1 197 kinpeKtk 204 k++++K++ T171408_2 2066 KVSKKKSS 2073 ******97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.2 0.0 9.2e-20 2.1e-16 5 142 .. 2326 2467 .. 2323 2468 .. 0.80 Alignments for each domain: == domain 1 score: 60.2 bits; conditional E-value: 9.2e-20 EEEEEEEEECT.TTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-..HHHHHHHHCCCHHHHHTTSSSETTSS CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLk.alksdekvniytDS..kYvvkgitqwvhrwkknawkttseqk 96 +Y+DGs++ n ++e++ag+ v+ ++ a+ +s+ ++ ++ ++aEL+A+i aL+ + ++++vniytDS +++ ++ k+++ +s +k T171408_2 2326 ELYVDGSSFVNpQEERCAGYaVVTLDTvAEARSF--PQGTSTQKAELIALIRALElS--EGKTVNIYTDS*yVFLTLQVHGA--LCKEKGL-LNSGGK 2416 68*********6667799*977776632334444..467****************55..9*********9987777756653..3355555.677888 PP BHTT.HHHHHHHHHCHCSSEEEEEE-SCC..SSS..CHHHHHHHHHHHHHH CS RNase_H 97 pvkn.kelaellkelakkkkvqlkhvkgH..aGd..pkgNemaDrlAkeaa 142 ++k +e+ +ll+++ k++kv + h+ gH a+ + gN D A++aa T171408_2 2417 DIKYqQEILQLLEAVWKPHKVAVIHCGGHq*ASTlvGLGNSCTDLEAQKAA 2467 999889***********************8855557679*****9999987 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.7 0.0 1.1e-19 2.7e-16 3 108 .. 2591 2692 .. 2589 2692 .. 0.97 Alignments for each domain: == domain 1 score: 59.7 bits; conditional E-value: 1.1e-19 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p e +qvD+t+++ + gg++yllv + ++s+ + a+++++e +a++v+++l r + ++g p+r+ sDng +++ +++ ++ lgi++++++++ T171408_2 2591 APFEDLQVDFTEMP--KCGGNKYLLVLVCTYSGQVEAYPTRTE-KAHEVTRVLLRDLIPRFGL-PLRIGSDNGLVFVADLVQKTAKVLGITWKLHAAY 2684 689999********..9999***********************.******************9.********************************** PP rve 101 rpqdnGkv 108 +pq+ Gkv T171408_2 2685 QPQSSGKV 2692 ******98 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.8 0.0 7.2e-18 1.7e-14 3 100 .. 1702 1794 .. 1700 1795 .. 0.93 Alignments for each domain: == domain 1 score: 53.8 bits; conditional E-value: 7.2e-18 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 ++P++++ +ggk i +l+Dt A+++v++ + P + k++ + G+ g + ++++ ++ ++ +k+ + ++l +p++p++llGrdlL+kl ++ T171408_2 1702 KEPMVRMTVGGKDIDFLVDTSAEHSVVTASVAPLS----KKTIDIIGAMGVSaKQAFCLPQTCTIGGHKVIH--QFLYMPDCPLPLLGRDLLSKLRAT 1793 79*********************************....8888888888888799999999***********..*********************998 PP E CS RVP 100 L 100 + T171408_2 1794 I 1794 7 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 1.1 2.2e-11 5.2e-08 1 39 [] 2533 2571 .. 2533 2571 .. 0.99 Alignments for each domain: == domain 1 score: 32.9 bits; conditional E-value: 2.2e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 Hk+tHlG++ l++ll ++++ ++++++++V+++C++C+ T171408_2 2533 HKTTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCR 2571 **************************************5 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 5.2e-06 0.012 1 82 [. 1706 1778 .. 1706 1786 .. 0.75 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 5.2e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispelaeklglkvrksevtvrvsgaggevkarlvrld.slklggltlknvpalvldlgeei 82 v+ t++Gk+++fl+DT a +++++ ++a + +k+ t+ ++ga g + ++ + l+ + ++gg+++ +++l+++ +++ T171408_2 1706 VRMTVGGKDIDFLVDTSAEHSVVTASVA-----PLSKK--TIDIIGAMGVSAKQAFCLPqTCTIGGHKVI-HQFLYMP--DCP 1778 6789**********************99.....44443..577888888877777777756888888884.5777777..444 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 9.6e-06 0.022 1 90 [. 1706 1787 .. 1706 1789 .. 0.62 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 9.6e-06 EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGG-B..--------------EEEEE.EEEE.EETTEEEEEEEEEESSSSEEEEHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseelaerlglsrkddkgkvevktangeveakrvrld.svkiggielrnvsavvlegelddlLLGldfL 90 v +t+ gk+++flvDT A+++++++++a ls+k + + a g+ ++ l+ + +igg+++ +++ ++ ++ LLG d L T171408_2 1706 VRMTVGGKDIDFLVDTSAEHSVVTASVAP---LSKK----TIDIIGAMGVSAKQAFCLPqTCTIGGHKVI-HQFLYMP-DCPLPLLGRDLL 1787 5789********************99984...3333....245555555555544444424566666654.3455553.455556666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:00.70 # Mc/sec: 14815.01 // Query: T171408_3 [L=3625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-51 173.1 1.7 7e-51 172.6 1.7 1.2 1 Gag_p30 Gag P30 core shell protein 1.6e-24 85.9 0.2 3.5e-24 84.8 0.2 1.5 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 172.6 1.7 8.5e-55 7e-51 2 210 .. 1383 1592 .. 1382 1593 .. 0.94 Alignments for each domain: == domain 1 score: 172.6 bits; conditional E-value: 8.5e-55 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteer.qrvllearknvpgedgrptqlpne.vdeafpltrpdwdye 97 y pf+++dl nwk+n ps++e+pq+l l+++i+ th+ptw dc qll l+ t+er + vl a k ++ + q p+e v + +p t p+wd + T171408_3 1383 YQPFTSADLLNWKNNTPSYTEKPQALIDLLQTIIQTHNPTWADCHQLLMFLFKTDER*R-VLQAATKWLEEHALADYQNPQEyVRTQLPGTDPQWDPN 1479 89***************************************************998555.799999999999988889876648999*********87 PP Gag_p30 98 .taegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeat 194 + ++l+ yr++ll gl+ a++ tn+ kv ev+qgkeespa f erl eay +ytp+dp++pe++ + ++++ qs+ dir+klq+ g+ +++ T171408_3 1480 *RED-MQRLNRYRKALLEGLKRRAQKATNINKVSEVIQGKEESPAKFYERLCEAYCMYTPFDPDSPENQRMINMALVSQSTEDIRRKLQKKAGFAGMN 1576 7655.45599**************************************************************************************** PP Gag_p30 195 lkdlvkeaekvynkre 210 ++l+ a++v+ r+ T171408_3 1577 TSQLLEIANQVFVNRD 1592 ************9876 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.8 0.2 4.3e-28 3.5e-24 2 99 .. 1161 1254 .. 1160 1268 .. 0.92 Alignments for each domain: == domain 1 score: 84.8 bits; conditional E-value: 4.3e-28 XX---HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XX CS Gag_MA 2 qtvstPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpf 99 q++ tPL +l++fk + + +v + +kl+tlC+ +Wptl+vgWP eG+ d ++++kv +kv s+ +Gh+Dq pYi tW +Lv dPP+w++ T171408_3 1161 QNKPTPLGTMLKNFK--KGFNGDYGVTMTPGKLRTLCEIDWPTLEVGWPSEGSLDRSLVSKVWHKVTSK--SGHSDQFPYIDTWLQLVLDPPQWLRGQ 1254 8999**********9..5677899*******************************************77..************************865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.64 # Mc/sec: 16203.92 // Query: T337192_1 [L=6183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1869 (0.11462); expected 326.1 (0.02) Passed bias filter: 411 (0.0252054); expected 326.1 (0.02) Passed Vit filter: 335 (0.0205446); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.39u 0.61s 00:00:07.00 Elapsed: 00:00:01.41 # Mc/sec: 12545.04 // Query: T337192_2 [L=6183] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6183 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1496 (0.0917454); expected 326.1 (0.02) Passed bias filter: 478 (0.0293144); expected 326.1 (0.02) Passed Vit filter: 419 (0.0256961); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 6.02u 0.50s 00:00:06.52 Elapsed: 00:00:01.25 # Mc/sec: 14150.81 // Query: T337192_3 [L=6182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1461 (0.0895989); expected 326.1 (0.02) Passed bias filter: 288 (0.0176622); expected 326.1 (0.02) Passed Vit filter: 206 (0.0126334); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.35u 0.59s 00:00:04.93 Elapsed: 00:00:01.10 # Mc/sec: 16077.86 // Query: T132416_1 [L=4813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.36s 00:00:02.09 Elapsed: 00:00:00.88 # Mc/sec: 15646.79 // Query: T132416_2 [L=4813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4813 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.40s 00:00:02.22 Elapsed: 00:00:00.85 # Mc/sec: 16199.03 // Query: T132416_3 [L=4812] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 6.3 16.4 3.4 5.7 16.4 1.1 1 Atrophin-1 Atrophin-1 family 9.8 4.6 9.2 14 4.1 9.2 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> Atrophin-1 Atrophin-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 16.4 0.00041 3.4 594 625 .. 3806 3837 .. 3800 3855 .. 0.45 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00041 Atrophin-1 594 areekerekerekererererereaeraakas 625 +e+ere+er+++rer+rerere e + T132416_3 3806 RERERERERERQRKRERQRERERERENGVENT 3837 22233333333333333333333333333333 PP >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 9.2 0.0017 14 143 184 .. 3804 3845 .. 3800 3857 .. 0.60 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0017 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 143 krrpkekekekekkkkkekdrekekererekaserekkekkk 184 + r++e+e+e+e+++k e++re+e+ere+ ++++e +++++ T132416_3 3804 RERERERERERERQRKRERQRERERERENGVENTSETNPERH 3845 445555566666666666666666666666666665555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4812 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 519 (0.0318288); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.27u 0.44s 00:00:02.71 Elapsed: 00:00:00.89 # Mc/sec: 15467.77 // Query: T235385_1 [L=6006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.42s 00:00:02.26 Elapsed: 00:00:00.75 # Mc/sec: 22909.53 // Query: T235385_2 [L=6006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.40s 00:00:02.22 Elapsed: 00:00:00.84 # Mc/sec: 20454.93 // Query: T235385_3 [L=6006] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6006 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.39s 00:00:02.53 Elapsed: 00:00:00.84 # Mc/sec: 20454.93 // Query: T202692_1 [L=2293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 9790.87 // Query: T202692_2 [L=2293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-10 39.7 0.3 7.5e-10 38.9 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.9 0.3 4.6e-14 7.5e-10 33 96 .. 1823 1887 .. 1818 1893 .. 0.95 Alignments for each domain: == domain 1 score: 38.9 bits; conditional E-value: 4.6e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202692_2 1823 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 1887 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.65 # Mc/sec: 10092.13 // Query: T202692_3 [L=2293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-37 127.4 0.2 6.5e-37 126.8 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.8 0.2 4e-41 6.5e-37 1 168 [. 1424 1588 .. 1424 1589 .. 0.87 Alignments for each domain: == domain 1 score: 126.8 bits; conditional E-value: 4e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202692_3 1424 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1517 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202692_3 1518 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1588 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.65 # Mc/sec: 10092.13 // Query: T032052_1 [L=7749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.42u 0.40s 00:00:02.82 Elapsed: 00:00:01.00 # Mc/sec: 22168.57 // Query: T032052_2 [L=7749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.12u 0.40s 00:00:02.52 Elapsed: 00:00:00.73 # Mc/sec: 30367.91 // Query: T032052_3 [L=7748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:00.60 # Mc/sec: 36942.85 // Query: T110533_1 [L=1673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1673 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 639 (0.039188); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 9384.64 // Query: T110533_2 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.48 # Mc/sec: 9965.22 // Query: T110533_3 [L=1672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1672 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 648 (0.03974); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.48 # Mc/sec: 9965.22 // Query: T122148_1 [L=6190] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6190 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.36s 00:00:01.70 Elapsed: 00:00:00.56 # Mc/sec: 31622.39 // Query: T122148_2 [L=6189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.57 # Mc/sec: 30527.03 // Query: T122148_3 [L=6189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6189 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.36s 00:00:01.75 Elapsed: 00:00:00.56 # Mc/sec: 31062.59 // Query: T217369_1 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.47 # Mc/sec: 7328.59 // Query: T217369_2 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7029.47 // Query: T217369_3 [L=1204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49 # Mc/sec: 7029.47 // Query: T172343_1 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 9551.67 // Query: T172343_2 [L=1636] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1636 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.48 # Mc/sec: 9750.66 // Query: T172343_3 [L=1635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-17 61.5 0.0 1.7e-16 60.6 0.0 1.4 1 RNase_H RNase H 3.1e-05 24.0 0.3 8.2e-05 22.7 0.3 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.6 0.0 2e-20 1.7e-16 5 123 .. 149 267 .. 146 269 .. 0.85 Alignments for each domain: == domain 1 score: 60.6 bits; conditional E-value: 2e-20 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a + + ++++vniytDS+Y++ +++ vh++ +++ +s +k+vk T172343_3 149 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRASElS--EGKTVNIYTDSQYAFLTLQ--VHGALYKEKGLlNSGGKDVKY 243 68*******99999******766766.557778999****************8844..9**************9555..566644444443888899*** PP .HHHHHHHHHCHCSSEEEEEE-SC CS RNase_H 101 .kelaellkelakkkkvqlkhvkg 123 + + +ll+++ k++kv ++h++g T172343_3 244 *QGILQLLEAVWKPQKVAVMHCRG 267 **********************98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.3 1e-08 8.2e-05 1 32 [. 356 387 .. 356 387 .. 0.98 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 1e-08 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVi 32 H++tHlG++ l++ll +++++l++++++++V+ T172343_3 356 HETTHLGQESLEKLLGQYFYILHLSALAKTVV 387 9****************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.50 # Mc/sec: 9354.91 // Query: T277496_1 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.49 # Mc/sec: 15892.20 // Query: T277496_2 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.49 # Mc/sec: 15892.20 // Query: T277496_3 [L=2722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2722 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 14420.70 // Query: T155140_1 [L=2975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.2 7.2 6.1 1.8 6.6 6.1 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 6.1 0.00011 1.8 140 194 .. 129 267 .. 115 301 .. 0.43 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00011 CDC45 140 eedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse.............................................. 193 +++++e++ ++e+e+e +e ++e e++kkrk+ +++e + ++++++ +k++ + T155140_1 129 KKENKENKIKKEREKE-RERRREGEREKKRKEGRKKEGR-KERRKEGKKKE--Krklgavaqacnpstlgg*ggwia*aqefetslanmmkpcl**klkh 224 1111111111111111.1111111111122211111111.11111111111..12244566666666666666666666666666666666666666666 PP CDC45 194 ..........................................p 194 + T155140_1 225 *ldvvagtcnpsysgg*grellqparwrlq*akimplhsslgD 267 6666666666666666666666666666666666666555553 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 959 (0.0588127); expected 326.1 (0.02) Passed bias filter: 389 (0.0238562); expected 326.1 (0.02) Passed Vit filter: 90 (0.00551944); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:00.62 # Mc/sec: 13727.37 // Query: T155140_2 [L=2975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 712 (0.0436649); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.56 # Mc/sec: 14931.52 // Query: T155140_3 [L=2975] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2975 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 700 (0.042929); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.52 # Mc/sec: 16367.25 // Query: T178892_1 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2640.31 // Query: T178892_2 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.46 # Mc/sec: 2755.10 // Query: T178892_3 [L=443] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2640.31 // Query: T260947_1 [L=193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.46 # Mc/sec: 1200.30 // Query: T260947_2 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-14 53.1 0.2 3.4e-14 52.7 0.2 1.1 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.7 0.2 2.1e-18 3.4e-14 2 60 .. 31 89 .. 30 93 .. 0.96 Alignments for each domain: == domain 1 score: 52.7 bits; conditional E-value: 2.1e-18 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqr 60 y pf+++dl nw +n ps++e+pq+l l+++++ th+ptw d ll l+ +er++ T260947_2 31 YQPFTSADLLNWENNTPSYTEKPQALIDLLQTVIQTHNPTWADRHPLLMFLFKRDERRK 89 89*****************************************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 1194.09 // Query: T260947_3 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-10 40.5 0.0 2.4e-10 40.2 0.0 1.1 1 Gag_p30 Gag P30 core shell protein 0.0081 15.9 0.0 0.0093 15.7 0.0 1.1 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.2 0.0 3e-14 2.4e-10 87 151 .. 119 183 .. 101 189 .. 0.84 Alignments for each domain: == domain 1 score: 40.2 bits; conditional E-value: 3e-14 Gag_p30 87 fpltrpdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeay 151 +p t + d + e ++l+ r++ll g++ a + tn+ kv ev+qgkeespa f erl ea T260947_3 119 LPGTHTQLDPHEREDMQRLNRDREALLEGFKRGAEKATNVNKVSEVIQGKEESPAQFYERLCEAC 183 6677777777778888889999*****************************************96 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 1.1e-06 0.0093 77 148 .. 116 185 .. 75 191 .. 0.77 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.1e-06 Gag_p24 77 sdmllgtgqlla.eqsqlmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrk 148 +l+gt l+ ++ + mq l+ r+++l ++++ +++++ ++++++ QG++E+ +f +Rl +a + T260947_3 116 RTQLPGTHTQLDpHEREDMQ---RLNRDREALLEGFKRGAEKATNVNKVSEVIQGKEESPAQFYERLCEACGR 185 33444443322202233333...477779999***********************************999765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 477 (0.029253); expected 326.1 (0.02) Passed bias filter: 345 (0.0211579); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.46 # Mc/sec: 1194.09 // Query: T277659_1 [L=6419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:00.56 # Mc/sec: 32792.26 // Query: T277659_2 [L=6418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 383 (0.0234883); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.31s 00:00:01.76 Elapsed: 00:00:00.59 # Mc/sec: 31120.01 // Query: T277659_3 [L=6418] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6418 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.34s 00:00:01.68 Elapsed: 00:00:00.56 # Mc/sec: 32211.94 // Query: T138385_1 [L=1718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49 # Mc/sec: 10030.42 // Query: T138385_2 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 401 (0.0245922); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 9446.24 // Query: T138385_3 [L=1717] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1717 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 568 (0.0348338); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.51 # Mc/sec: 9631.46 // Query: T102656_1 [L=12810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 484 (0.0296823); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.65u 0.42s 00:00:03.07 Elapsed: 00:00:00.70 # Mc/sec: 52353.19 // Query: T102656_2 [L=12810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.70u 0.39s 00:00:03.09 Elapsed: 00:00:00.68 # Mc/sec: 53892.99 // Query: T102656_3 [L=12810] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 12.0 0.1 0.36 11.1 0.1 1.3 1 CENP-B_dimeris Centromere protein B dimerisation domain Domain annotation for each model (and alignments): >> CENP-B_dimeris Centromere protein B dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.1 2.2e-05 0.36 24 59 .. 3201 3236 .. 3196 3254 .. 0.74 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 2.2e-05 CENP-B_dimeris 24 eedeededeeddedddevpvpsfgeamayfamvkry 59 ++d+e+ed+++d ddd vp ++ + m+kr+ T102656_3 3201 DKDDENEDDDNDHDDDGRCVPVGYHMICTLLMMKRH 3236 567777777777777777777666677778888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (12810 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 465 (0.0285171); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.61u 0.44s 00:00:03.05 Elapsed: 00:00:00.70 # Mc/sec: 52353.19 // Query: T073912_1 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00035 20.8 11.8 0.0029 17.8 11.8 2.2 1 WAP WAP-type (Whey Acidic Protein) 'four-disulfide core Domain annotation for each model (and alignments): >> WAP WAP-type (Whey Acidic Protein) 'four-disulfide core' # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 11.8 1.8e-07 0.0029 15 46 .] 193 233 .. 157 233 .. 0.66 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.8e-07 WAP 15 a........stcsdeCssDsdCpgnqKCC.ssgcgrvCveP 46 + C +D+dC++ +KCC + cg +C++P T073912_1 193 SkqqskistYCSGIPCINDYDCRDLRKCCgTFRCGLRCIHP 233 04553444344556788************8778**88**98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 351 (0.0215258); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44 # Mc/sec: 1892.05 // Query: T073912_2 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.49 # Mc/sec: 1698.98 // Query: T073912_3 [L=291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 1734.38 // Query: T214292_1 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.8 7.3 7.8 2.8 8.0 0.9 2.7 3 Sex_peptide Sex peptide (SP) family Domain annotation for each model (and alignments): >> Sex_peptide Sex peptide (SP) family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.35 5.7e+03 32 45 .. 197 211 .. 191 215 .. 0.66 2 ? 2.6 0.4 0.0082 1.3e+02 29 46 .. 253 270 .. 248 275 .. 0.85 3 ? 8.0 0.9 0.00017 2.8 32 43 .. 279 290 .. 273 301 .. 0.88 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.35 SSSS-STTSS-.-SS CS Sex_peptide 32 pipspnprdkw.crl 45 +ps pr c l T214292_1 197 ALPSGTPRSTHvCLL 211 678999987531544 PP == domain 2 score: 2.6 bits; conditional E-value: 0.0082 -S-SSSS-STTSS--SS- CS Sex_peptide 29 tkypipspnprdkwcrln 46 ++y p pr +w r+ T214292_1 253 SRYDTKKPSPRAQWWRVG 270 6899999*******9975 PP == domain 3 score: 8.0 bits; conditional E-value: 0.00017 SSSS-STTSS-- CS Sex_peptide 32 pipspnprdkwc 43 pipsp p dkw T214292_1 279 PIPSPLPADKWL 290 9**********5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 114 (0.00699129); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 2440.84 // Query: T214292_2 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.46 # Mc/sec: 2487.68 // Query: T214292_3 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.50 # Mc/sec: 2288.66 // Query: T090254_1 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.50 # Mc/sec: 12061.26 // Query: T090254_2 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.53 # Mc/sec: 11378.55 // Query: T090254_3 [L=2107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 11591.86 // Query: T213222_1 [L=2484] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-12 47.9 2.0 2e-12 47.0 2.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.0 2.0 1.2e-16 2e-12 3 96 .. 1617 1712 .. 1612 1713 .. 0.93 Alignments for each domain: == domain 1 score: 47.0 bits; conditional E-value: 1.2e-16 -TT.S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEEE.EEBCCGCCCSBB-GGGGGGG-EE CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...eellkalkkkkkaklllk.lDlkkaFdsvpleellrkltafk 96 K ++++Rpi l+++d k+lnk++++r + +++kl++++q+ f pg + + ++ ++ +++++++ +++++ +D +k F+++++++ l++l++++ T213222_1 1617 K--KENFRPIFLMNIDAKILNKILVNRVQHHIKKLIHHDQVSFIPGMQGWFNIhksINIIHHINRTNDKNHMII*IDAEKTFNKIQHPFMLKTLNKLG 1712 3..369************************************************997888888******************************99876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2484 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 438 (0.0268613); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.54 # Mc/sec: 13159.82 // Query: T213222_2 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-79 267.8 3.7 1.2e-79 267.8 3.7 1.9 3 Transposase_22 L1 transposable element 2.9e-05 23.6 0.0 5.3e-05 22.7 0.0 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 267.8 3.7 1.4e-83 1.2e-79 207 367 .. 912 1074 .. 907 1075 .. 0.98 2 ? -4.5 0.6 0.82 6.7e+03 142 177 .. 1394 1430 .. 1391 1431 .. 0.80 3 ? -3.0 0.7 0.29 2.3e+03 53 85 .. 1861 1891 .. 1837 1895 .. 0.66 Alignments for each domain: == domain 1 score: 267.8 bits; conditional E-value: 1.4e-83 HHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHH CS Transposase_22 207 klenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewt 299 ++e++l++ii+enfPnl+++an++iqei+r ++ +ra++rhiivr++kv++k+k+l+a+rekG+vt+kGkPirlt dlsaetl+arr+w+ T213222_2 912 RMEDTLQDIIQENFPNLARQANIQIQEIQRISLGRSLRRATPRHIIVRFSKVEMKEKMLRAAREKGQVTYKGKPIRLTVDLSAETLQARRKWG 1004 5799***************************************************************************************** PP HHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 300 dviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +++ilkek+fqPr++yPakls+i++Ge+k f dk++lrd+++trPal++llke ++erk+ q+l+++ T213222_2 1005 AIFNILKEKNFQPRISYPAKLSFISKGELKPFPDKQMLRDFVTTRPALQELLKEalNMERKNWCQPLQKH 1074 ********************************************************************98 PP == domain 2 score: -4.5 bits; conditional E-value: 0.82 HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 142 ssridele.ervsaaedeieeidrevkerekrkkile 177 ++ i +le r+ ++ +++e++++ + + k ++le T213222_2 1394 NAHIRKLErSRIDTLTSQLKELEKQEQTNSKASRRLE 1430 5667778735999999999999999999999999887 PP == domain 3 score: -3.0 bits; conditional E-value: 0.29 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Transposase_22 53 kkdfykelkelieskakelealkekeentekql 85 + + ke+k+l + + kel lke +e+t+kq T213222_2 1861 RIQLTKEMKDLFKENYKEL--LKEIREDTNKQK 1891 4455566666666666654..566666666664 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 0.0 6.4e-09 5.3e-05 135 218 .. 1751 1860 .. 1721 1864 .. 0.90 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 6.4e-09 T-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHHHHHHHHHHH..HHHHHTT--BEGGG-EEE............... CS RVT_1 135 GsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskeelqelleave..ewlkesglkinpeKtklvlf............s 209 G++lSPllfn++++ l +r++ k+v++ ++a ++++ +++ +++l ++++ ++ + sg+kin +K++++l+ + T213222_2 1751 GCPLSPLLFNIVLEVLASAIRQEKeimgiqigrKEVQFFLFAHNMIVYLENP-IVSQLKNSLS**ATSAVSGYKINVKKSQAFLYtsnrqaesqimsE 1847 9*********************99*************************995.578888999999999***************999988887776651 PP ......ESSEEET CS RVT_1 210 g....kseevkyL 218 ++++kyL T213222_2 1848 LpftaATKKIKYL 1860 1445688899988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 551 (0.0337912); expected 326.1 (0.02) Passed bias filter: 180 (0.0110389); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.53 # Mc/sec: 13402.72 // Query: T213222_3 [L=2483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-08 33.0 0.4 7.2e-08 31.8 0.4 1.7 1 DUF1725 Protein of unknown function (DUF1725) 1.4e-06 27.8 1.2 2.6e-06 26.9 1.2 1.4 1 Zn_Tnp_IS91 Transposase zinc-binding domain Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 0.4 8.8e-12 7.2e-08 1 19 [] 2438 2456 .. 2438 2456 .. 0.98 Alignments for each domain: == domain 1 score: 31.8 bits; conditional E-value: 8.8e-12 DUF1725 1 kFagKWMELEnIILSEisQ 19 +Fag+WM+LE IILS+ sQ T213222_3 2438 SFAGTWMKLEAIILSKLSQ 2456 7*****************9 PP >> Zn_Tnp_IS91 Transposase zinc-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 1.2 3.2e-10 2.6e-06 35 107 .. 739 810 .. 717 812 .. 0.89 Alignments for each domain: == domain 1 score: 26.9 bits; conditional E-value: 3.2e-10 Zn_Tnp_IS91 35 ealggaeykCedCgheklvynsCknrhCpkCqakateewlekqkeellpveyfhvvfTlpkeLrelflsnkkl 107 ++ + + +C++ +++k sC + C++C a+a ++w+e+ +el ++ ++ +v+T +eL++ +l+n + T213222_3 739 KSRKMRKNQCKNAENSKNQNASCPSNDCNSCPARA-QNWTENEIDELTEAGFRRWVITNSSELKDHVLTNARK 810 45667889***********************9875.79***************************99999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.54 # Mc/sec: 13154.52 // Query: T353745_1 [L=7345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.8 0.0 0.003 17.7 0.0 2.4 2 Ank_5 Ankyrin repeats (many copies) 0.00069 20.0 0.0 0.0015 18.9 0.0 1.5 1 Ank_2 Ankyrin repeats (3 copies) ------ inclusion threshold ------ 0.025 15.0 0.0 0.058 13.9 0.0 1.7 1 Ank_4 Ankyrin repeats (many copies) 0.036 14.5 0.0 2.5 8.8 0.0 3.0 2 Ank_3 Ankyrin repeat 0.087 13.2 0.1 15 6.1 0.0 3.0 2 Ank Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.8 0.0 0.0055 18 7 53 .. 1398 1444 .. 1393 1444 .. 0.87 2 ! 17.7 0.0 9.3e-07 0.003 6 52 .. 1430 1476 .. 1425 1476 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0055 Ank_5 7 advnrldgggntpLhlAakggalevvrlLlargadlnltdsrgltal 53 a + ++d +gntpL Aa gg++ +++l + ga++n + + g+t+l T353745_1 1398 ALAECEDSYGNTPLSEAAAGGQPLAIQLRAELGASPNSKGAFGPTPL 1444 667789999*************9999999999********9999997 PP == domain 2 score: 17.7 bits; conditional E-value: 9.3e-07 Ank_5 6 padvnrldgggntpLhlAakggalevvrlLlargadlnltdsrglta 52 a++n+ +g tpL Aa gg+l +v++Ll+ gad++++ ++g t+ T353745_1 1430 GASPNSKGAFGPTPLYRAAFGGHLAAVEVLLKLGADPRVYAEDGSTP 1476 599999999999*********************************98 PP >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 4.6e-07 0.0015 21 81 .. 1401 1467 .. 1373 1470 .. 0.74 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 4.6e-07 Ank_2 21 dpnk.ngetaLhyAarngnleivklLleha..ad...ndgrtaLhlAarsghleivklLlekgadin 81 ++++ g+t+L Aa +g+ +++l e + + g t+L+ Aa+ ghl +v++Ll+ gad+ T353745_1 1401 ECEDsYGNTPLSEAAAGGQPLAIQLRAELGasPNskgAFGPTPLYRAAFGGHLAAVEVLLKLGADPR 1467 3332489**********986555555553335443457799*******99**********88**986 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.8e-05 0.058 2 55 .] 1408 1460 .. 1407 1460 .. 0.94 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.8e-05 Ank_4 2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 +t+L aa+ g+ +++l e ga++n + G t+l++Aa +g++ +++ Ll T353745_1 1408 NTPLSEAAAGGQPLAIQLRAELGASPNSK-GAFGPTPLYRAAFGGHLAAVEVLL 1460 79999999999999999999********9.*********************997 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.094 3.1e+02 1 30 [. 1406 1434 .. 1406 1435 .. 0.74 2 ? 8.8 0.0 0.00076 2.5 2 30 .. 1440 1467 .. 1439 1468 .. 0.93 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.094 Ank_3 1 nGetpLhlAarsgrpeivkfLlenlgadvn 30 +G+tpL +Aa g+p ++ L lga +n T353745_1 1406 YGNTPLSEAAAGGQPL-AIQLRAELGASPN 1434 79**********9997.5544444666655 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00076 Ank_3 2 GetpLhlAarsgrpeivkfLlenlgadvn 30 G tpL +Aa g+++ v+ Ll+ lgad++ T353745_1 1440 GPTPLYRAAFGGHLAAVEVLLK-LGADPR 1467 77********************.****96 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.027 86 1 30 [. 1406 1436 .. 1406 1438 .. 0.83 2 ? 6.1 0.0 0.0047 15 4 27 .. 1442 1466 .. 1440 1471 .. 0.91 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.027 TSBBHHHHHHHHTTHHHHHHH...HTTTSTTCB CS Ank 1 dGnTPLHlAatngkkriiklL...LhGAdlnal 30 +GnTPL Aa +g++ i+ L L GA++n++ T353745_1 1406 YGNTPLSEAAAGGQPLAIQ-LraeL-GASPNSK 1436 7******999899999999.75555.9999976 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0047 BHHHHHHHHTTHHHHHHHHT.TTST CS Ank 4 TPLHlAatngkkriiklLLh.GAdl 27 TPL Aa +g++ ++ LL+ GAd+ T353745_1 1442 TPLYRAAFGGHLAAVEVLLKlGADP 1466 9*****************955**97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.92u 0.40s 00:00:02.31 Elapsed: 00:00:00.82 # Mc/sec: 25625.36 // Query: T353745_2 [L=7345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 8.9 5.1 3.4 7.3 5.1 1.9 1 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.1 0.00021 3.4 7 23 .. 4259 4275 .. 4258 4276 .. 0.94 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00021 DUF3704 7 SFGYMPksgIAGSSdSi 23 S+GY P +gIAGS +S+ T353745_2 4259 SSGYIPSNGIAGSNGSS 4275 9************9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1088 (0.0667239); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.20u 0.46s 00:00:03.66 Elapsed: 00:00:00.97 # Mc/sec: 21662.68 // Query: T353745_3 [L=7344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.29u 0.50s 00:00:02.79 Elapsed: 00:00:00.90 # Mc/sec: 23344.37 // Query: T353447_1 [L=1994] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1994 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1501 (0.092052); expected 326.1 (0.02) Passed bias filter: 312 (0.0191341); expected 326.1 (0.02) Passed Vit filter: 148 (0.00907641); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.34s 00:00:02.21 Elapsed: 00:00:00.78 # Mc/sec: 7313.46 // Query: T353447_2 [L=1993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1266 (0.0776401); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 70 (0.0042929); expected 16.3 (0.001) Passed Fwd filter: 23 (0.00141052); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.31s 00:00:01.69 Elapsed: 00:00:00.73 # Mc/sec: 7810.46 // Query: T353447_3 [L=1993] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1993 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1279 (0.0784374); expected 326.1 (0.02) Passed bias filter: 283 (0.0173556); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.35s 00:00:01.73 Elapsed: 00:00:00.72 # Mc/sec: 7918.94 // Query: T111801_1 [L=1333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 5958.57 // Query: T111801_2 [L=1333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 6355.81 // Query: T111801_3 [L=1333] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1333 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 7062.01 // Query: T381506_1 [L=4127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.85 # Mc/sec: 13890.17 // Query: T381506_2 [L=4127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.87 # Mc/sec: 13570.86 // Query: T381506_3 [L=4127] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4127 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.37s 00:00:01.90 Elapsed: 00:00:00.80 # Mc/sec: 14758.31 // Query: T051399_1 [L=5809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.35s 00:00:02.08 Elapsed: 00:00:00.87 # Mc/sec: 19101.79 // Query: T051399_2 [L=5809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.68u 0.39s 00:00:02.06 Elapsed: 00:00:00.78 # Mc/sec: 21305.85 // Query: T051399_3 [L=5809] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5809 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.69u 0.37s 00:00:02.06 Elapsed: 00:00:00.75 # Mc/sec: 22158.08 // Query: T272759_1 [L=756] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0038 16.8 2.4 0.0062 16.1 0.1 2.4 2 IQ IQ calmodulin-binding motif Domain annotation for each model (and alignments): >> IQ IQ calmodulin-binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.2 0.13 2e+03 11 21 .] 346 356 .. 346 356 .. 0.87 2 ! 16.1 0.1 3.8e-07 0.0062 4 20 .. 445 461 .. 445 462 .. 0.91 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.13 HHHHHHHHHHH CS IQ 11 wRgylaRkryk 21 wRg++ + ++ T272759_1 346 WRGFVLTRSFR 356 9***9988886 PP == domain 2 score: 16.1 bits; conditional E-value: 3.8e-07 HHHHHHHHHHHHHHHHH CS IQ 4 aikIQaawRgylaRkry 20 ++++Qa++Rg+l Rkr+ T272759_1 445 VTVMQAHVRGWLERKRL 461 689************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (756 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 300 (0.0183981); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 4505.81 // Query: T272759_2 [L=755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.57 # Mc/sec: 3724.01 // Query: T272759_3 [L=755] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (755 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 3483.75 // Query: T361550_1 [L=2058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 8658.22 // Query: T361550_2 [L=2058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 358 (0.0219551); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.73 # Mc/sec: 8065.19 // Query: T361550_3 [L=2058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.67 # Mc/sec: 8787.44 // Query: T375556_1 [L=579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 248 (0.0152091); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 2629.24 // Query: T375556_2 [L=579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 90 (0.00551944); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 2807.49 // Query: T375556_3 [L=579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (579 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.63 # Mc/sec: 2629.24 // Query: T138118_1 [L=7012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1087 (0.0666626); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.09u 0.46s 00:00:03.55 Elapsed: 00:00:01.04 # Mc/sec: 19288.60 // Query: T138118_2 [L=7011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1292 (0.0792346); expected 326.1 (0.02) Passed bias filter: 318 (0.019502); expected 326.1 (0.02) Passed Vit filter: 116 (0.00711395); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.99u 0.56s 00:00:04.55 Elapsed: 00:00:01.09 # Mc/sec: 18401.17 // Query: T138118_3 [L=7011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1190 (0.0729793); expected 326.1 (0.02) Passed bias filter: 322 (0.0197473); expected 326.1 (0.02) Passed Vit filter: 107 (0.006562); expected 16.3 (0.001) Passed Fwd filter: 39 (0.00239176); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.10u 0.55s 00:00:04.64 Elapsed: 00:00:01.21 # Mc/sec: 16576.26 // Query: T257958_1 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 8375.33 // Query: T257958_2 [L=1698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 7590.14 // Query: T257958_3 [L=1697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.60 # Mc/sec: 8091.38 // Query: T353455_1 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1299 (0.0796639); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.68 # Mc/sec: 6239.13 // Query: T353455_2 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1511 (0.0926653); expected 326.1 (0.02) Passed bias filter: 329 (0.0201766); expected 326.1 (0.02) Passed Vit filter: 157 (0.00962836); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.35s 00:00:01.87 Elapsed: 00:00:00.64 # Mc/sec: 6624.61 // Query: T353455_3 [L=1482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1276 (0.0782534); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.59 # Mc/sec: 7186.02 // Query: T157444_1 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 782 (0.0479578); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.77 # Mc/sec: 4294.96 // Query: T157444_2 [L=1156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 762 (0.0467313); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.68 # Mc/sec: 4863.41 // Query: T157444_3 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1051 (0.0644548); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.69 # Mc/sec: 4788.78 // Query: T295528_1 [L=3469] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3469 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.73 # Mc/sec: 13594.82 // Query: T295528_2 [L=3468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:00.72 # Mc/sec: 13779.66 // Query: T295528_3 [L=3468] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3468 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:00.68 # Mc/sec: 14590.23 // Query: T358864_1 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3218.43 // Query: T358864_2 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.62 # Mc/sec: 3525.28 // Query: T358864_3 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 3642.79 // Query: T138224_1 [L=14248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.73u 0.47s 00:00:04.20 Elapsed: 00:00:00.96 # Mc/sec: 42459.49 // Query: T138224_2 [L=14248] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14248 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.97u 0.51s 00:00:04.48 Elapsed: 00:00:01.06 # Mc/sec: 38453.87 // Query: T138224_3 [L=14247] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (14247 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.74u 0.63s 00:00:05.37 Elapsed: 00:00:01.23 # Mc/sec: 33136.78 // Query: T035802_1 [L=1104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 393 (0.0241016); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.74 # Mc/sec: 4268.05 // Query: T035802_2 [L=1104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 4859.01 // Query: T035802_3 [L=1104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 6445.63 // Query: T375589_1 [L=627] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (627 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3736.96 // Query: T375589_2 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47 # Mc/sec: 3810.38 // Query: T375589_3 [L=626] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (626 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.48 # Mc/sec: 3731.00 // Query: T239477_1 [L=1638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-51 174.8 1.8 3e-51 173.9 1.8 1.4 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.0067 15.9 0.3 0.014 14.9 0.3 1.4 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.79 10.1 0.0 0.79 10.1 0.0 3.0 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 173.9 1.8 5.5e-55 3e-51 1 222 [] 971 1227 .. 971 1227 .. 0.95 Alignments for each domain: == domain 1 score: 173.9 bits; conditional E-value: 5.5e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l T239477_1 971 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFML 1068 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ T239477_1 1069 KTLNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpM 1166 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 ++q+ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239477_1 1167 VSAQNLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 1227 66***************************99999988877761156678*********986 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.3 2.5e-06 0.014 47 111 .. 1296 1365 .. 1285 1368 .. 0.78 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 2.5e-06 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239477_1 1296 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 1365 5678888885444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.8 1.7 3 1.6e+04 12 20 .. 1341 1349 .. 1339 1354 .. 0.71 2 ? 10.1 0.0 0.00014 0.79 3 30 .. 1407 1434 .. 1405 1436 .. 0.90 3 ? 4.2 0.3 0.0098 53 23 50 .. 1503 1530 .. 1497 1532 .. 0.86 Alignments for each domain: == domain 1 score: -5.8 bits; conditional E-value: 3 YlbE 12 yWYrkLnRn 20 +WY + nR+ T239477_1 1341 AWYWYQNRD 1349 688887886 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00014 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239477_1 1407 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 1434 677999*******************985 PP == domain 3 score: 4.2 bits; conditional E-value: 0.0098 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239477_1 1503 LISRIYNELKQIYKKKTNNHIKKWAKDM 1530 5778889***************998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 682 (0.0418251); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.50 # Mc/sec: 9372.08 // Query: T239477_2 [L=1638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.47 # Mc/sec: 9970.30 // Query: T239477_3 [L=1637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1637 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.47 # Mc/sec: 9964.21 // Query: T138446_1 [L=3511] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3511 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.53 # Mc/sec: 18951.65 // Query: T138446_2 [L=3510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.54 # Mc/sec: 18595.40 // Query: T138446_3 [L=3510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 18257.30 // Query: T232526_1 [L=479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 493 (0.0302343); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 2854.87 // Query: T232526_2 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 569 (0.0348951); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 2790.77 // Query: T232526_3 [L=478] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (478 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 587 (0.035999); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.47 # Mc/sec: 2909.52 // Query: T011929_1 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.46 # Mc/sec: 6411.99 // Query: T011929_2 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.46 # Mc/sec: 6411.99 // Query: T011929_3 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.48 # Mc/sec: 6144.82 // Query: T316850_1 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1688 (0.10352); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.56 # Mc/sec: 8470.10 // Query: T316850_2 [L=1658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1406 (0.0862259); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.28s 00:00:01.31 Elapsed: 00:00:00.55 # Mc/sec: 8624.10 // Query: T316850_3 [L=1657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2108 (0.129278); expected 326.1 (0.02) Passed bias filter: 256 (0.0156997); expected 326.1 (0.02) Passed Vit filter: 112 (0.00686864); expected 16.3 (0.001) Passed Fwd filter: 31 (0.00190114); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.36s 00:00:02.00 Elapsed: 00:00:00.61 # Mc/sec: 7771.14 // Query: T018816_1 [L=1059] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-30 105.4 13.6 2.8e-30 105.4 13.6 4.3 4 CCDC144C CCDC144C protein coiled-coil region 0.0029 17.5 1.1 0.0029 17.5 1.1 3.4 4 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 3.5 0.081 6.6e+02 194 235 .. 160 201 .. 144 237 .. 0.58 2 ! 13.2 1.2 4.1e-06 0.033 96 143 .. 348 393 .. 335 394 .. 0.87 3 ! 105.4 13.6 3.5e-34 2.8e-30 184 304 .. 432 543 .. 421 544 .. 0.94 4 ? -5.2 21.1 1.7 1.4e+04 120 231 .. 590 705 .. 559 708 .. 0.78 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.081 CCDC144C 194 qikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrq 235 + l ++++e+e+ +++ +kq ++e +se + L + T018816_1 160 AEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSE 201 444444444444444444444444444444444444444433 PP == domain 2 score: 13.2 bits; conditional E-value: 4.1e-06 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018816_1 348 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 393 689**********************9554.57..89*********9976 PP == domain 3 score: 105.4 bits; conditional E-value: 3.5e-34 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernkeL 283 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk+L T018816_1 432 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNKKL 522 568**************************************************************.*********........***************** PP CCDC144C 284 inecnhl.kerlyqyekekaer 304 +nec+ ke+l++ye+ekaer T018816_1 523 MNECD-H*KESLFRYEREKAER 543 ****7.55589**********8 PP == domain 4 score: -5.2 bits; conditional E-value: 1.7 CCDC144C 120 afqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yigk 215 + + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ ++++ T018816_1 590 QVESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQE 689 3445557788899999999999999999999998444588999999999999998887777778899999999999999999776666666665526778 PP CCDC144C 216 qesleerlsqlqsenl 231 q ++ +l ql+++ + T018816_1 690 QAQYKKQLEQLNKDII 705 8899999999987765 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.6 0.81 6.6e+03 14 57 .. 156 200 .. 150 235 .. 0.63 2 ! 17.5 1.1 3.5e-07 0.0029 24 94 .. 434 503 .. 430 504 .. 0.95 3 ? -2.6 0.0 0.55 4.5e+03 61 80 .. 547 566 .. 541 574 .. 0.73 4 ? -0.1 11.6 0.093 7.6e+02 9 97 .. 616 702 .. 610 707 .. 0.85 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.81 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvk.dankairdA 57 ++l+ + l + le+++e ++ +++ +++e + ++++ i++ T018816_1 156 QTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNtNKSEKIQLS 200 566666666666777777776666664444444433444444444 PP == domain 2 score: 17.5 bits; conditional E-value: 3.5e-07 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018816_1 434 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 503 68999********************************************************76.9999986 PP == domain 3 score: -2.6 bits; conditional E-value: 0.55 XXXXXXXXXXXXXXXXXXXX CS Laminin_II 61 vkkLeklapqLldklkelkq 80 v++L+++a + l+kl l+ T018816_1 547 VRQLQQEAADSLKKLTMLES 566 78888888888888777765 PP == domain 4 score: -0.1 bits; conditional E-value: 0.093 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseike 97 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ + T018816_1 616 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLNK 702 55555666678999*********************************************************999994..4777776654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2080 (0.12756); expected 326.1 (0.02) Passed bias filter: 294 (0.0180302); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 5940.43 // Query: T018816_2 [L=1058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-08 31.7 3.0 1.1e-07 31.2 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 3.0 6.8e-12 1.1e-07 145 185 .. 393 433 .. 393 435 .. 0.97 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 6.8e-12 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018816_2 393 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 433 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 6305.75 // Query: T018816_3 [L=1058] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-30 104.1 16.4 6.9e-30 104.1 16.4 2.0 2 CCDC144C CCDC144C protein coiled-coil region 1.7e-16 60.4 6.5 1.7e-16 60.4 6.5 2.4 2 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 1.3 9.2 12.1 1.6 9.0 0.6 2.5 2 CCDC-167 Coiled-coil domain-containing protein 167 1.6 8.4 18.2 1.6 8.4 2.7 3.1 3 betaPIX_CC betaPIX coiled coil Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.1 16.4 1.7e-33 6.9e-30 1 96 [. 253 348 .. 253 349 .. 0.99 2 ? 0.5 0.7 0.06 2.5e+02 74 108 .. 717 751 .. 702 766 .. 0.71 Alignments for each domain: == domain 1 score: 104.1 bits; conditional E-value: 1.7e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018816_3 253 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 348 9*********************************************************************************************95 PP == domain 2 score: 0.5 bits; conditional E-value: 0.06 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018816_3 717 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 751 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 6.4 4 1.6e+04 30 87 .. 275 331 .. 257 346 .. 0.57 2 ! 60.4 6.5 4.1e-20 1.7e-16 3 69 .. 710 775 .. 709 777 .. 0.93 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 4 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018816_3 275 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 331 555.344666666666666666666555555555555555555555555555544444 PP == domain 2 score: 60.4 bits; conditional E-value: 4.1e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllvek 69 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k T018816_3 710 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRK 775 78*********************.***********************************97766665 PP >> CCDC-167 Coiled-coil domain-containing protein 167 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 5.2 0.016 64 12 67 .. 266 326 .. 256 331 .. 0.83 2 ? 9.0 0.6 0.00039 1.6 18 73 .. 713 769 .. 705 772 .. 0.88 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.016 CCDC-167 12 klasc.rerLeaverrlrkeelseeeResle....eEeaslkeqleenekeLksLrkeNrk 67 ++ + +++Le+ ++ l+++++ ++ +le e+ ++ + ++++eL+ L+ eN + T018816_3 266 EIRTMkNDNLEKENKYLKDVKIVKKTNAALEkyikLNEELITRTAFRYQQELNDLKAENTR 326 444441578*****************99999777667788999999*************86 PP == domain 2 score: 9.0 bits; conditional E-value: 0.00039 CCDC-167 18 erLeaverrlrkeelseee.ResleeEeaslkeqleenekeLksLrkeNrksmllsv 73 L++v+ + +k + ee ++lee +++ l+ n + k+L k N+k ++s+ T018816_3 713 LTLKDVDCKFYKMKTAYEEvTTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISI 769 57999****9998877665489********************************997 PP >> betaPIX_CC betaPIX coiled coil # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 3.0 0.00096 3.9 30 75 .. 246 291 .. 241 300 .. 0.84 2 ? 8.4 2.7 0.0004 1.6 35 72 .. 308 345 .. 296 349 .. 0.85 3 ? 0.8 0.2 0.093 3.8e+02 37 80 .. 722 765 .. 702 771 .. 0.84 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00096 betaPIX_CC 30 ekslVDtVYaLkdevqelkqenkklkk.sleeEqkaRkdLEkvvrkl 75 k l D +Lk +++ l+qe + +k le+E+k kd+ k+v+k T018816_3 246 MKDLMDENCILKTDIAILRQEIRTMKNdNLEKENKYLKDV-KIVKKT 291 588999999****************9737******99998.677776 PP == domain 2 score: 8.4 bits; conditional E-value: 0.0004 betaPIX_CC 35 DtVYaLkdevqelkqenkklkksleeEqkaRkdLEkvv 72 t + + e++ lk en +l+ l +E+ + k+LE + T018816_3 308 RTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEI 345 56677789***************************877 PP == domain 3 score: 0.8 bits; conditional E-value: 0.093 betaPIX_CC 37 VYaLkdevqelkqenkklkksleeEqkaRkdLEkvvrkllksin 80 Y +k +e+ +e+ + k ++ ka + k + k+ k+i T018816_3 722 FYKMKTAYEEVTTELEEYKEAFAAALKANSSMSKKLTKSNKKIA 765 699*****************************999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1058 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 6177.06 // Query: T000163_1 [L=3337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.51 # Mc/sec: 18718.80 // Query: T000163_2 [L=3337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 343 (0.0210352); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.27s 00:00:01.29 Elapsed: 00:00:00.55 # Mc/sec: 17357.44 // Query: T000163_3 [L=3336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.54 # Mc/sec: 17673.57 // Query: T060031_1 [L=242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1473.02 // Query: T060031_2 [L=242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.47 # Mc/sec: 1473.02 // Query: T060031_3 [L=241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.48 # Mc/sec: 1436.38 // Query: T363859_1 [L=319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 552 (0.0338526); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.47 # Mc/sec: 1941.71 // Query: T363859_2 [L=319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1941.71 // Query: T363859_3 [L=318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.46 # Mc/sec: 1977.70 // Query: T288100_1 [L=3588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.0 0.0 0.019 14.3 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 1.2e-06 0.019 138 181 .. 492 535 .. 485 535 .. 0.94 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.2e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ l + r++t dp+ + + + + fi+qsa+di+ T288100_1 492 KNPAQFMTCLAATLRHFTALDPKRSKGRLILKIHFITQSAPDIK 535 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.60 # Mc/sec: 17107.76 // Query: T288100_2 [L=3587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.30s 00:00:01.55 Elapsed: 00:00:00.61 # Mc/sec: 16822.62 // Query: T288100_3 [L=3587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-05 22.9 0.0 0.00016 21.8 0.0 1.5 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 9.5e-09 0.00016 6 89 .. 692 770 .. 688 770 .. 0.84 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 9.5e-09 EEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEE.ETTEEEEE..EEEESTTSSSEEE- CS RVP 6 llkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievl.lieekfrgevsplilpelpvnllG 89 ++++ ++gk++ +l+ t A+++ ++ + P + a+ ++ Gi g+ ++ ++ ++ + l + f+ s+l++p++pv+llG T288100_3 692 RVTLTVEGKPVPFLINTEATHSTLPSFQGPVS----LASITVVGIDGQASKPLKTPQLWCqLRQYSFK--HSFLVIPTCPVPLLG 770 578999**************************....*************7777776444304444455..5************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.65 # Mc/sec: 15787.38 // Query: T094029_1 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 232 (0.0142279); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 5210.18 // Query: T094029_2 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.67 # Mc/sec: 5128.14 // Query: T094029_3 [L=1201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.09 13.0 8.7 0.19 12.0 8.7 1.5 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.19 8 50 .. 667 709 .. 666 716 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094029_3 667 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 709 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1201 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 752 (0.046118); expected 326.1 (0.02) Passed bias filter: 358 (0.0219551); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 4839.23 // Query: T222347_1 [L=2041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.69 # Mc/sec: 8462.25 // Query: T222347_2 [L=2040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.73 # Mc/sec: 7994.65 // Query: T222347_3 [L=2040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 8337.28 // Query: T088591_1 [L=1651] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1651 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1185 (0.0726726); expected 326.1 (0.02) Passed bias filter: 211 (0.01294); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.73 # Mc/sec: 6470.18 // Query: T088591_2 [L=1650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.002 17.1 0.0 0.002 17.1 0.0 2.7 3 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.7 8.3e-05 1.4 136 169 .. 763 800 .. 756 877 .. 0.58 2 ? -6.6 5.5 1 1.6e+04 67 163 .. 929 945 .. 917 952 .. 0.36 3 ! 17.1 0.0 1.3e-07 0.002 114 172 .. 991 1068 .. 959 1446 .. 0.65 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 8.3e-05 PHO4 136 lfllvrrlil....lkaalkllpllvlltvainaflil 169 ++++v+++++ +++++ ++ ++v++++++++++++ T088591_2 763 MVMVVMMIVMvmviMMMMVMVMMVMVIMMMMVMVMMVM 800 22222222111111122222222222222222222222 PP == domain 2 score: -6.6 bits; conditional E-value: 1 PHO4 67 mlaallaaavwlllatylglPvStthslvGaliGaalaaagsavkwgglvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvai 163 m+++++ ++++++v++ T088591_2 929 MVIMMVVM--------------------------------------------------------------------------------IVMVMMVMV 945 11111111................................................................................111111111 PP == domain 3 score: 17.1 bits; conditional E-value: 1.3e-07 PHO4 114 glvkivlswvlsPllggllaallfllvrrlillkaalkllpllvlltvainaflilyk...................l 172 ++ v+++v+ +l+ +++ ++++++v ++++++ + ++ ++++++v++++++i+++ + T088591_2 991 VMMVMVMMMVVMVLVMMVVMVMVMMMVVVMVMIMMVMVIMMVMMMVMVMMVMVMIVMEkiitiiidiltlrdahvlrV 1068 111122222222222222222222222222224444555555555555555555555455555544444444443330 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1481 (0.0908255); expected 326.1 (0.02) Passed bias filter: 367 (0.0225071); expected 326.1 (0.02) Passed Vit filter: 238 (0.0145959); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.79 # Mc/sec: 5975.15 // Query: T088591_3 [L=1650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 777 (0.0476512); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.74 # Mc/sec: 6378.88 // Query: T111974_1 [L=1425] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1425 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7152.07 // Query: T111974_2 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 7147.06 // Query: T111974_3 [L=1424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.65 # Mc/sec: 6267.42 // Query: T000164_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.29s 00:00:01.47 Elapsed: 00:00:00.74 # Mc/sec: 10244.86 // Query: T000164_2 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.75 # Mc/sec: 10104.45 // Query: T000164_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 10983.10 // Query: T089637_1 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 6596.74 // Query: T089637_2 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.66 # Mc/sec: 6792.30 // Query: T089637_3 [L=1567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 7230.52 // Query: T188374_1 [L=2903] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2903 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 12395.51 // Query: T188374_2 [L=2902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 12578.98 // Query: T188374_3 [L=2902] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2902 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 12578.98 // Query: T210846_1 [L=3089] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3089 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.71 # Mc/sec: 12446.63 // Query: T210846_2 [L=3088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.62 # Mc/sec: 14248.78 // Query: T210846_3 [L=3088] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3088 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.74 # Mc/sec: 11938.17 // Query: T353750_1 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.73 # Mc/sec: 6779.78 // Query: T353750_2 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-06 25.5 0.0 1.1e-05 24.5 0.0 1.4 1 AAA_9 ATP-binding dynein motor region D5 Domain annotation for each model (and alignments): >> AAA_9 ATP-binding dynein motor region D5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 0.0 6.8e-10 1.1e-05 24 127 .. 1484 1597 .. 1465 1604 .. 0.73 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 6.8e-10 ..S-EEEESSSCCHHHHHHH......HEE-TT...STTHHHHHHHHHHCT-EEEES--.SSHHCCCHHHHTTT-EE.......S.....EEEESSCE. CS AAA_9 24 skrwPlliDPqgqaikwiknkekeklkvikls...dkkflktLenairfGkpllienvgeeldpiLepvLekeiikk.....gk.....kliklgdke 108 rwPl+iDP gqa ++++ + ++ +++++ + +++ L a+r+Gkpl+++ +e+l p+++ Le + + + +++++ T353750_2 1484 DGRWPLVIDPLGQAATFLRYQDTNYVDTVNPEplrPETMWLALLGALRYGKPLVFDLREEDLFPVVQRQLEAVQERYlsllrPTdgpeySPTQFQEQ- 1580 35******************8888888998887765667778999*************999999999999843333222332013332233333333. PP EE--SS-EEEEEESSTTTH CS AAA_9 109 ieynenFrLylttklsnph 127 e+FrL+++tk + p T353750_2 1581 --RLEHFRLFFVTKVQWPP 1597 ..44679999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1089 (0.0667852); expected 326.1 (0.02) Passed bias filter: 377 (0.0231203); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.75 # Mc/sec: 6598.98 // Query: T353750_3 [L=1730] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1730 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.24s 00:00:01.17 Elapsed: 00:00:00.79 # Mc/sec: 6264.86 // Query: T138214_1 [L=7592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 250 (0.0153318); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.38u 0.42s 00:00:02.80 Elapsed: 00:00:00.87 # Mc/sec: 24964.85 // Query: T138214_2 [L=7592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7592 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.46u 0.46s 00:00:02.92 Elapsed: 00:00:00.95 # Mc/sec: 22862.55 // Query: T138214_3 [L=7591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7591 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.82u 0.47s 00:00:03.29 Elapsed: 00:00:01.01 # Mc/sec: 21501.55 // Query: T165123_1 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1145 (0.0702196); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 89 (0.00545811); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.50s 00:00:02.32 Elapsed: 00:00:00.79 # Mc/sec: 2534.91 // Query: T165123_2 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.1 46.8 2.6 7.9 0.5 10.6 12 PELOTA_1 PELOTA RNA binding domain Domain annotation for each model (and alignments): >> PELOTA_1 PELOTA RNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.1 0.084 1.4e+03 44 44 .. 153 153 .. 135 185 .. 0.54 2 ? 5.5 0.7 0.00089 15 37 73 .. 174 210 .. 154 214 .. 0.84 3 ? 6.9 0.3 0.00032 5.2 37 68 .. 196 227 .. 189 231 .. 0.87 4 ? 5.9 0.6 0.00064 10 37 69 .. 229 261 .. 222 278 .. 0.82 5 ? 1.0 0.1 0.023 3.7e+02 37 65 .. 282 309 .. 271 314 .. 0.67 6 ? 4.2 0.3 0.0022 35 36 66 .. 310 340 .. 302 347 .. 0.83 7 ? 1.2 0.2 0.019 3e+02 37 55 .. 353 371 .. 342 387 .. 0.62 8 ? 1.0 0.3 0.022 3.6e+02 37 55 .. 395 413 .. 384 429 .. 0.63 9 ? 0.3 0.2 0.036 5.9e+02 38 63 .. 417 441 .. 408 451 .. 0.62 10 ? 7.9 0.5 0.00016 2.6 37 68 .. 458 489 .. 450 499 .. 0.87 11 ? 0.3 0.2 0.035 5.8e+02 37 55 .. 501 519 .. 494 530 .. 0.71 12 ? 5.9 0.5 0.00066 11 38 69 .. 533 564 .. 525 576 .. 0.54 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.084 PELOTA_1 44 r 44 + T165123_2 153 N 153 2 PP == domain 2 score: 5.5 bits; conditional E-value: 0.00089 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevpdlpY 73 +P+++l+r ++p++ +++lL k++ +++ ++ +Y T165123_2 174 TPKHILIRLLNTPKHILIRLLNTPKHILIRHLNTPKY 210 6999999999999999999999999999988877766 PP == domain 3 score: 6.9 bits; conditional E-value: 0.00032 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveev 68 +P+++l+r+ ++p+ ++++L k++ +++ T165123_2 196 TPKHILIRHLNTPKYILIRHLSTPKHILIRHL 227 79***********************9988765 PP == domain 4 score: 5.9 bits; conditional E-value: 0.00064 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevp 69 +P+++l+r ++p+++++++L k++ +++ + T165123_2 229 TPQHILIRLLNTPKHTLIRHLNTPKHILIRHLN 261 589999999999999999999998888877654 PP == domain 5 score: 1.0 bits; conditional E-value: 0.023 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpv 65 +P+++l+r + +p++ ++++L k++ + T165123_2 282 TPKHILIRLN-TPKHILIRHLNTPKHILI 309 4677777654.666667777777766655 PP == domain 6 score: 4.2 bits; conditional E-value: 0.0022 PELOTA_1 36 RvPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r ++p++ ++++L k++ ++ T165123_2 310 NTPKHILIRLLNTPKHILIRHLNTPKHILIR 340 6799999999999999999999999988765 PP == domain 7 score: 1.2 bits; conditional E-value: 0.019 PELOTA_1 37 vPekvlvrdeeepdlahll 55 +P+++l+r+ ++p++ +++ T165123_2 353 TPKHILIRHLNTPKHILIR 371 4777777777666654443 PP == domain 8 score: 1.0 bits; conditional E-value: 0.022 PELOTA_1 37 vPekvlvrdeeepdlahll 55 +P+++l+r+ ++p++ +++ T165123_2 395 TPKHILIRHLNTPKHILIR 413 4777777777766654443 PP == domain 9 score: 0.3 bits; conditional E-value: 0.036 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgv 63 P+++l+r + +p++ ++++L k++ T165123_2 417 PKHILIRLN-TPKHILIRHLNTPKHI 441 566666543.5555566666555555 PP == domain 10 score: 7.9 bits; conditional E-value: 0.00016 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveev 68 +P+++l+r+ ++p+++++++L k++ + + T165123_2 458 TPKHILIRHLNTPKHTLIRHLNTPKHILISHL 489 79**********************99988776 PP == domain 11 score: 0.3 bits; conditional E-value: 0.035 PELOTA_1 37 vPekvlvrdeeepdlahll 55 +P+++l+r+ ++p++ +++ T165123_2 501 TPKHILIRHLNTPKHILIR 519 6999999999998876554 PP == domain 12 score: 5.9 bits; conditional E-value: 0.00066 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgvpveevp 69 P+++l+r+ ++p++ +++lL k++ +++ + T165123_2 533 PKHILIRHLNTPKHILIRLLNTPKHTLIRHLN 564 55555555555555555555555554444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.88 # Mc/sec: 2275.66 // Query: T165123_3 [L=700] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (700 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1507 (0.09242); expected 326.1 (0.02) Passed bias filter: 316 (0.0193794); expected 326.1 (0.02) Passed Vit filter: 241 (0.0147798); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.05u 0.58s 00:00:03.63 Elapsed: 00:00:01.05 # Mc/sec: 1907.22 // Query: T171405_1 [L=1832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 120 (0.00735925); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.72 # Mc/sec: 7279.22 // Query: T171405_2 [L=1832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-20 73.2 0.0 3.1e-20 72.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 4.8e-17 62.3 0.0 9.5e-17 61.4 0.0 1.4 1 RNase_H RNase H 1.6e-16 60.4 0.0 3.8e-16 59.2 0.0 1.7 1 rve Integrase core domain 8.9e-09 35.4 1.1 2.5e-08 33.9 1.1 1.9 1 zf-H2C2 His(2)-Cys(2) zinc finger Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.5 0.0 7.7e-24 3.1e-20 1 204 [. 115 274 .. 115 286 .. 0.94 Alignments for each domain: == domain 1 score: 72.5 bits; conditional E-value: 7.7e-24 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 +pK+g+++yRp+ d++++n++++ l++ p++ + ++ ++ +++ lDlk+aF+s++l+ + +kl+af+ +++ T171405_2 115 VPKPGTKDYRPV----QDLRLVNQATVT---------LHPTVPNLYTLLGL------------LPAEDSWFTCLDLKDAFFSIRLAPERQKLFAFQWEDP 189 69*********7....7***********.........9*******999555............56788******************************88 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEG CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinp 200 ++ +++y+++ lpq +++SP++f ++ + l+++ +r g++ll+Y+DD+l+ + + + + +a+ ++l+++g+k+++ T171405_2 190 -------------------ESGVTTQYTWTQLPQRFKNSPTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSK 270 ...................34569**************************************************************************** PP GG-E CS RVT_1 201 eKtk 204 +K++ T171405_2 271 KKSS 274 **97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.4 0.0 2.3e-20 9.5e-17 5 142 .. 527 668 .. 524 669 .. 0.80 Alignments for each domain: == domain 1 score: 61.4 bits; conditional E-value: 2.3e-20 EEEEEEEEECT.TTEEEEEE.EECTT...EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-..HHHHHHHHCCCHHHHHTTSSSETTSSBH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykeg.arnisapleeaqtnnraELsAvieaLk.alksdekvniytDS..kYvvkgitqwvhrwkknawkttseqkpv 98 +Y+DGs++ n ++e++ag+ v+ ++ a+ +s+ ++ ++ ++aEL+A+i aL+ + ++++vniytDS +++ ++ k+++ +s +k++ T171405_2 527 ELYVDGSSFVNpQEERCAGYaVVTLDTvAEARSF--PQGTSTQKAELIALIRALElS--EGKTVNIYTDS*yVFLTLQVHGA--LCKEKGL-LNSGGKDI 619 68*********6667799*977776632334444..467****************55..9*********9987777756653..3355555.67788899 PP TT.HHHHHHHHHCHCSSEEEEEE-SCC..SSS..CHHHHHHHHHHHHHH CS RNase_H 99 kn.kelaellkelakkkkvqlkhvkgH..aGd..pkgNemaDrlAkeaa 142 k +e+ +ll+++ k++kv + h+ gH a+ + gN D A++aa T171405_2 620 KYqQEILQLLEAVWKPHKVAVIHCGGHq*ASTlvGLGNSCTDLEAQKAA 668 9889***********************8855557679*****9999987 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 9.4e-20 3.8e-16 3 107 .. 792 892 .. 790 893 .. 0.97 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 9.4e-20 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 +p e +qvD+t+++ + gg++yllv + ++s+ + a+++++e +a++v+++l r + ++g p+r+ sDng +++ +++ ++ lgi+++++++++p T171405_2 792 APFEDLQVDFTEMP--KCGGNKYLLVLVCTYSGQVEAYPTRTE-KAHEVTRVLLRDLIPRFGL-PLRIGSDNGLVFVADLVQKTAKVLGITWKLHAAYQP 887 689999********..9999***********************.******************9.************************************ PP rve 103 qdnGk 107 q+ Gk T171405_2 888 QSSGK 892 ***98 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.9 1.1 6.1e-12 2.5e-08 1 39 [] 734 772 .. 734 772 .. 0.99 Alignments for each domain: == domain 1 score: 33.9 bits; conditional E-value: 6.1e-12 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 Hk+tHlG++ l++ll ++++ ++++++++V+++C++C+ T171405_2 734 HKTTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCR 772 **************************************5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 261 (0.0160064); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.65 # Mc/sec: 8063.14 // Query: T171405_3 [L=1832] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1832 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.69 # Mc/sec: 7595.71 // Query: T164821_1 [L=3255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.71 # Mc/sec: 13115.50 // Query: T164821_2 [L=3255] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3255 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.27s 00:00:01.49 Elapsed: 00:00:00.75 # Mc/sec: 12416.00 // Query: T164821_3 [L=3254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00097 19.6 0.0 0.0017 18.8 0.0 1.3 1 MgtE_N MgtE intracellular N domain Domain annotation for each model (and alignments): >> MgtE_N MgtE intracellular N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 1e-07 0.0017 8 91 .. 2386 2469 .. 2385 2475 .. 0.89 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 1e-07 HCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHHHH CS MgtE_N 8 elleelpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeere 91 ++l+++++++ +++l+ ++ +++ +l+++d++ + ++++++ ++ +++l ++d ++ +l++++ + +++l+ +d + + T164821_3 2386 HILKDINYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQRHKHILKDIDYQGHKHILKDIDYRRHK 2469 689999999999999999999999999999999999999999999999999999999999999999999999999999877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 315 (0.019318); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.78 # Mc/sec: 11934.80 // Query: T381591_1 [L=4541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.36s 00:00:01.90 Elapsed: 00:00:00.79 # Mc/sec: 16444.34 // Query: T381591_2 [L=4540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:00.78 # Mc/sec: 16651.50 // Query: T381591_3 [L=4540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.69 # Mc/sec: 18823.43 // Query: T094731_1 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.50 # Mc/sec: 1344.59 // Query: T094731_2 [L=235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (235 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.59 # Mc/sec: 1139.48 // Query: T094731_3 [L=234] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (234 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.49 # Mc/sec: 1366.19 // Query: T236132_1 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.001 17.9 0.0 0.0016 17.2 0.0 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 9.8e-08 0.0016 266 295 .. 585 614 .. 577 617 .. 0.92 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 9.8e-08 HHHHHHS-EEETTEEEEEEE---HHHHHHH CS Transposase_22 266 kavrekGrvtlkGkPirltadlsaetlkar 295 ka+rek v++kG ir+ ad+s+e+l++r T236132_1 585 KAAREKQLVSYKGASIRFLADFSSEALETR 614 8**************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.49 # Mc/sec: 9394.03 // Query: T236132_2 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 9206.15 // Query: T236132_3 [L=1609] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1609 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 362 (0.0222004); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 9025.64 // Query: T067531_1 [L=1852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.49 # Mc/sec: 10812.77 // Query: T067531_2 [L=1852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.51 # Mc/sec: 10388.74 // Query: T067531_3 [L=1852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 9811.59 // Query: T327800_1 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 106 (0.00650067); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 18360.40 // Query: T327800_2 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.26s 00:00:01.16 Elapsed: 00:00:00.50 # Mc/sec: 20563.65 // Query: T327800_3 [L=3594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3594 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.51 # Mc/sec: 20160.44 // Query: T138737_1 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 328 (0.0201153); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49 # Mc/sec: 5441.42 // Query: T138737_2 [L=932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 5441.42 // Query: T138737_3 [L=931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.45 # Mc/sec: 5918.74 // Query: T316373_1 [L=4073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.29s 00:00:01.38 Elapsed: 00:00:00.53 # Mc/sec: 21985.21 // Query: T316373_2 [L=4073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.53 # Mc/sec: 21985.21 // Query: T316373_3 [L=4073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.51 # Mc/sec: 22847.37 // Query: T123584_1 [L=4187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.27s 00:00:01.32 Elapsed: 00:00:00.53 # Mc/sec: 22600.56 // Query: T123584_2 [L=4187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.8 0.4 27 4.9 0.0 4.8 5 Imm35 Immunity protein 35 Domain annotation for each model (and alignments): >> Imm35 Immunity protein 35 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.12 1.9e+03 6 38 .. 140 168 .. 138 169 .. 0.87 2 ? -0.6 0.0 0.085 1.4e+03 22 42 .. 199 219 .. 191 220 .. 0.81 3 ? 2.1 0.0 0.012 2e+02 6 42 .. 436 468 .. 424 470 .. 0.81 4 ? -0.7 0.0 0.093 1.5e+03 9 42 .. 867 896 .. 853 899 .. 0.78 5 ? 4.9 0.0 0.0017 27 5 42 .. 946 979 .. 942 985 .. 0.90 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.12 Imm35 6 kaeewLrraygpdralrvapekvdelergWlfa 38 +a ++Lr+a++ rv+ + +++gW+ + T123584_2 140 RADDFLRDADEE----RVDDSFRTQMRDGWMIP 168 788999999995....79************875 PP == domain 2 score: -0.6 bits; conditional E-value: 0.085 Imm35 22 rvapekvdelergWlfaynte 42 rv+ + + +++gW+ ++ t+ T123584_2 199 RVDDSFQTQMRDGWMTSFRTQ 219 8999************99985 PP == domain 3 score: 2.1 bits; conditional E-value: 0.012 Imm35 6 kaeewLrraygpdralrvapekvdelergWlfaynte 42 +a ++L +a+++ rv+ + +++gW+ +++t+ T123584_2 436 RADDFLPDADEG----RVDDSFRTQMRDGWMTSFQTQ 468 455566666654....89*****************96 PP == domain 4 score: -0.7 bits; conditional E-value: 0.093 Imm35 9 ewLrraygpdralrvapekvdelergWlfaynte 42 ++L +a+++ r + + +++gW+ +++t+ T123584_2 867 DFLPDADEG----RADDSFRTQMRDGWMTSFQTQ 896 555555553....5688889999*********96 PP == domain 5 score: 4.9 bits; conditional E-value: 0.0017 Imm35 5 akaeewLrraygpdralrvapekvdelergWlfaynte 42 ++a ++Lr+a++ rv+ + +++gW+ +++t+ T123584_2 946 ERADDFLRDADEE----RVDDSFRTQMRDGWMTSFQTQ 979 5899999999995....79*****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.53 # Mc/sec: 22600.56 // Query: T123584_3 [L=4186] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4186 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.26s 00:00:01.39 Elapsed: 00:00:00.51 # Mc/sec: 23481.24 // Query: T183231_1 [L=5676] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5676 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.56 # Mc/sec: 28996.56 // Query: T183231_2 [L=5675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.56 # Mc/sec: 28991.45 // Query: T183231_3 [L=5675] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5675 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 149 (0.00913774); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.56 # Mc/sec: 28991.45 // Query: T383211_1 [L=4899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-10 38.7 0.0 1.1e-09 38.1 0.0 1.2 1 GATase_7 Glutamine amidotransferase domain 2.6e-05 24.3 0.0 4.2e-05 23.6 0.0 1.3 1 GATase_6 Glutamine amidotransferase domain Domain annotation for each model (and alignments): >> GATase_7 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.0 1.4e-13 1.1e-09 42 123 .. 90 172 .. 87 173 .. 0.90 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 1.4e-13 GATase_7 42 Leakghrf..rtksDtevllallealewgeealerlnGmfAfaiwdeeekrlllaRDrl.GikPLyygedkgdallfaSelkall 123 L +++++f +tk D e++l+l+++ ++e+++ l+G fAf+++d+++k++ l RD G++PL+ + +++ l++ Se kal+ T383211_1 90 LVQHQFEFeyQTKVDGEIILHLYDK-GGIEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGFLAVCSEAKALR 172 555555444499************9.8******************************.************9779*********96 PP >> GATase_6 Glutamine amidotransferase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 5.2e-09 4.2e-05 66 129 .. 97 161 .. 85 167 .. 0.81 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 5.2e-09 GATase_6 66 lafrsrsDtevllalleelG.eevlerlrGmfafaiwdkrentlilardrl.gvkplyyavdesgl 129 + ++++D e++l+l+++ G e+++ l+G+faf++ d++++++ l rd + gv+pl+ av+e+g+ T383211_1 97 FEYQTKVDGEIILHLYDKGGiEQTICMLDGVFAFVLLDSANKKVSLDRD-T*GVRPLFKAVTEDGF 161 446789**********9999**************************955.6778888888886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.53 # Mc/sec: 26443.79 // Query: T383211_2 [L=4899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4899 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.28s 00:00:01.48 Elapsed: 00:00:00.53 # Mc/sec: 26443.79 // Query: T383211_3 [L=4898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.28s 00:00:01.44 Elapsed: 00:00:00.53 # Mc/sec: 26438.39 // Query: T260635_1 [L=3635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.3 8.0 7.6 5.5 6.8 7.6 1.6 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 7.6 0.00034 5.5 41 74 .. 525 559 .. 517 571 .. 0.70 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.00034 Lamprin 41 gglgygglgygglgvaglgvagl.gygglgypgaa 74 g lg+ glg+ glg+aglg ag g+ g pg+a T260635_1 525 GRLGWAGLGWAGLGWAGLGGAGReGWRGRRGPGSA 559 55778888888888888877774366666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.97u 0.25s 00:00:01.22 Elapsed: 00:00:00.49 # Mc/sec: 21222.69 // Query: T260635_2 [L=3635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3635 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.54 # Mc/sec: 19257.62 // Query: T260635_3 [L=3634] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3634 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.53 # Mc/sec: 19615.58 // Query: T235382_1 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 504 (0.0309089); expected 326.1 (0.02) Passed bias filter: 352 (0.0215871); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.49 # Mc/sec: 7373.94 // Query: T235382_2 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.47 # Mc/sec: 7681.63 // Query: T235382_3 [L=1262] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1262 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.47 # Mc/sec: 7681.63 // Query: T028432_1 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 320 (0.0196247); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 7770.01 // Query: T028432_2 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 8093.76 // Query: T028432_3 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 8093.76 // Query: T052870_1 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.46 # Mc/sec: 6144.57 // Query: T052870_2 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.47 # Mc/sec: 6013.83 // Query: T052870_3 [L=987] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (987 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.48 # Mc/sec: 5882.58 // Query: T250799_1 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 8803.80 // Query: T250799_2 [L=1631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.60 # Mc/sec: 7776.69 // Query: T250799_3 [L=1630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.75 # Mc/sec: 6217.54 // Query: T138152_1 [L=205] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (205 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 888.59 // Query: T138152_2 [L=204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.65 # Mc/sec: 897.86 // Query: T138152_3 [L=204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.62 # Mc/sec: 941.31 // Query: T092299_1 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.66 # Mc/sec: 1057.64 // Query: T092299_2 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.65 # Mc/sec: 1073.91 // Query: T092299_3 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 250 (0.0153318); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.64 # Mc/sec: 1090.69 // Query: T354542_1 [L=573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (573 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.59 # Mc/sec: 2778.40 // Query: T354542_2 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-47 160.7 0.2 4.3e-47 159.9 0.2 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.6e-44 149.8 7.9 1.6e-44 149.8 7.9 1.9 2 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.9 0.2 5.3e-51 4.3e-47 1 136 [. 123 258 .. 123 282 .. 0.86 Alignments for each domain: == domain 1 score: 159.9 bits; conditional E-value: 5.3e-51 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqd 97 avtw+dnpievyvn+s wvpgp+ddr pa+peeegmminisigy+yppiclg+apgclmp+ qnwlvevptvs s+ftyh + p + l T354542_2 123 AVTWIDNPIEVYVNNSAWVPGPTDDRGPAQPEEEGMMINISIGYHYPPICLGKAPGCLMPTNQNWLVEVPTVSATSKFTYHSLQVYPAAPERQRLAR 219 79*******************************************************************************9999888888888887 PP HERV-K_env_2 98 fsyqrslkfrpkgkpcpkeipkeskntevlvweecvans 136 ++ f k + +e + s v v e + +s T354542_2 220 TDHDDDGGFVKKKRGICREKRERSDCYCVYVEREDIRDS 258 777777777777777777777777777777766666665 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.1 0.25 2e+03 10 24 .. 7 21 .. 4 25 .. 0.83 2 ! 149.8 7.9 1.9e-48 1.6e-44 4 87 .] 30 113 .. 29 113 .. 0.98 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.25 HERV-K_REC 10 nkmvtseeqmklpst 24 nk + se q+k+p T354542_2 7 NKPIPSEMQIKVPPQ 21 89999*******975 PP == domain 2 score: 149.8 bits; conditional E-value: 1.9e-48 HERV-K_REC 4 plthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 th++nkmv seeqmklpstkkaepptwaqlkkltqla k l+nt+vtqtpe mllaalmivsmvv+l+m+a++++a+++y+a T354542_2 30 SSTHQVNKMVISEEQMKLPSTKKAEPPTWAQLKKLTQLAEKSLKNTRVTQTPENMLLAALMIVSMVVSLPMSAGAATANYTYWA 113 569********************************************************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 214 (0.013124); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.72 # Mc/sec: 2272.77 // Query: T354542_3 [L=572] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (572 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.64 # Mc/sec: 2556.87 // Query: T353483_1 [L=1571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1571 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1305 (0.0800319); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:00.66 # Mc/sec: 6809.64 // Query: T353483_2 [L=1570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1459 (0.0894763); expected 326.1 (0.02) Passed bias filter: 315 (0.019318); expected 326.1 (0.02) Passed Vit filter: 155 (0.0095057); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.34s 00:00:01.99 Elapsed: 00:00:00.77 # Mc/sec: 5833.12 // Query: T353483_3 [L=1570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1289 (0.0790507); expected 326.1 (0.02) Passed bias filter: 231 (0.0141666); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.65 # Mc/sec: 6910.00 // Query: T106422_1 [L=1802] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1802 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 7160.02 // Query: T106422_2 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.69 # Mc/sec: 7467.18 // Query: T106422_3 [L=1801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 107 (0.006562); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 7576.99 // Query: T375996_1 [L=1352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.72 # Mc/sec: 5372.00 // Query: T375996_2 [L=1352] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1352 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.72 # Mc/sec: 5372.00 // Query: T375996_3 [L=1351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.66 # Mc/sec: 5856.03 // Query: T106778_1 [L=1149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.9 8.5 4.0 1.2 9.7 0.2 2.1 2 LEA_1 Late embryogenesis abundant (LEA) group 1 Domain annotation for each model (and alignments): >> LEA_1 Late embryogenesis abundant (LEA) group 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.2 7.3e-05 1.2 5 44 .. 51 89 .. 48 93 .. 0.81 2 ? -1.1 0.6 0.17 2.8e+03 45 67 .. 120 142 .. 106 145 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 7.3e-05 LEA_1 5 KekakdvaasakakmektkAkvqEKaekatArdpaekelA 44 +e ++ v+ s+ a+ +A +EKa ka Ar+pa+++ A T106778_1 51 QEPTERVGGSRMAGCR-SRALPHEKAAKAPARNPAQRRWA 89 5556666777777777.89999***************998 PP == domain 2 score: -1.1 bits; conditional E-value: 0.17 LEA_1 45 eerkkareaeAemelhqakaeha 67 ++ar+a+A el+ a++++a T106778_1 120 APSARARQADAHPELQLARKRRA 142 55678999999999999988876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.72 # Mc/sec: 4565.41 // Query: T106778_2 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.79 # Mc/sec: 4157.26 // Query: T106778_3 [L=1148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 5131.61 // Query: T156474_1 [L=2192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.38s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 8709.64 // Query: T156474_2 [L=2191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 9217.76 // Query: T156474_3 [L=2191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 10109.80 // Query: T337116_1 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.65 # Mc/sec: 10483.84 // Query: T337116_2 [L=2382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.67 # Mc/sec: 10170.89 // Query: T337116_3 [L=2381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.51 # Mc/sec: 13356.15 // Query: T183187_1 [L=376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2138 (0.131117); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 49 (0.00300503); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 1581.87 // Query: T183187_2 [L=376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2408 (0.147676); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.52s 00:00:01.95 Elapsed: 00:00:00.89 # Mc/sec: 1208.62 // Query: T183187_3 [L=375] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (375 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2025 (0.124187); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 68 (0.00417024); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.79 # Mc/sec: 1357.99 // Query: T300734_1 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-09 36.5 0.7 7.2e-09 35.5 0.7 1.5 1 Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail regi 2.1e-06 27.6 4.4 4.9e-06 26.4 4.4 1.6 1 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Epiglycanin_C Mucin, catalytic, TM and cytoplasmic tail region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.7 8.8e-13 7.2e-09 2 62 .. 503 564 .. 502 567 .. 0.86 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 8.8e-13 Epiglycanin_C 2 tpvsevkPsGslkPWeiiLitLvavvvavGllvgLsfCvrnllslrnl..adtavyrPhghnl 62 t+v vkP+ l P iiLi+L+a v+v l+vgL f v++++ +l + +y+Ph ++ T300734_1 503 TSVTAVKPTRLLTPMGIILISLAATTVTVVLFVGLGFIVKECFL-PPLnpSTRVIYHPHVMDY 564 78999************************************998.5551145579****8775 PP >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 4.4 6e-10 4.9e-06 10 82 .. 418 490 .. 405 497 .. 0.54 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 6e-10 Mucin-like 10 paspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsss 82 p ++++s+++ +r++++s+ta + ++ +s++ +p ++++s ta + + +s+ta+p t ++s ++ p ++++ T300734_1 418 PGTTKDSITADPRTTEDSVTADPGTTKHSITVDPGTTEDSVTADPGTTKHSITADPGTTEDSVTADPGTTEDE 490 4445555555555555555555555555555555555555555555555555555555555555555444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5551.11 // Query: T300734_2 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.72 # Mc/sec: 4005.16 // Query: T300734_3 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.6 5.1 0.026 14.5 5.1 1.6 1 Mucin-like Mucin-like 6.5 5.7 8.3 9.9 5.1 8.3 1.2 1 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 5.1 3.2e-06 0.026 7 87 .. 325 405 .. 316 409 .. 0.85 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 3.2e-06 Mucin-like 7 tqppaspsssygepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaapsssytapp 87 + ++ + ++++ r++++ +ta + ++++s +++p +++++ t + + ++s+ta+p t + ++ p ++++s ta p T300734_3 325 PKDSRIRENDVTADGRTTEDHITADPGTTEDSVTADPGTTEDNVTVDPGTTEGSVTADPATTKDYVSADPGTTKDSVTADP 405 455566678899999999999999999999999999999999999999999999999999999999999999999999887 PP >> Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 8.3 0.0012 9.9 242 305 .. 347 405 .. 320 420 .. 0.62 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0012 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Herpes_LMP1 242 lgapgggpdngpqdpdntddngpqdpdntddngphdplpqdpdntddngpqdpdntddngphdp 305 pg d dp t+dn dp t+ ++ dp t d dp t+d dp T300734_3 347 TADPGTTEDSVTADPGTTEDNVTVDPGTTEG-----SVTADPATTKDYVSADPGTTKDSVTADP 405 2334444444444444444444444444432.....2466777777777777777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56 # Mc/sec: 5149.49 // Query: T359857_1 [L=5040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.021 14.4 0.0 2.9 7.6 0.0 3.7 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.0 0.51 8.3e+03 10 20 .. 352 362 .. 351 362 .. 0.77 2 ? -1.3 0.0 0.12 1.9e+03 13 26 .. 433 446 .. 424 446 .. 0.81 3 ? 7.6 0.0 0.00018 2.9 7 31 .. 536 560 .. 536 560 .. 0.93 4 ? 1.7 0.0 0.013 2.1e+02 19 33 .. 1140 1154 .. 1140 1156 .. 0.68 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.51 E-TTEEEETTE CS Hexapep 10 IgpfaviggnV 20 ++p a++g+nV T359857_1 352 LRPDAYLGPNV 362 57888888887 PP == domain 2 score: -1.3 bits; conditional E-value: 0.12 TEEEETTEEE-TTE CS Hexapep 13 faviggnVkIGdnv 26 +++++++V +G+++ T359857_1 433 GVHLRPDVCLGPDC 446 79999999999998 PP == domain 3 score: 7.6 bits; conditional E-value: 0.00018 TEEE-TTEEEETTEEE-TTEEEETT CS Hexapep 7 nvlIgpfaviggnVkIGdnvkIgag 31 +v+++p +++ ++V++G +v++ +g T359857_1 536 DVHLWPRVHLVPDVHLGHGVHLRPG 560 6899*****************9986 PP == domain 4 score: 1.7 bits; conditional E-value: 0.013 TEEE-TTEEEETTEE CS Hexapep 19 nVkIGdnvkIgagvv 33 +V++G++v I agv T359857_1 1140 GVHLGPDVQIRAGVL 1154 577777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.69u 0.37s 00:00:02.06 Elapsed: 00:00:00.81 # Mc/sec: 17800.72 // Query: T359857_2 [L=5040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.6 0.1 62 3.4 0.0 4.9 4 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.19 3e+03 6 20 .. 480 494 .. 479 494 .. 0.56 2 ? 3.4 0.0 0.0038 62 4 24 .. 740 760 .. 737 768 .. 0.63 3 ? 2.5 0.1 0.0072 1.2e+02 13 29 .. 877 893 .. 875 894 .. 0.83 4 ? 1.3 0.0 0.017 2.8e+02 10 32 .. 1855 1877 .. 1842 1881 .. 0.52 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.19 TTEEE-TTEEEETTE CS Hexapep 6 snvlIgpfaviggnV 20 s+v++gp +++g+ + T359857_2 480 SGVQLGPAVHLGPWC 494 556666666666654 PP == domain 2 score: 3.4 bits; conditional E-value: 0.0038 E-TTEEE-TTEEEETTEEE-T CS Hexapep 4 IGsnvlIgpfaviggnVkIGd 24 + +v++gp++++++++ + T359857_2 740 LRPDVQLGPGVHLRHDAYLKL 760 456777888888888776655 PP == domain 3 score: 2.5 bits; conditional E-value: 0.0072 TEEEETTEEE-TTEEEE CS Hexapep 13 faviggnVkIGdnvkIg 29 +++g+ V+IG++v ++ T359857_2 877 SVYLGSSVHIGSDVNLE 893 689999******99875 PP == domain 4 score: 1.3 bits; conditional E-value: 0.017 E-TTEEEETTEEE-TTEEEETTE CS Hexapep 10 IgpfaviggnVkIGdnvkIgagv 32 +gp ++ g+ V++G +v +g+ v T359857_2 1855 LGPDVYSGSAVHLGQGVFLGPRV 1877 34444445555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.71u 0.38s 00:00:02.09 Elapsed: 00:00:00.79 # Mc/sec: 18251.37 // Query: T359857_3 [L=5039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.053 13.1 0.0 16 5.3 0.0 3.4 3 Hexapep Bacterial transferase hexapeptide (six repeats) Domain annotation for each model (and alignments): >> Hexapep Bacterial transferase hexapeptide (six repeats) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.14 2.2e+03 10 26 .. 807 823 .. 804 824 .. 0.62 2 ? 5.3 0.0 0.00096 16 14 32 .. 902 920 .. 899 921 .. 0.62 3 ? 3.6 0.0 0.0034 55 12 32 .. 1120 1140 .. 1117 1140 .. 0.89 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.14 E-TTEEEETTEEE-TTE CS Hexapep 10 IgpfaviggnVkIGdnv 26 ++p++ +g+ V +G++v T359857_3 807 LWPNVLLGSSVLLGPDV 823 56666666666666666 PP == domain 2 score: 5.3 bits; conditional E-value: 0.00096 EEEETTEEE-TTEEEETTE CS Hexapep 14 aviggnVkIGdnvkIgagv 32 +++g++V +G++v +++g+ T359857_3 902 VQLGPDVRLGPGVNLEHGC 920 5666666666666666665 PP == domain 3 score: 3.6 bits; conditional E-value: 0.0034 TTEEEETTEEE-TTEEEETTE CS Hexapep 12 pfaviggnVkIGdnvkIgagv 32 +++++ ++V +G++v+ ++g+ T359857_3 1120 AGVHLESHVYLGPDVHMEPGS 1140 799************999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.66 # Mc/sec: 21842.00 // Query: T138937_1 [L=778] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-07 30.8 10.1 10 6.0 0.1 9.0 14 LAMTOR5 Ragulator complex protein LAMTOR5 0.0052 15.9 0.0 77 2.2 0.0 5.0 8 DUF3187 Protein of unknown function (DUF3187) ------ inclusion threshold ------ 1.2 9.2 12.1 96 3.0 0.1 6.6 10 DUF4633 Domain of unknown function (DUF4633) Domain annotation for each model (and alignments): >> LAMTOR5 Ragulator complex protein LAMTOR5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.1 0.0 0.0072 39 23 47 .. 95 127 .. 79 131 .. 0.61 2 ! 5.6 0.1 0.0024 13 11 49 .. 105 151 .. 102 153 .. 0.80 3 ? 2.0 0.0 0.034 1.8e+02 19 33 .. 135 149 .. 124 178 .. 0.69 4 ? 0.9 0.1 0.074 4e+02 24 43 .. 162 189 .. 146 199 .. 0.58 5 ? 1.9 0.1 0.037 2e+02 23 42 .. 183 210 .. 168 219 .. 0.68 6 ? 1.2 0.1 0.059 3.2e+02 23 30 .. 227 234 .. 193 238 .. 0.56 7 ? 3.6 0.1 0.01 56 24 49 .. 228 261 .. 216 263 .. 0.79 8 ! 4.0 0.0 0.0078 42 24 50 .. 250 284 .. 239 287 .. 0.82 9 ? 2.8 0.1 0.018 99 23 41 .. 271 297 .. 255 307 .. 0.58 10 ? 2.5 0.2 0.023 1.3e+02 13 43 .. 283 321 .. 278 328 .. 0.57 11 ? 3.3 0.1 0.013 73 24 48 .. 316 348 .. 306 350 .. 0.77 12 ! 3.7 0.0 0.0099 54 24 49 .. 338 371 .. 329 375 .. 0.83 13 ? 2.7 0.0 0.02 1.1e+02 9 31 .. 367 389 .. 352 391 .. 0.76 14 ! 6.0 0.1 0.0018 10 10 49 .. 368 415 .. 365 419 .. 0.84 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.0072 LAMTOR5 23 caDeqGLcl........gsrGtlsnksagiita 47 +D++GLcl s+G +++++ ++++ T138937_1 95 FTDSHGLCLstllrrptVSAGRFTDSHGLCLSR 127 567777777666555555666665555555555 PP == domain 2 score: 5.6 bits; conditional E-value: 0.0024 LAMTOR5 11 evmskegvvGvlcaDeqGLcl........gsrGtlsnksagiitall 49 ++ + v++ +D++GLcl +s+G +++++ +++ ll T138937_1 105 TLLRRPTVSAGRFTDSHGLCLsrllrrptASAGRFTDSHGLCLSTLL 151 56677888888899******988888888888988888888888776 PP == domain 3 score: 2.0 bits; conditional E-value: 0.034 LAMTOR5 19 vGvlcaDeqGLclgs 33 ++ +D++GLcl + T138937_1 135 SAGRFTDSHGLCLST 149 555678999999953 PP == domain 4 score: 0.9 bits; conditional E-value: 0.074 LAMTOR5 24 aDeqGLcl........gsrGtlsnksag 43 +D+ GLcl +s+G +++++ T138937_1 162 TDSPGLCLwgllrrpaASAGRFTDSHGL 189 5666666644444444444444444443 PP == domain 5 score: 1.9 bits; conditional E-value: 0.037 LAMTOR5 23 caDeqGLcl........gsrGtlsnksa 42 +D++GLcl +s+G +++++ T138937_1 183 FTDSHGLCLwgllrrpaASAGRFTDSHG 210 5788888886666666666665555554 PP == domain 6 score: 1.2 bits; conditional E-value: 0.059 LAMTOR5 23 caDeqGLc 30 +D++GLc T138937_1 227 FTDSHGLC 234 34555555 PP == domain 7 score: 3.6 bits; conditional E-value: 0.01 LAMTOR5 24 aDeqGLcl........gsrGtlsnksagiitall 49 +D++GLcl +s+G +++++ ++++ll T138937_1 228 TDSHGLCLstllrwptASAGRFTDSHGLCLSRLL 261 8999999988888888888888888887777776 PP == domain 8 score: 4.0 bits; conditional E-value: 0.0078 LAMTOR5 24 aDeqGLcl........gsrGtlsnksagiitallk 50 +D++GLcl +s+G +++++ ++++ll+ T138937_1 250 TDSHGLCLsrllrrptASAGRFTDSHGLCLSRLLQ 284 79999999888888888888888888888888775 PP == domain 9 score: 2.8 bits; conditional E-value: 0.018 LAMTOR5 23 caDeqGLcl........gsrGtlsnks 41 +D++GLcl +s+G ++++ T138937_1 271 FTDSHGLCLsrllqrptASAGRFTDSH 297 567777777444444444444444444 PP == domain 10 score: 2.5 bits; conditional E-value: 0.023 LAMTOR5 13 mskegvvGvlcaDeqGLcl........gsrGtlsnksag 43 + + +++ +D++GLcl + +G +++++ T138937_1 283 LQRPTASAGRFTDSHGLCLwgllrrptANAGRFTDSHGL 321 566666666678888888855555444444444444444 PP == domain 11 score: 3.3 bits; conditional E-value: 0.013 LAMTOR5 24 aDeqGLcl........gsrGtlsnksagiital 48 +D++GLcl +s+G +++++ ++++l T138937_1 316 TDSHGLCLstllrwptASAGRFTDSHGLCLSRL 348 799999997777777777777777777777766 PP == domain 12 score: 3.7 bits; conditional E-value: 0.0099 LAMTOR5 24 aDeqGLcl........gsrGtlsnksagiitall 49 +D++GLcl +s+G +++++ ++++ll T138937_1 338 TDSHGLCLsrllrwptASAGRFTDSHGLCLSRLL 371 8999999988888888888888888888888876 PP == domain 13 score: 2.7 bits; conditional E-value: 0.02 LAMTOR5 9 ldevmskegvvGvlcaDeqGLcl 31 l+++ + v++ +D++GLcl T138937_1 367 LSRLLRRPTVSTGRFTDSHGLCL 389 45556677777777888888887 PP == domain 14 score: 6.0 bits; conditional E-value: 0.0018 LAMTOR5 10 devmskegvvGvlcaDeqGLcl........gsrGtlsnksagiitall 49 +++ + v++ +D++GLcl +s+G +++++ +++ ll T138937_1 368 SRLLRRPTVSTGRFTDSHGLCLwgllrrptASAGRFTDSHGLCLSMLL 415 56677889999999********99999999999999999988888776 PP >> DUF3187 Protein of unknown function (DUF3187) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 0.032 1.7e+02 167 195 .. 94 122 .. 76 135 .. 0.86 2 ? -2.2 0.0 0.31 1.7e+03 168 193 .. 139 164 .. 135 167 .. 0.90 3 ? 2.1 0.0 0.015 80 168 204 .. 205 241 .. 187 250 .. 0.86 4 ? -1.6 0.0 0.2 1.1e+03 168 196 .. 249 277 .. 243 285 .. 0.88 5 ? 2.2 0.0 0.014 77 167 204 .. 292 329 .. 279 338 .. 0.85 6 ? 1.4 0.0 0.025 1.4e+02 167 199 .. 314 346 .. 300 360 .. 0.83 7 ? -0.5 0.0 0.091 4.9e+02 167 195 .. 336 364 .. 327 372 .. 0.88 8 ? 0.1 0.0 0.062 3.4e+02 167 199 .. 380 412 .. 364 419 .. 0.87 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.032 DUF3187 167 tesekhglslggslkyptvdagklegsgs 195 ++++ hgl l+ l+ ptv ag++++s + T138937_1 94 RFTDSHGLCLSTLLRRPTVSAGRFTDSHG 122 578999******************99965 PP == domain 2 score: -2.2 bits; conditional E-value: 0.31 DUF3187 168 esekhglslggslkyptvdagklegs 193 +++ hgl l+ l+ pt ag++++s T138937_1 139 FTDSHGLCLSTLLRRPTASAGRFTDS 164 6899*******************987 PP == domain 3 score: 2.1 bits; conditional E-value: 0.015 DUF3187 168 esekhglslggslkyptvdagklegsgsfdlgvqlny 204 +++ hgl l g l+ pt +ag++++s ++ l+ l + T138937_1 205 FTDSHGLCLWGLLRRPTANAGRFTDSHGLCLSTLLRW 241 7899*********************988877777766 PP == domain 4 score: -1.6 bits; conditional E-value: 0.2 DUF3187 168 esekhglslggslkyptvdagklegsgsf 196 +++ hgl l+ l+ pt ag++++s ++ T138937_1 249 FTDSHGLCLSRLLRRPTASAGRFTDSHGL 277 6899********************99665 PP == domain 5 score: 2.2 bits; conditional E-value: 0.014 DUF3187 167 tesekhglslggslkyptvdagklegsgsfdlgvqlny 204 ++++ hgl l g l+ pt +ag++++s ++ l+ l + T138937_1 292 RFTDSHGLCLWGLLRRPTANAGRFTDSHGLCLSTLLRW 329 57899*********************988887777766 PP == domain 6 score: 1.4 bits; conditional E-value: 0.025 DUF3187 167 tesekhglslggslkyptvdagklegsgsfdlg 199 ++++ hgl l+ l+ pt ag++++s ++ l+ T138937_1 314 RFTDSHGLCLSTLLRWPTASAGRFTDSHGLCLS 346 578999******************999776665 PP == domain 7 score: -0.5 bits; conditional E-value: 0.091 DUF3187 167 tesekhglslggslkyptvdagklegsgs 195 ++++ hgl l+ l+ pt ag++++s + T138937_1 336 RFTDSHGLCLSRLLRWPTASAGRFTDSHG 364 57899********************9966 PP == domain 8 score: 0.1 bits; conditional E-value: 0.062 DUF3187 167 tesekhglslggslkyptvdagklegsgsfdlg 199 ++++ hgl l g l+ pt ag++++s ++ l+ T138937_1 380 RFTDSHGLCLWGLLRRPTASAGRFTDSHGLCLS 412 67899*********************9776665 PP >> DUF4633 Domain of unknown function (DUF4633) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 0.055 3e+02 7 34 .. 82 109 .. 78 120 .. 0.86 2 ? 3.0 0.1 0.018 96 7 35 .. 126 154 .. 121 167 .. 0.87 3 ? -0.5 0.0 0.21 1.2e+03 10 34 .. 173 197 .. 169 208 .. 0.87 4 ? -0.7 0.0 0.26 1.4e+03 10 34 .. 195 219 .. 192 226 .. 0.88 5 ? -0.5 0.0 0.21 1.2e+03 8 34 .. 237 263 .. 233 274 .. 0.73 6 ? 1.9 0.1 0.039 2.1e+02 7 34 .. 258 285 .. 252 310 .. 0.78 7 ? -2.3 0.0 0.78 4.2e+03 8 28 .. 325 345 .. 322 358 .. 0.76 8 ? 1.1 0.1 0.07 3.8e+02 7 34 .. 346 373 .. 340 382 .. 0.80 9 ? 1.9 0.1 0.04 2.2e+02 7 35 .. 368 396 .. 363 406 .. 0.87 10 ? -0.7 0.0 0.25 1.4e+03 10 34 .. 393 417 .. 385 424 .. 0.87 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.055 DUF4633 7 sqslRgPrpsYgkLqepwgrplegrlrR 34 s lR+P s g+ +++g l + lrR T138937_1 82 STLLRRPTASAGRFTDSHGLCLSTLLRR 109 6679***************999888888 PP == domain 2 score: 3.0 bits; conditional E-value: 0.018 DUF4633 7 sqslRgPrpsYgkLqepwgrplegrlrRa 35 s+ lR+P s g+ +++g l + lrR T138937_1 126 SRLLRRPTASAGRFTDSHGLCLSTLLRRP 154 899****************9998888885 PP == domain 3 score: -0.5 bits; conditional E-value: 0.21 DUF4633 10 lRgPrpsYgkLqepwgrplegrlrR 34 lR+P s g+ +++g l g lrR T138937_1 173 LRRPAASAGRFTDSHGLCLWGLLRR 197 89*************9998888888 PP == domain 4 score: -0.7 bits; conditional E-value: 0.26 DUF4633 10 lRgPrpsYgkLqepwgrplegrlrR 34 lR+P s g+ +++g l g lrR T138937_1 195 LRRPAASAGRFTDSHGLCLWGLLRR 219 8***************998888887 PP == domain 5 score: -0.5 bits; conditional E-value: 0.21 DUF4633 8 qslRgPrpsYgkLqepwgrplegrlrR 34 lR P s g+ +++g l lrR T138937_1 237 TLLRWPTASAGRFTDSHGLCLSRLLRR 263 568889999999999888877665555 PP == domain 6 score: 1.9 bits; conditional E-value: 0.039 DUF4633 7 sqslRgPrpsYgkLqepwgrplegrlrR 34 s+ lR+P s g+ +++g l l+R T138937_1 258 SRLLRRPTASAGRFTDSHGLCLSRLLQR 285 7889999999999999998776555555 PP == domain 7 score: -2.3 bits; conditional E-value: 0.78 DUF4633 8 qslRgPrpsYgkLqepwgrpl 28 lR P s g+ +++g l T138937_1 325 TLLRWPTASAGRFTDSHGLCL 345 568999999999999998654 PP == domain 8 score: 1.1 bits; conditional E-value: 0.07 DUF4633 7 sqslRgPrpsYgkLqepwgrplegrlrR 34 s+ lR P s g+ +++g l lrR T138937_1 346 SRLLRWPTASAGRFTDSHGLCLSRLLRR 373 889****************987655555 PP == domain 9 score: 1.9 bits; conditional E-value: 0.04 DUF4633 7 sqslRgPrpsYgkLqepwgrplegrlrRa 35 s+ lR+P s g+ +++g l g lrR T138937_1 368 SRLLRRPTVSTGRFTDSHGLCLWGLLRRP 396 899****************9998888884 PP == domain 10 score: -0.7 bits; conditional E-value: 0.25 DUF4633 10 lRgPrpsYgkLqepwgrplegrlrR 34 lR+P s g+ +++g l lrR T138937_1 393 LRRPTASAGRFTDSHGLCLSMLLRR 417 8**************9888777777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (778 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 87 (0.00533546); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3424.19 // Query: T138937_2 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 3317.71 // Query: T138937_3 [L=777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 14.1 0.0 2.4e+02 1.8 0.0 5.0 9 RPN13_C UCH-binding domain 2.1 8.5 14.0 14 5.8 0.1 5.7 6 YchF-GTPase_C Protein of unknown function (DUF933) 5.8 6.2 5.8 66 2.7 0.5 3.2 3 CDK5_activator Cyclin-dependent kinase 5 activator protein Domain annotation for each model (and alignments): >> RPN13_C UCH-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.58 3.2e+03 73 112 .] 62 101 .. 41 101 .. 0.71 2 ? -2.2 0.0 0.77 4.2e+03 87 112 .] 98 123 .. 90 123 .. 0.76 3 ? 0.4 0.0 0.12 6.6e+02 75 112 .] 120 167 .. 113 167 .. 0.76 4 ? 1.6 0.0 0.052 2.8e+02 73 112 .] 140 189 .. 134 189 .. 0.67 5 ? 0.0 0.0 0.16 8.5e+02 78 112 .] 167 211 .. 159 211 .. 0.63 6 ? 0.8 0.0 0.093 5.1e+02 81 112 .] 246 277 .. 224 277 .. 0.77 7 ? 1.8 0.0 0.044 2.4e+02 73 112 .] 250 299 .. 245 299 .. 0.66 8 ? 0.8 0.0 0.087 4.7e+02 80 112 .] 333 365 .. 311 365 .. 0.77 9 ? -0.8 0.0 0.28 1.5e+03 81 112 .] 378 409 .. 357 409 .. 0.66 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.58 RPN13_C 73 slsqALqsgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 +l +A q +++ +++ + +++ a+ + +v+ F +A+ T138937_3 62 ELARAAQARAQRKITRAMLIHASKTANRERRQVHRFTRAM 101 5666666666677888888888888999999999999986 PP == domain 2 score: -2.2 bits; conditional E-value: 0.77 RPN13_C 87 lsqlgLdeeavaaaakggveaFlkAl 112 +++ + +++ a+ ++g+v+ F +A+ T138937_3 98 TRAMLIHASTTANRECGQVHRFTRAM 123 55666777888999999999999997 PP == domain 3 score: 0.4 bits; conditional E-value: 0.12 RPN13_C 75 sqAL..........qsgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 ++A+ + gq+ + +++ + +++ a+ ++g+v+ F +A+ T138937_3 120 TRAMli*asttancECGQVHRFTRAMLIHASTTANRECGQVHRFTRAM 167 55555555555554568999999999999999999*********9997 PP == domain 4 score: 1.6 bits; conditional E-value: 0.052 RPN13_C 73 slsqAL..........qsgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 +++A+ + gq+ + +++ + +++ a+ ++g+v+ F +A+ T138937_3 140 RFTRAMlihasttanrECGQVHRFTRAMLMGPSTTASRECGQVHRFTRAM 189 45555555555555433388888888888888888888888888888886 PP == domain 5 score: 0.0 bits; conditional E-value: 0.16 RPN13_C 78 L..........qsgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 + + gq+ + +++ + +++ a+ ++g+v+ F +A+ T138937_3 167 MlmgpsttasrECGQVHRFTRAMLVGPSTTASCECGQVHRFTRAM 211 444444444423377777777777888888888888888888875 PP == domain 6 score: 0.8 bits; conditional E-value: 0.093 RPN13_C 81 gqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 gq+ + +++ +++++ a+ ++g+v+ F +A+ T138937_3 246 GQVHRFTRAMLIQASTTANRECGQVHRFTRAM 277 88888888899999999999999999999986 PP == domain 7 score: 1.8 bits; conditional E-value: 0.044 RPN13_C 73 slsqAL..........qsgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 +++A+ + gq+ + +++ +++++ a+ ++g+v+ F +A+ T138937_3 250 RFTRAMliqasttanrECGQVHRFTRAMLIQASTTANRECGQVHRFTRAM 299 45555555555555433378888888888888888888888888888886 PP == domain 8 score: 0.8 bits; conditional E-value: 0.087 RPN13_C 80 sgqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 gq+ + +++ ++++++a+ ++g+v+ F +A+ T138937_3 333 CGQVHRFTRAMLIQASTMANRECGQVHRFTRAM 365 388888888899999999999999999999986 PP == domain 9 score: -0.8 bits; conditional E-value: 0.28 RPN13_C 81 gqlgpvlsqlgLdeeavaaaakggveaFlkAl 112 q+ + +++ + +++ a+ + g+v+ F +A+ T138937_3 378 RQVHRFTRAMLMGPSTTANRERGQVHRFTRAM 409 45566667777778888888888888888886 PP >> YchF-GTPase_C Protein of unknown function (DUF933) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.1 0.11 5.9e+02 12 32 .. 98 118 .. 73 124 .. 0.84 2 ? 1.1 0.1 0.079 4.3e+02 12 32 .. 142 162 .. 135 187 .. 0.84 3 ? -1.8 0.0 0.62 3.4e+03 20 43 .. 216 239 .. 203 250 .. 0.56 4 ? 5.8 0.1 0.0025 14 12 53 .. 252 293 .. 245 311 .. 0.81 5 ? 5.2 0.4 0.0041 22 12 52 .. 340 380 .. 310 412 .. 0.75 6 ? -1.3 0.0 0.43 2.4e+03 20 52 .. 392 424 .. 381 436 .. 0.61 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.11 YchF-GTPase_C 12 vraWtikkgttapqaAgviHs 32 +ra i+ tta++ +g++H T138937_3 98 TRAMLIHASTTANRECGQVHR 118 688889999999999999995 PP == domain 2 score: 1.1 bits; conditional E-value: 0.079 YchF-GTPase_C 12 vraWtikkgttapqaAgviHs 32 +ra i+ tta++ +g++H T138937_3 142 TRAMLIHASTTANRECGQVHR 162 689999999999999999995 PP == domain 3 score: -1.8 bits; conditional E-value: 0.62 YchF-GTPase_C 20 gttapqaAgviHsDfekgFiraev 43 tta++ +g++H i+ + T138937_3 216 STTANRECGQVHRFTWAMLIHTST 239 566666666666544444444333 PP == domain 4 score: 5.8 bits; conditional E-value: 0.0025 YchF-GTPase_C 12 vraWtikkgttapqaAgviHsDfekgFiraevikyedlvelg 53 +ra i+ tta++ +g++H + i+a +++ ++ +++ T138937_3 252 TRAMLIQASTTANRECGQVHRFTRAMLIQASTTANRECGQVH 293 789999999***********9999999999998877766665 PP == domain 5 score: 5.2 bits; conditional E-value: 0.0041 YchF-GTPase_C 12 vraWtikkgttapqaAgviHsDfekgFiraevikyedlvel 52 +ra i+ t a++ +g++H + i+a +++ ++ ++ T138937_3 340 TRAMLIQASTMANRECGQVHRFTRAMLIQASTTANREHRQV 380 57777777777777777777777777777777776666655 PP == domain 6 score: -1.3 bits; conditional E-value: 0.43 YchF-GTPase_C 20 gttapqaAgviHsDfekgFiraevikyedlvel 52 tta++ g++H + i+a +++ ++ ++ T138937_3 392 STTANRERGQVHRFTRAMLIHASTTANREHRQV 424 566666666777666666666666665555544 PP >> CDK5_activator Cyclin-dependent kinase 5 activator protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.5 0.012 66 164 217 .. 58 108 .. 41 114 .. 0.71 2 ? 2.7 0.0 0.013 68 180 217 .. 247 284 .. 204 293 .. 0.80 3 ? 1.0 0.1 0.043 2.3e+02 182 217 .. 337 372 .. 324 417 .. 0.74 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.012 CDK5_activator 164 knklaqkeelslsls.khvikqvqassiqtkdnnqedeklssktprktviqasts 217 k+ k el+ ++ + k + a i+ +++++++++ ++++r +i ast T138937_3 58 KH----KAELARAAQaRAQRKITRAMLIHASKTANRERRQVHRFTRAMLIHASTT 108 33....334444444333444456788999999999999999***********96 PP == domain 2 score: 2.7 bits; conditional E-value: 0.013 CDK5_activator 180 hvikqvqassiqtkdnnqedeklssktprktviqasts 217 +v + + a iq +++++++ ++++r +iqast T138937_3 247 QVHRFTRAMLIQASTTANRECGQVHRFTRAMLIQASTT 284 56666778888888888888888888999999999985 PP == domain 3 score: 1.0 bits; conditional E-value: 0.043 CDK5_activator 182 ikqvqassiqtkdnnqedeklssktprktviqasts 217 + + a iq ++ ++++ ++++r +iqast T138937_3 337 HRFTRAMLIQASTMANRECGQVHRFTRAMLIQASTT 372 455566677777777766666777777788888774 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 3473.23 // Query: T110126_1 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 1950.13 // Query: T110126_2 [L=408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 1945.36 // Query: T110126_3 [L=408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (408 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 2012.45 // Query: T124761_1 [L=3416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 388 (0.0237949); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.40s 00:00:01.81 Elapsed: 00:00:00.74 # Mc/sec: 13206.21 // Query: T124761_2 [L=3416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.70 # Mc/sec: 13960.85 // Query: T124761_3 [L=3416] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3416 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.66 # Mc/sec: 14806.96 // Query: T149684_1 [L=562] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.018 14.6 7.8 0.027 14.1 7.8 1.2 1 DUF106 Integral membrane protein DUF106 0.22 9.8 0.6 0.28 9.5 0.6 1.0 1 SID-1_RNA_chan dsRNA-gated channel SID-1 0.42 8.7 9.7 0.62 8.2 9.7 1.1 1 CDC45 CDC45-like protein 0.58 9.2 3.0 0.81 8.7 3.0 1.1 1 Zip ZIP Zinc transporter 1.2 9.0 6.5 1.8 8.5 6.5 1.1 1 RP-C_C Replication protein C C-terminal region 1.5 6.5 9.5 2 6.1 9.5 1.0 1 V_ATPase_I V-type ATPase 116kDa subunit family 2.2 7.0 9.6 3.1 6.5 9.6 1.1 1 PA26 PA26 p53-induced protein (sestrin) 5.2 6.8 32.9 9.2 6.0 32.9 1.3 1 Med19 Mediator of RNA pol II transcription subunit 6.7 6.0 16.1 9.9 5.5 16.1 1.2 1 Sec62 Translocation protein Sec62 9.1 5.9 16.0 13 5.4 16.0 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> DUF106 Integral membrane protein DUF106 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 7.8 1.7e-05 0.027 42 118 .. 219 296 .. 201 299 .. 0.75 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.7e-05 DUF106 42 kkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemmmdqmkpmivtmipqil.iffwlnsffsgfvv 118 k+ ++ ++ +lq + + + +++k+k+kk +k+++e +++ ++ +++ k+ + +ipq+ + fw+ + +g ++ T149684_1 219 KTKKQNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERKQERKKKRKEKEKSLGIAFIPQTSsMLFWILPITKGLTT 296 2223334444555556666666999************************************97255888877777665 PP >> SID-1_RNA_chan dsRNA-gated channel SID-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.6 0.00017 0.28 160 245 .. 209 292 .. 163 299 .. 0.69 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00017 SID-1_RNA_chan 160 ksssasaslesvssklksestssveeeddydtlediesdknvirtkkslvvsdlsrkdkevlekkykiylwniitvavfYalpviq 245 k+++++++++++++ +++++ ++ e++ +tl++ +++k+ ++kk ++ +k+++++ek+ i ++ +++ ++f+ lp+ + T149684_1 209 KQTNKQKPKHKTKK-QNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERKQE-RKKKRKEKEKSLGIAFIPQTSSMLFWILPITK 292 33333444444443.33444445556666666666666655555555555444.5777778888889999999999*******976 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 9.7 0.00038 0.62 162 233 .. 213 285 .. 200 291 .. 0.43 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00038 CDC45 162 eeeskkkrksksdeeeee.....edeeersrkrrrsepsakklrrrlkkerrkyeavlekyysqgtsygesvsslmY 233 +++ k+k+k+++ ++ + e++++ ++++++++++kk+++++k+er+k+++ ek s g + +ss+++ T149684_1 213 KQKPKHKTKKQNTNQ--KtalqpERQSQTLSQKKKKKKKKKKKKKERKQERKKKRK--EKEKSLGIAFIPQTSSMLF 285 111122222111111..112344334444444444442333444444444444433..4555556666666666665 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 3.0 0.0005 0.81 114 172 .. 211 271 .. 193 297 .. 0.42 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.0005 Zip 114 asssssesaakksvsndkveeseeked..hvaeadtdadskeelrngkqeksesekeqase 172 +++++++ ++kk+ n+k+ + e ++ +++++++++k++++++kqe ++++ke++++ T149684_1 211 TNKQKPKHKTKKQNTNQKTALQPERQSqtLSQKKKKKKKKKKKKKERKQERKKKRKEKEKS 271 2222222222222222222222222220022222222333333333333333333333333 PP >> RP-C_C Replication protein C C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 6.5 0.0011 1.8 37 101 .. 202 271 .. 191 289 .. 0.42 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0011 RP-C_C 37 eevenaleaklkaenssanesqnerhiqnsnpesssesepasekereekeaaaasaeaepsek.....ks 101 ++++ l++ +k++ ++++++qn+++++ +pe +s++ ++++k++++k+++++++++e ++k ks T149684_1 202 NRARPCLKQTNKQKPKHKTKKQNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERKQERKKKrkekeKS 271 4444444444444444444555555555555554444332222222222222222222211111121233 PP >> V_ATPase_I V-type ATPase 116kDa subunit family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 9.5 0.0012 2 629 702 .. 207 279 .. 203 289 .. 0.55 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0012 V_ATPase_I 629 lilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeefdfgevfihq 702 ++ + +++k k+k+kk++++++++ + e+++++ +++++++++++++++e+++e++++++e+e+++g fi q T149684_1 207 CLKQTNKQK-PKHKTKKQNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERKQERKKKRKEKEKSLGIAFIPQ 279 444444333.3333333344444444444444444455555556666666666666777777777887777776 PP >> PA26 PA26 p53-induced protein (sestrin) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 9.6 0.0019 3.1 187 254 .. 204 271 .. 192 285 .. 0.80 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0019 PA26 187 lksasasanekedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekees 254 ++ +++n+++ +++++++++++k+a ++e + ++l ++ kk ++++++++e ++e++++r eke+s T149684_1 204 ARPCLKQTNKQKPKHKTKKQNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERKQERKKKRKEKEKS 271 4455555677788888899999999*******************999999998888888888888776 PP >> Med19 Mediator of RNA pol II transcription subunit 19 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 32.9 0.0057 9.2 102 163 .. 205 269 .. 198 273 .. 0.41 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0057 Med19 102 rllkkqePkkknkekhkkskvkdakseetlsdseteegfekkhkkkk....kedDkerkkkkkekk 163 r kq k+k k+k kk+ +++++ + +s+t + kk+kkkk ke +erkkk+kek+ T149684_1 205 RPCLKQTNKQKPKHKTKKQNTNQKTALQPERQSQTLSQK-KKKKKKKkkkkKERKQERKKKRKEKE 269 555555455566666666665554333333333332222.22222220001334444444444443 PP >> Sec62 Translocation protein Sec62 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 16.1 0.006 9.9 24 78 .. 211 266 .. 199 289 .. 0.40 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.006 Sec62 24 skkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkee.kkkkkkkk 78 ++k+k k+k++k++++++++ + + +sq+ + +k+k+k+kkkkke+ +++kkk+k T149684_1 211 TNKQKPKHKTKKQNTNQKTALQPERQSQTLSQKKKKKKKKKKKKKERkQERKKKRK 266 22222222222222222233333333333333333322222222222122222222 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 16.0 0.008 13 90 155 .. 212 268 .. 195 285 .. 0.32 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.008 RR_TM4-6 90 laee.eiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkkee 155 +++ + + +++++++++ ++e+++++ +++k++k+k+ ++++k+ k+++k+k+ke+ T149684_1 212 NKQKpKHKTKKQNTNQKTALQPERQSQTLSQKKKKKKKK----------KKKKKERKQERKKKRKEK 268 111101111111111111122211111111111111111..........111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (562 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2900 (0.177849); expected 326.1 (0.02) Passed bias filter: 1111 (0.0681344); expected 326.1 (0.02) Passed Vit filter: 387 (0.0237336); expected 16.3 (0.001) Passed Fwd filter: 44 (0.00269839); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.39u 0.43s 00:00:01.81 Elapsed: 00:00:00.87 # Mc/sec: 1848.03 // Query: T149684_2 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 DUF2605 Protein of unknown function (DUF2605) 1.8 8.0 24.1 3.7 7.0 24.1 1.4 1 SR-25 Nuclear RNA-splicing-associated protein Domain annotation for each model (and alignments): >> DUF2605 Protein of unknown function (DUF2605) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 3e-05 0.25 53 85 .. 410 442 .. 396 447 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 3e-05 DUF2605 53 qqeveaakaLfkatdgqvgvevevlvpWHqLvt 85 +ev+ + L++a qv+v++e+l++ HqL + T149684_2 410 LAEVQQVGHLYTARPAQVAVKMELLLQLHQLRA 442 5799**************************966 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 24.1 0.00046 3.7 56 117 .. 209 270 .. 189 280 .. 0.65 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.00046 SR-25 56 kkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkkak 117 +k++++++++ ++ + + ss s + +kk++kkk+k+k+kk+ kk++kkekkk++ T149684_2 209 NKQTNKNQNTKPKNKTQTKKLHSSLSDRARPCLKKKKKKKKRKRKRKKESKKERKKEKKKKN 270 44444444444444444444444444444444588888888888888888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2242 (0.137495); expected 326.1 (0.02) Passed bias filter: 835 (0.0512081); expected 326.1 (0.02) Passed Vit filter: 221 (0.0135533); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.05u 0.43s 00:00:01.48 Elapsed: 00:00:00.69 # Mc/sec: 2325.98 // Query: T149684_3 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.64 9.8 26.0 1 9.1 26.0 1.2 1 Med19 Mediator of RNA pol II transcription subunit 19 4.3 5.9 13.0 6.2 5.4 13.0 1.1 1 Tim54 Inner membrane protein import complex subunit T Domain annotation for each model (and alignments): >> Med19 Mediator of RNA pol II transcription subunit 19 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 26.0 0.00012 1 100 169 .. 201 269 .. 194 275 .. 0.62 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00012 Med19 100 qyrllkkqePkkknkekhkkskvkdakseetls.dseteegfekkhkkkkkedDkerkkkkkekkkkkkrk 169 q + +q +k+ k k +++k+k++ ++ t++ + kk+kkkkke++kerkk +k kkk+krk T149684_3 201 QQSETLSQ-TNKQTKTKTQNQKTKHKPKNCTPA*AT-EPDPVSKKKKKKKKEKEKERKKARKKEKKKRKRK 269 44433333.455556666666666655555554433.35778899999999******99665555555565 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 13.0 0.00076 6.2 196 262 .. 201 283 .. 191 295 .. 0.63 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.00076 Tim54 196 peeeeaeeeeeeeeeekeeeeeee................eeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasa 262 +++e+ ++++++++++++++++++ ++++++k++eke+e+++ +++e+k++k+k+ + i+++d+ +a T149684_3 201 QQSETLSQTNKQTKTKTQNQKTKHkpknctpa*atepdpvSKKKKKKKKEKEKERKKARKKEKKKRKRKISGNCIHSTDFFHA 283 2223333332222222222222224667899****999876666666666777777777777777788888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1688 (0.10352); expected 326.1 (0.02) Passed bias filter: 420 (0.0257574); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.65 # Mc/sec: 2469.12 // Query: T295830_1 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.69 # Mc/sec: 1894.78 // Query: T295830_2 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-06 26.5 0.0 5.7e-06 25.9 0.0 1.2 1 dUTPase dUTPase Domain annotation for each model (and alignments): >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.0 3.5e-10 5.7e-06 5 81 .. 237 313 .. 233 318 .. 0.92 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 3.5e-10 BEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEE CS dUTPase 5 iptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlf 81 +p + + +s+g+++ +++ t++pg+t+ +p++ ++ lp g+ +l+l a+kg++v++ vid dy+ e+++ l T295830_2 237 LPLPMTLRSVGLEVLVPEGGTLPPGDTTAIPLNWKLRLPPGHFGLLLSLNQQAKKGVTVLTEVIDLDYQDEISLLLH 313 566778899*************************************************************9998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 2075.24 // Query: T295830_3 [L=457] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (457 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.52 # Mc/sec: 2514.23 // Query: T044662_1 [L=1244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 5084.10 // Query: T044662_2 [L=1244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.71 # Mc/sec: 5012.50 // Query: T044662_3 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.70 # Mc/sec: 5080.02 // Query: T038634_1 [L=3773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-05 24.2 0.0 4.6e-05 23.5 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 2.8e-09 4.6e-05 8 117 .. 630 734 .. 625 735 .. 0.90 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 2.8e-09 rve 8 wqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnG 106 w vD+ ++++ +g+ ++++ id++s++ +a++v + + ++ + + v ++ r+ s +g+ ++ k++++++ g+ +s+ ++p+ G T038634_1 630 WKVDYNgPFSLWKGQ--HFVINGIDTCSGCKFAIPVCSA--SAKLLPMSSQNVYHRDI--LHRIDSEQGTHFRVKEVQQWALGRGFYWSYYISHHPEAAG 723 889998888866555..**********************..55556666778999999..68************************************** PP rve 107 kvErfnrtlkd 117 +vE+ n++lk+ T038634_1 724 LVEQCNGILKT 734 ********995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.42u 0.39s 00:00:01.81 Elapsed: 00:00:00.82 # Mc/sec: 13163.31 // Query: T038634_2 [L=3773] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3773 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:00.77 # Mc/sec: 14018.07 // Query: T038634_3 [L=3772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.90 # Mc/sec: 11990.06 // Query: T052973_1 [L=6620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.99u 0.37s 00:00:02.36 Elapsed: 00:00:01.03 # Mc/sec: 18387.08 // Query: T052973_2 [L=6620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.93u 0.45s 00:00:02.38 Elapsed: 00:00:00.81 # Mc/sec: 23381.10 // Query: T052973_3 [L=6619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.43s 00:00:02.39 Elapsed: 00:00:00.80 # Mc/sec: 23669.79 // Query: T235992_1 [L=6769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 449 (0.0275359); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.23u 0.43s 00:00:02.66 Elapsed: 00:00:00.82 # Mc/sec: 23615.80 // Query: T235992_2 [L=6769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 866 (0.0531093); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.56u 0.41s 00:00:02.97 Elapsed: 00:00:01.02 # Mc/sec: 18985.25 // Query: T235992_3 [L=6768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.4 6.3 11.2 24 4.8 11.2 1.7 1 LRR19-TM Leucine-rich repeat family 19 TM domain Domain annotation for each model (and alignments): >> LRR19-TM Leucine-rich repeat family 19 TM domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 11.2 0.0015 24 21 52 .. 5168 5199 .. 5161 5217 .. 0.85 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0015 LRR19-TM 21 vvvlalvislLialaikckllyknllsYrHrr 52 +++++++is++i+++++c+ ++ ++ Y H++ T235992_3 5168 IIIIIIIISIIIIIIAHCHHHHHHHHHYLHHH 5199 6889999*********************7764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 710 (0.0435423); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.57u 0.48s 00:00:03.05 Elapsed: 00:00:01.04 # Mc/sec: 18617.40 // Query: T166067_1 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 377 (0.0231203); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 3822.26 // Query: T166067_2 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 540 (0.0331166); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.52 # Mc/sec: 4483.80 // Query: T166067_3 [L=815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.071 13.1 0.1 0.071 13.1 0.1 2.7 3 DUF4519 Domain of unknown function (DUF4519) Domain annotation for each model (and alignments): >> DUF4519 Domain of unknown function (DUF4519) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 4.4e-06 0.071 12 38 .. 349 375 .. 346 378 .. 0.95 2 ? 0.9 4.1 0.03 4.8e+02 10 26 .. 453 469 .. 447 471 .. 0.73 3 ? -3.4 0.0 0.65 1.1e+04 35 53 .. 595 613 .. 595 614 .. 0.90 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 4.4e-06 DUF4519 12 trkdKkeRrkenkeaqekvttvVlPvl 38 ++k+KkeR++++k + + +t V+P+l T166067_3 349 SKKKKKERKEKIKCGRAQWLTPVIPAL 375 79***********************98 PP == domain 2 score: 0.9 bits; conditional E-value: 0.03 DUF4519 10 KEtrkdKkeRrkenkea 26 K +++KkeR+k+ ke+ T166067_3 453 KTPSQKKKERKKKKKEN 469 55567888888888876 PP == domain 3 score: -3.4 bits; conditional E-value: 0.65 DUF4519 35 lPvlavlillivvfvYlkT 53 lPvl + + + v+++T T166067_3 595 LPVLHGSCARVTLHVFMST 613 8999999999999999998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 234 (0.0143505); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 4663.15 // Query: T367414_1 [L=2458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 668 (0.0409665); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.56 # Mc/sec: 12557.00 // Query: T367414_2 [L=2458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 741 (0.0454434); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.27s 00:00:01.30 Elapsed: 00:00:00.55 # Mc/sec: 12785.31 // Query: T367414_3 [L=2458] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2458 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 819 (0.0502269); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.55 # Mc/sec: 12785.31 // Query: T323066_1 [L=1940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.23s 00:00:01.01 Elapsed: 00:00:00.48 # Mc/sec: 11562.52 // Query: T323066_2 [L=1940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.54 # Mc/sec: 10277.80 // Query: T323066_3 [L=1939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.23s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 10667.59 // Query: T157198_1 [L=1356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 7460.16 // Query: T157198_2 [L=1356] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1356 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.53 # Mc/sec: 7319.41 // Query: T157198_3 [L=1355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 7454.66 // Query: T107572_1 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 5618.67 // Query: T107572_2 [L=982] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (982 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 5402.57 // Query: T107572_3 [L=981] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.31 10.7 1.9 0.48 10.1 1.9 1.1 1 COX3 Cytochrome c oxidase subunit III Domain annotation for each model (and alignments): >> COX3 Cytochrome c oxidase subunit III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 1.9 2.9e-05 0.48 80 137 .. 63 120 .. 57 123 .. 0.92 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 2.9e-05 HHHHHHHHHHHHHHHHHHHHHHHHS--GGGTSSSS-TT-----TTSHHHHHHHHHHHH CS COX3 80 lilfiisevllflalfwaffhsalsPtvelGatwpPvGikavnPlevPllntiillss 137 i+f+ s llf+ +f+ ff+ ++e G +w +G + P l+ llss T107572_3 63 TIVFLSSARLLFFFFFFFFFEVESRSVTEAGVQWRELGSLQAPPPGFTLFSCLSLLSS 120 689***********************************99999999999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (981 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 5612.95 // Query: T381754_1 [L=198] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-06 27.6 0.4 4.6e-06 27.2 0.4 1.1 1 VCX_VCY Variable charge X/Y family Domain annotation for each model (and alignments): >> VCX_VCY Variable charge X/Y family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.4 2.8e-10 4.6e-06 35 99 .. 79 142 .. 70 151 .. 0.90 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 2.8e-10 VCX_VCY 35 ttkvakkGkaargGrggkkraakkmaavtapeaesGpaapGpsdqpsqelpqaelppeepvseet 99 ++k ++kGk + +G +k + kk +a + pe +sGp+ dq el q+e p+ + seet T381754_1 79 IPKTTRKGKGTLQGSSRKNVSPKKTTASGKPEEGSGPTVSCHCDQLNEELHQNE-PQLDQNSEET 142 799**********************************************99987.7777777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (198 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 242 (0.0148412); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 1132.89 // Query: T381754_2 [L=197] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (197 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 86 (0.00527413); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 1127.17 // Query: T381754_3 [L=197] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (197 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.51 # Mc/sec: 1105.07 // Query: T071074_1 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6139.34 // Query: T071074_2 [L=1073] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1073 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.50 # Mc/sec: 6139.34 // Query: T071074_3 [L=1072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 6013.35 // Query: T369094_1 [L=1878] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1878 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 482 (0.0295597); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.52 # Mc/sec: 10332.00 // Query: T369094_2 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 10528.98 // Query: T369094_3 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 10528.98 // Query: T158672_1 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 6838.48 // Query: T158672_2 [L=1243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 6972.57 // Query: T158672_3 [L=1242] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1242 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.51 # Mc/sec: 6966.96 // Query: T286672_1 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.4 0.1 0.00031 20.4 0.1 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.0055 16.8 0.0 0.011 15.8 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.1 3.8e-08 0.00031 2 71 .. 943 1011 .. 942 1016 .. 0.88 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 3.8e-08 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehsls 71 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ +l T286672_1 943 TILNIYAPNTG-APRFIKQVLSDLKRDLDS-HTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQADLI 1011 7999***9999.888888888888888887.8**************99888779***********999886 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 1.3e-06 0.011 20 92 .. 859 990 .. 849 1009 .. 0.82 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.3e-06 HHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH......EEEEEEESSSTTSSEEEEEECSEEEEE................................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF Exo_endo_phos 20 aladllkaydadvlglqEvdddelsrlplla......dadaskfgtgkgqggvavlsrfpltsl................................ 77 + +++k++d+ v ++q ++ ++ +l+ + + + ++++ gva+l++ + + + T286672_1 859 QTGKWIKSQDPSVCCIQKTHLTCRDTHRLKIkg*rkiY----QANGKQEKAGVAILVSDKTDFKptkikrdkeghyimvkgsiqqeeltilniyap 950 56789*************99998887777779997651....5566778888888888888666677788888888888888888899******** PP ......................EEEEEE-SS...-BEEEE CS ......................xxxxxxxxx...xxxxxx RF Exo_endo_phos 78 ......................vivlGDfNa...rlDril 92 i++GDfN+ +lDr T286672_1 951 ntgaprfikqvlsdlkrdldshTIIMGDFNTplsTLDRST 990 *******************************888888865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.50 # Mc/sec: 5824.65 // Query: T286672_2 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-116 387.3 8.9 7.2e-116 386.9 8.9 1.1 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 386.9 8.9 4.4e-120 7.2e-116 145 368 .] 584 809 .. 578 809 .. 0.99 Alignments for each domain: == domain 1 score: 386.9 bits; conditional E-value: 4.4e-120 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 +d+leervs +ede++e+++e+k+rekr+k++eqsl +i+ +vkrPnl liGv+es+ e+++klen+l++ii+enfPn++++anv+iqei+rtP+ T286672_2 584 MDQLEERVSVMEDEMNEMKQEGKFREKRIKRNEQSLPEIWGYVKRPNLCLIGVPESDGENGTKLENTLQDIIQENFPNIARQANVQIQEIQRTPQ 678 79********************************************************************************************* PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidk 334 r++ +ra++rhiivr+ kv++k+k+l+a+rekGrvt kGkPirltadl aetl+arrew+++++ilkek+fqPr++yPakls+i++Geik++ +k T286672_2 679 RYSLRRATPRHIIVRFIKVEMKEKLLRAAREKGRVTHKGKPIRLTADLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYLTEK 773 *********************************************************************************************** PP HHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 335 tklrdylstrPalkrllke..knerkdryqaleqar 368 ++lr++++trPal++l ke ++er++ yq+l++++ T286672_2 774 QMLRNFVTTRPALRELPKEalNMERNKWYQPLQNHA 809 **********************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 517 (0.0317061); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 5943.52 // Query: T286672_3 [L=1018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-24 86.8 6.3 1.7e-24 86.2 6.3 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.01 15.9 0.3 0.02 14.9 0.3 1.4 1 Med2 Mediator complex subunit 2 0.071 11.3 4.9 0.1 10.8 4.9 1.1 1 DUF4613 Domain of unknown function (DUF4613) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.2 6.3 3.2e-28 1.7e-24 1 121 [. 473 577 .. 473 581 .. 0.93 Alignments for each domain: == domain 1 score: 86.2 bits; conditional E-value: 3.2e-28 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX.. CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlkii 88 +Gkk+ rk++nsk +++ +P+ke+sssPat e+++++ f+elr+e +++++y++++e+i++k+ke++ ++k+++e ntek+lk T286672_3 473 MGKKQ---SRKTGNSKKQSTPPPPKERSSSPAT--EQSWMETYFDELREESFRRSNYSDVQEEIQTKGKEVKnFEKNLDEcitritNTEKCLK-- 560 79999...9************************..************************************99*******8888888888888.. PP ................XXXXXXXXXXXXXXXXX CS Transposase_22 89 kekqentskqvmemnkellelktkvdelkkeqs 121 el+elk+k++el +e+ T286672_3 561 ----------------ELMELKAKARELCEECI 577 ................88888888888888885 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.3 3.7e-06 0.02 44 85 .. 531 572 .. 519 580 .. 0.86 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 3.7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeee 85 +++ +++k+F++ LD+ ++++++++++++l+e k + +e+ T286672_3 531 IQTKGKEVKNFEKNLDECITRITNTEKCLKELMELKAKAREL 572 5555789****************************9998775 PP >> DUF4613 Domain of unknown function (DUF4613) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 4.9 1.9e-05 0.1 482 597 .. 457 571 .. 436 577 .. 0.60 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 1.9e-05 DUF4613 482 siqseksrrkLieeiksqsplssvvdlsekkssessvaletldaepvnrsaalasasstsdesstpespkve........................kkkn 557 s++++++r + ++++++ +++ +++ +s +s+ + +++++sp +e +++ T286672_3 457 SVHHHHQRP----------------------KVDKTTKMGKKQSRKTGNSKK---QSTPPPPKERSSSPATEqswmetyfdelreesfrrsnysdvQEEI 531 333333332......................333333333333332222222...222233333333333334445666666666666666777778999 PP DUF4613 558 lekekeaeqlskelerlsekltevqqsLseltdllqngkk 597 +k ke+++++k+l++ ++++t+ +++L el++l+ + ++ T286672_3 532 QTKGKEVKNFEKNLDECITRITNTEKCLKELMELKAKARE 571 99*******************************9988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 336 (0.0206059); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.50 # Mc/sec: 5824.65 // Query: T281916_1 [L=824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 379 (0.023243); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.46 # Mc/sec: 5124.62 // Query: T281916_2 [L=824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 4135.66 // Query: T281916_3 [L=823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 296 (0.0181528); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.59 # Mc/sec: 3990.62 // Query: T260074_1 [L=322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-13 48.0 0.4 1.3e-12 47.6 0.4 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.6 0.4 7.7e-17 1.3e-12 2 70 .. 44 112 .. 43 140 .. 0.88 Alignments for each domain: == domain 1 score: 47.6 bits; conditional E-value: 7.7e-17 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvp 70 y p+++ +l nwk+n +++e+pq+l ++++++ th+pt d qll l+ +eer+rvl k ++ T260074_1 44 YQPITCVNLLNWKNNTQNYTEKPQALIDFLQAVIQTHNPTLADWHQLLMFLFNSEERRRVLQAVTKWLE 112 8899*******************************************************9987777654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 429 (0.0263093); expected 326.1 (0.02) Passed bias filter: 331 (0.0202993); expected 326.1 (0.02) Passed Vit filter: 32 (0.00196247); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.53 # Mc/sec: 1738.09 // Query: T260074_2 [L=322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (322 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 1644.98 // Query: T260074_3 [L=321] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-24 84.0 0.1 1.3e-23 83.5 0.1 1.1 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.18 10.9 0.1 0.23 10.6 0.1 1.1 1 6PF2K 6-phosphofructo-2-kinase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.5 0.1 1.6e-27 1.3e-23 110 188 .. 152 230 .. 133 235 .. 0.92 Alignments for each domain: == domain 1 score: 83.5 bits; conditional E-value: 1.6e-27 Gag_p30 110 qlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrle 188 ++ll l a++ tn+ kv ev+qgkeespa f erl eayr+ytp+dp++pe++ + ++++ qsa d+r+klq+ T260074_3 152 EALLEILMRGAQKATNVNKVSEVIQGKEESPAQFYERLCEAYRMYTPFDPDSPENQRMIHMALVRQSAEDMRRKLQKQA 230 6788888888999***************************************************************865 PP >> 6PF2K 6-phosphofructo-2-kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.1 2.8e-05 0.23 158 198 .. 178 218 .. 163 236 .. 0.82 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 2.8e-05 HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTE CS 6PF2K 158 teeaikdflkRlenyekqyeplddeedeelsyIkvidvgks 198 +ee+ ++f +Rl + +++y+p+d+++ e+ ++I++ v +s T260074_3 178 KEESPAQFYERLCEAYRMYTPFDPDSPENQRMIHMALVRQS 218 5778899****************99999*****99877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (321 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 280 (0.0171716); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.66 # Mc/sec: 1391.40 // Query: T182773_1 [L=723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 3628.74 // Query: T182773_2 [L=723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 535 (0.03281); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.69 # Mc/sec: 2997.65 // Query: T182773_3 [L=723] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (723 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.64 # Mc/sec: 3231.84 // Query: T289517_1 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 3790.60 // Query: T289517_2 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.70 # Mc/sec: 3465.69 // Query: T289517_3 [L=848] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (848 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 199 (0.0122041); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.67 # Mc/sec: 3620.87 // Query: T260680_1 [L=1827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 387 (0.0237336); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 9861.77 // Query: T260680_2 [L=1827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 436 (0.0267386); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 9169.71 // Query: T260680_3 [L=1827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.61 # Mc/sec: 8568.42 // Query: T210739_1 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.53 # Mc/sec: 1775.87 // Query: T210739_2 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.62 # Mc/sec: 1513.47 // Query: T210739_3 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.56 # Mc/sec: 1646.23 // Query: T305788_1 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.56 # Mc/sec: 4061.36 // Query: T305788_2 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.60 # Mc/sec: 3790.60 // Query: T305788_3 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-26 91.5 0.0 3.6e-26 90.7 0.0 1.4 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.7 0.0 2.2e-30 3.6e-26 15 80 .] 212 277 .. 212 277 .. 0.99 Alignments for each domain: == domain 1 score: 90.7 bits; conditional E-value: 2.2e-30 Transposase_1 15 getpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 +e+pk++p+p+lhqk +m+tV Wsa+gli+++f +pg+ i se+Y+qq+d++++klq+++palvnr T305788_3 212 EEAPKHFPRPNLHQKEFMVTVSWSAAGLIHCSFPNPGKIISSEKYTQQIDEMHRKLQCLQPALVNR 277 699*************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45 # Mc/sec: 5054.13 // Query: T002708_1 [L=5658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.41s 00:00:02.01 Elapsed: 00:00:00.72 # Mc/sec: 22481.36 // Query: T002708_2 [L=5658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.38s 00:00:01.89 Elapsed: 00:00:00.70 # Mc/sec: 23123.68 // Query: T002708_3 [L=5657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5657 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.74u 0.35s 00:00:02.09 Elapsed: 00:00:00.80 # Mc/sec: 20229.64 // Query: T302121_1 [L=844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1195 (0.0732859); expected 326.1 (0.02) Passed bias filter: 203 (0.0124494); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.47s 00:00:01.87 Elapsed: 00:00:00.77 # Mc/sec: 3135.77 // Query: T302121_2 [L=844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1607 (0.0985527); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.38s 00:00:01.77 Elapsed: 00:00:00.81 # Mc/sec: 2980.91 // Query: T302121_3 [L=844] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (844 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1341 (0.0822397); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 12 (0.000735925); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:00.70 # Mc/sec: 3449.34 // Query: T166000_1 [L=1965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1965 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.64 # Mc/sec: 8783.64 // Query: T166000_2 [L=1964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.70 # Mc/sec: 8026.67 // Query: T166000_3 [L=1964] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1964 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.68 # Mc/sec: 8262.75 // Query: T184479_1 [L=3816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.86 # Mc/sec: 12694.10 // Query: T184479_2 [L=3816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:00.86 # Mc/sec: 12694.10 // Query: T184479_3 [L=3816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.51u 0.34s 00:00:01.85 Elapsed: 00:00:00.71 # Mc/sec: 15375.95 // Query: T376366_1 [L=6427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.06u 0.44s 00:00:02.50 Elapsed: 00:00:00.79 # Mc/sec: 23274.12 // Query: T376366_2 [L=6427] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6427 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.44s 00:00:02.28 Elapsed: 00:00:00.78 # Mc/sec: 23572.51 // Query: T376366_3 [L=6426] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6426 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.42s 00:00:02.24 Elapsed: 00:00:00.81 # Mc/sec: 22695.92 // Query: T112869_1 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 127 (0.00778854); expected 326.1 (0.02) Passed bias filter: 26 (0.00159451); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.68 # Mc/sec: 2801.93 // Query: T112869_2 [L=666] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (666 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3342.65 // Query: T112869_3 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 3170.75 // Query: T353731_1 [L=2145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:00.76 # Mc/sec: 8074.32 // Query: T353731_2 [L=2145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.62 # Mc/sec: 9897.55 // Query: T353731_3 [L=2145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.70 # Mc/sec: 8766.40 // Query: T138142_1 [L=8274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1310 (0.0803385); expected 326.1 (0.02) Passed bias filter: 384 (0.0235496); expected 326.1 (0.02) Passed Vit filter: 121 (0.00742058); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.94u 0.57s 00:00:05.51 Elapsed: 00:00:01.22 # Mc/sec: 19402.06 // Query: T138142_2 [L=8274] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8274 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1181 (0.0724273); expected 326.1 (0.02) Passed bias filter: 281 (0.0172329); expected 326.1 (0.02) Passed Vit filter: 79 (0.00484484); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.86u 0.49s 00:00:04.34 Elapsed: 00:00:01.03 # Mc/sec: 22981.08 // Query: T138142_3 [L=8273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8273 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1405 (0.0861646); expected 326.1 (0.02) Passed bias filter: 386 (0.0236723); expected 326.1 (0.02) Passed Vit filter: 128 (0.00784987); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.57u 0.47s 00:00:05.04 Elapsed: 00:00:01.02 # Mc/sec: 23203.58 // Query: T145649_1 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.23 11.4 9.3 0.31 11.0 9.3 1.1 1 DDHD DDHD domain 0.88 9.2 28.5 1.2 8.8 28.5 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 1.7 7.2 19.2 2.4 6.7 19.2 1.1 1 Presenilin Presenilin 2.3 6.8 24.5 3 6.4 24.5 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tra 3.7 6.8 14.9 6.5 6.0 14.9 1.3 1 SpoIIP Stage II sporulation protein P (SpoIIP) 4.5 8.3 8.2 7.4 7.6 8.2 1.4 1 BORG_CEP Cdc42 effector Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 9.3 0.00011 0.31 130 191 .. 337 400 .. 293 452 .. 0.51 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00011 DDHD 130 esaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee..eaeekka 191 +++k+++++ ++er +e++k++++++++++++++++++++ +++k++ ++k+ e+ +++e+++ T145649_1 337 KTKKKKKEERKKERRKERKKKERKKERKKERKKERKKERKRERRKERKKKKKKEKkeRKKERER 400 2222222222222222222222222222222222222111111111111111111111111111 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 28.5 0.00045 1.2 67 157 .. 323 408 .. 317 417 .. 0.44 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00045 RR_TM4-6 67 eagLgDlseteaeesptpelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkkeeae 157 +a+LgD e+++ +kkk++e++++ ++++++e+++e+ +k+ +++++ke+k+++++e kk++++e++e kk ++++++kk ++e T145649_1 323 HASLGDRVRLCQEKKT---KKKKKEERKKERRKERKKKERKKER-KKERKKERKKERKRERRKERKKKKKKEKKERKK-ERERKEKKRKTE 408 5677887777777663...3344444444444444444555555.333333333333333333333333333333332.333333333333 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 19.2 0.00088 2.4 240 315 .. 336 403 .. 323 422 .. 0.30 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00088 Presenilin 240 eeeaekkeeeaseeskeeeseeesseksassseseeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeee 315 +++++kk+ee ++e+++e++++e ++++++++++e+++e+++++ + e+++ ++++e++e+++e+e++e+ T145649_1 336 KKTKKKKKEERKKERRKERKKKERKKERKKERKKERKKERKRERRK---ERKK-----KKKKEKKERKKERERKEK 403 1111111111111111111111111111111111111111111111...1111.....111111111111111111 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 24.5 0.0011 3 42 112 .. 337 403 .. 320 425 .. 0.35 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0011 NPR3 42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeekeeededd 112 + +k+k+++kk++rk+++++++kk++++++k+e+++++ +++ +ke +++++ke++e++ke e++++ T145649_1 337 KTKKKKKEERKKERRKERKKKERKKERKKERKKERKKER----KRERRKERKKKKKKEKKERKKERERKEK 403 111222111122222221111111111111111111111....1111111111111111111111111111 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 14.9 0.0024 6.5 20 66 .. 345 392 .. 321 427 .. 0.40 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0024 SpoIIP 20 eeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.dse 66 e+++++++e ++ke+++e ++e+++e ++e k e+++e k+k++ +++ T145649_1 345 ERKKERRKERKKKERKKERKKERKKERKKERKRERRKERKKKKKkEKK 392 111111111111111111111111111111111111111111111111 PP >> BORG_CEP Cdc42 effector # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 8.2 0.0027 7.4 28 86 .. 340 394 .. 293 429 .. 0.47 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0027 BORG_CEP 28 kepr.epkseesseekkslqedaelekadekssasekkseksngslsdssslssksksee 86 k+++ e k+e+ +e+kk+ e++k+ +k+ ++e+k+e+++ + ++ ++ ++k+k+e+ T145649_1 340 KKKKeERKKERRKERKKK-----ERKKERKKERKKERKKERKRERRKERKKKKKKEKKER 394 111111222222222111.....1111112222222222222222222222222222221 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2594 (0.159083); expected 326.1 (0.02) Passed bias filter: 926 (0.0567889); expected 326.1 (0.02) Passed Vit filter: 542 (0.0332393); expected 16.3 (0.001) Passed Fwd filter: 125 (0.00766589); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 1.68u 0.41s 00:00:02.09 Elapsed: 00:00:00.80 # Mc/sec: 1805.90 // Query: T145649_2 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.2 8.2 10.6 3.1 7.7 10.6 1.1 1 DDHD DDHD domain 5 6.1 11.5 6.4 5.8 11.5 1.1 1 Zip ZIP Zinc transporter Domain annotation for each model (and alignments): >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 10.6 0.00038 3.1 125 189 .. 338 401 .. 313 454 .. 0.54 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00038 DDHD 125 klgeeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkeleeeaeek 189 + +++++++ +++ k+++r++e++ke+++++++e++++ +++ +++ ++k + ++ke ++ ++ek T145649_2 338 QKKKRKKKERKKEGKKEKRKKERKKERKKERKKERKKEREKEGRKERKRKRKKRKKERKK-EKEK 401 222222333333333333333333333332222222222222222222222222212222.1111 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 11.5 0.00078 6.4 103 178 .. 331 406 .. 316 475 .. 0.73 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00078 Zip 103 ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkek 178 +s +k+k++kk ++++ +++ kk+ +++ +++++ke++++ ++++++++ ++r++k +k ++e ++++e+++kek T145649_2 331 DSVKKKKQKKKRKKKERKKEGKKEKRKKERKKERKKERKKERKKEREKEGRKERKRKRKKRKKERKKEKEKKRKEK 406 5556666666666666666666666666666666666666666666666666666666666666666554444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2403 (0.147369); expected 326.1 (0.02) Passed bias filter: 795 (0.0487551); expected 326.1 (0.02) Passed Vit filter: 456 (0.0279652); expected 16.3 (0.001) Passed Fwd filter: 84 (0.00515148); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.50u 0.36s 00:00:01.86 Elapsed: 00:00:00.73 # Mc/sec: 1979.07 // Query: T145649_3 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.017 13.7 43.0 0.024 13.2 43.0 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 0.13 11.6 23.1 0.2 10.9 23.1 1.2 1 DUF1510 Protein of unknown function (DUF1510) 3.4 7.8 30.3 6.8 6.8 30.3 1.4 1 DUF3807 Protein of unknown function (DUF3807) Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 43.0 4.5e-06 0.024 111 184 .. 335 405 .. 329 481 .. 0.49 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.5e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 111 srkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkk 184 ++++kkke++kk+++ke+ +k++++ke +ke++++++ke++ke+kk+ +k++eke ++er+k+++r+k+++kk T145649_3 335 KKNKKKKERRKKERKKER--KKKERKKERKKERKKERKKERKKERKKEGKKEKEKE-RKERKKERKRKKRKEKK 405 111111111111111111..122222222233333333333333222222222221.11222222222222211 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 23.1 3.7e-05 0.2 48 118 .. 335 404 .. 315 434 .. 0.44 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 3.7e-05 DUF1510 48 ddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessd 118 +++++++e ++k++kke ++++ +++++++ ++e++k+ ++e +++ ++e++++ ++ +++++ ++ +++ T145649_3 335 KKNKKKKERRKKERKKERKKKER-KKERKKERKKERKKERKKERKKEGKKEKEKERKERKKERKRKKRKEK 404 22222222222222222222222.22222222222222222222211111111111111111111111111 PP >> DUF3807 Protein of unknown function (DUF3807) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 30.3 0.0013 6.8 66 145 .. 330 406 .. 319 435 .. 0.51 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0013 DUF3807 66 eallRereleeeeeeeeeedkeaedssseeseeqekkkkkakkskkkkkrakkakekkkkkeekkidlrkrtwdkvdkgl 145 e+l R+++++++e +++e++ke ++++ ++++++e+kk+++k++kk++k++ k++++k++ke+kk+ rkr+++k +k T145649_3 330 ETLSRKKNKKKKERRKKERKKERKKKERKKERKKERKKERKKERKKERKKEGKKEKEKERKERKKE--RKRKKRK-EKKN 406 567888887777755555555554433333333333333333333333322222222222222222..2332222.2222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2595 (0.159144); expected 326.1 (0.02) Passed bias filter: 771 (0.0472832); expected 326.1 (0.02) Passed Vit filter: 448 (0.0274745); expected 16.3 (0.001) Passed Fwd filter: 86 (0.00527413); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:00.76 # Mc/sec: 1900.95 // Query: T192686_1 [L=4049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.72 # Mc/sec: 16088.20 // Query: T192686_2 [L=4049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-46 158.6 0.4 1.7e-46 157.9 0.4 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 2.9e-17 63.0 3.0 5.6e-17 62.1 3.0 1.3 1 GP41 Retroviral envelope protein 0.0011 18.1 0.1 0.0026 16.9 0.1 1.6 1 IN_DBD_C Integrase DNA binding domain ------ inclusion threshold ------ 0.027 14.4 0.3 0.053 13.5 0.3 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 157.9 0.4 4.1e-50 1.7e-46 1 168 [. 298 469 .. 298 470 .. 0.88 Alignments for each domain: == domain 1 score: 157.9 bits; conditional E-value: 4.1e-50 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddr.cpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvny 94 +vtw+d +evyvndsvw+pgp d + p++peeegm+ n+sigyr+ppiclg gcl q w+v vpt + s+ + h vsg +++ ++y T192686_2 298 PVTWLDPLVEVYVNDSVWMPGPRD-N*GPTHPEEEGMLTNVSIGYRFPPICLGPDAGCLNCDKQSWMVYVPTHN-GSKASIHAVSGRTFQSldTIKY 392 69********************75.6779******************************************976.68999******99876213444 PP HERV-K_env_2 95 lqdfsy....qrslkfrpkgkpcpkeipk.eskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 ++ sy ++ kf+p+ kpcp++ k k evl we+c+ansa +lqn+ +g ii waprg+f ncsgq + c T192686_2 393 -REHSYvmthRQINKFKPNKKPCPRQAIK*SGK-LEVLTWEDCIANSAAVLQNKSYGIIIHWAPRGRFAVNCSGQHKDC 469 .55566222144569**********98877766.7*****************************************999 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.1 3.0 1.4e-20 5.6e-17 2 173 .. 669 836 .. 668 864 .. 0.89 Alignments for each domain: == domain 1 score: 62.1 bits; conditional E-value: 1.4e-20 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnnt 100 a v+l ++q+a +v++ +kn + + + +id kl +++n l + v+ +G+ +++l+++++++C n C+T+ yna+e We ++ hl+g ++ T192686_2 669 AVVALHSSIQTAGFVDSWQKNSSNLWNSKSQIDEKLANQINNLCQTVIWMGDRIMNLEHRIQMQCDWNTSDFCITPSSYNATEhHWEIIRLHLQG--KED 766 5689******************************************************************************************9..688 PP HHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 101 evsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 ++ +d++kl++ ++++++ l+ +d l + l n + l+W++ ++ ia + + v l +l l+ T192686_2 767 NLTVDIAKLKKRGFEASQAHLTLLPGADILAGATDGLSNTNP-LKWIKT--MGGSTIANFILVCVCLCCLFLV 836 9999*****************************978776655.59*995..5555555555556666666554 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.1 6.3e-07 0.0026 12 48 .. 152 188 .. 148 190 .. 0.88 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 6.3e-07 TS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 12 sglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 +++ G +++++ +G +c+ P +++ ++wvP R ++ T192686_2 152 QNQNLGKGKIITWDQGFACISPEGNQLPVWVPTRHLK 188 566667789*************************998 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.3 1.3e-05 0.053 26 87 .] 229 288 .. 224 288 .. 0.77 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.3e-05 HERV-K_REC 26 kaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 p tw q+k+l+ +a l t +++a + + s+ v+l++ e+ ++ y+a T192686_2 229 HGTPLTWGQMKRLAHIAKDNLRSQNKLLTTSNLMVAMMAVTSLAVSLPIA--EADQNYPYWA 288 56799****************98877777766667777777888888764..5566777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.61u 0.31s 00:00:01.92 Elapsed: 00:00:00.79 # Mc/sec: 14662.66 // Query: T192686_3 [L=4049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4049 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.75 # Mc/sec: 15444.67 // Query: T258965_1 [L=2885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.39s 00:00:01.67 Elapsed: 00:00:00.83 # Mc/sec: 9943.97 // Query: T258965_2 [L=2885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 389 (0.0238562); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.67 # Mc/sec: 12318.65 // Query: T258965_3 [L=2885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.7 6.8 6.6 10 5.7 6.6 1.6 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00063 10 6 41 .. 1944 1979 .. 1930 1990 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00063 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258965_3 1944 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1979 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.64 # Mc/sec: 12896.09 // Query: T016396_1 [L=2207] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2207 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.75 # Mc/sec: 8418.47 // Query: T016396_2 [L=2206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.57 # Mc/sec: 10881.02 // Query: T016396_3 [L=2206] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2206 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.60 # Mc/sec: 10518.32 // Query: T198791_1 [L=1950] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1950 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.68 # Mc/sec: 8203.85 // Query: T198791_2 [L=1949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.69 # Mc/sec: 8080.81 // Query: T198791_3 [L=1949] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1949 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 7965.37 // Query: T196885_1 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.67 # Mc/sec: 5649.07 // Query: T196885_2 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 331 (0.0202993); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.68 # Mc/sec: 5566.00 // Query: T196885_3 [L=1323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.70 # Mc/sec: 5406.97 // Query: T166224_1 [L=1816] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1816 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 7871.62 // Query: T166224_2 [L=1815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 91 (0.00558077); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.67 # Mc/sec: 7749.86 // Query: T166224_3 [L=1815] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1815 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 82 (0.00502882); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.73 # Mc/sec: 7112.89 // Query: T358159_1 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 6856.13 // Query: T358159_2 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-14 52.8 0.1 4.5e-14 52.2 0.1 1.2 1 BDV_P40 Borna disease virus P40 protein Domain annotation for each model (and alignments): >> BDV_P40 Borna disease virus P40 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 0.1 2.7e-18 4.5e-14 38 149 .. 161 264 .. 153 269 .. 0.82 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 2.7e-18 BDV_P40 38 vggsdphpgighekdirqnavalldqsrrdmfhtvtpslvflcllipglhaafvhggvpresylstpvtrgeqtvvktakfyge..kttqrdlteleiss 135 + +phpg g di q l+q + fh + sl+flc+l g+h ++ gv +e+yl t v + kt +yg+ k + ++t le+ss T358159_2 161 IDADEPHPGTGEVEDIEQ-----LNQCLIQHFHLIKTSLIFLCFLFHGIHENLLTVGVSKEAYLMTSVNGKN----KTKMLYGQshKGKDPQFTFLELSS 251 56789***********99.....56666778************************************97655....56677886114455569******* PP BDV_P40 136 ifshccslligvvi 149 ++ +cc llig+ i T358159_2 252 VL-YCCDLLIGIGI 264 97.8*****98755 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.53 # Mc/sec: 7497.53 // Query: T358159_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-28 99.6 0.0 3e-28 98.8 0.0 1.3 1 BDV_P40 Borna disease virus P40 protein Domain annotation for each model (and alignments): >> BDV_P40 Borna disease virus P40 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.8 0.0 1.9e-32 3e-28 150 331 .. 267 449 .. 233 462 .. 0.89 Alignments for each domain: == domain 1 score: 98.8 bits; conditional E-value: 1.9e-32 BDV_P40 150 gssskikagaeqikkrfktmmaalnrpshgetatllqmfnpheaidwingqp.wvgsfv...lsllttdfespgkefmdqiklvasyaq.mttyttikey 244 gss +i+a + q++k+fkt+m al++p+hg+ a ll +n i + + s+v lsl+ +fespgke++dqiklva mt+y tik + T358159_3 267 GSSDRIRASSLQVQKQFKTLMIALQQPTHGDCANLLLSYNAGPVIGLSEDHG*DHLSLV**nLSLV--EFESPGKELLDQIKLVAGR-A*MTAYYTIKMF 363 89*******************************************999888665557766668885..8***************974.6889******** PP BDV_P40 245 laecmdatltipvvayeirdflevsaklkedha.....dlfpflgairhpdaiklaprsfpnlasaafywskkenptmagyrastiqpgasv 331 l +cmd ++ +p v + v k ke +f + ga+ hp + l+p +p+la+ a yw+k+ n t +g++a i pga + T358159_3 364 LEQCMDGSIVLPSVVTD------VVFKEKEKLV*kal*KFFEYGGALYHPVMVELSPSKLPDLAAVANYWAKRLNQTYSGFKAPNIIPGANI 449 ************99764......56777888655547889*************************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 7791.55 // Query: T157251_1 [L=2653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.25s 00:00:01.12 Elapsed: 00:00:00.49 # Mc/sec: 15489.35 // Query: T157251_2 [L=2653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.26s 00:00:01.23 Elapsed: 00:00:00.53 # Mc/sec: 14320.34 // Query: T157251_3 [L=2653] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2653 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.25s 00:00:01.18 Elapsed: 00:00:00.54 # Mc/sec: 14055.15 // Query: T315998_1 [L=2351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2351 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 781 (0.0478965); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.55 # Mc/sec: 12228.75 // Query: T315998_2 [L=2350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 687 (0.0421317); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.26s 00:00:01.26 Elapsed: 00:00:00.55 # Mc/sec: 12223.55 // Query: T315998_3 [L=2350] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2350 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 755 (0.046302); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.26s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 11591.29 // Query: T144143_1 [L=3604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.27s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 17776.61 // Query: T144143_2 [L=3604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3604 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.60 # Mc/sec: 17184.05 // Query: T144143_3 [L=3603] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3603 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.59 # Mc/sec: 17470.46 // Query: T210843_1 [L=2898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 14804.80 // Query: T210843_2 [L=2898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 14545.06 // Query: T210843_3 [L=2898] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2898 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.26s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 14545.06 // Query: T005111_1 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 9313.02 // Query: T005111_2 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 9840.18 // Query: T005111_3 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.54 # Mc/sec: 9652.65 // Query: T316709_1 [L=1109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 5986.15 // Query: T316709_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 5870.00 // Query: T316709_3 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.54 # Mc/sec: 5870.00 // Query: T377439_1 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-122 407.6 22.1 5e-108 361.1 10.2 2.3 2 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.2 4.0 2.3e-18 3.8e-14 1 121 [. 360 464 .. 360 468 .. 0.85 2 ! 361.1 10.2 3.1e-112 5e-108 146 367 .. 471 694 .. 470 695 .. 0.99 Alignments for each domain: == domain 1 score: 52.2 bits; conditional E-value: 2.3e-18 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX...... CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkeliesk...akelealkekeentekqlkiikekq 92 +Gkk+ rk +nsk +++s+P+ke ss Pa e+++++ df+elr+e+++ ++++elke+++++ ak+le k ++e + i k T377439_1 360 MGKKQ---SRKAENSKNQSTSPPPKECSSLPAM--EQSWMESDFDELREEGFRGSNFSELKEEVRTQ*k*AKNLE--KRLDEWLTRMTSIE--KS 445 79999...9************************..*******************************999999875..77888666666632..22 PP ............XXXXXXXXXXXXXXXXX CS Transposase_22 93 entskqvmemnkellelktkvdelkkeqs 121 ++l+elkt + el++e+ T377439_1 446 ----------LNDLMELKTMAGELHDECT 464 ..........2367888888888887775 PP == domain 2 score: 361.1 bits; conditional E-value: 3.1e-112 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESS CS Transposase_22 146 deleervsaaedeieeidrevkerekrkkileqslqviq.dtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPn 239 d+leervs +e +i+e+++e k+rekr+k++eqs+q+ d +krPnlrliGv+ese e+++klen+l++ii+enfP l+++an++iqei+ P+ T377439_1 471 DQLEERVSVIEGQINEMKQEEKFREKRVKRNEQSFQE-I*DCMKRPNLRLIGVPESEGENGTKLENTLQDIIQENFPKLARQANIQIQEIQGMPQ 564 89**********************************9.5668***************************************************** PP SS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSH CS Transposase_22 240 rqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidk 334 r++s+ra++rh+ivr+tkv++k+k+l+a+rekGrvt kGkPirltad+saetl+a rew+++++il+ek+fqPr++yP kls+i+ Geik+f dk T377439_1 565 RYSSRRATPRHLIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADISAETLQATREWGPIFNILQEKNFQPRISYPVKLSFISVGEIKYFTDK 659 *********************************************************************************************** PP HHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 335 tklrdylstrPalkrllke..knerkdryqaleqa 367 ++lrd+++trPalk+llke ++er+++yq+l+++ T377439_1 660 QMLRDFVTTRPALKELLKEalNMERNNQYQSLQKH 694 *********************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 580 (0.0355697); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 8733.33 // Query: T377439_2 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.55 # Mc/sec: 8728.13 // Query: T377439_3 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-43 148.3 1.2 2.1e-43 148.3 1.2 1.8 2 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.2 0.1 1.6e+03 179 206 .. 998 1027 .. 990 1045 .. 0.82 2 ! 148.3 1.2 1.3e-47 2.1e-43 18 222 .] 1256 1490 .. 1254 1490 .. 0.95 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.1 H..HHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 179 e..lqelleaveewlkesglkinpeKtklv 206 + q+l++++++ ++ +++n++K k T377439_3 998 DttYQNLWDTFKAVCRVKFIELNAHKRKQE 1027 245999********************8865 PP == domain 2 score: 148.3 bits; conditional E-value: 1.3e-47 -THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET............. CS RVT_1 18 dykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflst 111 +k+l+k++a+r+++ ++kl++++ +gf p + + ++ +++++ ++ k k+++++++D +kaFd+++ +++l++l++++++ + +++i++++ + T377439_3 1256 ECKILSKILANRIQQNMKKLFHHDPVGFIPEMQGWFNIcksiNVIQHVNRTKDKNHMIISIDAEKAFDKIQQPFILKTLNKLGIDGTYLKIIRAIYDK 1353 69***************************************99999999999999******************************************* PP ............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BE CS RVT_1 112 rsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelqelleaveewlkesglkin 199 +++++ +ng++ e ++ k+g++qG++lSP+lfn++++ l r +r++ ++v+l+++aDD++++ +s ++q+ll+ ++++ k sg+kin T377439_3 1354 PTANIILNGQKLEAFPLKTGTRQGCPLSPFLFNIVLEVLARAIRQEKeikgiqlgkEEVKLSLFADDMIVYLESpIVSAQNLLKLISNFRKVSGYKIN 1451 **********99*********************************99***************************6677******************** PP GGG-EEE.....................ESSEEETTEEE CS RVT_1 200 peKtklvlf...........sg.....kseevkyLGvtl 222 +K +++l+ s+ s+++kyLG++l T377439_3 1452 VQKLQAFLYtnnrqtesqimSElpftiASKRIKYLGIQL 1490 *******99999988877761156678*********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1172 (0.0718754); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 8572.27 // Query: T317355_1 [L=2782] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2782 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14212.19 // Query: T317355_2 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 55 (0.00337299); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13957.84 // Query: T317355_3 [L=2781] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2781 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.26s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 14207.09 // Query: T035299_1 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.55 # Mc/sec: 7282.11 // Query: T035299_2 [L=1400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.57 # Mc/sec: 6905.45 // Query: T035299_3 [L=1399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 6157.39 // Query: T113312_1 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 5490.79 // Query: T113312_2 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 4602.57 // Query: T113312_3 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4671.27 // Query: T026661_1 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 3709.38 // Query: T026661_2 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 3647.56 // Query: T026661_3 [L=764] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (764 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 3902.99 // Query: T275898_1 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1008 (0.0618177); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 221 (0.0135533); expected 16.3 (0.001) Passed Fwd filter: 61 (0.00374095); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.91u 0.52s 00:00:02.42 Elapsed: 00:00:00.86 # Mc/sec: 2731.09 // Query: T275898_2 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 926 (0.0567889); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 32 (0.00196247); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.79 # Mc/sec: 2973.09 // Query: T275898_3 [L=821] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (821 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1390 (0.0852447); expected 326.1 (0.02) Passed bias filter: 397 (0.0243469); expected 326.1 (0.02) Passed Vit filter: 264 (0.0161904); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.31s 00:00:01.89 Elapsed: 00:00:00.77 # Mc/sec: 3050.31 // Query: T352795_1 [L=5618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 609 (0.0373482); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.42s 00:00:02.79 Elapsed: 00:00:00.96 # Mc/sec: 16741.82 // Query: T352795_2 [L=5618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 860 (0.0527413); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.15u 0.42s 00:00:02.57 Elapsed: 00:00:00.82 # Mc/sec: 19600.17 // Query: T352795_3 [L=5617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5617 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.47s 00:00:02.66 Elapsed: 00:00:00.93 # Mc/sec: 17278.80 // Query: T070678_1 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.61 # Mc/sec: 5219.84 // Query: T070678_2 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 88 (0.00539679); expected 326.1 (0.02) Passed bias filter: 45 (0.00275972); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 5131.04 // Query: T070678_3 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.62 # Mc/sec: 5131.04 // Query: T352771_1 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.71 # Mc/sec: 4694.18 // Query: T352771_2 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.65 # Mc/sec: 5127.49 // Query: T352771_3 [L=1165] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1165 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.71 # Mc/sec: 4694.18 // Query: T089736_1 [L=3542] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3542 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.71 # Mc/sec: 14271.92 // Query: T089736_2 [L=3541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.78 # Mc/sec: 12987.43 // Query: T089736_3 [L=3541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:00.73 # Mc/sec: 13876.98 // Query: T179750_1 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 3903.65 // Query: T179750_2 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 3903.65 // Query: T179750_3 [L=845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 12.8 0.5 0.21 10.7 0.5 2.2 1 DUF3678 Protein of unknown function (DUF3678) Domain annotation for each model (and alignments): >> DUF3678 Protein of unknown function (DUF3678) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.5 1.3e-05 0.21 13 25 .. 363 381 .. 357 384 .. 0.76 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 1.3e-05 DUF3678 13 a......sSSSssmlHrql 25 +SSSss++H ++ T179750_3 363 KeswllfPSSSSSPSHQRR 381 45555669*********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (845 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 3719.08 // Query: T184927_1 [L=4442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.36s 00:00:01.89 Elapsed: 00:00:00.76 # Mc/sec: 16720.80 // Query: T184927_2 [L=4442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 309 (0.0189501); expected 326.1 (0.02) Passed bias filter: 51 (0.00312768); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.50u 0.40s 00:00:01.90 Elapsed: 00:00:00.77 # Mc/sec: 16503.65 // Query: T184927_3 [L=4442] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-06 27.7 0.3 2.8e-06 26.7 0.3 1.6 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.3 1.7e-10 2.8e-06 1 16 [. 675 690 .. 675 693 .. 0.94 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 1.7e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T184927_3 675 SFVGTWMKLETIILSK 690 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4442 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:00.67 # Mc/sec: 18966.88 // Query: T035268_1 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.67 # Mc/sec: 4679.81 // Query: T035268_2 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 89 (0.00545811); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.64 # Mc/sec: 4899.17 // Query: T035268_3 [L=1096] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1096 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.76 # Mc/sec: 4125.62 // Query: T369379_1 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.55 # Mc/sec: 2481.12 // Query: T369379_2 [L=477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.21 11.6 1.1 0.53 10.3 1.1 1.6 1 Caerin_1 Caerin 1 protein Domain annotation for each model (and alignments): >> Caerin_1 Caerin 1 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 1.1 3.3e-05 0.53 13 22 .. 466 475 .. 456 476 .. 0.86 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 3.3e-05 Caerin_1 13 lLPHVvPVIA 22 lLPH vPVIA T369379_2 466 LLPHWVPVIA 475 8********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.57 # Mc/sec: 2352.79 // Query: T369379_3 [L=476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 2127.74 // Query: T368850_1 [L=1064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.048 13.7 0.0 0.5 10.4 0.0 2.1 2 Lipocalin Lipocalin / cytosolic fatty-acid binding protein f Domain annotation for each model (and alignments): >> Lipocalin Lipocalin / cytosolic fatty-acid binding protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 3.1e-05 0.5 2 68 .. 87 153 .. 86 161 .. 0.91 2 ? 0.6 0.0 0.033 5.4e+02 74 115 .. 182 221 .. 172 244 .. 0.67 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 3.1e-05 EEEEEEEEEESSGGHHCCCHTTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEEEESSTTEEEE CS Lipocalin 2 GkWyliasandnsefeeeekklrvyiaeikpteegnlevteiekdggkceeesitakkteepgklgv 68 G+W + +a++ ++ + +lr+ ++i ++g++ ++ + k g c+e++it++ t+ +g++ T368850_1 87 GRWLTLQLAANHADLVSPADPLRLALHSIRTRDGGDVDFVLFWKGEGVCKETNITVHPTQLQGQYQG 153 9*****************************55*******999888889*************999975 PP == domain 2 score: 0.6 bits; conditional E-value: 0.033 TTEEEEEEEEEESSSEEEEEEEEECTTE.EEEEEEEEESSSSE CS Lipocalin 74 ldgrkvkvlttdydnylilylkkdkegk.ttlvaellsrdpel 115 +++ +v ++tdy + lily+ + +++ t+l + l +r T368850_1 182 GGSMHVCFVSTDY-SNLILYVRFE-DDEiTNLWVLL-ARRMLE 221 677799999****.7778887776.33434444444.666444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 5636.89 // Query: T368850_2 [L=1064] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1064 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 460 (0.0282105); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 46 (0.00282105); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.61 # Mc/sec: 4990.04 // Query: T368850_3 [L=1063] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1063 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.55 # Mc/sec: 5529.20 // Query: T182380_1 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.73 # Mc/sec: 6525.04 // Query: T182380_2 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.79 # Mc/sec: 6025.85 // Query: T182380_3 [L=1664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.83 # Mc/sec: 5735.45 // Query: T058839_1 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.68 # Mc/sec: 2793.52 // Query: T058839_2 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.64 # Mc/sec: 2968.11 // Query: T058839_3 [L=664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 47.3 0.0 2.4e-12 46.7 0.0 1.4 1 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain Domain annotation for each model (and alignments): >> Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.7 0.0 1.5e-16 2.4e-12 17 74 .] 168 225 .. 152 225 .. 0.88 Alignments for each domain: == domain 1 score: 46.7 bits; conditional E-value: 1.5e-16 EETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGCHHHH.HHHHHGGEEEEEC CS Cyt-b5 17 airgkVYDvskflsehpGgesvilkyaGkDateafksvvhsekda.ekllkkylvGkla 74 +i+ kVY+vs+++++hpGg++v+++ aG+Da + f ++ h e d+ + +lk +l+G+la T058839_3 168 VINCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAM-HPELDIvQLYLKPLLIGELA 225 69************************************.7777662666888****985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.62 # Mc/sec: 3063.86 // Query: T088762_1 [L=6446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.95u 0.42s 00:00:02.37 Elapsed: 00:00:00.83 # Mc/sec: 22217.96 // Query: T088762_2 [L=6446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6446 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.48s 00:00:02.42 Elapsed: 00:00:00.88 # Mc/sec: 20955.58 // Query: T088762_3 [L=6445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.37s 00:00:02.34 Elapsed: 00:00:00.84 # Mc/sec: 21950.06 // Query: T159790_1 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 4229.94 // Query: T159790_2 [L=828] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (828 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 4229.94 // Query: T159790_3 [L=827] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (827 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.55 # Mc/sec: 4301.65 // Query: T165139_1 [L=3215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 509 (0.0312155); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.38s 00:00:01.72 Elapsed: 00:00:00.72 # Mc/sec: 12774.40 // Query: T165139_2 [L=3215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.80 # Mc/sec: 11496.96 // Query: T165139_3 [L=3215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-07 29.5 0.7 4.9e-07 28.8 0.7 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 6.1 5.8 10.0 21 4.0 2.4 2.3 2 DUF2981 Protein of unknown function (DUF2981) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 0.7 6.1e-11 4.9e-07 260 352 .. 2767 2856 .. 2761 2868 .. 0.79 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 6.1e-11 HHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTT.EEEEESSSSEEEESSHHHHHHHHTT-HHHHHHH CS Transposase_22 260 nkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPa.klsiiidGeikvfidktklrdylstrPalkrll 351 nk k rekG +t + +r ++d+s+et+ a+ +w++++q+lke+ +q k ++ + f dk++l++ strP k++l T165139_3 2767 NKGKETTLRREKGTMTSEER-VRPSSDFSTETMTAKTQWSEIFQVLKENTLQTWKNM-P*KYALKNESKNPGFSDKKMLKE--STRPITKEVL 2855 555555667*******9876.9******************************86554.24456677778888999999987..7888888887 PP T CS Transposase_22 352 k 352 T165139_3 2856 P 2856 4 PP >> DUF2981 Protein of unknown function (DUF2981) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 2.4 0.0026 21 211 242 .. 968 999 .. 948 1010 .. 0.64 2 ? 3.6 4.5 0.0035 28 199 245 .. 1006 1050 .. 986 1054 .. 0.66 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.0026 DUF2981 211 nsgntansvnntpnsvdntanssdntsnsvnn 242 nta s nt s nta s nt+ s n T165139_3 968 SYRNTARSCRNTARSYRNTAGSCRNTAGSYRN 999 44566666666666666666666666666554 PP == domain 2 score: 3.6 bits; conditional E-value: 0.0035 DUF2981 199 dnpdgkvaakdvnsgntansvnntpnsvdntanssdntsnsvnnkks 245 + p+ + +a+ s nta+s nt s n a s nt+ s n s T165139_3 1006 NSPESRNTAR--SSRNTAQSYRNTARSYRNMARSCRNTARSYRNTES 1050 3466666665..57889999999999999999999999988888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 475 (0.0291304); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:00.72 # Mc/sec: 12774.40 // Query: T149369_1 [L=2424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.80 # Mc/sec: 8668.31 // Query: T149369_2 [L=2424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.27s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 9767.12 // Query: T149369_3 [L=2424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.5 8.8 5.6 4.4 7.3 5.6 1.7 1 TSGP1 Tick salivary peptide group 1 Domain annotation for each model (and alignments): >> TSGP1 Tick salivary peptide group 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.6 0.00027 4.4 74 115 .. 2183 2224 .. 2179 2228 .. 0.80 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.00027 TSGP1 74 GeCylatvssdkPkdsddgdpaetekpkkkkkkekktkkkke 115 C+l t + kP+ + ++p+e + kk+kke+k++kkk+ T149369_3 2183 HRCHLGTLEEAKPSSCSKTTPQEAKLKVKKRKKERKKEKKKP 2224 58*********************9977677676666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2424 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 225 (0.0137986); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.64 # Mc/sec: 10835.39 // Query: T381562_1 [L=4093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.86 # Mc/sec: 13615.55 // Query: T381562_2 [L=4093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.38u 0.32s 00:00:01.70 Elapsed: 00:00:00.74 # Mc/sec: 15823.48 // Query: T381562_3 [L=4092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.33s 00:00:01.82 Elapsed: 00:00:00.69 # Mc/sec: 16965.97 // Query: T001161_1 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 4510.28 // Query: T001161_2 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.54 # Mc/sec: 5345.51 // Query: T001161_3 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.56 # Mc/sec: 5149.49 // Query: T124854_1 [L=801] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (801 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45 # Mc/sec: 5092.28 // Query: T124854_2 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.50 # Mc/sec: 4577.33 // Query: T124854_3 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.73 # Mc/sec: 3135.16 // Query: T000463_1 [L=3621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 462 (0.0283331); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.42s 00:00:02.00 Elapsed: 00:00:00.82 # Mc/sec: 12633.01 // Query: T000463_2 [L=3620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 427 (0.0261867); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.76 # Mc/sec: 13626.58 // Query: T000463_3 [L=3620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.70 # Mc/sec: 14794.58 // Query: T295732_1 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.64 # Mc/sec: 4948.34 // Query: T295732_2 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 5859.40 // Query: T295732_3 [L=1106] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1106 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 5455.31 // Query: T221920_1 [L=1819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 7541.81 // Query: T221920_2 [L=1819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 7766.94 // Query: T221920_3 [L=1819] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.2 8.9 0.033 14.0 8.9 1.5 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 8.9 2e-06 0.033 34 75 .. 1319 1360 .. 1309 1374 .. 0.85 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2e-06 Lamprin 34 gflghpvgglgygglgygglgvaglgvaglgygglgypgaal 75 g +g v gl lg+ lg+aglgv g gy glg g+ + T221920_3 1319 GCVGLGVAGLDTAELGWAWLGWAGLGVVGHGYVGLGVAGCGV 1360 788999******************************998654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1819 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.75 # Mc/sec: 6938.47 // Query: T175438_1 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.50 # Mc/sec: 7775.74 // Query: T175438_2 [L=1359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.3 7.6 7.6 5.4 6.9 7.6 1.2 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 7.6 0.00033 5.4 80 120 .. 1261 1301 .. 1252 1325 .. 0.51 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00033 Trypan_PARP 80 tepeeegeeetepeeeeepepepetepepepepepepepep 120 + p + + + + p + + p p p p p p p p p T175438_2 1261 PSPSPSPSPSPSPSPSPSPSPSPSRSPSPSRSPSPSRSPSP 1301 23333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 546 (0.0334846); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.48 # Mc/sec: 8099.72 // Query: T175438_3 [L=1358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 408 (0.0250215); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 7471.17 // Query: T165131_1 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1156 (0.0708941); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 92 (0.00564209); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:00.71 # Mc/sec: 2876.95 // Query: T165131_2 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.7 7.8 51.7 2.6 7.9 0.3 11.6 12 PELOTA_1 PELOTA RNA binding domain Domain annotation for each model (and alignments): >> PELOTA_1 PELOTA RNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.3 0.023 3.8e+02 34 54 .. 122 142 .. 106 153 .. 0.66 2 ? 3.0 0.5 0.0054 88 37 66 .. 146 175 .. 138 185 .. 0.79 3 ? 2.6 2.2 0.007 1.1e+02 38 66 .. 200 228 .. 171 241 .. 0.68 4 ? 3.7 0.3 0.0031 50 37 66 .. 221 250 .. 214 256 .. 0.83 5 ? 4.2 0.2 0.0023 37 37 61 .. 264 288 .. 253 299 .. 0.65 6 ? 0.9 0.2 0.024 3.9e+02 40 65 .. 299 323 .. 289 331 .. 0.55 7 ? 5.9 0.6 0.00065 11 37 69 .. 327 359 .. 319 368 .. 0.82 8 ? 1.5 0.8 0.015 2.4e+02 59 66 .. 401 408 .. 370 440 .. 0.60 9 ? 0.3 0.3 0.035 5.8e+02 38 63 .. 431 455 .. 413 464 .. 0.65 10 ? 7.9 0.3 0.00016 2.6 37 68 .. 472 503 .. 464 509 .. 0.87 11 ? 0.9 0.1 0.023 3.8e+02 37 55 .. 515 533 .. 505 546 .. 0.62 12 ? 5.9 0.5 0.00066 11 37 63 .. 557 583 .. 539 591 .. 0.54 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.023 PELOTA_1 34 LRRvPekvlvrdeeepdlahl 54 L +P+++l+r+ ++p++ ++ T165131_2 122 LVNTPKHILIRHLNTPQHILI 142 444566666666666665544 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0054 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P++ l+r+ ++p++ ++++L k++ ++ T165131_2 146 TPKHTLIRHLNTPKHILIRHLNTPKHILIR 175 588899999999999999999888887665 PP == domain 3 score: 2.6 bits; conditional E-value: 0.007 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgvpve 66 P+++l+r ++p++ +++lL k++ ++ T165131_2 200 PKHILIRLLNTPKHILIRLLNTPKHILIR 228 55555555555555555555555555443 PP == domain 4 score: 3.7 bits; conditional E-value: 0.0031 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpve 66 +P+++l+r ++p++ ++++L k++ ++ T165131_2 221 TPKHILIRLLNTPKHILIRHLNTPKHILIR 250 699999999999999999999999988765 PP == domain 5 score: 4.2 bits; conditional E-value: 0.0023 PELOTA_1 37 vPekvlvrdeeepdlahlllLakek 61 +P+++l+r+ ++p+ ++++L + T165131_2 264 TPKHILIRHLNTPKYILIRHLNTPQ 288 5677777777777777777766555 PP == domain 6 score: 0.9 bits; conditional E-value: 0.024 PELOTA_1 40 kvlvrdeeepdlahlllLakekgvpv 65 ++l+r + +p++ ++++L k++ + T165131_2 299 HILIRLN-TPKHILIRHLNTPKHILI 323 4554433.444444555544444433 PP == domain 7 score: 5.9 bits; conditional E-value: 0.00065 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveevp 69 +P+++l+r ++p+++++++L k++ +++ + T165131_2 327 TPKHILIRLLNTPKHTLIRHLNTPKHILIRHLN 359 699999999999999999999999999887654 PP == domain 8 score: 1.5 bits; conditional E-value: 0.015 PELOTA_1 59 kekgvpve 66 k++ ++ T165131_2 401 TPKHILIN 408 44443333 PP == domain 9 score: 0.3 bits; conditional E-value: 0.035 PELOTA_1 38 PekvlvrdeeepdlahlllLakekgv 63 P+++l+r + +p++ ++++L k++ T165131_2 431 PKHILIRLN-TPKHILIRHLNTPKHI 455 555555543.4555555555555554 PP == domain 10 score: 7.9 bits; conditional E-value: 0.00016 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgvpveev 68 +P+++l+r+ ++p+++++++L k++ + + T165131_2 472 TPKHILIRHLNTPKHTLIRHLNTPKHILISHL 503 79***********************9988765 PP == domain 11 score: 0.9 bits; conditional E-value: 0.023 PELOTA_1 37 vPekvlvrdeeepdlahll 55 +P+++l+r+ ++p++ +++ T165131_2 515 TPKHILIRHLNTPKHILIR 533 5777777777776654443 PP == domain 12 score: 5.9 bits; conditional E-value: 0.00066 PELOTA_1 37 vPekvlvrdeeepdlahlllLakekgv 63 +P+++l+r ++p+++++++L k++ T165131_2 557 TPKHILIRLLNTPKHTLIRHLNTPKHI 583 355555555555555555555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.63 # Mc/sec: 3242.27 // Query: T165131_3 [L=714] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (714 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1537 (0.0942598); expected 326.1 (0.02) Passed bias filter: 339 (0.0207899); expected 326.1 (0.02) Passed Vit filter: 270 (0.0165583); expected 16.3 (0.001) Passed Fwd filter: 59 (0.0036183); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.45s 00:00:03.28 Elapsed: 00:00:00.75 # Mc/sec: 2723.51 // Query: T302106_1 [L=1602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1602 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1137 (0.0697289); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.59 # Mc/sec: 7767.88 // Query: T302106_2 [L=1601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 992 (0.0608365); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.55 # Mc/sec: 8327.62 // Query: T302106_3 [L=1601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1601 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1136 (0.0696676); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 42 (0.00257574); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.57 # Mc/sec: 7896.88 // Query: T268416_1 [L=4194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-18 64.4 0.0 1.7e-17 63.6 0.0 1.4 1 rve Integrase core domain 1.6e-10 40.9 0.1 2.7e-10 40.1 0.1 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 4.4e-10 39.2 0.6 1.1e-09 37.9 0.6 1.7 1 Integrase_Zn Integrase Zinc binding domain 3.8e-05 22.7 0.5 9.5e-05 21.5 0.5 1.7 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.6 0.0 4.3e-21 1.7e-17 3 118 .. 3103 3213 .. 3102 3214 .. 0.94 Alignments for each domain: == domain 1 score: 63.6 bits; conditional E-value: 4.3e-21 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpg 100 +p +lwq+Dvt+++ + g+ ay++v + fs++++ + s e ++ v + l + +a g p ++ Dn++ yts+a+++f + +++++ + p+ T268416_1 3103 EPKSLWQMDVTHVP--SFGRLAYVHVCVGPFSHFVWYTCQSGE-SSACVKHHLLQCFAMMGI--PAYIKKDNAPGYTSQALATFFSVWDTKHIISIPY 3195 699***********..56777**********************.888888888889****99..9********************************* PP rve 101 rpqdnGkvErfnrtlkde 118 ++q +++vEr+n l+++ T268416_1 3196 NSQGQAIVERMNLSLEQQ 3213 ************999886 PP >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.1 0.1 6.7e-14 2.7e-10 117 165 .. 3462 3510 .. 3455 3513 .. 0.91 Alignments for each domain: == domain 1 score: 40.1 bits; conditional E-value: 6.7e-14 HERV-K_env_2 117 ipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqt 165 i k+ +vlvwe+c+a+ a +l+n+ +g iidw+p+g f nc+ q+ T268416_1 3462 IEPGQKKMNVLVWEDCIAEQAEMLHNDSYGIIIDWSPKGMFSLNCASQS 3510 55567999**************************************996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.9 0.6 2.7e-13 1.1e-09 1 37 [. 3050 3086 .. 3050 3087 .. 0.94 Alignments for each domain: == domain 1 score: 37.9 bits; conditional E-value: 2.7e-13 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqs.CptCq 37 A+ +H+l+H+Na +L+++++it+++A++I+ + CptCq T268416_1 3050 ARHFHNLTHVNASGLKRRYSITWKEAKAII-Q*CPTCQ 3086 899***************************.8888887 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.5 2.3e-08 9.5e-05 4 49 .. 3268 3312 .. 3265 3313 .. 0.91 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.3e-08 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 v w+dl ++ W +++++grG++c P +++++w+P R +++ T268416_1 3268 LVCWRDLITKIWEI-GNIITWGRGYACGSPGLNQQPIWIPSRHLKP 3312 689*********84.69*************************9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 466 (0.0285784); expected 326.1 (0.02) Passed bias filter: 247 (0.0151478); expected 326.1 (0.02) Passed Vit filter: 31 (0.00190114); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.23u 0.30s 00:00:01.53 Elapsed: 00:00:00.53 # Mc/sec: 22638.34 // Query: T268416_2 [L=4194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-30 102.5 0.1 1.4e-29 101.5 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 1.5e-11 44.6 0.0 2.9e-11 43.6 0.0 1.4 1 RNase_H RNase H 0.0002 21.2 1.0 0.00035 20.4 1.0 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.5 0.1 2.5e-33 1.4e-29 2 66 .] 2711 2775 .. 2710 2775 .. 0.98 Alignments for each domain: == domain 1 score: 101.5 bits; conditional E-value: 2.5e-33 S-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHHH CS RVT_thumb 2 qklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaLe 66 k++++rd+lktLNDfQkLlgdINWi+p lgi+t+ L++LF+iLrGd++lt prqLT+eAe++L+ T268416_2 2711 RKVTIHRDQLKTLNDFQKLLGDINWIQPALGIPTYALSNLFSILRGDPSLTGPRQLTKEAEAELQ 2775 689************************************************************97 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.6 0.0 5.3e-15 2.9e-11 36 141 .. 2945 3046 .. 2925 3047 .. 0.79 Alignments for each domain: == domain 1 score: 43.6 bits; conditional E-value: 5.3e-15 EECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHH...HHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS... CS RNase_H 36 pleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrw...kknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd... 127 +++ ++++++aEL Avie+L a d +n+++DS+Yvv+ tq ++++ + +++ + + ++ + ++ + + ++++h+++H+ T268416_2 2945 QTP-CTSAQKAELVAVIEVLTA--FDMPINVISDSSYVVH-STQLIENAql*FHTDEQLMTLF-----TQFQTAV--RSRMHPFYITHIRAHTPFpgp 3031 455.99****************..8999************.8888998755523333333223.....2344444..456899*********999888 PP .CHHHHHHHHHHHHH CS RNase_H 128 .pkgNemaDrlAkea 141 +++N+maD+l+ +a T268416_2 3032 lTEENQMADHLVANA 3046 889********9875 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 1.0 6.5e-08 0.00035 28 87 .] 3353 3412 .. 3352 3412 .. 0.90 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 6.5e-08 HERV-K_REC 28 epptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 +pptw q+kkl+q++ l + t +++a + ++++ + + ++ +++y+a T268416_2 3353 QPPTWGQIKKLSQMSEENLRKAGQPVTMSNLMVAMIAVITIAMSIPSTRADTENNYTYWA 3412 7***************99999998889888899988999999999999999999*****7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 177 (0.0108549); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.55 # Mc/sec: 21815.13 // Query: T268416_3 [L=4193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-21 76.6 0.1 2.7e-21 75.6 0.1 1.6 1 RVP Retroviral aspartyl protease 6.8e-16 58.0 0.0 1.2e-15 57.2 0.0 1.2 1 dUTPase dUTPase 8.6e-09 35.1 0.4 1.5e-08 34.3 0.4 1.4 1 G-patch G-patch domain ------ inclusion threshold ------ 0.034 14.6 0.0 0.058 13.8 0.0 1.3 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.6 0.1 6.5e-25 2.7e-21 2 100 .. 2463 2560 .. 2462 2561 .. 0.97 Alignments for each domain: == domain 1 score: 75.6 bits; conditional E-value: 6.5e-25 SSSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-E CS RVP 2 eqrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvr 99 +++P +++ i+gk++++l+DtGAd+++is +++P +w ++ a+ ++ G+g+ e++qs++i+++ + + g+++p+i++ +p+nl+ rdlLq++g++ T268416_3 2463 DKHPTCEITIQGKKFKGLVDTGADISIISLQHWPSTWSIHPAQFNIVGVGKPPEVYQSSYILHCEGPGGQPGTIQPIITS-VPINLWRRDLLQQWGAQ 2559 578*****************************************************************************.***************98 PP E CS RVP 100 L 100 + T268416_3 2560 V 2560 5 PP >> dUTPase dUTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.2 0.0 2.8e-19 1.2e-15 7 106 .. 2335 2433 .. 2330 2451 .. 0.87 Alignments for each domain: == domain 1 score: 57.2 bits; conditional E-value: 2.8e-19 BESSTT-SSEEEE-SSSEEEET.TEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEE CS dUTPase 7 trkspesAgyDlsaakdltvkp.getvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifar 103 +++sA Dl+ +k + + p + + +pt+++ ++p+g l+l+RS+l++k + v +gvids y+Ge+++v+ +t+ + k + g+RiAqL++++ T268416_3 2335 SATTAGSAAVDLCCTKAVSLLPgEPPQKIPTGVCGPMPAGRIRLLLGRSSLNMKDVQVQTGVIDSYYNGEIQIVI--STSVPWKAEPGERIAQLLIVP 2430 567899****************7789*******************************************888887..68899**************99 PP BEC CS dUTPase 104 ilt 106 +++ T268416_3 2431 YVE 2433 988 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.3 0.4 3.6e-12 1.5e-08 4 44 .. 2570 2610 .. 2567 2611 .. 0.94 Alignments for each domain: == domain 1 score: 34.3 bits; conditional E-value: 3.6e-12 G-patch 4 iGvkmLqkmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 + m+ mG+ +G+GLGk+ q +eP++ +++ r GlG+ T268416_3 2570 RSQHMMHEMGYVPGMGLGKHLQVLKEPLQLERQSSRQGLGY 2610 5678************************************8 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 1.4e-05 0.058 2 25 .. 2469 2492 .. 2468 2498 .. 0.92 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 1.4e-05 EEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 2 evtingkpvkflvDTGAsstiise 25 e+ti+gk++k lvDTGA+ +iis T268416_3 2469 EITIQGKKFKGLVDTGADISIISL 2492 689*******************95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 164 (0.0100576); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.21u 0.27s 00:00:01.48 Elapsed: 00:00:00.56 # Mc/sec: 21420.46 // Query: T184392_1 [L=8959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8959 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 719 (0.0440942); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 58 (0.00355697); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.04u 0.48s 00:00:03.52 Elapsed: 00:00:00.74 # Mc/sec: 34635.37 // Query: T184392_2 [L=8958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 8.5 12.3 1.8 7.8 12.3 1.2 1 SelP_N Selenoprotein P, N terminal region Domain annotation for each model (and alignments): >> SelP_N Selenoprotein P, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.3 0.00011 1.8 181 207 .. 4832 4858 .. 4802 4881 .. 0.60 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00011 SelP_N 181 ktehehahshkqghkhhekhghhHkek 207 + +++h+h++ h+hh +h+hhH+++ T184392_2 4832 PPPSPSPHHHTHHHQHHPHHHHHHHHH 4858 333444555555555555555555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 982 (0.0602232); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.78u 0.41s 00:00:03.19 Elapsed: 00:00:00.68 # Mc/sec: 37687.23 // Query: T184392_3 [L=8958] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8958 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.35s 00:00:02.39 Elapsed: 00:00:00.67 # Mc/sec: 38249.72 // Query: T178263_1 [L=853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4692.86 // Query: T178263_2 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 4779.27 // Query: T178263_3 [L=852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.1 17.0 5.3 6.6 0.5 4.8 4 PT PT repeat Domain annotation for each model (and alignments): >> PT PT repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.7 0.00091 15 2 22 .. 471 491 .. 469 493 .. 0.56 2 ? 1.3 0.4 0.014 2.3e+02 5 11 .. 529 535 .. 526 539 .. 0.46 3 ? 2.3 0.1 0.0068 1.1e+02 21 30 .. 555 564 .. 548 566 .. 0.50 4 ? 6.6 0.5 0.00032 5.3 6 30 .. 638 662 .. 635 668 .. 0.52 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.00091 PT 2 ptaqPtaqPTvqPTgqPtaqP 22 p+ +P++qP qP + +++ P T178263_3 471 PSTRPSTQPFIQPPNHLSNHP 491 555555555555555555544 PP == domain 2 score: 1.3 bits; conditional E-value: 0.014 PT 5 qPtaqPT 11 qP++qP+ T178263_3 529 QPSTQPS 535 2333332 PP == domain 3 score: 2.3 bits; conditional E-value: 0.0068 PT 21 qPTdqPtaqP 30 qP++ P+ P T178263_3 555 QPSNHPSIHP 564 3333333333 PP == domain 4 score: 6.6 bits; conditional E-value: 0.00032 PT 6 PtaqPTvqPTgqPtaqPTdqPtaqP 30 P+ +P+ qP+ P + P+ P+ P T178263_3 638 PSIHPSIQPSTHPFDHPSIHPSIHP 662 4444444444444444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 4687.36 // Query: T358155_1 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.54 # Mc/sec: 5870.00 // Query: T358155_2 [L=1108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 5980.75 // Query: T358155_3 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6090.27 // Query: T083621_1 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.51 # Mc/sec: 2238.18 // Query: T083621_2 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.50 # Mc/sec: 2282.94 // Query: T083621_3 [L=399] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2282.94 // Query: T260458_1 [L=2883] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2883 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.27s 00:00:01.29 Elapsed: 00:00:00.56 # Mc/sec: 14469.78 // Query: T260458_2 [L=2882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-10 39.4 0.0 1.2e-09 38.3 0.0 1.5 1 HMG_box HMG (high mobility group) box 0.0033 17.9 0.0 0.0063 17.0 0.0 1.3 1 HMG_box_2 HMG-box domain Domain annotation for each model (and alignments): >> HMG_box HMG (high mobility group) box # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.0 1.5e-13 1.2e-09 4 48 .. 127 171 .. 125 179 .. 0.95 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 1.5e-13 S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHCSHHHHHH CS HMG_box 4 plsafflfskeqraklkaenPelknaeiskklgekWkalseeeKk 48 p++ +++f++eqr +l+a +P+l +ei+k+l+ +W +ls+++K T260458_2 127 PTTGYMIFLNEQRSQLRATHPDLPFTEIMKMLAVQWAQLSQDKKG 171 899***************************************995 PP >> HMG_box_2 HMG-box domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 7.7e-07 0.0063 8 53 .. 128 172 .. 125 178 .. 0.91 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 7.7e-07 --HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHH CS HMG_box_2 8 rnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKek 53 + +Y++f e++ +l++ p ++ e++k + +W++ls++ K + T260458_2 128 TTGYMIFLNEQRSQLRAT-HPDLPFTEIMKMLAVQWAQLSQDKKGE 172 679***************.**********************99976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.57 # Mc/sec: 14215.37 // Query: T260458_3 [L=2882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 14215.37 // Query: T267168_1 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.62 # Mc/sec: 8167.21 // Query: T267168_2 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-27 96.4 2.0 2.2e-27 95.9 2.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 5.5e-07 28.9 0.1 1.1e-06 28.0 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.9 2.0 2.7e-31 2.2e-27 14 222 .] 724 961 .. 706 961 .. 0.90 Alignments for each domain: == domain 1 score: 95.9 bits; conditional E-value: 2.7e-31 ....-THHHHCTB--.............-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET....... CS RVT_1 14 llsvdykalnkliakrLkdvl....ekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinli 105 l+++++k+lnk++a+ + +kl+ ++q+gf pg +++ ++ ++ +++++ k k+ +++++D +kaF+++++++ l +l++++++++ +++ T267168_2 724 LMNINVKLLNKILAN----QI*qhiKKLIYHDQVGFIPGMQVWFNIsksiNVTHHINRTKDKNYMIISIDTEKAFNKIQHPFTL-TLNQLGIEETYLKIT 818 7899***********....334444***********************987777887788888*******************99.68999********** PP ..................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT CS RVT_1 106 ksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesg 195 ++++ ++++++ ng+ e + +g++q ++lSP+ f ++++ r +r++ ++v+l+++aDD++++ +++ +q+ l+ + + + g T267168_2 819 RAIYDKPTANIIRNGQMLEAFLLRTGTRQRCPLSPFPFYILLEIPARAIRQAKeikgiqigrEEVKLSLFADDMILYLENPIVlAQKFLQLINYFSNVLG 918 ****************88*********************************88***************************777699999****9****** PP --BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 196 lkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +kin +K+ + l+ ++ ++++kyLG++l T267168_2 919 YKINVQKSLASLYtnnsqaeskirKAipfttVTQKIKYLGIQL 961 ***********99999998887761155678*********986 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.0 0.1 1.4e-10 1.1e-06 1 15 [. 1431 1445 .. 1431 1447 .. 0.96 Alignments for each domain: == domain 1 score: 28.0 bits; conditional E-value: 1.4e-10 DUF1725 1 kFagKWMELEnIILS 15 +F+g+WMELE IILS T267168_2 1431 SFVGTWMELEAIILS 1445 7*************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.62 # Mc/sec: 8167.21 // Query: T267168_3 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 7911.98 // Query: T295986_1 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.24 11.4 0.7 37 4.3 0.0 3.6 4 DUF2161 Putative PD-(D/E)XK phosphodiesterase (DUF2161) Domain annotation for each model (and alignments): >> DUF2161 Putative PD-(D/E)XK phosphodiesterase (DUF2161) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.22 3.5e+03 53 69 .. 1047 1063 .. 1007 1067 .. 0.68 2 ? 4.3 0.0 0.0023 37 54 72 .. 1086 1104 .. 1080 1108 .. 0.87 3 ? -0.6 0.0 0.077 1.3e+03 55 73 .. 1162 1180 .. 1160 1182 .. 0.89 4 ? 2.0 0.0 0.012 1.9e+02 55 85 .. 1250 1280 .. 1247 1288 .. 0.86 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.22 DUF2161 53 vTaYreqalriaalLae 69 T Yre++l+ +L++ T295986_1 1047 HTSYRESVLHRVNMLHT 1063 47788888877777766 PP == domain 2 score: 4.3 bits; conditional E-value: 0.0023 DUF2161 54 TaYreqalriaalLaeege 72 T Yre+al++ +L++e++ T295986_1 1086 TSYRESALHCVNMLHTEDQ 1104 99************98754 PP == domain 3 score: -0.6 bits; conditional E-value: 0.077 DUF2161 55 aYreqalriaalLaeegel 73 Yr +al++ L++eg+ T295986_1 1162 SYRRSALHCVNTLHTEGQH 1180 6*************99876 PP == domain 4 score: 2.0 bits; conditional E-value: 0.012 DUF2161 55 aYreqalriaalLaeegelspaelkkatgee 85 Yre+al+ +L++eg +s+a +++a + e T295986_1 1250 SYRESALHRVNMLHTEGRVSTALCEHASCRE 1280 6*******************99988877654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 7220.39 // Query: T295986_2 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-05 24.3 0.0 2.3e-05 23.8 0.0 1.1 1 Serpin Serpin (serine protease inhibitor) Domain annotation for each model (and alignments): >> Serpin Serpin (serine protease inhibitor) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.8 0.0 1.4e-09 2.3e-05 315 366 .. 200 251 .. 199 254 .. 0.86 Alignments for each domain: == domain 1 score: 23.8 bits; conditional E-value: 1.4e-09 EEEESSSEEEEEEEEECCTTCS-SSEEEEEECSEEEEEEEETTTTEEEEEEE CS Serpin 315 fievnEeGteaaaatvatllskksspvefkvdrPFlflireektgliLFlGk 366 f+ev Ee t+aa a+ +t ++++s+ +f++ +P lf++++++t+++LF+G+ T295986_2 200 FMEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGR 251 789************5555555666668***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.64 # Mc/sec: 7558.85 // Query: T295986_3 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.64 # Mc/sec: 7558.85 // Query: T138122_1 [L=7389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1115 (0.0683797); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.53u 0.38s 00:00:03.90 Elapsed: 00:00:01.14 # Mc/sec: 18381.45 // Query: T138122_2 [L=7388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1326 (0.0813198); expected 326.1 (0.02) Passed bias filter: 346 (0.0212192); expected 326.1 (0.02) Passed Vit filter: 118 (0.0072366); expected 16.3 (0.001) Passed Fwd filter: 43 (0.00263707); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.90u 0.50s 00:00:04.40 Elapsed: 00:00:01.00 # Mc/sec: 21135.81 // Query: T138122_3 [L=7388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1221 (0.0748804); expected 326.1 (0.02) Passed bias filter: 332 (0.0203606); expected 326.1 (0.02) Passed Vit filter: 113 (0.00692996); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.06u 0.48s 00:00:04.53 Elapsed: 00:00:01.02 # Mc/sec: 20721.38 // Query: T156340_1 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 277 (0.0169876); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.35s 00:00:01.60 Elapsed: 00:00:00.64 # Mc/sec: 13731.98 // Query: T156340_2 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 323 (0.0198087); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.64 # Mc/sec: 13731.98 // Query: T156340_3 [L=3072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.72 # Mc/sec: 12206.21 // Query: T236378_1 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1027 (0.062983); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:00.76 # Mc/sec: 1622.39 // Query: T236378_2 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1119 (0.068625); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 53 (0.00325034); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.42s 00:00:01.66 Elapsed: 00:00:00.75 # Mc/sec: 1644.02 // Query: T236378_3 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 855 (0.0524347); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 16 (0.000981234); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.82 # Mc/sec: 1500.19 // Query: T137378_1 [L=241] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (241 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.62 # Mc/sec: 1112.03 // Query: T137378_2 [L=240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1125.57 // Query: T137378_3 [L=240] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (240 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 308 (0.0188888); expected 326.1 (0.02) Passed bias filter: 191 (0.0117135); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.54 # Mc/sec: 1271.48 // Query: T110164_1 [L=525] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (525 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 796 (0.0488164); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.47s 00:00:01.71 Elapsed: 00:00:00.79 # Mc/sec: 1901.18 // Query: T110164_2 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 680 (0.0417024); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.67 # Mc/sec: 2237.43 // Query: T110164_3 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 752 (0.046118); expected 326.1 (0.02) Passed bias filter: 196 (0.0120201); expected 326.1 (0.02) Passed Vit filter: 75 (0.00459953); expected 16.3 (0.001) Passed Fwd filter: 35 (0.00214645); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.42s 00:00:02.00 Elapsed: 00:00:00.83 # Mc/sec: 1806.11 // Query: T236376_1 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 8128.84 // Query: T236376_2 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.66 # Mc/sec: 8621.50 // Query: T236376_3 [L=1989] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1989 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.71 # Mc/sec: 8014.35 // Query: T160124_1 [L=3823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.031 13.9 1.2 0.096 12.3 1.2 1.9 1 zf-C3H1 Putative zinc-finger domain Domain annotation for each model (and alignments): >> zf-C3H1 Putative zinc-finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 1.2 5.9e-06 0.096 9 21 .. 3594 3606 .. 3593 3607 .. 0.91 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.9e-06 zf-C3H1 9 GvCnDdsCefQHF 21 ++C+ ++C +QHF T160124_1 3594 QTCPANTCNWQHF 3606 79*********** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.40u 0.36s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 15404.16 // Query: T160124_2 [L=3823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.72 # Mc/sec: 15190.21 // Query: T160124_3 [L=3823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.64u 0.42s 00:00:02.06 Elapsed: 00:00:00.81 # Mc/sec: 13502.41 // Query: T332060_1 [L=2917] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2917 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.71 # Mc/sec: 11753.58 // Query: T332060_2 [L=2916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.74 # Mc/sec: 11273.22 // Query: T332060_3 [L=2916] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-06 27.1 4.5 7.1e-06 25.7 4.5 1.8 1 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.098 12.2 1.8 0.098 12.2 0.2 1.9 2 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 4.5 8.7e-10 7.1e-06 2 18 .] 707 723 .. 706 723 .. 0.94 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 8.7e-10 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+CG+ GH+a++Cp+ T332060_3 707 ACYKCGKSGHRAKECPE 723 7***************6 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.1 0.88 7.1e+03 20 29 .. 587 596 .. 583 596 .. 0.82 2 ? 12.2 0.2 1.2e-05 0.098 30 48 .. 704 722 .. 703 723 .. 0.95 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 0.88 zf-CCHC_4 20 elwievkYEr 29 + +++kYE+ T332060_3 587 FRLFFIKYEK 596 5789*****8 PP == domain 2 score: 12.2 bits; conditional E-value: 1.2e-05 zf-CCHC_4 30 LprfCfiCgllGHsdkeCp 48 Lp C+ Cg GH +keCp T332060_3 704 LPGACYKCGKSGHRAKECP 722 899***************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2916 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.66 # Mc/sec: 12639.67 // Query: T124667_1 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.22s 00:00:00.88 Elapsed: 00:00:00.65 # Mc/sec: 4872.21 // Query: T124667_2 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 5460.24 // Query: T124667_3 [L=1107] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1107 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.66 # Mc/sec: 4798.39 // Query: T381585_1 [L=5182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 281 (0.0172329); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.37s 00:00:02.09 Elapsed: 00:00:00.74 # Mc/sec: 20033.54 // Query: T381585_2 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.052 13.6 0.0 0.098 12.7 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6e-06 0.098 18 53 .. 1651 1686 .. 1646 1690 .. 0.89 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381585_2 1651 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 1686 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.54u 0.35s 00:00:01.89 Elapsed: 00:00:00.67 # Mc/sec: 22122.33 // Query: T381585_3 [L=5181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.34s 00:00:02.16 Elapsed: 00:00:00.79 # Mc/sec: 18761.97 // Query: T124974_1 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.081 13.0 0.1 0.2 11.8 0.1 1.6 1 YjbE Exopolysaccharide production protein YjbE Domain annotation for each model (and alignments): >> YjbE Exopolysaccharide production protein YjbE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.1 1.2e-05 0.2 9 55 .. 214 266 .. 210 286 .. 0.80 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 1.2e-05 YjbE 9 ailvlaastsvsAApe.aGeAAGaqAs.....amsaGtseAvgigavaallGv 55 +++ a ts++ Ap +G AG+qA+ ++aG+ A+g aallG T124974_1 214 SVVSCQAETSIQTAPGqVGSRAGSQAGpqhpsQRTAGKPRALGREKRAALLGK 266 56777899*******99*********733222568899999999999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.60 # Mc/sec: 2069.33 // Query: T124974_2 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.61 # Mc/sec: 2030.72 // Query: T124974_3 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.62 # Mc/sec: 1997.97 // Query: T087296_1 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:00.71 # Mc/sec: 10677.75 // Query: T087296_2 [L=2650] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2650 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.70 # Mc/sec: 10830.28 // Query: T087296_3 [L=2649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.71 # Mc/sec: 10673.72 // Query: T090348_1 [L=1337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 5624.90 // Query: T090348_2 [L=1336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.57 # Mc/sec: 6589.77 // Query: T090348_3 [L=1336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-32 111.5 11.3 2.5e-32 110.7 11.3 1.3 1 Colipase-like Colipase-like Domain annotation for each model (and alignments): >> Colipase-like Colipase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.7 11.3 1.5e-36 2.5e-32 12 89 .] 232 308 .. 228 308 .. 0.97 Alignments for each domain: == domain 1 score: 110.7 bits; conditional E-value: 1.5e-36 Colipase-like 12 klngyeCskksEcksqcClknseskekfCkareiflqClklrkpneevCqkhkeclskcclkLrelseqrCvkrtgll 89 ++ngy+Cs++sEc+s+cC++n+ s++++C+++++flqC+++rkpn+++C++h+ec+s+cc++Lre+s +rC++rtg+l T090348_3 232 QPNGYRCSHDSECQSSCCVRNN-SPQELCTPQSVFLQCVPWRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGIL 308 79*******************9.99***************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 380 (0.0233043); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 5880.11 // Query: T157255_1 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.61 # Mc/sec: 1697.74 // Query: T157255_2 [L=362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.67 # Mc/sec: 1545.70 // Query: T157255_3 [L=361] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (361 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.63 # Mc/sec: 1639.30 // Query: T132260_1 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 364 (0.0223231); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.65 # Mc/sec: 2838.82 // Query: T132260_2 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.71 # Mc/sec: 2598.92 // Query: T132260_3 [L=644] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (644 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 339 (0.0207899); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.67 # Mc/sec: 2749.81 // Query: T270510_1 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.55 # Mc/sec: 2314.67 // Query: T270510_2 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.29 10.7 12.1 0.16 11.5 10.1 1.5 1 DUF4391 Domain of unknown function (DUF4391) 8.9 6.4 13.3 0.38 10.8 1.2 2.7 3 HR1 Hr1 repeat Domain annotation for each model (and alignments): >> DUF4391 Domain of unknown function (DUF4391) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 10.1 2e-05 0.16 96 241 .. 297 424 .. 266 424 .. 0.75 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 2e-05 DUF4391 96 vlsyddevllslahkRlnqadkgkivleeefitewlpedeeslelekasdieaafldalalknlpktdlkalYqelidklialeaarltgvfslndkedi 195 +ls+++ ++l l k+l q+ +++++l++ + + ++ + e+ + f+ ++ ++++ Yq+ d++ a+ g f + ++++ T270510_2 297 CLSDHSAIKLELRIKKLTQNCSTAWKLNNLLLNDYWVHNKMKAEI-------KMFF-------ETNENKDTTYQNHWDTFKAVCR----GKFIALNAHKR 378 567778999********************9998877322222222.......2344.......5788888888888888888877....88888555666 PP DUF4391 196 aerrerlreieelekeiaklkkklkkekqfnrkvelnlelkkleke 241 ++ r + +++++ ke++k ++ ++k+ ++ ++++elk+ e++ T270510_2 379 KQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKETETQ 424 6666777777777777777777799999999999999999998875 PP >> HR1 Hr1 repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.6 0.0069 56 28 53 .. 219 245 .. 202 247 .. 0.88 2 ? 10.8 1.2 4.6e-05 0.38 45 67 .. 379 401 .. 371 403 .. 0.86 3 ? -2.9 0.3 0.88 7.2e+03 48 63 .. 408 423 .. 405 428 .. 0.68 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0069 HR1 28 sk.ktqnkkvrqeaeselsesnskiel 53 k +t ++ +rq+++ +e ns +++ T270510_2 219 AKlSTLDRSMRQKVNKDTQELNSALQQ 245 566899****************99987 PP == domain 2 score: 10.8 bits; conditional E-value: 4.6e-05 HR1 45 sesnskielLreqLeelqasvqn 67 + +ski+ L++qL+el++++q+ T270510_2 379 KQERSKIDTLTSQLKELEKQEQT 401 56689**************9986 PP == domain 3 score: -2.9 bits; conditional E-value: 0.88 HR1 48 nskielLreqLeelqa 63 +++i +r +L+e + T270510_2 408 RQEITKIRAELKETET 423 6777788888877655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1788 (0.109653); expected 326.1 (0.02) Passed bias filter: 450 (0.0275972); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.69 # Mc/sec: 1845.03 // Query: T270510_3 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 92 (0.00564209); expected 326.1 (0.02) Passed bias filter: 40 (0.00245308); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.63 # Mc/sec: 2020.74 // Query: T006778_1 [L=1114] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1114 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 6013.14 // Query: T006778_2 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 5054.13 // Query: T006778_3 [L=1113] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1113 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.70 # Mc/sec: 4548.72 // Query: T142850_1 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 11838.63 // Query: T142850_2 [L=2276] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2276 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.51 # Mc/sec: 12767.16 // Query: T142850_3 [L=2275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2275 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 12279.98 // Query: T052985_1 [L=8852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.72u 0.34s 00:00:02.06 Elapsed: 00:00:00.63 # Mc/sec: 40196.93 // Query: T052985_2 [L=8852] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8852 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.30s 00:00:02.11 Elapsed: 00:00:00.63 # Mc/sec: 40196.93 // Query: T052985_3 [L=8851] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8851 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.84u 0.34s 00:00:02.18 Elapsed: 00:00:00.66 # Mc/sec: 38365.46 // Query: T259862_1 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 265 (0.0162517); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.23s 00:00:01.08 Elapsed: 00:00:00.48 # Mc/sec: 15233.92 // Query: T259862_2 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.52 # Mc/sec: 14062.08 // Query: T259862_3 [L=2556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2556 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 13541.26 // Query: T050829_1 [L=863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.50 # Mc/sec: 4937.79 // Query: T050829_2 [L=863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.52 # Mc/sec: 4747.88 // Query: T050829_3 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 111 (0.00680731); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5032.73 // Query: T095722_1 [L=370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 2205.22 // Query: T095722_2 [L=370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2160.22 // Query: T095722_3 [L=369] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.49 # Mc/sec: 2154.38 // Query: T125180_1 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 4120.70 // Query: T125180_2 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.51 # Mc/sec: 4201.49 // Query: T125180_3 [L=749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.49 # Mc/sec: 4372.98 // Query: T358919_1 [L=2285] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2285 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.25s 00:00:01.08 Elapsed: 00:00:00.53 # Mc/sec: 12333.96 // Query: T358919_2 [L=2284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.54 # Mc/sec: 12100.25 // Query: T358919_3 [L=2284] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-13 48.8 5.4 6.5e-06 26.1 2.2 3.3 3 Pentapeptide_4 Pentapeptide repeats (9 copies) Domain annotation for each model (and alignments): >> Pentapeptide_4 Pentapeptide repeats (9 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.8 0.0 0.0034 56 19 59 .. 266 306 .. 238 332 .. 0.40 2 ! 26.1 2.2 4e-10 6.5e-06 4 65 .. 336 397 .. 334 399 .. 0.95 3 ! 17.6 0.5 1.7e-07 0.0027 10 64 .. 402 456 .. 399 459 .. 0.78 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.0034 Pentapeptide_4 19 searlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFs 59 s+++l + ++++ ls+ +++ +ls ++ + l+ +s T358919_3 266 SSVTLSAWGLSSVTLSAWGLSSVTLSAWGLSSVTLSAWGLS 306 22222222222222222222222222222222222222222 PP == domain 2 score: 26.1 bits; conditional E-value: 4e-10 Pentapeptide_4 4 tncsfnncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlkn 65 +++++ +c+ls +++s++ l ++++ +++ls+v+ + c+ls+v ++ + l+r+++s+c l++ T358919_3 336 SSVTLSACCLSSMTLSACGLSSTTLFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSS 397 6899******************************************************9986 PP == domain 3 score: 17.6 bits; conditional E-value: 1.7e-07 Pentapeptide_4 10 ncklsnvnFsearlkdcnFteanlsnvnFdkcllsdvdfaeadlkrasFsgcdlk 64 +c ls+v++s+++l + + + + ls++++ c ls+ ++ ++l+++++s++ l+ T358919_3 402 ACGLSRVTLSACHLSSMTVSTCGLSSMTLFACGLSSMTLSACRLSNVTLSNFPLA 456 5778888888888888888888888888888888888888888888888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2284 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 12100.25 // Query: T185731_1 [L=1195] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1195 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 6703.32 // Query: T185731_2 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 6697.71 // Query: T185731_3 [L=1194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.52 # Mc/sec: 6568.91 // Query: T018797_1 [L=3619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-29 103.2 13.6 1.2e-29 103.2 13.6 3.2 3 CCDC144C CCDC144C protein coiled-coil region 8.9e-09 35.0 0.4 8.9e-09 35.0 0.4 2.2 2 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein ------ inclusion threshold ------ 0.44 10.4 18.6 0.012 15.5 1.1 2.5 2 Laminin_II Laminin Domain II Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 1.2 2.3e-05 0.13 96 143 .. 1524 1569 .. 1511 1570 .. 0.87 2 ! 103.2 13.6 2.3e-33 1.2e-29 184 304 .. 1608 1719 .. 1597 1720 .. 0.94 3 ? -6.8 20.5 3 1.6e+04 121 231 .. 2094 2208 .. 2065 2211 .. 0.78 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 2.3e-05 CCDC144C 96 yrsrLaaAiqdheqsqtskrdlelafq.rerdewlrlqdklnldvsnlk 143 ++srL+aAi+ h +s++++r+l+la++ +d +++q k+++d+s++ T018797_1 1524 HQSRLTAAISKHSESVKTERNLKLALE*T-QD--VSVQVKMSSDISEVE 1569 689**********************9554.57..89*********9976 PP == domain 2 score: 103.2 bits; conditional E-value: 2.3e-33 CCDC144C 184 vqrdlsqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQLedaqnkadnkektvidiqdqfqdivkkLqaesekqvllleernk 281 +dlsq+q+qike+++my+n+e+kvn+++gk ++eer++qlq+en ++qQL+d+++k d+ke +v++iq+ f es k+ ++lee+nk T018797_1 1608 SPNDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQRGF--------IESGKKDHMLEEKNK 1696 568**************************************************************.*********........*************** PP CCDC144C 282 eLinecnhl.kerlyqyekekaer 304 +L+nec+ ke+l++ye+ekaer T018797_1 1697 KLMNECD-H*KESLFRYEREKAER 1719 ******7.55589**********8 PP == domain 3 score: -6.8 bits; conditional E-value: 3 CCDC144C 121 fqrerdewlrlqdklnldvsnlkdknellsqqL...skaesklnsLenelhetrdaLrektlllEsvqrdlsqaqcqikeleqmyqneeekvnk.yig 214 + + d+ + ++ +++ nl ++n++++q+L +k++++ ++Le++ + +++++ + + +E+ +ls+ q + el++ ++ ek+++ +++ T018797_1 2094 VESQFDDLMAEKEAVSSKCVNLAKENQVFQQELlsmKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEiHLQ 2191 44555778888999999999999999999999844458899999999999999888777777889999999999999999977666666666552677 PP CCDC144C 215 kqesleerlsqlqsenl 231 +q ++ +l ql+++ + T018797_1 2192 EQAQYKKQLEQLNKDII 2208 88899999999987765 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 2.8 0.2 1.1e+03 33 67 .. 2127 2161 .. 2102 2208 .. 0.67 2 ! 35.0 0.4 1.6e-12 8.9e-09 185 228 .. 3266 3309 .. 3261 3315 .. 0.92 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.2 BAR_3_WASP_bdg 33 lDlqeveqkveafkkftkkmdesvkellevinefa 67 l +++v+q +e++++ k ++e++ +l++ +++ + T018797_1 2127 LSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSM 2161 56778888888888888888888888887775433 PP == domain 2 score: 35.0 bits; conditional E-value: 1.6e-12 BAR_3_WASP_bdg 185 svisyallaeinhfhserieDfksvmqlyLkqqvkfyqkiaekL 228 + is a+laei+hfh ++D+ s+mq++L+q + +qk++++L T018797_1 3266 NRISLATLAEIHHFHPIPVRDMDSQMQHFLQQEILLFQKVTQEL 3309 679**************************************998 PP >> Laminin_II Laminin Domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.5 1.1 2.2e-06 0.012 24 94 .. 1610 1679 .. 1606 1680 .. 0.95 2 ? -0.8 10.5 0.23 1.3e+03 9 96 .. 2119 2204 .. 2090 2210 .. 0.84 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 2.2e-06 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX CS Laminin_II 24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 ++l++t+++++e+++ e+ ++kv++++ +++ + +L+++ p ++++l + q+e++++ + ni++ T018797_1 1610 NDLSQTQQQIKEMKEMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKE-IVTNIQR 1679 68999********************************************************76.9999986 PP == domain 2 score: -0.8 bits; conditional E-value: 0.23 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXX CS Laminin_II 9 netakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96 n+ ++ l +++++q+ e+++e+ + +++++ + + ++++++ + ++ ++L++ a q ++kl+e+ +e+a+ +++++++ T018797_1 2119 NQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQ--YKKQLEQLN 2204 55555556678899999999999999999999999999999999999999999****************99999984..466666664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 876 (0.0537226); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.57 # Mc/sec: 17850.59 // Query: T018797_2 [L=3619] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-07 29.7 3.0 4.2e-07 29.3 3.0 1.2 1 CCDC144C CCDC144C protein coiled-coil region Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 3.0 2.5e-11 4.2e-07 145 185 .. 1569 1609 .. 1569 1611 .. 0.97 Alignments for each domain: == domain 1 score: 29.3 bits; conditional E-value: 2.5e-11 CCDC144C 145 knellsqqLskaesklnsLenelhetrdaLrektlllEsvq 185 kne+l++qLsk + k+n+L++++++ rd+Lr+k+l+lE++q T018797_2 1569 KNEFLTEQLSKKQIKFNTLKDKFRKNRDTLRKKSLALETLQ 1609 69*************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3619 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.05u 0.25s 00:00:01.30 Elapsed: 00:00:00.54 # Mc/sec: 19172.86 // Query: T018797_3 [L=3618] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-29 102.0 16.4 2.9e-29 102.0 16.4 2.7 3 CCDC144C CCDC144C protein coiled-coil region 2.1e-16 60.1 5.4 2.1e-16 60.1 5.4 2.8 3 DUF3496 Domain of unknown function (DUF3496) ------ inclusion threshold ------ 0.014 14.7 0.0 0.027 13.8 0.0 1.3 1 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein Domain annotation for each model (and alignments): >> CCDC144C CCDC144C protein coiled-coil region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 5.4 1.4 7.6e+03 189 237 .. 925 973 .. 914 1027 .. 0.60 2 ! 102.0 16.4 5.4e-33 2.9e-29 1 96 [. 1429 1524 .. 1429 1525 .. 0.99 3 ? -1.8 1.1 0.22 1.2e+03 74 108 .. 2220 2254 .. 2206 2269 .. 0.71 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1.4 CCDC144C 189 sqaqcqikeleqmyqneeekvnkyigkqesleerlsqlqsenllLrqQL 237 q+ + l ++++e+e+ +++ +kq ++e +se + L + + T018797_3 925 VQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNTNKSEKIQLSENV 973 5555555555555555555555555555555555555555555444433 PP == domain 2 score: 102.0 bits; conditional E-value: 5.4e-33 CCDC144C 1 NrmLqdeiavlrleidtiknqsqekEkkyledieilkeknddlqkslKlneetltktvsqyngqLnvLkaentmlnskLekekqnkerletevesy 96 N++L+ +ia+lr+ei t+kn++ ekE+kyl+d++i+k+ n+ l+k +Klnee +t+t+++y+++Ln+Lkaent+lns+L ke ++ +rle+e+es T018797_3 1429 NCILKTDIAILRQEIRTMKNDNLEKENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSELLKEEESNKRLEAEIESS 1524 9*********************************************************************************************95 PP == domain 3 score: -1.8 bits; conditional E-value: 0.22 CCDC144C 74 mlnskLekekqnkerletevesyrsrLaaAiqdhe 108 + k+ k k e++ te+e y+ aaA++ T018797_3 2220 DVDCKFYKMKTAYEEVTTELEEYKEAFAAALKANS 2254 45667778888889999999999999999987543 PP >> DUF3496 Domain of unknown function (DUF3496) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 2.8 3 1.6e+04 34 74 .. 921 961 .. 919 970 .. 0.87 2 ? -5.7 5.5 3 1.6e+04 30 87 .. 1451 1507 .. 1435 1521 .. 0.56 3 ! 60.1 5.4 3.9e-20 2.1e-16 3 70 .. 2213 2279 .. 2212 2285 .. 0.93 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 3 DUF3496 34 kqlyleelkvrksLsnklnktnerLaevstkllvekeqnrs 74 ++ y++ l++++ L l++++er + + k ke n++ T018797_3 921 QRKYVQTLRAEQTLPVALEEEQERCERSEKKQSQVKEGNNT 961 568999*******************9999999999987765 PP == domain 2 score: -5.7 bits; conditional E-value: 3 DUF3496 30 LekykqlyleelkvrksLsnklnktnerLaevstkllvekeqnrsllstlttrpvles 87 Lek + yl+ +k+ k + l+k + +e+ t+ +q+ + l++ +tr e+ T018797_3 1451 LEK-ENKYLKDVKIVKKTNAALEKYIKLNEELITRTAFRYQQELNDLKAENTRLNSEL 1507 555.344666666666666666665555555555555555555555555555544444 PP == domain 3 score: 60.1 bits; conditional E-value: 3.9e-20 DUF3496 3 qmElrikdLeselskmKtsqedsnkteLekykqlyleelkvrksLsnklnktnerLaevstkllveke 70 + El++kd+ ++++kmKt++e++ +teLe+yk++++++lk+++s+s+kl+k+n+++a++s l k+ T018797_3 2213 KKELTLKDVDCKFYKMKTAYEEV-TTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRKS 2279 78*********************.***********************************988777775 PP >> BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 5e-06 0.027 145 175 .. 3226 3256 .. 3220 3265 .. 0.87 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5e-06 BAR_3_WASP_bdg 145 nfPDiigvhkgalekvkesdklveegklsse 175 + P ii++hk+al+kv es ++v+egk + + T018797_3 3226 SSPSIIHIHKEALTKVMESRQHVAEGKTEVQ 3256 679**********************987654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3618 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 690 (0.0423157); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.19u 0.30s 00:00:01.49 Elapsed: 00:00:00.56 # Mc/sec: 18483.01 // Query: T155207_1 [L=1546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 9214.26 // Query: T155207_2 [L=1546] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1546 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.50 # Mc/sec: 8845.69 // Query: T155207_3 [L=1545] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1545 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.46 # Mc/sec: 9608.66 // Query: T258996_1 [L=2860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.6 6.6 6.6 10 5.7 6.6 1.4 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 6.6 0.00063 10 6 41 .. 1870 1905 .. 1856 1916 .. 0.92 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.00063 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258996_1 1870 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1905 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 329 (0.0201766); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.25s 00:00:01.16 Elapsed: 00:00:00.50 # Mc/sec: 16363.95 // Query: T258996_2 [L=2860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.50 # Mc/sec: 16363.95 // Query: T258996_3 [L=2860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 395 (0.0242242); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.50 # Mc/sec: 16363.95 // Query: T040830_1 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.20s 00:00:00.80 Elapsed: 00:00:00.45 # Mc/sec: 6802.42 // Query: T040830_2 [L=1070] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1070 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44 # Mc/sec: 6957.02 // Query: T040830_3 [L=1069] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1069 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.46 # Mc/sec: 6648.32 // Query: T265030_1 [L=193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 81 (0.0049675); expected 326.1 (0.02) Passed bias filter: 37 (0.0022691); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.43 # Mc/sec: 1284.05 // Query: T265030_2 [L=193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.6 0.0 0.0002 21.2 0.0 1.1 1 cNMP_binding Cyclic nucleotide-binding domain Domain annotation for each model (and alignments): >> cNMP_binding Cyclic nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.0 1.2e-08 0.0002 4 55 .. 30 86 .. 27 92 .. 0.88 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.2e-08 E-TT-EEE-TTSB-SEEEEEEES-EEEE.....EETTS-EEEEEEE-TTEEESHHHH CS cNMP_binding 4 fkagevifrqGdpadslyivlsGevrvy.....lsedgkevilavlgpGdlfGelal 55 ++a+ ++rqG + ++y +l G ++v+ ++++ ++ il ++++Gd++G +l T265030_2 30 YEAESLVLRQGHLPLECYWILAGHLKVIssntsTNKNSNSDILSEFEEGDFIGVNSL 86 899********99999***********98887777777888************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.47 # Mc/sec: 1174.77 // Query: T265030_3 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.47 # Mc/sec: 1168.68 // Query: T138628_1 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 12901.24 // Query: T138628_2 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.69 10.1 4.7 1.1 9.4 0.9 2.7 2 AZUL Amino-terminal Zinc-binding domain of ubiquitin lig Domain annotation for each model (and alignments): >> AZUL Amino-terminal Zinc-binding domain of ubiquitin ligase E3A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 0.035 5.7e+02 24 46 .. 896 923 .. 894 926 .. 0.83 2 ? 9.4 0.9 7.1e-05 1.1 15 42 .. 1104 1132 .. 1102 1136 .. 0.87 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.035 AZUL 24 ptCassr.....kapvrrltpnsAaalA 46 p C ++ k p rr+++ +A a+A T138628_2 896 PKCRRCHalklsKDPRRRVSEEQAEAKA 923 56777777777799************99 PP == domain 2 score: 9.4 bits; conditional E-value: 7.1e-05 AZUL 15 GCgsknCtnptCassr.kapvrrltpnsA 42 GC+s +C+++tC + ++p + +++++A T138628_2 1104 GCQSLHCETSTCSYEHlQRPQHAPDTTQA 1132 ************98779888888888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.25s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 13154.21 // Query: T138628_3 [L=2344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.51 # Mc/sec: 13148.60 // Query: T258984_1 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.55 # Mc/sec: 13653.96 // Query: T258984_2 [L=2625] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.8 6.8 6.6 9.4 5.8 6.6 1.5 1 DUF1028 Family of unknown function (DUF1028) Domain annotation for each model (and alignments): >> DUF1028 Family of unknown function (DUF1028) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 6.6 0.00057 9.4 6 41 .. 1684 1719 .. 1670 1730 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.00057 EE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEE CS DUF1028 6 ardpetgelGvavaskslaVgalvpfaragvGavat 41 a+ +++g +G+av+ + +Vga+v +ra vGav t T258984_2 1684 AVTASQGCVGAAVTASQGCVGAAVTALRACVGAVVT 1719 56788999*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2625 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 369 (0.0226297); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 13174.88 // Query: T258984_3 [L=2624] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2624 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 428 (0.026248); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.56 # Mc/sec: 13169.86 // Query: T227008_1 [L=3874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 259 (0.0158837); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.62 # Mc/sec: 17875.57 // Query: T227008_2 [L=3874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.61 # Mc/sec: 18168.62 // Query: T227008_3 [L=3874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 495 (0.0303569); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.30s 00:00:01.52 Elapsed: 00:00:00.57 # Mc/sec: 19108.37 // Query: T059327_1 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.54 # Mc/sec: 5340.22 // Query: T059327_2 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5149.49 // Query: T059327_3 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.54 # Mc/sec: 5334.92 // Query: T112470_1 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 6882.50 // Query: T112470_2 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.54 # Mc/sec: 6627.59 // Query: T112470_3 [L=1251] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1251 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.72 # Mc/sec: 4970.69 // Query: T156313_1 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-14 52.2 0.0 1.1e-13 51.3 0.0 1.5 1 EF-hand_7 EF-hand domain pair 4.1e-11 41.5 0.1 8.1e-05 21.8 0.0 2.5 2 EF-hand_1 EF hand 2.2e-07 30.4 0.1 6.9e-06 25.6 0.0 2.5 3 EF-hand_8 EF-hand domain pair 6.3e-07 28.5 0.1 0.025 14.0 0.0 2.3 2 EF-hand_5 EF hand 7.3e-07 28.5 0.0 0.0011 18.6 0.0 2.5 2 EF-hand_6 EF-hand domain Domain annotation for each model (and alignments): >> EF-hand_7 EF-hand domain pair # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.3 0.0 3.5e-17 1.1e-13 2 70 .. 257 324 .. 256 325 .. 0.91 Alignments for each domain: == domain 1 score: 51.3 bits; conditional E-value: 3.5e-17 EF-hand_7 2 eklkeaFkelDtdgdgyldkeeLlrllrrifegagegkkltdeeleylfkclDldgdGvisfdEFlkly 70 +++++aF++lD+d++g+++ +e++ +l i ++ g++ +ltdee e +++ D++gdG+i+++EF +l+ T156313_1 257 DAIHTAFQSLDKDKSGFIEWNEIKYILSIIPSS-GPTTPLTDEEAEAMIQAADTHGDGRINYEEFSELI 324 689*********************777765555.*******************************9886 PP >> EF-hand_1 EF hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.0 5.9e-07 0.0019 3 27 .. 260 284 .. 258 286 .. 0.90 2 ! 21.8 0.0 2.5e-08 8.1e-05 1 28 [. 299 326 .. 299 327 .. 0.93 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.9e-07 HHHHHHHTTTSSSSEEHHHHHHHHH CS EF-hand_1 3 keiFrefDkDgdGkIdfeEfkellk 27 +F+ +DkD++G+I+++E k +l+ T156313_1 260 HTAFQSLDKDKSGFIEWNEIKYILS 284 679*****************99885 PP == domain 2 score: 21.8 bits; conditional E-value: 2.5e-08 HHHHHHHHHTTTSSSSEEHHHHHHHHHH CS EF-hand_1 1 elkeiFrefDkDgdGkIdfeEfkellkk 28 e + +++ +D+ gdG+I++eEf el+kk T156313_1 299 EAEAMIQAADTHGDGRINYEEFSELIKK 326 5789********************9997 PP >> EF-hand_8 EF-hand domain pair # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.1 2.2 7.3e+03 12 28 .. 210 225 .. 202 227 .. 0.54 2 ? 2.0 0.0 0.051 1.7e+02 24 47 .. 256 279 .. 243 280 .. 0.86 3 ! 25.6 0.0 2.1e-09 6.9e-06 20 52 .. 294 325 .. 282 327 .. 0.87 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 2.2 EF-hand_8 12 ral.rllglkglseeevd 28 +++ ++ g++ ls+++++ T156313_1 210 KMAlAM-GTS-LSDKDIE 225 223233.666.9998887 PP == domain 2 score: 2.0 bits; conditional E-value: 0.051 EF-hand_8 24 eeevdilfrefDtdgdGkisfeEF 47 ++++++ f +D d++G i ++E T156313_1 256 DDAIHTAFQSLDKDKSGFIEWNEI 279 5679999**************995 PP == domain 3 score: 25.6 bits; conditional E-value: 2.1e-09 EF-hand_8 20 kglseeevdilfrefDtdgdGkisfeEFcvlle 52 + l++ee+++++ ++Dt gdG+i++eEF l + T156313_1 294 P-LTDEEAEAMIQAADTHGDGRINYEEFSELIK 325 4.9*************************98765 PP >> EF-hand_5 EF hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.2 0.0 2.9e-05 0.094 4 21 .. 262 279 .. 259 280 .. 0.88 2 ! 14.0 0.0 7.7e-06 0.025 3 24 .. 302 323 .. 301 324 .. 0.89 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.9e-05 HHHHHSTTSSSCEEHHHH CS EF-hand_5 4 tFqaiDlNgDGkIskeEL 21 +Fq +D++++G+I E T156313_1 262 AFQSLDKDKSGFIEWNEI 279 7*************9996 PP == domain 2 score: 14.0 bits; conditional E-value: 7.7e-06 HHHHHHSTTSSSCEEHHHHHHH CS EF-hand_5 3 dtFqaiDlNgDGkIskeELkrl 24 ++ qa+D+ gDG+I eE+ +l T156313_1 302 AMIQAADTHGDGRINYEEFSEL 323 5679***************987 PP >> EF-hand_6 EF-hand domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 3.5e-07 0.0011 2 27 .. 259 284 .. 258 288 .. 0.93 2 ! 7.1 0.0 0.0016 5.2 8 28 .. 306 326 .. 300 332 .. 0.88 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 3.5e-07 EF-hand_6 2 lreaFklfDkdgdGkidaeElrkalr 27 ++ aF+ +Dkd++G+i ++E++ +l+ T156313_1 259 IHTAFQSLDKDKSGFIEWNEIKYILS 284 6789******************9997 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0016 EF-hand_6 8 lfDkdgdGkidaeElrkalrk 28 + D+ gdG+i +eE+ +++k T156313_1 306 AADTHGDGRINYEEFSELIKK 326 569************999884 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.68 # Mc/sec: 5460.82 // Query: T156313_2 [L=1298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.61 # Mc/sec: 6087.47 // Query: T156313_3 [L=1297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1297 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.60 # Mc/sec: 6184.16 // Query: T364935_1 [L=940] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-92 299.9 112.7 2.1e-09 37.3 0.1 15.4 15 zf-H2C2_2 Zinc-finger double domain 2.9e-66 216.3 114.7 1.2e-07 31.7 0.7 14.1 13 zf-C2H2 Zinc finger, C2H2 type 8.8e-37 122.4 110.2 0.0015 19.0 0.5 14.2 13 zf-C2H2_4 C2H2-type zinc finger 7e-26 89.5 100.5 0.0019 18.0 0.7 14.1 14 zf-C2H2_6 C2H2-type zinc finger 6e-11 42.2 62.1 0.02 15.1 0.4 12.1 12 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 1.8e-08 34.2 77.0 0.0082 16.1 3.5 9.5 12 Zn-ribbon_8 Zinc ribbon domain 1.5e-06 27.7 76.2 0.028 14.1 0.2 12.7 13 zf-C2H2_11 zinc-finger C2H2-type 0.00013 22.1 93.3 0.0074 16.5 0.8 12.3 12 zf-met Zinc-finger of C2H2 type 0.00056 20.5 61.6 0.024 15.3 1.3 7.1 7 zinc_ribbon_15 zinc-ribbon family 0.0025 17.7 57.8 2.8 7.9 0.1 12.8 13 XPA_N XPA protein N-terminal ------ inclusion threshold ------ 0.73 10.0 74.1 1.4 9.1 3.0 9.1 11 C1_4 TFIIH C1-like domain Domain annotation for each model (and alignments): >> zf-H2C2_2 Zinc-finger double domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.7 0.62 9.1e+02 5 15 .. 349 362 .. 347 365 .. 0.73 2 ? 5.0 0.2 0.023 34 13 25 .. 483 495 .. 468 496 .. 0.85 3 ! 32.2 0.7 5.7e-11 8.4e-08 1 26 [] 499 524 .. 499 524 .. 0.95 4 ! 37.3 0.1 1.4e-12 2.1e-09 1 25 [. 527 551 .. 527 552 .. 0.96 5 ! 34.7 1.3 9.3e-12 1.4e-08 1 26 [] 555 580 .. 555 580 .. 0.95 6 ! 34.0 1.2 1.5e-11 2.3e-08 1 26 [] 583 608 .. 583 608 .. 0.96 7 ! 32.0 2.1 6.4e-11 9.5e-08 1 25 [. 611 635 .. 611 636 .. 0.95 8 ! 16.0 2.9 7.8e-06 0.012 2 24 .. 640 662 .. 639 663 .. 0.93 9 ! 37.1 1.2 1.6e-12 2.4e-09 2 26 .] 668 692 .. 667 692 .. 0.95 10 ! 33.2 0.2 2.7e-11 4e-08 4 25 .. 698 719 .. 695 720 .. 0.92 11 ! 33.4 2.9 2.4e-11 3.6e-08 1 25 [. 723 747 .. 723 748 .. 0.95 12 ! 12.2 4.1 0.00012 0.18 1 24 [. 751 774 .. 751 774 .. 0.94 13 ! 35.6 0.5 4.7e-12 6.9e-09 2 25 .. 780 803 .. 779 803 .. 0.94 14 ! 26.0 2.4 5.3e-09 7.9e-06 1 24 [. 807 830 .. 807 831 .. 0.97 15 ? -0.8 0.3 1.6 2.3e+03 2 9 .. 836 843 .. 835 848 .. 0.81 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.62 zf-H2C2_2 5 HlrkHt...gekpy 15 H+r+H+ + +p+ T364935_1 349 HTRFHHstqKTTPF 362 ****9977444566 PP == domain 2 score: 5.0 bits; conditional E-value: 0.023 zf-H2C2_2 13 kpyeCplCdkaFk 25 +py C +C+k ++ T364935_1 483 NPYLCTECGKGYT 495 599*******987 PP == domain 3 score: 32.2 bits; conditional E-value: 5.7e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +L++H ++H gekpyeC+ C+k+F++ T364935_1 499 SLTQHQKTHIGEKPYECKICGKSFTR 524 599*********************85 PP == domain 4 score: 37.3 bits; conditional E-value: 1.4e-12 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 nL++H r HtgekpyeC +C+kaF+ T364935_1 527 NLVQHQRIHTGEKPYECNECGKAFS 551 89**********************8 PP == domain 5 score: 34.7 bits; conditional E-value: 9.3e-12 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 nL +H r+HtgekpyeC +C k+F++ T364935_1 555 NLIQHQRVHTGEKPYECNECEKTFSH 580 7889********************97 PP == domain 6 score: 34.0 bits; conditional E-value: 1.5e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +Lr H r Htgekpy C +C+kaF++ T364935_1 583 SLRNHERIHTGEKPYPCNECGKAFSH 608 69**********************97 PP == domain 7 score: 32.0 bits; conditional E-value: 6.4e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H r Htg+kpyeC +C+k+F+ T364935_1 611 ALTQHHRIHTGKKPYECTECGKTFS 635 699*********************8 PP == domain 8 score: 16.0 bits; conditional E-value: 7.8e-06 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaF 24 L H H ek y+C+ C+k+F T364935_1 640 LIEHQGIHSEEKSYQCKQCRKVF 662 778******************99 PP == domain 9 score: 37.1 bits; conditional E-value: 1.6e-12 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFkt 26 L rH r+HtgekpyeC +C+kaF++ T364935_1 668 LIRHQRTHTGEKPYECNECGKAFSH 692 88*********************97 PP == domain 10 score: 33.2 bits; conditional E-value: 2.7e-11 zf-H2C2_2 4 rHlrkHtgekpyeCplCdkaFk 25 +H r HtgekpyeC +C+kaF+ T364935_1 698 QHQRIHTGEKPYECNACGKAFN 719 7********************8 PP == domain 11 score: 33.4 bits; conditional E-value: 2.4e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L+ H r+Htgekpy C++C+k+F+ T364935_1 723 HLTEHQRTHTGEKPYVCKECGKTFS 747 699*********************8 PP == domain 12 score: 12.2 bits; conditional E-value: 0.00012 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 +L+ Hl+ H kpy+C +C k F T364935_1 751 HLTEHLKIHSCVKPYQCNECQKLF 774 699*****************9976 PP == domain 13 score: 35.6 bits; conditional E-value: 4.7e-12 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L rH r+Htgekpy+C +C+k+F+ T364935_1 780 LIRHQRTHTGEKPYQCNECGKSFS 803 88*********************6 PP == domain 14 score: 26.0 bits; conditional E-value: 5.3e-09 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 +L++H r Ht e+py+C +C+++F T364935_1 807 ALTKHKRIHTRERPYQCTKCGDVF 830 69*******************998 PP == domain 15 score: -0.8 bits; conditional E-value: 1.6 zf-H2C2_2 2 LrrHlrkH 9 L rH ++H T364935_1 836 LIRHQKTH 843 789***99 PP >> zf-C2H2 Zinc finger, C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 1.6 0.00038 0.56 1 23 [] 485 507 .. 485 507 .. 0.96 2 ! 31.7 0.7 7.9e-11 1.2e-07 1 23 [] 513 535 .. 513 535 .. 0.98 3 ! 26.7 0.2 2.9e-09 4.3e-06 1 23 [] 541 563 .. 541 563 .. 0.98 4 ! 22.0 2.6 9.4e-08 0.00014 1 23 [] 569 591 .. 569 591 .. 0.98 5 ! 21.9 1.6 9.9e-08 0.00015 1 23 [] 597 619 .. 597 619 .. 0.98 6 ! 22.7 0.8 5.8e-08 8.5e-05 1 23 [] 625 647 .. 625 647 .. 0.96 7 ! 18.3 7.6 1.4e-06 0.002 1 23 [] 653 675 .. 653 675 .. 0.99 8 ! 20.0 0.5 4e-07 0.00059 1 23 [] 681 703 .. 681 703 .. 0.98 9 ! 25.0 1.0 1e-08 1.5e-05 1 23 [] 709 731 .. 709 731 .. 0.99 10 ! 25.6 2.3 6.7e-09 9.9e-06 1 23 [] 737 759 .. 737 759 .. 0.98 11 ! 17.0 4.9 3.6e-06 0.0054 1 23 [] 765 787 .. 765 787 .. 0.99 12 ! 25.0 0.8 1.1e-08 1.6e-05 1 23 [] 793 815 .. 793 815 .. 0.99 13 ! 15.2 5.3 1.4e-05 0.021 1 23 [] 821 843 .. 821 843 .. 0.99 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00038 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y C++Cgk ++ +L++H++tH T364935_1 485 YLCTECGKGYTCLASLTQHQKTH 507 66********************9 PP == domain 2 score: 31.7 bits; conditional E-value: 7.9e-11 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++CgksF+r+snL++H+r+H T364935_1 513 YECKICGKSFTRNSNLVQHQRIH 535 99********************9 PP == domain 3 score: 26.7 bits; conditional E-value: 2.9e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ nL +H+r+H T364935_1 541 YECNECGKAFSQSTNLIQHQRVH 563 99********************9 PP == domain 4 score: 22.0 bits; conditional E-value: 9.4e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C k+F+++s+L++H r+H T364935_1 569 YECNECEKTFSHRSSLRNHERIH 591 99*******************99 PP == domain 5 score: 21.9 bits; conditional E-value: 9.9e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F++ s L++H r+H T364935_1 597 YPCNECGKAFSHISALTQHHRIH 619 99*******************99 PP == domain 6 score: 22.7 bits; conditional E-value: 5.8e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk+F+r+ +L H+ +H T364935_1 625 YECTECGKTFSRSTHLIEHQGIH 647 99*****************9887 PP == domain 7 score: 18.3 bits; conditional E-value: 1.4e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C+ C k+F+++ +L rH+rtH T364935_1 653 YQCKQCRKVFCHSTSLIRHQRTH 675 9*********************9 PP == domain 8 score: 20.0 bits; conditional E-value: 4e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F++ + +H+r+H T364935_1 681 YECNECGKAFSHTPAFIQHQRIH 703 99********************9 PP == domain 9 score: 25.0 bits; conditional E-value: 1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C+ Cgk F+r+ +L+ H+rtH T364935_1 709 YECNACGKAFNRSAHLTEHQRTH 731 99********************9 PP == domain 10 score: 25.6 bits; conditional E-value: 6.7e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk+F+r+ +L+ H+++H T364935_1 737 YVCKECGKTFSRSTHLTEHLKIH 759 9********************99 PP == domain 11 score: 17.0 bits; conditional E-value: 3.6e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C k F+ + +L rH+rtH T364935_1 765 YQCNECQKLFCYRTSLIRHQRTH 787 9*********************9 PP == domain 12 score: 25.0 bits; conditional E-value: 1.1e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++CgksF+ +s L++H r+H T364935_1 793 YQCNECGKSFSLSSALTKHKRIH 815 9********************99 PP == domain 13 score: 15.2 bits; conditional E-value: 1.4e-05 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cg +F+++ +L rH++tH T364935_1 821 YQCTKCGDVFCHSTSLIRHQKTH 843 9*********************9 PP >> zf-C2H2_4 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 1.0 1.6e-05 0.023 1 23 [. 485 507 .. 485 508 .. 0.96 2 ! 19.0 0.5 1e-06 0.0015 1 23 [. 513 535 .. 513 536 .. 0.95 3 ! 15.3 0.3 1.6e-05 0.024 1 23 [. 541 563 .. 541 564 .. 0.94 4 ! 14.9 1.8 2.3e-05 0.033 1 23 [. 569 591 .. 569 592 .. 0.94 5 ! 11.6 1.2 0.00025 0.37 1 23 [. 597 619 .. 597 620 .. 0.93 6 ! 15.3 0.7 1.6e-05 0.024 1 23 [. 625 647 .. 625 648 .. 0.92 7 ! 13.5 6.2 6.2e-05 0.092 1 23 [. 653 675 .. 653 676 .. 0.95 8 ! 10.8 0.5 0.00046 0.69 1 23 [. 681 703 .. 681 704 .. 0.91 9 ! 13.3 0.7 6.9e-05 0.1 1 23 [. 709 731 .. 709 732 .. 0.96 10 ! 17.6 1.9 3e-06 0.0045 1 23 [. 737 759 .. 737 760 .. 0.95 11 ! 12.9 3.6 9.4e-05 0.14 1 23 [. 765 787 .. 765 788 .. 0.96 12 ! 16.2 0.8 8.3e-06 0.012 1 23 [. 793 815 .. 793 816 .. 0.94 13 ! 13.3 4.7 7.3e-05 0.11 1 23 [. 821 843 .. 821 844 .. 0.95 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.6e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 + C+ Cgk +++ +L +H kth T364935_1 485 YLCTECGKGYTCLASLTQHQKTH 507 78********************9 PP == domain 2 score: 19.0 bits; conditional E-value: 1e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+iCgksF+++++L +H + h T364935_1 513 YECKICGKSFTRNSNLVQHQRIH 535 89********99999*****998 PP == domain 3 score: 15.3 bits; conditional E-value: 1.6e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs +++L +H + h T364935_1 541 YECNECGKAFSQSTNLIQHQRVH 563 89********99999****9988 PP == domain 4 score: 14.9 bits; conditional E-value: 2.3e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C C k+Fs +++L++H + h T364935_1 569 YECNECEKTFSHRSSLRNHERIH 591 89********99999*****998 PP == domain 5 score: 11.6 bits; conditional E-value: 0.00025 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs +aL +H + h T364935_1 597 YPCNECGKAFSHISALTQHHRIH 619 89**************9998888 PP == domain 6 score: 15.3 bits; conditional E-value: 1.6e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cgk+Fs++++L H h T364935_1 625 YECTECGKTFSRSTHLIEHQGIH 647 89*****************8777 PP == domain 7 score: 13.5 bits; conditional E-value: 6.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C++C+k+F+ +++L rH +th T364935_1 653 YQCKQCRKVFCHSTSLIRHQRTH 675 89********99999*******9 PP == domain 8 score: 10.8 bits; conditional E-value: 0.00046 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs a+ +H + h T364935_1 681 YECNECGKAFSHTPAFIQHQRIH 703 89********88888****9998 PP == domain 9 score: 13.3 bits; conditional E-value: 6.9e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F+++ +L H +th T364935_1 709 YECNACGKAFNRSAHLTEHQRTH 731 89********************9 PP == domain 10 score: 17.6 bits; conditional E-value: 3e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 + C+ Cgk+Fs++++L Hlk h T364935_1 737 YVCKECGKTFSRSTHLTEHLKIH 759 89*******************99 PP == domain 11 score: 12.9 bits; conditional E-value: 9.4e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C C+k F+ +++L rH +th T364935_1 765 YQCNECQKLFCYRTSLIRHQRTH 787 89********99999*******9 PP == domain 12 score: 16.2 bits; conditional E-value: 8.3e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C CgksFs ++aL +H + h T364935_1 793 YQCNECGKSFSLSSALTKHKRIH 815 89********99999****9988 PP == domain 13 score: 13.3 bits; conditional E-value: 7.3e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cg +F+ +++L rH kth T364935_1 821 YQCTKCGDVFCHSTSLIRHQKTH 843 89********99999*******9 PP >> zf-C2H2_6 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 1.5 2.2e+03 15 26 .. 291 302 .. 291 303 .. 0.88 2 ! 10.1 1.1 0.00039 0.57 2 24 .. 485 507 .. 484 510 .. 0.94 3 ! 13.6 0.2 3e-05 0.044 2 20 .. 513 531 .. 512 537 .. 0.78 4 ! 14.1 0.2 2e-05 0.03 2 24 .. 541 563 .. 540 566 .. 0.90 5 ! 11.3 0.7 0.00016 0.24 2 22 .. 569 589 .. 568 594 .. 0.83 6 ! 12.4 0.8 7e-05 0.1 2 24 .. 597 619 .. 596 622 .. 0.89 7 ! 15.3 0.6 8.7e-06 0.013 2 20 .. 625 643 .. 624 648 .. 0.91 8 ? 5.5 5.5 0.01 15 2 24 .. 653 675 .. 652 678 .. 0.92 9 ! 8.9 0.5 0.00086 1.3 2 12 .. 681 691 .. 680 692 .. 0.91 10 ! 11.6 0.7 0.00013 0.19 2 24 .. 709 731 .. 708 734 .. 0.93 11 ! 16.8 1.5 2.9e-06 0.0044 2 24 .. 737 759 .. 736 760 .. 0.93 12 ! 10.9 1.9 0.00021 0.3 2 24 .. 765 787 .. 764 790 .. 0.93 13 ! 18.0 0.7 1.3e-06 0.0019 2 24 .. 793 815 .. 792 818 .. 0.92 14 ? 2.9 4.1 0.066 98 2 24 .. 821 843 .. 820 846 .. 0.93 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 1.5 zf-C2H2_6 15 qaLggHkksHrk 26 +++g H k+Hr+ T364935_1 291 YSWGIHFKTHRE 302 68999*****97 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00039 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k + l +L+ H k+H T364935_1 485 YLCTECGKGYTCLASLTQHQKTH 507 89********************9 PP == domain 3 score: 13.6 bits; conditional E-value: 3e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggH 20 +eC++C+ksF + +L H T364935_1 513 YECKICGKSFTRNSNLVQH 531 9*********876666555 PP == domain 4 score: 14.1 bits; conditional E-value: 2e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+eC+k F+ ++L+ H + H T364935_1 541 YECNECGKAFSQSTNLIQHQRVH 563 9****************998876 PP == domain 5 score: 11.3 bits; conditional E-value: 0.00016 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkk 22 +eC+eC k+F+ +L+ H + T364935_1 569 YECNECEKTFSHRSSLRNHER 589 9*********98888888865 PP == domain 6 score: 12.4 bits; conditional E-value: 7e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k F+ + aL+ H + H T364935_1 597 YPCNECGKAFSHISALTQHHRIH 619 99***************997755 PP == domain 7 score: 15.3 bits; conditional E-value: 8.7e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggH 20 +eC+eC+k+F++ + L++H T364935_1 625 YECTECGKTFSRSTHLIEH 643 9**********99999888 PP == domain 8 score: 5.5 bits; conditional E-value: 0.01 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C++C k+F ++L+ H ++H T364935_1 653 YQCKQCRKVFCHSTSLIRHQRTH 675 99********************9 PP == domain 9 score: 8.9 bits; conditional E-value: 0.00086 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T364935_1 681 YECNECGKAFS 691 9********96 PP == domain 10 score: 11.6 bits; conditional E-value: 0.00013 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+ C+k F++ L++H ++H T364935_1 709 YECNACGKAFNRSAHLTEHQRTH 731 9*********************9 PP == domain 11 score: 16.8 bits; conditional E-value: 2.9e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k+F++ + L++H+k H T364935_1 737 YVCKECGKTFSRSTHLTEHLKIH 759 99******************977 PP == domain 12 score: 10.9 bits; conditional E-value: 0.00021 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC k F + ++L+ H ++H T364935_1 765 YQCNECQKLFCYRTSLIRHQRTH 787 9********************** PP == domain 13 score: 18.0 bits; conditional E-value: 1.3e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+ksF+ aL++Hk+ H T364935_1 793 YQCNECGKSFSLSSALTKHKRIH 815 9*******************987 PP == domain 14 score: 2.9 bits; conditional E-value: 0.066 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C+ +F ++L+ H k+H T364935_1 821 YQCTKCGDVFCHSTSLIRHQKTH 843 99*****************9999 PP >> zf-C2H2_jaz Zinc-finger double-stranded RNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.6 0.62 9.2e+02 4 24 .. 487 507 .. 485 508 .. 0.87 2 ! 13.3 0.1 5e-05 0.074 2 22 .. 513 533 .. 512 533 .. 0.94 3 ? 5.4 0.1 0.014 21 2 22 .. 541 561 .. 540 561 .. 0.93 4 ! 15.1 0.4 1.4e-05 0.02 2 22 .. 569 589 .. 568 589 .. 0.94 5 ? 5.2 0.2 0.017 26 2 20 .. 597 615 .. 596 616 .. 0.94 6 ! 9.3 0.1 0.00089 1.3 2 20 .. 625 643 .. 624 644 .. 0.91 7 ? 0.0 4.5 0.72 1.1e+03 4 24 .. 655 675 .. 652 675 .. 0.89 8 ? 3.9 0.2 0.043 63 2 22 .. 681 701 .. 680 701 .. 0.90 9 ! 10.6 0.3 0.00033 0.49 2 24 .. 709 731 .. 708 731 .. 0.94 10 ! 12.9 0.1 6.2e-05 0.093 2 22 .. 737 757 .. 736 757 .. 0.95 11 ? -2.2 0.7 3.7 5.4e+03 4 11 .. 767 774 .. 764 786 .. 0.84 12 ? 3.8 0.1 0.046 68 4 22 .. 795 813 .. 792 813 .. 0.90 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.62 BTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlkSK 24 C C K + +l +H+k++ T364935_1 487 CTECGKGYTCLASLTQHQKTH 507 999999999889999999986 PP == domain 2 score: 13.3 bits; conditional E-value: 5e-05 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C++C K F ++l +H++ T364935_1 513 YECKICGKSFTRNSNLVQHQR 533 89*****************86 PP == domain 3 score: 5.4 bits; conditional E-value: 0.014 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C K F+ + +l +H++ T364935_1 541 YECNECGKAFSQSTNLIQHQR 561 89*****************85 PP == domain 4 score: 15.1 bits; conditional E-value: 1.4e-05 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C+K+F+ ++l+nH++ T364935_1 569 YECNECEKTFSHRSSLRNHER 589 89*****************96 PP == domain 5 score: 5.2 bits; conditional E-value: 0.017 CBBTTTTBBBSSHHHHHCC CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnH 20 + C C K F+ +al +H T364935_1 597 YPCNECGKAFSHISALTQH 615 66****************9 PP == domain 6 score: 9.3 bits; conditional E-value: 0.00089 CBBTTTTBBBSSHHHHHCC CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnH 20 ++C C K+F+ + l +H T364935_1 625 YECTECGKTFSRSTHLIEH 643 89***********999999 PP == domain 7 score: 0.0 bits; conditional E-value: 0.72 BTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlkSK 24 C+ C K F + +l H++++ T364935_1 655 CKQCRKVFCHSTSLIRHQRTH 675 **************9999985 PP == domain 8 score: 3.9 bits; conditional E-value: 0.043 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C K F+ a+ +H++ T364935_1 681 YECNECGKAFSHTPAFIQHQR 701 89*********9999999975 PP == domain 9 score: 10.6 bits; conditional E-value: 0.00033 CBBTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlkSK 24 ++C +C K F+ + l +H++++ T364935_1 709 YECNACGKAFNRSAHLTEHQRTH 731 89******************986 PP == domain 10 score: 12.9 bits; conditional E-value: 6.2e-05 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 + C+ C K+F+ + l +Hlk T364935_1 737 YVCKECGKTFSRSTHLTEHLK 757 89*****************97 PP == domain 11 score: -2.2 bits; conditional E-value: 3.7 BTTTTBBB CS zf-C2H2_jaz 4 CvlCdKyF 11 C C+K F T364935_1 767 CNECQKLF 774 999**977 PP == domain 12 score: 3.8 bits; conditional E-value: 0.046 BTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlk 22 C C K F+ ++al +H++ T364935_1 795 CNECGKSFSLSSALTKHKR 813 99***************86 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 3.3 0.0017 2.5 6 38 .. 485 524 .. 484 525 .. 0.85 2 ! 13.5 3.0 3.7e-05 0.054 6 35 .. 513 549 .. 512 552 .. 0.91 3 ! 8.3 6.6 0.0016 2.3 6 34 .. 541 576 .. 539 579 .. 0.91 4 ! 8.5 5.4 0.0013 2 6 35 .. 569 605 .. 568 610 .. 0.74 5 ? 5.2 0.2 0.014 21 6 20 .. 597 611 .. 595 619 .. 0.83 6 ! 10.3 6.4 0.00037 0.54 6 33 .. 625 659 .. 624 663 .. 0.87 7 ! 14.9 3.6 1.4e-05 0.02 6 38 .. 681 720 .. 680 721 .. 0.92 8 ! 16.1 3.5 5.5e-06 0.0082 6 38 .. 709 748 .. 708 750 .. 0.91 9 ? 5.0 6.2 0.017 25 6 33 .. 737 771 .. 736 772 .. 0.73 10 ? 4.2 7.0 0.028 42 6 34 .. 765 800 .. 762 803 .. 0.88 11 ! 10.8 3.2 0.00025 0.38 6 33 .. 793 827 .. 792 830 .. 0.86 12 ? 4.2 0.9 0.028 42 6 15 .. 821 830 .. 820 842 .. 0.85 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0017 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y C++Cg+ ++ + q+ + +++ C+ Cg+ +r T364935_1 485 YLCTECGKGYTclasltQHQKTHIGEKPYeCKICGKSFTR 524 89*********8888888888887778888*****98776 PP == domain 2 score: 13.5 bits; conditional E-value: 3.7e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C+ Cg+ f+ + q+i+ +++ C eCg++ T364935_1 513 YECKICGKSFTrnsnlvQHQRIHTGEKPYeCNECGKA 549 9***************99999998889999*****85 PP == domain 3 score: 8.3 bits; conditional E-value: 0.0016 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++Cg+ f + q+++ +++ C eC + T364935_1 541 YECNECGKAFSqstnliQHQRVHTGEKPYeCNECEK 576 9**************999999998889999****76 PP == domain 4 score: 8.5 bits; conditional E-value: 0.0013 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++C ++f +i+ +++ C eCg++ T364935_1 569 YECNECEKTFShrsslrNHERIHTGEKPYpCNECGKA 605 9**********6665553334444458888****985 PP == domain 5 score: 5.2 bits; conditional E-value: 0.014 Zn-ribbon_8 6 YrCeaCghefevlqs 20 Y C++Cg+ f ++ + T364935_1 597 YPCNECGKAFSHISA 611 88********98765 PP == domain 6 score: 10.3 bits; conditional E-value: 0.00037 Zn-ribbon_8 6 YrCeaCghefe......vlqsis.dapltaCPeCg 33 Y+C++Cg++f + q i+ +++ +C++C T364935_1 625 YECTECGKTFSrsthliEHQGIHsEEKSYQCKQCR 659 9****************9*****6665555****6 PP == domain 7 score: 14.9 bits; conditional E-value: 1.4e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y+C++Cg+ f + q+i+ +++ C +Cg++ r T364935_1 681 YECNECGKAFShtpafiQHQRIHTGEKPYeCNACGKAFNR 720 9***************99999998889999*****97765 PP == domain 8 score: 16.1 bits; conditional E-value: 5.5e-06 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y+C+aCg+ f+ + q+ + +++ C+eCg++ r T364935_1 709 YECNACGKAFNrsahltEHQRTHTGEKPYvCKECGKTFSR 748 9**********9999999999998888999*****98776 PP == domain 9 score: 5.0 bits; conditional E-value: 0.017 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCg 33 Y C++Cg++f + +i+ ++ C eC+ T364935_1 737 YVCKECGKTFSrsthltEHLKIHSCVKPYqCNECQ 771 9**********777777333455555777799886 PP == domain 10 score: 4.2 bits; conditional E-value: 0.028 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++C++ f + q+ + +++ C eCg+ T364935_1 765 YQCNECQKLFCyrtsliRHQRTHTGEKPYqCNECGK 800 99********99999988888888888888****97 PP == domain 11 score: 10.8 bits; conditional E-value: 0.00025 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCg 33 Y+C++Cg+ f + +i+ ++ + C +Cg T364935_1 793 YQCNECGKSFSlssaltKHKRIHTRERPYqCTKCG 827 9**********9999998888886667777****9 PP == domain 12 score: 4.2 bits; conditional E-value: 0.028 Zn-ribbon_8 6 YrCeaCghef 15 Y+C++Cg +f T364935_1 821 YQCTKCGDVF 830 9******999 PP >> zf-C2H2_11 zinc-finger C2H2-type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.7 0.6 0.0019 2.8 7 23 .. 487 503 .. 483 505 .. 0.93 2 ? 2.2 0.2 0.093 1.4e+02 7 26 .. 515 534 .. 512 535 .. 0.88 3 ? 4.1 0.1 0.024 36 6 25 .. 542 561 .. 539 563 .. 0.86 4 ! 5.4 0.2 0.0097 14 6 26 .. 570 590 .. 567 591 .. 0.92 5 ! 6.9 0.3 0.0032 4.7 7 26 .. 599 618 .. 596 619 .. 0.94 6 ? 3.7 0.1 0.033 50 6 20 .. 626 640 .. 624 646 .. 0.78 7 ! 7.8 3.7 0.0017 2.5 2 24 .. 650 672 .. 649 674 .. 0.92 8 ? 3.0 0.1 0.052 78 6 26 .. 682 702 .. 679 703 .. 0.83 9 ? -2.0 0.1 1.9 2.8e+03 7 16 .. 711 720 .. 709 729 .. 0.71 10 ? 5.2 0.7 0.011 16 7 26 .. 739 758 .. 737 759 .. 0.94 11 ? 3.9 2.1 0.028 41 5 24 .. 765 784 .. 764 786 .. 0.93 12 ! 14.1 0.2 1.9e-05 0.028 5 26 .. 793 814 .. 790 815 .. 0.94 13 ! 9.3 2.1 0.00057 0.85 5 23 .. 821 839 .. 819 841 .. 0.95 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0019 zf-C2H2_11 7 CleCGlcftSqlsLsRH 23 C+eCG +t sL H T364935_1 487 CTECGKGYTCLASLTQH 503 **************999 PP == domain 2 score: 2.2 bits; conditional E-value: 0.093 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C CG ft L H +I T364935_1 515 CKICGKSFTRNSNLVQHQRI 534 999******99999999888 PP == domain 3 score: 4.1 bits; conditional E-value: 0.024 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlf 25 C eCG f+ + L H + T364935_1 542 ECNECGKAFSQSTNLIQHQR 561 5*********9999988865 PP == domain 4 score: 5.4 bits; conditional E-value: 0.0097 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eC f+ sL+ H +I T364935_1 570 ECNECEKTFSHRSSLRNHERI 590 5*****************988 PP == domain 5 score: 6.9 bits; conditional E-value: 0.0032 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C eCG f+ +L H +I T364935_1 599 CNECGKAFSHISALTQHHRI 618 *****************998 PP == domain 6 score: 3.7 bits; conditional E-value: 0.033 zf-C2H2_11 6 qCleCGlcftSqlsL 20 C+eCG f+ + L T364935_1 626 ECTECGKTFSRSTHL 640 5********976665 PP == domain 7 score: 7.8 bits; conditional E-value: 0.0017 zf-C2H2_11 2 estcqCleCGlcftSqlsLsRHl 24 e ++qC +C f + sL RH T364935_1 650 EKSYQCKQCRKVFCHSTSLIRHQ 672 679*******************6 PP == domain 8 score: 3.0 bits; conditional E-value: 0.052 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ ++ H +I T364935_1 682 ECNECGKAFSHTPAFIQHQRI 702 5********988888777776 PP == domain 9 score: -2.0 bits; conditional E-value: 1.9 zf-C2H2_11 7 CleCGlcftS 16 C CG f T364935_1 711 CNACGKAFNR 720 999**98865 PP == domain 10 score: 5.2 bits; conditional E-value: 0.011 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C eCG f+ + L Hl I T364935_1 739 CKECGKTFSRSTHLTEHLKI 758 *****************988 PP == domain 11 score: 3.9 bits; conditional E-value: 0.028 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHl 24 +qC eC f sL RH T364935_1 765 YQCNECQKLFCYRTSLIRHQ 784 6******************6 PP == domain 12 score: 14.1 bits; conditional E-value: 1.9e-05 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHlfI 26 +qC eCG f+ + +L +H +I T364935_1 793 YQCNECGKSFSLSSALTKHKRI 814 7******************998 PP == domain 13 score: 9.3 bits; conditional E-value: 0.00057 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 +qC++CG f + sL RH T364935_1 821 YQCTKCGDVFCHSTSLIRH 839 7****************** PP >> zf-met Zinc-finger of C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 1.5 3.9 5.8e+03 3 20 .. 487 504 .. 485 507 .. 0.87 2 ! 16.5 0.8 5e-06 0.0074 1 23 [. 513 535 .. 513 536 .. 0.91 3 ? 4.7 0.7 0.027 39 1 21 [. 541 561 .. 541 564 .. 0.92 4 ! 15.3 2.2 1.2e-05 0.018 1 23 [. 569 591 .. 569 592 .. 0.92 5 ? 0.8 0.9 0.43 6.4e+02 3 19 .. 599 615 .. 597 619 .. 0.92 6 ! 10.9 0.3 0.0003 0.44 1 19 [. 625 643 .. 625 645 .. 0.94 7 ? 1.8 5.3 0.21 3e+02 1 22 [. 653 674 .. 653 676 .. 0.89 8 ? 3.1 0.4 0.08 1.2e+02 1 22 [. 681 702 .. 681 704 .. 0.90 9 ! 9.3 1.0 0.0009 1.3 1 22 [. 709 730 .. 709 732 .. 0.90 10 ! 11.9 1.1 0.00014 0.21 1 21 [. 737 757 .. 737 759 .. 0.93 11 ? 4.8 3.8 0.024 36 1 22 [. 765 786 .. 765 788 .. 0.91 12 ? 0.9 0.6 0.4 6e+02 1 20 [. 793 812 .. 793 816 .. 0.76 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 3.9 zf-met 3 CelCnvsftsetqlksHl 20 C C + +t+ ++l +H T364935_1 487 CTECGKGYTCLASLTQHQ 504 999*******99999996 PP == domain 2 score: 16.5 bits; conditional E-value: 5e-06 zf-met 1 fyCelCnvsftsetqlksHlrgK 23 + C++C +sft+ ++l +H r + T364935_1 513 YECKICGKSFTRNSNLVQHQRIH 535 78*****************9865 PP == domain 3 score: 4.7 bits; conditional E-value: 0.027 zf-met 1 fyCelCnvsftsetqlksHlr 21 + C C + f+ t+l +H r T364935_1 541 YECNECGKAFSQSTNLIQHQR 561 78*****************87 PP == domain 4 score: 15.3 bits; conditional E-value: 1.2e-05 zf-met 1 fyCelCnvsftsetqlksHlrgK 23 + C C+++f+++++l++H r + T364935_1 569 YECNECEKTFSHRSSLRNHERIH 591 78*****************9965 PP == domain 5 score: 0.8 bits; conditional E-value: 0.43 zf-met 3 CelCnvsftsetqlksH 19 C C + f++ ++l +H T364935_1 599 CNECGKAFSHISALTQH 615 999***********999 PP == domain 6 score: 10.9 bits; conditional E-value: 0.0003 zf-met 1 fyCelCnvsftsetqlksH 19 + C C ++f++ t+l H T364935_1 625 YECTECGKTFSRSTHLIEH 643 78***************99 PP == domain 7 score: 1.8 bits; conditional E-value: 0.21 zf-met 1 fyCelCnvsftsetqlksHlrg 22 + C+ C ++f++ t+l H r T364935_1 653 YQCKQCRKVFCHSTSLIRHQRT 674 68999**************886 PP == domain 8 score: 3.1 bits; conditional E-value: 0.08 zf-met 1 fyCelCnvsftsetqlksHlrg 22 + C C + f++ ++ +H r T364935_1 681 YECNECGKAFSHTPAFIQHQRI 702 78*****************886 PP == domain 9 score: 9.3 bits; conditional E-value: 0.0009 zf-met 1 fyCelCnvsftsetqlksHlrg 22 + C +C + f++ ++l H r T364935_1 709 YECNACGKAFNRSAHLTEHQRT 730 78*****************886 PP == domain 10 score: 11.9 bits; conditional E-value: 0.00014 zf-met 1 fyCelCnvsftsetqlksHlr 21 + C+ C ++f++ t+l Hl+ T364935_1 737 YVCKECGKTFSRSTHLTEHLK 757 78*****************97 PP == domain 11 score: 4.8 bits; conditional E-value: 0.024 zf-met 1 fyCelCnvsftsetqlksHlrg 22 + C C++ f+ +t+l H r T364935_1 765 YQCNECQKLFCYRTSLIRHQRT 786 78*****************886 PP == domain 12 score: 0.9 bits; conditional E-value: 0.4 zf-met 1 fyCelCnvsftsetqlksHl 20 + C C +sf+ ++l H T364935_1 793 YQCNECGKSFSLSSALTKHK 812 78********9666666665 PP >> zinc_ribbon_15 zinc-ribbon family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 2.2 0.077 1.1e+02 39 79 .. 486 526 .. 477 529 .. 0.85 2 ! 10.8 2.9 0.00039 0.58 30 77 .. 533 580 .. 528 584 .. 0.86 3 ! 8.3 1.0 0.0024 3.5 35 77 .. 594 636 .. 588 643 .. 0.85 4 ! 9.0 5.5 0.0015 2.2 31 77 .. 646 692 .. 637 696 .. 0.87 5 ! 15.3 1.3 1.6e-05 0.024 25 77 .. 696 748 .. 692 753 .. 0.91 6 ! 7.2 4.8 0.0051 7.5 35 74 .. 734 773 .. 729 779 .. 0.87 7 ? 1.3 10.8 0.35 5.3e+02 27 74 .. 782 829 .. 759 836 .. 0.68 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.077 zinc_ribbon_15 39 acskCkslleaskelgkeiekkessekkeCknCgkeveeef 79 c++C++ ++ +l+++ +++ ++ +eCk Cgk+ + ++ T364935_1 486 LCTECGKGYTCLASLTQHQKTHIGEKPYECKICGKSFTRNS 526 599*******9999999999999999********9988765 PP == domain 2 score: 10.8 bits; conditional E-value: 0.00039 zinc_ribbon_15 30 kwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 ++++ ++ + c++C++ +++s++l ++ + ++ ++ +eC++C+k+ ++ T364935_1 533 RIHTGEKPYECNECGKAFSQSTNLIQHQRVHTGEKPYECNECEKTFSH 580 5666777789************9999999999999********99876 PP == domain 3 score: 8.3 bits; conditional E-value: 0.0024 zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 ++ + c++C++ +++ + l+++ + ++ ++ +eC +Cgk+ + T364935_1 594 EKPYPCNECGKAFSHISALTQHHRIHTGKKPYECTECGKTFSR 636 45567***********99999999999999********99876 PP == domain 4 score: 9.0 bits; conditional E-value: 0.0015 zinc_ribbon_15 31 wkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 ++++++ ++c++C++++ +s++l ++ ++++ ++ +eC++Cgk+ ++ T364935_1 646 IHSEEKSYQCKQCRKVFCHSTSLIRHQRTHTGEKPYECNECGKAFSH 692 56678899***************99999999999********98776 PP == domain 5 score: 15.3 bits; conditional E-value: 1.6e-05 zinc_ribbon_15 25 fipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkevee 77 fi+ ++++ ++ + c+ C++ ++ s +l+++ ++++ ++ ++Ck+Cgk+ + T364935_1 696 FIQHQRIHTGEKPYECNACGKAFNRSAHLTEHQRTHTGEKPYVCKECGKTFSR 748 8999999999999**************9999999999999********99876 PP == domain 6 score: 7.2 bits; conditional E-value: 0.0051 zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkessekkeCknCgke 74 ++ ++c++C+++++ s++l+++++ ++ ++ ++C++C+k T364935_1 734 EKPYVCKECGKTFSRSTHLTEHLKIHSCVKPYQCNECQKL 773 44567********************************985 PP == domain 7 score: 1.3 bits; conditional E-value: 0.35 zinc_ribbon_15 27 pvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgke 74 ++++ ++ ++c++C++ ++ s+ l+k+ + +++++ ++C +Cg + T364935_1 782 RHQRTHTGEKPYQCNECGKSFSLSSALTKHKRIHTRERPYQCTKCGDV 829 444555666667888888888888877777777777778888888866 PP >> XPA_N XPA protein N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.1 0.77 1.1e+03 4 9 .. 487 492 .. 485 494 .. 0.88 2 ? 1.0 0.1 0.28 4.2e+02 3 12 .. 514 523 .. 512 531 .. 0.84 3 ! 7.6 0.3 0.0023 3.4 3 14 .. 542 553 .. 540 554 .. 0.91 4 ? 4.9 0.2 0.016 24 3 12 .. 570 579 .. 568 587 .. 0.82 5 ? 3.8 0.0 0.036 54 4 12 .. 599 607 .. 597 616 .. 0.88 6 ! 7.1 0.1 0.0035 5.2 3 14 .. 626 637 .. 624 640 .. 0.89 7 ? 0.4 1.0 0.44 6.5e+02 3 14 .. 654 665 .. 653 666 .. 0.89 8 ? 5.2 0.2 0.013 19 3 12 .. 682 691 .. 680 693 .. 0.87 9 ? 3.5 0.0 0.045 66 3 14 .. 710 721 .. 708 726 .. 0.87 10 ! 7.9 0.1 0.0019 2.8 3 14 .. 738 749 .. 736 756 .. 0.86 11 ? 1.9 1.2 0.14 2.1e+02 3 12 .. 766 775 .. 764 776 .. 0.88 12 ? 5.6 0.2 0.01 15 3 14 .. 794 805 .. 792 811 .. 0.85 13 ? 1.7 0.6 0.17 2.5e+02 3 14 .. 822 833 .. 820 834 .. 0.89 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.77 XPA_N 4 CeeCgk 9 C eCgk T364935_1 487 CTECGK 492 *****9 PP == domain 2 score: 1.0 bits; conditional E-value: 0.28 XPA_N 3 kCeeCgkefl 12 +C+ Cgk f T364935_1 514 ECKICGKSFT 523 7999***996 PP == domain 3 score: 7.6 bits; conditional E-value: 0.0023 XPA_N 3 kCeeCgkefldS 14 +C eCgk+f +S T364935_1 542 ECNECGKAFSQS 553 8********998 PP == domain 4 score: 4.9 bits; conditional E-value: 0.016 XPA_N 3 kCeeCgkefl 12 +C eC+k+f T364935_1 570 ECNECEKTFS 579 8********5 PP == domain 5 score: 3.8 bits; conditional E-value: 0.036 XPA_N 4 CeeCgkefl 12 C eCgk+f T364935_1 599 CNECGKAFS 607 *******95 PP == domain 6 score: 7.1 bits; conditional E-value: 0.0035 XPA_N 3 kCeeCgkefldS 14 +C eCgk+f S T364935_1 626 ECTECGKTFSRS 637 8********988 PP == domain 7 score: 0.4 bits; conditional E-value: 0.44 XPA_N 3 kCeeCgkefldS 14 C++C k f+ S T364935_1 654 QCKQCRKVFCHS 665 5********988 PP == domain 8 score: 5.2 bits; conditional E-value: 0.013 XPA_N 3 kCeeCgkefl 12 +C eCgk+f T364935_1 682 ECNECGKAFS 691 8*******96 PP == domain 9 score: 3.5 bits; conditional E-value: 0.045 XPA_N 3 kCeeCgkefldS 14 +C Cgk+f S T364935_1 710 ECNACGKAFNRS 721 7********988 PP == domain 10 score: 7.9 bits; conditional E-value: 0.0019 XPA_N 3 kCeeCgkefldS 14 +C+eCgk+f S T364935_1 738 VCKECGKTFSRS 749 6********988 PP == domain 11 score: 1.9 bits; conditional E-value: 0.14 XPA_N 3 kCeeCgkefl 12 C eC+k f+ T364935_1 766 QCNECQKLFC 775 6******996 PP == domain 12 score: 5.6 bits; conditional E-value: 0.01 XPA_N 3 kCeeCgkefldS 14 C eCgk f S T364935_1 794 QCNECGKSFSLS 805 6********866 PP == domain 13 score: 1.7 bits; conditional E-value: 0.17 XPA_N 3 kCeeCgkefldS 14 C +Cg+ f+ S T364935_1 822 QCTKCGDVFCHS 833 6********988 PP >> C1_4 TFIIH C1-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.2 1.6 2.3e+03 19 35 .. 478 494 .. 471 497 .. 0.72 2 ? 3.7 2.6 0.045 67 3 49 .. 494 536 .. 486 539 .. 0.74 3 ? 9.1 3.0 0.00095 1.4 1 49 [. 542 592 .. 542 595 .. 0.84 4 ? 3.3 3.0 0.063 94 1 35 [. 570 606 .. 570 622 .. 0.78 5 ? 5.2 1.8 0.015 23 2 36 .. 599 635 .. 598 648 .. 0.75 6 ? 7.7 8.2 0.0026 3.9 1 48 [. 626 675 .. 626 678 .. 0.79 7 ? 2.0 0.5 0.16 2.4e+02 20 36 .. 675 691 .. 664 706 .. 0.74 8 ? 7.9 4.0 0.0022 3.2 1 51 [. 710 762 .. 710 764 .. 0.87 9 ? 4.6 9.9 0.024 35 2 48 .. 739 787 .. 738 790 .. 0.77 10 ? 3.5 6.2 0.052 77 1 48 [. 766 815 .. 766 818 .. 0.76 11 ? 7.1 5.4 0.0039 5.8 1 45 [. 794 840 .. 794 844 .. 0.71 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 1.6 C1_4 19 eeltssryrCekCkqdF 35 +t y C +C + + T364935_1 478 IYMTANPYLCTECGKGY 494 457788899****8765 PP == domain 2 score: 3.7 bits; conditional E-value: 0.045 C1_4 3 ygCqkkfpklkkkkkdeeltssryrCekCkqdFCiDCDvfiHesLHn 49 y+C+ ++++ +k+ ++ + y+C+ C + F + H+ +H+ T364935_1 494 YTCLASLTQHQKT----HIGEKPYECKICGKSFTRNSNLVQHQRIHT 536 5555555555544....467899**********99999999988885 PP == domain 3 score: 9.1 bits; conditional E-value: 0.00095 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLHn 49 eC C k+f ++++ ++++ + + y+C++C+++F + He +H+ T364935_1 542 ECNECGKAFSQSTNLIQHQRvhTGEKPYECNECEKTFSHRSSLRNHERIHT 592 5999*******9998777665577899**********98888888888885 PP == domain 4 score: 3.3 bits; conditional E-value: 0.063 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdF 35 eC C k+f + + ++e+ + + y C++C + F T364935_1 570 ECNECEKTFSHRSSLRNHERihTGEKPYPCNECGKAF 606 5999***99887765554444478899******9998 PP == domain 5 score: 5.2 bits; conditional E-value: 0.015 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdFC 36 C C k+f ++ +++++ + + y+C +C ++F T364935_1 599 CNECGKAFSHISALTQHHRihTGKKPYECTECGKTFS 635 88999999887766555544488999*******9996 PP == domain 6 score: 7.7 bits; conditional E-value: 0.0026 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 eC C k+f ++++ +++ + + y+C++C+++FC + H+ H T364935_1 626 ECTECGKTFSRSTHLIEHQGihSEEKSYQCKQCRKVFCHSTSLIRHQRTH 675 6999*****999987665544488899***********777766666666 PP == domain 7 score: 2.0 bits; conditional E-value: 0.16 C1_4 20 eltssryrCekCkqdFC 36 ++ + y+C++C + F T364935_1 675 HTGEKPYECNECGKAFS 691 456778******99995 PP == domain 8 score: 7.9 bits; conditional E-value: 0.0022 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLHnCp 51 eC +C k+f+++++ +++++ + + y C++C ++F + H ++H+C+ T364935_1 710 ECNACGKAFNRSAHLTEHQRthTGEKPYVCKECGKTFSRSTHLTEHLKIHSCV 762 6*********99988777664467789**********9999999999999996 PP == domain 9 score: 4.6 bits; conditional E-value: 0.024 C1_4 2 CygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 C C k+f ++++ +++ + + y+C++C++ FC + H+ H T364935_1 739 CKECGKTFSRSTHLTEHLKihSCVKPYQCNECQKLFCYRTSLIRHQRTH 787 89999999999988776553355667***********877666666666 PP == domain 10 score: 3.5 bits; conditional E-value: 0.052 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHesLH 48 +C Cqk f ++ +++ + + y+C++C + F + + H +H T364935_1 766 QCNECQKLFCYRTSLIRHQRthTGEKPYQCNECGKSFSLSSALTKHKRIH 815 599999999877765554443377889********999988888887777 PP == domain 11 score: 7.1 bits; conditional E-value: 0.0039 C1_4 1 eCygCqkkfpklkkkkkdee..ltssryrCekCkqdFCiDCDvfiHe 45 +C C k+f + +k+++ + + y+C kC ++FC + H+ T364935_1 794 QCNECGKSFSLSSALTKHKRihTRERPYQCTKCGDVFCHSTSLIRHQ 840 599999999866655444443377889***********766655555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (940 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 577 (0.0353857); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.84 # Mc/sec: 3201.41 // Query: T364935_2 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.64 # Mc/sec: 4197.37 // Query: T364935_3 [L=939] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (939 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 65 (0.00398626); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.59 # Mc/sec: 4553.08 // Query: T249685_1 [L=4328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 544 (0.033362); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.39s 00:00:02.15 Elapsed: 00:00:00.92 # Mc/sec: 13458.34 // Query: T249685_2 [L=4328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:00.75 # Mc/sec: 16508.90 // Query: T249685_3 [L=4328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 632 (0.0387587); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.36s 00:00:02.18 Elapsed: 00:00:00.85 # Mc/sec: 14566.67 // Query: T288555_1 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.70 # Mc/sec: 2975.26 // Query: T288555_2 [L=728] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.061 13.8 20.8 0.2 12.2 1.9 3.5 3 SlyX SlyX 1.6 8.2 26.1 0.045 13.2 1.6 3.1 3 PspA_IM30 PspA/IM30 family 7.6 6.6 17.6 4.8 7.2 8.1 2.5 2 Fib_alpha Fibrinogen alpha/beta chain family Domain annotation for each model (and alignments): >> SlyX SlyX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 1.4 5.2e-05 0.28 4 56 .. 149 201 .. 147 208 .. 0.91 2 ? 0.5 2.6 0.16 8.6e+02 29 48 .. 212 233 .. 205 254 .. 0.53 3 ? 12.2 1.9 3.7e-05 0.2 5 53 .. 299 333 .. 297 346 .. 0.58 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 5.2e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS SlyX 4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessga 56 +le LEi l e+ ++L++++ + + ++l +q+ +l+e+l++++ ++++ T288555_2 149 QLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEAS 201 799*****************************************999888765 PP == domain 2 score: 0.5 bits; conditional E-value: 0.16 HHHHHHHHHHHHHHHHHT-..X CS SlyX 29 qqqqidrlqrqlrllaerl..k 48 +q i++lq+++++ +e+l + T288555_2 212 KDQCIQKLQAEVKASQEQLiaQ 233 4455555555555555555221 PP == domain 3 score: 12.2 bits; conditional E-value: 3.7e-05 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS SlyX 5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 ++eL ++++ q + i +L +v+ e +++i++l++ + T288555_2 299 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEA--------------E 333 4556666666666666666666666666666654..............4 PP >> PspA_IM30 PspA/IM30 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 7.6 0.0038 21 93 134 .. 157 198 .. 151 227 .. 0.90 2 ? -1.8 5.4 0.31 1.7e+03 87 112 .. 228 253 .. 206 269 .. 0.57 3 ? 13.2 1.6 8.3e-06 0.045 100 135 .. 299 334 .. 291 336 .. 0.93 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0038 PspA_IM30 93 ikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134 +k++e++a+al++ql+ ++ + +l +q+++le k+e++ k T288555_2 157 LKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHK 198 5889*********************************98776 PP == domain 2 score: -1.8 bits; conditional E-value: 0.31 PspA_IM30 87 realaeikslekqaealetqlaqqrs 112 + ++a++ ++ek++++l+t la +++ T288555_2 228 EQLIAQKLKHEKKVKKLQTDLATANA 253 33455555566666666655555554 PP == domain 3 score: 13.2 bits; conditional E-value: 8.3e-06 PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakk 135 + +l+tq++ q + + ql++ le+ e+ki++l+a++ T288555_2 299 IMELSTQVSLQTERITQLKEVLEEKERKIQQLEAER 334 66899****************************997 PP >> Fib_alpha Fibrinogen alpha/beta chain family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 8.5 0.25 1.4e+03 19 123 .. 122 237 .. 120 268 .. 0.60 2 ? 7.2 8.1 0.00088 4.8 27 123 .. 231 332 .. 227 336 .. 0.66 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.25 CCHHHHCCCCCCCCCCHHHCCCCCCCCCCCC...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH......HHHHHHCCHHHHHHHHH CS Fib_alpha 19 gCglqdlllkyekdvkkdlekleneleeisn...stkeaeelvkeikdslrekqkskkdndnvikksskeleeeilr......lketidaqesnirvLqn 109 C+++ + k +++ + d ++ +l+++++ keaee k+++++l + +k++ + +++++++le + +++ + + + i++Lq T288555_2 122 ACQMASAEVKLNEKASLDTGQMAFTLAQLESleiCLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKeasggpYEKMVLVKDQCIQKLQA 221 5666666666666665555555544444443100457777777777777777777777766677777777663211122344478888888888888887 PP HHHHHHHHH..HHHHH CS Fib_alpha 110 vlesneqki..qkLeq 123 +++ ++++ qkL+ T288555_2 222 EVKASQEQLiaQKLKH 237 7776555542344543 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00088 CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH CS Fib_alpha 27 lkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn........dnvikksskeleeeilrlketidaqesnirvLqnvlesneqki 118 ++ + +k+++kl+ +l++++ t + el ++ik+ ++ k + +d+ +++ +++ i++l +++ q ++i +L++vle++e+ki T288555_2 231 IAQKLKHEKKVKKLQTDLATANAIT--VLELNEKIKTLYEGKPAPREDSllegfcggLPPVEEGDRKIS-LIMELSTQVSLQTERITQLKEVLEEKERKI 327 5566666677777777776655443..344444444444444444444222223333445666777777.8999************************** PP HHHHH CS Fib_alpha 119 qkLeq 123 q+Le T288555_2 328 QQLEA 332 ***97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (728 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1123 (0.0688704); expected 326.1 (0.02) Passed bias filter: 431 (0.026432); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.66 # Mc/sec: 3155.58 // Query: T288555_3 [L=727] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (727 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 4159.65 // Query: T258767_1 [L=289] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (289 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.61 # Mc/sec: 1355.38 // Query: T258767_2 [L=288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.57 # Mc/sec: 1420.55 // Query: T258767_3 [L=288] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (288 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 1445.47 // Query: T139340_1 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 6733.95 // Query: T139340_2 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.60 # Mc/sec: 5836.09 // Query: T139340_3 [L=1224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 5740.42 // Query: T293445_1 [L=1371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 5447.50 // Query: T293445_2 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.71 # Mc/sec: 5520.19 // Query: T293445_3 [L=1370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 6029.75 // Query: T172290_1 [L=6665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-25 90.1 3.2 1.6e-25 89.6 0.9 1.9 2 Transposase_22 L1 transposable element 6.3e-05 22.7 3.2 6.3e-05 22.7 3.2 2.9 2 zf-CCHC Zinc knuckle Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.1 0.03 2.5e+02 138 153 .. 5629 5644 .. 5627 5648 .. 0.89 2 ! 89.6 0.9 2e-29 1.6e-25 256 347 .. 5743 5834 .. 5722 5834 .. 0.92 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.03 ..XXHHHHHHHHHHHH CS Transposase_22 138 daslssrideleervs 153 sl++ri+++eer+s T172290_1 5629 HQSLNNRINQVEERIS 5644 579************9 PP == domain 2 score: 89.6 bits; conditional E-value: 2e-29 SSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEE.SSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 256 tkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsii.idGeikvfidktklrdylstrPal 347 k++ k++ilk +rek ++t+ G P+ l+ d+s etlk+rrew + +++lke++f Pr++yPak+ + ik f k+klrd++strP l T172290_1 5743 LKIKGKERILKVTREKKQITYNGSPVCLAVDFSVETLKSRREWHNTFKVLKERNFYPRIVYPAKIF-F*HEEKIKTFPGKQKLRDFISTRPVL 5834 57899***********************************************************85.455779******************87 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.7 3.2 7.7e-09 6.3e-05 2 18 .] 1656 1672 .. 1655 1672 .. 0.95 2 ? -0.4 1.0 0.16 1.3e+03 5 17 .. 1682 1693 .. 1678 1694 .. 0.75 Alignments for each domain: == domain 1 score: 22.7 bits; conditional E-value: 7.7e-09 CTSSSSSSSSTTTTSTS CS zf-CCHC 2 kCynCGepGHiardCpk 18 +Cy+C++ GH+a++Cp+ T172290_1 1656 ACYKCQKSGHQAKECPQ 1672 7***************7 PP == domain 2 score: -0.4 bits; conditional E-value: 0.16 SSSSSSSTTTTST CS zf-CCHC 5 nCGepGHiardCp 17 CG+p H+++dC+ T172290_1 1682 ICGGP-HWKSDCS 1693 56666.******7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.92u 0.36s 00:00:02.27 Elapsed: 00:00:00.92 # Mc/sec: 20725.47 // Query: T172290_2 [L=6665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.012 15.0 0.0 0.018 14.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.0 1.1e-06 0.018 138 181 .. 1534 1577 .. 1527 1577 .. 0.94 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.1e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ rl + + +t dp+ + + + + fi+qsa+di+ T172290_2 1534 KNPAQFMARLAATLKCFTALDPKRSKGHLILNIHFITQSAPDIK 1577 68****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.94u 0.38s 00:00:02.31 Elapsed: 00:00:00.77 # Mc/sec: 24762.90 // Query: T172290_3 [L=6665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.04u 0.43s 00:00:02.47 Elapsed: 00:00:00.85 # Mc/sec: 22432.27 // Query: T076695_1 [L=3383] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3383 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.68 # Mc/sec: 14232.63 // Query: T076695_2 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.29s 00:00:01.47 Elapsed: 00:00:00.63 # Mc/sec: 15357.66 // Query: T076695_3 [L=3382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3382 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 13437.95 // Query: T352147_1 [L=1072] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00057 19.9 57.3 0.62 10.1 0.1 16.1 17 Rsm1 Rsm1-like ------ inclusion threshold ------ 0.019 15.1 0.3 3.3e+02 1.4 0.0 6.6 10 B3R Poxviridae B3 protein Domain annotation for each model (and alignments): >> Rsm1 Rsm1-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.016 1.3e+02 45 62 .. 114 131 .. 103 135 .. 0.82 2 ? 3.2 0.2 0.011 92 45 75 .. 163 193 .. 150 200 .. 0.78 3 ! 3.7 0.5 0.0075 61 17 63 .. 198 251 .. 189 255 .. 0.74 4 ! 7.1 0.2 0.00065 5.3 18 75 .. 269 333 .. 260 343 .. 0.74 5 ? -1.6 0.0 0.34 2.8e+03 50 62 .. 357 369 .. 352 372 .. 0.81 6 ? 2.9 0.2 0.013 1.1e+02 47 76 .. 424 453 .. 414 468 .. 0.82 7 ? 0.8 0.1 0.064 5.2e+02 45 62 .. 471 488 .. 455 492 .. 0.78 8 ? 1.2 0.0 0.045 3.7e+02 45 62 .. 541 558 .. 529 563 .. 0.82 9 ? 2.1 0.0 0.024 1.9e+02 45 63 .. 590 608 .. 573 611 .. 0.82 10 ? 2.4 0.1 0.02 1.6e+02 46 74 .. 640 668 .. 625 676 .. 0.82 11 ? 2.6 0.0 0.017 1.4e+02 45 62 .. 688 705 .. 671 708 .. 0.80 12 ? 1.0 0.0 0.053 4.3e+02 45 62 .. 709 726 .. 704 730 .. 0.85 13 ? 0.3 0.4 0.086 7e+02 44 62 .. 724 742 .. 713 746 .. 0.65 14 ! 4.0 0.1 0.0064 52 19 63 .. 783 834 .. 772 839 .. 0.69 15 ? 0.3 0.7 0.085 7e+02 44 61 .. 913 930 .. 844 936 .. 0.69 16 ! 10.1 0.1 7.6e-05 0.62 18 65 .. 950 1000 .. 942 1003 .. 0.83 17 ? 2.2 0.0 0.023 1.9e+02 45 66 .. 1029 1050 .. 1020 1052 .. 0.82 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.016 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++++Pw T352147_1 114 VLALQCIDEHMHRTPWST 131 567999**********86 PP == domain 2 score: 3.2 bits; conditional E-value: 0.011 Rsm1 45 vkrldvleeHleycPwknakaqkelakesea 75 v +l+ +++H++ +Pw a ++a++++a T352147_1 163 VLSLQSIDQHMHTTPWSTRPAAYRSAHAHDA 193 678999**********998887777766665 PP == domain 3 score: 3.7 bits; conditional E-value: 0.0075 Rsm1 17 lglvsCeaCfrrlGLWmfksk..edgels......vvkrldvleeHleycPwkna 63 ++vs ++C rr G + + +++ +s v +l +++H++ +Pw T352147_1 198 PCSVSMSTCTRRPGVLALQYLpcRVS-MStctqhpGVLTLRSINKHMHTTPWSTR 251 46889999999999887654410444.3357788778899************865 PP == domain 4 score: 7.1 bits; conditional E-value: 0.00065 Rsm1 18 glvsCeaCfrrlGLWmfksk..edgels......vvkrldvleeHleycPwknakaqkelakesea 75 ++vs ++C rr G + + +++ +s v +l ++eH++ +Pw + + + a++++a T352147_1 269 CSVSMSTCTRRPGVLALQYLpcRVS-MStctqhpGVLTLRSINEHMHTTPWSTHPVEYRRAHAHDA 333 6889999999999887654410444.335778877889*************998777766666555 PP == domain 5 score: -1.6 bits; conditional E-value: 0.34 Rsm1 50 vleeHleycPwkn 62 ++eH++ +Pw T352147_1 357 RIDEHMHTTPWST 369 589********86 PP == domain 6 score: 2.9 bits; conditional E-value: 0.013 Rsm1 47 rldvleeHleycPwknakaqkelakeseak 76 +l+ ++eH++ +Pw a ++a++++a T352147_1 424 SLQRIDEHMHTTPWSTRPAAYRSAHAHDAL 453 68889*********9998887777776665 PP == domain 7 score: 0.8 bits; conditional E-value: 0.064 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_1 471 VLALQRIDEHMHTTPWST 488 456888999999999975 PP == domain 8 score: 1.2 bits; conditional E-value: 0.045 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_1 541 VLALQNIDEHMHTTPWST 558 567899**********86 PP == domain 9 score: 2.1 bits; conditional E-value: 0.024 Rsm1 45 vkrldvleeHleycPwkna 63 v l+ ++eH++ +Pw+ + T352147_1 590 VLALQRIDEHMHTTPWRTH 608 5678999*********975 PP == domain 10 score: 2.4 bits; conditional E-value: 0.02 Rsm1 46 krldvleeHleycPwknakaqkelakese 74 l+ +++H++ +Pw a ++a++++ T352147_1 640 LALQCIDQHMHTTPWSTRPAAYRSAHAHD 668 57899**********99887776666555 PP == domain 11 score: 2.6 bits; conditional E-value: 0.017 Rsm1 45 vkrldvleeHleycPwkn 62 v l++++eH++ +Pw T352147_1 688 VLALQLIDEHMHTTPWST 705 67899***********86 PP == domain 12 score: 1.0 bits; conditional E-value: 0.053 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_1 709 VLALQSIDEHMHTTPWST 726 567999**********86 PP == domain 13 score: 0.3 bits; conditional E-value: 0.086 Rsm1 44 vvkrldvleeHleycPwkn 62 +++l ++eH++ +Pw T352147_1 724 WSTPLWSIDEHMHTTPWST 742 4556667788888888865 PP == domain 14 score: 4.0 bits; conditional E-value: 0.0064 Rsm1 19 lvsCeaCfrrlGLWmfksk..edgels......vvkrldvleeHleycPwkna 63 v ++C rr G + + +++ +s v l+ ++eH++ +Pw T352147_1 783 RVLTSTCTRRPGVLALQYLpcRVS-MStctqhpGVLALQSIDEHMHTTPWSTR 834 555678888888776554310443.334677777889*************875 PP == domain 15 score: 0.3 bits; conditional E-value: 0.085 Rsm1 44 vvkrldvleeHleycPwk 61 v l+ ++eH++ Pw T352147_1 913 GVPALQRIDEHMHAMPWS 930 355677778888888886 PP == domain 16 score: 10.1 bits; conditional E-value: 7.6e-05 Rsm1 18 glvsCeaCfrrlGLWmfkskedgels...vvkrldvleeHleycPwknaka 65 ++vs ++C rr G + + +++ + + +l+ ++eH++ +Pw + a T352147_1 950 CSVSMSTCTRRPGVLALQRINEHMHTtpwSTLSLQRIDEHMHTTPWSTHPA 1000 789999*******99999887775557777889999**********98766 PP == domain 17 score: 2.2 bits; conditional E-value: 0.023 Rsm1 45 vkrldvleeHleycPwknakaq 66 v +l+ ++eH++ +Pw +a+ T352147_1 1029 VLTLQSIDEHMHTTPWSTWSAE 1050 567899**********987765 PP >> B3R Poxviridae B3 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.0 0.1 8.5e+02 51 81 .. 104 134 .. 101 136 .. 0.93 2 ? -1.7 0.0 0.36 2.9e+03 51 82 .. 153 184 .. 150 195 .. 0.88 3 ? -3.4 0.0 1.2 9.5e+03 51 80 .. 223 252 .. 221 254 .. 0.88 4 ? -3.5 0.0 1.2 1e+04 51 80 .. 293 322 .. 291 332 .. 0.87 5 ? -2.5 0.0 0.63 5.1e+03 52 82 .. 413 443 .. 411 456 .. 0.84 6 ? 0.5 0.0 0.076 6.2e+02 51 81 .. 461 491 .. 456 493 .. 0.92 7 ? 1.4 0.0 0.04 3.3e+02 51 81 .. 531 561 .. 520 564 .. 0.91 8 ? -3.8 0.0 1.6 1.3e+04 63 83 .. 690 710 .. 687 717 .. 0.80 9 ? 1.1 0.0 0.049 4e+02 51 81 .. 806 836 .. 798 839 .. 0.92 10 ? -1.0 0.0 0.22 1.8e+03 51 80 .. 904 933 .. 855 936 .. 0.76 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.1 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c q + al+ + e ws rp T352147_1 104 SMSTCTQRPGVLALQCIDEHMHRTPWSTRPA 134 6999*************************95 PP == domain 2 score: -1.7 bits; conditional E-value: 0.36 B3R 51 tmgsciqmdsmealeylselkesggwsprpem 82 +m +c q + +l+ + + + ws rp T352147_1 153 SMSTCTQRAGVLSLQSIDQHMHTTPWSTRPAA 184 68999***999******************975 PP == domain 3 score: -3.4 bits; conditional E-value: 1.2 B3R 51 tmgsciqmdsmealeylselkesggwsprp 80 +m +c q + +l +++ + ws rp T352147_1 223 SMSTCTQHPGVLTLRSINKHMHTTPWSTRP 252 5889999999999999999999999**999 PP == domain 4 score: -3.5 bits; conditional E-value: 1.2 B3R 51 tmgsciqmdsmealeylselkesggwsprp 80 +m +c q + +l ++e + ws +p T352147_1 293 SMSTCTQHPGVLTLRSINEHMHTTPWSTHP 322 589999999999999999999999999988 PP == domain 5 score: -2.5 bits; conditional E-value: 0.63 B3R 52 mgsciqmdsmealeylselkesggwsprpem 82 m +c q +l+ + e + ws rp T352147_1 413 MSTCTQRPGELSLQRIDEHMHTTPWSTRPAA 443 788999998899999999999*******975 PP == domain 6 score: 0.5 bits; conditional E-value: 0.076 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c + + al+ + e + ws rpe T352147_1 461 SMSTCTRRPGVLALQRIDEHMHTTPWSTRPE 491 68899999999*******************9 PP == domain 7 score: 1.4 bits; conditional E-value: 0.04 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c q + al+ + e + ws rp T352147_1 531 SMSTCTQHPGVLALQNIDEHMHTTPWSTRPA 561 6999*************************96 PP == domain 8 score: -3.8 bits; conditional E-value: 1.6 B3R 63 aleylselkesggwsprpemq 83 al+ + e + ws rp + T352147_1 690 ALQLIDEHMHTTPWSTRPAVL 710 7888889999999****9865 PP == domain 9 score: 1.1 bits; conditional E-value: 0.049 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c q + al+ + e + ws rp T352147_1 806 SMSTCTQHPGVLALQSIDEHMHTTPWSTRPA 836 6999*************************96 PP == domain 10 score: -1.0 bits; conditional E-value: 0.22 B3R 51 tmgsciqmdsmealeylselkesggwsprp 80 +m +c + + al+ + e + ws rp T352147_1 904 SMSTCTRSPGVPALQRIDEHMHAMPWSTRP 933 578888888888888888888888898888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1072 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5380.37 // Query: T352147_2 [L=1071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.3 12.2 3e+02 1.6 0.0 10.8 14 ATPase_gene1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor 0.54 10.3 56.9 0.26 11.4 0.1 15.6 16 Rsm1 Rsm1-like Domain annotation for each model (and alignments): >> ATPase_gene1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.7 5.7e+03 25 34 .. 87 96 .. 77 98 .. 0.81 2 ? 1.6 0.0 0.036 3e+02 25 37 .. 185 197 .. 178 200 .. 0.87 3 ? -1.6 0.0 0.35 2.8e+03 25 37 .. 255 267 .. 251 269 .. 0.89 4 ? 0.9 0.1 0.058 4.7e+02 24 35 .. 323 335 .. 318 336 .. 0.81 5 ? -1.4 0.0 0.3 2.5e+03 25 34 .. 374 383 .. 371 385 .. 0.92 6 ? -0.9 0.0 0.21 1.7e+03 25 35 .. 395 405 .. 393 407 .. 0.89 7 ? 1.1 0.0 0.05 4e+02 25 37 .. 444 456 .. 442 458 .. 0.89 8 ? -0.5 0.0 0.16 1.3e+03 25 36 .. 493 504 .. 488 509 .. 0.89 9 ? -0.7 0.0 0.18 1.5e+03 25 35 .. 563 573 .. 558 574 .. 0.89 10 ? 1.1 0.0 0.05 4e+02 25 37 .. 661 673 .. 659 675 .. 0.89 11 ? -0.1 0.0 0.12 1e+03 25 36 .. 747 758 .. 741 764 .. 0.87 12 ? -1.0 0.0 0.22 1.8e+03 25 35 .. 768 778 .. 766 779 .. 0.89 13 ? 0.1 0.0 0.1 8.3e+02 25 36 .. 887 898 .. 880 900 .. 0.88 14 ? -1.8 0.0 0.41 3.4e+03 25 35 .. 1002 1012 .. 1000 1013 .. 0.88 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.7 ATPase_gene1 25 LDkklgtspw 34 + k+++t+pw T352147_2 87 INKHMHTKPW 96 6789999999 PP == domain 2 score: 1.6 bits; conditional E-value: 0.036 ATPase_gene1 25 LDkklgtspwfli 37 +D++++t+pw ++ T352147_2 185 IDQHMHTTPWSTL 197 8*********987 PP == domain 3 score: -1.6 bits; conditional E-value: 0.35 ATPase_gene1 25 LDkklgtspwfli 37 +D++++ +pw ++ T352147_2 255 IDEHMHMTPWSTL 267 8*********987 PP == domain 4 score: 0.9 bits; conditional E-value: 0.058 ATPase_gene1 24 w.LDkklgtspwf 35 w +D++++t+pw T352147_2 323 WsIDEHMHTTPWS 335 459*********5 PP == domain 5 score: -1.4 bits; conditional E-value: 0.3 ATPase_gene1 25 LDkklgtspw 34 +D++++t+pw T352147_2 374 IDEHMHTTPW 383 8********9 PP == domain 6 score: -0.9 bits; conditional E-value: 0.21 ATPase_gene1 25 LDkklgtspwf 35 +D++++t+pw T352147_2 395 IDEHMHTTPWS 405 7*********6 PP == domain 7 score: 1.1 bits; conditional E-value: 0.05 ATPase_gene1 25 LDkklgtspwfli 37 +D++++t+pw ++ T352147_2 444 IDQHMHTTPWSTL 456 8*********987 PP == domain 8 score: -0.5 bits; conditional E-value: 0.16 ATPase_gene1 25 LDkklgtspwfl 36 +D++++t+pw + T352147_2 493 IDEHMHTTPWST 504 8*********65 PP == domain 9 score: -0.7 bits; conditional E-value: 0.18 ATPase_gene1 25 LDkklgtspwf 35 +D++++t+pw T352147_2 563 IDEHMHTTPWS 573 8*********5 PP == domain 10 score: 1.1 bits; conditional E-value: 0.05 ATPase_gene1 25 LDkklgtspwfli 37 +D++++t+pw ++ T352147_2 661 IDQHMHTTPWSTL 673 8*********987 PP == domain 11 score: -0.1 bits; conditional E-value: 0.12 ATPase_gene1 25 LDkklgtspwfl 36 +D++++t+pw + T352147_2 747 IDEHMHTTPWST 758 8*********76 PP == domain 12 score: -1.0 bits; conditional E-value: 0.22 ATPase_gene1 25 LDkklgtspwf 35 +D++++t+pw T352147_2 768 IDEHMHTTPWS 778 7*********5 PP == domain 13 score: 0.1 bits; conditional E-value: 0.1 ATPase_gene1 25 LDkklgtspwfl 36 +D++++t+pw + T352147_2 887 IDQHMHTTPWST 898 8*********76 PP == domain 14 score: -1.8 bits; conditional E-value: 0.41 ATPase_gene1 25 LDkklgtspwf 35 +D++ +t+pw T352147_2 1002 IDEHVHTTPWS 1012 7*********5 PP >> Rsm1 Rsm1-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.4 0.34 2.7e+03 52 65 .. 77 90 .. 71 103 .. 0.62 2 ? 1.8 0.0 0.029 2.4e+02 46 63 .. 131 148 .. 121 151 .. 0.85 3 ? -0.2 0.0 0.12 1e+03 46 61 .. 180 195 .. 162 200 .. 0.78 4 ? 0.4 0.0 0.085 6.9e+02 46 62 .. 250 266 .. 232 270 .. 0.80 5 ? 0.2 0.1 0.097 7.9e+02 48 65 .. 322 339 .. 308 354 .. 0.73 6 ? 6.3 0.9 0.0012 9.6 20 63 .. 357 407 .. 345 411 .. 0.75 7 ? 0.1 0.1 0.1 8.4e+02 45 62 .. 438 455 .. 422 459 .. 0.82 8 ? 11.4 0.1 3.1e-05 0.26 17 62 .. 473 525 .. 464 530 .. 0.87 9 ? 1.8 0.0 0.03 2.5e+02 45 65 .. 557 577 .. 540 580 .. 0.81 10 ? 0.4 1.5 0.08 6.5e+02 45 65 .. 655 675 .. 589 697 .. 0.79 11 ? 5.8 0.2 0.0016 13 20 63 .. 730 780 .. 716 784 .. 0.80 12 ? 1.7 0.0 0.031 2.6e+02 46 62 .. 833 849 .. 819 853 .. 0.84 13 ? 0.7 0.2 0.065 5.3e+02 45 61 .. 881 897 .. 861 904 .. 0.70 14 ? 1.0 0.1 0.055 4.5e+02 45 63 .. 930 948 .. 906 952 .. 0.82 15 ? 2.9 0.1 0.014 1.1e+02 18 62 .. 966 1013 .. 958 1017 .. 0.80 16 ? -2.8 0.0 0.79 6.5e+03 45 62 .. 1045 1062 .. 1030 1066 .. 0.78 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.34 Rsm1 52 eeHleycPwknaka 65 +eH++ Pw ++k T352147_2 77 DEHIHTMPWSINKH 90 67777777766543 PP == domain 2 score: 1.8 bits; conditional E-value: 0.029 Rsm1 46 krldvleeHleycPwkna 63 l+ ++eH++ +Pw+ T352147_2 131 LALQRIDEHMHITPWRTR 148 568899*********975 PP == domain 3 score: -0.2 bits; conditional E-value: 0.12 Rsm1 46 krldvleeHleycPwk 61 l+ +++H++ +Pw T352147_2 180 LALQRIDQHMHTTPWS 195 5678889999999997 PP == domain 4 score: 0.4 bits; conditional E-value: 0.085 Rsm1 46 krldvleeHleycPwkn 62 l ++eH++ +Pw T352147_2 250 LALRRIDEHMHMTPWST 266 56778999**9999975 PP == domain 5 score: 0.2 bits; conditional E-value: 0.097 Rsm1 48 ldvleeHleycPwknaka 65 l ++eH++ +Pw T352147_2 322 LWSIDEHMHTTPWSTRPV 339 66789********87654 PP == domain 6 score: 6.3 bits; conditional E-value: 0.0012 Rsm1 20 vsCeaCfrrlGLWmfkskedgels.......vvkrldvleeHleycPwkna 63 vs ++C rr G + + +++ + v l+ ++eH++ +Pw + T352147_2 357 VSTSTCTRRPGVLALQCIDEHMHTtpwsirsAVLALQSIDEHMHTTPWSTH 407 677888888888888776666444678888888889999999999999876 PP == domain 7 score: 0.1 bits; conditional E-value: 0.1 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ +++H++ +Pw T352147_2 438 VPALQRIDQHMHTTPWST 455 56789999********75 PP == domain 8 score: 11.4 bits; conditional E-value: 3.1e-05 Rsm1 17 lglvsCeaCfrrlGLWmfkskedgels.......vvkrldvleeHleycPwkn 62 ++vs ++C rr G + k+ +++ + v l+ ++eH++ +Pw T352147_2 473 PCSVSTSTCTRRPGVLALKHIDEHMHTtpwstrpAVLALQSINEHMHTAPWST 525 579999************9988886668999999999**************86 PP == domain 9 score: 1.8 bits; conditional E-value: 0.03 Rsm1 45 vkrldvleeHleycPwknaka 65 v l+ ++eH++ +Pw a T352147_2 557 VLALQRIDEHMHTTPWSTRPA 577 5678999*********98765 PP == domain 10 score: 0.4 bits; conditional E-value: 0.08 Rsm1 45 vkrldvleeHleycPwknaka 65 v l+ +++H++ +Pw a T352147_2 655 VPALQRIDQHMHTTPWSTLPA 675 556778888888888876555 PP == domain 11 score: 5.8 bits; conditional E-value: 0.0016 Rsm1 20 vsCeaCfrrlGLWmfkskedgels.......vvkrldvleeHleycPwkna 63 vs ++C +r G + + +++ + v l+ ++eH++ +Pw T352147_2 730 VSMSTCTQRPGVLALQRIDEHMHTtpwstrpAVLALQSIDEHMHTTPWSTR 780 66678999999888887777655578888888999999*********9876 PP == domain 12 score: 1.7 bits; conditional E-value: 0.031 Rsm1 46 krldvleeHleycPwkn 62 l+ ++eH++++Pw T352147_2 833 LALQRIDEHMHRTPWST 849 578899*********86 PP == domain 13 score: 0.7 bits; conditional E-value: 0.065 Rsm1 45 vkrldvleeHleycPwk 61 v +l+ +++H++ +Pw T352147_2 881 VLSLQRIDQHMHTTPWS 897 45677778888888886 PP == domain 14 score: 1.0 bits; conditional E-value: 0.055 Rsm1 45 vkrldvleeHleycPwkna 63 v l+ ++eH++ +Pw T352147_2 930 VLALQRIDEHMHATPWSTS 948 5678999*********865 PP == domain 15 score: 2.9 bits; conditional E-value: 0.014 Rsm1 18 glvsCeaCfrrlGLWmfkskedgels...vvkrldvleeHleycPwkn 62 ++vs ++C rr G s + + + v +l ++eH++ +Pw T352147_2 966 CSVSMSTCTRRPGVLSPCSVSMSTCTrrpGVLTLRSIDEHVHTTPWST 1013 788999999999988777777766667777889999**********86 PP == domain 16 score: -2.8 bits; conditional E-value: 0.79 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++e ++ +Pw T352147_2 1045 VLGLQSINEDMQVTPWST 1062 556888999999999976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 5375.35 // Query: T352147_3 [L=1071] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.043 13.9 0.8 1.3e+02 2.7 0.0 6.2 10 B3R Poxviridae B3 protein 0.15 12.0 0.0 61 3.6 0.0 3.7 3 EF1G Elongation factor 1 gamma, conserved domain 1.2 9.2 58.2 0.32 11.0 0.6 15.2 16 Rsm1 Rsm1-like Domain annotation for each model (and alignments): >> B3R Poxviridae B3 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.32 1.8e+03 52 81 .. 88 117 .. 75 119 .. 0.89 2 ? -3.1 0.0 1.5 7.9e+03 55 84 .. 189 218 .. 185 228 .. 0.74 3 ? -3.0 0.0 1.4 7.5e+03 51 80 .. 514 543 .. 512 545 .. 0.89 4 ? 1.2 0.0 0.069 3.7e+02 51 81 .. 563 593 .. 558 596 .. 0.93 5 ? -1.8 0.0 0.59 3.2e+03 51 83 .. 612 644 .. 609 655 .. 0.86 6 ? -3.9 0.0 2.6 1.4e+04 54 81 .. 664 691 .. 661 694 .. 0.79 7 ? 2.7 0.0 0.024 1.3e+02 51 85 .. 768 802 .. 759 813 .. 0.87 8 ? -2.1 0.0 0.71 3.9e+03 52 81 .. 839 868 .. 836 870 .. 0.88 9 ? -0.9 0.0 0.3 1.6e+03 51 81 .. 936 966 .. 933 969 .. 0.91 10 ? -3.3 0.0 1.7 9.2e+03 51 80 .. 1002 1031 .. 1001 1035 .. 0.88 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.32 B3R 52 mgsciqmdsmealeylselkesggwsprpe 81 + +c q + +l+ + e + ws rp T352147_3 88 ISTCTQSPGVPTLQSIDEHMHTTSWSTRPA 117 67899999999*****************96 PP == domain 2 score: -3.1 bits; conditional E-value: 1.5 B3R 55 ciqmdsmealeylselkesggwsprpemqe 84 c + + +l+ + e + ws rp + T352147_3 189 CTRRPGVLSLQRIDEHMHTTPWSTRPAVLA 218 666666677888899999999****98654 PP == domain 3 score: -3.0 bits; conditional E-value: 1.4 B3R 51 tmgsciqmdsmealeylselkesggwsprp 80 +m +c q + +l + e + ws rp T352147_3 514 SMSTCTQHPGVLTLWSIDEHMHTTPWSTRP 543 5889999999999999999999*****999 PP == domain 4 score: 1.2 bits; conditional E-value: 0.069 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c q + al+ + e + ws rp T352147_3 563 SMSTCTQHPGVLALQNIDEHMHTTPWSTRPA 593 6999*************************96 PP == domain 5 score: -1.8 bits; conditional E-value: 0.59 B3R 51 tmgsciqmdsmealeylselkesggwsprpemq 83 +m +c q + +l+ + + ws rp + T352147_3 612 SMSTCTQRTGVLSLQRIDQHMHMTPWSTRPAVY 644 68999999999999999999999******9865 PP == domain 6 score: -3.9 bits; conditional E-value: 2.6 B3R 54 sciqmdsmealeylselkesggwsprpe 81 +c + + +l+ ++e + ws rp T352147_3 664 TCTRRRGVLSLQRINEHTHTTPWSTRPA 691 5666777778889999999999**9996 PP == domain 7 score: 2.7 bits; conditional E-value: 0.024 B3R 51 tmgsciqmdsmealeylselkesggwsprpemqef 85 +m +c q + al+ + e + ws rp + + T352147_3 768 SMSTCTQHPGVLALQSIDEHMHTTPWSTRPAVLAL 802 6999**************************87655 PP == domain 8 score: -2.1 bits; conditional E-value: 0.71 B3R 52 mgsciqmdsmealeylselkesggwsprpe 81 m +c + al+ + e + ws rp T352147_3 839 MSTCTGHPGVLALQCIDEHMHTTPWSTRPA 868 788888889999****************96 PP == domain 9 score: -0.9 bits; conditional E-value: 0.3 B3R 51 tmgsciqmdsmealeylselkesggwsprpe 81 +m +c + + al+ + e + ws rp T352147_3 936 SMSTCTRRPGVPALQRIDEHMHATPWSTRPA 966 6899999999*******************96 PP == domain 10 score: -3.3 bits; conditional E-value: 1.7 B3R 51 tmgsciqmdsmealeylselkesggwsprp 80 +m +c q + al+ + + + ws +p T352147_3 1002 SMSTCTQHPGVLALQCIDQYIHTTPWSTHP 1031 589999999999***999999999999988 PP >> EF1G Elongation factor 1 gamma, conserved domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 0.025 1.4e+02 32 68 .. 148 185 .. 144 198 .. 0.79 2 ? 0.1 0.0 0.13 7.3e+02 32 67 .. 218 254 .. 209 260 .. 0.80 3 ? 3.6 0.0 0.011 61 32 74 .. 288 331 .. 278 335 .. 0.87 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.025 EF1G 32 alpyfwehfdkeeyslwkveYkyne.eltktfmssnli 68 al+ ++eh++ +s +eY+ + + ++ ++++ T352147_3 148 ALQCIHEHMHTTRWSTLPAEYRSAHaHDALEYSPCSVS 185 78999****************65550555599988875 PP == domain 2 score: 0.1 bits; conditional E-value: 0.13 EF1G 32 alpyfwehfdkeeyslwkveY.kyneeltktfmssnl 67 a++ + eh++ +s +eY + + + ++ +++ T352147_3 218 AMQSIDEHMHTTPWSTHPAEYqQAHAHDALEYSPCDV 254 899999***************5566666668888876 PP == domain 3 score: 3.6 bits; conditional E-value: 0.011 EF1G 32 alpyfwehfdkeeyslwkveY.kyneeltktfmssnliggffqr 74 a++ + eh++ +s +eY + + ++t ++ + +++ ++r T352147_3 288 AMQSIDEHMHTTPWSTHPAEYqRAHAHNTLEYSPCGVSTSTCTR 331 899999***************889999999****9998877666 PP >> Rsm1 Rsm1-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.6 5.9e-05 0.32 17 76 .. 181 247 .. 161 258 .. 0.84 2 ? 1.0 0.0 0.082 4.5e+02 46 62 .. 266 282 .. 249 288 .. 0.84 3 ? 3.4 0.2 0.014 77 46 75 .. 287 316 .. 281 327 .. 0.80 4 ? -0.2 0.1 0.19 1e+03 50 63 .. 340 353 .. 325 372 .. 0.73 5 ? 3.0 0.2 0.02 1.1e+02 19 62 .. 372 422 .. 359 427 .. 0.71 6 ? 2.8 0.1 0.021 1.2e+02 45 73 .. 454 482 .. 440 492 .. 0.79 7 ? 1.2 0.2 0.07 3.8e+02 43 65 .. 517 544 .. 491 547 .. 0.62 8 ? 1.3 0.1 0.062 3.4e+02 45 62 .. 573 590 .. 557 595 .. 0.81 9 ? 3.0 0.1 0.02 1.1e+02 44 74 .. 621 651 .. 609 662 .. 0.77 10 ? 2.0 0.2 0.039 2.1e+02 45 73 .. 671 699 .. 658 709 .. 0.76 11 ? 4.5 0.1 0.0064 35 18 63 .. 744 796 .. 735 807 .. 0.74 12 ? 1.6 0.0 0.054 2.9e+02 46 64 .. 800 818 .. 795 821 .. 0.82 13 ? 1.4 0.1 0.058 3.2e+02 45 62 .. 848 865 .. 832 868 .. 0.83 14 ? 0.2 0.0 0.15 8e+02 45 62 .. 897 914 .. 880 920 .. 0.76 15 ? 1.3 0.0 0.066 3.6e+02 45 62 .. 946 963 .. 928 968 .. 0.79 16 ? -2.7 0.1 1.1 6.1e+03 47 75 .. 1014 1042 .. 1006 1053 .. 0.70 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 5.9e-05 Rsm1 17 lglvsCeaCfrrlGLWmfkskedgels.......vvkrldvleeHleycPwknakaqkelakeseak 76 ++vs ++C rr G + +++ + v ++ ++eH++ +Pw + a+ + a++++a T352147_3 181 PCSVSISTCTRRPGVLSLQRIDEHMHTtpwstrpAVLAMQSIDEHMHTTPWSTHPAEYQQAHAHDAL 247 4689999*******99998877775557999999999****************99999888877765 PP == domain 2 score: 1.0 bits; conditional E-value: 0.082 Rsm1 46 krldvleeHleycPwkn 62 +l+ ++eH++ +Pw T352147_3 266 LSLQRIDEHMHTTPWST 282 678999*********86 PP == domain 3 score: 3.4 bits; conditional E-value: 0.014 Rsm1 46 krldvleeHleycPwknakaqkelakesea 75 ++ ++eH++ +Pw + a+ + a+++++ T352147_3 287 LAMQSIDEHMHTTPWSTHPAEYQRAHAHNT 316 567889**********99998877766655 PP == domain 4 score: -0.2 bits; conditional E-value: 0.19 Rsm1 50 vleeHleycPwkna 63 ++eH++ +Pw T352147_3 340 RIDEHMNTTPWSTR 353 57899999999865 PP == domain 5 score: 3.0 bits; conditional E-value: 0.02 Rsm1 19 lvsCeaCfrrlGLWmfkskedgels.......vvkrldvleeHleycPwkn 62 +v ++C +r G + + l v +l ++eH++ +Pw+ T352147_3 372 SVLTSTCTQRPGVFALQYLPCRVLMstctqhpGVLTLRSIDEHMHTTPWRT 422 566677777777777665544432235666666788999**********96 PP == domain 6 score: 2.8 bits; conditional E-value: 0.021 Rsm1 45 vkrldvleeHleycPwknakaqkelakes 73 v +l+ ++eH++ +Pw a + a+++ T352147_3 454 VLSLQRIDEHMHTTPWSTRPAAYRRAHAH 482 5678999*********9887766655555 PP == domain 7 score: 1.2 bits; conditional E-value: 0.07 Rsm1 43 s.....vvkrldvleeHleycPwknaka 65 + v +l ++eH++ +Pw a T352147_3 517 TctqhpGVLTLWSIDEHMHTTPWSTRPA 544 244554566778899********98765 PP == domain 8 score: 1.3 bits; conditional E-value: 0.062 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_3 573 VLALQNIDEHMHTTPWST 590 567999**********86 PP == domain 9 score: 3.0 bits; conditional E-value: 0.02 Rsm1 44 vvkrldvleeHleycPwknakaqkelakese 74 v +l+ +++H++ +Pw a ++a++++ T352147_3 621 GVLSLQRIDQHMHMTPWSTRPAVYRSAHAHD 651 5678999**********98877666665555 PP == domain 10 score: 2.0 bits; conditional E-value: 0.039 Rsm1 45 vkrldvleeHleycPwknakaqkelakes 73 v +l+ ++eH + +Pw a + a+++ T352147_3 671 VLSLQRINEHTHTTPWSTRPAAYRRAHAH 699 5678999*********9877766655555 PP == domain 11 score: 4.5 bits; conditional E-value: 0.0064 Rsm1 18 glvsCeaCfrrlGLWmfksk..edgels......vvkrldvleeHleycPwkna 63 ++v ++C rr G + + +++ +s v l+ ++eH++ +Pw T352147_3 744 CSVLTSTCTRRPGVLALQYLpcRVS-MStctqhpGVLALQSIDEHMHTTPWSTR 796 6777889999999876554410444.335777777889*************865 PP == domain 12 score: 1.6 bits; conditional E-value: 0.054 Rsm1 46 krldvleeHleycPwknak 64 l+ ++eH++ +Pw T352147_3 800 LALQSIDEHMHTTPWSTRP 818 57899**********8765 PP == domain 13 score: 1.4 bits; conditional E-value: 0.058 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_3 848 VLALQCIDEHMHTTPWST 865 567999**********86 PP == domain 14 score: 0.2 bits; conditional E-value: 0.15 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ Pw T352147_3 897 VPALQRIDEHMHTKPWST 914 567888899999999976 PP == domain 15 score: 1.3 bits; conditional E-value: 0.066 Rsm1 45 vkrldvleeHleycPwkn 62 v l+ ++eH++ +Pw T352147_3 946 VPALQRIDEHMHATPWST 963 567899999**9999986 PP == domain 16 score: -2.7 bits; conditional E-value: 1.1 Rsm1 47 rldvleeHleycPwknakaqkelakesea 75 l+ +++ ++ +Pw + a+ + a+++++ T352147_3 1014 ALQCIDQYIHTTPWSTHPAEYRRAHAHNT 1042 57777788888888887777666655554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1071 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 4941.85 // Query: T004129_1 [L=1407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1372 (0.0841408); expected 326.1 (0.02) Passed bias filter: 318 (0.019502); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 20 (0.00122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.37s 00:00:01.77 Elapsed: 00:00:00.72 # Mc/sec: 5590.54 // Query: T004129_2 [L=1406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 332 (0.0203606); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.75 # Mc/sec: 5363.10 // Query: T004129_3 [L=1406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.74 # Mc/sec: 5435.58 // Query: T200710_1 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.69 # Mc/sec: 7856.92 // Query: T200710_2 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.003 17.6 0.0 0.013 15.6 0.0 2.0 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 7.8e-07 0.013 4 117 .. 652 761 .. 651 763 .. 0.86 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 7.8e-07 rve 4 pgelwqvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytsk.afrefla.elgirvsftrpg 100 p +wq+D+ +++ + +g++++l+ +d++++l++++ ++ d++++i++l+ + +g+ p++v + + + +t + + la +++i+++f p+ T200710_2 652 PLTRWQIDYIgPLP--KSQGYTHVLTDVDTATGLLFTYTCRVA-DQQNTIQALKYLCPLYGH--PLAVETERRTHFT-G*H-LQHLA*QMDIKWRFRVPY 744 7789******6666..8888***********************.**********99999999..9*******99999.444.445577788888888888 PP rve 101 rpqdnGkvErfnrtlkd 117 + q G++ + n++lk+ T200710_2 745 NLQAAGMIGQYNGLLKN 761 88888888888888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.66 # Mc/sec: 8214.05 // Query: T200710_3 [L=1895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-13 50.9 0.0 2.6e-13 50.3 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.3 0.0 1.6e-17 2.6e-13 6 139 .. 447 575 .. 444 578 .. 0.87 Alignments for each domain: == domain 1 score: 50.3 bits; conditional E-value: 1.6e-17 EEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHH CS RNase_H 6 vYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelae 105 +YtDGs++g +a av ++ ++i ++++ q+ + aEL Av +++ + + + ++i S v++g+t w+ +wk ++ +q p+ + +++ T200710_3 447 WYTDGSSRGAITAWTAVAVQPST--DTIWFETRCGQSSQWAELRAVWMVITK--EVTLMVICINSWVVYQGLTLWLTTWKIQKL-LVGHQ-PIWGQATWQ 540 8*****99765555555555544..7999999999****************9..889999*******************99888.55566.9******** PP HHHHCHCSSEEEEEE-SCCSSS..CHHHHHHHHHHH CS RNase_H 106 llkelakkkkvqlkhvkgHaGd..pkgNemaDrlAk 139 l e+ ++k+v++ hv gH p gN +aD lAk T200710_3 541 DLWEMGHQKQVTVYHVSGHMPLatP-GNDEADALAK 575 *******************766546.*********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 8605.19 // Query: T099737_1 [L=3185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1439 (0.0882497); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.58u 0.43s 00:00:03.01 Elapsed: 00:00:01.07 # Mc/sec: 8515.65 // Query: T099737_2 [L=3185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3185 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.70 # Mc/sec: 13016.78 // Query: T099737_3 [L=3184] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3184 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 161 (0.00987367); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.30s 00:00:01.65 Elapsed: 00:00:00.68 # Mc/sec: 13395.42 // Query: T277485_1 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.26s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 14212.02 // Query: T277485_2 [L=2931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.62 # Mc/sec: 13524.34 // Query: T277485_3 [L=2930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.69 # Mc/sec: 12148.16 // Query: T336910_1 [L=640] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (640 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.71 # Mc/sec: 2578.78 // Query: T336910_2 [L=639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.59 # Mc/sec: 3098.42 // Query: T336910_3 [L=639] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (639 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.54 # Mc/sec: 3385.32 // Query: T101399_1 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.63 # Mc/sec: 5748.91 // Query: T101399_2 [L=1266] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1266 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.67 # Mc/sec: 5405.69 // Query: T101399_3 [L=1265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1265 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.64 # Mc/sec: 5654.61 // Query: T257451_1 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.60 # Mc/sec: 4205.42 // Query: T257451_2 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.66 # Mc/sec: 3823.11 // Query: T257451_3 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 3818.77 // Query: T293988_1 [L=2454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 10029.25 // Query: T293988_2 [L=2454] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2454 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.34s 00:00:01.54 Elapsed: 00:00:00.71 # Mc/sec: 9888.00 // Query: T293988_3 [L=2453] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2453 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.28s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 10025.17 // Query: T323210_1 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-97 317.1 444.4 3.1e-17 62.4 8.0 40.8 41 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.2 0.15 2.4e+03 38 47 .. 39 48 .. 38 52 .. 0.81 2 ? -0.2 0.1 0.069 1.1e+03 8 34 .. 52 77 .. 47 79 .. 0.86 3 ! 34.7 7.0 8.5e-13 1.4e-08 3 49 .. 79 124 .. 77 125 .. 0.96 4 ! 31.2 7.0 1.1e-11 1.7e-07 1 38 [. 130 166 .. 130 176 .. 0.93 5 ! 24.1 4.7 1.7e-09 2.7e-05 5 38 .. 177 209 .. 171 218 .. 0.92 6 ! 23.0 5.5 3.8e-09 6.3e-05 5 37 .. 221 252 .. 220 253 .. 0.97 7 ! 10.9 3.2 2.3e-05 0.37 1 34 [. 249 277 .. 249 288 .. 0.77 8 ! 22.8 16.3 4.3e-09 7.1e-05 1 49 [. 291 338 .. 291 339 .. 0.99 9 ! 9.1 1.8 8.1e-05 1.3 8 40 .. 352 383 .. 350 386 .. 0.84 10 ! 16.5 5.8 4.1e-07 0.0066 2 33 .. 377 407 .. 376 411 .. 0.96 11 ! 10.1 1.5 4.1e-05 0.67 18 50 .] 404 436 .. 404 436 .. 0.95 12 ! 19.0 0.3 6.5e-08 0.0011 23 48 .. 492 517 .. 461 517 .. 0.80 13 ! 24.2 0.9 1.6e-09 2.6e-05 29 50 .] 519 540 .. 519 540 .. 0.99 14 ! 12.3 0.4 8.3e-06 0.13 31 47 .. 542 558 .. 542 560 .. 0.95 15 ! 4.8 1.5 0.0018 30 14 39 .. 557 582 .. 557 587 .. 0.89 16 ! 8.7 2.1 0.00011 1.8 4 30 .. 592 617 .. 590 620 .. 0.89 17 ! 6.8 0.5 0.00044 7.2 3 18 .. 623 637 .. 622 641 .. 0.87 18 ! 22.8 14.3 4.5e-09 7.3e-05 1 50 [] 642 690 .. 642 690 .. 0.91 19 ! 8.7 2.2 0.00011 1.8 21 38 .. 682 699 .. 674 707 .. 0.82 20 ! 24.9 8.0 9.8e-10 1.6e-05 2 50 .] 696 753 .. 696 753 .. 0.81 21 ! 27.5 7.3 1.5e-10 2.5e-06 20 50 .] 744 774 .. 743 774 .. 0.96 22 ! 16.1 8.4 5.3e-07 0.0087 16 49 .. 761 794 .. 760 794 .. 0.94 23 ! 3.1 12.1 0.0061 99 17 50 .] 783 828 .. 780 828 .. 0.82 24 ? 2.4 4.7 0.01 1.6e+02 14 38 .. 813 837 .. 812 851 .. 0.79 25 ! 8.1 13.3 0.00017 2.7 2 49 .. 857 915 .. 856 915 .. 0.68 26 ? 1.4 22.3 0.021 3.5e+02 10 42 .. 919 983 .. 889 1002 .. 0.71 27 ! 33.5 4.4 1.9e-12 3.2e-08 19 50 .] 1016 1047 .. 1005 1047 .. 0.95 28 ! 6.0 13.4 0.00075 12 1 41 [. 1052 1089 .. 1052 1099 .. 0.72 29 ? -1.5 0.4 0.17 2.7e+03 5 39 .. 1112 1160 .. 1112 1167 .. 0.72 30 ? -2.1 0.1 0.27 4.4e+03 30 44 .. 1178 1192 .. 1176 1197 .. 0.81 31 ? -4.0 1.0 1 1.6e+04 24 36 .. 1265 1277 .. 1243 1285 .. 0.44 32 ? -3.0 0.6 0.49 8.1e+03 6 22 .. 1304 1333 .. 1303 1345 .. 0.68 33 ? -1.6 0.1 0.18 3e+03 31 46 .. 1446 1465 .. 1429 1466 .. 0.78 34 ! 13.3 10.0 4.2e-06 0.068 17 50 .] 1490 1523 .. 1468 1523 .. 0.85 35 ! 27.7 3.3 1.3e-10 2.1e-06 17 50 .] 1523 1556 .. 1522 1556 .. 0.96 36 ! 62.4 8.0 1.9e-21 3.1e-17 1 50 [] 1561 1610 .. 1561 1610 .. 0.99 37 ! 12.3 0.9 8.3e-06 0.13 25 44 .. 1606 1625 .. 1605 1626 .. 0.91 38 ! 10.6 5.1 2.8e-05 0.45 24 49 .. 1637 1661 .. 1631 1662 .. 0.80 39 ! 4.1 2.0 0.0031 50 26 39 .. 1660 1675 .. 1659 1684 .. 0.73 40 ! 2.6 0.7 0.0092 1.5e+02 29 50 .] 1686 1708 .. 1686 1708 .. 0.86 41 ! 20.9 14.2 1.7e-08 0.00028 1 39 [. 1713 1773 .. 1713 1780 .. 0.95 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.15 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323210_1 39 LPPGSLSRPR 48 6889999985 PP == domain 2 score: -0.2 bits; conditional E-value: 0.069 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsa 34 +p q + ++ ++gl rp+ L++ sa T323210_1 52 SQPPQ-TKLMTHNGLFRPIPYLTAVSA 77 67778.999**********99999877 PP == domain 3 score: 34.7 bits; conditional E-value: 8.5e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323210_1 79 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 124 689*******.************************************ PP == domain 4 score: 31.2 bits; conditional E-value: 1.1e-11 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323210_1 130 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 166 9***********.***********************86 PP == domain 5 score: 24.1 bits; conditional E-value: 1.7e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323210_1 177 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 209 899*****.***********************98 PP == domain 6 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpk 37 P+s++p q ++ l+++gls+ s++L+vAs+Gp T323210_1 221 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPA 252 9*******.***********************6 PP == domain 7 score: 10.9 bits; conditional E-value: 2.3e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323210_1 249 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 277 9***********5444.....4446888888887 PP == domain 8 score: 22.8 bits; conditional E-value: 4.3e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323210_1 291 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 338 9***********.************************************ PP == domain 9 score: 9.1 bits; conditional E-value: 8.1e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.pp 40 + Lq a l + g+ rps+ L AsaGp l ++ T323210_1 352 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaSQ 383 57799..889999****************99544 PP == domain 10 score: 16.5 bits; conditional E-value: 4.1e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAs 33 gpA as+ Lq +++l++ g rps++Lp++s T323210_1 377 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASS 407 9**********.******************98 PP == domain 11 score: 10.1 bits; conditional E-value: 4.1e-05 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +as+l r s+ L+vA Gp+ ++srPs CL T323210_1 404 PASSLNRHSSSLTVAHLGPTHDCRAISRPSACL 436 68999****************999********9 PP == domain 12 score: 19.0 bits; conditional E-value: 6.5e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323210_1 492 LQTKLSLPVASTGQNCPQVSLSRANS 517 488999*****************976 PP == domain 13 score: 24.2 bits; conditional E-value: 1.6e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323210_1 519 LPVASAGQNRPQVSLFTPSSCL 540 8********************9 PP == domain 14 score: 12.3 bits; conditional E-value: 8.3e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323210_1 542 VASAGAKLPQVGLSRPS 558 8***************6 PP == domain 15 score: 4.8 bits; conditional E-value: 0.0018 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323210_1 557 PSLLLPEGMYRPSLCLTADSPCPALP 582 678999************99999997 PP == domain 16 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323210_1 592 APAFRQLVR-AQLLPHGGLFSPNSCLL 617 9*****555.***************95 PP == domain 17 score: 6.8 bits; conditional E-value: 0.00044 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323210_1 623 SAPASHWPLE-AQLMP 637 6********9.99887 PP == domain 18 score: 22.8 bits; conditional E-value: 4.5e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323210_1 642 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 690 8***********.***************99876666667899*******9 PP == domain 19 score: 8.7 bits; conditional E-value: 0.00011 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323210_1 682 SLCGPSSCLPVASVGQAR 699 5667***********986 PP == domain 20 score: 24.9 bits; conditional E-value: 9.8e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323210_1 696 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 753 678888888888888888852.44311567899*************************9 PP == domain 21 score: 27.5 bits; conditional E-value: 1.5e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323210_1 744 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 774 79***************************87 PP == domain 22 score: 16.1 bits; conditional E-value: 5.3e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323210_1 761 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 794 56899***************************97 PP == domain 23 score: 3.1 bits; conditional E-value: 0.0061 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323210_1 783 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 828 67899***9637*********9989888888888888888888765 PP == domain 24 score: 2.4 bits; conditional E-value: 0.01 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323210_1 813 PGLLPPEGLHRPSLSLTADSPRPAS 837 6689999*******99998877765 PP == domain 25 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 2 gpAPasrrpLqa...........paslqasglsrpsaqLpvAsaGpkl...ppagLsrPssC 49 gpAPa+++pLqa ++ ++ gl p+ + +s++ + pp++Ls Pss+ T323210_1 857 GPAPACQWPLQAhgahssqrpfqAQFFPSGGLCGPR---TSSSRPLQThlqPPGVLSGPSSS 915 9*************9998765554444444444443...23444444488888999999886 PP == domain 26 score: 1.4 bits; conditional E-value: 0.021 DUF4705 10 pLqa................................paslqasglsrpsaqLpvAsaGpklppag 42 +Lqa ++ ++ glsr s+++p+As+Gpk +p++ T323210_1 919 RLQArllppnnlfglsacaspgglgrptasssqapqAQVRPHGGLSRISSCPPMASPGPKWSPVS 983 45556666666666666666666777777777775577779********************5543 PP == domain 27 score: 33.5 bits; conditional E-value: 1.9e-12 DUF4705 19 asglsrpsaqLpvAsaGpklppagLsrPssCL 50 as++++++aqLp+A++Gp+l+ a+L++P++CL T323210_1 1016 ASSFGSTPAQLPAAFVGPELSRAKLFAPAYCL 1047 589****************************9 PP == domain 28 score: 6.0 bits; conditional E-value: 0.00075 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 +gpA a ++pLq +++ +++ p+a +As+ p ++p+ T323210_1 1052 TGPALAVEQPLQ-AQLSPPR--RPPGAKSLPASRQPACSPV 1089 8***********.6666666..4556666666666666665 PP == domain 29 score: -1.5 bits; conditional E-value: 0.17 DUF4705 5 PasrrpLqa.............paslqasglsr.psaqLpvAsaGpklp 39 Pas++ L p+ l+ +++s p+ ++ A +G p T323210_1 1112 PASHWLLPR*ersa*apcltpaPPMLREVCMSPlPRTGPCHAERGRREP 1160 7788866657777787888888999999999843777777777776555 PP == domain 30 score: -2.1 bits; conditional E-value: 0.27 DUF4705 30 pvAsaGpklppagLs 44 +A+a+p+l+++g s T323210_1 1178 CLAPAPPTLREVGVS 1192 579999999999865 PP == domain 31 score: -4.0 bits; conditional E-value: 1 DUF4705 24 rpsaqLpvAsaGp 36 p + + +++a+p T323210_1 1265 PPTLIPCLTPAPP 1277 3444444444444 PP == domain 32 score: -3.0 bits; conditional E-value: 0.49 DUF4705 6 asrrpLqa.............paslqasgl 22 as+rpL p++l ++ T323210_1 1304 ASHRPLPH*qrsa*apcltpaPPTLTEVSV 1333 788888666677776666666666666655 PP == domain 33 score: -1.6 bits; conditional E-value: 0.18 DUF4705 31 vAsaGpkl....ppagLsrP 46 A++Gp p++gL rP T323210_1 1446 EATVGPADalllPELGLYRP 1465 58888876667799999999 PP == domain 34 score: 13.3 bits; conditional E-value: 4.2e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323210_1 1490 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1523 45568**************************987 PP == domain 35 score: 27.7 bits; conditional E-value: 1.3e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323210_1 1523 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1556 8999****************************87 PP == domain 36 score: 62.4 bits; conditional E-value: 1.9e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323210_1 1561 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1610 9***********************************************98 PP == domain 37 score: 12.3 bits; conditional E-value: 8.3e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323210_1 1606 SSSSLPAASAGLSCPQVGLE 1625 6899**************96 PP == domain 38 score: 10.6 bits; conditional E-value: 2.8e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323210_1 1637 GPSSV-LLASPGAKLPRVSLSRPSSS 1661 45555.579***************97 PP == domain 39 score: 4.1 bits; conditional E-value: 0.0031 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323210_1 1660 SSCLPVASFGPAQlmA 1675 89*********86443 PP == domain 40 score: 2.6 bits; conditional E-value: 0.0092 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323210_1 1686 LLVASSGPELdLQSAFAGPASCL 1708 789*******8677888999998 PP == domain 41 score: 20.9 bits; conditional E-value: 1.7e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323210_1 1713 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1773 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.67 # Mc/sec: 7895.04 // Query: T323210_2 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-64 211.3 457.7 1.1e-15 57.4 9.2 39.4 36 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 2.9 1.8e-07 0.0029 29 48 .. 40 59 .. 31 59 .. 0.95 2 ! 11.8 3.8 1.2e-05 0.2 2 43 .. 67 108 .. 67 113 .. 0.90 3 ! 25.5 6.7 6.4e-10 1e-05 1 36 [. 119 153 .. 119 156 .. 0.94 4 ! 13.1 9.5 4.7e-06 0.077 3 50 .] 153 221 .. 151 221 .. 0.91 5 ! 4.3 7.3 0.0026 43 2 47 .. 195 230 .. 194 237 .. 0.69 6 ! 12.3 2.7 8.6e-06 0.14 3 26 .. 240 262 .. 239 269 .. 0.91 7 ! 14.9 4.9 1.2e-06 0.02 10 39 .. 289 317 .. 289 319 .. 0.96 8 ! 19.7 0.5 4e-08 0.00065 22 47 .. 333 358 .. 327 359 .. 0.91 9 ! 15.2 12.5 1e-06 0.017 8 38 .. 372 401 .. 365 417 .. 0.88 10 ! 16.0 5.0 6e-07 0.0098 9 48 .. 458 496 .. 451 498 .. 0.94 11 ? 1.6 0.9 0.018 3e+02 7 27 .. 498 518 .. 497 525 .. 0.65 12 ! 6.5 4.3 0.00054 8.8 3 29 .. 536 562 .. 513 565 .. 0.90 13 ! 14.7 1.4 1.4e-06 0.023 1 30 [. 566 594 .. 566 597 .. 0.96 14 ? 0.8 4.7 0.032 5.2e+02 18 50 .] 601 637 .. 598 637 .. 0.80 15 ! 9.8 3.3 5e-05 0.81 8 43 .. 638 672 .. 637 677 .. 0.89 16 ! 20.6 15.6 2.2e-08 0.00036 2 49 .. 685 731 .. 684 731 .. 0.94 17 ? -1.8 0.0 0.21 3.5e+03 7 15 .. 732 739 .. 732 744 .. 0.81 18 ! 10.3 0.6 3.6e-05 0.59 1 15 [. 747 760 .. 747 767 .. 0.82 19 ! 21.1 14.2 1.5e-08 0.00024 1 39 [. 768 818 .. 768 821 .. 0.93 20 ! 24.4 25.1 1.4e-09 2.2e-05 1 50 [] 822 905 .. 822 905 .. 0.95 21 ! 8.8 7.6 0.0001 1.7 29 50 .] 905 926 .. 903 926 .. 0.96 22 ! 21.3 2.9 1.3e-08 0.00022 17 50 .] 926 959 .. 926 959 .. 0.96 23 ! 57.4 9.2 7e-20 1.1e-15 1 50 [] 964 1011 .. 964 1011 .. 0.99 24 ? -1.6 1.7 0.18 3e+03 5 24 .. 1012 1042 .. 1012 1047 .. 0.63 25 ! 5.6 10.5 0.001 17 5 50 .] 1045 1102 .. 1041 1102 .. 0.90 26 ? -2.7 0.5 0.4 6.6e+03 5 23 .. 1128 1159 .. 1124 1164 .. 0.73 27 ? -4.2 3.3 1 1.6e+04 6 42 .. 1178 1217 .. 1175 1225 .. 0.57 28 ? -2.1 1.0 0.26 4.3e+03 6 23 .. 1271 1301 .. 1259 1324 .. 0.63 29 ? -7.2 6.6 1 1.6e+04 6 36 .. 1320 1380 .. 1316 1390 .. 0.47 30 ? -0.6 10.3 0.091 1.5e+03 19 39 .. 1502 1523 .. 1490 1535 .. 0.69 31 ! 7.9 3.9 0.0002 3.3 1 25 [. 1550 1573 .. 1550 1576 .. 0.94 32 ! 12.9 0.4 5.6e-06 0.091 2 15 .. 1584 1596 .. 1584 1603 .. 0.82 33 ! 12.3 19.8 8.1e-06 0.13 1 37 [. 1604 1683 .. 1604 1685 .. 0.99 34 ! 2.7 14.6 0.0085 1.4e+02 1 46 [. 1680 1725 .. 1680 1726 .. 0.57 35 ! 14.2 4.1 2.1e-06 0.034 16 38 .. 1739 1761 .. 1737 1770 .. 0.86 36 ! 2.5 0.3 0.0096 1.6e+02 2 22 .. 1758 1777 .. 1757 1780 .. 0.86 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.8e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323210_2 40 LPAASPGPELSPVSLHRPSS 59 9*****************98 PP == domain 2 score: 11.8 bits; conditional E-value: 1.2e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323210_2 67 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 108 788********.***********************99765555 PP == domain 3 score: 25.5 bits; conditional E-value: 6.4e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323210_2 119 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 153 9***********.*******************9755 PP == domain 4 score: 13.1 bits; conditional E-value: 4.7e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323210_2 153 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 221 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.0026 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323210_2 195 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 230 899********.7777777777777777655433.........333 PP == domain 6 score: 12.3 bits; conditional E-value: 8.6e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323210_2 240 PALASRWPLQ-AQLLSQDVISRPK 262 9*********.******9999995 PP == domain 7 score: 14.9 bits; conditional E-value: 1.2e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323210_2 289 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 317 9**.************************98 PP == domain 8 score: 19.7 bits; conditional E-value: 4e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323210_2 333 FGPVPVQLTATNVGPKLPQVKLSRPA 358 78889********************5 PP == domain 9 score: 15.2 bits; conditional E-value: 1e-06 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323210_2 372 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 401 69***.**********************975 PP == domain 10 score: 16.0 bits; conditional E-value: 6e-07 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 r Lq + ++++s lsr s ++s+ p+l p+gLsrPss T323210_2 458 RTLQ-AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 496 88**.*********************************98 PP == domain 11 score: 1.6 bits; conditional E-value: 0.018 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323210_2 498 SQWPLQAKIVLKSASPGPTPS 518 577777655666666665554 PP == domain 12 score: 6.5 bits; conditional E-value: 0.00054 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323210_2 536 PALVCKWPLQEQNCLKSASPGPASCFP 562 9999******99999999999988776 PP == domain 13 score: 14.7 bits; conditional E-value: 1.4e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323210_2 566 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 594 8***********.****************9 PP == domain 14 score: 0.8 bits; conditional E-value: 0.032 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323210_2 601 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 637 56777788888888886656779999**********8 PP == domain 15 score: 9.8 bits; conditional E-value: 5e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323210_2 638 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 672 57777.999**********************98877 PP == domain 16 score: 20.6 bits; conditional E-value: 2.2e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323210_2 685 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 731 9********995..4689999**************************97 PP == domain 17 score: -1.8 bits; conditional E-value: 0.21 DUF4705 7 srrpLqapa 15 srrpLq ++ T323210_2 732 SRRPLQ-AQ 739 79****.66 PP == domain 18 score: 10.3 bits; conditional E-value: 3.6e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323210_2 747 PGPAPASRCPLQA-Q 760 9***********4.4 PP == domain 19 score: 21.1 bits; conditional E-value: 1.5e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323210_2 768 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 818 9*******************************9.89**********876666 PP == domain 20 score: 24.4 bits; conditional E-value: 1.4e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323210_2 822 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 905 8*********************************************6515699*****************************98 PP == domain 21 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323210_2 905 LPASSPGPALPPGCVSRPDCCL 926 9********************9 PP == domain 22 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323210_2 926 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 959 6889****************************87 PP == domain 23 score: 57.4 bits; conditional E-value: 7e-20 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp++p++g srP CL T323210_2 964 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPSRPEVGVSRP--CL 1011 9*********************************************..97 PP == domain 24 score: -1.6 bits; conditional E-value: 0.18 DUF4705 5 PasrrpLqa............paslqasglsr 24 Pas++ L a p+ l +s++ r T323210_2 1012 PASKQALLAqllpssqppl*aPNFLEPSSS-R 1042 788888886777666666666666666633.3 PP == domain 25 score: 5.6 bits; conditional E-value: 0.001 DUF4705 5 PasrrpLqa..........paslqasglsrpsaqLpvAsa..GpklppagLsrPssCL 50 asr+p qa p s ++ gl ps +Lp+ s+ + lp +gL+ P CL T323210_2 1045 TASRWPVQAqlwl*nslcrPSSRPHGGLPGPSPCLPPGSPraAQFLPHGGLLMPNACL 1102 69***********************************996225666***********8 PP == domain 26 score: -2.7 bits; conditional E-value: 0.4 DUF4705 5 PasrrpLqa.............paslqasgls 23 as+rpL pa l+ +g s T323210_2 1128 LASHRPLPC*ersa*apclapaPAMLREVGVS 1159 58888887677777777777777777777665 PP == domain 27 score: -4.2 bits; conditional E-value: 1 DUF4705 6 asrrpLqa......paslqasglsrpsaqLpvAsaGpklppag 42 as+rpL ++ l p + + +++a+p+l ++g T323210_2 1178 ASHRPLPR*erla*APCLTLA---PPTLTPCLTPAPPTLTEVG 1217 566666555555563333322...4555555666666665555 PP == domain 28 score: -2.1 bits; conditional E-value: 0.26 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323210_2 1271 ASHRPLPC*qrsa*apcltpaPPTLTEVSVS 1301 5555554477777777777777777776665 PP == domain 29 score: -7.2 bits; conditional E-value: 1 DUF4705 6 asrrpLqa.............................paslqasgls.rpsaqLpvAsaGp 36 as+rpL p++l + p + + ++ a+p T323210_2 1320 ASHRPLPH*qrsa*apcltpapph*qrsa*apcltpaPPTLTPCLTAaPPTLTPCLTLAPP 1380 5666665555566665555555555556663333333333333221102223333444444 PP == domain 30 score: -0.6 bits; conditional E-value: 0.091 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323210_2 1502 SRRPLRAQLFLPAASLGPTPaS 1523 6777788888888888887752 PP == domain 31 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323210_2 1550 PGPGQASRWPRQ-AQLLPSDGISRS 1573 9***********.********9985 PP == domain 32 score: 12.9 bits; conditional E-value: 5.6e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323210_2 1584 GPAWASRRPLQA-Q 1596 9**********4.4 PP == domain 33 score: 12.3 bits; conditional E-value: 8.1e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323210_2 1604 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1683 9***************************************************************.***************7 PP == domain 34 score: 2.7 bits; conditional E-value: 0.0085 DUF4705 1 PgpAPasrrpLqa.....................paslqasglsrpsaqLpvAsaGpklppagLsrP 46 PgpA +++pLqa ++ +++s gLs P T323210_2 1680 PGPAFDFWWPLQAqnltssrplqarlpasrrparAQPQPHS---------------------GLSTP 1725 9***********44444444444444444444444444444.....................44444 PP == domain 35 score: 14.2 bits; conditional E-value: 2.1e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323210_2 1739 LLPFGRFGRPSSCLPVASLGPAH 1761 578889***************87 PP == domain 36 score: 2.5 bits; conditional E-value: 0.0096 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323210_2 1758 GPAHSSQRPFQ-APFFPSGSL 1777 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.72 # Mc/sec: 7346.77 // Query: T323210_3 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-19 68.2 62.0 1.5e-11 44.2 11.0 39.3 34 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.9 1.0 0.0002 3.2 4 24 .. 37 57 .. 36 73 .. 0.90 2 ? -0.9 15.9 0.11 1.8e+03 7 36 .. 114 142 .. 87 143 .. 0.73 3 ! 23.1 4.0 3.6e-09 5.9e-05 1 31 [. 140 169 .. 140 182 .. 0.88 4 ! 16.4 2.8 4.5e-07 0.0073 1 35 [. 183 216 .. 183 225 .. 0.90 5 ! 44.2 11.0 9.1e-16 1.5e-11 1 50 [] 227 275 .. 227 275 .. 0.99 6 ! 23.3 0.8 3.1e-09 5.1e-05 28 50 .] 274 296 .. 273 296 .. 0.97 7 ? -0.9 12.0 0.11 1.9e+03 20 41 .. 372 398 .. 301 401 .. 0.88 8 ? 0.9 3.4 0.03 4.9e+02 5 26 .. 402 422 .. 402 423 .. 0.94 9 ! 4.9 0.8 0.0017 27 28 47 .. 486 505 .. 478 508 .. 0.85 10 ? 1.7 1.4 0.017 2.8e+02 7 27 .. 508 527 .. 506 533 .. 0.90 11 ? -0.2 0.1 0.069 1.1e+03 7 24 .. 529 545 .. 527 548 .. 0.87 12 ! 9.6 9.3 5.6e-05 0.91 6 38 .. 549 591 .. 545 597 .. 0.89 13 ! 10.6 6.3 2.9e-05 0.47 1 33 [. 599 630 .. 599 630 .. 0.95 14 ! 3.7 2.8 0.0039 64 19 43 .. 637 662 .. 634 664 .. 0.80 15 ! 15.9 12.7 6.4e-07 0.01 1 38 [. 652 709 .. 652 716 .. 0.87 16 ? 2.1 14.2 0.013 2.1e+02 1 49 [. 705 762 .. 705 763 .. 0.95 17 ? -0.8 8.6 0.11 1.7e+03 7 41 .. 784 816 .. 782 816 .. 0.86 18 ? 0.1 11.7 0.055 9e+02 3 26 .. 813 835 .. 802 835 .. 0.92 19 ! 15.4 2.0 9.2e-07 0.015 14 36 .. 846 868 .. 840 873 .. 0.91 20 ? 2.1 0.0 0.013 2.1e+02 27 39 .. 871 883 .. 870 884 .. 0.90 21 ! 6.0 11.7 0.00078 13 1 38 [. 878 924 .. 878 932 .. 0.85 22 ! 16.2 2.3 4.9e-07 0.0081 1 26 [. 953 977 .. 953 979 .. 0.95 23 ? -11.2 23.2 1 1.6e+04 9 42 .. 1038 1070 .. 986 1091 .. 0.65 24 ? 0.4 0.4 0.044 7.2e+02 29 44 .. 1160 1175 .. 1159 1180 .. 0.88 25 ? -4.4 4.2 1 1.6e+04 13 42 .. 1201 1255 .. 1190 1258 .. 0.59 26 ? -2.2 0.3 0.27 4.5e+03 6 23 .. 1287 1317 .. 1286 1337 .. 0.69 27 ? -0.9 0.1 0.11 1.8e+03 6 13 .. 1336 1343 .. 1332 1358 .. 0.74 28 ? -2.8 0.2 0.43 7e+03 4 12 .. 1388 1396 .. 1388 1438 .. 0.76 29 ! 3.0 0.9 0.0068 1.1e+02 8 27 .. 1492 1510 .. 1489 1512 .. 0.87 30 ! 11.2 10.9 1.8e-05 0.3 14 48 .. 1551 1597 .. 1546 1598 .. 0.74 31 ? -5.7 12.4 1 1.6e+04 9 45 .. 1601 1646 .. 1600 1651 .. 0.62 32 ? -5.0 14.3 1 1.6e+04 7 46 .. 1651 1703 .. 1650 1706 .. 0.80 33 ? -0.6 2.9 0.087 1.4e+03 16 34 .. 1717 1735 .. 1703 1741 .. 0.62 34 ! 22.9 3.2 4.2e-09 6.9e-05 2 36 .. 1747 1780 .. 1746 1787 .. 0.91 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0002 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323210_3 37 APTSRQPLQAQNFLQSASTDQ 57 9********999999987655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323210_3 114 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 142 345555.**********************9 PP == domain 3 score: 23.1 bits; conditional E-value: 3.6e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323210_3 140 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 169 9***********.*****************9 PP == domain 4 score: 16.4 bits; conditional E-value: 4.5e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323210_3 183 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 216 57*******9996..7*******************9 PP == domain 5 score: 44.2 bits; conditional E-value: 9.1e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323210_3 227 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 275 8***********.************************************9 PP == domain 6 score: 23.3 bits; conditional E-value: 3.1e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323210_3 274 CLLVAYEGPKSPQVDLSRPSSCL 296 9*********************9 PP == domain 7 score: -0.9 bits; conditional E-value: 0.11 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323210_3 372 NSLCRPCSCLPGASPGPALaswrlPQA 398 5799*************9965555555 PP == domain 8 score: 0.9 bits; conditional E-value: 0.03 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323210_3 402 PACQQPQQ-AQLFPHSGPFRPN 422 9*******.*********9996 PP == domain 9 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323210_3 486 LLQLASPDQALPPSGLYRPK 505 6889***************6 PP == domain 10 score: 1.7 bits; conditional E-value: 0.017 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323210_3 508 SSQPLQ-GQLLATGGFCRPKS 527 689***.***********976 PP == domain 11 score: -0.2 bits; conditional E-value: 0.069 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323210_3 529 SSQPLH-TQLLSVSGLCR 545 78****.*****999866 PP == domain 12 score: 9.6 bits; conditional E-value: 5.6e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323210_3 549 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 591 788999999999999999********************99888 PP == domain 13 score: 10.6 bits; conditional E-value: 2.9e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323210_3 599 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 630 8***********.*****9999999******98 PP == domain 14 score: 3.7 bits; conditional E-value: 0.0039 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323210_3 637 SRGLNGPSPCLSAASTGPAStSQWAL 662 789999999*****999976566555 PP == domain 15 score: 15.9 bits; conditional E-value: 6.4e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323210_3 652 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 709 688888888888888888888888888888888**********************876 PP == domain 16 score: 2.1 bits; conditional E-value: 0.013 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323210_3 705 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 762 89999999*************9899******************************997 PP == domain 17 score: -0.8 bits; conditional E-value: 0.11 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323210_3 784 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 816 679***77789********8..8889999999886 PP == domain 18 score: 0.1 bits; conditional E-value: 0.055 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323210_3 813 RPPASRRPAQ-AQPQPHSGLSTPS 835 669*******.************7 PP == domain 19 score: 15.4 bits; conditional E-value: 9.2e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323210_3 846 PKLLPLGRFGRPSSRLPVASSGP 868 8999******************9 PP == domain 20 score: 2.1 bits; conditional E-value: 0.013 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323210_3 871 SFLTTAFPGPVFP 883 79********997 PP == domain 21 score: 6.0 bits; conditional E-value: 0.00078 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323210_3 878 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 924 7888889**************766651678***************86 PP == domain 22 score: 16.2 bits; conditional E-value: 4.9e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323210_3 953 PGPGQASRWPLQ-DQLLPSDGVSRPQ 977 9***********.9***********7 PP == domain 23 score: -11.2 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppag 42 + L+ + +l+ gl rps++ AsaGp l p + T323210_3 1038 QALR-ARLLPLGGLYRPSSGCRTASAGPALAPTA 1070 4455.77788888888888888888888773332 PP == domain 24 score: 0.4 bits; conditional E-value: 0.044 DUF4705 29 LpvAsaGpklppagLs 44 + +A+a+p+l+++gLs T323210_3 1160 PCLAPAPPTLREVGLS 1175 56799*********97 PP == domain 25 score: -4.4 bits; conditional E-value: 1 DUF4705 13 a........................paslqas.glsrpsaqLpvAsaGpklppag 42 p++l + + p + + +++a+p l +++ T323210_3 1201 R*plashqplpr*qrsa*apcltlaPPTLTPClTPVPPTLIPCLTPAPPMLTEVS 1255 4444444444447778887777777555554313446666666777777776665 PP == domain 26 score: -2.2 bits; conditional E-value: 0.27 DUF4705 6 asrrpLqa.............paslqasgls 23 as+rpL p++l ++ s T323210_3 1287 ASHRPLPH*qrsa*apcltpaPPTLTEVSVS 1317 7888887777777877777777777777666 PP == domain 27 score: -0.9 bits; conditional E-value: 0.11 DUF4705 6 asrrpLqa 13 as+rpL++ T323210_3 1336 ASHRPLHT 1343 999***95 PP == domain 28 score: -2.8 bits; conditional E-value: 0.43 DUF4705 4 APasrrpLq 12 A as+rpL T323210_3 1388 ALASHRPLP 1396 789999994 PP == domain 29 score: 3.0 bits; conditional E-value: 0.0068 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323210_3 1492 ARPLQ-THLQPPGVLSGPSS 1510 69***.99999999999987 PP == domain 30 score: 11.2 bits; conditional E-value: 1.8e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323210_3 1551 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1597 555699*******************6666666666666666666666 PP == domain 31 score: -5.7 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323210_3 1601 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1646 7888.666666654222222277778886577888865558888888 PP == domain 32 score: -5.0 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323210_3 1651 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1703 67999998888643344444678999999999999999999999999999999 PP == domain 33 score: -0.6 bits; conditional E-value: 0.087 DUF4705 16 slqasglsrpsaqLpvAsa 34 sl a ++ +s++L++As+ T323210_3 1717 SLTADSPRPASSRLTAASP 1735 4566666666666766664 PP == domain 34 score: 22.9 bits; conditional E-value: 4.2e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323210_3 1747 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1780 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.65 # Mc/sec: 8137.96 // Query: T260355_1 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 14.9 0.1 0.018 14.4 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 1.1e-06 0.018 1 28 [. 2024 2056 .. 2024 2060 .] 0.92 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.1e-06 EE-TT......S-EEE......-THHHHCTB-- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliak 28 ipK+g ++++Rpisl+++d k+lnk+i T260355_1 2024 IPKPGrdttiKENFRPISLMNIDAKILNKIILA 2056 8999999*99*******************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.64 # Mc/sec: 9208.30 // Query: T260355_2 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-08 31.9 0.3 1.8e-07 30.9 0.3 1.5 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 0.028 14.6 0.0 0.048 13.8 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.3 2.2e-11 1.8e-07 22 118 .. 1632 1740 .. 1622 1741 .. 0.82 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 2.2e-11 Exo_endo_phos_2 22 lekllselksk...kiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng..ssiiDltltsdnlaks 103 ++++ls++++ ++ii+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + s iD +l s+ l+ + T260355_2 1632 IKQVLSDPQRYldsNTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQVDLIDIyrtLHPKSTeYTFFSAPHhtYSKIDHILGSKALLSK 1723 566667776666679***************9888879***************9966666444444477766666568*************** PP Exo_endo_phos_2 104 ..leleeedlgSDHrpi 118 ++ ++++SDH++i T260355_2 1724 crRSEIITNCLSDHSAI 1740 99777789******998 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 5.9e-06 0.048 67 113 .] 1604 1737 .. 1451 1737 .. 0.79 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5.9e-06 EEEECSEEEEE................................EEEEEE-SS.......................................... CS xxxxxxxxxxx................................xxxxxxxxx.......................................... RF Exo_endo_phos 67 avlsrfpltsl................................vivlGDfNa.......................................... 86 ++++ ++++ i++GDfN+ T260355_2 1604 YIMVKGSIQQEeltilnicapntgaprfikqvlsdpqryldsnTIIMGDFNTplstldrstrqkvnkdtqelnsalhqvdlidiyrtlhpkste 1697 44444444333555666666666666666666666666666669********999999999999999999999999999999999999999999 PP ............-BEEEEEEH.HHHTTEEEEEEECCH.SSB CS ............xxxxxxxxx.xxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ............rlDrilask.elatersgvldepla.SDH 113 +D+il sk l++ r+++ ++ + SDH T260355_2 1698 ytffsaphhtysKIDHILGSKaLLSKCRRSEIIT-NClSDH 1737 99999999999999******94444444444333.335988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 618 (0.0379002); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.63 # Mc/sec: 9354.46 // Query: T260355_3 [L=2060] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-129 431.0 27.3 2.8e-128 427.7 27.3 2.0 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.079 13.1 0.0 0.17 12.0 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 427.7 27.3 3.5e-132 2.8e-128 1 359 [. 1149 1475 .. 1149 1484 .. 0.94 Alignments for each domain: == domain 1 score: 427.7 bits; conditional E-value: 3.5e-132 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke sssPat e+++ ++df+elr+e+++++ y el+e+i++++ke+e ++k+ +e n ek+l T260355_3 1149 MGKKQ---SRKTGNSKKQSASPPPKECSSSPAT--EQSWRENDFDELREEGFRRSSYCELQEEIQTEGKEVEnFEKNSDEcitritNREKCL- 1235 79999...9************************..*************************************99999998444444444444. PP ..................XXXXXXXXXXXXXXXXX..................XXHHHH..HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssri..deleervsaaedeieeidr.evkerekrkkil 176 kel+elk+k++el++e++ sl+ d+lee vsa+e e++e+ + e+k+rekr+k++ T260355_3 1236 -----------------KELMELKAKARELHEECR------------------SLR--Sq*DQLEEMVSAMEHELNEM-K*EGKFREKRIKRN 1290 .................59****************..................665..52559**************9.5559********** PP HHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHH CS Transposase_22 177 eqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavr 269 eqslq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++an++i ei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+r T260355_3 1291 EQSLQEIWDYVKRPNLRLIGVPESDRENGTKLENTLQDIIQENFPNLARQANIQIHEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 1383 ********************************************************************************************* PP HHS-EEETTEEEEEEE---.HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXS CS Transposase_22 270 ekGrvtlkGkPirltadls.aetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkd 359 ekGrvt kGkPirltad aetl+arrew+++ +ilkek+fqPr++yPakls+ ++Geik+f dk+ lrd++++rPalk+llk+ ++er++ T260355_3 1384 EKGRVTHKGKPIRLTAD-R*AETLQARREWGPISNILKEKNFQPRISYPAKLSFKSEGEIKYFTDKQTLRDFVTIRPALKELLKQalNMERNN 1475 ****************9.777****************************************************************88888876 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 2.1e-05 0.17 1 68 [. 1519 1584 .. 1519 1596 .. 0.77 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.1e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvav 68 lt Nvng ++ + ++ +la+++k++++ ++qE++ ++ +l+ + ++ + ++++ gva+ T260355_3 1519 LTLNVNG----LNAPIKRHRLANWIKSQEPSMCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAI 1584 699****....7778899*******************998777666655566444555556666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2060 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 198 (0.0121428); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.74 # Mc/sec: 7963.93 // Query: T235308_1 [L=861] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (861 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.66 # Mc/sec: 3732.08 // Query: T235308_2 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 4316.34 // Query: T235308_3 [L=860] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (860 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.53 # Mc/sec: 4642.10 // Query: T239486_1 [L=1093] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1093 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 6253.77 // Query: T239486_2 [L=1092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.68 # Mc/sec: 4594.16 // Query: T239486_3 [L=1092] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-52 175.8 1.8 1.6e-51 174.9 1.8 1.5 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 0.004 16.6 0.3 0.0085 15.6 0.3 1.5 1 DUF4417 Domain of unknown function (DUF4417) ------ inclusion threshold ------ 0.5 10.7 0.0 0.5 10.7 0.0 3.2 3 YlbE YlbE-like protein Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 174.9 1.8 2.9e-55 1.6e-51 1 222 [] 425 681 .. 425 681 .. 0.95 Alignments for each domain: == domain 1 score: 174.9 bits; conditional E-value: 2.9e-55 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrk 91 ipK+g ++++Rpisl+++d k+lnk++a+r++++++kl++++q+gf pg + l ++ ++++++++ k k+++++++D +kaFd+++ ++ l++ T239486_3 425 IPKPGrdttkKENFRPISLMNIDAKILNKILANRIQQYIKKLIHHDQVGFIPGMQGLFNIrksiNVIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKT 524 899999999999***************************************************99999999999999*********************** PP GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.HHHHH CS RVT_1 92 ltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.keelq 181 l++++++ + +++i +++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aD ++++ ++ ++q T239486_3 525 LNKLGIDGTYLKIITAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKeikgiqlgkEEVKLSLFADNMTVYLENpMVSAQ 624 ******************************99*********************************99***************************6666** PP HHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 182 elleaveewlkesglkinpeKtklvlf...........sg.....kseevkyLGvtl 222 +ll+ ++++ k sg+kin +K+ ++l+ s+ s+++kyLG++l T239486_3 625 NLLKLISNFSKVSGYKINVQKSYAFLYannrqtesqimSElpftiASKRIKYLGIHL 681 *************************99999988877761156678*********986 PP >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.3 1.6e-06 0.0085 47 111 .. 750 819 .. 739 822 .. 0.78 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.6e-06 DUF4417 47 DyqferlwnsPekylaa..Lkql...savlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 +f+ +wn+ + +a+ L+q +++ Pdf ly+ a + +w y++r i ++ ++ ++iP++ T239486_3 750 KTTFKFIWNQKRARIAKaiLSQKnkaGGMTLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 819 5678888885444333212333344589*****************************************8 PP >> YlbE YlbE-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.8 1.9 3 1.6e+04 11 20 .. 794 803 .. 792 809 .. 0.72 2 ? 10.7 0.0 9.3e-05 0.5 3 30 .. 861 888 .. 859 890 .. 0.90 3 ? 4.9 0.3 0.0062 34 23 50 .. 957 984 .. 951 986 .. 0.86 Alignments for each domain: == domain 1 score: -4.8 bits; conditional E-value: 3 YlbE 11 pyWYrkLnRn 20 +WY + nR+ T239486_3 794 TAWYWYQNRD 803 5788888887 PP == domain 2 score: 10.7 bits; conditional E-value: 9.3e-05 YlbE 3 lkrflRenpyWYrkLnRnpeelkeleke 30 l+ + + n+ W++ Ln +p+ +k+le++ T239486_3 861 LTPYTKVNSRWFKDLNVRPKTIKTLEEN 888 677999*******************985 PP == domain 3 score: 4.9 bits; conditional E-value: 0.0062 YlbE 23 elkelekemkekYkktipdkvekisnsl 50 ++ + +e k+ Ykk+++++++k ++ + T239486_3 957 LISRIYNELKQIYKKKTNNHIKKWAKDM 984 5778889***************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1092 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 614 (0.0376549); expected 326.1 (0.02) Passed bias filter: 268 (0.0164357); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.68 # Mc/sec: 4594.16 // Query: T330805_1 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.017 13.0 147.5 0.058 11.3 27.3 4.4 4 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein Domain annotation for each model (and alignments): >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 50.3 0.00054 8.8 509 601 .. 977 1069 .. 948 1085 .. 0.40 2 ? 0.0 46.0 0.0087 1.4e+02 508 604 .. 1046 1142 .. 1041 1163 .. 0.84 3 ? 3.9 23.3 0.0006 9.7 509 583 .. 1166 1240 .. 1161 1249 .. 0.93 4 ? 11.3 27.3 3.5e-06 0.058 510 600 .. 1565 1655 .. 1558 1678 .. 0.53 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.00054 Herpes_BLLF1 509 ptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatsptvgetspq 601 ptsa pt + pt a pt + pt ptsa t pt +t pt a pt + ipt ptsa t pt +t pt t p T330805_1 977 PTSASLIPTSASILPTSASIIPTSASLIPTSASIIPTSASTIPTSASTIPTSASIIPTSASIIPTSASIIPTSASTIPTSASTIPTSASTIPT 1069 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333222 PP == domain 2 score: 0.0 bits; conditional E-value: 0.0087 Herpes_BLLF1 508 sptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatsptvgetspqa 602 ptsa t pt +t pt a t pt + pt ptsa pt + pt a +pt + i t sptsa pt + pt p + T330805_1 1046 IPTSASTIPTSASTIPTSASTIPTSPSLIPTSPYLIPTSASIIPTSASLIPTSASISPTSASIITTSASISPTSASIIPTSASIIPTSASIIPTS 1140 59***********************9999**999**********************************************999988877766654 PP Herpes_BLLF1 603 nt 604 + T330805_1 1141 AS 1142 33 PP == domain 3 score: 3.9 bits; conditional E-value: 0.0006 Herpes_BLLF1 509 ptsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsav 583 p+sa p+ + pt a pt + pt ptsa +pt + spt a p + ipt sptsa T330805_1 1166 PASASLIPASASIIPTSASIIPTSASLIPTSPSLIPTSASLSPTSASISPTSASLKPVSASLIPTSASISPTSAS 1240 8999999******************************************************************95 PP == domain 4 score: 11.3 bits; conditional E-value: 3.5e-06 Herpes_BLLF1 510 tsavttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsavttptpnatsptvgetsp 600 ts+ pt + pt a pt + pt ptsa pt + pt a pt + ipt ptsa pt + pt p T330805_1 1565 TSSSLNPTSASIIPTSASLIPTSASIIPTSASIIPTSASIIPTSTSIIPTSASIIPTSASIIPTSASIIPTSASIVPTSASIVPTSAFIIP 1655 5555555555555555555555555555555555555555555555555555555555555555555555555555555555444433333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.69 # Mc/sec: 11352.11 // Query: T330805_2 [L=2738] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2738 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.79 # Mc/sec: 9915.13 // Query: T330805_3 [L=2737] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2737 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 42 (0.00257574); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.36s 00:00:01.52 Elapsed: 00:00:00.66 # Mc/sec: 11863.78 // Query: T085586_1 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00058 19.5 0.1 0.00095 18.8 0.1 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.1 5.8e-08 0.00095 130 165 .. 518 553 .. 495 556 .. 0.91 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 5.8e-08 HERV-K_env_2 130 eecvansavilqnnefgtiidwaprgqfyhncsgqt 165 e+c a+ a +l+n+ +g ii+w+p+g f c+ q+ T085586_1 518 EDCFAEQAEVLHNDSYGIIINWSPKGMFSLICTSQS 553 79******************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.62 # Mc/sec: 6413.80 // Query: T085586_2 [L=1390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-21 77.2 0.0 1.7e-21 76.5 0.0 1.3 1 rve Integrase core domain 1.4e-06 27.4 1.0 2.5e-06 26.6 1.0 1.4 1 IN_DBD_C Integrase DNA binding domain 5.2e-06 26.2 0.4 1.1e-05 25.1 0.4 1.6 1 Integrase_Zn Integrase Zinc binding domain ------ inclusion threshold ------ 0.05 13.7 0.0 0.077 13.1 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.5 0.0 4.2e-25 1.7e-21 3 118 .. 162 272 .. 161 273 .. 0.95 Alignments for each domain: == domain 1 score: 76.5 bits; conditional E-value: 4.2e-25 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrp 102 +p++lwq+Dvt+++ + g+ ay++v +d+fs++++a + s e ++ v + l + +a g p +Dn++ yt +a+++f + ++ ++ + p+++ T085586_2 162 EPNSLWQMDVTHVP--SFGRLAYVHVCVDTFSHFVWATYQSGE-SSACVKRHLLQCFAVMGI--PASSKTDNAPGYTGQALATFFSMWNSKHITGIPYNS 256 69************..56777**********************.888888888889*****9..9*********************************** PP rve 103 qdnGkvErfnrtlkde 118 q++++vEr+n lk++ T085586_2 257 QEQAIVERMNLSLKQQ 272 *************997 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 1.0 6.1e-10 2.5e-06 6 49 .. 329 371 .. 324 372 .. 0.91 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 6.1e-10 EE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEEE CS IN_DBD_C 6 kwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvrk 49 w+dl +++W +++++grG++ + P ++++++w+P R +++ T085586_2 329 WWRDLITKSWEI-GKIITWGRGYAYISPGQNQQPIWIPSRHLKP 371 6*********84.69*************************9996 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 0.4 2.8e-09 1.1e-05 19 37 .. 127 145 .. 127 146 .. 0.95 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 2.8e-09 Integrase_Zn 19 FkitreqAreIVqsCptCq 37 ++it+++A++I+q+CptCq T085586_2 127 YSITWKEAKAIIQQCPTCQ 145 79****************8 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 1.9e-05 0.077 2 115 .. 165 278 .. 164 288 .. 0.83 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 1.9e-05 DDE_Tnp_IS240 2 kswrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasaya.salkelkregelfdevshvqvk.yl 95 + w++D T v G+ aY+ vD + + + + + +k+ l +++ + p++ tD a+ y +al++++ + +++ + + T085586_2 165 SLWQMDVTHVPSFGRLAYVHVCVDTFSHFVWATYQSGESSACVKRHLLQCFAVM-GIPASSKTDNAPGYTgQALATFFSMWN-SKHITGIPYNsQE 258 57**************************988888888889999***********.**************6589999999433.3333333333256 PP DDE_Tnp_IS240 96 nnriEsdhrtlKkrlrptrg 115 + ++E+ + lK++l++++g T085586_2 259 QAIVERMNLSLKQQLQKQKG 278 7789**********999887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1390 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.71 # Mc/sec: 5600.78 // Query: T085586_3 [L=1389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00072 19.4 0.6 0.0013 18.6 0.6 1.3 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.6 8.1e-08 0.0013 23 73 .. 407 457 .. 393 468 .. 0.83 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 8.1e-08 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalv 73 t++++ppt q+kkl+q+a l + t t + +++a + +++ + + T085586_3 407 NTRRTQPPTCGQIKKLSQMAEENLRKAGQTVTMNNLIVAMIAVITTAMSNP 457 6999*********************99999999999999777766555544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1389 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.56 # Mc/sec: 7095.88 // Query: T281978_1 [L=3807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.42 9.2 87.6 0.61 8.6 87.6 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 87.6 3.7e-05 0.61 94 239 .. 1916 2059 .. 1908 2096 .. 0.60 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 3.7e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX CS MIP-T3 94 ktkrkkeeknksgkeeesrkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkk.kdsknk 190 +++r+ ++k++ ++eee rke++ke +k +e+e++ + rk++ ++++++++++ke++ke+kk+ke++r ++k++e+ k + r++k+k+ k++k+k T281978_1 1916 DKARSSQKKKRRKEEEEGRKEGRKEGRKGGRERERK-RERRKKERKKERRKKERKKERKKERKKGKERERRENKREEQRKRERRKEKKKEGrKGRKKK 2012 567788888888889999999999999988888888.3333344444555566677777777777777666665555555555544444432444555 PP XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 191 kkdk.ekekkkekssksesgkeeerskdeerekeadkgkdretnrateee 239 +++k eke++kek++++ +++++er+k++++e++++k+k +++ ++e+e T281978_1 2013 ERKKkEKEEEKEKEERKRKKEKKERKKERKKERKKKKEK--KER-KKEKE 2059 554445555555554444444444444444444443333..333.22332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1906 (0.116889); expected 326.1 (0.02) Passed bias filter: 557 (0.0341592); expected 326.1 (0.02) Passed Vit filter: 405 (0.0248375); expected 16.3 (0.001) Passed Fwd filter: 65 (0.00398626); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.51u 0.42s 00:00:03.93 Elapsed: 00:00:00.79 # Mc/sec: 13786.30 // Query: T281978_2 [L=3806] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3806 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1896 (0.116276); expected 326.1 (0.02) Passed bias filter: 557 (0.0341592); expected 326.1 (0.02) Passed Vit filter: 423 (0.0259414); expected 16.3 (0.001) Passed Fwd filter: 86 (0.00527413); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.06u 0.44s 00:00:04.50 Elapsed: 00:00:00.82 # Mc/sec: 13278.44 // Query: T281978_3 [L=3806] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3806 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1829 (0.112167); expected 326.1 (0.02) Passed bias filter: 551 (0.0337912); expected 326.1 (0.02) Passed Vit filter: 395 (0.0242242); expected 16.3 (0.001) Passed Fwd filter: 85 (0.00521281); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.77u 0.40s 00:00:04.17 Elapsed: 00:00:00.81 # Mc/sec: 13442.37 // Query: T128228_1 [L=1317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.48 # Mc/sec: 7849.40 // Query: T128228_2 [L=1316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-15 56.6 2.4 5.2e-15 55.7 2.4 1.4 1 GP41 Retroviral envelope protein 3.7e-07 30.0 2.8 7.3e-07 29.0 2.8 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.16 10.0 2.5 0.12 10.4 0.2 1.7 2 Fusion_gly Fusion glycoprotein F0 Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.7 2.4 9.6e-19 5.2e-15 2 173 .. 584 751 .. 583 779 .. 0.87 Alignments for each domain: == domain 1 score: 55.7 bits; conditional E-value: 9.6e-19 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX..XX...HHHHHHHHHHXH CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynasesW.ervkkhlegiWnnt 100 a v+l ++q+a +v++ +kn k + Q +i +kl +++n l + v+ +G+ ++sl+++++ +C n C T+ yna e e ++ hl+g ++ T128228_2 584 AGVALHSSIQTAGFVDSWQKNSSKLWNSQSQIGQKLANQINDLCQTVIWMGDWIMSLEHRIQKQCDWNTSDFCFTPSSYNAIEHQ*ETIRRHLQG--KKD 681 5689******************************************************************************999999******9..677 PP HHHHHHHHHHHHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHX CS GP41 101 evsldlsklhneiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllll 173 ++ ld++kl++++ ++++++ l+ +d l + l n + l+W++ i + ia + + v l +l l+ T128228_2 682 NLTLDIAKLKKQVFEASQAHLTLLPGADILAGASDGLSNTNP-LKWIETI--GGSTIANFILVCVCLCCLFLV 751 899******************************988776655.59*9964..334444444444555555444 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 2.8 1.3e-10 7.3e-07 3 67 .. 126 190 .. 124 192 .. 0.85 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 1.3e-10 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivs 67 ap h+m +m s eqm t++a p tw q+k l+ +a l t +++a ++++s T128228_2 126 APPVHQMAQMNISVEQMETSKTRQATPLTWGQVKSLAHIAEENLRSLNKLLTTSNLMVAMMVVIS 190 7999****************************************988777666555555555555 PP >> Fusion_gly Fusion glycoprotein F0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.1 0.097 5.3e+02 455 479 .. 165 189 .. 138 191 .. 0.86 2 ? 10.4 0.2 2.3e-05 0.12 82 125 .. 557 601 .. 542 647 .. 0.76 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.097 HHHHHTCCCHHHHHTTXXXXXXXXX CS Fusion_gly 455 snkiLdsvnkkllstaivivlivlv 479 +++ L+s nk l++++ +++++v++ T128228_2 165 AEENLRSLNKLLTTSNLMVAMMVVI 189 6788***************999985 PP == domain 2 score: 10.4 bits; conditional E-value: 2.3e-05 SSSSXCCCXXEEEHHHHXEE.EHHHHHHHHHHHHHHHHHHHHHCC CS Fusion_gly 82 skrkkrflGvvlgaiAlgvA.taAqitAgiAlakalknaeeiakl 125 +r krf+ ++++i +A ta + +Ag+Al+ +++ a+ +++ T128228_2 557 LNRSKRFIFTLIAVIMGLIAvTATAAAAGVALHSSIQTAGFVDSW 601 568889987777765433442677789***********9988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 497 (0.0304796); expected 326.1 (0.02) Passed bias filter: 301 (0.0184595); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 6971.95 // Query: T128228_3 [L=1316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-45 153.7 0.4 5.7e-45 153.0 0.4 1.2 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 153.0 0.4 3.5e-49 5.7e-45 12 166 .. 224 382 .. 219 384 .. 0.91 Alignments for each domain: == domain 1 score: 153.0 bits; conditional E-value: 3.5e-49 HERV-K_env_2 12 yvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvnylqd...fsyqrs 103 +vnds+w+pgpid+r p++peeegm++n+sigy++p iclg a gcl q w+ vp s+ h +sg +++ ++yl+ +++++ T128228_3 224 HVNDSIWMPGPIDNRGPTHPEEEGMLMNVSIGYHFPSICLGPAAGCLNYDKQSWMTCVPAN-NGSKAPIHAISGRTFQSldTIKYLEHgyvMTHRQI 319 79*********************************************************86.5689999*****98875337899975332456667 PP HERV-K_env_2 104 lkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtq 166 k++p+ kpcp++ k s + evl we+c+ans+ +lq n +g +idwap g+f nc+gq + T128228_3 320 NKYKPNKKPCPRKATKWSGKLEVLTWEDCIANSTAVLQSNSYGIVIDWAPMGRFAVNCTGQCE 382 79**********************************************************975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.51 # Mc/sec: 7382.06 // Query: T348019_1 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5581.54 // Query: T348019_2 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5362.65 // Query: T348019_3 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.49 # Mc/sec: 5581.54 // Query: T137597_1 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.26s 00:00:01.21 Elapsed: 00:00:00.52 # Mc/sec: 16603.82 // Query: T137597_2 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 403 (0.0247148); expected 326.1 (0.02) Passed bias filter: 182 (0.0111615); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.26s 00:00:01.31 Elapsed: 00:00:00.53 # Mc/sec: 16290.54 // Query: T137597_3 [L=3018] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3018 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.23s 00:00:01.15 Elapsed: 00:00:00.48 # Mc/sec: 17987.47 // Query: T052741_1 [L=3402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 39 (0.00239176); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.54 # Mc/sec: 18023.23 // Query: T052741_2 [L=3402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.23s 00:00:01.24 Elapsed: 00:00:00.49 # Mc/sec: 19862.33 // Query: T052741_3 [L=3402] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3402 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.51 # Mc/sec: 19083.42 // Query: T188382_1 [L=4483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.28s 00:00:01.47 Elapsed: 00:00:00.56 # Mc/sec: 22901.97 // Query: T188382_2 [L=4482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.57 # Mc/sec: 22107.31 // Query: T188382_3 [L=4482] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4482 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.61 # Mc/sec: 21020.07 // Query: T191678_1 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 7712.32 // Query: T191678_2 [L=1294] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1294 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.46 # Mc/sec: 8047.64 // Query: T191678_3 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.49 # Mc/sec: 7549.09 // Query: T228902_1 [L=178] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (178 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 450 (0.0275972); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1039.24 // Query: T228902_2 [L=177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.49 # Mc/sec: 1033.40 // Query: T228902_3 [L=177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 93 (0.00570342); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.48 # Mc/sec: 1054.93 // Query: T374602_1 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-15 56.8 0.0 3.1e-15 56.2 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 2.4e-11 43.7 0.0 4.2e-11 43.0 0.0 1.3 1 rve Integrase core domain 4.5e-09 35.9 0.1 8.4e-09 35.1 0.1 1.4 1 Gag_MA Matrix protein (MA), p15 1.7e-06 28.1 0.2 4.3e-06 26.8 0.2 1.8 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.00011 22.3 0.0 0.00018 21.6 0.0 1.2 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 0.0 9.6e-19 3.1e-15 67 206 .. 1299 1419 .. 1277 1430 .. 0.90 Alignments for each domain: == domain 1 score: 56.2 bits; conditional E-value: 9.6e-19 S--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS RVT_1 67 kaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtll 164 + +++ lDlk+aF+s++l+ +++kl+af+ ++ +s + +++y++++lpqG+++SP++f ++ + l+++ +r g +ll T374602_1 1299 EDSWFTCLDLKNAFFSIRLSPESQKLFAFQWEDL-----ES--------------AVTTQYTWTRLPQGFKNSPTIFREALARDLQKIPTRDLGFVLL 1377 678*****************************44.....33..............449**************************************** PP ECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE CS RVT_1 165 rYaDDililskskeelqelleaveewlkesglkinpeKtklv 206 +Y+D +l+ + + + ++++ +l+++++k++++ +++ T374602_1 1378 QYVDNFLLGHPMAVMCAKGMDTLLWHLEDYRYKVSKKEAQIC 1419 **********************************99877766 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 0.0 1.3e-14 4.2e-11 3 86 .. 2180 2259 .. 2178 2265 .. 0.92 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 1.3e-14 rve 3 rpgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafref 86 +p e +qvD+t+++ + gg++yllv + ++s+++ a+++++e +a +v+++l r + ++g p+ + sDng+++++ +++ T374602_1 2180 APFEDLQVDFTKMP--KCGGNKYLLVLVCTYSGWVEAYPTRTE-KAREVTHVLLRDLIPRFGL-PLQISSDNGPAFVADLLQKT 2259 689999********..9999***********************.******************9.*************8766655 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.1 0.1 2.6e-12 8.4e-09 43 102 .. 553 610 .. 553 625 .. 0.88 Alignments for each domain: == domain 1 score: 35.1 bits; conditional E-value: 2.6e-12 GGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXXX CS Gag_MA 43 ptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflps 102 p+l+vgWP eG d + ++kv +kv Gk pD pYi tW +Lv dP +w++ ++ T374602_1 553 PALEVGWPSEGGLDRSFVSKVWHKVT--GKPENPDHFPYIDTWLQLVLDPLQWLRGQAAA 610 689**********************9..8899**********************976555 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.2 1.3e-09 4.3e-06 1 37 [. 2122 2158 .. 2122 2158 .. 0.98 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 1.3e-09 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCka 37 H++tHlG++ l++ll ++++l++++++++V+++C++ T374602_1 2122 HETTHLGQESLEKLLGWYFYILHLSALAKTVAQQCVT 2158 9**********************************86 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.0 5.6e-08 0.00018 34 117 .. 1947 2029 .. 1920 2032 .. 0.79 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 5.6e-08 EEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTT.HHHHHHHHHCHCSSEEE CS RNase_H 34 sapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvkn.kelaellkelakkkkvq 117 +++l++ +++ ++ L+A+i a + + ++++vniytDS Y++ +++ + k++a ++ k++k +e+ +ll+++ k++kv T374602_1 1947 AKSLPQGTSARKTKLIALILAFElS--EGKTVNIYTDSWYAFLTLQLRGAFYKEKAL-LNAGRKDIKYqQEILQLLEAVWKPQKVA 2029 5778899***************955..9***************66554444444444.5666778998799999999999988875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.55 # Mc/sec: 17721.54 // Query: T374602_2 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.54 # Mc/sec: 18049.72 // Query: T374602_3 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-52 176.8 0.9 5.1e-52 176.3 0.9 1.2 1 Gag_p30 Gag P30 core shell protein 2.2e-13 50.2 0.0 3.8e-13 49.4 0.0 1.4 1 RVP Retroviral aspartyl protease ------ inclusion threshold ------ 0.042 14.4 0.0 0.077 13.5 0.0 1.4 1 Asp_protease_2 Aspartyl protease 0.05 14.0 0.0 0.092 13.2 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease 0.16 12.0 0.0 0.27 11.3 0.0 1.2 1 Methyltransf_6 Demethylmenaquinone methyltransferase Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 176.3 0.9 1.6e-55 5.1e-52 2 210 .. 732 941 .. 731 942 .. 0.93 Alignments for each domain: == domain 1 score: 176.3 bits; conditional E-value: 1.6e-55 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknvpgedgrptqlpn.evdeafpltrpdwdyetae 100 y p ++++l nwk+n ps++e+pq++ l+++i+ th+ptw dc qll l+ t+er+rvl a k ++ + + p+ v + +p t p+wd + + T374602_3 732 YQPSTSANLLNWKNNTPSYTEKPQAIIDLLQTIIQTHNPTWADCHQLLMCLFNTDERRRVLQAATKWLEEHVPADYKNPQeYVMAQLPGTDPQWDPNERQ 831 88999************************************************************9886654444444331577889************* PP Gag_p30 101 greslkly.rqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlv 199 g ++l+ + r++ll gl+ a++ tn+ k+ ev+qgkeespa f erl eay +ytp+dp++pe++ + ++++ qsa dir+kl++ g+ +++ ++l+ T374602_3 832 GMQRLN-W*REALLEGLKKGAQKATNINKISEVIQGKEESPAQFYERLCEAYCMYTPFDPNNPENQRMINMALVSQSAEDIRRKLHKQAGFAGMNTSQLL 930 *99554.699****************************************************************************************** PP Gag_p30 200 keaekvynkre 210 a++v+ r+ T374602_3 931 EIANQVFVNRD 941 *******9876 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.4 0.0 1.2e-16 3.8e-13 3 100 .. 1049 1141 .. 1047 1142 .. 0.95 Alignments for each domain: == domain 1 score: 49.4 bits; conditional E-value: 1.2e-16 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 ++P++++ +ggk ie+l+DtGA++ v++ P + kk+ ++ g ++++ + ++ +++ + ++l +p++p++llGrdlL+kl +++ T374602_3 1049 KEPMVRMTVGGKDIEFLVDTGAEHPVVTTLVAPLS---KKTIDIIRTTGVSAKQAFCLPWTCTVGGHEVIH--QFLYMPDCPLPLLGRDLLSKLRATI 1141 68*********************************...88888999999999*******************..*********************9987 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 2.4e-05 0.077 1 28 [. 1053 1080 .. 1053 1130 .. 0.84 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.4e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispela 28 v+ t++Gk+++fl+DTGa + ++++ +a T374602_3 1053 VRMTVGGKDIEFLVDTGAEHPVVTTLVA 1080 6789***************999986555 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 2.8e-05 0.092 1 28 [. 1053 1080 .. 1053 1135 .. 0.85 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 2.8e-05 EEEEETTEEEEEEEETT-SS-EEEHHHH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiiseela 28 v +t+ gk+++flvDTGA++ ++++ +a T374602_3 1053 VRMTVGGKDIEFLVDTGAEHPVVTTLVA 1080 5789****************99998776 PP >> Methyltransf_6 Demethylmenaquinone methyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 8.4e-05 0.27 25 106 .. 2882 2958 .. 2865 2961 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 8.4e-05 EEEEEEEEEESS-BGHHHHHHHTS--TTEEEEEESTTSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEE CS Methyltransf_6 25 fvGpavTvkvveadnslvkealeeagpgdvlVvdgggslraallGgllataakargvaGvvvdGavRDvdelreldfpvfal 106 G+a+T+ + + ++++ +++ ++ + d l+ gg ++ + +l++ + +r+ +G vv+ vRD+++l+ ++++v+ + T374602_3 2882 ETGRALTLLAQQ-ETQMRNAIYQNRLALDYLLAAEGGV-CEKF---NLTKCCLQRDDQGQVVKNIVRDMTKLAHVPMQVWHR 2958 469******977.5555555556667788888877774.5666...79*******************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 238 (0.0145959); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.13u 0.31s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 17405.09 // Query: T157124_1 [L=1012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.49 # Mc/sec: 5908.49 // Query: T157124_2 [L=1012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.51 # Mc/sec: 5676.78 // Query: T157124_3 [L=1012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 5567.62 // Query: T188443_1 [L=5567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 793 (0.0486324); expected 326.1 (0.02) Passed bias filter: 333 (0.0204219); expected 326.1 (0.02) Passed Vit filter: 54 (0.00331166); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.88u 0.35s 00:00:02.23 Elapsed: 00:00:00.69 # Mc/sec: 23081.51 // Query: T188443_2 [L=5567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 386 (0.0236723); expected 326.1 (0.02) Passed bias filter: 172 (0.0105483); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.39s 00:00:02.33 Elapsed: 00:00:00.82 # Mc/sec: 19422.24 // Query: T188443_3 [L=5567] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 6.1 6.8 5.6 11 6.0 5.6 1.3 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 5.6 0.00067 11 66 103 .. 2367 2404 .. 2364 2425 .. 0.62 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00067 Peptidase_S49_N 66 elkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 ++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188443_3 2367 RQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2404 45555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5567 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 810 (0.049675); expected 326.1 (0.02) Passed bias filter: 410 (0.0251441); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.74u 0.51s 00:00:03.25 Elapsed: 00:00:00.95 # Mc/sec: 16764.46 // Query: T364283_1 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.3 9.6 11.8 0.41 9.2 11.8 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 9.4 6.2 18.9 11 5.9 17.9 1.7 1 Auts2 Autism susceptibility gene 2 protein Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 11.8 5e-05 0.41 132 205 .. 157 246 .. 132 256 .. 0.50 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 5e-05 XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXX.XXXXXXXXXXX CS MIP-T3 132 kerkqkeelkekrrpkekeke....kekkkkkekdrekekererekaserekkekkk.............kdsknkkkdk.ekekkkekssk 205 +++ ++++l+++++++ + + + ++++ e++re+e+erere+++er+k +k+ +k ++ e+++++++s + T364283_1 157 HQQHRHQQLQQPPPDTSRPRIptsgRGRERERERERERERERERERERERAKYLRKRgaanphgfaigrgT--GRQKGERkERDRERKRSTR 246 44455555555555544444311003333333333333333333344444344443366778888888542..3333333344444443333 PP >> Auts2 Autism susceptibility gene 2 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 17.9 0.0014 11 83 211 .. 95 246 .. 75 253 .. 0.65 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0014 Auts2 83 psphhssfl.tpaahldpfsrsstfggLgalssnaFgGLgsptltassvfgpkegpalqglssp.hdpwnrLhrtpp..sFPtppsWpkpadaersssla 178 ++ s fl +++ + fs + t L n +G +s + ++++ +++ p+++ ls + + ++L++ pp s P p+ ++ + er+ T364283_1 95 APAFLSPFLrGEPSVCNGFSSPETVVLLHQTLLNLQPGDSS-SAAPEPAPPTRPVPPAPRLSVHqQHRHQQLQQPPPdtSRPRIPTSGRGRERERER-ER 192 44444556643444447777777777766655566666555.5567777888888999999777356788999999755677777777888877777.33 PP Auts2 179 erererdrererekrd.....................ssvskdekdRdslekeR 211 ererer+rerere+ + ++ +++e+dR++ + +R T364283_1 193 ERERERERERERERAKylrkrgaanphgfaigrgtgrQKGERKERDRERKRSTR 246 445555555555554499999999999999998866555556666666544444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 829 (0.0508402); expected 326.1 (0.02) Passed bias filter: 377 (0.0231203); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 1448.30 // Query: T364283_2 [L=324] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.78 9.6 13.6 1.5 8.7 13.6 1.4 1 DUF3915 Protein of unknown function (DUF3915) Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 13.6 9.4e-05 1.5 22 43 .. 185 206 .. 177 209 .. 0.48 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 9.4e-05 DUF3915 22 rdrerererederekerekkke 43 r+rererere+ere+ere+++e T364283_2 185 RERERERERERERERERERERE 206 4444444444444444444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (324 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 496 (0.0304183); expected 326.1 (0.02) Passed bias filter: 243 (0.0149025); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.61 # Mc/sec: 1519.52 // Query: T364283_3 [L=323] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 10.3 6.6 0.27 9.8 6.6 1.2 1 MIP-T3 Microtubule-binding protein MIP-T3 Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 6.6 1.7e-05 0.27 154 215 .. 181 242 .. 149 261 .. 0.54 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 1.7e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 154 ekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgkeeers 215 e++++ e++re+e+erere+++ere + +++++ ++++ ++ ++++++ +e++++++++ T364283_3 181 ERERERERERERERERERERERERESQIPEEEGGCQSARLCHRAGDRQTEGGKEGEGQRKKE 242 44444444444444444444444444444443333333333333344444333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (323 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 737 (0.0451981); expected 326.1 (0.02) Passed bias filter: 359 (0.0220164); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 1400.07 // Query: T369026_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3538.17 // Query: T369026_2 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 147 (0.00901509); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.68 # Mc/sec: 3538.17 // Query: T369026_3 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.57 # Mc/sec: 4143.27 // Query: T357988_1 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 965 (0.0591807); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.69 # Mc/sec: 4606.35 // Query: T357988_2 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1149 (0.0704649); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.65 # Mc/sec: 4885.42 // Query: T357988_3 [L=1110] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1110 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1022 (0.0626763); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 4739.58 // Query: T001154_1 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.70 # Mc/sec: 5451.92 // Query: T001154_2 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 5530.94 // Query: T001154_3 [L=1334] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1334 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.67 # Mc/sec: 5696.04 // Query: T079587_1 [L=2313] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2313 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.67 # Mc/sec: 9876.27 // Query: T079587_2 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.62 # Mc/sec: 10668.13 // Query: T079587_3 [L=2312] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 5.2 7.0 6.1 11 6.0 6.1 1.4 1 DUF982 Protein of unknown function (DUF982) Domain annotation for each model (and alignments): >> DUF982 Protein of unknown function (DUF982) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 6.1 0.00068 11 34 69 .. 1389 1424 .. 1385 1426 .. 0.92 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.00068 -SHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHH CS DUF982 34 rgeayeaAlkaCrdAldgdvpveeAReaFiaAaeea 69 +g+a +A++aC ++++++++ +A+ ++ aAa +a T079587_3 1389 HGPAAAEACRACSLSHADRRAPRAACSTLWAAAPRA 1424 79******************************9776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2312 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.71 # Mc/sec: 9315.83 // Query: T370857_1 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.67 # Mc/sec: 4991.51 // Query: T370857_2 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.7e-07 27.7 0.4 4.3e-06 25.6 0.4 1.8 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.6 0.4 2.6e-10 4.3e-06 305 561 .] 720 980 .. 701 980 .. 0.73 Alignments for each domain: == domain 1 score: 25.6 bits; conditional E-value: 2.6e-10 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX...XXXXXX CS TLV_coat 305 gqglligkvPkthqalcnktektskgseylvapngtvfacntgltpclstallnlttdlCvlaellPdislisge..yiyaidepatRvkRepvaltlal 402 q+ ++k Pk + ++ + + +ap+g +++ ++ +t+l+++++++Cv ++ P + + + + + a+ kR +a+ T370857_2 720 TQSTPFSKFPKLQTVWTH-----PESHRDWTAPTGLYWIYGHR----AYTKLPDQWAGSCVIDTIKPSFFPLPIKtgELLGFPVYASHEKR-SIAV--GN 807 445556666666666666.....333446889******97754....47******************998777776757777777788888.3333..22 PP XXXXX..........XXXXXXXXXXXXX.XX...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S------ CS TLV_coat 403 lLgGL..........giaagvgtGttgl.vs...tqqfkkLqaalekDvqaleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFya 487 g a+ ++ G g + ++q+ +Lqa le ++ +++ l ++ t++ + + QNR D L + eGG+C + +CC + T370857_2 808 WKDDEwptqriihyyGPATWTQDGSWGYwIPiymINQIIRLQAVLEIITNKTVRALTILARQETQMRNSIYQNRLAFDYLLAAEGGICGKFNlSNCCLHI 907 221111222233555999999****999877778999***************************************************9998568***** PP --HH.....HHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 488 dksg.....ivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLllGPcilnrLvqlik 561 d g ivrd + kL + q ++ + f ++ + + t++ +g+++++ Ll Pc+l L+q+ik T370857_2 908 DYQGqvvedIVRD-MTKLAHVPMQVWHGFDPGAM-FGKWFPVLGGFKTVI---IGVIIVIGTCLL-LPCLLTVLLQMIK 980 *876422224444.67777777777777776666.788888888888888...666665555444.4*********997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.56 # Mc/sec: 5971.98 // Query: T370857_3 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 136 (0.00834049); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.57 # Mc/sec: 5766.05 // Query: T376349_1 [L=5124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.35s 00:00:02.06 Elapsed: 00:00:00.90 # Mc/sec: 16287.66 // Query: T376349_2 [L=5124] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5124 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.42s 00:00:02.23 Elapsed: 00:00:00.80 # Mc/sec: 18323.62 // Query: T376349_3 [L=5123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.34s 00:00:01.86 Elapsed: 00:00:00.76 # Mc/sec: 19284.25 // Query: T121809_1 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 345 (0.0211579); expected 326.1 (0.02) Passed bias filter: 193 (0.0118361); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 3287.45 // Query: T121809_2 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 288 (0.0176622); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 3123.07 // Query: T121809_3 [L=655] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (655 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 317 (0.0194407); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.67 # Mc/sec: 2796.78 // Query: T089882_1 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 570 (0.0349565); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.72 # Mc/sec: 4732.29 // Query: T089882_2 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.66 9.5 3.5 30 4.3 0.2 4.2 3 DUF4444 Domain of unknown function (DUF4444) Domain annotation for each model (and alignments): >> DUF4444 Domain of unknown function (DUF4444) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 0.2 0.0018 30 24 36 .. 201 213 .. 200 225 .. 0.93 2 ? -1.4 0.0 0.11 1.8e+03 23 35 .. 224 236 .. 220 239 .. 0.88 3 ? 2.8 0.1 0.0051 82 24 36 .. 418 430 .. 417 432 .. 0.93 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.0018 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_2 201 ILQSRKRTHMIPI 213 7999********8 PP == domain 2 score: -1.4 bits; conditional E-value: 0.11 EEEE-SS-EEEE- CS DUF4444 23 mllrdetdTrlIP 35 ++l++ T++I T089882_2 224 LILQSRKRTHVIN 236 799*******995 PP == domain 3 score: 2.8 bits; conditional E-value: 0.0051 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_2 418 ILQSRKQTHVIPI 430 79**********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1602 (0.098246); expected 326.1 (0.02) Passed bias filter: 323 (0.0198087); expected 326.1 (0.02) Passed Vit filter: 213 (0.0130627); expected 16.3 (0.001) Passed Fwd filter: 94 (0.00576475); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.68u 0.59s 00:00:04.27 Elapsed: 00:00:01.15 # Mc/sec: 2937.28 // Query: T089882_3 [L=1191] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-10 41.7 0.0 0.094 13.2 0.0 3.6 4 MgtE_N MgtE intracellular N domain ------ inclusion threshold ------ 0.6 9.7 49.0 7.2 6.2 0.1 14.7 19 DUF4444 Domain of unknown function (DUF4444) Domain annotation for each model (and alignments): >> MgtE_N MgtE intracellular N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.0 5.8e-05 0.47 18 97 .. 2 81 .. 1 86 [. 0.80 2 ! 13.2 0.0 1.2e-05 0.094 10 89 .. 102 181 .. 81 186 .. 0.73 3 ! 11.5 0.0 3.9e-05 0.31 13 97 .. 262 346 .. 253 351 .. 0.81 4 ! 10.5 0.0 8.2e-05 0.67 4 87 .. 289 372 .. 286 377 .. 0.81 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 5.8e-05 HHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHHHHHHHCCC CS MgtE_N 18 raallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereeieell 97 r +++ l + ++ v+ l+++ + +i l++++ ++++ l+s +++ +++ l +k+ ++++ l++ +r+++ +l T089882_3 2 RTHVIPILQSRKRTHVIPILQSRKQTHVIPILQSRKQTRMIFILQSRKRTHVIHILQSRKRTHVIPILQSRKRTHVIPIL 81 56677778888888888888888888888888888888888888888888888888888888888888888888876555 PP == domain 2 score: 13.2 bits; conditional E-value: 1.2e-05 CCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHH CS MgtE_N 10 leelpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeee 89 + l++++r +++ l + ++ v+ l+++ r ++i+ l++++ ++++ l+s +++ ++ l +k+ +++ l++ + T089882_3 102 IPILQSRKRTHVIPILQSRKRTHVIPILQSRKRTRVIHILQSRKWTRVIHILQSRKRTHMIFILQSRKRTRVIHILQSRR 181 44466677777777777788888888888888888888888888888888888888877777777777777777776655 PP == domain 3 score: 11.5 bits; conditional E-value: 3.9e-05 S-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-HHHHHHHHCCC CS MgtE_N 13 lpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereeieell 97 l+++++ +++ l + ++ +v+ l+++ r+ +i l++++ ++++ l+s +++ ++ l +k+ ++++ l++ +r+++ +l T089882_3 262 LQSRKQTRMIPILQSRKRTDVIPILQSRKRAHVIPILQSRKQTRMIPILQSRKRTHVIPILQSRKRTHMIPILQSRKRTHMILIL 346 5667777888888888888899999999999999999999999999999999999999999888888888888888888876665 PP == domain 4 score: 10.5 bits; conditional E-value: 8.2e-05 HHHHHCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHHHHHHHCS-H CS MgtE_N 4 adiaelleelpeeeraallrllpkeeaaevleeldedlreeliealsdeelaelleeldsDdaadlleelpeekveellsalde 87 + a+++ l+++++ +++ l + ++ v+ l+++ r +i l++++ ++++ l+s +++d++ l +k++++++ l++ T089882_3 289 RKRAHVIPILQSRKQTRMIPILQSRKRTHVIPILQSRKRTHMIPILQSRKRTHMILILQSRKRTDVIPILQSRKRAHVIPILQS 372 556777778888888888999999999999999999999999999999999999999999999999999999999888877765 PP >> DUF4444 Domain of unknown function (DUF4444) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.1 0.017 1.4e+02 24 36 .. 8 20 .. 6 22 .. 0.93 2 ? 3.0 0.1 0.0088 72 24 36 .. 20 32 .. 19 35 .. 0.93 3 ? -1.2 0.0 0.18 1.5e+03 24 34 .. 32 42 .. 31 49 .. 0.91 4 ? 2.2 0.0 0.016 1.3e+02 24 36 .. 56 68 .. 55 70 .. 0.92 5 ? 2.1 0.1 0.017 1.4e+02 24 36 .. 68 80 .. 67 83 .. 0.92 6 ? -1.4 0.0 0.22 1.8e+03 24 34 .. 80 90 .. 79 92 .. 0.91 7 ? 2.3 0.1 0.015 1.2e+02 24 36 .. 92 104 .. 89 107 .. 0.91 8 ? 2.0 0.1 0.019 1.6e+02 24 36 .. 104 116 .. 104 118 .. 0.92 9 ? 2.0 0.1 0.018 1.5e+02 24 36 .. 116 128 .. 115 130 .. 0.92 10 ? -1.2 0.1 0.18 1.5e+03 24 34 .. 152 162 .. 151 175 .. 0.80 11 ? 6.2 0.1 0.00088 7.2 23 36 .. 260 273 .. 259 276 .. 0.93 12 ? 4.6 0.1 0.0028 23 24 36 .. 297 309 .. 296 312 .. 0.93 13 ? 1.7 0.1 0.023 1.9e+02 24 36 .. 309 321 .. 309 322 .. 0.93 14 ? 4.2 0.1 0.0037 30 24 36 .. 321 333 .. 320 336 .. 0.92 15 ? -0.4 0.1 0.1 8.2e+02 23 36 .. 344 357 .. 340 360 .. 0.92 16 ? -2.1 0.0 0.35 2.8e+03 24 36 .. 357 369 .. 353 370 .. 0.92 17 ? 1.9 0.1 0.02 1.6e+02 24 36 .. 442 454 .. 438 456 .. 0.91 18 ? -3.4 0.1 0.89 7.3e+03 31 36 .. 499 504 .. 497 504 .. 0.87 19 ? 3.2 0.0 0.0079 64 25 36 .. 518 529 .. 516 531 .. 0.89 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.017 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 8 ILQSRKRTHVIPI 20 79**********8 PP == domain 2 score: 3.0 bits; conditional E-value: 0.0088 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 20 ILQSRKQTHVIPI 32 79**********8 PP == domain 3 score: -1.2 bits; conditional E-value: 0.18 EEE-SS-EEEE CS DUF4444 24 llrdetdTrlI 34 +l++ Tr+I T089882_3 32 ILQSRKQTRMI 42 79********9 PP == domain 4 score: 2.2 bits; conditional E-value: 0.016 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 56 ILQSRKRTHVIPI 68 89**********8 PP == domain 5 score: 2.1 bits; conditional E-value: 0.017 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 68 ILQSRKRTHVIPI 80 79**********8 PP == domain 6 score: -1.4 bits; conditional E-value: 0.22 EEE-SS-EEEE CS DUF4444 24 llrdetdTrlI 34 +l++ Tr+I T089882_3 80 ILQSRKQTRMI 90 79********9 PP == domain 7 score: 2.3 bits; conditional E-value: 0.015 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ Tr+IP+ T089882_3 92 ILQSRKRTRVIPI 104 89**********8 PP == domain 8 score: 2.0 bits; conditional E-value: 0.019 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 104 ILQSRKRTHVIPI 116 799*********8 PP == domain 9 score: 2.0 bits; conditional E-value: 0.018 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 116 ILQSRKRTHVIPI 128 79**********8 PP == domain 10 score: -1.2 bits; conditional E-value: 0.18 EEE-SS-EEEE CS DUF4444 24 llrdetdTrlI 34 +l++ T++I T089882_3 152 ILQSRKRTHMI 162 68888889988 PP == domain 11 score: 6.2 bits; conditional E-value: 0.00088 EEEE-SS-EEEE-G CS DUF4444 23 mllrdetdTrlIPl 36 ++l++ Tr+IP+ T089882_3 260 LILQSRKQTRMIPI 273 79***********8 PP == domain 12 score: 4.6 bits; conditional E-value: 0.0028 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ Tr+IP+ T089882_3 297 ILQSRKQTRMIPI 309 79**********8 PP == domain 13 score: 1.7 bits; conditional E-value: 0.023 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 309 ILQSRKRTHVIPI 321 799*********8 PP == domain 14 score: 4.2 bits; conditional E-value: 0.0037 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ T++IP+ T089882_3 321 ILQSRKRTHMIPI 333 79**********8 PP == domain 15 score: -0.4 bits; conditional E-value: 0.1 EEEE-SS-EEEE-G CS DUF4444 23 mllrdetdTrlIPl 36 ++l++ T +IP+ T089882_3 344 LILQSRKRTDVIPI 357 799**********8 PP == domain 16 score: -2.1 bits; conditional E-value: 0.35 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ ++IP+ T089882_3 357 ILQSRKRAHVIPI 369 7999999*****8 PP == domain 17 score: 1.9 bits; conditional E-value: 0.02 EEE-SS-EEEE-G CS DUF4444 24 llrdetdTrlIPl 36 +l++ Tr+IP+ T089882_3 442 ILQSRKRTRVIPI 454 79**********9 PP == domain 18 score: -3.4 bits; conditional E-value: 0.89 EEEE-G CS DUF4444 31 TrlIPl 36 T++IP+ T089882_3 499 THVIPI 504 9****8 PP == domain 19 score: 3.2 bits; conditional E-value: 0.0079 EE-SS-EEEE-G CS DUF4444 25 lrdetdTrlIPl 36 l++ + Tr+IP+ T089882_3 518 LQSRNQTRMIPI 529 89999******8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1191 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.63 # Mc/sec: 5408.33 // Query: T277740_1 [L=2713] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2713 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.76 # Mc/sec: 10212.41 // Query: T277740_2 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.75 # Mc/sec: 10344.76 // Query: T277740_3 [L=2712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2712 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.67 # Mc/sec: 11579.96 // Query: T155276_1 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.70 # Mc/sec: 4753.06 // Query: T155276_2 [L=1163] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1163 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.75 # Mc/sec: 4436.19 // Query: T155276_3 [L=1162] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1162 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.65 # Mc/sec: 5114.28 // Query: T260526_1 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5154.60 // Query: T260526_2 [L=1009] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1009 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.59 # Mc/sec: 4892.50 // Query: T260526_3 [L=1008] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-56 189.4 14.0 3.8e-56 188.6 14.0 1.4 1 MRFAP1 MORF4 family-associated protein1 Domain annotation for each model (and alignments): >> MRFAP1 MORF4 family-associated protein1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 188.6 14.0 2.4e-60 3.8e-56 1 119 [] 252 370 .. 252 370 .. 1.00 Alignments for each domain: == domain 1 score: 188.6 bits; conditional E-value: 2.4e-60 MRFAP1 1 mrPldadearePeedpesllsPvlrevrediaalereharaylrarrklleidslldeikseveaseesaldparsPgaeaeervaklcakaerkakeaa 100 mrP+dadeareP+e+p+s+lsP++r++re++a+lere+ara++rarrkllei+slld+iksevea+e++a++pa+ P+aeaeerva+lca+aerka+eaa T260526_3 252 MRPVDADEAREPREEPGSPLSPAPRAGRENLASLERERARAHWRARRKLLEIQSLLDAIKSEVEAEERGARAPAPRPRAEAEERVARLCAEAERKAAEAA 351 9*************************************************************************************************** PP MRFAP1 101 rmgkrlvelvrriersess 119 rmg+r+vel++ri+++e++ T260526_3 352 RMGRRIVELHQRIAGCECC 370 ******************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1008 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 426 (0.0261254); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 28 (0.00171716); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.70 # Mc/sec: 4119.60 // Query: T317091_1 [L=4371] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4371 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1420 (0.0870845); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 151 (0.00926039); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.49u 0.59s 00:00:06.08 Elapsed: 00:00:01.31 # Mc/sec: 9545.56 // Query: T317091_2 [L=4370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1286 (0.0788667); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 137 (0.00840182); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.92u 0.55s 00:00:05.47 Elapsed: 00:00:01.36 # Mc/sec: 9192.52 // Query: T317091_3 [L=4370] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4370 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1405 (0.0861646); expected 326.1 (0.02) Passed bias filter: 297 (0.0182142); expected 326.1 (0.02) Passed Vit filter: 207 (0.0126947); expected 16.3 (0.001) Passed Fwd filter: 71 (0.00435423); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 5.84u 0.54s 00:00:06.38 Elapsed: 00:00:01.18 # Mc/sec: 10594.77 // Query: T156370_1 [L=2038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 256 (0.0156997); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.69 # Mc/sec: 8449.81 // Query: T156370_2 [L=2038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.74 # Mc/sec: 7878.88 // Query: T156370_3 [L=2038] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2038 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.69 # Mc/sec: 8449.81 // Query: T183319_1 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.60 # Mc/sec: 2593.82 // Query: T183319_2 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.67 # Mc/sec: 2322.82 // Query: T183319_3 [L=544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.56 # Mc/sec: 2730.34 // Query: T198019_1 [L=1544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.72 # Mc/sec: 6134.89 // Query: T198019_2 [L=1544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 6495.77 // Query: T198019_3 [L=1544] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1544 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.73 # Mc/sec: 6050.85 // Query: T005110_1 [L=2682] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2682 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.67 # Mc/sec: 11451.86 // Query: T005110_2 [L=2681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.68 # Mc/sec: 11279.24 // Query: T005110_3 [L=2681] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2681 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.71 # Mc/sec: 10802.66 // Query: T052036_1 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 896 (0.0549491); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.61 # Mc/sec: 3944.19 // Query: T052036_2 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1345 (0.082485); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.70 # Mc/sec: 3437.08 // Query: T052036_3 [L=840] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (840 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1397 (0.085674); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.41s 00:00:01.46 Elapsed: 00:00:00.67 # Mc/sec: 3586.71 // Query: T067006_1 [L=531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 881 (0.0540292); expected 326.1 (0.02) Passed bias filter: 424 (0.0260027); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.49 # Mc/sec: 3100.21 // Query: T067006_2 [L=531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.65 # Mc/sec: 2337.08 // Query: T067006_3 [L=530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.56 # Mc/sec: 2707.57 // Query: T294686_1 [L=1691] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1691 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 7114.21 // Query: T294686_2 [L=1690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 439 (0.0269226); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 8953.34 // Query: T294686_3 [L=1690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-05 22.8 2.3 0.32 11.0 0.0 4.1 4 Mucin-like Mucin-like Domain annotation for each model (and alignments): >> Mucin-like Mucin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.02 3.2e+02 16 47 .. 14 46 .. 12 101 .. 0.56 2 ! 11.0 0.0 2e-05 0.32 20 88 .. 124 193 .. 116 200 .. 0.75 3 ! 8.6 0.0 0.00011 1.7 18 80 .. 178 240 .. 172 263 .. 0.48 4 ? 1.0 1.2 0.026 4.2e+02 61 93 .. 289 321 .. 282 329 .. 0.59 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.02 Mucin-like 16 sygepsraPsssytaps.rapsssygepprdps 47 s+ +p aP++++ a + ap++s++++pr+ T294686_3 14 SFNPPLCAPEHGFNAAPvCAPEHSFNAAPRTAQ 46 445555566666555544566666666665433 PP == domain 2 score: 11.0 bits; conditional E-value: 2e-05 Mucin-like 20 psraPsssytapsrapsssygepprdp.sssytapqsapsssytappstpsssygeppaapsssytappr 88 p aP++++ p ap++s++++p ++s+ +p ap++s+ +p +p+ + ++p ap+ + p T294686_3 124 PLCAPEHGFNPPVCAPEHSFNAAPLCVlEHSFNPPLCAPEHSVNPPLCAPEHGFNPPLCAPEHGFNPPLC 193 5558888888888888888888886652577777777888888888888888888888888877776654 PP == domain 3 score: 8.6 bits; conditional E-value: 0.00011 Mucin-like 18 gepsraPsssytapsrapsssygepprdpsssytapqsapsssytappstpsssygeppaaps 80 +p aP++++ p ap++ +++p +p++ + +p ap++ + +p +p+ + ++p p+ T294686_3 178 NPPLCAPEHGFNPPLCAPEHGFNPPVCAPEHGFNPPVCAPEHGFNPPVCAPEHGFNPPLCVPE 240 344444444444444444444444444444444444444444444444444444444433333 PP == domain 4 score: 1.0 bits; conditional E-value: 0.026 Mucin-like 61 ytappstpsssygeppaapsssytapprdpsss 93 ++p+ p +ge +++ ++y++++++ +s T294686_3 289 LKEPSTGPRTQSGELSPTEVKNYYQAQQPKGGS 321 445555555555555555555555555555443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.68 # Mc/sec: 7110.00 // Query: T010863_1 [L=1749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.61 # Mc/sec: 8202.61 // Query: T010863_2 [L=1749] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1749 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.71 # Mc/sec: 7047.31 // Query: T010863_3 [L=1748] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1748 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 95 (0.00582608); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 7463.78 // Query: T229036_1 [L=1837] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-10 38.4 0.0 1.1e-09 37.9 0.0 1.1 1 GAIN GPCR-Autoproteolysis INducing (GAIN) domain Domain annotation for each model (and alignments): >> GAIN GPCR-Autoproteolysis INducing (GAIN) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.9 0.0 6.8e-14 1.1e-09 112 210 .] 71 240 .. 58 240 .. 0.95 Alignments for each domain: == domain 1 score: 37.9 bits; conditional E-value: 6.8e-14 GAIN 112 vlsvdvldtenskearlprfpskirgqrpkdledsvklpkkalke....................................................... 156 vl+vd++d+ n+++ar+p f i+++ p++le+s+++p++++k+ T229036_1 71 VLAVDIFDKFNFTGARVPWFDA-IHEEFPRELESSISFPANFFKPpeekvlr*rlsililksemlqnlnllehqpdt*rkcsleegplvrpasrrttpqt 169 89********************.9**************************************************************************** PP GAIN 157 ...................snseg.evvvvfvlYrnLgslLpepsktkyeadrrslrlpsr.vvnSpVvsasvsk 210 ++ +g + + +++Y + g+l pe y+++rrsl lp+ ++n++ vsa v++ T229036_1 170 trpgpgtegeapisr*krhPDDTG*FTFTLVIVYCTPGQLPPE----PYDPNRRSLWLPHWpIINTSMVSALVYS 240 ******************75645****************9998....8***********************9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1837 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.66 # Mc/sec: 7962.64 // Query: T229036_2 [L=1836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00079 19.9 0.2 0.013 16.0 0.1 2.8 2 GPS GPCR proteolysis site, GPS, motif Domain annotation for each model (and alignments): >> GPS GPCR proteolysis site, GPS, motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.1 8.1e-07 0.013 10 42 .] 1076 1109 .. 1073 1109 .. 0.87 2 ? 0.2 0.0 0.07 1.1e+03 13 22 .. 1206 1215 .. 1202 1227 .. 0.80 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 8.1e-07 GPS 10 nntgsWseeGC..ltsdnstetvCsCnHLtsFAiL 42 ++tg+Ws +G l+ n t++v +C+H+ sF +L T229036_2 1076 SGTGGWSARGFklLS-RNRTHVVRQCSHTASFEVL 1109 579********8544.6***************766 PP == domain 2 score: 0.2 bits; conditional E-value: 0.07 GPS 13 gsWseeGClt 22 +Ws +GC++ T229036_2 1206 QRWSVRGCRS 1215 69******54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.75 # Mc/sec: 7003.31 // Query: T229036_3 [L=1836] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1836 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.81 # Mc/sec: 6484.55 // Query: T259532_1 [L=316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.69 # Mc/sec: 1310.18 // Query: T259532_2 [L=316] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (316 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.62 # Mc/sec: 1458.10 // Query: T259532_3 [L=315] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (315 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.56 # Mc/sec: 1580.98 // Query: T126473_1 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.70 # Mc/sec: 4736.72 // Query: T126473_2 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.78 # Mc/sec: 4250.90 // Query: T126473_3 [L=1159] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1159 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.67 # Mc/sec: 4948.81 // Query: T137780_1 [L=2212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.8 4.6 1.3e+02 2.5 0.1 5.7 6 BmKX BmKX Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.009 1.5e+02 4 19 .. 1695 1710 .. 1694 1718 .. 0.85 2 ? 2.4 0.0 0.009 1.5e+02 4 19 .. 1739 1754 .. 1738 1762 .. 0.85 3 ? 2.4 0.0 0.009 1.5e+02 4 19 .. 1783 1798 .. 1782 1806 .. 0.85 4 ? -0.4 0.1 0.069 1.1e+03 5 21 .. 1812 1828 .. 1811 1835 .. 0.83 5 ? 2.5 0.1 0.0083 1.3e+02 4 19 .. 1855 1870 .. 1854 1878 .. 0.85 6 ? -1.0 0.0 0.11 1.7e+03 4 18 .. 1927 1941 .. 1926 1950 .. 0.79 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.009 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_1 1695 GECEARPGRALLTAGV 1710 9*************96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.009 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_1 1739 GECEARPGRALLTAGV 1754 9*************96 PP == domain 3 score: 2.4 bits; conditional E-value: 0.009 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_1 1783 GECEARPGRALLTAGV 1798 9*************96 PP == domain 4 score: -0.4 bits; conditional E-value: 0.069 BmKX 5 ECkakgeAamCTaGtdd 21 EC a+ + +C G + T137780_1 1812 ECEARPGRVLCATGVSA 1828 9***********99764 PP == domain 5 score: 2.5 bits; conditional E-value: 0.0083 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137780_1 1855 GECEARPGRVLCATGV 1870 9***********9996 PP == domain 6 score: -1.0 bits; conditional E-value: 0.11 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + a T G T137780_1 1927 GECEARPGRAFLTTG 1941 9****9888887877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.56 # Mc/sec: 11300.28 // Query: T137780_2 [L=2212] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.064 13.1 8.7 1.2e+02 2.7 0.0 6.2 6 BmKX BmKX 0.8 9.5 4.9 1.8e+02 2.0 0.0 4.4 4 DUF3903 Domain of unknown function (DUF3903) Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.07 5.7e+02 4 19 .. 1680 1695 .. 1679 1703 .. 0.83 2 ? 2.4 0.0 0.018 1.5e+02 4 19 .. 1724 1739 .. 1723 1747 .. 0.85 3 ? 2.4 0.0 0.018 1.5e+02 4 19 .. 1768 1783 .. 1767 1791 .. 0.85 4 ? 2.7 0.0 0.014 1.2e+02 4 19 .. 1840 1855 .. 1839 1864 .. 0.83 5 ? 0.5 0.0 0.07 5.7e+02 4 19 .. 1912 1927 .. 1911 1935 .. 0.83 6 ? 1.3 1.3 0.04 3.2e+02 4 18 .. 1956 1970 .. 1955 1971 .. 0.93 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.07 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ T G T137780_2 1680 GECEARPGRALLTTGV 1695 9*****9999999996 PP == domain 2 score: 2.4 bits; conditional E-value: 0.018 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_2 1724 GECEARPGRALLTAGV 1739 9*************96 PP == domain 3 score: 2.4 bits; conditional E-value: 0.018 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_2 1768 GECEARPGRALLTAGV 1783 9*************96 PP == domain 4 score: 2.7 bits; conditional E-value: 0.014 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137780_2 1840 GECEARPGRVLCATGV 1855 9***********9996 PP == domain 5 score: 0.5 bits; conditional E-value: 0.07 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ T G T137780_2 1912 GECEARPGRALLTTGV 1927 9*****9999999996 PP == domain 6 score: 1.3 bits; conditional E-value: 0.04 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + +C G T137780_2 1956 GECEARPGGVLCATG 1970 9***********988 PP >> DUF3903 Domain of unknown function (DUF3903) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.022 1.8e+02 14 26 .. 1679 1691 .. 1674 1695 .. 0.89 2 ? 1.6 0.1 0.03 2.4e+02 14 26 .. 1723 1735 .. 1719 1738 .. 0.91 3 ? 1.6 0.1 0.03 2.4e+02 14 26 .. 1767 1779 .. 1763 1782 .. 0.91 4 ? 1.9 0.0 0.024 2e+02 14 26 .. 1911 1923 .. 1907 1927 .. 0.90 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.022 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137780_2 1679 RGECEARPGRALL 1691 99**********8 PP == domain 2 score: 1.6 bits; conditional E-value: 0.03 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137780_2 1723 RGECEARPGRALL 1735 89**********9 PP == domain 3 score: 1.6 bits; conditional E-value: 0.03 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137780_2 1767 RGECEARPGRALL 1779 89**********9 PP == domain 4 score: 1.9 bits; conditional E-value: 0.024 DUF3903 14 RAECKRRFGKALL 26 R EC R G+ALL T137780_2 1911 RGECEARPGRALL 1923 89**********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2212 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.47 # Mc/sec: 13464.16 // Query: T137780_3 [L=2211] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.036 13.9 0.3 1.2e+02 2.7 0.0 4.5 4 BmKX BmKX Domain annotation for each model (and alignments): >> BmKX BmKX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.0 0.009 1.5e+02 4 19 .. 1709 1724 .. 1708 1732 .. 0.85 2 ? 2.4 0.0 0.009 1.5e+02 4 19 .. 1753 1768 .. 1752 1776 .. 0.85 3 ? -1.4 0.0 0.14 2.2e+03 4 18 .. 1825 1839 .. 1824 1848 .. 0.80 4 ? 2.7 0.0 0.0071 1.2e+02 4 19 .. 1941 1956 .. 1940 1965 .. 0.83 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.009 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_3 1709 GECEARPGRALLTAGV 1724 9*************96 PP == domain 2 score: 2.4 bits; conditional E-value: 0.009 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + a+ TaG T137780_3 1753 GECEARPGRALLTAGV 1768 9*************96 PP == domain 3 score: -1.4 bits; conditional E-value: 0.14 BmKX 4 GECkakgeAamCTaG 18 GEC a+ + + T G T137780_3 1825 GECEARPGRVLLTTG 1839 9****9988888887 PP == domain 4 score: 2.7 bits; conditional E-value: 0.0071 BmKX 4 GECkakgeAamCTaGt 19 GEC a+ + +C G T137780_3 1941 GECEARPGRVLCATGV 1956 9***********9996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2211 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.51 # Mc/sec: 12402.54 // Query: T337186_1 [L=6488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1894 (0.116154); expected 326.1 (0.02) Passed bias filter: 414 (0.0253894); expected 326.1 (0.02) Passed Vit filter: 333 (0.0204219); expected 16.3 (0.001) Passed Fwd filter: 48 (0.0029437); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.60u 0.46s 00:00:05.05 Elapsed: 00:00:00.89 # Mc/sec: 20855.13 // Query: T337186_2 [L=6488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1528 (0.0937078); expected 326.1 (0.02) Passed bias filter: 485 (0.0297437); expected 326.1 (0.02) Passed Vit filter: 417 (0.0255734); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.59u 0.48s 00:00:05.07 Elapsed: 00:00:00.90 # Mc/sec: 20623.41 // Query: T337186_3 [L=6487] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6487 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1488 (0.0912548); expected 326.1 (0.02) Passed bias filter: 296 (0.0181528); expected 326.1 (0.02) Passed Vit filter: 204 (0.0125107); expected 16.3 (0.001) Passed Fwd filter: 29 (0.00177849); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.17u 0.44s 00:00:03.61 Elapsed: 00:00:00.75 # Mc/sec: 24744.27 // Query: T051313_1 [L=2580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 760 (0.0466086); expected 326.1 (0.02) Passed bias filter: 241 (0.0147798); expected 326.1 (0.02) Passed Vit filter: 50 (0.00306636); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.55 # Mc/sec: 13419.89 // Query: T051313_2 [L=2580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 567 (0.0347725); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.52 # Mc/sec: 14194.12 // Query: T051313_3 [L=2580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 576 (0.0353244); expected 326.1 (0.02) Passed bias filter: 209 (0.0128174); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.54 # Mc/sec: 13668.41 // Query: T115942_1 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-50 169.7 0.5 6.4e-50 169.1 0.5 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 5.2e-09 36.1 0.4 9.5e-09 35.2 0.4 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 169.1 0.5 7.8e-54 6.4e-50 1 168 [. 690 860 .. 690 861 .. 0.89 Alignments for each domain: == domain 1 score: 169.1 bits; conditional E-value: 7.8e-54 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrp..rvnyl 95 +vtw+d +evy+ndsvw+pgp+d+r p++peeegm++n+sigyr+ppiclg a g l q w+v vp + + + h +sg +++ ++y T115942_1 690 SVTWLDPLVEVYINDSVWMPGPTDNRGPTHPEEEGMLMNVSIGYRFPPICLGPAAGFLNYDKQIWMVYVPAHNG-PKASIHAISGRTFQSldTIKYP 785 59********************************************************************8754.5678899999887752245554 PP HERV-K_env_2 96 qd...fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 + +++++ kf+p+ kpcp++ k s + +vl we+c+ansa +lqnn +g iidwaprg+f nc+gq + c T115942_1 786 EHgyvMTHRQINKFKPNKKPCPRQATKWSGKLKVLTWEDCIANSAAVLQNNSYG-IIDWAPRGHFAVNCTGQCKDC 860 4322145566679****************************************9.89****************999 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.4 1.2e-12 9.5e-09 5 87 .. 1066 1149 .. 1063 1162 .. 0.90 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 1.2e-12 XXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHH...E..CCSHHHCXXXXXXX...XX. CS GP41 5 slaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklr...ChanykliCvTkvpynase.sWe 87 +l ++q+ +v++ +kn k + Q +id+kl +++n l + v+ +G++++sl+++++++ C+T+ yn++e W T115942_1 1066 ALYSSIQTVGFVDSWQKNSSKLWNSQSQIDQKLANQINDLHQTVIWMGDQIMSLEHRIHMQrd*N---TSDFCITPSSYNTTEhHWV 1149 8999*********************************************************7774...3456***********9995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 12657.82 // Query: T115942_2 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-10 38.6 1.1 1.4e-09 37.7 1.1 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 1.1 8.7e-14 1.4e-09 3 86 .. 598 679 .. 596 680 .. 0.88 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 8.7e-14 HERV-K_REC 3 aplthkmnkmvtseeqmklpstkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyg 86 apl h+m +m s eqm t +a ppt q+++l+ +a l t +++a + ++s+ v+l++ ++ ++ y+ T115942_2 598 APLVHQMAQMNISVEQMETSKTCQATPPTCGQMRRLAHIADENLRSQNKLLTTSNLMIAMMAVISLAVSLPVAGAD--QNYIYW 679 9*******************************************99888888888888999999**9999876554..456666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 353 (0.0216485); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.53 # Mc/sec: 12657.82 // Query: T115942_3 [L=2344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.52 # Mc/sec: 12895.74 // Query: T295805_1 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 185 (0.0113455); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 10424.86 // Query: T295805_2 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.51 # Mc/sec: 10220.46 // Query: T295805_3 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.47 # Mc/sec: 11090.28 // Query: T357984_1 [L=919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (919 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 798 (0.048939); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.48 # Mc/sec: 5477.30 // Query: T357984_2 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1151 (0.0705875); expected 326.1 (0.02) Passed bias filter: 169 (0.0103643); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 5359.68 // Query: T357984_3 [L=918] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (918 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 854 (0.0523734); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48 # Mc/sec: 5471.34 // Query: T316255_1 [L=1387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1387 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.45 # Mc/sec: 8817.71 // Query: T316255_2 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.48 # Mc/sec: 8260.65 // Query: T316255_3 [L=1386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.48 # Mc/sec: 8260.65 // Query: T002453_1 [L=3698] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3698 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.60 # Mc/sec: 17632.25 // Query: T002453_2 [L=3697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.57 # Mc/sec: 18235.33 // Query: T002453_3 [L=3697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.09u 0.30s 00:00:01.39 Elapsed: 00:00:00.59 # Mc/sec: 17926.25 // Query: T289511_1 [L=866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.54 # Mc/sec: 4587.92 // Query: T289511_2 [L=866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.53 # Mc/sec: 4674.49 // Query: T289511_3 [L=866] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (866 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.54 # Mc/sec: 4587.92 // Query: T103721_1 [L=3328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.59 # Mc/sec: 16137.02 // Query: T103721_2 [L=3328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-142 474.2 20.5 2.8e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.029 14.5 0.0 0.055 13.6 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.058 13.0 10.5 0.11 12.2 10.5 1.3 1 IncA IncA protein 0.059 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.4 5.0 0.68 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.41 9.8 12.3 0.73 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 2.7 8.1 7.4 4.8 7.4 6.6 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.8e-142 1 368 [] 2883 3218 .. 2883 3218 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103721_2 2883 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 2968 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103721_2 2969 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3025 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103721_2 3026 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3118 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103721_2 3119 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3211 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103721_2 3212 QLLQNHA 3218 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.7e-05 0.055 1 72 [. 3253 3322 .. 3253 3327 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.7e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103721_2 3253 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3322 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 10.5 5.3e-05 0.11 76 175 .. 2907 3030 .. 2873 3037 .. 0.83 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.3e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103721_2 2907 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3000 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103721_2 3001 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3030 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.2e-05 0.11 3 94 .. 2948 3037 .. 2946 3039 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.2e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103721_2 2948 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3037 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00033 0.68 3 95 .. 2934 3035 .. 2933 3037 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00033 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103721_2 2934 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3028 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103721_2 3029 QEIWDYV 3035 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.73 30 124 .. 2936 3030 .. 2932 3037 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103721_2 2936 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3030 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 2.1 2.7 5.4e+03 77 96 .. 958 972 .. 944 975 .. 0.43 2 ? 15.4 2.1 6.9e-06 0.014 44 96 .. 2941 2993 .. 2934 2999 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103721_2 958 SKKKKRKKERKKR-----KK 972 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 6.9e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103721_2 2941 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 2993 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 6.6 0.0024 4.8 28 89 .. 2966 3025 .. 2946 3033 .. 0.71 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0024 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103721_2 2966 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3025 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 903 (0.0553784); expected 326.1 (0.02) Passed bias filter: 354 (0.0217098); expected 326.1 (0.02) Passed Vit filter: 72 (0.00441555); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.83 # Mc/sec: 11470.89 // Query: T103721_3 [L=3327] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3327 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.30s 00:00:01.63 Elapsed: 00:00:00.84 # Mc/sec: 11330.93 // Query: T052636_1 [L=967] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (967 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.59 # Mc/sec: 4688.85 // Query: T052636_2 [L=966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.71 # Mc/sec: 3892.34 // Query: T052636_3 [L=966] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (966 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.62 # Mc/sec: 4457.36 // Query: T175226_1 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 285 (0.0174782); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.73 # Mc/sec: 2543.40 // Query: T175226_2 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.64 # Mc/sec: 2901.06 // Query: T175226_3 [L=648] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (648 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 416 (0.0255121); expected 326.1 (0.02) Passed bias filter: 184 (0.0112842); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 3370.58 // Query: T268992_1 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.065 12.7 0.0 0.15 11.5 0.0 1.6 1 HTH_24 Winged helix-turn-helix DNA-binding Domain annotation for each model (and alignments): >> HTH_24 Winged helix-turn-helix DNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 9.5e-06 0.15 11 39 .. 170 198 .. 167 199 .. 0.91 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 9.5e-06 HTH_24 11 lLqknprisqreLAerlglSpstvnrrlk 39 +++++p ++ +e+A++l++ s v ++lk T268992_1 170 IIEADPLTTTQEVAKELDVDHSRVAWHLK 198 6778************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5204.70 // Query: T268992_2 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-19 67.4 0.8 1e-18 66.8 0.0 1.8 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.019 14.6 0.1 0.037 13.6 0.1 1.4 1 DDE_3 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.8 0.0 1.3e-22 1e-18 11 80 .] 261 329 .. 258 329 .. 0.96 2 ? -4.7 0.5 2 1.6e+04 61 75 .. 876 890 .. 876 891 .. 0.80 Alignments for each domain: == domain 1 score: 66.8 bits; conditional E-value: 1.3e-22 Transposase_1 11 WldkgetpkkvpkpelhqkkvmltVwW.sakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 Wld++e+pk++p+p+lhqk W sa+gli y+fl+pgeti se Yaqq+ +++qkl +++ alvnr T268992_2 261 WLDREEAPKHFPNPNLHQKEGHG--HW*SADGLIRYSFLNPGETIISEDYAQQIYEMHQKLPHLQLALVNR 329 ********************965..5*******************************************97 PP == domain 2 score: -4.7 bits; conditional E-value: 2 Transposase_1 61 qqldklrqklqekrp 75 q l++++ +lqek + T268992_2 876 QNLQRTHTNLQEKNK 890 568999999999865 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 4.6e-06 0.037 79 143 .. 323 392 .. 289 394 .. 0.71 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 4.6e-06 DDE_3 79 k.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEi.vwsklkrellkrrsfksld 143 + + +l+ Dna+ H ++ + +++++ + ++l P+ySP+l ++++l + l+ ++f++++ T268992_2 323 QlalvnrkGPILLHDNAQPHVAQPMLQKFNA--LGYQVLAHPSYSPDLSSTDYhFFKHLHNFLQV-KRFHNQQ 392 2334444478*********************..***************98886155666666666.5555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 4494.97 // Query: T268992_3 [L=1037] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 15.2 0.1 0.022 14.2 0.1 1.4 1 DUF4417 Domain of unknown function (DUF4417) Domain annotation for each model (and alignments): >> DUF4417 Domain of unknown function (DUF4417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.1 1.4e-06 0.022 65 111 .. 689 735 .. 656 738 .. 0.81 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.4e-06 DUF4417 65 kqlsavlsPdfSlysdaPlamqlwniyrsraiaeylqeaGisviPtl 111 ++ +++ Pdf ly+ + + +w y++r i ++ ++ ++iP++ T268992_3 689 NKAGGITLPDFKLYYKTTVTKTAWYWYQNRDIDQWNRTEPSEIIPHI 735 34489*****************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1037 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 573 (0.0351404); expected 326.1 (0.02) Passed bias filter: 244 (0.0149638); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.61 # Mc/sec: 4863.41 // Query: T370302_1 [L=495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1297 (0.0795413); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 2360.18 // Query: T370302_2 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 744 (0.0456274); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 2479.39 // Query: T370302_3 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 734 (0.0450141); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 27 (0.00165583); expected 16.3 (0.001) Passed Fwd filter: 8 (0.000490617); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.62 # Mc/sec: 2279.44 // Query: T353311_1 [L=1569] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1569 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.65 # Mc/sec: 6905.60 // Query: T353311_2 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 7009.03 // Query: T353311_3 [L=1568] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1568 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.67 # Mc/sec: 6695.20 // Query: T225065_1 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.52 # Mc/sec: 2277.66 // Query: T225065_2 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 349 (0.0214032); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 1910.30 // Query: T225065_3 [L=414] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (414 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 224 (0.0137373); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.57 # Mc/sec: 2042.04 // Query: T052695_1 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3274.06 // Query: T052695_2 [L=721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (721 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 355 (0.0217711); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3274.06 // Query: T052695_3 [L=720] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (720 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.61 # Mc/sec: 3376.72 // Query: T167929_1 [L=863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-16 58.5 1.3 3.5e-16 58.5 1.3 2.0 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00018 21.3 0.0 0.00029 20.6 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) ------ inclusion threshold ------ 0.017 15.0 0.1 0.034 14.1 0.1 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) of Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.5 1.3 6.5e-20 3.5e-16 2 34 .. 492 524 .. 491 526 .. 0.92 2 ? -4.0 1.7 2.1 1.2e+04 12 20 .. 623 631 .. 622 631 .. 0.85 Alignments for each domain: == domain 1 score: 58.5 bits; conditional E-value: 6.5e-20 --B-TTT-SSBS-TTT---SEEGGGEE---XXX CS zf-CCHC_5 2 pglCpRCkkgkHwardChskfdknGnpLsaneg 34 pgl ++CkkgkHwa++Chskfdk+Gnp s n T167929_1 492 PGLYLKCKKGKHWANQCHSKFDKDGNPISRNAM 524 8999************************98765 PP == domain 2 score: -4.0 bits; conditional E-value: 2.1 BS-TTT--- CS zf-CCHC_5 12 kHwardChs 20 +Hw + C s T167929_1 623 THWWQHCPS 631 8***99976 PP >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.0 5.3e-08 0.00029 43 113 .. 276 348 .. 266 352 .. 0.83 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 5.3e-08 Gag_p24 43 r..vgssqla.aqlwkeeleeeekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalek 113 ++ ++l+ +++w +e + + ++++pi+++ d+ll g a + q+ ++ +v+ q+r ++++a+ek T167929_1 276 AclAPAQFLQfKTWWPDEASIQ-AACSAQIQPPINVTTDQLLRVGGWAALDAQVVMQDDVIDQLRGVCIRAWEK 348 2236677778889999998888.677778889**************999888888888**************98 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.1 6.3e-06 0.034 23 47 .. 643 667 .. 640 677 .. 0.83 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 6.3e-06 HERV-K_REC 23 stkkaepptwaqlkkltqlatkyle 47 t + +pptw q+kkl+q+ l T167929_1 643 NTHRKQPPTWGQIKKLSQMVEENLR 667 588999************9877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.74 # Mc/sec: 3336.35 // Query: T167929_2 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-29 102.4 0.0 2.8e-24 86.0 0.0 2.2 2 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 3.2e-06 26.8 0.1 6.6e-06 25.8 0.1 1.5 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 3.4e-06 0.028 1 39 [. 232 272 .. 232 282 .. 0.83 2 ! 86.0 0.0 3.4e-28 2.8e-24 112 205 .] 347 440 .. 338 440 .. 0.93 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 3.4e-06 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalae..qalpkdlek 39 +k L+++k+a++qygp sp+v+ l +++a+ q++p d T167929_2 232 FKLLNEFKQAINQYGPRSPFVMGLSKNVATssQMIPIDGTL 272 689**********************9997522668888655 PP == domain 2 score: 86.0 bits; conditional E-value: 3.4e-28 Gag_p24 112 ekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkll.kplrknstledmlraCqgvggavhkarvl 205 +ki + g++ + ++ ++QGpkEpy df+a l+++l+k++ad +a+d++++ La++NANp+Cq++l ++ ++ l d+++aC+ +gg hka +l T167929_2 347 KKISSGGEQYPYFSAVKQGPKEPYADFIAWLQESLKKVIADSTAQDIVLQLLAFDNANPKCQAAL*PVRG-KAHLVDYIKACDSIGGNLHKATLL 440 78999999999***************************************************99776544.689******************986 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.8 0.1 8.1e-10 6.6e-06 43 83 .. 61 101 .. 61 102 .. 0.88 Alignments for each domain: == domain 1 score: 25.8 bits; conditional E-value: 8.1e-10 Gag_p10 43 GtldletWkkvgkelkkqateqg.ekipldvlsiwklirevL 83 G +d+e+W+ vg+ lk +a + g e ip++v+s+w+li++ L T167929_2 61 GNMDVEVWEEVGSALK-KAYKDGaEDIPITVWSVWALIHSTL 101 789*************.5555666**************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 264 (0.0161904); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 4652.90 // Query: T167929_3 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-05 22.7 0.0 0.0001 21.9 0.0 1.3 1 Gag_p10 Retroviral GAG p10 protein Domain annotation for each model (and alignments): >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.0 6.4e-09 0.0001 2 42 .. 20 60 .. 19 62 .. 0.88 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 6.4e-09 Gag_p10 2 kelFlkalkaLlkerGikvsksk.lekflqtveevcPWFpee 42 ++ +l++ ++Ll++ G+kvs+ + l +++++ve++cPWFp e T167929_3 20 HKAYLSLPRQLLRKGGVKVST-S*LMQLFSMVEKYCPWFPTE 60 577999999**********96.6667899***********87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 99 (0.00607138); expected 326.1 (0.02) Passed bias filter: 56 (0.00343432); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.66 # Mc/sec: 3736.42 // Query: T316351_1 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 271 (0.0166196); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:00.76 # Mc/sec: 17680.68 // Query: T316351_2 [L=4697] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4697 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.37s 00:00:01.99 Elapsed: 00:00:00.86 # Mc/sec: 15624.79 // Query: T316351_3 [L=4696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4696 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.71 # Mc/sec: 18921.77 // Query: T138395_1 [L=920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.56 # Mc/sec: 4617.48 // Query: T138395_2 [L=920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.63 # Mc/sec: 4177.72 // Query: T138395_3 [L=920] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (920 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.69 # Mc/sec: 3814.44 // Query: T081230_1 [L=3649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.34s 00:00:01.70 Elapsed: 00:00:00.73 # Mc/sec: 14300.23 // Query: T081230_2 [L=3649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-54 183.4 2.6 5.1e-54 183.4 2.6 1.8 2 Transposase_22 L1 transposable element 0.00033 20.4 0.0 0.0006 19.5 0.0 1.4 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 183.4 2.6 6.2e-58 5.1e-54 166 353 .. 994 1180 .. 991 1194 .. 0.93 2 ? -1.0 0.4 0.068 5.6e+02 303 359 .. 1981 2045 .. 1977 2051 .. 0.63 Alignments for each domain: == domain 1 score: 183.4 bits; conditional E-value: 6.2e-58 HHHHHHHHHHHHHHHHHH.HHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEES CS Transposase_22 166 vkerekrkkileqslqvi.qdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrtt 256 k ++kr+++ +qslq++ + + Pnl +iG++e+e e+ k len++ iie nfP l+++++++iqe++ tP ++ kr+ +r i++r++ T081230_2 994 MKTKKKRIRKYKQSLQEV*D-Y-FK*PNLVVIGIPEQE-ENSKSLENTFGRIIEGNFPSLARDLDIQIQEAQTTPGKFIAKRSLPRCIVIRLS 1083 57888999999999998554.3.389**********87.789*************************************************** PP SHHHHHHHHHHHHHHS-.EEETTEEEEEEE---HHHHHHHHHHHHHHHHHH.HTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHH CS Transposase_22 257 kvlnkdkilkavrekGr.vtlkGkPirltadlsaetlkarrewtdviqilk.ekkfqPrllyPaklsiiidGeikvfidktklrdylstrPal 347 kv++k++il+avr+k + vt+kGkPirltad+s etl+arr+w++++ +lk + ++q r+lyP kls i +G i+ f dk++lr++ +P l T081230_2 1084 KVKTKERILRAVRQK-H*VTYKGKPIRLTADFSVETLQARRDWGPIFSLLK*N-NYQLRILYPVKLSTIYKGKIQSFSDKQMLREFAISKPPL 1174 *************98.9*******************************99777.79************************************* PP HHHHTT CS Transposase_22 348 krllke 353 + llk T081230_2 1175 QALLKG 1180 ****97 PP == domain 2 score: -1.0 bits; conditional E-value: 0.068 HHHHHTT---EEETTTEEEEES....SSSEEEESSHH....HHHHHHTT-HHHHHHHTTT-SSXS CS Transposase_22 303 qilkekkfqPrllyPaklsiii....dGeikvfidkt....klrdylstrPalkrllkeknerkd 359 q+lk ++f + l l + i Ge k+f dk + + y + + +l rl+k e+k+ T081230_2 1981 QTLKTQQFSEKKLSVGELELAIkkkmSGEEKYFLDKFvvlfMSHYYCTSKKTLLRLVKKIIEKKE 2045 566666665555544444443311227*********72222345688899999999998777765 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 7.3e-08 0.0006 1 71 [. 1338 1407 .. 1338 1429 .. 0.83 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 7.3e-08 Exo_endo_phos_2 1 lliisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehsls 71 ++i ++Y p++ + + +++ l++l++e +s ++ii+GDfN + ++ g +++++ +++ +L +le+ +l+ T081230_2 1338 ITILNLYAPNTG-APKFIKQLLTDLRNEIDS-NTIIVGDFNTPLTALGRSSRQKvNKETMDLNYTLEQMDLT 1407 68999***9999.888888999999999987.7****************88887889999999999988888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 314 (0.0192567); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.46u 0.32s 00:00:01.78 Elapsed: 00:00:00.71 # Mc/sec: 14703.05 // Query: T081230_3 [L=3649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-06 25.0 0.1 2e-05 24.0 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.1 1.2e-09 2e-05 2 19 .] 1864 1881 .. 1864 1881 .. 0.96 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 1.2e-09 DUF1725 2 FagKWMELEnIILSEisQ 19 Fa +WM LE+IILSE++Q T081230_3 1864 FAVTWMRLETIILSEVTQ 1881 888**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3649 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 338 (0.0207286); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.41u 0.37s 00:00:01.77 Elapsed: 00:00:00.76 # Mc/sec: 13735.75 // Query: T351121_1 [L=1838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.025 14.3 0.1 0.076 12.8 0.1 1.7 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.1 4.6e-06 0.076 15 43 .. 921 953 .. 917 960 .. 0.80 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 4.6e-06 Transposase_1 15 getpkkvpkpelhqkk....vmltVwWsakgli 43 +e+pk++pkp+lhqkk +++ ++Ws l+ T351121_1 921 EEAPKHFPKPNLHQKKgqghCLVVCCWSDPPLL 953 699***********7755558999999986655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 146 (0.00895376); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.93u 0.23s 00:00:01.16 Elapsed: 00:00:00.76 # Mc/sec: 6918.69 // Query: T351121_2 [L=1838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-21 74.0 7.5 1.5e-20 72.7 4.6 2.5 2 Transposase_1 Transposase (partial DDE domain) 0.0027 17.3 0.3 0.0048 16.5 0.3 1.4 1 DDE_3 DDE superfamily endonuclease ------ inclusion threshold ------ 0.055 13.6 0.0 0.12 12.4 0.0 1.5 1 BEN BEN domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 0.055 3e+02 25 38 .. 731 744 .. 727 746 .. 0.80 2 ! 72.7 4.6 2.7e-24 1.5e-20 14 79 .. 916 985 .. 895 986 .. 0.86 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.055 Transposase_1 25 elhqkkvmltVwWs 38 e+ k+ mlt+ Ws T351121_2 731 EKLSKNAMLTIVWS 744 45569********8 PP == domain 2 score: 72.7 bits; conditional E-value: 2.7e-24 Transposase_1 14 kgetpkkvpkpelhq....kkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvn 79 +g+t+kk+++++++q kkv +tVwWsa+gli+ l+pg+titse+Yaqq+++lrqklq+++ alvn T351121_2 916 SGWTEKKLQSTSQSQtctkKKVRVTVWWSAAGLIHRCSLNPGKTITSEKYAQQINELRQKLQHLQLALVN 985 4556667777666666666*************************************************98 PP >> DDE_3 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.3 8.9e-07 0.0048 55 143 .. 956 1049 .. 889 1051 .. 0.76 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 8.9e-07 DDE_3 55 feetlnaedfaeflerlletalqak.......kivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksld 143 +t+++e+ a+++++l ++ ++ + + +l+ Dna+ H +++ +++++ + ++ PpySP+ p + k +++l+ + f++++ T351121_2 956 PGKTITSEKYAQQINELRQKLQHLQlalvnitGPILLHDNAQLHLAQAALQKLNK--LGYIVFPHPPYSPDVLPTNYHFFKYLNNFLQGKHFHNQQ 1049 45799999999999999998888879999999***********************..99999999******9998866555444444446666654 PP >> BEN BEN domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 2.3e-05 0.12 5 23 .. 1763 1781 .. 1760 1787 .. 0.86 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.3e-05 HHHHHHS-HHHHHHEESS- CS BEN 5 kLlvklFpeetlanssvtG 23 +L++++Fp+e+lan+++ T351121_2 1763 NLVCQVFPREYLANHNCGR 1781 8****************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 464 (0.0284558); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.63 # Mc/sec: 8346.36 // Query: T351121_3 [L=1838] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1838 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.78 # Mc/sec: 6741.29 // Query: T312359_1 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 122 (0.00748191); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.73 # Mc/sec: 5839.23 // Query: T312359_2 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 6660.37 // Query: T312359_3 [L=1490] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1490 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.59 # Mc/sec: 7224.81 // Query: T001875_1 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1244 (0.0762909); expected 326.1 (0.02) Passed bias filter: 330 (0.0202379); expected 326.1 (0.02) Passed Vit filter: 132 (0.00809518); expected 16.3 (0.001) Passed Fwd filter: 57 (0.00349565); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.88u 0.52s 00:00:03.40 Elapsed: 00:00:00.86 # Mc/sec: 6696.34 // Query: T001875_2 [L=2013] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2013 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1081 (0.0662946); expected 326.1 (0.02) Passed bias filter: 289 (0.0177235); expected 326.1 (0.02) Passed Vit filter: 104 (0.00637802); expected 16.3 (0.001) Passed Fwd filter: 45 (0.00275972); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.50u 0.48s 00:00:02.98 Elapsed: 00:00:00.92 # Mc/sec: 6259.62 // Query: T001875_3 [L=2012] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2012 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 883 (0.0541518); expected 326.1 (0.02) Passed bias filter: 221 (0.0135533); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.05u 0.42s 00:00:02.46 Elapsed: 00:00:01.00 # Mc/sec: 5755.99 // Query: T168761_1 [L=3873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-10 40.0 0.0 6.4e-10 39.3 0.0 1.3 1 RNase_H RNase H 3.1e-09 36.4 0.2 5.7e-09 35.6 0.2 1.4 1 Gag_p10 Retroviral GAG p10 protein 0.004 16.3 0.5 0.01 15.0 0.5 1.6 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.3 0.0 1.2e-13 6.4e-10 6 139 .. 1842 1964 .. 1839 1968 .. 0.75 Alignments for each domain: == domain 1 score: 39.3 bits; conditional E-value: 1.2e-13 EEEEEEEECTTTEEEEEEEECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHH CS RNase_H 6 vYtDGsclgnsgeggagavlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknke 102 +tDGs++ g+a+++ +k+ + +++ +++r EL+ vi +L+ + +++ +ni+ DS Yvv+ + + +++ + k t e ++ + T168761_1 1842 YFTDGSSK-----GRAAMLGPKH---TQTIRIS-GLSAQRSELITVILVLElT--ASTPINIVCDSAYVVN-VASRIET---ATIKSTLEP-ELLS-- 1921 69****66.....9****99866...3333333.458**************66..8999************.5554555...566677777.6777.. PP HHHHHHHCHC..SSEEEEEE-SCCSSS....CHHHHHHHHHHH CS RNase_H 103 laellkelak..kkkvqlkhvkgHaGd....pkgNemaDrlAk 139 l+ +l+++++ + ++++h+ H + gN +aD+l+ T168761_1 1922 LFLRLQQAVRshAAPLHISHICSHIQLpgplSLGNDRADKLVC 1964 444444555512456*********877676767*******985 PP >> Gag_p10 Retroviral GAG p10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.6 0.2 1e-12 5.7e-09 27 83 .. 854 909 .. 851 910 .. 0.96 Alignments for each domain: == domain 1 score: 35.6 bits; conditional E-value: 1e-12 Gag_p10 27 kflqtveevcPWFpeeGtldletWkkvgkelkkqateqgekipldvlsiwklirevL 83 k+lq v +PWF + Gt+d+e+W+ +g+ lk a ++g k++ +v+s+w+l++ vL T168761_1 854 KMLQEVIMHNPWFLQTGTFDVENWDTAGEGLK-WAHQKGLKVDPSVFSTWSLVHTVL 909 7899999*************************.********************9997 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.5 1.9e-06 0.01 5 25 .. 2188 2208 .. 2185 2214 .. 0.94 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 1.9e-06 EEE-SSTTS--EEEEEEEEEE CS IN_DBD_C 5 vkwkdllsglWkGPdpvLikg 25 v wk l +g+WkGP+ +L++g T168761_1 2188 VLWKSLEEGQWKGPVDLLTWG 2208 88******************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.48u 0.32s 00:00:01.80 Elapsed: 00:00:00.83 # Mc/sec: 13349.39 // Query: T168761_2 [L=3873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-35 121.9 0.0 4.3e-35 121.3 0.0 1.2 1 Gag_p24 gag gene protein p24 (core nucleocapsid protein) 1.2e-08 35.0 4.8 2e-08 34.2 4.8 1.3 1 GP41 Retroviral envelope protein 0.00049 20.0 0.7 0.0012 18.8 0.7 1.6 1 HERV-K_REC Rec (regulator of expression encoded by corf) of ------ inclusion threshold ------ 0.025 14.0 0.0 0.042 13.2 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.051 13.4 0.3 0.091 12.6 0.3 1.4 1 G-patch G-patch domain Domain annotation for each model (and alignments): >> Gag_p24 gag gene protein p24 (core nucleocapsid protein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 121.3 0.0 1.3e-38 4.3e-35 1 199 [. 1019 1220 .. 1019 1226 .. 0.90 Alignments for each domain: == domain 1 score: 121.3 bits; conditional E-value: 1.3e-38 Gag_p24 1 lktLkalkkaveqygpsspeviqlidalaeqa..lpkdlekllarvgssqlaaqlwkeeleee..ekdrvnraagpikissdmllgtgqllaeqsqlm 94 +k Lk+lk v + g +sp+++ l ++l + +p d+++l++ ++s a+ + ee + +r+n+a g ++i+ dmllg g++ + ++q+ T168761_2 1019 FKLLKELKASVVNNGVQSPFTLGLPESLFGAMrlIPFDVKHLAQI-CLSASAYLTRNLNWEEMcaDQARQNHATGHRDITEDMLLGNGPYSDLEHQMA 1115 689************************97777779***9998875.5545555444444444466669999999************************ PP Gag_p24 95 qnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkeladekakdvlvkqLayeNANpeCqkllkplrknstledmlraC 192 + +++q ++ a++ ip++g++ +s+++i QG +Ep f +Rl++a++k+++ a ++ + +La+eNAN +C+ +l p++ + +l+++lra T168761_2 1116 LPDAAYKQCALAAKCAWATIPEEGVPVQSFLHITQGLQEPCAHFLERLQEAVKKQIPHTMAAEMQTVTLAFENANVDCKCALAPVKYTEELGNFLRAS 1213 **99********************************************************************************************** PP Gag_p24 193 qgvggav 199 q+vg+ T168761_2 1214 QDVGTEL 1220 ****964 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 4.8 6.2e-12 2e-08 3 84 .. 2803 2884 .. 2801 2888 .. 0.95 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 6.2e-12 XXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX.. CS GP41 3 avslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase 84 +++l ++q+ + v++ + ++ + i+ +l+ v l+ +vl lG++ +sl+ q++l Ch n iCv ++ yn+se T168761_2 2803 SITLHSSIQTVQYVQNWMHTANQVWLLHNRINTELQTEVAMLKSIVLWLGEQAQSLQLQQQLCCHLNATHICVNNLEYNQSE 2884 788999***********99999999999*****************************************************9 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.7 3.6e-07 0.0012 24 62 .. 2270 2308 .. 2253 2309 .. 0.88 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 3.6e-07 HERV-K_REC 24 tkkaepptwaqlkkltqlatkylentkvtqtpesmllaa 62 t + p tw qlkk q a k le ++tp++m+la T168761_2 2270 TTTSTPITWGQLKKTMQEAEKLLERQGQAKTPDAMFLAC 2308 667889*******************************95 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 1.3e-05 0.042 130 172 .. 1146 1186 .. 1116 1213 .. 0.74 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.3e-05 Gag_p30 130 kevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsf 172 +++qg +e+ a flerl+ea ++ p+ ++ q v+l+f T168761_2 1146 LHITQGLQEPCAHFLERLQEAVKKQIPHTMAAEMQT--VTLAF 1186 4699************************99888775..55555 PP >> G-patch G-patch domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.3 2.8e-05 0.091 11 44 .. 1247 1280 .. 1246 1281 .. 0.97 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 2.8e-05 G-patch 11 kmGWkeGqGLGkkeqGivePieakikkdraGlGa 44 kmG+ +GL k+ qG+ +Pi+ ++dr+GlG+ T168761_2 1247 KMGYQSRKGLEKSLQGNPDPISISGQTDRKGLGV 1280 9********************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.37u 0.39s 00:00:01.76 Elapsed: 00:00:00.74 # Mc/sec: 14972.97 // Query: T168761_3 [L=3873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-18 65.3 0.1 5.6e-18 64.3 0.1 1.6 1 RVT_thumb Reverse transcriptase thumb domain 1.3e-08 34.5 0.0 2.1e-08 33.8 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polyme 0.00039 20.2 0.4 0.0012 18.6 0.4 1.9 1 Integrase_Zn Integrase Zinc binding domain 0.0055 16.8 0.1 0.068 13.2 0.1 2.2 2 rve Integrase core domain Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.3 0.1 1.4e-21 5.6e-18 1 56 [. 1625 1680 .. 1625 1687 .. 0.93 Alignments for each domain: == domain 1 score: 64.3 bits; conditional E-value: 1.4e-21 ES-B----SSSEBHHHHHHHHHHHHHHTTSTT---HHHHHT...TTSSSSTTSBE- CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWirpylgittaeLkpLFniLrGdsdltsprq 56 pqk+ l++d+l++LNDfQ+LlgdI W++ +lgi t+ Lk+L+++L+Gds+l+ p T168761_3 1625 PQKVVLHKDRLQILNDFQQLLGDIHWLCAMLGIATYRLKHLYQTLQGDSSLDFPAA 1680 69*************************************************97765 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 0.0 5.1e-12 2.1e-08 143 221 .. 1545 1617 .. 1542 1618 .. 0.91 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 5.1e-12 HHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 143 fnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 ++ f+ + l+e + ++ ++++++DDil+++ + + l++l ++ ++ l +++lki peK++++ ++++yLG + T168761_3 1545 CQHFVGQTLKETLNMFPTAHIIHFMDDILLATPTDQILHQLFRERKQALTKWNLKIGPEKVQAT------SPYHYLGTI 1617 5667777777888878999*********************************************......9******76 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.4 3e-07 0.0012 14 37 .. 1982 2005 .. 1979 2006 .. 0.95 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 3e-07 Integrase_Zn 14 aLrkkFkitreqAreIVqsCptCq 37 aL+++F+++ +qAr q+CptCq T168761_3 1982 ALTRMFHLPHSQARTMAQACPTCQ 2005 9**********************8 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.1 1.7e-05 0.068 3 32 .. 2022 2049 .. 2021 2049 .. 0.87 2 ? 0.7 0.0 0.13 5.1e+02 60 79 .. 2076 2093 .. 2070 2093 .. 0.77 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 1.7e-05 rve 3 rpgelwqvDvtvgripdgggkayllvvidd 32 +p+e+wq+Dvt+++ +++ +y++v id+ T168761_3 2022 APNEIWQMDVTHIAAFGK--LSYVHVTIDT 2049 69************6655..5*******95 PP == domain 2 score: 0.7 bits; conditional E-value: 0.13 rve 60 arfggvepervlsDngseyt 79 a+ g p+ + +Dng++yt T168761_3 2076 AHMGI--PKQLKTDNGPAYT 2093 33444..9**********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.44u 0.31s 00:00:01.75 Elapsed: 00:00:00.76 # Mc/sec: 14578.94 // Query: T226936_1 [L=9501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.56u 0.45s 00:00:03.01 Elapsed: 00:00:00.86 # Mc/sec: 31605.52 // Query: T226936_2 [L=9500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.45u 0.51s 00:00:02.96 Elapsed: 00:00:00.90 # Mc/sec: 30197.65 // Query: T226936_3 [L=9500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (9500 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.83u 0.46s 00:00:03.29 Elapsed: 00:00:01.05 # Mc/sec: 25883.70 // Query: T203338_1 [L=1532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.57 # Mc/sec: 7556.54 // Query: T203338_2 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-104 348.2 15.3 8e-104 347.3 15.3 1.4 1 Transposase_22 L1 transposable element 1.7e-33 115.9 0.2 3.2e-33 115.0 0.2 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly ------ inclusion threshold ------ 0.018 14.9 4.1 0.61 9.9 0.8 2.4 2 DUF1664 Protein of unknown function (DUF1664) 0.027 14.2 2.0 0.059 13.1 2.0 1.5 1 Sec34 Sec34-like family 0.049 14.0 5.6 0.12 12.7 5.6 1.6 1 Spectrin Spectrin repeat 0.078 13.1 13.1 0.024 14.8 8.5 2.2 2 zf-C4H2 Zinc finger-containing protein 0.17 12.0 4.4 0.54 10.4 4.4 1.9 1 KLRAQ Predicted coiled-coil domain-containing prote 0.22 9.3 2.5 0.39 8.5 2.5 1.3 1 Prominin Prominin 0.55 10.3 6.3 0.21 11.6 2.4 2.4 2 Med2 Mediator complex subunit 2 0.67 10.4 9.6 0.1 13.0 5.2 1.9 2 Syntaxin-6_N Syntaxin 6, N-terminal Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 347.3 15.3 4.9e-107 8e-104 32 307 .. 684 928 .. 670 933 .. 0.96 Alignments for each domain: == domain 1 score: 347.3 bits; conditional E-value: 4.9e-107 XX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX..................XXXXXXXXXXXXXX CS Transposase_22 32 atteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee......ntekqlkiikekqentskqvmemnkellelktkvdelkk 118 at e++++++df+elr+e++ + ++y+el e+i++k+ke+e ++k++ee ntek+lk el+elktk++el++ T203338_2 684 AT--EQSWMENDFDELREEGF-R*SNYSELWEDIQTKGKEVEkFEKNLEEcitritNTEKCLK------------------ELMELKTKARELRE 757 44..9***************9.7779************************8888888888888..................9************* PP XXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHH CS Transposase_22 119 eqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkkleniln 213 e++ sl+sr+d+lee vsa+ede++e++re+k+rekr+k++eqslq+i+d+vkrPnlrliGv+es+ e++ klen+l+ T203338_2 758 ECR------------------SLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGSKLENTLQ 834 ***..................************************************************************************** PP HHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHH.HHHHHHHHHHHHHHH CS Transposase_22 214 kiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetl.karrewtdviqilke 307 +ii+enfPnl+++anv+iqei+rtP+r++s+ra++rhiivr+tkv++k+k+l+a+rekGr+tlkGkPirltadlsaetl rrew+++++ilk T203338_2 835 DIIQENFPNLARQANVQIQEIRRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRITLKGKPIRLTADLSAETL*A-RREWGPIFNILKR 928 *****************************************************************************9555.9**********95 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 115.0 0.2 1.9e-36 3.2e-33 6 158 .. 1148 1304 .. 1139 1314 .. 0.95 Alignments for each domain: == domain 1 score: 115.0 bits; conditional E-value: 1.9e-36 .S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS RVT_1 6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 ++++Rpisl+++d k+lnk++a++++++++kl++++q+gf pg + + ++ +++++++++k k+++++++D +kaFd+++ ++ l++l++++++ T203338_2 1148 KENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIrksiNVIQHINRAKDKNHMIVSVDAEKAFDKIQQPFMLKTLNKLGIDG 1245 369**************************************************999****9************************************* PP ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 100 klinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 + ++i+++ ++++++ +ng++ e ++ k+g++qG++l Pllfn++ + l r +r++ T203338_2 1246 TYFKIIRAISDKPTANIILNGQKLEAFPLKTGTRQGCPLLPLLFNIVSEVLARAIRQEK 1304 **********************99********************************975 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.8 0.00038 0.61 55 120 .. 719 783 .. 707 787 .. 0.56 2 ? 5.5 0.1 0.0087 14 55 113 .. 978 1035 .. 974 1049 .. 0.86 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00038 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLeskleei 120 +++++ ++L++ i r+ ++ +++ + e+k + e+re+ +++++ ++++e v+ +e ++e+ T203338_2 719 KEVEKFEKNLEECITRITNT-EKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEM 783 45555555555555555443.444444445555566666666666666666666666666666655 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0087 DUF1664 55 eslaatkrhLsqridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegL 113 +++++ + + +ri+++d+ l ++ k k++++++++d +i +d +++++++++ T203338_2 978 KKINESRSWFFERINKIDRPLARLIKK-KREKNQIDTIKNDKGDITTDPTEIQTTIREY 1035 6789999999***********999875.55699********************999875 PP >> Sec34 Sec34-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 2.0 3.6e-05 0.059 3 59 .. 722 778 .. 720 788 .. 0.88 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 3.6e-05 Sec34 3 dqLeskeeecdelleqtdealeqleeleekfksvsektsslheaceqlleeqkrlee 59 +++e++ eec + +++t+++l++l el++k ++ e+ +sl+++c+ql e + +e+ T203338_2 722 EKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMED 778 78999*******************************************887666665 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 5.6 7.6e-05 0.12 2 94 .. 720 810 .. 719 813 .. 0.94 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 7.6e-05 HHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 + ++f+++++e+ i+++e+ l ++l + +++++l ++++ l+ ++ +e+v a ++ +++ eg++ +++i+ + l+e W+ +k+ T203338_2 720 EVEKFEKNLEECITRITNTEKCL--KELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 810 679********************..7777899999*****************************************************99875 PP >> zf-C4H2 Zinc finger-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 8.5 1.5e-05 0.024 4 159 .. 713 868 .. 711 886 .. 0.77 2 ? -0.5 0.1 0.71 1.2e+03 84 118 .. 1020 1054 .. 975 1122 .. 0.51 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.5e-05 zf-C4H2 4 eirektleleklknklakevealekeekcleey...kkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeeinelr 100 +i++k +e+ek +++l + + ++++ekcl+e k + +L++E ++ ++++ ++a+E+ ++e + e + + +++k+ + ++++ + + + T203338_2 713 DIQTKGKEVEKFEKNLEECITRITNTEKCLKELmelKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRP- 811 7999999*********************99876111567789999999999999******************************999999999888654. PP zf-C4H2 101 selglekledleeeeeellkeeifekkesstapapplpptsllsklsqapsapstatas 159 +l l +++ + e+++ l++++ + +++ p+ + + + ++++++p++ s+ a+ T203338_2 812 -NLRLIGVPESDGENGSKLENTL-QDIIQENFPNLARQANVQIQEIRRTPQRYSSRRAT 868 .4666666777777777777766.54444455554445556666677777765544444 PP == domain 2 score: -0.5 bits; conditional E-value: 0.71 zf-C4H2 84 klyeeykklkeeinelrselglekledleeeeeel 118 ++++ ++++++i e ++l +kle+lee ++ l T203338_2 1020 DITTDPTEIQTTIREYYKHLYTNKLENLEEMDKFL 1054 22233333333333333333333333333333222 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 4.4 0.00033 0.54 32 89 .. 742 798 .. 709 806 .. 0.75 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00033 KLRAQ 32 keelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 +el e +++ r ++E sL r +qLe v+++ +e++e +++ +k ++k ++++ T203338_2 742 LKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKRE-GKFREKRIKRNE 798 3445555566788889************************98755.665533333332 PP >> Prominin Prominin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 2.5 0.00024 0.39 229 352 .. 727 858 .. 706 877 .. 0.74 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00024 Prominin 229 tlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqteeCskilssleiekldtskcl.........dqlp 318 +le+ + +++ e+ l++l e k++ +++++ +Lr+ +qL++ ++++ +++n++ + + + e+ k ++++ +e++d+ k + + T203338_2 727 NLEEC-ITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDEMNEMKREgKFR-EKRIKRNEQSLQEIWDYVKRPnlrligvpeSDGE 824 44444.55566677778888888888888888888888888888888888888888888886666.4444444444455788776655444333355558 PP Prominin 319 nvdevlealeevletnlssivkeglarlneipek 352 n +++ ++l++++++n+ +++++++ +++ei+++ T203338_2 825 NGSKLENTLQDIIQENFPNLARQANVQIQEIRRT 858 899999*************************987 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 2.4 0.00013 0.21 48 95 .. 718 765 .. 708 771 .. 0.86 2 ? -3.3 0.0 5.7 9.2e+03 4 15 .. 827 838 .. 825 853 .. 0.83 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00013 Med2 48 kekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqr 95 ++++kF++ L + ++++++++++++l+e k++ +e++e ++ r r T203338_2 718 GKEVEKFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSR 765 5789*******************************9999976666655 PP == domain 2 score: -3.3 bits; conditional E-value: 5.7 Med2 4 nkLtqclddiLk 15 +kL+++l+di++ T203338_2 827 SKLENTLQDIIQ 838 699999999987 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 5.2 6.4e-05 0.1 14 95 .. 721 808 .. 707 810 .. 0.66 2 ? -3.8 0.1 10 1.6e+04 46 65 .. 1014 1033 .. 992 1052 .. 0.55 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 6.4e-05 Syntaxin-6_N 14 lnkleslyrrw.eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafveevreev 95 ++k e+ +++ +++ ++++ ++ el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ ++e+ + v T203338_2 721 VEKFEKNLEECiTRITNTEKClKELMELKTKARELREECRSLRSRCDQLEEWVSAMEDemneMKREGKFREKRIKRNEQSLQEIWDYV 808 33333333333333333333345899***************************99987332222447778888888888887776655 PP == domain 2 score: -3.8 bits; conditional E-value: 10 Syntaxin-6_N 46 LrkalrsiewdledLeetvr 65 +++ ++i +d +++ t+r T203338_2 1014 IKNDKGDITTDPTEIQTTIR 1033 33333344444444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1015 (0.062247); expected 326.1 (0.02) Passed bias filter: 411 (0.0252054); expected 326.1 (0.02) Passed Vit filter: 91 (0.00558077); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:00.66 # Mc/sec: 6636.26 // Query: T203338_3 [L=1531] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1531 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 264 (0.0161904); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.61 # Mc/sec: 7180.21 // Query: T022824_1 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 333 (0.0204219); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.62 # Mc/sec: 5324.84 // Query: T022824_2 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 952 (0.0583834); expected 326.1 (0.02) Passed bias filter: 552 (0.0338526); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.70 # Mc/sec: 4712.20 // Query: T022824_3 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 790 (0.0484484); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 5153.96 // Query: T336576_1 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.65 # Mc/sec: 6012.14 // Query: T336576_2 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 219 (0.0134306); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 5427.63 // Query: T336576_3 [L=1366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1366 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 6855.95 // Query: T316842_1 [L=3824] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3824 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 906 (0.0555624); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.92u 0.45s 00:00:02.37 Elapsed: 00:00:00.91 # Mc/sec: 12021.77 // Query: T316842_2 [L=3823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1143 (0.0700969); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.18u 0.48s 00:00:02.66 Elapsed: 00:00:00.92 # Mc/sec: 11887.99 // Query: T316842_3 [L=3823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 943 (0.0578315); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.97u 0.39s 00:00:02.36 Elapsed: 00:00:00.89 # Mc/sec: 12288.71 // Query: T216166_1 [L=2760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.69 # Mc/sec: 11443.32 // Query: T216166_2 [L=2760] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2760 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 151 (0.00926039); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.61 # Mc/sec: 12944.08 // Query: T216166_3 [L=2759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.56 # Mc/sec: 14094.70 // Query: T068778_1 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.57 # Mc/sec: 11778.73 // Query: T068778_2 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 660 (0.0404759); expected 326.1 (0.02) Passed bias filter: 400 (0.0245308); expected 326.1 (0.02) Passed Vit filter: 84 (0.00515148); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 11018.81 // Query: T068778_3 [L=2388] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00082 19.0 9.2 0.0013 18.4 9.2 1.2 1 Coilin_N Coilin N-terminus ------ inclusion threshold ------ 0.066 13.2 3.6 0.14 12.1 3.6 1.5 1 Eapp_C E2F-associated phosphoprotein 0.1 12.5 27.8 0.19 11.6 27.8 1.3 1 DUF2011 Fungal protein of unknown function (DUF2011) 0.15 12.0 1.3 0.23 11.4 1.3 1.2 1 DDHD DDHD domain 0.23 11.1 15.3 0.35 10.5 15.3 1.1 1 RR_TM4-6 Ryanodine Receptor TM 4-6 0.82 8.3 20.0 1.1 7.9 20.0 1.1 1 NARP1 NMDA receptor-regulated protein 1 2 6.6 9.8 3 6.0 9.8 1.1 1 Rrn6 RNA polymerase I-specific transcription-initia 3 7.1 16.5 5.1 6.4 16.5 1.2 1 DUF1510 Protein of unknown function (DUF1510) 3.2 7.0 8.0 5.3 6.3 8.0 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 3.4 6.7 12.5 5.2 6.1 12.5 1.1 1 CCDC71L Coiled-coil domain-containing protein 71L 5.9 5.9 10.0 8.9 5.3 10.0 1.1 1 FLO_LFY Floricaula / Leafy protein 6 5.4 14.1 8.7 4.9 14.1 1.1 1 Tim54 Inner membrane protein import complex subunit 6.1 6.4 10.7 9.2 5.8 10.7 1.1 1 AAA_11 AAA domain 7.7 5.8 17.8 13 5.1 17.8 1.2 1 Sec62 Translocation protein Sec62 9.8 6.1 19.0 21 5.0 17.3 1.9 2 DUF2058 Uncharacterized protein conserved in bacteria Domain annotation for each model (and alignments): >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 9.2 1.2e-06 0.0013 82 138 .. 616 672 .. 541 674 .. 0.68 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.2e-06 Coilin_N 82 tkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 +k++++++e+e+++ + k+ + + +kk+kkr++ ++e++e+++++++k+k ++kkk T068778_3 616 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKK 672 344444444444444444445555555555555555555555555555555555554 PP >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 3.6 0.00013 0.14 76 117 .. 623 679 .. 613 758 .. 0.45 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00013 Eapp_C 76 ykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeee...............e 117 ++++e+e++++kk+k+++k++++++++++++eeeeee+++e + T068778_3 623 KEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEkekgrrkkkkqlvrlR 679 333333332222222222222222222222222222222211223344444555550 PP >> DUF2011 Fungal protein of unknown function (DUF2011) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 27.8 0.00017 0.19 70 135 .. 613 674 .. 569 680 .. 0.56 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00017 DUF2011 70 kkankeakaaakieaeakkekekkkkrkrpGKKrRialrkreaakkekeeaekkekekrkrknreK 135 kk++k +++ k e ++++e++++kkrkr KK+R ++r+r+++++e+ee+ kkekek rk++++ T068778_3 613 KKKEK--EKEMKKE-KEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEK-KKEKEKGRRKKKKQ 674 33333..2222222.223334456777777777777777666666666654.33444433333333 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 1.3 0.00021 0.23 127 189 .. 613 672 .. 542 702 .. 0.47 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00021 DDHD 127 geeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 +++e++k+ +++k++e+ e++++k++++++++++++++++ee++e ++ke e+ ++++k T068778_3 613 KKKEKEKEMKKEKEEEER----RERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKKK 672 222222222222222211....111111222222222222222222222222222233222222 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 15.3 0.00033 0.35 84 154 .. 610 674 .. 596 696 .. 0.52 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00033 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkke 154 p+lkkk +e +e +ke+eee++ e+ +k+++++++k++k+++ ++k+e+eeee++k+k+k +++kkk+ T068778_3 610 PDLKKKEKE---KEMKKEKEEEERRER-KKRKRRRKKKRKKRRR--RKKEEEEEEEKKKEKEKGRRKKKKQ 674 455666554...344444444444444.4444444444443333..2222333333333333333333333 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 20.0 0.001 1.1 386 449 .. 612 673 .. 590 682 .. 0.49 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.001 HHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......----- CS NARP1 386 ledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked 449 l+ k+k+ke +ke++++++ + ++rk+ rkk++k++++++kee+e+++k+kek+ + ++kk++ T068778_3 612 LKKKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKE--KGRRKKKK 673 333333333333333333444444444444555554445554444444433333..22222222 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.8 0.0028 3 745 790 .. 624 666 .. 608 716 .. 0.53 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0028 Rrn6 745 sleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsk 790 + e+ee+r+r++rk++++++rk++ r+r+++++++e++++++ k T068778_3 624 EKEEEERRERKKRKRRRKKKRKKR---RRRKKEEEEEEEKKKEKEK 666 111222222222222222222222...2222222222222222222 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 16.5 0.0046 5.1 54 113 .. 614 673 .. 604 691 .. 0.39 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0046 DUF1510 54 seeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevt 113 ++e++k+ kke++ee+ +e k+ + ++++ k+ ++++ee+eek+ke+++ ++++ T068778_3 614 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKK 673 222222223333333333333333333333333333333333333333333333333333 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 8.0 0.0048 5.3 19 74 .. 615 671 .. 589 681 .. 0.40 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0048 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee..kldk 74 e++++ ++ekee+e++e+++ ++ +++++ ++k+ee+e+ee +++e+e + +k T068778_3 615 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEE-KKKEKEkgRRKK 671 222222222222222222222222222222222222222222222.222222122222 PP >> CCDC71L Coiled-coil domain-containing protein 71L # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 12.5 0.0047 5.2 291 349 .. 616 676 .. 577 704 .. 0.58 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0047 CCDC71L 291 akakkikakesvqarterkkqksssetvGqKrkr.aeeakelpakkkar.lvpqsekselg 349 k k++k+ + +++r erkk+k+++++ +Kr+r +e++e +kkk++ ++ +++k++l+ T068778_3 616 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRrKKEEEEEEEKKKEKeKGRRKKKKQLV 676 3455555555555555555555555555444433133333333333333033344444433 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.0 0.0082 8.9 163 213 .. 621 671 .. 593 688 .. 0.50 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0082 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS FLO_LFY 163 GGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag 213 + ++ee +rk++k+rr+kk++++++ +++ee+eee ++++e+ + + T068778_3 621 MKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKK 671 333444444445555555544444444444444333333333333322222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 14.1 0.008 8.7 188 249 .. 607 671 .. 603 684 .. 0.38 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.008 Tim54 188 GPldapeepeeeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeekeeeeeeeekek.kkkv 249 G l +++e+e++ ++e+eeee++e++++++ ++++++++++k+ee+eeee+++ekek ++k+ T068778_3 607 GSLPDLKKKEKEKEMKKEKEEEERRERKKRKRrrKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKK 671 44444444444443333333333333333333112222222222222222222333333223333 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 10.7 0.0084 9.2 133 195 .. 615 677 .. 600 703 .. 0.64 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0084 AAA_11 133 eleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleeevld 195 ++++ + + +++eee +++k++k ++k+k+k++++r+k ++e +e +ke e+ +++ ++++++ T068778_3 615 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKKQLVR 677 222222222233333334566666666666666666666666666777777776666666654 PP >> Sec62 Translocation protein Sec62 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 17.8 0.012 13 21 100 .. 614 690 .. 608 704 .. 0.40 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.012 Sec62 21 kkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYvW 100 kk+++k+ +k+ke++++++ +k +++ kk++++ r +k++e+e+++kk+ +k+k ++kkk +l ++ +f + e + W T068778_3 614 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKK-EKEKGRRKKKKQLVRLRDLTF--ALENWSW 690 2222222222222222333333333333333333444443333333332.333334444444444444444..4455555 PP >> DUF2058 Uncharacterized protein conserved in bacteria (DUF2058) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.0 0.67 7.3e+02 108 141 .. 464 497 .. 462 507 .. 0.91 2 ? 5.0 17.3 0.019 21 13 84 .. 614 681 .. 605 705 .. 0.49 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.67 DUF2058 108 eklqkqLvaGrlaivrleeeyelvprevaekiae 141 ++ q+qL +G l + ++ ++y vp+ v ++ia+ T068778_3 464 TQAQEQLFKGILFLTSCLTHYLQVPKFVIQRIAN 497 57899**************************986 PP == domain 2 score: 5.0 bits; conditional E-value: 0.019 DUF2058 13 dkkkakkakkekrkqkkqkkkkkaedeakeaaeeakaekaerdr.elneqrkeeaekkalkaqirqlieenrl 84 +k+k k++kkek++++++++kk +k++ +++++++++r + e +e++k+++++k ++++ +ql++ + l T068778_3 614 KKEKEKEMKKEKEEEERRERKK-----RKRRRKKKRKKRRRRKKeEEEEEEKKKEKEKGRRKKKKQLVRLRDL 681 4444444444444444444442.....2222222222222222202222233333444455666777766655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2388 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1786 (0.10953); expected 326.1 (0.02) Passed bias filter: 817 (0.0501043); expected 326.1 (0.02) Passed Vit filter: 356 (0.0218325); expected 16.3 (0.001) Passed Fwd filter: 55 (0.00337299); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 2.39u 0.41s 00:00:02.80 Elapsed: 00:00:00.71 # Mc/sec: 9622.06 // Query: T120032_1 [L=1177] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1177 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.53 # Mc/sec: 6353.20 // Query: T120032_2 [L=1176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 217 (0.013308); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.53 # Mc/sec: 6347.80 // Query: T120032_3 [L=1176] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1 9.6 3.2 2.7 8.2 3.2 1.6 1 Comm Commissureless Domain annotation for each model (and alignments): >> Comm Commissureless # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 3.2 0.00017 2.7 18 44 .. 471 503 .. 468 523 .. 0.75 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00017 Comm 18 LlilslvFclcsCflyrkf......rtWkkkkt 44 L +lsl c+csCf+ f W++++ T120032_3 471 LTVLSLCCCCCSCFMRMDFflslqrLFWNQTRM 503 789************999988887556775544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1176 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 6347.80 // Query: T370529_1 [L=2318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 437 (0.0268); expected 326.1 (0.02) Passed bias filter: 185 (0.0113455); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 11841.79 // Query: T370529_2 [L=2318] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2318 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 272 (0.016681); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 11841.79 // Query: T370529_3 [L=2317] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2317 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 275 (0.016865); expected 326.1 (0.02) Passed bias filter: 53 (0.00325034); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.57 # Mc/sec: 11428.52 // Query: T377476_1 [L=5615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.60 # Mc/sec: 26772.60 // Query: T377476_2 [L=5615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-159 528.4 22.3 9.5e-159 528.0 22.3 1.2 1 Transposase_22 L1 transposable element 1.4e-09 38.0 0.0 2.3e-09 37.4 0.0 1.3 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 9.4e-09 35.0 1.1 2e-08 34.0 1.1 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase 0.0041 16.4 7.8 0.0075 15.5 7.8 1.3 1 GAS Growth-arrest specific micro-tubule binding ------ inclusion threshold ------ 0.051 13.7 7.7 0.11 12.6 7.7 1.5 1 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.11 12.5 10.0 0.27 11.3 10.0 1.6 1 ATG16 Autophagy protein 16 (ATG16) 0.12 11.1 14.3 0.18 10.5 14.3 1.1 1 DUF812 Protein of unknown function (DUF812) 0.25 11.5 8.6 0.34 11.0 7.1 2.0 2 KLRAQ Predicted coiled-coil domain-containing prot 0.28 11.6 9.7 0.2 12.1 6.4 2.2 2 Syntaxin-6_N Syntaxin 6, N-terminal 0.33 10.9 9.0 0.63 10.0 9.0 1.4 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.36 10.5 9.5 0.65 9.7 9.5 1.3 1 Mnd1 Mnd1 family 0.37 10.0 12.5 0.6 9.3 12.5 1.2 1 APG6 Autophagy protein Apg6 0.67 9.6 11.7 1.1 8.8 11.7 1.3 1 IncA IncA protein 1.1 9.0 9.5 2 8.1 9.5 1.3 1 DUF724 Protein of unknown function (DUF724) 2 8.3 14.7 3.9 7.4 14.7 1.3 1 CENP-F_leu_zip Leucine-rich repeats of kinetochore protein 3 7.5 12.6 11 5.6 12.6 1.9 1 TBPIP Tat binding protein 1(TBP-1)-interacting pro Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 528.0 22.3 9.3e-162 9.5e-159 1 368 [] 5003 5338 .. 5003 5338 .. 0.98 Alignments for each domain: == domain 1 score: 528.0 bits; conditional E-value: 9.3e-162 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikkdfykelkelieskakele.alkekee......ntekqlk 86 +Gkk+ rk++nsk +++s+P+ke+sssPat e+++ ++df++lr+e++++++y+el+e+i++k+ke+e ++k++ee ntek+lk T377476_2 5003 MGKKQ---SRKTGNSKNQSASPPPKERSSSPAT--EQSWTENDFDKLREEGFRRSNYSELREDIQTKGKEVEnFEKNLEEcitrktNTEKCLK 5090 79999...9************************..*************************************9******97777777777777 PP ..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 87 iikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqs 179 el+elktk++el++e++ sl+sr+d+leervsa+ede++e++re+k+rekr+k++eqs T377476_2 5091 ------------------ELMELKTKARELREECR------------------SLRSRCDQLEERVSAMEDEMNEMKREGKFREKRIKRNEQS 5147 ..................9****************..................**************************************** PP HHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-T.SSSS--EEEEEESSHHHHHHHHHHHHHH CS Transposase_22 180 lqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqds.krassrhiivrttkvlnkdkilkavrek 271 lq+i+d+vkrPnlrliGv+es+ e+++klen+l++ii+enfPnl+++anv+iqei+rtP+r+ s +ra++rhiivr+tkv++k+k+l+a+rek T377476_2 5148 LQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRF-S*RRATPRHIIVRFTKVEMKEKMLRAAREK 5239 *************************************************************8.7779************************** PP S-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXX CS Transposase_22 272 GrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryq 362 GrvtlkGkPirltadlsaet++arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ryq T377476_2 5240 GRVTLKGKPIRLTADLSAETIQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalNMERNNRYQ 5332 ********************************************************************************************* PP XXXXXX CS Transposase_22 363 aleqar 368 +l++++ T377476_2 5333 PLQNHA 5338 ****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.4 0.0 2.3e-12 2.3e-09 1 113 [] 5373 5592 .. 5373 5592 .. 0.86 Alignments for each domain: == domain 1 score: 37.4 bits; conditional E-value: 2.3e-12 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ + + + T377476_2 5373 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIkgWRKIYQANGKQQKAGVAILVSDKTDFKptkikrdkeghyimv 5462 699****....7778899*******************9998887776666886667788889999*********9977778889********** PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 +++GDfN+ T377476_2 5463 kgsiq*eeltilniyapntgaprfikqvlsdlqrdleshTLIMGDFNTplstldrstrqkvnkdtqelnsalhqadlidiyrtvhpksteytff 5556 ***********************9999999999999999999******9999999999999999999999999999999999999999999999 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+il sk+l + + + + SDH T377476_2 5557 saphhtysKIDHILGSKALLSKCKRTEIITNYlSDH 5592 9999999999******95554444444433336888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 1.1 2e-11 2e-08 2 118 .. 5472 5595 .. 5471 5596 .. 0.81 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 2e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l s +++i+GDfN + + +++++ ++ +eL + l++ +l + ++k++ tf s + T377476_2 5472 TILNIYAPNTG-APRFIKQVLSDLQRDLES-HTLIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQADLIDIyrtVHPKSTeYTFFSAPHh 5561 7999***9999.666666666666666665.89**************9888879***************99666664444444777666665 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD +l s+ l+ + ++ ++++SDH++i T377476_2 5562 tYSKIDHILGSKALLSKckRTEIITNYLSDHSAI 5595 68***************98666779******998 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 7.8 7.3e-06 0.0075 56 127 .. 5054 5132 .. 5042 5184 .. 0.73 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 7.3e-06 GAS 56 nkrltepLkkaekeveeLrkqlk.......nyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerdelyk 127 ++l+e +++ keve+ +k+l+ n ek ++l++lk++ +el +e ++l+ ++l++r++++e+e +e+++ T377476_2 5054 YSELREDIQTKGKEVENFEKNLEecitrktNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKR 5132 4566666666666666666666511111115666777777777777777777777777777777777777777777765 PP >> Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 7.7 0.00011 0.11 9 100 .. 5039 5130 .. 5035 5133 .. 0.96 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00011 H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS Seryl_tRNA_N 9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100 +++++++e +R +++++ +++ ++ ++ ++ lee+ +++ + k +++++ k +a el++e ++l + ++le++++++e+e++++ T377476_2 5039 NDFDKLREEGFRRSNYSELREDIQTKGKEVENFEKNLEECITRKTNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEM 5130 7999******9******************************************************************************986 PP >> ATG16 Autophagy protein 16 (ATG16) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 10.0 0.00026 0.27 69 135 .. 5039 5148 .. 4980 5163 .. 0.50 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00026 ATG16 69 sq...........................................snskqsakiasleqklaqlreelaelyksrgelaqrllelneelqkleeklke 123 ++ +++k +++ +l++k +lree l+ ++ +l++r+ ++++e+ + +++ k T377476_2 5039 NDfdklreegfrrsnyselrediqtkgkevenfeknleecitrktNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKF 5136 22555555555666555555554433333333333333333333333444445555555555555555555555555555555555555555555555 PP ATG16 124 deerlaeleaer 135 +e+r+++ e+ T377476_2 5137 REKRIKRNEQSL 5148 555555555444 PP >> DUF812 Protein of unknown function (DUF812) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 14.3 0.00018 0.18 242 393 .. 4991 5150 .. 4973 5182 .. 0.64 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00018 DUF812 242 eykkrkkeklqkrlaeqlrkaalsseeaeksaskskkdlaellsefsekntseselskgsrfthaeklqfake...........elakkkteteeelr 328 +++ k +k+ k ++q rk s++++++ + k++++ +++ ++++ ++ +++ f++++ ++ ++ e++ ++ t++ + T377476_2 4991 HHQRPKVDKTTKMGKKQSRKTGNSKNQSASPPPKERSSSPATEQSW---TENDFDKLREEGFRRSNYSELREDiqtkgkevenfEKNLEECITRKTNT 5085 3333344444444444444444444444433333333333334444...3444445566666666666665553332322211111134444455555 PP DUF812 329 kkreeeleelqekleeleskieeleeelkklessikqieeeleeekeeneelekelklkkktlel 393 +k +el el++k el+++ +l++ ++le +++ +e+e++e+k+e + +ek +k +++ l+ T377476_2 5086 EKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQE 5150 555599************************************************99999998875 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.0 9.2 9.4e+03 51 71 .. 808 828 .. 806 832 .. 0.88 2 ? 11.0 7.1 0.00033 0.34 26 89 .. 5083 5145 .. 5052 5153 .. 0.74 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 9.2 KLRAQ 51 sLtFrNqqLekrvellqeele 71 L++rN ++ ++++q++++ T377476_2 808 YLGYRNLSITTVITVFQNQVD 828 599**************9987 PP == domain 2 score: 11.0 bits; conditional E-value: 0.00033 KLRAQ 26 akeaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 +++++ +el e +++ r ++E sL r +qLe rv+++ +e++e +++ +k ++k ++++ T377476_2 5083 TNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKRE-GKFREKRIKRNE 5145 4444555556666677788999************************98755.665533333332 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 6.4 0.0002 0.2 3 95 .. 5054 5155 .. 5053 5157 .. 0.75 2 ? -0.5 0.1 1.6 1.6e+03 8 64 .. 5492 5546 .. 5488 5567 .. 0.75 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.0002 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrweelledtss.s....tseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +e++q + +++e+ +++ee + +++ + + el+ +eLr+++rs++ ++Lee v+++e +++ k +ek ++r ++ + T377476_2 5054 YSELREDIQTKGKEVENFEKNLEECITRKTNtEkclkELMELKTKARELREECRSLRSRCDQLEERVSAMEDemneMKREGKFREKRIKRNEQSL 5148 67889999999999999999996544444332246669999**************************9998733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T377476_2 5149 QEIWDYV 5155 7776655 PP == domain 2 score: -0.5 bits; conditional E-value: 1.6 Syntaxin-6_N 8 eeVqkslnkleslyrrweelledtssstseeldetrteLrkalrsiewdledLeetv 64 ++ q l++ + +++ ++ l++ + st++++++ ++eL++al++ dl d+ +tv T377476_2 5492 SDLQRDLESHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQ--ADLIDIYRTV 5546 6677778888888888875444445567999***********986..4777777777 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 9.0 0.00062 0.63 22 100 .. 5052 5133 .. 5041 5151 .. 0.84 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00062 TPR_MLP1_2 22 aklqklqedlekqaeiakeaqqkYerelvkhaed...ikelqalreeleelkqeiaelkaeaesakaeleeseesweeqkee 100 ++ ++l+ed++++ +++++ +++ e+ ++ + ++ +kel +l++++ el++e ++l+++ +++++ +++ e++++e k e T377476_2 5052 SNYSELREDIQTKGKEVENFEKNLEECITRKTNTekcLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKRE 5133 67889********************99987765533389999*******************************999999876 PP >> Mnd1 Mnd1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 9.5 0.00064 0.65 67 149 .. 5050 5132 .. 5023 5145 .. 0.90 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00064 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...S-HHHHHHHHHHHHHHHH CS Mnd1 67 rekeleklkkeveelkkkikeleekleaekeereeseereelleelqeleeekkelkeeleklke...ldpekleklkeelekake 149 r++++++l+++++ k++++ e++le+ ++++++ e+ l+el el+++ +el+ee+ +l++ +e+++ +++e++++k+ T377476_2 5050 RRSNYSELREDIQTKGKEVENFEKNLEECITRKTNT---EKCLKELMELKTKARELREECRSLRSrcdQLEERVSAMEDEMNEMKR 5132 6788999*****************************...9***********************99854456888888888888776 PP >> APG6 Autophagy protein Apg6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 12.5 0.00059 0.6 26 100 .. 5052 5137 .. 5037 5159 .. 0.50 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00059 APG6 26 dayeeflkklekekkseek...........eeeleelekeleklekeeeelleeleelekekeeleeelekleeeleeleeeeeey 100 +y+e+ ++++++ k+ e+ ++++e+ kel +l+ + +el+ee + l++ +++lee ++++e+e++e+++e + T377476_2 5052 SNYSELREDIQTKGKEVENfeknleecitrKTNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKFR 5137 55555555555554443311111111111123555555555555555555555555555555555555555555555555543322 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 11.7 0.0011 1.1 76 176 .. 5031 5148 .. 5004 5157 .. 0.68 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0011 IncA 76 e.......................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslq...eelksvesrlesleesikelakeir 147 + s+l e+++ +++ e+ le+ +r +e++lk+l e +++ + ee +s++sr++ lee++++++ e+ T377476_2 5031 AteqswtendfdklreegfrrsnySELREDIQTKGKEVENFEKNLEECITRKTNTEKCLKELMELKTKARelrEECRSLRSRCDQLEERVSAMEDEMN 5128 24444555666666667777777888899999999999999988888888888888888888888888776667777777777777777777777777 PP IncA 148 elrelsdlkeevqelrselerlqedlqrl 176 e+ +e + +++++r+ q l T377476_2 5129 EMK------REGKFREKRIKRN---EQSL 5148 777......3333333333333...3333 PP >> DUF724 Protein of unknown function (DUF724) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 9.5 0.002 2 79 171 .. 5060 5152 .. 5043 5161 .. 0.84 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.002 DUF724 79 eLekhGFdVkalqsrlnkLlslkdeqtklleelkklekkieeeesekskleeeldelekkilelerqlallkekkeaadkeiarlkseaekle 171 +++++G +V+ +++ l++ + k++ +k+l+el +l+ k +e ++e ++l ++ d+le++++ +e + + +k++ + +k+i r +++ +++ T377476_2 5060 DIQTKGKEVENFEKNLEECITRKTNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIW 5152 566788899999999999999999999999999999999999999999999999999999999999999999888888888888777766665 PP >> CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 14.7 0.0039 3.9 17 119 .. 5052 5150 .. 5040 5160 .. 0.82 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0039 CENP-F_leu_zip 17 rkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenl 109 ++ + L++ ++ +e+e+ e+n+e+ i+ k e+ +e++el+++ rel+ + +lrs ++Le+ + + ++++e+++ e+ T377476_2 5052 SNYSELREDIQTKGKEVENFEKNLEECIT----RKTNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKFREKR 5140 55567888888888899999999998885....567777778888999999999999999999999999999999999999999999999999 PP CENP-F_leu_zip 110 leekEqekvq 119 ++++Eq + T377476_2 5141 IKRNEQSLQE 5150 9999997555 PP >> TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 12.6 0.011 11 78 163 .. 5058 5143 .. 5036 5159 .. 0.49 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.011 TBPIP 78 daeieelreevqelkqeiselekelkkLeselt.teelleeiqelkkeveeieekLeslkesnkevskeeiekvkkeykklkkewkk 163 ++i+ +ev++++++ +e + + + e+ l+ el+++ el++e++ +++ ++l+e + ++ +e++++k+e k +k +k+ T377476_2 5058 REDIQTKGKEVENFEKNLEECITRKTNTEKCLKeLMELKTKARELREECRSLRSRCDQLEERVSAME-DEMNEMKREGKFREKRIKR 5143 4444444444444444444444444444444421234444444444444444444444444444332.3344444444444444332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 713 (0.0437262); expected 326.1 (0.02) Passed bias filter: 290 (0.0177849); expected 326.1 (0.02) Passed Vit filter: 99 (0.00607138); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 1.91u 0.38s 00:00:02.29 Elapsed: 00:00:00.65 # Mc/sec: 24713.17 // Query: T377476_3 [L=5615] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5615 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 113 (0.00692996); expected 326.1 (0.02) Passed bias filter: 48 (0.0029437); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.60 # Mc/sec: 26772.60 // Query: T369070_1 [L=1793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 196 (0.0120201); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.52 # Mc/sec: 9864.36 // Query: T369070_2 [L=1793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.51 # Mc/sec: 10057.78 // Query: T369070_3 [L=1793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.52 # Mc/sec: 9864.36 // Query: T277660_1 [L=6665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 300 (0.0183981); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.49u 0.31s 00:00:01.80 Elapsed: 00:00:00.59 # Mc/sec: 32317.68 // Query: T277660_2 [L=6664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.52u 0.30s 00:00:01.82 Elapsed: 00:00:00.60 # Mc/sec: 31774.29 // Query: T277660_3 [L=6664] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6664 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 321 (0.019686); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.33s 00:00:01.79 Elapsed: 00:00:00.59 # Mc/sec: 32312.83 // Query: T212059_1 [L=8396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 440 (0.0269839); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.36s 00:00:02.16 Elapsed: 00:00:00.61 # Mc/sec: 39376.28 // Query: T212059_2 [L=8396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.065 12.9 16.3 0.2 11.3 16.3 1.8 1 Collagen Collagen triple helix repeat (20 copies) Domain annotation for each model (and alignments): >> Collagen Collagen triple helix repeat (20 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 16.3 1.2e-05 0.2 7 47 .. 1281 1321 .. 1278 1325 .. 0.38 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 1.2e-05 XXXXXXXXXXXXXXXXXX---EEEE-TTSSXXXXXXXXXXX CS Collagen 7 GepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGa 47 G+pG G pG+rG++G G +G++Gp+G G pG++G++ T212059_2 1281 GQPGLGGWPGHRGPHGIGGWPGHRGPHGIGGWPGHRGPQSR 1321 33333333333333333333333333333333333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 521 (0.0319514); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.87u 0.36s 00:00:02.23 Elapsed: 00:00:00.60 # Mc/sec: 40032.55 // Query: T212059_3 [L=8396] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8396 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.82u 0.37s 00:00:02.19 Elapsed: 00:00:00.63 # Mc/sec: 38126.24 // Query: T307839_1 [L=1292] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1292 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.53 # Mc/sec: 6973.95 // Query: T307839_2 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 312 (0.0191341); expected 326.1 (0.02) Passed bias filter: 206 (0.0126334); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 7386.66 // Query: T307839_3 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-11 43.3 0.2 4e-11 42.7 0.2 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.7 0.2 2.4e-15 4e-11 136 209 .. 1154 1240 .. 1154 1258 .. 0.88 Alignments for each domain: == domain 1 score: 42.7 bits; conditional E-value: 2.4e-15 -TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE...... CS RVT_1 136 svlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee.lqelleaveewlkesglkinpeKtklvlf...s 209 ++lSPllf +m+ l r +r+ ++v+l+++aDD++++ +++++ ++ll+ + e+ k sg+k n +K+ ++l+ + T307839_3 1154 CPLSPLLFITVMEVLARAIRHGK*ikgiqiskEEVKLSLFADDMIVYLENPKDlSKKLLDLINEFSKVSGYKTNVHKSVALLYtnsD 1240 89*******************99***************************999678899999999999***********99875431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 6595.23 // Query: T333135_1 [L=1155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1155 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 181 (0.0111002); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.72 # Mc/sec: 4589.25 // Query: T333135_2 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 171 (0.0104869); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.73 # Mc/sec: 4522.46 // Query: T333135_3 [L=1154] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1154 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 5158.43 // Query: T002722_1 [L=3040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 486 (0.029805); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.35s 00:00:01.67 Elapsed: 00:00:00.64 # Mc/sec: 13588.94 // Query: T002722_2 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 228 (0.0139826); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.39s 00:00:01.81 Elapsed: 00:00:00.76 # Mc/sec: 11439.56 // Query: T002722_3 [L=3039] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3039 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.75 # Mc/sec: 11592.08 // Query: T007019_1 [L=8032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-11 42.0 0.0 1.2e-10 41.3 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.3 0.0 7.6e-15 1.2e-10 60 106 .. 672 718 .. 660 722 .. 0.90 Alignments for each domain: == domain 1 score: 41.3 bits; conditional E-value: 7.6e-15 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007019_1 672 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 718 89*****9857999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 299 (0.0183368); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.39u 0.44s 00:00:02.83 Elapsed: 00:00:00.93 # Mc/sec: 24707.73 // Query: T007019_2 [L=8032] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-05 22.7 0.0 7.4e-05 22.2 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal b Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 0.0 4.5e-09 7.4e-05 170 210 .. 95 135 .. 91 140 .. 0.88 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 4.5e-09 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeede 210 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + T007019_2 95 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGP 135 789*******************************9886555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8032 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.50u 0.41s 00:00:02.91 Elapsed: 00:00:01.12 # Mc/sec: 20334.68 // Query: T007019_3 [L=8031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (8031 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.39u 0.45s 00:00:02.84 Elapsed: 00:00:00.91 # Mc/sec: 25247.61 // Query: T259482_1 [L=510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1447 (0.0887403); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 57 (0.00349565); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.42u 0.40s 00:00:01.81 Elapsed: 00:00:00.94 # Mc/sec: 1552.15 // Query: T259482_2 [L=510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (510 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1645 (0.100883); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 77 (0.00472219); expected 16.3 (0.001) Passed Fwd filter: 36 (0.00220778); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.42s 00:00:02.08 Elapsed: 00:00:00.78 # Mc/sec: 1870.54 // Query: T259482_3 [L=509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (509 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1094 (0.0670919); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 17 (0.00104256); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.42s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 2110.38 // Query: T184030_1 [L=3041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 243 (0.0149025); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.32s 00:00:01.61 Elapsed: 00:00:00.79 # Mc/sec: 11012.38 // Query: T184030_2 [L=3041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.30s 00:00:01.46 Elapsed: 00:00:00.68 # Mc/sec: 12793.80 // Query: T184030_3 [L=3040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.70 # Mc/sec: 12424.18 // Query: T337113_1 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.013 15.4 0.1 31 4.5 0.0 3.3 3 DUF1736 Domain of unknown function (DUF1736) Domain annotation for each model (and alignments): >> DUF1736 Domain of unknown function (DUF1736) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.0 0.0036 59 40 65 .. 278 303 .. 276 305 .. 0.91 2 ? 2.8 0.0 0.0065 1.1e+02 40 65 .. 339 364 .. 338 366 .. 0.91 3 ? 4.5 0.0 0.0019 31 40 69 .. 400 429 .. 399 431 .. 0.93 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.0036 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnl 65 fP+ Lc D s ++I i s++ +R++ T337113_1 278 FPRVLCKDSSTNTIVTIASAISTRAV 303 79*****************9998876 PP == domain 2 score: 2.8 bits; conditional E-value: 0.0065 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnl 65 fP+ Lc D s ++I i s++ +R++ T337113_1 339 FPRVLCKDGSTNTIVTIASAISTRAV 364 79*****************9998876 PP == domain 3 score: 4.5 bits; conditional E-value: 0.0019 DUF1736 40 fPsqLcfDWsmgsIpliesllDpRnlatll 69 fP+ Lc D s ++I i s++ +R++++++ T337113_1 400 FPRVLCKDGSTNTIVTIVSAISTRAVLSCI 429 79**********************999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.75 # Mc/sec: 3642.79 // Query: T337113_2 [L=955] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (955 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.75 # Mc/sec: 3642.79 // Query: T337113_3 [L=954] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.61 10.3 8.4 18 5.6 0.2 3.6 3 Tox-HNH-EHHH HNH/Endo VII superfamily nuclease toxins 4.5 7.4 11.3 16 5.6 0.4 3.4 3 HHV-5_US34A Herpesvirus US34A protein family Domain annotation for each model (and alignments): >> Tox-HNH-EHHH HNH/Endo VII superfamily nuclease toxins # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.2 0.0023 18 30 58 .. 285 310 .. 271 316 .. 0.71 2 ? 4.8 0.4 0.0041 33 38 58 .. 349 371 .. 338 377 .. 0.71 3 ? 2.9 0.2 0.016 1.3e+02 34 48 .. 411 422 .. 400 434 .. 0.80 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0023 Tox-HNH-EHHH 30 HsdghaggeggnrgPHfnarppkngerlr 58 ++ h +nr+ Hf+a k r+r T337113_3 285 QQHEHDR---HNRERHFHACCAKTAARTR 310 4444555...99******98887765555 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0041 Tox-HNH-EHHH 38 e.g.gnrgPHfnarppkngerlr 58 e + +nr+ Hf+a k r+r T337113_3 349 EhDrHNRERHFHACCAKTAARTR 371 334599******98887765555 PP == domain 3 score: 2.9 bits; conditional E-value: 0.016 Tox-HNH-EHHH 34 haggeg.gnrgPHfna 48 h + +nr+ Hf+a T337113_3 411 H----DrHNRERHFHA 422 2....4599******8 PP >> HHV-5_US34A Herpesvirus US34A protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.4 0.002 16 29 62 .. 277 312 .. 268 314 .. 0.77 2 ? 4.6 0.9 0.004 33 29 62 .. 338 373 .. 330 375 .. 0.78 3 ? 2.5 0.2 0.019 1.5e+02 29 46 .. 399 416 .. 391 421 .. 0.84 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.002 HHV-5_US34A 29 lftvavqrvkqerdahlr..ryeerlqknrarrrqs 62 + t avqr + e d h r + k ar r s T337113_3 277 ISTRAVQRQQHEHDRHNRerHFHACCAKTAARTRSS 312 6789************86325777788888888876 PP == domain 2 score: 4.6 bits; conditional E-value: 0.004 HHV-5_US34A 29 lftvavqrvkqerdahlr..ryeerlqknrarrrqs 62 + t avqr + e d h r + k ar r s T337113_3 338 ISTRAVQRRQHEHDRHNRerHFHACCAKTAARTRSS 373 5689************86325777788888888876 PP == domain 3 score: 2.5 bits; conditional E-value: 0.019 HHV-5_US34A 29 lftvavqrvkqerdahlr 46 + t avqr + e d h r T337113_3 399 ISTRAVQRWQHEHDRHNR 416 5689************88 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (954 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.56 # Mc/sec: 4873.63 // Query: T139191_1 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.67 # Mc/sec: 4923.19 // Query: T139191_2 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.63 # Mc/sec: 5235.77 // Query: T139191_3 [L=1153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1153 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.57 # Mc/sec: 5687.13 // Query: T321206_1 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 112 (0.00686864); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.67 # Mc/sec: 8006.05 // Query: T321206_2 [L=1875] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1875 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 9933.44 // Query: T321206_3 [L=1874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.59 # Mc/sec: 9086.77 // Query: T172069_1 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.71 # Mc/sec: 7345.48 // Query: T172069_2 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.68 # Mc/sec: 7669.55 // Query: T172069_3 [L=1823] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1823 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 7345.48 // Query: T090598_1 [L=1541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.66 # Mc/sec: 6679.60 // Query: T090598_2 [L=1540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 6993.14 // Query: T090598_3 [L=1540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1540 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 6478.94 // Query: T367445_1 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.65 # Mc/sec: 3045.68 // Query: T367445_2 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3473.15 // Query: T367445_3 [L=692] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (692 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.70 # Mc/sec: 2828.13 // Query: T167672_1 [L=1363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.59 # Mc/sec: 6609.00 // Query: T167672_2 [L=1363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 866 (0.0531093); expected 326.1 (0.02) Passed bias filter: 422 (0.02588); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.73 # Mc/sec: 5341.52 // Query: T167672_3 [L=1362] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1362 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 536 (0.0328713); expected 326.1 (0.02) Passed bias filter: 186 (0.0114068); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.78 # Mc/sec: 4995.45 // Query: T153834_1 [L=4147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 417 (0.0255734); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.80u 0.37s 00:00:02.17 Elapsed: 00:00:00.77 # Mc/sec: 15407.61 // Query: T153834_2 [L=4147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 642 (0.039372); expected 326.1 (0.02) Passed bias filter: 274 (0.0168036); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.38u 0.55s 00:00:02.93 Elapsed: 00:00:00.90 # Mc/sec: 13182.07 // Query: T153834_3 [L=4146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 414 (0.0253894); expected 326.1 (0.02) Passed bias filter: 136 (0.00834049); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.38s 00:00:02.15 Elapsed: 00:00:01.00 # Mc/sec: 11861.00 // Query: T051632_1 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.80 # Mc/sec: 11672.19 // Query: T051632_2 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.72 # Mc/sec: 12969.10 // Query: T051632_3 [L=3264] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3264 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 337 (0.0206672); expected 326.1 (0.02) Passed bias filter: 126 (0.00772722); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.76 # Mc/sec: 12286.51 // Query: T135768_1 [L=194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 156 (0.00956703); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.60 # Mc/sec: 925.00 // Query: T135768_2 [L=193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 117 (0.00717527); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.59 # Mc/sec: 935.83 // Query: T135768_3 [L=193] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.71 # Mc/sec: 777.66 // Query: T379415_1 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.4 0.0 0.045 13.4 0.0 1.5 1 Homeobox Homeobox domain Domain annotation for each model (and alignments): >> Homeobox Homeobox domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 2.8e-06 0.045 6 45 .. 381 420 .. 380 421 .. 0.94 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.8e-06 SS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHH CS Homeobox 6 tftkeqleeLeelFeenrypsaeereeLAkklgLeerqVk 45 +f++ l+eL + F ++ y++ +r++LA ++++e+ V T379415_1 381 AFSRLHLKELDSIFPRSEYLDVFARKQLAICMDVSEAEVE 420 588899******************************9995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.62 # Mc/sec: 3086.93 // Query: T379415_2 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.80 # Mc/sec: 2392.37 // Query: T379415_3 [L=669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 327 (0.020054); expected 326.1 (0.02) Passed bias filter: 162 (0.00993499); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.66 # Mc/sec: 2899.84 // Query: T121016_1 [L=182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.15 11.9 5.6 0.2 11.5 5.6 1.2 1 DUF3915 Protein of unknown function (DUF3915) 0.27 11.7 22.3 0.43 11.0 22.3 1.3 1 FAM27 FAM27 D and E protein family 4 7.0 13.6 2.2 7.8 3.1 2.4 2 Mso1_Sec1_bdg Sec1-binding region of Mso1 Domain annotation for each model (and alignments): >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 5.6 3.7e-05 0.2 7 45 .. 19 57 .. 13 63 .. 0.79 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 3.7e-05 DUF3915 7 credfrechrghccdrdrerererederekerekkkerh 45 c + h + ++rdre e++ + +re er+++ e + T121016_1 19 CHLYHTHTHTQRETERDRETETDTHTHRETERDRETETD 57 555556778888899*************99998887754 PP >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 22.3 8e-05 0.43 49 89 .. 23 64 .. 16 66 .. 0.80 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 8e-05 FAM27 49 kththtgthtqtdRereRnrqrlRdrer.Rengrhtrthart 89 +ththt t+ dRe e +++ R++er Re+ ++t+th+++ T121016_1 23 HTHTHTQRETERDRETETDTHTHRETERdRETETDTHTHTHS 64 578888888888888888889999977658999999999986 PP >> Mso1_Sec1_bdg Sec1-binding region of Mso1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 3.1 0.0004 2.2 5 23 .. 28 46 .. 21 47 .. 0.86 2 ? 4.8 2.7 0.0034 19 9 22 .. 48 61 .. 46 62 .. 0.90 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0004 Mso1_Sec1_bdg 5 lslssEkDGdteddTlvhr 23 + +++E+D +te+dT+ hr T121016_1 28 TQRETERDRETETDTHTHR 46 45679*************8 PP == domain 2 score: 4.8 bits; conditional E-value: 0.0034 Mso1_Sec1_bdg 9 sEkDGdteddTlvh 22 +E+D +te+dT+ h T121016_1 48 TERDRETETDTHTH 61 8***********98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 766 (0.0469766); expected 326.1 (0.02) Passed bias filter: 259 (0.0158837); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.50 # Mc/sec: 1041.34 // Query: T121016_2 [L=182] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.02 15.3 27.6 0.031 14.7 27.6 1.3 1 FAM27 FAM27 D and E protein family 0.3 10.1 0.8 0.26 10.3 0.8 1.1 1 Zip ZIP Zinc transporter 1.4 7.4 3.9 1.7 7.1 3.9 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> FAM27 FAM27 D and E protein family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 27.6 5.7e-06 0.031 54 91 .] 21 65 .. 15 66 .. 0.81 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 5.7e-06 FAM27 54 tgthtqtdRereRnrqrlRd.....rerRen..grhtrthartkt 91 tht+t+Rer+R++ r+R+ ++Re+ r+t+th++t+t T121016_2 21 STTHTHTHRERQRETERQRQththtERQRETerQRQTHTHTHTQT 65 569****************99999855677755778888888876 PP >> Zip ZIP Zinc transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.8 4.8e-05 0.26 130 171 .. 26 68 .. 15 153 .. 0.69 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 4.8e-05 Zip 130 dkvee.seekedhvaeadtdadskeelrngkqeksesekeqas 171 +++ e ++e e++ + + +++++ e++r+++++++ +++++++ T121016_2 26 HTHRErQRETERQRQTHTHTERQRETERQRQTHTHTHTQTHPK 68 2222202222222333344444445555555555555555544 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 3.9 0.00032 1.7 269 307 .. 26 64 .. 15 98 .. 0.44 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00032 Presenilin 269 ssseseeeeeeesaeaeseaeesseekeeeessesseee 307 ++++++++e+e+++++++++e+++e++++++++++++++ T121016_2 26 HTHRERQRETERQRQTHTHTERQRETERQRQTHTHTHTQ 64 111122222222222222222222221111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (182 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1671 (0.102478); expected 326.1 (0.02) Passed bias filter: 598 (0.0366736); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47 # Mc/sec: 1107.81 // Query: T121016_3 [L=181] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00056 20.1 3.1 0.00068 19.8 3.1 1.1 1 DUF1777 Protein of unknown function (DUF1777) ------ inclusion threshold ------ 0.11 12.3 6.1 0.19 11.6 6.1 1.4 1 DUF3915 Protein of unknown function (DUF3915) 0.37 10.8 6.9 0.56 10.2 6.9 1.2 1 Auts2 Autism susceptibility gene 2 protein 0.37 11.2 19.4 0.6 10.6 19.4 1.2 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 3.1 1.7e-07 0.00068 24 63 .. 30 59 .. 22 108 .. 0.58 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 1.7e-07 DUF1777 24 rdrdrdrdrsrdrrsrerersrsrsrrrrersrsrdrsrr 63 rdr+r+rdr +r+++++r+r er+r+rdr+++ T121016_3 30 RDRERQRDR-----DRHTHTQRDR-----ERQRDRDRHTH 59 111111111.....1111111111.....22222222222 PP >> DUF3915 Protein of unknown function (DUF3915) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 6.1 4.7e-05 0.19 19 48 .. 27 60 .. 21 79 .. 0.58 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 4.7e-05 DUF3915 19 ccdrdrerererede....rekerekkkerhavc 48 ++rdrer+r+r+++ r++er+++++rh+ T121016_3 27 HTERDRERQRDRDRHthtqRDRERQRDRDRHTHT 60 3456666555555441122555555555555544 PP >> Auts2 Autism susceptibility gene 2 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 6.9 0.00014 0.56 179 214 .. 25 59 .. 12 63 .. 0.71 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00014 Auts2 179 erererdrererekrdssvskdekdRdslekeRhse 214 + + erdrer+r++ + ++++ +++R++ +++Rh++ T121016_3 25 HTHTERDRERQRDRDRHTHTQRDRERQR-DRDRHTH 59 3445666666667777778888888876.6788865 PP >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 19.4 0.00015 0.6 68 97 .. 29 57 .. 22 59 .. 0.65 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00015 PRP38_assoc 68 prdrdrardRdrrrskrsreRdrsrsrdrd 97 +rdr+r+rdRdr + +r+R+r r+rdr T121016_3 29 ERDRERQRDRDRHTH-TQRDRERQRDRDRH 57 267777777777766.77777777777764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (181 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 771 (0.0472832); expected 326.1 (0.02) Passed bias filter: 309 (0.0189501); expected 326.1 (0.02) Passed Vit filter: 43 (0.00263707); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1056.76 // Query: T183242_1 [L=2777] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2777 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 14186.65 // Query: T183242_2 [L=2776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.55 # Mc/sec: 14439.39 // Query: T183242_3 [L=2776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2776 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.56 # Mc/sec: 14181.54 // Query: T155757_1 [L=793] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (793 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 145 (0.00889243); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.51 # Mc/sec: 4448.31 // Query: T155757_2 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 299 (0.0183368); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.52 # Mc/sec: 4357.26 // Query: T155757_3 [L=792] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (792 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4357.26 // Query: T353485_1 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1226 (0.075187); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 63 (0.00386361); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 9416.08 // Query: T353485_2 [L=1908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1428 (0.0875751); expected 326.1 (0.02) Passed bias filter: 306 (0.0187661); expected 326.1 (0.02) Passed Vit filter: 149 (0.00913774); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.33s 00:00:01.67 Elapsed: 00:00:00.63 # Mc/sec: 8664.23 // Query: T353485_3 [L=1908] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1908 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1224 (0.0750644); expected 326.1 (0.02) Passed bias filter: 223 (0.0136759); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 9251.63 // Query: T323215_1 [L=1647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-69 227.7 402.5 1.2e-08 34.8 7.0 38.8 35 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.2 0.13 2.1e+03 38 47 .. 39 48 .. 38 52 .. 0.81 2 ? -0.1 0.0 0.061 9.9e+02 8 34 .. 52 77 .. 49 79 .. 0.86 3 ! 34.8 7.0 7.6e-13 1.2e-08 3 49 .. 79 124 .. 77 125 .. 0.96 4 ! 31.3 7.0 9.4e-12 1.5e-07 1 38 [. 130 166 .. 130 176 .. 0.93 5 ! 24.3 4.7 1.5e-09 2.4e-05 5 38 .. 177 209 .. 171 218 .. 0.92 6 ! 23.3 6.3 3e-09 4.9e-05 5 38 .. 221 253 .. 220 256 .. 0.95 7 ! 11.1 3.2 2e-05 0.33 1 34 [. 249 277 .. 249 288 .. 0.77 8 ! 23.0 16.3 3.8e-09 6.2e-05 1 49 [. 291 338 .. 291 339 .. 0.99 9 ! 8.9 1.6 9.6e-05 1.6 8 39 .. 352 382 .. 350 385 .. 0.85 10 ! 16.7 5.8 3.5e-07 0.0058 2 33 .. 377 407 .. 376 411 .. 0.96 11 ! 10.3 1.5 3.4e-05 0.56 18 50 .] 404 436 .. 404 436 .. 0.95 12 ! 19.2 0.3 5.7e-08 0.00093 23 48 .. 492 517 .. 461 517 .. 0.80 13 ! 24.4 0.9 1.4e-09 2.3e-05 29 50 .] 519 540 .. 519 540 .. 0.99 14 ! 12.5 0.4 7.3e-06 0.12 31 47 .. 542 558 .. 542 560 .. 0.95 15 ! 4.9 1.5 0.0017 27 14 39 .. 557 582 .. 557 587 .. 0.89 16 ! 8.9 2.1 9.5e-05 1.5 4 30 .. 592 617 .. 590 620 .. 0.89 17 ! 7.0 0.5 0.00039 6.3 3 18 .. 623 637 .. 622 641 .. 0.87 18 ! 23.0 14.3 3.8e-09 6.2e-05 1 50 [] 642 690 .. 642 690 .. 0.91 19 ! 8.8 2.3 0.0001 1.7 21 38 .. 682 699 .. 674 707 .. 0.82 20 ! 25.3 7.7 7.2e-10 1.2e-05 2 50 .] 696 753 .. 696 753 .. 0.81 21 ! 27.7 7.2 1.3e-10 2.1e-06 20 50 .] 744 774 .. 743 774 .. 0.96 22 ! 16.2 9.3 4.9e-07 0.0081 16 49 .. 761 794 .. 760 796 .. 0.91 23 ! 3.1 12.2 0.0064 1e+02 17 50 .] 783 828 .. 781 828 .. 0.81 24 ? 1.9 5.5 0.015 2.5e+02 14 38 .. 813 837 .. 812 851 .. 0.79 25 ? 0.0 34.4 0.056 9.2e+02 2 39 .. 857 992 .. 856 1001 .. 0.91 26 ? -0.2 11.0 0.065 1.1e+03 14 50 .] 999 1037 .. 985 1037 .. 0.78 27 ? -2.8 1.2 0.44 7.2e+03 11 11 .. 1113 1113 .. 1101 1147 .. 0.46 28 ? -0.3 10.1 0.069 1.1e+03 19 39 .. 1300 1321 .. 1288 1333 .. 0.69 29 ! 8.0 3.9 0.00018 2.9 1 25 [. 1348 1371 .. 1348 1374 .. 0.94 30 ! 13.0 0.4 4.9e-06 0.081 2 15 .. 1382 1394 .. 1382 1401 .. 0.82 31 ! 12.5 19.8 7e-06 0.11 1 37 [. 1402 1481 .. 1402 1483 .. 0.99 32 ! 11.0 2.4 2.2e-05 0.36 1 26 [. 1478 1502 .. 1478 1503 .. 0.93 33 ! 3.7 4.5 0.0039 64 5 26 .. 1504 1524 .. 1502 1524 .. 0.97 34 ! 14.5 4.1 1.7e-06 0.028 16 38 .. 1537 1559 .. 1535 1568 .. 0.86 35 ! 2.7 0.3 0.0084 1.4e+02 2 22 .. 1556 1575 .. 1555 1578 .. 0.86 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.13 DUF4705 38 lppagLsrPs 47 lpp++LsrP+ T323215_1 39 LPPGSLSRPR 48 6889999985 PP == domain 2 score: -0.1 bits; conditional E-value: 0.061 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsa 34 +p q + ++ ++gl rp+ L++ sa T323215_1 52 SQPPQ-TKLMTHNGLFRPIPYLTAVSA 77 67778.999**********99999877 PP == domain 3 score: 34.8 bits; conditional E-value: 7.6e-13 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 A as++p q +++ + +gl rps++Lp+ s+Gp+l+++ L rPssC T323215_1 79 EATASQQPPQ-AQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSC 124 689*******.************************************ PP == domain 4 score: 31.3 bits; conditional E-value: 9.4e-12 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 PgpAPas++pLq ++ l++++l +p +L++ s Gp+ T323215_1 130 PGPAPASWQPLQ-AQPLPPVSLYSPNICLTADSSGPVS 166 9***********.***********************86 PP == domain 5 score: 24.3 bits; conditional E-value: 1.5e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P++++ L+ +++l++sgl rps++L+ A++Gp++ T323215_1 177 PTFQQLLH-TQLLPPSGLFRPSSCLTRAFPGPTF 209 899*****.***********************98 PP == domain 6 score: 23.3 bits; conditional E-value: 3e-09 DUF4705 5 PasrrpLqapaslqasglsrpsaqLpvAsaGpkl 38 P+s++p q ++ l+++gls+ s++L+vAs+Gp + T323215_1 221 PVSQQPRQ-AQVLPHTGLSTSSSCLTVASPGPAP 253 9*******.***********************87 PP == domain 7 score: 11.1 bits; conditional E-value: 2e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsa 34 PgpAP+ r+Lqa + l ++s+ +++As+ T323215_1 249 PGPAPVPGRHLQAQNF-----LKSASLVPTAASW 277 9***********5444.....4446888888887 PP == domain 8 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 PgpAPas ++Lq ++ l++ g+srps+ +++ + + lp +L+ PssC T323215_1 291 PGPAPASCQRLQ-AQPLPHGGFSRPSSSSGLSLQAQLLPHNSLFWPSSC 338 9***********.************************************ PP == domain 9 score: 8.9 bits; conditional E-value: 9.6e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl.p 39 + Lq a l + g+ rps+ L AsaGp l + T323215_1 352 SQTLQ--ACLLPGGMNRPSFDLRTASAGPALaS 382 57799..889999****************9944 PP == domain 10 score: 16.7 bits; conditional E-value: 3.5e-07 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAs 33 gpA as+ Lq +++l++ g rps++Lp++s T323215_1 377 GPALASQGLLQ-AQLLPHGGCPRPSFCLPASS 407 9**********.******************98 PP == domain 11 score: 10.3 bits; conditional E-value: 3.4e-05 DUF4705 18 qasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +as+l r s+ L+vA Gp+ ++srPs CL T323215_1 404 PASSLNRHSSSLTVAHLGPTHDCRAISRPSACL 436 68999****************999********9 PP == domain 12 score: 19.2 bits; conditional E-value: 5.7e-08 DUF4705 23 srpsaqLpvAsaGpklppagLsrPss 48 ++ + LpvAs G+++p+++Lsr+ s T323215_1 492 LQTKLSLPVASTGQNCPQVSLSRANS 517 488999*****************976 PP == domain 13 score: 24.4 bits; conditional E-value: 1.4e-09 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 LpvAsaG+++p+++L+ PssCL T323215_1 519 LPVASAGQNRPQVSLFTPSSCL 540 8********************9 PP == domain 14 score: 12.5 bits; conditional E-value: 7.3e-06 DUF4705 31 vAsaGpklppagLsrPs 47 vAsaG klp++gLsrPs T323215_1 542 VASAGAKLPQVGLSRPS 558 8***************6 PP == domain 15 score: 4.9 bits; conditional E-value: 0.0017 DUF4705 14 paslqasglsrpsaqLpvAsaGpklp 39 p +l + g+ rps++L++ s+ p lp T323215_1 557 PSLLLPEGMYRPSLCLTADSPCPALP 582 678999************99999997 PP == domain 16 score: 8.9 bits; conditional E-value: 9.5e-05 DUF4705 4 APasrrpLqapaslqasglsrpsaqLp 30 APa+r+ + +++l++ gl +p ++L T323215_1 592 APAFRQLVR-AQLLPHGGLFSPNSCLL 617 9*****555.***************95 PP == domain 17 score: 7.0 bits; conditional E-value: 0.00039 DUF4705 3 pAPasrrpLqapaslq 18 +APas++pL +++++ T323215_1 623 SAPASHWPLE-AQLMP 637 6********9.99887 PP == domain 18 score: 23.0 bits; conditional E-value: 3.8e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpAPa+rrpLq ++ l++sglsrp ++ p ++ + ++L PssCL T323215_1 642 TGPAPACRRPLQ-AQPLPHSGLSRPTSFSPWPPGAMLPALGSLCGPSSCL 690 8***********.***************99876666667899*******9 PP == domain 19 score: 8.8 bits; conditional E-value: 0.0001 DUF4705 21 glsrpsaqLpvAsaGpkl 38 +l ps++LpvAs+G+ + T323215_1 682 SLCGPSSCLPVASVGQAR 699 5667***********986 PP == domain 20 score: 25.3 bits; conditional E-value: 7.2e-10 DUF4705 2 gpAPasrrpLqa........paslq..asglsrpsaqLpvAsaGpklppagLsrPssCL 50 g+A as +p qa + +l+ +s++ ++ ++Lp+AsaGp + ++gLsr+ssCL T323215_1 696 GQARASGQPFQA*rlllcilS-RLWtsSSRPLQAQLFLPAASAGPDCCQVGLSRASSCL 753 678888888888888888852.44311567899*************************9 PP == domain 21 score: 27.7 bits; conditional E-value: 1.3e-10 DUF4705 20 sglsrpsaqLpvAsaGpklppagLsrPssCL 50 +glsr+s++Lpv saGp++p++gL rPss L T323215_1 744 VGLSRASSCLPVPSAGPSRPQVGLPRPSSGL 774 79***************************87 PP == domain 22 score: 16.2 bits; conditional E-value: 4.9e-07 DUF4705 16 slqasglsrpsaqLpvAsaGpklppagLsrPssC 49 s +++gl rps++L +A +G k p ++LsrPss+ T323215_1 761 SRPQVGLPRPSSGLSAAAPGAKVPRVSLSRPSSS 794 56899**************************975 PP == domain 23 score: 3.1 bits; conditional E-value: 0.0064 DUF4705 17 lqasglsrps.aqLpvAsaGpkl...........ppagLsrPssCL 50 + ++lsrps ++Lp+As Gp pp gL rPs +L T323215_1 783 VPRVSLSRPSsSCLPAASFGPAQlmppgglpgllPPEGLHRPSLSL 828 57899***9637*********9989888888888888888888765 PP == domain 24 score: 1.9 bits; conditional E-value: 0.015 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl 38 p +l++ gl+rps+ L++ s+ p T323215_1 813 PGLLPPEGLHRPSLSLTADSPRPAS 837 6689999*******99998877765 PP == domain 25 score: 0.0 bits; conditional E-value: 0.056 DUF4705 2 gpAPasrrpLqa......................................................................................pa 15 gpAPa+++pLqa ++ T323215_1 857 GPAPACQWPLQAhgahssqrpfqaqffpsgglcgprtsssrplqthlqppgvlsgpssssrlrlqarllppnnlfglsacaspgglgrptasssqapqAQ 956 9***********************************************************************************************8778 PP DUF4705 16 slqasglsrpsaqLpvAsaGpkl............p 39 ++ glsr s+++p+As+Gpk p T323215_1 957 VRPHGGLSRISSCPPMASPGPKWspvsgllhaqlgP 992 88*********************5555555555555 PP == domain 26 score: -0.2 bits; conditional E-value: 0.065 DUF4705 14 paslqasglsrpsaqLpvAsa..GpklppagLsrPssCL 50 p s ++ gl ps +Lp+ s+ + lp +gL+ P sCL T323215_1 999 PSSRPHGGLPGPSPCLPPGSPraAQFLPHGGLLMPNSCL 1037 889999************996225666***********9 PP == domain 27 score: -2.8 bits; conditional E-value: 0.44 DUF4705 11 L 11 L T323215_1 1113 L 1113 2 PP == domain 28 score: -0.3 bits; conditional E-value: 0.069 DUF4705 19 asglsrpsaqLpvAsaGpkl.p 39 ++++ r+ ++Lp+As Gp++ + T323215_1 1300 SRRPLRAQLFLPAASLGPTPaS 1321 6777788888888888887752 PP == domain 29 score: 8.0 bits; conditional E-value: 0.00018 DUF4705 1 PgpAPasrrpLqapaslqasglsrp 25 Pgp+ asr+p q +++l++ g sr T323215_1 1348 PGPGQASRWPRQ-AQLLPSDGISRS 1371 9***********.********9985 PP == domain 30 score: 13.0 bits; conditional E-value: 4.9e-06 DUF4705 2 gpAPasrrpLqapa 15 gpA+asrrpLqa + T323215_1 1382 GPAWASRRPLQA-Q 1394 9**********4.4 PP == domain 31 score: 12.5 bits; conditional E-value: 7e-06 DUF4705 1 PgpAPasrrpLqa............................................paslqasglsrpsaqLpvAsaGpk 37 PgpAPasr+pLqa pas+++ l +ps+ L +A++Gp T323215_1 1402 PGPAPASRQPLQA*vvlksawkwawkscklaslgpapsswplqvqnflesaspgpapPASQWPL-LAQPSSWLSAAFPGPA 1481 9***************************************************************.***************7 PP == domain 32 score: 11.0 bits; conditional E-value: 2.2e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 PgpA +++pLq ++ l +s++ +++ T323215_1 1478 PGPAFDFWWPLQ-AQNLTSSRPLQAR 1502 9***********.*******999876 PP == domain 33 score: 3.7 bits; conditional E-value: 0.0039 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pasrrp + ++ +++sgls+ps T323215_1 1504 PASRRPAR-AQPQPHSGLSTPS 1524 9*******.************7 PP == domain 34 score: 14.5 bits; conditional E-value: 1.7e-06 DUF4705 16 slqasglsrpsaqLpvAsaGpkl 38 +l+ +++rps++LpvAs Gp T323215_1 1537 LLPFGRFGRPSSCLPVASLGPAH 1559 578889***************87 PP == domain 35 score: 2.7 bits; conditional E-value: 0.0084 DUF4705 2 gpAPasrrpLqapaslqasgl 22 gpA s+rp q ++ ++ +l T323215_1 1556 GPAHSSQRPFQ-APFFPSGSL 1575 8**********.888888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 8890.16 // Query: T323215_2 [L=1647] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-62 205.3 406.4 1.5e-09 37.8 16.2 36.1 30 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 2.9 1.6e-07 0.0026 29 48 .. 40 59 .. 31 59 .. 0.95 2 ! 11.9 3.8 1.1e-05 0.17 2 43 .. 67 108 .. 67 113 .. 0.90 3 ! 26.1 6.2 4.1e-10 6.7e-06 1 36 [. 119 153 .. 119 155 .. 0.94 4 ! 12.9 9.9 5.5e-06 0.09 3 50 .] 153 221 .. 151 221 .. 0.91 5 ! 4.2 7.5 0.0028 46 2 47 .. 195 230 .. 195 237 .. 0.68 6 ! 12.4 2.7 7.6e-06 0.12 3 26 .. 240 262 .. 239 269 .. 0.91 7 ! 15.1 4.9 1.1e-06 0.018 10 39 .. 289 317 .. 289 319 .. 0.96 8 ! 19.9 0.5 3.5e-08 0.00058 22 47 .. 333 358 .. 327 359 .. 0.91 9 ! 15.3 12.6 9.5e-07 0.015 8 38 .. 372 401 .. 365 417 .. 0.88 10 ! 16.1 5.0 5.4e-07 0.0089 9 48 .. 458 496 .. 452 498 .. 0.94 11 ? 1.9 0.4 0.014 2.3e+02 7 27 .. 498 518 .. 497 519 .. 0.72 12 ! 6.6 4.3 0.00049 8 3 29 .. 536 562 .. 513 565 .. 0.90 13 ! 14.9 1.4 1.3e-06 0.021 1 30 [. 566 594 .. 566 597 .. 0.96 14 ? 1.0 4.7 0.028 4.6e+02 18 50 .] 601 637 .. 598 637 .. 0.80 15 ! 10.0 3.3 4.4e-05 0.71 8 43 .. 638 672 .. 637 677 .. 0.89 16 ! 20.7 15.6 1.9e-08 0.00031 2 49 .. 685 731 .. 684 731 .. 0.94 17 ? -1.7 0.0 0.19 3.1e+03 7 15 .. 732 739 .. 732 744 .. 0.81 18 ! 10.4 0.6 3.2e-05 0.52 1 15 [. 747 760 .. 747 767 .. 0.82 19 ! 21.3 14.2 1.3e-08 0.00021 1 39 [. 768 818 .. 768 821 .. 0.93 20 ! 24.6 25.1 1.2e-09 2e-05 1 50 [] 822 905 .. 822 905 .. 0.95 21 ! 9.5 6.7 6.3e-05 1 29 50 .] 905 926 .. 904 926 .. 0.97 22 ! 21.6 2.8 1.1e-08 0.00017 17 50 .] 926 959 .. 926 959 .. 0.96 23 ! 37.8 16.2 9.1e-14 1.5e-09 1 50 [] 964 1026 .. 964 1026 .. 0.85 24 ? -3.6 2.0 0.75 1.2e+04 7 24 .. 1064 1100 .. 1062 1129 .. 0.54 25 ? -1.8 0.4 0.22 3.5e+03 4 12 .. 1138 1146 .. 1138 1170 .. 0.83 26 ! 3.2 0.9 0.006 98 8 27 .. 1290 1308 .. 1287 1310 .. 0.87 27 ! 11.6 10.7 1.4e-05 0.22 14 48 .. 1349 1395 .. 1344 1396 .. 0.74 28 ? -5.5 12.4 1 1.6e+04 9 45 .. 1399 1444 .. 1398 1449 .. 0.62 29 ? -13.7 23.4 1 1.6e+04 7 46 .. 1449 1501 .. 1447 1537 .. 0.83 30 ! 23.0 3.2 3.7e-09 6.1e-05 2 36 .. 1545 1578 .. 1544 1585 .. 0.91 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.6e-07 DUF4705 29 LpvAsaGpklppagLsrPss 48 Lp+As+Gp+l+p++L rPss T323215_2 40 LPAASPGPELSPVSLHRPSS 59 9*****************98 PP == domain 2 score: 11.9 bits; conditional E-value: 1.1e-05 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.ppagL 43 gp P+sr+ Lq +l++++l+r s+ ++As +p + ++ +L T323215_2 67 GPYPTSRQSLQ-MRLLPHNSLHRHSSTVTMASLDPAPaSQPSL 108 788********.***********************99765555 PP == domain 3 score: 26.1 bits; conditional E-value: 4.1e-10 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGp 36 PgpA as++pLq +++l +lsrps++L As p T323215_2 119 PGPAHASWQPLQ-AQLLHLGSLSRPSLCLLSASTVP 153 9***********.*******************9755 PP == domain 4 score: 12.9 bits; conditional E-value: 5.5e-06 DUF4705 3 pAPasrrpLqa..........paslqasglsrpsaqLpvAsaGpkl...........ppagLsrPssCL 50 p as++ Lqa p s++ s++ +ps++ pvAs G+ + + L P+sCL T323215_2 153 PTSASQQILQAqylphcgppkPSSQPFSSFYTPSSCHPVASLGQAHasqgpfqaqllSHGNLPWPHSCL 221 5569****************************************9988888888888888888899997 PP == domain 5 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 2 gpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPs 47 g+A as+ p q +++l++ l +p ++L ++s + rP+ T323215_2 195 GQAHASQGPFQ-AQLLSHGNLPWPHSCLSPSSLD---------RPR 230 899********.7777777777777777555433.........333 PP == domain 6 score: 12.4 bits; conditional E-value: 7.6e-06 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 pA asr+pLq +++l++ srp T323215_2 240 PALASRWPLQ-AQLLSQDVISRPK 262 9*********.******9999995 PP == domain 7 score: 15.1 bits; conditional E-value: 1.1e-06 DUF4705 10 pLqapaslqasglsrpsaqLpvAsaGpklp 39 pLq +++l++++ rp ++L As+Gp lp T323215_2 289 PLQ-AQLLPPVSVYRPNLCLMGASPGPALP 317 9**.************************98 PP == domain 8 score: 19.9 bits; conditional E-value: 3.5e-08 DUF4705 22 lsrpsaqLpvAsaGpklppagLsrPs 47 ++ ++qL+++ +Gpklp+++LsrP+ T323215_2 333 FGPVPVQLTATNVGPKLPQVKLSRPA 358 78889********************5 PP == domain 9 score: 15.3 bits; conditional E-value: 9.5e-07 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpkl 38 ++pLq + +l+++g+srps++L +A +G++ T323215_2 372 EQPLQ-ALLLPPRGFSRPSSCLMAAAPGQVS 401 69***.**********************975 PP == domain 10 score: 16.1 bits; conditional E-value: 5.4e-07 DUF4705 9 rpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPss 48 r Lq + ++++s lsr s ++s+ p+l p+gLsrPss T323215_2 458 RTLQ-AKLMPHSTLSRLSISFCASSPSPELTPVGLSRPSS 496 88**.*********************************98 PP == domain 11 score: 1.9 bits; conditional E-value: 0.014 DUF4705 7 srrpLqapaslqasglsrpsa 27 s++pLqa l++ +++ +++ T323215_2 498 SQWPLQAKIVLKSASPGPTPS 518 689999766777777777665 PP == domain 12 score: 6.6 bits; conditional E-value: 0.00049 DUF4705 3 pAPasrrpLqapaslqasglsrpsaqL 29 pA ++++pLq + l++ +++ +s ++ T323215_2 536 PALVCKWPLQEQNCLKSASPGPASCFP 562 9999******99999999999988776 PP == domain 13 score: 14.9 bits; conditional E-value: 1.3e-06 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLp 30 +gpA as++ L+ +++ + +ls+p ++Lp T323215_2 566 TGPASASQQTLH-AQLFPVCCLSSPKLRLP 594 8***********.****************9 PP == domain 14 score: 1.0 bits; conditional E-value: 0.028 DUF4705 18 qasglsrpsaqLpvAsaG.pkl...ppagLsrPssCL 50 ++s+l +s++++ As pk+ p gL+r ssCL T323215_2 601 PSSSLTVASFRPTHASCNlPKCqllPHTGLLRLSSCL 637 56777788888888886656779999**********8 PP == domain 15 score: 10.0 bits; conditional E-value: 4.4e-05 DUF4705 8 rrpLqapaslqasglsrpsaqLpvAsaGpklppagL 43 +p + ++ l+ gl rps+ L+v s+Gp l+ gL T323215_2 638 SWPQR-AQPLPVGGLYRPSLYLTVGSPGPPLSHRGL 672 57777.999**********************98877 PP == domain 16 score: 20.7 bits; conditional E-value: 1.9e-08 DUF4705 2 gpAPasrrpL.qapaslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 gpAPas++pL ++ +lsrps++ ++s+G lpp+gLsrPss+ T323215_2 685 GPAPASQWPL*A--KPVPQGSLSRPSVCCFASSPGSGLPPVGLSRPSSS 731 9********995..4689999**************************97 PP == domain 17 score: -1.7 bits; conditional E-value: 0.19 DUF4705 7 srrpLqapa 15 srrpLq ++ T323215_2 732 SRRPLQ-AQ 739 79****.66 PP == domain 18 score: 10.4 bits; conditional E-value: 3.2e-05 DUF4705 1 PgpAPasrrpLqapa 15 PgpAPasr pLqa + T323215_2 747 PGPAPASRCPLQA-Q 760 9***********4.4 PP == domain 19 score: 21.3 bits; conditional E-value: 1.3e-08 DUF4705 1 PgpAPasrrpLqa.............paslqasglsrpsaqLpvAsaGpklp 39 PgpAPasrrpLq pas+++ + +ps++Lp+A++ lp T323215_2 768 PGPAPASRRPLQVqkflesaspgpapPASQRPL-SAQPSSCLPAAFPASCLP 818 9*******************************9.89**********876666 PP == domain 20 score: 24.6 bits; conditional E-value: 1.2e-09 DUF4705 1 PgpAPasrrpLqa.................................pa.slqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gpA as+r L+a p + +++glsrps+ Lp+Asa+p++p++gLsrP+++L T323215_2 822 TGPASASQRTLHAqlalaslrppkskapasrplwqaqlppasglfrPMgLIPHNGLSRPSFSLPAASADPEPPQVGLSRPTCSL 905 8*********************************************6515699*****************************98 PP == domain 21 score: 9.5 bits; conditional E-value: 6.3e-05 DUF4705 29 LpvAsaGpklppagLsrPssCL 50 Lp++s+Gp lpp+ srP +CL T323215_2 905 LPASSPGPALPPGCVSRPDCCL 926 9********************9 PP == domain 22 score: 21.6 bits; conditional E-value: 1.1e-08 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++a L +A +Gp+lp+a+L rP+s L T323215_2 926 LPTTSLDSAPAHLLAALVGPQLPQAKLPRPRSGL 959 6889****************************87 PP == domain 23 score: 37.8 bits; conditional E-value: 9.1e-14 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpkl.............ppagLsrPssCL 50 Pg+APa+r++Lqap+ l+++g+s+ps++Lpv+saGp l pa++ rPss+L T323215_2 964 PGSAPALRWRLQAPNGLRSVGSSTPSLGLPVTSAGPALaptaasrgqvpacLPAARVRPSSSL 1026 9*************************************7777777666666456777777765 PP == domain 24 score: -3.6 bits; conditional E-value: 0.75 DUF4705 7 srrpLqa...................paslqasglsr 24 s+rpL p++l +g s T323215_2 1064 SHRPLPC*ersa*apcltlaprltlaPPTLTKVGVSP 1100 5566544555555555555555555566666666553 PP == domain 25 score: -1.8 bits; conditional E-value: 0.22 DUF4705 4 APasrrpLq 12 A as++pL T323215_2 1138 ALASHWPLP 1146 89*****94 PP == domain 26 score: 3.2 bits; conditional E-value: 0.006 DUF4705 8 rrpLqapaslqasglsrpsa 27 rpLq + ++++ ls ps+ T323215_2 1290 ARPLQ-THLQPPGVLSGPSS 1308 69***.99999999999987 PP == domain 27 score: 11.6 bits; conditional E-value: 1.4e-05 DUF4705 14 paslqasglsrpsaqLpvAsaGpkl............ppagLsrPss 48 ++ ++ gl r s+++p+As+Gpk+ pp+gL rP+s T323215_2 1349 AQVRPHGGLARLSSCPPMASPGPKRppvggll*aqlgPPGGLCRPKS 1395 555699*******************6666666666666666666666 PP == domain 28 score: -5.5 bits; conditional E-value: 1 DUF4705 9 rpLqapaslqasgl.......srpsaqLp.vAsaGpkl..ppagLsr 45 rpLq +++++ +l srp+++++ +As++p +p+gLsr T323215_2 1399 RPLQ-VQLQPPGSLcrpklssSRPGSGPGrAASWPPWAqlRPLGLSR 1444 7888.666666654222222277778886577888865558888888 PP == domain 29 score: -13.7 bits; conditional E-value: 1 DUF4705 7 srrpLqa.....pasl....qasglsrpsaqLpvAsaGpkl....ppagLsrP 46 s +pLqa p l +a g+ +ps + ++++G + pp+gL rP T323215_2 1449 SSQPLQAqlllpPSGLfwpsPAHGSQQPSQAPLLTFGGLFRprt*PPVGLCRP 1501 57899988888633334333677888999999999999888888999999998 PP == domain 30 score: 23.0 bits; conditional E-value: 3.7e-09 DUF4705 2 gpAPasrrpL..qapaslqasglsrpsaqLpvAsaGp 36 gpAPa+++pL q + +++glsrp++ Lp+A+++ T323215_2 1545 GPAPACQWPL*aQ---LIPHNGLSRPRFSLPAAFWPL 1578 9********9966...******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1647 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.53 # Mc/sec: 8890.16 // Query: T323215_3 [L=1646] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-50 169.5 402.0 2.7e-17 62.6 8.0 36.1 34 DUF4705 Domain of unknown function (DUF4705) Domain annotation for each model (and alignments): >> DUF4705 Domain of unknown function (DUF4705) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 1.0 0.00017 2.9 4 24 .. 37 57 .. 36 73 .. 0.90 2 ? -0.6 2.1 0.091 1.5e+03 1 25 [. 87 110 .. 81 110 .. 0.74 3 ! 10.2 4.5 3.9e-05 0.63 7 36 .. 114 142 .. 112 144 .. 0.92 4 ! 23.5 3.8 2.7e-09 4.4e-05 1 31 [. 140 169 .. 140 182 .. 0.88 5 ! 16.5 2.8 3.9e-07 0.0064 1 35 [. 183 216 .. 183 225 .. 0.90 6 ! 44.4 11.0 8e-16 1.3e-11 1 50 [] 227 275 .. 227 275 .. 0.99 7 ! 23.4 0.8 2.8e-09 4.5e-05 28 50 .] 274 296 .. 273 296 .. 0.97 8 ? -2.1 13.3 0.26 4.3e+03 20 41 .. 372 398 .. 301 401 .. 0.88 9 ? 1.1 3.4 0.027 4.4e+02 5 26 .. 402 422 .. 402 423 .. 0.94 10 ? -3.5 0.1 0.72 1.2e+04 38 47 .. 454 463 .. 446 463 .. 0.60 11 ! 5.0 1.0 0.0016 25 28 47 .. 486 505 .. 478 509 .. 0.85 12 ? 2.0 1.2 0.013 2.2e+02 7 27 .. 508 527 .. 506 532 .. 0.91 13 ? -0.1 0.2 0.062 1e+03 7 24 .. 529 545 .. 527 548 .. 0.87 14 ! 10.1 9.0 4.2e-05 0.68 6 38 .. 549 591 .. 546 597 .. 0.89 15 ! 10.7 6.3 2.6e-05 0.42 1 33 [. 599 630 .. 599 630 .. 0.95 16 ! 3.8 2.9 0.0037 60 19 43 .. 637 662 .. 634 664 .. 0.80 17 ! 15.7 13.2 7.4e-07 0.012 1 38 [. 652 709 .. 652 718 .. 0.87 18 ? 2.4 14.1 0.01 1.7e+02 1 49 [. 705 762 .. 705 763 .. 0.95 19 ? -0.4 8.3 0.075 1.2e+03 7 41 .. 784 816 .. 782 816 .. 0.86 20 ? 0.7 11.2 0.034 5.6e+02 3 26 .. 813 835 .. 802 835 .. 0.92 21 ! 15.5 1.9 8.1e-07 0.013 14 36 .. 846 868 .. 840 873 .. 0.91 22 ! 2.6 0.1 0.009 1.5e+02 27 39 .. 871 883 .. 869 886 .. 0.89 23 ! 5.8 12.1 0.00091 15 1 38 [. 878 924 .. 878 932 .. 0.85 24 ! 16.4 2.3 4.4e-07 0.0071 1 26 [. 953 977 .. 953 979 .. 0.95 25 ? -8.8 14.0 1 1.6e+04 1 39 [. 986 1021 .. 986 1036 .. 0.61 26 ? -3.5 3.1 0.71 1.1e+04 6 14 .. 1079 1105 .. 1074 1139 .. 0.55 27 ! 13.5 9.9 3.6e-06 0.059 17 50 .] 1287 1320 .. 1265 1320 .. 0.85 28 ! 27.9 3.3 1.1e-10 1.8e-06 17 50 .] 1320 1353 .. 1319 1353 .. 0.96 29 ! 62.6 8.0 1.7e-21 2.7e-17 1 50 [] 1358 1407 .. 1358 1407 .. 0.99 30 ! 12.5 0.9 7.3e-06 0.12 25 44 .. 1403 1422 .. 1402 1423 .. 0.91 31 ! 10.9 5.0 2.2e-05 0.36 24 49 .. 1434 1458 .. 1428 1459 .. 0.80 32 ! 4.2 2.1 0.0028 46 26 39 .. 1457 1472 .. 1456 1481 .. 0.73 33 ! 2.7 0.7 0.0081 1.3e+02 29 50 .] 1483 1505 .. 1483 1505 .. 0.86 34 ! 20.7 14.6 1.9e-08 0.00032 1 39 [. 1510 1570 .. 1510 1577 .. 0.95 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00017 DUF4705 4 APasrrpLqapaslqasglsr 24 AP+sr+pLqa + lq+ + + T323215_3 37 APTSRQPLQAQNFLQSASTDQ 57 9********999999987655 PP == domain 2 score: -0.6 bits; conditional E-value: 0.091 DUF4705 1 PgpAPasrrpL..qapaslqasglsrp 25 +g AP +++pL q +l++s lsrp T323215_3 87 TGTAPPLQWPL*tQ---LLPPSLLSRP 110 68899999998644...6666666665 PP == domain 3 score: 10.2 bits; conditional E-value: 3.9e-05 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGp 36 s rp q ++++ +lsrps++ +As+Gp T323215_3 114 SSRPHQ-AQLMLLGSLSRPSSCILAASPGP 142 678999.**********************9 PP == domain 4 score: 23.5 bits; conditional E-value: 2.7e-09 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpv 31 PgpA as +pLq ++ l++s++ rps +L+v T323215_3 140 PGPASASCQPLQ-SQHLPHSRFFRPSICLTV 169 9***********.*****************9 PP == domain 5 score: 16.5 bits; conditional E-value: 3.9e-07 DUF4705 1 PgpAPasrrpL.qapaslqasglsrpsaqLpvAsaG 35 + pAPa ++pL ++++ glsrp ++L ++++G T323215_3 183 THPAPATQWPL*A--KLMPHKGLSRPNFCLMATFPG 216 57*******9996..7*******************9 PP == domain 6 score: 44.4 bits; conditional E-value: 8e-16 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 +gp+ as++p + ++l++ glsrps+++ +s+Gpklp+++Ls+P +CL T323215_3 227 TGPGLASHWPVY-IQLLPHGGLSRPSSCPRTSSPGPKLPQVSLSSPNCCL 275 8***********.************************************9 PP == domain 7 score: 23.4 bits; conditional E-value: 2.8e-09 DUF4705 28 qLpvAsaGpklppagLsrPssCL 50 +L vA Gpk p++ LsrPssCL T323215_3 274 CLLVAYEGPKSPQVDLSRPSSCL 296 9*********************9 PP == domain 8 score: -2.1 bits; conditional E-value: 0.26 DUF4705 20 sglsrpsaqLpvAsaGpkl.....ppa 41 ++l rp ++Lp As+Gp l p+a T323215_3 372 NSLCRPCSCLPGASPGPALaswrlPQA 398 5799*************9965555555 PP == domain 9 score: 1.1 bits; conditional E-value: 0.027 DUF4705 5 PasrrpLqapaslqasglsrps 26 Pa+++p q +++ ++sg+ rp T323215_3 402 PACQQPQQ-AQLFPHSGPFRPN 422 9*******.*********9996 PP == domain 10 score: -3.5 bits; conditional E-value: 0.72 DUF4705 38 lppagLsrPs 47 l+ +gL rPs T323215_3 454 LSTVGLYRPS 463 4556666664 PP == domain 11 score: 5.0 bits; conditional E-value: 0.0016 DUF4705 28 qLpvAsaGpklppagLsrPs 47 L +As+++ lpp gL rP+ T323215_3 486 LLQLASPDQALPPSGLYRPK 505 6889***************6 PP == domain 12 score: 2.0 bits; conditional E-value: 0.013 DUF4705 7 srrpLqapaslqasglsrpsa 27 s +pLq ++l+ g+ rp + T323215_3 508 SSQPLQ-GQLLATGGFCRPKS 527 689***.***********986 PP == domain 13 score: -0.1 bits; conditional E-value: 0.062 DUF4705 7 srrpLqapaslqasglsr 24 s +pL+ +++l+ sgl r T323215_3 529 SSQPLH-TQLLSVSGLCR 545 78****.*****999866 PP == domain 14 score: 10.1 bits; conditional E-value: 4.2e-05 DUF4705 6 asrrpLqa..........paslqasglsrpsaqLpvAsaGpkl 38 as rpLqa ++ l++s+ls ps+ L +As+ +++ T323215_3 549 ASSRPLQAqppasrghvqAQPLPHSRLSMPSSSLSAASPVQSC 591 788999999999999999********************99988 PP == domain 15 score: 10.7 bits; conditional E-value: 2.6e-05 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAs 33 +gpAP sr+pL +++++ + s++L++As T323215_3 599 TGPAPPSRWPLF-AQLMPLATCPSVSSCLTLAS 630 8***********.*****9999999******98 PP == domain 16 score: 3.8 bits; conditional E-value: 0.0037 DUF4705 19 asglsrpsaqLpvAsaGpkl.ppagL 43 ++gl ps +L +As Gp ++ +L T323215_3 637 SRGLNGPSPCLSAASTGPAStSQWAL 662 789999999******99976566555 PP == domain 17 score: 15.7 bits; conditional E-value: 7.4e-07 DUF4705 1 PgpAPasrrpLqa....................paslqasglsrpsaqLpvAsaGpkl 38 +gpA +s++ Lqa +++l++sgl rps +L +A++G + T323215_3 652 TGPASTSQWALQAhlfltvaswgnaprsreplrAQLLPPSGLCRPSPCLRAAFPGLAF 709 688888888888888888888888888888888**********************876 PP == domain 18 score: 2.4 bits; conditional E-value: 0.01 DUF4705 1 PgpAPasrrpLqa.........paslqasglsrpsaqLpvAsaGpklppagLsrPssC 49 Pg A a pLqa + l++ gl rp++ +G+ lpp++L rP+s+ T323215_3 705 PGLAFAALHPLQAldflqsaspGPALPPGGLCRPRLLSSRPVQGQLLPPGALCRPKSS 762 89999999*************9899******************************997 PP == domain 19 score: -0.4 bits; conditional E-value: 0.075 DUF4705 7 srrpLqapaslqasglsrpsaqLpvAsaGpklppa 41 s +pLqa +l++sgl rps + As+ p++ppa T323215_3 784 SSQPLQAQLLLPPSGLFRPS--PAHASRRPSRPPA 816 679***77789********8..8889999999886 PP == domain 20 score: 0.7 bits; conditional E-value: 0.034 DUF4705 3 pAPasrrpLqapaslqasglsrps 26 + Pasrrp q ++ +++sgls+ps T323215_3 813 RPPASRRPAQ-AQPQPHSGLSTPS 835 669*******.************7 PP == domain 21 score: 15.5 bits; conditional E-value: 8.1e-07 DUF4705 14 paslqasglsrpsaqLpvAsaGp 36 p +l+ +++rps++LpvAs Gp T323215_3 846 PKLLPLGRFGRPSSRLPVASSGP 868 8999******************9 PP == domain 22 score: 2.6 bits; conditional E-value: 0.009 DUF4705 27 aqLpvAsaGpklp 39 ++L+ A++Gp++p T323215_3 871 SFLTTAFPGPVFP 883 79*********97 PP == domain 23 score: 5.8 bits; conditional E-value: 0.00091 DUF4705 1 PgpAPasrrpLqa........paslq.asglsrpsaqLpvAsaGpkl 38 Pgp +rrpL++ p+ l+ ++++ r+ ++Lp+As+Gp+ T323215_3 878 PGPVFPFRRPLRTqnllksasPDPLAaSRRPLRAQLFLPAASPGPTA 924 7888889**************766651678***************86 PP == domain 24 score: 16.4 bits; conditional E-value: 4.4e-07 DUF4705 1 PgpAPasrrpLqapaslqasglsrps 26 Pgp+ asr+pLq ++l++ g srp T323215_3 953 PGPGQASRWPLQ-DQLLPSDGVSRPQ 977 9***********.9***********7 PP == domain 25 score: -8.8 bits; conditional E-value: 1 DUF4705 1 PgpAPasrr.pLqapaslqasglsrpsaqLpvAsaGpklp 39 P+pA+as r pLq +++ +++ p+a +As+ p + T323215_3 986 PRPAWAS-R*PLQ-AQLSPPR--RPPGAKSLPASRQPACG 1021 8999998.77799.5555555..33444444445444442 PP == domain 26 score: -3.5 bits; conditional E-value: 0.71 DUF4705 6 asrrpLqa..................p 14 as++pL + T323215_3 1079 ASHWPLAShwplpr*qrsv*apcltlA 1105 555555334444445556665555552 PP == domain 27 score: 13.5 bits; conditional E-value: 3.6e-06 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 q glsrp Lp++s+Gp lpp+ srP s L T323215_3 1287 RQRPGLSRPTCNLPASSPGPALPPGCVSRPDSGL 1320 45568**************************987 PP == domain 28 score: 27.9 bits; conditional E-value: 1.1e-10 DUF4705 17 lqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 l+ ++l +++aqLpvA +Gp+lp+a+L rP+s L T323215_3 1320 LPTTSLDSAPAQLPVALVGPQLPEAKLPRPRSGL 1353 8999****************************87 PP == domain 29 score: 62.6 bits; conditional E-value: 1.7e-21 DUF4705 1 PgpAPasrrpLqapaslqasglsrpsaqLpvAsaGpklppagLsrPssCL 50 Pg+APa+r++Lq p+ l+++g+srps++Lp+AsaGp++p++gLsr ss+L T323215_3 1358 PGSAPALRWHLQVPNGLRSVGSSRPSLGLPAASAGPNRPEVGLSRSSSSL 1407 9***********************************************98 PP == domain 30 score: 12.5 bits; conditional E-value: 7.3e-06 DUF4705 25 psaqLpvAsaGpklppagLs 44 s+ Lp+AsaG ++p++gL+ T323215_3 1403 SSSSLPAASAGLSCPQVGLE 1422 6899**************96 PP == domain 31 score: 10.9 bits; conditional E-value: 2.2e-05 DUF4705 24 rpsaqLpvAsaGpklppagLsrPssC 49 ps+ +As+G klp ++LsrPss+ T323215_3 1434 GPSSV-LLASPGAKLPRVSLSRPSSS 1458 45555.579***************97 PP == domain 32 score: 4.2 bits; conditional E-value: 0.0028 DUF4705 26 saqLpvAsaGpkl..p 39 s++LpvAs Gp T323215_3 1457 SSCLPVASFGPAQlmA 1472 89*********86443 PP == domain 33 score: 2.7 bits; conditional E-value: 0.0081 DUF4705 29 LpvAsaGpkl.ppagLsrPssCL 50 L vAs Gp+l + + P+sCL T323215_3 1483 LLVASSGPELdLQSAFAGPASCL 1505 789*******8677888999998 PP == domain 34 score: 20.7 bits; conditional E-value: 1.9e-08 DUF4705 1 PgpAPasrrpLqa......................paslqasglsrpsaqLpvAsaGpklp 39 +gpA as+r L+a +++l+asgl rps++L+ A++Gp++p T323215_3 1510 TGPASASQRTLHAqlalaslrppqskapafrplwqAQLLPASGLFRPSSFLTTAFPGPVFP 1570 8**********************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1646 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.54 # Mc/sec: 8720.23 // Query: T327770_1 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.004 17.1 2.2 0.006 16.5 2.2 1.3 1 Eapp_C E2F-associated phosphoprotein 0.0051 16.3 27.5 0.009 15.5 27.5 1.3 1 SR-25 Nuclear RNA-splicing-associated protein ------ inclusion threshold ------ 0.061 12.6 6.1 0.09 12.0 6.1 1.1 1 DUF4820 Domain of unknown function (DUF4820) 0.77 10.1 11.7 1.1 9.6 11.7 1.1 1 RNA_pol_Rpc4 RNA polymerase III RPC4 4 6.0 19.8 5.5 5.5 19.8 1.1 1 NPR3 Nitrogen Permease regulator of amino acid tra Domain annotation for each model (and alignments): >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 2.2 1.8e-06 0.006 73 112 .. 183 222 .. 174 299 .. 0.58 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 1.8e-06 Eapp_C 73 vlkykeaesekkkkkkkkkkkkeekeeeaeaeeaeeeeee 112 + ++k+++ +kkkkkkkkkkkk++k+++++++++++++++ T327770_1 183 TEREKKKKRKKKKKKKKKKKKKKKKKKNKKKKRKRKRKRK 222 2222222222222222222222222222222222222111 PP >> SR-25 Nuclear RNA-splicing-associated protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 27.5 2.8e-06 0.009 86 124 .. 184 222 .. 166 241 .. 0.45 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 2.8e-06 SR-25 86 sddrkkrgkkkdkkkkkkkkkkkkkkekkkakekakaea 124 + ++kk+ kkk+kkkkkkkkkkkkkk+kkk+++++++++ T327770_1 184 EREKKKKRKKKKKKKKKKKKKKKKKKNKKKKRKRKRKRK 222 222223223333333333333333333333333222222 PP >> DUF4820 Domain of unknown function (DUF4820) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 6.1 2.7e-05 0.09 132 199 .. 148 219 .. 145 237 .. 0.45 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.7e-05 DUF4820 132 kkallkkirltLstliC....srpgrsipvsseldnsartlterksekesaesseskkrnkeerdaeseees 199 k++l++++l+ s +C p+ s+ e++++ + ++rk++k++++++++kk++k++++++++ + T327770_1 148 TKTWLSSLKLPSSHWLCkvccPLPSGSPVCVCERETEREKKKKRKKKKKKKKKKKKKKKKKKNKKKKRKRKR 219 699*****9987777775433455555543333333333333333333322222222222222222222221 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 11.7 0.00034 1.1 32 91 .. 181 240 .. 170 242 .. 0.61 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00034 RNA_pol_Rpc4 32 sqsaekakaeeeakaekesgaeaeekkekkkeskkkkkkkskaaklkslpeGviGkLlvh 91 +++ ++k++ ++k++k++++++++kk+k+k++k+k+k+k k+ ++k+ + G+ G Ll + T327770_1 181 RETEREKKKKRKKKKKKKKKKKKKKKKKKNKKKKRKRKRKRKRGTEKERERGREGDLLCY 240 344444444445555555555555555555555666666666777777778999998765 PP >> NPR3 Nitrogen Permease regulator of amino acid transport activity 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 19.8 0.0017 5.5 33 88 .. 173 228 .. 172 237 .. 0.52 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0017 NPR3 33 GlPvhvdedgkwrkskkkkkkskrkrssrskekkskesskksesssksesseekks 88 G Pv+v e ++ r++kkk+kk+k+k+++++k+kk+k+++kk+ ++++++++ ++k+ T327770_1 173 GSPVCVCERETEREKKKKRKKKKKKKKKKKKKKKKKKNKKKKRKRKRKRKRGTEKE 228 78********9999977665555444444444443333333333333332222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2810 (0.172329); expected 326.1 (0.02) Passed bias filter: 930 (0.0570342); expected 326.1 (0.02) Passed Vit filter: 377 (0.0231203); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.60 # Mc/sec: 2565.21 // Query: T327770_2 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 699 (0.0428677); expected 326.1 (0.02) Passed bias filter: 246 (0.0150865); expected 326.1 (0.02) Passed Vit filter: 66 (0.00404759); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 2959.86 // Query: T327770_3 [L=538] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00047 20.0 8.6 0.00065 19.6 8.6 1.1 1 Spore_coat_CotO Spore coat protein CotO 0.0012 18.9 3.1 0.0017 18.4 3.1 1.1 1 CPSF100_C Cleavage and polyadenylation factor 2 C-term ------ inclusion threshold ------ 0.013 14.9 4.9 0.018 14.4 4.9 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) 0.023 12.9 16.2 0.03 12.5 16.2 1.1 1 CDC45 CDC45-like protein 0.023 14.0 20.7 0.033 13.5 20.7 1.1 1 SDA1 SDA1 0.037 14.4 3.5 0.056 13.8 3.5 1.2 1 RNA_pol_Rpc4 RNA polymerase III RPC4 0.057 12.0 4.7 0.082 11.5 4.7 1.1 1 Presenilin Presenilin 0.089 12.8 0.5 0.13 12.3 0.5 1.2 1 DDHD DDHD domain 0.095 13.1 8.2 0.15 12.5 8.2 1.2 1 TCP TCP family transcription factor 0.096 11.5 2.8 0.13 11.1 2.8 1.1 1 DUF913 Domain of Unknown Function (DUF913) 0.17 9.9 4.6 0.23 9.5 4.6 1.1 1 RAB3GAP2_C Rab3 GTPase-activating protein regulatory su 1 8.4 12.0 1.5 7.9 12.0 1.1 1 TRAP_alpha Translocon-associated protein (TRAP), alpha 1.4 8.0 19.9 1.9 7.6 19.9 1.1 1 BUD22 BUD22 3.8 7.1 5.6 5.6 6.5 5.6 1.2 1 EIIBC-GUT_N Sorbitol phosphotransferase enzyme II N-term 4.2 7.8 12.0 6.1 7.3 12.0 1.2 1 DUF3391 Domain of unknown function (DUF3391) 4.9 6.8 26.0 8.8 6.0 26.0 1.4 1 DUF4637 Domain of unknown function (DUF4637) Domain annotation for each model (and alignments): >> Spore_coat_CotO Spore coat protein CotO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 8.6 6.4e-07 0.00065 65 171 .. 187 296 .. 180 309 .. 0.59 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 6.4e-07 Spore_coat_CotO 65 kkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetvea.ekPeqearkP.....prrkrfkemtveEkidyLiklphnlPkvkclieteek 152 +++e +e+eeee++eeee++eeeeq+eeeee++e e ++ e+e ++ pr k + + + + +L + + P + +t ++ T327770_3 187 EEEE----EEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERnRERERERERGrlamlPRLKCSHVIIAHCSLKFLGSSDPVAPASEVTRNTGTH 276 2222....222222222222222222222222222221111123344444447788899999999999************************** PP Spore_coat_CotO 153 tYrgviler.redivsiktf 171 Y i + d+vs+ T327770_3 277 HYAPLIFNFfCRDSVSLCCP 296 **999999877888887655 PP >> CPSF100_C Cleavage and polyadenylation factor 2 C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 3.1 1.7e-06 0.0017 37 95 .. 186 245 .. 151 258 .. 0.56 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.7e-06 CPSF100_C 37 eeeekeeeeeeeeeeeeeeeankkqkl.aeksekeaseeeseekkeslptldvlpankas 95 eeee+eeeeeeeeeeeeeee++++q++ +e++e+e+++++++e++++ +l +lp k s T327770_3 186 EEEEEEEEEEEEEEEEEEEEEEEEQEEeEEEEEEEEERNRERERERERGRLAMLPRLKCS 245 223333333333333333333333333123344444444444444445588888877766 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 4.9 1.8e-05 0.018 24 67 .. 187 226 .. 171 266 .. 0.48 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.8e-05 SpoIIP 24 aeesekeekekeeeeeeekeeeeeeeikkeekeeekekee.dsee 67 + ee+e+eeeeeee+eeeeeee+++ee+eee+e+ee +++e T327770_3 187 E-----EEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEeRNRE 226 1.....111111111111111111111111111111111111111 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 16.2 3e-05 0.03 140 190 .. 186 232 .. 178 273 .. 0.44 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 3e-05 CDC45 140 eedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrr 190 ee+++eeeeeeeee+eeeeee+e e +++++++eeeeee+++er+r+r+ T327770_3 186 EEEEEEEEEEEEEEEEEEEEEEE-E---QEEEEEEEEEEEERNRERERERE 232 11111111111111111111111.1...11111111111111112222222 PP >> SDA1 SDA1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 20.7 3.2e-05 0.033 129 177 .. 185 227 .. 180 270 .. 0.44 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.2e-05 SDA1 129 ieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekeke 177 ee++ eeeeeeee+ee+eeeeeeee+eeeeeeeeeeee ++++ T327770_3 185 REEEE------EEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNRER 227 11111......11111111111111111111111111111111111111 PP >> RNA_pol_Rpc4 RNA polymerase III RPC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 3.5 5.5e-05 0.056 24 69 .. 186 228 .. 157 245 .. 0.40 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5.5e-05 RNA_pol_Rpc4 24 eddkseaksqsaekakaeeeakaekesgaeaeekkekkkeskkkkk 69 e++++e++++++e +eee+++e+e+++e+ee++e+++e +++++ T327770_3 186 EEEEEEEEEEEEE---EEEEEEEEEEEQEEEEEEEEEEEERNRERE 228 1111111111111...111111111111111111222222222222 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 4.7 8e-05 0.082 274 310 .. 189 225 .. 150 249 .. 0.49 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 8e-05 Presenilin 274 eeeeeeesaeaeseaeesseekeeeessesseeeeee 310 eeeeeee++e+e+e+ee++ee+eeee++e++eee+++ T327770_3 189 EEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNR 225 0000000000000000000000000000000000000 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.5 0.00013 0.13 134 171 .. 188 225 .. 153 286 .. 0.58 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00013 DDHD 134 laesqksherssesskesqeskaaesssasssaksssa 171 ++e+++++e+++e+++e++e++++e++++++++++ + T327770_3 188 EEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNR 225 11111111111111111111111111111111111111 PP >> TCP TCP family transcription factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 8.2 0.00015 0.15 102 149 .. 187 234 .. 154 239 .. 0.60 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.00015 TCP 102 skkkaseekskkekskskkskkssklsassskakesrekarerarert 149 ++++++ee++++e++++++++++++ + ++++++e+r++ rer+rer T327770_3 187 EEEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNRERERERERG 234 222233333333333334444444555556666677777777777765 PP >> DUF913 Domain of Unknown Function (DUF913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 2.8 0.00013 0.13 273 309 .. 188 224 .. 154 257 .. 0.48 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00013 DUF913 273 sssssssetkeeekssededvemedaeaetesesdee 309 +++++++e++eee+++e+e++e+e++e+e+e+e++ + T327770_3 188 EEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERN 224 1111111111111111111111111111111111111 PP >> RAB3GAP2_C Rab3 GTPase-activating protein regulatory subunit C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 4.6 0.00023 0.23 189 258 .. 177 256 .. 155 259 .. 0.45 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00023 RAB3GAP2_C 189 v..........kksleekkkeeeeeqelskekelaaeekeeakeekeeleqvlellsllrrrFPlSLesdvLlahlcwey 258 ++++ee+++eeeee+e+++e+e+++ee+ee++ee+ + e+ e+ + +++P s v+ ah+++++ T327770_3 177 Cv*erdrereeEEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNRERERERERGRLAMLPRLKCSHVIIAHCSLKF 256 15655544322111111111111111111111112222222222222222333333345567888888888888888776 PP >> TRAP_alpha Translocon-associated protein (TRAP), alpha subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 12.0 0.0014 1.5 30 68 .. 186 224 .. 174 257 .. 0.50 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0014 TRAP_alpha 30 eedevddelvdveaedeeveeeeeeeeeeeeeeeedeee 68 ee+e ++e ++ e+e+ee+eeeee+eeeeeeeeee+e++ T327770_3 186 EEEEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERN 224 222222221222222222222222222222233333332 PP >> BUD22 BUD22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 19.9 0.0018 1.9 158 212 .. 186 232 .. 180 261 .. 0.39 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0018 BUD22 158 kkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeae 212 ++++eeee ++eee+e++e+ +ee+e++eeeeee+e++e e+++e+e T327770_3 186 EEEEEEEE----EEEEEEEEEEE--EEEEEQEEEEEEEEEEEERN--RERERERE 232 11111111....11111111111..11111111111111111111..12222333 PP >> EIIBC-GUT_N Sorbitol phosphotransferase enzyme II N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 5.6 0.0055 5.6 126 154 .. 193 219 .. 163 241 .. 0.47 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0055 EIIBC-GUT_N 126 eeeeeekeeeeekekkketkkkiteqeek 154 eeeeee+eeeee+e +e++++++e+ee+ T327770_3 193 EEEEEEEEEEEEEE--EEEQEEEEEEEEE 219 11111111111111..1111111111111 PP >> DUF3391 Domain of unknown function (DUF3391) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 12.0 0.006 6.1 61 104 .. 187 231 .. 180 273 .. 0.53 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.006 DUF3391 61 eesegl.dvaaaeaaeeekraeesaeleeekqerperleaeaeel 104 ee+e++ + +++e++eee+++ee++e+eee++e++er++++++e T327770_3 187 EEEEEEeEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNRERERER 231 222222022222222222233333333333333333333333332 PP >> DUF4637 Domain of unknown function (DUF4637) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 26.0 0.0087 8.8 10 66 .. 184 240 .. 181 255 .. 0.73 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0087 DUF4637 10 eleeleareaeeeeeeeeseeedeerdeeesaaekeeesreaeeaegkekgsvsysP 66 e ee e++e+eeeeeeee+eee+ee +eee+ e+eee+r+ e + +e+g ++ P T327770_3 184 EREEEEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEERNRERERERERGRLAMLP 240 667777777777777777777777777777777777777877777777888877766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (538 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1803 (0.110573); expected 326.1 (0.02) Passed bias filter: 767 (0.0470379); expected 326.1 (0.02) Passed Vit filter: 365 (0.0223844); expected 16.3 (0.001) Passed Fwd filter: 76 (0.00466086); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.59 # Mc/sec: 2608.69 // Query: T013932_1 [L=2477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-27 94.2 0.2 6.4e-27 93.1 0.2 1.6 1 Transposase_1 Transposase (partial DDE domain) 2e-06 27.4 0.2 3.1e-06 26.8 0.2 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.1 0.2 7.8e-31 6.4e-27 9 80 .] 2156 2226 .. 2155 2226 .. 0.96 Alignments for each domain: == domain 1 score: 93.1 bits; conditional E-value: 7.8e-31 Transposase_1 9 aqWldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 aqWld++ +pk++pkp+l qkkvm VwWsa+gli+y fl pgetitse+Yaqq +++++klq +++a+vnr T013932_1 2156 AQWLDQE-APKHFPKPNLDQKKVMFAVWWSAAGLIHYCFLTPGETITSEKYAQQFKEMNRKLQPLQSAMVNR 2226 79*9986.68************************************************************97 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.2 3.8e-10 3.1e-06 49 140 .. 958 1052 .. 956 1062 .. 0.86 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 3.8e-10 DDE_1 49 rkawltssifeeWLekvfdkrve.kaekrk....vlLllddsrshe.tvelsecelqniklvflPasstsll.qPldqgvvselKarYrrqllkalla 139 +++ + + +f W++++f+++ve k+k +lLl+d+ ++ + + + +++i++vf+Pa+ +s+l + d+gv+ ++K++Y r++l+++ T013932_1 958 QQSLMKALLFILWFTEYFKPTVEtYCFKKKipf*ILLLIDNEAGNPrALTE---IYKKINVVFMPANKSSIL*H-TDKGVIFTFKSYYLRKTLHKATT 1051 56778889999************6555666556669********9977777...8************9999888.6*****************99876 PP DDE_1 140 l 140 + T013932_1 1052 A 1052 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.56 # Mc/sec: 12654.06 // Query: T013932_2 [L=2477] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-06 28.1 0.1 3.1e-06 27.0 0.1 1.5 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain 0.00096 18.6 0.1 0.002 17.6 0.0 1.6 2 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.1 3.7e-10 3.1e-06 11 58 .. 788 840 .. 786 841 .. 0.96 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 3.7e-10 HHHHHC.CT---SCHHHHHHHHHHH.....HHSSSCT-TT-S--CHHHHHHHH CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela.....slaadpkepdfkaSkgWldrFkk 58 Wi++++ ++p++++li++k + l+ ++++++ +++fka gWl rFk+ T013932_2 788 WIENQTSPNIPLSQSLIQRKVLTLFnsvkaERGEETAGEKFKATRGWLMRFKE 840 ******************************99999****************95 PP >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 2.4e-07 0.002 1 46 [. 911 955 .. 911 955 .. 0.93 2 ? -3.5 0.1 0.74 6.1e+03 66 101 .. 1978 2015 .. 1974 2016 .. 0.79 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 2.4e-07 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldveyk 46 k+rlt+ l+anaag kLkp++i +++sp a kn + k +l+v yk T013932_2 911 KNRLTLSLGANAAGHLKLKPMLINQSESPWALKN-YAKPTLPVPYK 955 679*******************************.88888888885 PP == domain 2 score: -3.5 bits; conditional E-value: 0.74 DDE_1 66 fdkrve...kaekrkvlLllddsrshetvelsecelqni 101 f+k +e k++k +v+ l + +h++ve +++ +n+ T013932_2 1978 FEKMMEmmlKKKKIRVIFLFEVKMGHKAVET-TRKINNT 2015 6777777778999999999999999999998.6666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2477 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 340 (0.0208512); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 13122.73 // Query: T013932_3 [L=2476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2476 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 443 (0.0271679); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 12648.96 // Query: T223313_1 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 302 (0.0185208); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.53 # Mc/sec: 10131.66 // Query: T223313_2 [L=1877] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1877 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 257 (0.0157611); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 9944.03 // Query: T223313_3 [L=1876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1876 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 9758.03 // Query: T068785_1 [L=3194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 23 (0.00141052); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.59 # Mc/sec: 15487.27 // Query: T068785_2 [L=3194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 637 (0.0390654); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 83 (0.00509015); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.62 # Mc/sec: 14737.89 // Query: T068785_3 [L=3194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.081 12.9 3.4 0.17 11.9 3.4 1.5 1 Eapp_C E2F-associated phosphoprotein 0.094 12.6 27.4 0.18 11.7 27.4 1.3 1 DUF2011 Fungal protein of unknown function (DUF2011) 0.11 12.2 15.5 0.17 11.5 15.5 1.2 1 Coilin_N Coilin N-terminus 0.28 10.8 15.3 0.49 10.1 15.3 1.2 1 RR_TM4-6 Ryanodine Receptor TM 4-6 0.29 11.1 1.7 0.56 10.2 1.7 1.3 1 DDHD DDHD domain 1.1 7.9 20.0 1.6 7.4 20.0 1.1 1 NARP1 NMDA receptor-regulated protein 1 2.8 6.1 9.8 4.2 5.5 9.8 1.1 1 Rrn6 RNA polymerase I-specific transcription-initia 3.2 6.7 8.7 4.9 6.1 8.7 1.1 1 FLO_LFY Floricaula / Leafy protein 3.6 6.6 12.2 5.4 6.0 12.2 1.1 1 CCDC71L Coiled-coil domain-containing protein 71L 4.3 6.6 16.5 6.9 5.9 16.5 1.2 1 DUF1510 Protein of unknown function (DUF1510) 4.5 6.5 8.0 7.2 5.8 8.0 1.2 1 SpoIIP Stage II sporulation protein P (SpoIIP) 8.2 5.0 14.1 12 4.4 14.1 1.1 1 Tim54 Inner membrane protein import complex subunit 8.2 5.9 10.7 13 5.3 10.7 1.2 1 AAA_11 AAA domain Domain annotation for each model (and alignments): >> Eapp_C E2F-associated phosphoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 3.4 0.00013 0.17 77 117 .. 1430 1485 .. 1420 1564 .. 0.45 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00013 Eapp_C 77 keaesekkkkkkkkkkkkeekeeeaeaeeaeeeeeeeeee...............e 117 +++e+e++++kk+k+++k++++++++++++eeeeee+++e + T068785_3 1430 EKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEkekgrrkkkkqlvrlR 1485 33333322222222222222222222222222222222211223334444555550 PP >> DUF2011 Fungal protein of unknown function (DUF2011) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 27.4 0.00014 0.18 70 135 .. 1419 1480 .. 1372 1486 .. 0.55 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00014 DUF2011 70 kkankeakaaakieaeakkekekkkkrkrpGKKrRialrkreaakkekeeaekkekekrkrknreK 135 kk++k +++ k e ++++e++++kkrkr KK+R ++r+r+++++e+ee+ kkekek rk++++ T068785_3 1419 KKKEK--EKEMKKE-KEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEK-KKEKEKGRRKKKKQ 1480 33333..2222222.223334456777777777777766666666666654.33444433333333 PP >> Coilin_N Coilin N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 15.5 0.00014 0.17 82 138 .. 1422 1478 .. 1379 1480 .. 0.63 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00014 Coilin_N 82 tkleaqesededsresssksasttkqkkkkkrekkqeeqdeqkasqaakdkkkkkkk 138 +k++++++e+e+++ + k+ + + +kk+kkr++ ++e++e+++++++k+k ++kkk T068785_3 1422 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKK 1478 344444444444444455555555555555555555555555555555555555554 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 15.3 0.00039 0.49 84 154 .. 1416 1480 .. 1402 1502 .. 0.52 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00039 RR_TM4-6 84 pelkkklaeeeiaeeekeeeeepeaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskkke 154 p+lkkk +e +e +ke+eee++ e+ +k+++++++k++k+++ ++k+e+eeee++k+k+k +++kkk+ T068785_3 1416 PDLKKKEKE---KEMKKEKEEEERRER-KKRKRRRKKKRKKRRR--RKKEEEEEEEKKKEKEKGRRKKKKQ 1480 455666554...344444444444444.4444444444443333..2222333333333333333333333 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 1.7 0.00045 0.56 127 189 .. 1419 1478 .. 1362 1508 .. 0.49 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00045 DDHD 127 geeesaklaesqksherssesskesqeskaaesssasssaksssaeekveledkelee.eaeek 189 +++e++k+ +++k++e+ + e++++k++++++++++++++++ee++e ++ke e+ ++++k T068785_3 1419 KKKEKEKEMKKEKEEEERR----ERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKKK 1478 2222222222222222211....11121222222222222222222222222222333222222 PP >> NARP1 NMDA receptor-regulated protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 20.0 0.0012 1.6 386 449 .. 1418 1479 .. 1396 1488 .. 0.49 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0012 HHH-TTGGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......----- CS NARP1 386 ledkpkakeeekeeaknaelseaerkklrkkakkaekkaekeeaekakkekekkaaekkakked 449 l+ k+k+ke +ke++++++ + ++rk+ rkk++k++++++kee+e+++k+kek+ + ++kk++ T068785_3 1418 LKKKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKE--KGRRKKKK 1479 333333333333333333444444444444555554445554444444433333..22222222 PP >> Rrn6 RNA polymerase I-specific transcription-initiation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 9.8 0.0033 4.2 745 790 .. 1430 1472 .. 1414 1522 .. 0.53 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0033 Rrn6 745 sleaeeqrqrarrkeekrrrrkeklklrsraeassssessqssqsk 790 + e+ee+r+r++rk++++++rk++ r+r+++++++e++++++ k T068785_3 1430 EKEEEERRERKKRKRRRKKKRKKR---RRRKKEEEEEEEKKKEKEK 1472 111222222222222222222222...2222222222222222222 PP >> FLO_LFY Floricaula / Leafy protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 8.7 0.0039 4.9 162 213 .. 1426 1477 .. 1397 1494 .. 0.51 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0039 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS FLO_LFY 162 sGGegeaeeavaarkrkkqrrrkkelrekeveedeedeeeggeseetessag 213 + ++ee +rk++k+rr+kk++++++ +++ee+eee ++++e+ + + T068785_3 1426 EMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKK 1477 3333444444445555555544444444444444333333333333322222 PP >> CCDC71L Coiled-coil domain-containing protein 71L # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 12.2 0.0043 5.4 291 349 .. 1422 1482 .. 1381 1510 .. 0.59 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.0043 CCDC71L 291 akakkikakesvqarterkkqksssetvGqKrkr.aeeakelpakkkar.lvpqsekselg 349 k k++k+ + +++r erkk+k+++++ +Kr+r +e++e +kkk++ ++ +++k++l+ T068785_3 1422 EKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRrKKEEEEEEEKKKEKeKGRRKKKKQLV 1482 3455555555555555555555555555444433133333333333333033344444433 PP >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 16.5 0.0055 6.9 54 113 .. 1420 1479 .. 1410 1497 .. 0.39 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0055 DUF1510 54 seeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevt 113 ++e++k+ kke++ee+ +e k+ + ++++ k+ ++++ee+eek+ke+++ ++++ T068785_3 1420 KKEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKK 1479 222222223333333333333333333333333333333333333333333333333333 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 8.0 0.0058 7.2 19 74 .. 1421 1477 .. 1395 1487 .. 0.40 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0058 SpoIIP 19 teeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee..kldk 74 e++++ ++ekee+e++e+++ ++ +++++ ++k+ee+e+ee +++e+e + +k T068785_3 1421 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEE-KKKEKEkgRRKK 1477 222222222222222222222222222222222222222222222.222222122222 PP >> Tim54 Inner membrane protein import complex subunit Tim54 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 14.1 0.0095 12 188 249 .. 1413 1477 .. 1409 1490 .. 0.38 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.0095 Tim54 188 GPldapeepeeeeaeeeeeeeeeekeeeeeee..eeeeeekeeekeeekeeeeeeeekek.kkkv 249 G l +++e+e++ ++e+eeee++e++++++ ++++++++++k+ee+eeee+++ekek ++k+ T068785_3 1413 GSLPDLKKKEKEKEMKKEKEEEERRERKKRKRrrKKKRKKRRRRKKEEEEEEEKKKEKEKgRRKK 1477 44444444444443333333333333333333112222222222222222222333333223333 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 10.7 0.01 13 133 195 .. 1421 1483 .. 1406 1509 .. 0.64 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.01 AAA_11 133 eleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleeevld 195 ++++ + + +++eee +++k++k ++k+k+k++++r+k ++e +e +ke e+ +++ ++++++ T068785_3 1421 KEKEKEMKKEKEEEERRERKKRKRRRKKKRKKRRRRKKEEEEEEEKKKEKEKGRRKKKKQLVR 1483 222222222233333334566666666666666666666666666777777776666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1781 (0.109224); expected 326.1 (0.02) Passed bias filter: 862 (0.052864); expected 326.1 (0.02) Passed Vit filter: 360 (0.0220778); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 3.02u 0.46s 00:00:03.48 Elapsed: 00:00:00.81 # Mc/sec: 11280.85 // Query: T235917_1 [L=6303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 468 (0.0287011); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.67u 0.36s 00:00:02.02 Elapsed: 00:00:00.67 # Mc/sec: 26913.15 // Query: T235917_2 [L=6302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 635 (0.0389427); expected 326.1 (0.02) Passed bias filter: 152 (0.00932172); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.62u 0.34s 00:00:01.96 Elapsed: 00:00:00.65 # Mc/sec: 27736.85 // Query: T235917_3 [L=6302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 627 (0.0384521); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.66 # Mc/sec: 27316.59 // Query: T353486_1 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1219 (0.0747578); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 61 (0.00374095); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.57 # Mc/sec: 9120.13 // Query: T353486_2 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1425 (0.0873911); expected 326.1 (0.02) Passed bias filter: 291 (0.0178462); expected 326.1 (0.02) Passed Vit filter: 148 (0.00907641); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.33s 00:00:01.68 Elapsed: 00:00:00.65 # Mc/sec: 8137.96 // Query: T353486_3 [L=1849] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1849 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1175 (0.0720594); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 60 (0.00367963); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.57 # Mc/sec: 9120.13 // Query: T158873_1 [L=6303] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6303 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.47u 0.33s 00:00:01.80 Elapsed: 00:00:00.64 # Mc/sec: 28174.71 // Query: T158873_2 [L=6302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 269 (0.016497); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.36s 00:00:01.79 Elapsed: 00:00:00.63 # Mc/sec: 28617.38 // Query: T158873_3 [L=6302] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6302 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.75u 0.36s 00:00:02.11 Elapsed: 00:00:00.79 # Mc/sec: 22821.46 // Query: T201250_1 [L=2772] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2772 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 60 (0.00367963); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 11836.15 // Query: T201250_2 [L=2771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 134 (0.00821783); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.64 # Mc/sec: 12386.50 // Query: T201250_3 [L=2771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.66 # Mc/sec: 12011.15 // Query: T272285_1 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 294 (0.0180302); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.54 # Mc/sec: 2283.37 // Query: T272285_2 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 2125.89 // Query: T272285_3 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 1957.17 // Query: T353593_1 [L=364] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (364 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 155 (0.0095057); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.66 # Mc/sec: 1577.79 // Query: T353593_2 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.55 # Mc/sec: 1888.15 // Query: T353593_3 [L=363] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (363 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.71 # Mc/sec: 1462.65 // Query: T199461_1 [L=270] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (270 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.62 # Mc/sec: 1245.85 // Query: T199461_2 [L=269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.62 # Mc/sec: 1241.23 // Query: T199461_3 [L=269] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (269 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 307 (0.0188274); expected 326.1 (0.02) Passed bias filter: 156 (0.00956703); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.62 # Mc/sec: 1241.23 // Query: T212080_1 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.63 # Mc/sec: 3492.03 // Query: T212080_2 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.55 # Mc/sec: 3999.96 // Query: T212080_3 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.59 # Mc/sec: 3723.93 // Query: T227876_1 [L=3381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.43u 0.45s 00:00:01.88 Elapsed: 00:00:00.83 # Mc/sec: 11653.57 // Query: T227876_2 [L=3381] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3381 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.89 # Mc/sec: 10867.94 // Query: T227876_3 [L=3380] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3380 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 370 (0.022691); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.72 # Mc/sec: 13430.01 // Query: T356803_1 [L=1011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 4820.50 // Query: T356803_2 [L=1011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 263 (0.016129); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.69 # Mc/sec: 4191.74 // Query: T356803_3 [L=1011] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-10 40.2 0.1 6.3e-10 39.5 0.1 1.2 1 EloA-BP1 ElonginA binding-protein 1 Domain annotation for each model (and alignments): >> EloA-BP1 ElonginA binding-protein 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.5 0.1 3.9e-14 6.3e-10 125 161 .. 301 337 .. 296 341 .. 0.91 Alignments for each domain: == domain 1 score: 39.5 bits; conditional E-value: 3.9e-14 EloA-BP1 125 gaalYekLkeylLteeqLkenGyPrphpekpGkavll 161 g lY++Lk+ylLteeqL++n+yPrp p+kpG+++l T356803_3 301 GVILYRHLKNYLLTEEQLHKNNYPRPYPNKPGSILLN 337 678******************************9886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1011 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.59 # Mc/sec: 4902.20 // Query: T344362_1 [L=2670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2670 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 200 (0.0122654); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.62 # Mc/sec: 12320.03 // Query: T344362_2 [L=2669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.64 # Mc/sec: 11930.56 // Query: T344362_3 [L=2669] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2669 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.76 # Mc/sec: 10046.78 // Query: T131338_1 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.64 # Mc/sec: 2820.60 // Query: T131338_2 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-05 24.2 0.4 5.4e-05 23.6 0.4 1.2 1 Ank_2 Ankyrin repeats (3 copies) 7.1e-05 23.1 1.0 0.00012 22.4 1.0 1.4 1 Ank_4 Ankyrin repeats (many copies) 8e-05 22.6 1.8 0.018 15.4 0.2 2.6 2 Ank_3 Ankyrin repeat 0.0012 19.1 0.2 0.0026 18.0 0.2 1.6 1 Ank_5 Ankyrin repeats (many copies) 0.0039 17.5 3.1 0.042 14.2 0.5 2.5 2 Ank Ankyrin repeat Domain annotation for each model (and alignments): >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.4 1.7e-08 5.4e-05 18 75 .. 542 605 .. 526 610 .. 0.76 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 1.7e-08 Ank_2 18 egadpnk.ngetaLhyAarngnleivklLleh.a....adndgrtaLhlAarsghleivklLle 75 +g+ ++ + +L +Aa+ g+l +v++Ll++ a +++ +r+aL lA+ h +iv lLl+ T131338_2 542 SGHPSHAwIECQPLLLAAHLGKLIMVEFLLKKnAninaVNCLNRSALTLAVIREHKDIVILLLQ 605 554433244478*********9999*****964244567799********************95 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 1.0 3.8e-08 0.00012 4 55 .] 554 604 .. 552 604 .. 0.93 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 3.8e-08 Ank_4 4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 +L aa+ g+l +v++Ll k+a+ina+ n ++al A+ r++++i++lLl T131338_2 554 PLLLAAHLGKLIMVEFLLKKNANINAV-NCLNRSALTLAVIREHKDIVILLL 604 7888999********************.777889****************98 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.2 5.5e-06 0.018 5 31 .] 554 579 .. 551 579 .. 0.94 2 ! 6.1 0.1 0.0058 19 2 23 .. 584 605 .. 583 609 .. 0.92 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 5.5e-06 Ank_3 5 pLhlAarsgrpeivkfLlenlgadvni 31 pL lAa+ g++ +v+fLl+ ++a++n+ T131338_2 554 PLLLAAHLGKLIMVEFLLK-KNANINA 579 9******************.9****96 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0058 Ank_3 2 GetpLhlAarsgrpeivkfLle 23 ++++L lA+ + +iv++Ll+ T131338_2 584 NRSALTLAVIREHKDIVILLLQ 605 689******************9 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.2 7.9e-07 0.0026 19 56 .] 554 591 .. 543 591 .. 0.94 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 7.9e-07 Ank_5 19 pLhlAakggalevvrlLlargadlnltdsrgltaldlA 56 pL lAa+ g l +v++Ll+ +a++n+ ++ +++al lA T131338_2 554 PLLLAAHLGKLIMVEFLLKKNANINAVNCLNRSALTLA 591 6778*******************************998 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.5 1.3e-05 0.042 5 32 .] 554 582 .. 552 582 .. 0.94 2 ? 3.0 0.1 0.043 1.4e+02 4 22 .. 586 604 .. 584 608 .. 0.88 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.3e-05 HHHHHHHHTTHHHHHHHH.TTTSTTCBST CS Ank 5 PLHlAatngkkriiklLL.hGAdlnaldn 32 PL lAa+ gk+ ++++LL + A++na+++ T131338_2 554 PLLLAAHLGKLIMVEFLLkKNANINAVNC 582 999***************779*****996 PP == domain 2 score: 3.0 bits; conditional E-value: 0.043 BHHHHHHHHTTHHHHHHHH CS Ank 4 TPLHlAatngkkriiklLL 22 ++L lA+ + +k+i+ lLL T131338_2 586 SALTLAVIREHKDIVILLL 604 7999***899******999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 2735.13 // Query: T131338_3 [L=631] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.058 13.4 0.4 0.11 12.6 0.4 1.4 1 YesK YesK-like protein Domain annotation for each model (and alignments): >> YesK YesK-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.4 6.7e-06 0.11 48 66 .. 59 77 .. 56 81 .. 0.87 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.7e-06 YesK 48 llvvGGweGmglgilgvsv 66 vG+w+Gm+ gi+++s+ T131338_3 59 DCTVGRWKGMAGGIVTISI 77 568**************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (631 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.72 # Mc/sec: 2507.20 // Query: T126026_1 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.70 # Mc/sec: 6624.86 // Query: T126026_2 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 6921.50 // Query: T126026_3 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 6917.23 // Query: T353287_1 [L=2716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 158 (0.00968968); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.67 # Mc/sec: 11597.04 // Query: T353287_2 [L=2716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2716 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.32s 00:00:01.72 Elapsed: 00:00:00.92 # Mc/sec: 8445.67 // Query: T353287_3 [L=2715] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2715 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.79 # Mc/sec: 9831.84 // Query: T141181_1 [L=1339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1339 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.64 # Mc/sec: 5985.39 // Query: T141181_2 [L=1338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-43 145.7 2.8 5.7e-43 144.7 2.8 1.6 1 DUF4632 Domain of unknown function (DUF4632) 2.6e-07 30.4 1.1 7.5e-07 28.9 1.1 1.9 1 zf-RING_UBOX RING-type zinc-finger 7.7e-06 25.6 3.3 7.7e-06 25.6 3.3 2.1 2 zf-RING_5 zinc-RING finger domain 0.0015 18.6 4.0 0.0015 18.6 4.0 2.4 2 zf-RING_2 Ring finger domain 0.0015 18.2 2.1 0.0057 16.4 2.1 2.1 1 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) Domain annotation for each model (and alignments): >> DUF4632 Domain of unknown function (DUF4632) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.7 2.8 1.8e-46 5.7e-43 1 71 [] 502 572 .. 502 572 .. 0.99 Alignments for each domain: == domain 1 score: 144.7 bits; conditional E-value: 1.8e-46 DUF4632 1 aGspakesgdadgeadeeeesekgagPrsaGWralrrlwdrvlaParrlrrPlPsnvlyCpeikdiahmtr 71 aG+pakes+dadgea+ee+esekgagPrsaGWralrrlwdrvl Parr+rrPlPsnvlyC+eikdi+h+tr T141181_2 502 AGNPAKESSDADGEAEEEGESEKGAGPRSAGWRALRRLWDRVLGPARRWRRPLPSNVLYCAEIKDIGHLTR 572 69********************************************************************9 PP >> zf-RING_UBOX RING-type zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 1.1 2.3e-10 7.5e-07 1 38 [] 403 463 .. 403 463 .. 0.82 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 2.3e-10 zf-RING_UBOX 1 CpIClelft....dP.llp......CGHtFCreClw............elskslegkfkCP 38 C IC+ +f+ P lp CGHt+C Cl+ +l++ ++CP T141181_2 403 CNICYRPFNlgcrAPrRLPgtararCGHTICTACLRelaargdgggaaARVVRLRRVVTCP 463 *************775245567777**********76778888888888888888888888 PP >> zf-RING_5 zinc-RING finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 1.3 5 1.6e+04 2 6 .. 56 60 .. 55 61 .. 0.71 2 ! 25.6 3.3 2.4e-09 7.7e-06 2 43 .. 403 466 .. 402 467 .. 0.89 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 5 zf-RING_5 2 CnkCf 6 C+kC+ T141181_2 56 CSKCH 60 88887 PP == domain 2 score: 25.6 bits; conditional E-value: 2.4e-09 zf-RING_5 2 CnkCfekl.......skeekfyltsCgHifCekClkklk...............ekeavCpiCr 43 Cn+C++++ + + +CgH++C +Cl++l + +Cp+Cr T141181_2 403 CNICYRPFnlgcrapRRLPGTARARCGHTICTACLRELAargdgggaaarvvrlRRVVTCPFCR 466 ********9998654444449999***************************************9 PP >> zf-RING_2 Ring finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 4.0 4.5e-07 0.0015 2 44 .] 402 466 .. 401 466 .. 0.70 2 ? -3.7 0.4 4.3 1.4e+04 2 7 .. 1072 1077 .. 1061 1083 .. 0.57 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 4.5e-07 zf-RING_2 2 eCpICleelesgdsvl.llp......CgHvfhreClekwlrssst................CPlCr 44 +C IC+ +++ g +++ +lp CgH+++ Cl++ l+ + CP+Cr T141181_2 402 DCNICYRPFNLGCRAPrRLPgtararCGHTICTACLRE-LAARGDgggaaarvvrlrrvvtCPFCR 466 7********77777443223344555**********66.4455555666666666666688****9 PP == domain 2 score: -3.7 bits; conditional E-value: 4.3 zf-RING_2 2 eCpICl 7 C +Cl T141181_2 1072 HCKLCL 1077 244443 PP >> zf-C3HC4 Zinc finger, C3HC4 type (RING finger) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 2.1 1.7e-06 0.0057 1 41 [] 403 465 .. 403 465 .. 0.90 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.7e-06 -SST-S--SS-E.........EETTTSEEESCHHHHHHHHC.............TSSBSTTTT CS zf-C3HC4 1 CpiCleeakepn.........elleCkHsfCskCirkilks.............rkkvkCPlC 41 C+iC + + C+H++C++C+r++ r+ v+CP C T141181_2 403 CNICYRPFNLGCraprrlpgtARARCGHTICTACLRELAARgdgggaaarvvrlRRVVTCPFC 465 8888888888888888888888899*************9999999999999999999999999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 316 (0.0193794); expected 326.1 (0.02) Passed bias filter: 205 (0.0125721); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.61 # Mc/sec: 6275.07 // Query: T141181_3 [L=1338] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1338 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.60 # Mc/sec: 6379.65 // Query: T139219_1 [L=386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.56 # Mc/sec: 1971.93 // Query: T139219_2 [L=386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (386 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.56 # Mc/sec: 1971.93 // Query: T139219_3 [L=385] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (385 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.61 # Mc/sec: 1805.61 // Query: T188427_1 [L=5377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5377 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1010 (0.0619404); expected 326.1 (0.02) Passed bias filter: 306 (0.0187661); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.37u 0.40s 00:00:02.77 Elapsed: 00:00:00.84 # Mc/sec: 18312.72 // Query: T188427_2 [L=5376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 494 (0.0302956); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.76u 0.42s 00:00:02.18 Elapsed: 00:00:00.76 # Mc/sec: 20236.61 // Query: T188427_3 [L=5376] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.8 7.9 4.6 4.8 7.1 4.6 1.2 1 Peptidase_S49_N Peptidase family S49 N-terminal Domain annotation for each model (and alignments): >> Peptidase_S49_N Peptidase family S49 N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 4.6 0.00029 4.8 65 103 .. 2238 2276 .. 2219 2297 .. 0.69 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00029 Peptidase_S49_N 65 eelkalekeekkeekeekkaekkkakeeeekkrlfvldF 103 e++k+ +k+++k+e++e+k++ kk+++++e+k++f l T188427_3 2238 ERQKQNKKKRNKTERKETKQKEKKETKQKERKEIFNLPT 2276 445555555555555555555455555677788886655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5376 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 964 (0.0591193); expected 326.1 (0.02) Passed bias filter: 441 (0.0270453); expected 326.1 (0.02) Passed Vit filter: 48 (0.0029437); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.54u 0.50s 00:00:03.04 Elapsed: 00:00:00.81 # Mc/sec: 18987.43 // Query: T132850_1 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 396 (0.0242855); expected 326.1 (0.02) Passed bias filter: 204 (0.0125107); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.72 # Mc/sec: 6607.72 // Query: T132850_2 [L=1663] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1663 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 7208.42 // Query: T132850_3 [L=1662] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 2.5 8.6 16.4 4.7 7.7 16.4 1.4 1 PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophil Domain annotation for each model (and alignments): >> PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 16.4 0.00029 4.7 62 95 .. 947 977 .. 938 980 .. 0.57 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00029 PRP38_assoc 62 rrsrstprdrdrardRdrrrskrsreRdrsrsrd 95 + +r+ +r+r rdRdr ++ r+reR+r+r+r+ T132850_3 947 KGKRE--NNRERKRDRDRGGE-RERERERERERE 977 22222..55666666666655.777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1662 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 346 (0.0212192); expected 326.1 (0.02) Passed bias filter: 201 (0.0123268); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.71 # Mc/sec: 6696.76 // Query: T260632_1 [L=1771] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.83 9.5 7.1 1.8 8.4 7.1 1.5 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 7.1 0.00011 1.8 41 74 .. 524 558 .. 516 571 .. 0.70 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.00011 Lamprin 41 gglgygglgygglgvaglgvagl.gygglgypgaa 74 g lg+ glg+ glg+aglg ag g+ g pg+a T260632_1 524 GRLGWAGLGWAGLGWAGLGGAGReGWRGRRGPGSA 558 55777788888888888777774366666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1771 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.65 # Mc/sec: 7794.66 // Query: T260632_2 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.3 7.5 5.9 8 6.3 5.9 1.5 1 Lamprin Lamprin Domain annotation for each model (and alignments): >> Lamprin Lamprin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 5.9 0.00049 8 49 69 .. 525 545 .. 519 557 .. 0.53 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00049 Lamprin 49 gygglgvaglgvaglgygglg 69 g+ glg+aglg aglg+ g g T260632_2 525 GWAGLGWAGLGWAGLGWAGRG 545 444444444444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 357 (0.0218938); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.69 # Mc/sec: 7338.65 // Query: T260632_3 [L=1770] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1770 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 262 (0.0160677); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.63 # Mc/sec: 8037.57 // Query: T202683_1 [L=2496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-37 127.2 0.2 7.2e-37 126.6 0.2 1.3 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.6 0.2 4.4e-41 7.2e-37 1 168 [. 1627 1791 .. 1627 1792 .. 0.87 Alignments for each domain: == domain 1 score: 126.6 bits; conditional E-value: 4.4e-41 HERV-K_env_2 1 avtwmdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnyl 95 avtwmd pievyvnds+w+pg +ddrcpa+p eeg ni++g+rypp clg + cl +q w v +p + + h++sg+sl+p ++ T202683_1 1627 AVTWMDAPIEVYVNDSIWMPGSLDDRCPAQPSEEGTPFNITLGFRYPPFCLGPTNVCLSLDIQTWAVTLPSGHSVPPL-GHLISGLSLKPLRQIK 1720 79********************************************************************98887766.59*********76654 PP HERV-K_env_2 96 qd.fsyqrslkfrpkgkpcpkeipkeskntevlvweecvansavilqnnefgtiidwaprgqfyhncsgqtqsc 168 y ++ +++p c + l+w++cv+ +l n ti+dwap+g++ +cs + c T202683_1 1721 TViTDYIHTSQYKPLDL-CVL--STCLQMLTKLIWKDCVSSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDC 1791 44145788888888765.433..3334556679***********************************887777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2496 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 276 (0.0169263); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.82 # Mc/sec: 8708.09 // Query: T202683_2 [L=2495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 394 (0.0241629); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.60 # Mc/sec: 11896.28 // Query: T202683_3 [L=2495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-10 39.5 0.3 8.2e-10 38.7 0.3 1.3 1 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.3 5e-14 8.2e-10 33 96 .. 2025 2089 .. 2020 2095 .. 0.95 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 5e-14 HHHHHHHHHHSSCHH..........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHH CS GP41 33 idkklearvnaleevvlalGqevaslktqlklrChanykliCvTkvpynase.sWervkkhlegi 96 id+kl +++n l + v+ +G ++sl+++l+++C n C+T+ +yn+s +We vk hl+g T202683_3 2025 IDQKLANQINDLRQTVIWMGGRIMSLEHRLQMQCDWNTSDFCITPFQYNESVhNWESVKCHLQGS 2089 89*************************************************99*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2495 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 273 (0.0167423); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 12522.41 // Query: T367390_1 [L=2831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 747 (0.0458114); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.63 # Mc/sec: 12855.57 // Query: T367390_2 [L=2831] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2831 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.57 # Mc/sec: 13963.81 // Query: T367390_3 [L=2830] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2830 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 615 (0.0377162); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.57 # Mc/sec: 13958.88 // Query: T295122_1 [L=1502] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1502 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 7957.35 // Query: T295122_2 [L=1501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 131 (0.00803385); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.54 # Mc/sec: 7952.05 // Query: T295122_3 [L=1501] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1501 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 421 (0.0258187); expected 326.1 (0.02) Passed bias filter: 285 (0.0174782); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.59 # Mc/sec: 7278.15 // Query: T368433_1 [L=1123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 191 (0.0117135); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.56 # Mc/sec: 5736.99 // Query: T368433_2 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5631.32 // Query: T368433_3 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.55 # Mc/sec: 5836.09 // Query: T081044_1 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.72 8.4 26.8 1 7.9 26.8 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 26.8 6.2e-05 1 228 308 .. 128 213 .. 112 244 .. 0.30 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 6.2e-05 Presenilin 228 eaekaevakaeeeeeaekkeeeaseeskeeeseeesseksassse.....seeeeeeesaeaeseaeesseekeeeessesseeee 308 e+ek++++ ++e++++e+k++++++++k+e ++++ + k++++++ +ee+++++++++ ++++e +e+k+ee++++++e+++ T081044_1 128 EREKKRRKRKKERRKRERKKKKEERQRKKEGRKKQRKGKERERRReerkkEEERKKKRERKKRKKSKEGRERKKEERKERKKERKK 213 11222222222222222222222222222222221111111111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2707 (0.166013); expected 326.1 (0.02) Passed bias filter: 917 (0.056237); expected 326.1 (0.02) Passed Vit filter: 591 (0.0362443); expected 16.3 (0.001) Passed Fwd filter: 203 (0.0124494); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.68 # Mc/sec: 1384.14 // Query: T081044_2 [L=329] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 8.8 4.8 29.6 13 4.3 29.6 1.1 1 Presenilin Presenilin Domain annotation for each model (and alignments): >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 29.6 0.00078 13 234 315 .. 132 216 .. 111 242 .. 0.29 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.00078 Presenilin 234 vakaeeeeeaekkeeeaseeskeeeseeesseksassse...seeeeeeesaeaeseaeesseekeeeessesseeeeeeeeeee 315 ++++ +++e+++ke++ ++++ke+++e +++e+ ++++e +e+++++e++++++++e++ +++e+e+++++++e+++e+++e+ T081044_2 132 REERGRKKEEREKERRRKKKDKEKRKEGRNKERGKKEREeekKERKRKKERKREKERKERKVRKEEKERKKKEKKERKKERKKER 216 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2821 (0.173004); expected 326.1 (0.02) Passed bias filter: 877 (0.0537839); expected 326.1 (0.02) Passed Vit filter: 566 (0.0347111); expected 16.3 (0.001) Passed Fwd filter: 172 (0.0105483); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.71u 0.42s 00:00:02.13 Elapsed: 00:00:00.68 # Mc/sec: 1384.14 // Query: T081044_3 [L=328] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.034 12.3 29.6 0.06 11.5 29.6 1.3 1 CDC45 CDC45-like protein 0.73 9.7 10.5 0.98 9.3 10.5 1.3 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmembr 1.7 7.8 14.8 2.2 7.4 14.8 1.1 1 DUF4407 Domain of unknown function (DUF4407) Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 29.6 1.1e-05 0.06 129 220 .. 130 226 .. 118 260 .. 0.25 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.1e-05 CDC45 129 eeesdedd...eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeeeedeeersrkrrrse.......psakklrrr.lkkerrkyeavleky 217 eee++e++ +e +++++ ++ +++ ++ee+++ + +++kk+rk+++ +++e+ +rk++++e ++++k+r++ +kker+k +++ +k T081044_3 130 EEEKKEEErkkKERKKEEERRKTKKKGRKEETKKGERKREKKRRKKERGRKKEK------ERKKEKKEk*grkrkKERRKKRKKeRKKERKKERKKERKE 223 111111111111111111122222222222222222222222222222222222......1111111122222211111122221222222222222222 PP CDC45 218 ysq 220 ++ T081044_3 224 RKR 226 222 PP >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 10.5 0.00018 0.98 111 228 .. 129 245 .. 68 254 .. 0.59 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00018 -----------.--------------------------------------SS---TTGGG--............--------TTHHHHHHHHHHH CS Neur_chan_memb 111 rpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk.......eelspelkkavegvkyiadhl 198 r++e+k++e+ ++++ +++ee +k+k +++k+ e++ ++k+ +++ ++k+++e++ k ++ ++e +k ++ + ++ T081044_3 129 REEEKKEEER--KKKERKKEEERRKTKKKGRKEETKKGERKREKKRRKKERGRKKEKERK------Kekkek*gRKRKKERRKKRKKERKKERKK 215 2222222222..222222222222222222223333333333333333333333333332......23345698555566666666666677777 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Neur_chan_memb 199 raededksvkedwkyvamviDriflwifii 228 ++++e k+ k+ ++ ++ i r+f ++ i T081044_3 216 ERKKERKERKRSFTSLVSWIPRYFILFEAI 245 788888888888899999999998776555 PP >> DUF4407 Domain of unknown function (DUF4407) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 14.8 0.00041 2.2 144 269 .. 126 261 .. 118 263 .. 0.62 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00041 DUF4407 144 alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld........atarlaalra.elaeleaerakeraasq 234 + ++e +++e+++++++++ ++e tk++g + kg++ +ekk+ +++ ++ ++ ++k + +++r++++++ +++e ++er+ker++ + T081044_3 126 KREREEEKKEEERKKKERKKEEERRKTKKKGRKEETKKGERKREKKRRKKERGRKKEKERKKEKkek*grkrKKERRKKRKKeRKKERKKERKKERKERK 225 4555666777777777777777777777777666666677766666666665555555555544777**8874444444433044556677777777777 PP DUF4407 235 aaaaaddGllarlea.ldrltkedatallarlllfl 269 ++ + + r+ + ++++ + ++ + + +++l+l T081044_3 226 RSFTSLVSWIPRYFIlFEAIVNGSSLMIWLSVCLLL 261 777777777888888566666666666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (328 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2553 (0.156568); expected 326.1 (0.02) Passed bias filter: 694 (0.042561); expected 326.1 (0.02) Passed Vit filter: 361 (0.0221391); expected 16.3 (0.001) Passed Fwd filter: 110 (0.00674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.31u 0.45s 00:00:01.76 Elapsed: 00:00:00.68 # Mc/sec: 1379.93 // Query: T357463_1 [L=1041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 227 (0.0139213); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 5727.16 // Query: T357463_2 [L=1041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1041 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 167 (0.0102416); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 5727.16 // Query: T357463_3 [L=1040] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1040 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 5613.70 // Query: T022826_1 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 16.2 0.1 5.9 7.4 0.1 2.5 2 Ig_3 Immunoglobulin domain 0.071 13.1 0.0 0.42 10.6 0.0 2.0 2 I-set Immunoglobulin I-set domain 0.096 12.7 0.0 0.21 11.6 0.0 1.5 1 V-set Immunoglobulin V-set domain Domain annotation for each model (and alignments): >> Ig_3 Immunoglobulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.0 0.0032 17 52 74 .. 419 441 .. 392 445 .. 0.83 2 ? 7.4 0.1 0.0011 5.9 18 42 .. 482 509 .. 467 551 .. 0.71 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0032 SEEEETTEEEESS--GGG-EEEE CS Ig_3 52 ssegssssLtisnvtksdsGtYt 74 ++ + ssL+i+n+ ++dsG+Y T022826_1 419 VHVPNISSLRIENLAPEDSGQYF 441 567789****************5 PP == domain 2 score: 7.4 bits; conditional E-value: 0.0011 -EEE----EEES--.EEEEEE..-.... CS Ig_3 18 svtLtCeaegnppp.titWykngkk..l 42 ++tL+C++ g + ++tW +g l T022826_1 482 NITLECRVPGATEDlNMTWESKGLLgeL 509 89******9999999******9996532 PP >> I-set Immunoglobulin I-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 7.6e-05 0.42 51 80 .. 419 449 .. 396 458 .. 0.82 2 ? -1.1 0.0 0.33 1.8e+03 18 38 .. 483 504 .. 473 511 .. 0.88 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 7.6e-05 EET.TEEEEEESSB-GGGGEEEEEEEEETSE CS I-set 51 vee.aeytLtIsnvevsDeGkYtckatnsag 80 v ++++L+I+n ++D+G+Y ++t g T022826_1 419 VHVpNISSLRIENLAPEDSGQYFAVITSTKG 449 3334799***************999987766 PP == domain 2 score: -1.1 bits; conditional E-value: 0.33 EEEEEEEECS.SS-EEEEEETT CS I-set 18 velectveGe.pepsvsWakdg 38 ++lec+v G ++++ +W ++g T022826_1 483 ITLECRVPGAtEDLNMTWESKG 504 789*****987999****8875 PP >> V-set Immunoglobulin V-set domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 3.9e-05 0.21 61 101 .. 418 454 .. 381 460 .. 0.68 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3.9e-05 TEEEEEETTTTEEEEEESSESGGG-EEEEEEE.ESSSEEEEE CS V-set 61 rfslrgdpsrsdfsLtiqnlqlsDsGtYfCav.vssgegvfg 101 r+ ++ sL+i+nl ++DsG Yf + +++geg f+ T022826_1 418 RVHVPN-----ISSLRIENLAPEDSGQYFAVItSTKGEGIFQ 454 555554.....88****************9986666665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 863 (0.0529253); expected 326.1 (0.02) Passed bias filter: 521 (0.0319514); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 7382.95 // Query: T022826_2 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 731 (0.0448301); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.55 # Mc/sec: 7651.42 // Query: T022826_3 [L=1471] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1471 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 305 (0.0187048); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 7793.11 // Query: T381512_1 [L=5973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.062 13.4 0.0 0.11 12.5 0.0 1.4 1 Arylesterase Arylesterase Domain annotation for each model (and alignments): >> Arylesterase Arylesterase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 7e-06 0.11 18 53 .. 2443 2478 .. 2438 2482 .. 0.89 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 7e-06 S--SHHHHHHHHHTT---EEEEEE-SS-EEEEEEEE CS Arylesterase 18 yFgdnfllllemslqlawtavvYyspsevkvvasgl 53 F ++fl++l m+l + w+ +++ + evk+ +l T381512_1 2443 LFWTGFLQYLRMILTTFWGDSIFFTAREVKQILIQL 2478 799***************************987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 354 (0.0217098); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.46u 0.39s 00:00:01.85 Elapsed: 00:00:00.67 # Mc/sec: 25504.09 // Query: T381512_2 [L=5973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 574 (0.0352018); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 33 (0.00202379); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.39s 00:00:02.12 Elapsed: 00:00:00.68 # Mc/sec: 25129.03 // Query: T381512_3 [L=5973] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5973 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.67 # Mc/sec: 25504.09 // Query: T172460_1 [L=622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3489.09 // Query: T172460_2 [L=622] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (622 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 290 (0.0177849); expected 326.1 (0.02) Passed bias filter: 216 (0.0132467); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3421.99 // Query: T172460_3 [L=621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 326 (0.0199926); expected 326.1 (0.02) Passed bias filter: 157 (0.00962836); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 3416.49 // Query: T292096_1 [L=2395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-43 146.9 2.3 8.2e-43 146.4 2.3 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.4 2.3 5e-47 8.2e-43 1 210 [. 1679 1907 .. 1679 1923 .. 0.94 Alignments for each domain: == domain 1 score: 146.4 bits; conditional E-value: 5e-47 EE-TT......S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB- CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvple 86 ipK+g ++++Rpisl++++ k+lnk++a + ++++kl++++q+gf p + + ++ +++++++++k k+++++++D +ka d+++ + T292096_1 1679 IPKPGrdttkKENFRPISLMNINAKILNKILAk*iQ---QHVKKLIHHDQVGFIPAMQDWFNIcksiNVIQHINRAKDKNHMIISIDAEKASDKIQQP 1773 899999999999******************964434...79999************9999999***99****************************** PP GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEES CS RVT_1 87 ellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsk 175 + l++l++f+++ + ++++++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++++ + T292096_1 1774 FMLKTLNKFGIDGMYLKIVRAIYDKPTANIILNGQTLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQKKeikgiqlgkEEVKLSLFADDMIVYLE 1871 ***********************************99*********************************99************************** PP S.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 176 s.keelqelleaveewlkesglkinpeKtklvlfsg 210 + ++q+ll+ ++++ k sg+kin eK++++l+++ T292096_1 1872 NpIVSAQNLLKLISNFSKVSGYKINVEKSRAFLYTN 1907 *6677**************************98733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.56 # Mc/sec: 12235.16 // Query: T292096_2 [L=2395] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2395 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.54 # Mc/sec: 12688.31 // Query: T292096_3 [L=2394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2394 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 198 (0.0121428); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.55 # Mc/sec: 12452.41 // Query: T095572_1 [L=2109] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2109 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 335 (0.0205446); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 10774.09 // Query: T095572_2 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.54 # Mc/sec: 11167.83 // Query: T095572_3 [L=2108] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2108 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 82 (0.00502882); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 10580.05 // Query: T094005_1 [L=1200] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1200 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 384 (0.0235496); expected 326.1 (0.02) Passed bias filter: 236 (0.0144732); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 6241.81 // Query: T094005_2 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 254 (0.0155771); expected 326.1 (0.02) Passed bias filter: 154 (0.00944438); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.52 # Mc/sec: 6596.41 // Query: T094005_3 [L=1199] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.091 13.0 8.7 0.19 12.0 8.7 1.4 1 Wbp11 WW domain binding protein 11 Domain annotation for each model (and alignments): >> Wbp11 WW domain binding protein 11 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 8.7 1.2e-05 0.19 8 50 .. 665 707 .. 664 714 .. 0.88 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.2e-05 Wbp11 8 daaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLe 50 d K+++kk++kK+Kk++q++ e l +k++ ++ + +Le T094005_3 665 DPVSKKKKKKKKKKKKKSQQAEMELILLMKNVASIIQRGHSLE 707 567799999999***********************99888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1199 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 737 (0.0451981); expected 326.1 (0.02) Passed bias filter: 353 (0.0216485); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.56 # Mc/sec: 6125.24 // Query: T124784_1 [L=2932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.57 # Mc/sec: 14461.99 // Query: T124784_2 [L=2932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 0 (0); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 14715.71 // Query: T124784_3 [L=2932] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2932 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 168 (0.010303); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.56 # Mc/sec: 14715.71 // Query: T214751_1 [L=2419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 12582.45 // Query: T214751_2 [L=2419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 192 (0.0117748); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 12357.76 // Query: T214751_3 [L=2419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2419 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.57 # Mc/sec: 11931.63 // Query: T315352_1 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 122 (0.00748191); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.98u 0.45s 00:00:02.43 Elapsed: 00:00:00.89 # Mc/sec: 21533.37 // Query: T315352_2 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.48s 00:00:02.64 Elapsed: 00:00:00.97 # Mc/sec: 19757.42 // Query: T315352_3 [L=6699] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6699 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.16u 0.41s 00:00:02.57 Elapsed: 00:00:00.93 # Mc/sec: 20607.20 // Query: T001698_1 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 236 (0.0144732); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 9997.58 // Query: T001698_2 [L=1957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.73 # Mc/sec: 7669.38 // Query: T001698_3 [L=1956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.19 11.6 0.0 0.49 10.3 0.0 1.6 2 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta Domain annotation for each model (and alignments): >> GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.0 3e-05 0.49 27 82 .. 635 692 .. 631 702 .. 0.78 2 ? -3.5 0.0 0.55 8.9e+03 5 23 .. 1428 1446 .. 1427 1452 .. 0.84 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 3e-05 HHHHCCGGSH.HHTTSHHHHTCHHHHHHHHHHHTSE.EEEEEEEE.SEECSTTTSSCS CS GFO_IDH_MocA_C 27 eakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqp.psvvaalgrmrqnaeaaeded 82 ++++ ++ + +gG++++ ++Hd D + L+G+ p +v+ lg++ ++++e+++ T001698_3 635 PSRPEARAHPpLCPGGTFYNAAVHDVDAVCMLLGEAtPDTVFSLGHVFCPGCKGEETQ 692 55566665567789********************853788888888877777777765 PP == domain 2 score: -3.5 bits; conditional E-value: 0.55 HTTTTSSEEEEEEEEEEBE CS GFO_IDH_MocA_C 5 engklGevvsvdvwtldtr 23 + g++G++ +++ w+ + + T001698_3 1428 RRGSIGKPCMFHFWFNQAF 1446 6899********9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.56 # Mc/sec: 9992.47 // Query: T273751_1 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-27 96.5 0.1 2.1e-27 95.8 0.1 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.8 0.1 1.3e-31 2.1e-27 294 367 .. 1261 1336 .. 1255 1337 .. 0.97 Alignments for each domain: == domain 1 score: 95.8 bits; conditional E-value: 1.3e-31 HHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 294 arrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqa 367 +rre +++++ilkek+fqPr++yP kls+i+ e+k f dk+ lrd+++trPal++llke ++erk+ yq+l++ T273751_1 1261 SRRELGPIFNILKEKNFQPRISYPDKLSFISGEELKSFTDKQILRDFVTTRPALQELLKEalNMERKNWYQPLQKR 1336 7************************************************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 306 (0.0187661); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.69 # Mc/sec: 10502.15 // Query: T273751_2 [L=2533] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-67 226.0 20.7 3.1e-64 217.0 20.7 2.3 1 Transposase_22 L1 transposable element 1.9e-37 128.8 2.9 3e-37 128.2 2.9 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 217.0 20.7 3.8e-68 3.1e-64 11 313 .. 1007 1280 .. 998 1285 .. 0.90 Alignments for each domain: == domain 1 score: 217.0 bits; conditional E-value: 3.8e-68 XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX............. CS Transposase_22 11 kqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekeentekqlkiikekqentskqv 99 + +sk +++s+P ++ sPa ++ ++++f+el + ++++ + +elke i +k+ke + k+++e + T273751_2 1007 NAKDSKKQNASSPNDRNP-SPAR--ARNLMENEFDELTEVGFRQwviTNSSELKEHILTKCKEAKnLDKKLQELLTRITS------------- 1083 67899******9987665.6777..6788**************95557899************98777888886555444............. PP ......XXXXXXXXXXXXXXX.XX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT CS Transposase_22 100 memn.kellelktkvdelkke.qseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkrP 190 +e n +el++lk ++e+++ + s+ss+id+ eer+s +ed++++i +e k +ekr+k+++qslq+i+d+vkrP T273751_2 1084 LEGNiNELMQLKNTAREVHEA*T-------------------SISSQIDQAEERISETEDQLNDIRHEDKIKEKRMKRNKQSLQEIWDYVKRP 1157 22221589999999999987555...................59************************************************* PP EE.EEES----TT--HHHHHHHHHHHH.HHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEE CS Transposase_22 191 nl.rliGvdesedeqlkklenilnkii.eenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPi 281 nl Gv+es++e+ +klen+l+ ii e nfPnl+++an++iqei+rtP+r++s+ra++r+ii+r+ k+++kdk+l+a rekG+ t+kGkPi T273751_2 1158 NL*L-TGVPESDKENETKLENTLQYII*E-NFPNLERQANIQIQEIQRTPQRYSSRRATPRYIIIRFPKAEKKDKMLRAPREKGKDTYKGKPI 1248 *554.5******************98777.9************************************************************** PP EEEE---HHHHHHHHHHHHHHHHHHHTT---E CS Transposase_22 282 rltadlsaetlkarrewtdviqilkekkfqPr 313 rl+ lsaetl+a +w + lk + f P T273751_2 1249 RLAVALSAETLQAEENWDQYSTFLKKRIFNPE 1280 *************************9999996 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.2 2.9 3.6e-41 3e-37 1 222 [] 1705 1961 .. 1705 1961 .. 0.94 Alignments for each domain: == domain 1 score: 128.2 bits; conditional E-value: 3.6e-41 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCS.BB-GG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsv.pleel 88 ipK++ +++Rpisl++++ k+lnkl+a++++++++k++++nq+gf pg + + ++ +++l++++ + k++l++++ +kaFd++ +l + T273751_2 1705 IPKHTrdtrkIENFRPISLMNINAKILNKLLANQIQQHIKKVIHHNQVGFIPGMQGWFNIhksiNVILHINRTNDKNHLIISIVAEKAFDKI*HL-FM 1801 788888899999*************************************************9999****************************99.88 PP GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS. CS RVT_1 89 lrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks. 176 l++l++++++ + +++i+ ++ ++ +++ +ng++ e ++ k+g++qG+++S +lfn++++ l r +r++ ++v+l+++aDD++++ ++ T273751_2 1802 LKTLNNLGIDGTYLKIIRGIYDNPIANIILNGKKLEAFPLKTGTKQGCPISSILFNIVLEILTRAIRQEKeikgiqigrEEVKLSLFADDMIVYLENc 1899 9********************************99*********************************99***************************8 PP HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....................ESSEEETTEEE CS RVT_1 177 keelqelleaveewlkesglkinpeKtklvlf............sg....kseevkyLGvtl 222 ++ +l++ ++++ k sg+kin + ++++l+ + +++++y G++l T273751_2 1900 IISAPKLIKLISNFSKVSGYKINVQNSQAFLYtnngqtehqvlsELlfttAKKRITYIGIQL 1961 888***************************99988887777665114567999999999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2533 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 677 (0.0415185); expected 326.1 (0.02) Passed bias filter: 194 (0.0118975); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.73 # Mc/sec: 9926.69 // Query: T273751_3 [L=2532] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-07 29.6 0.1 6.2e-07 28.8 0.1 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 0.1 3.8e-11 6.2e-07 1 16 [. 2427 2442 .. 2427 2445 .. 0.93 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 3.8e-11 DUF1725 1 kFagKWMELEnIILSE 16 +Fag+WM+LE+IILS+ T273751_3 2427 SFAGTWMKLETIILSK 2442 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2532 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.71 # Mc/sec: 10202.28 // Query: T077407_1 [L=1854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1854 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 195 (0.0119588); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.70 # Mc/sec: 7577.11 // Query: T077407_2 [L=1853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.62 # Mc/sec: 8550.19 // Query: T077407_3 [L=1853] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1853 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.67 # Mc/sec: 7912.12 // Query: T338865_1 [L=847] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (847 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 685 (0.0420091); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 45 (0.00275972); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.74 # Mc/sec: 3274.49 // Query: T338865_2 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.074 11.9 7.8 0.32 9.8 7.7 1.9 2 DuoxA Dual oxidase maturation factor 0.23 11.6 3.7 0.64 10.1 3.7 1.7 1 Glycophorin_A Glycophorin A 3.5 6.8 5.4 5.3 6.2 5.4 1.2 1 DUF4191 Domain of unknown function (DUF4191) Domain annotation for each model (and alignments): >> DuoxA Dual oxidase maturation factor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.091 4.9e+02 35 73 .. 11 49 .. 11 54 .. 0.90 2 ? 9.8 7.7 6e-05 0.32 14 70 .. 682 735 .. 672 765 .. 0.82 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.091 DuoxA 35 GirgkerlftlvrvllslfigavilvvnfgseWevgevk 73 G r+ er+ rv+l l + a + + g+ W++g+ + T338865_2 11 GNRSSERISNWPRVTLLLNVYAYEMQSLQGTGWQSGSPT 49 67999*****************************99865 PP == domain 2 score: 9.8 bits; conditional E-value: 6e-05 DuoxA 14 sliiiilvflilavsfllIlPGirgkerlftlvrvllslfigavilvvnfgseWevg 70 + i+ii++f+i+ + l Il + ++t++ ++++++ig++i+vv f s+W+++ T338865_2 682 HHITIIIIFIIITIIILTILIIVF---IITTITIITTTITIGTIIIVVIFLSSWSQS 735 456777777777777777775555...56788889999****************875 PP >> Glycophorin_A Glycophorin A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 3.7 0.00012 0.64 49 84 .. 673 709 .. 640 716 .. 0.80 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00012 XSSSSSSS-TTHHH.HHHHHHHHHHHHHHHHHHHHHT CS Glycophorin_A 49 eqlvhdFselvitl.iifgvmAgvigtillisYlirR 84 ++++h + it iif ++ +i+til+i ++i T338865_2 673 HHYHHYHRHHHITIiIIFIIITIIILTILIIVFIITT 709 56777777777765167899999**********9976 PP >> DUF4191 Domain of unknown function (DUF4191) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 5.4 0.00097 5.3 23 70 .. 682 729 .. 666 736 .. 0.67 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.00097 DUF4191 23 kkllwlllaaflvvvvvfvvlglllgslilllilgillgllvalivlt 70 ++++ +++ +++ ++++++++ +++ ++i+++ + i +g+++ ++++ T338865_2 682 HHITIIIIFIIITIIILTILIIVFIITTITIITTTITIGTIIIVVIFL 729 33444444445555555555555556899999*******999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1712 (0.104992); expected 326.1 (0.02) Passed bias filter: 398 (0.0244082); expected 326.1 (0.02) Passed Vit filter: 96 (0.0058874); expected 16.3 (0.001) Passed Fwd filter: 15 (0.000919907); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.63 # Mc/sec: 3841.69 // Query: T338865_3 [L=846] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (846 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1601 (0.0981847); expected 326.1 (0.02) Passed bias filter: 447 (0.0274132); expected 326.1 (0.02) Passed Vit filter: 266 (0.016313); expected 16.3 (0.001) Passed Fwd filter: 51 (0.00312768); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.81u 0.43s 00:00:02.24 Elapsed: 00:00:00.90 # Mc/sec: 2689.18 // Query: T124832_1 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 237 (0.0145345); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.52 # Mc/sec: 2206.14 // Query: T124832_2 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.55 # Mc/sec: 2085.81 // Query: T124832_3 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 287 (0.0176009); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.66 # Mc/sec: 1733.84 // Query: T212036_1 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 267 (0.0163743); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.40u 0.40s 00:00:01.79 Elapsed: 00:00:00.73 # Mc/sec: 14257.12 // Query: T212036_2 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 13.4 0.1 0.032 12.9 0.1 1.1 1 NPR2 Nitrogen permease regulator 2 Domain annotation for each model (and alignments): >> NPR2 Nitrogen permease regulator 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 2e-06 0.032 238 274 .. 2264 2300 .. 2258 2306 .. 0.88 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2e-06 NPR2 238 LtkqciqhLlyYkcielldiFqfsniYaptneigdFl 274 L+ + + hL++ +ci+ll i f +i +pt++i F+ T212036_2 2264 LISEKMWHLVFRSCISLLRIMAFGSIHVPTKDIISFF 2300 6777789**************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.70 # Mc/sec: 14868.14 // Query: T212036_3 [L=3638] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3638 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.64 # Mc/sec: 16262.03 // Query: T090234_1 [L=3690] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3690 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 230 (0.0141052); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.70 # Mc/sec: 15080.66 // Query: T090234_2 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.28s 00:00:01.58 Elapsed: 00:00:00.73 # Mc/sec: 14456.99 // Query: T090234_3 [L=3689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:00.75 # Mc/sec: 14071.47 // Query: T175026_1 [L=1808] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1808 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.67 # Mc/sec: 7719.97 // Query: T175026_2 [L=1807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-19 69.1 0.0 5.3e-19 68.5 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA pol 1.8e-10 40.6 0.1 3.1e-10 39.8 0.1 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.012 15.8 0.0 0.022 14.9 0.0 1.4 1 RVP Retroviral aspartyl protease 0.035 14.6 0.0 0.077 13.6 0.0 1.5 1 Asp_protease_2 Aspartyl protease 0.046 14.1 0.0 0.084 13.3 0.0 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.5 0.0 1.6e-22 5.3e-19 3 222 .] 1231 1395 .. 1229 1395 .. 0.88 Alignments for each domain: == domain 1 score: 68.5 bits; conditional E-value: 1.6e-22 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS RVT_1 3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100 K + g++R++ d++++n+++++ l + ++ + s + + a++++ lDlk+aF+ +pl+ +++ l+af pt T175026_2 1231 KLN-GQWRLV----QDLRLINEAVIS---------LYPAVTNTYTLLS------------QITEAAEWFTVLDLKDAFFCIPLHSDSQFLFAFEDPTD 1302 666.888986....699999999998.........5555555555511............134668******************************65 PP .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS RVT_1 101 linliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198 + + +++lpqG+ P lf ++ + l ++++ +g +l+Y+DD+l++ +s+ + q++ ++ ++l++ g+k+ T175026_2 1303 ----------------------HTSQIMWTVLPQGFRDRPHLFGQALAQDLGHFSS--PGTLVLQYMDDLLLAPSSEASSQQATLDLLNFLANQGYKV 1376 ......................48999****************************9..8*************************************** PP EGGG-EEE.....ESSEEETTEEE CS RVT_1 199 npeKtklvlfsgkseevkyLGvtl 222 + +K +l+l ++vkyLG++l T175026_2 1377 SRSKAQLCL-----QQVKYLGLIL 1395 ********5.....*******975 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.8 0.1 9.5e-14 3.1e-10 121 187 .. 841 907 .. 841 922 .. 0.89 Alignments for each domain: == domain 1 score: 39.8 bits; conditional E-value: 9.5e-14 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlk.eayrrytpydpedpeqkasvalsfiaqsasdirkklqrl 187 ++p n + + +++qgkee+p+afle+ + ea r+ytp pe+ + + + fi qsa+dir+klq+ T175026_2 841 KKPMNYSMMSTITQGKEENPSAFLEQ-L*EALRKYTPRSPESLKGQLILKDKFIIQSAADIRRKLQKQ 907 689**********************7.6669************99999999**************985 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 6.8e-06 0.022 4 29 .. 1046 1071 .. 1043 1079 .. 0.92 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 6.8e-06 SSEEEEEETTEEEEEEE-TTBSSEEE CS RVP 4 rPllkvkiggkyieallDtGAdatvi 29 +P++++ i+g+ + +llDtGA +v+ T175026_2 1046 EPRVRLTIEGQETDFLLDTGAAFSVL 1071 7**********************998 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.4e-05 0.077 1 23 [. 1049 1071 .. 1049 1074 .. 0.88 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.4e-05 Asp_protease_2 1 vpvtinGkpvrfllDTGasttli 23 v++ti+G++++fllDTGa +++ T175026_2 1049 VRLTIEGQETDFLLDTGAAFSVL 1071 6789**************98765 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 2.6e-05 0.084 2 23 .. 1050 1071 .. 1049 1073 .. 0.90 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2.6e-05 EEEETTEEEEEEEETT-SS-EE CS gag-asp_proteas 2 evtingkpvkflvDTGAsstii 23 +ti+g++++fl+DTGA +++ T175026_2 1050 RLTIEGQETDFLLDTGAAFSVL 1071 689**************99886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.70 # Mc/sec: 7385.03 // Query: T175026_3 [L=1807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0038 16.6 0.0 0.0065 15.9 0.0 1.4 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.041 13.4 0.1 0.076 12.6 0.1 1.4 1 Gag_MA Matrix protein (MA), p15 Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 8e-07 0.0065 3 122 .. 714 842 .. 712 843 .. 0.72 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 8e-07 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllea.....rknvpgedgrptqlpne...v.deafpltrpd 93 pfs sdl + k++ fs+dp + ++ + t + +w d ll+ l+ +e++ l a n++ + r t + + + ++a+p p+ T175026_3 714 VPFSISDLKQIKADLGKFSDDPDRYIHALQGLGQTFDLAWRDVMLLLDQTLAFNEKNAALAAA*efgdTWNLNQVNDRMTPEERDkfpIgQQAIPSMDPH 813 69**********************************************9999999999887554443333444433333322211111224667777777 PP Gag_p30 94 wdyetaegreslklyrqlllaglrgaarr 122 wd + +g s k +l glr ++ T175026_3 814 WDLDLDHGDWSRKHLLTCVLEGLRRIRKS 842 77777777777666666777777766655 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 9.4e-06 0.076 35 85 .. 578 629 .. 573 647 .. 0.79 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 9.4e-06 HHHHHTTGGGGSS....S--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHH CS Gag_MA 35 itlCsseWptlnv....gWPreGtfdltviakvkskvfspGkeGhpDqvpYivtW 85 +C++ Wp ++ +WP+eG+ + ++i+++ +f++ +eG +pY+ ++ T175026_3 578 FFFCTMAWPQYSLsdgeKWPPEGSTNYNTILQLD--LFCK-REGKWSEIPYVQAF 629 579******997644447*************986..6666.78888999999764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.68 # Mc/sec: 7602.24 // Query: T126057_1 [L=924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 52 (0.00318901); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.48 # Mc/sec: 5507.10 // Query: T126057_2 [L=924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-07 29.4 0.6 6.1e-07 28.5 0.6 1.5 1 IN_DBD_C Integrase DNA binding domain Domain annotation for each model (and alignments): >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.5 0.6 3.7e-11 6.1e-07 4 48 .. 222 265 .. 219 267 .. 0.93 Alignments for each domain: == domain 1 score: 28.5 bits; conditional E-value: 3.7e-11 EEEE-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 4 mvkwkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 v w+dl +++W +++++gr ++cv P ++++++w+P R ++ T126057_2 222 LVWWRDLITKSWET-GKIITWGRSYACVSPGQNQQLIWIPSRHLK 265 699*********95.89*************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.60 # Mc/sec: 4405.68 // Query: T126057_3 [L=923] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00014 21.8 0.4 0.00027 20.8 0.4 1.4 1 HERV-K_REC Rec (regulator of expression encoded by corf) o ------ inclusion threshold ------ 2 7.9 5.1 15 5.0 0.1 2.7 2 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain Domain annotation for each model (and alignments): >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.4 3.4e-08 0.00027 23 77 .. 302 356 .. 296 359 .. 0.85 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 3.4e-08 HERV-K_REC 23 stkkaepptwaqlkkltqlatkylentkvtqtpesmllaalmivsmvvalvmnas 77 t +++pptw q+kkl+q+a l + t +++a + +++ +a v + s T126057_3 302 NTCRTQPPTWGQIKKLSQMAEENLRKAGQPVTMSNFMVAMIAVITTASADVDPNS 356 577899****************999998888988999999999998888887665 PP >> LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.0018 15 110 157 .. 616 661 .. 608 668 .. 0.89 2 ? 3.4 1.2 0.0057 47 65 129 .. 789 856 .. 786 872 .. 0.82 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0018 EEEEEEEEEEEEEEEEETTCGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS LBP_BPI_CETP 110 lvlseCsssigsislsllgglgslldlltnllektlkkvlesqlCpvi 157 +++s+ +++ ++s++ ++ s++ +++ ++ +++ + +C + T126057_3 616 ITSSRTRTTYRHLSIQSPHP--SITASVHASFQPFIHASVHASVCLSL 661 57888899999*********..***********************765 PP == domain 2 score: 3.4 bits; conditional E-value: 0.0057 EEEEEEEEEEEEE..EEEECE.CCEEEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEEEEEETTC CS LBP_BPI_CETP 65 llliiplslkisg..klpllg.sflelavgvsitaelalerdeqGrprlvlseCsssigsislsllgg 129 + l+ip+s+++s+ + p+ + l+ +s+ a+++l ++ + + ls+ s + s+sls+l+ T126057_3 789 ICLSIPASVHASVhpSIPASVhASVHLSIPLSVHASVHLSIPASVHASVMLSNPASVHASVSLSILHP 856 56788888888886677777668888899999999999999999999999999999999999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (923 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.49 # Mc/sec: 5388.87 // Query: T049497_1 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1120 (0.0686864); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 38 (0.00233043); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.71 # Mc/sec: 3606.26 // Query: T049497_2 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1310 (0.0803385); expected 326.1 (0.02) Passed bias filter: 245 (0.0150251); expected 326.1 (0.02) Passed Vit filter: 59 (0.0036183); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 3765.36 // Query: T049497_3 [L=894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 14.7 0.0 0.011 14.7 0.0 2.0 2 PHO4 Phosphate transporter family Domain annotation for each model (and alignments): >> PHO4 Phosphate transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 3.4 0.14 2.3e+03 64 86 .. 128 150 .. 114 153 .. 0.73 2 ? 14.7 0.0 6.6e-07 0.011 113 163 .. 200 255 .. 184 767 .. 0.70 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.14 PHO4 64 mlgmlaallaaavwlllatylgl 86 +++m+a++l av+ll+a++l++ T049497_3 128 VMLMMAVMLLMAVMLLMAMMLKM 150 36778888888888888888876 PP == domain 2 score: 14.7 bits; conditional E-value: 6.6e-07 PHO4 113 gglvkivlswvlsPllggllaallfllvrrlil.....lkaalkllpllvlltvai 163 ++ i+++++++++l +++ a+++++v +l + + +l ++ +l+++++++ T049497_3 200 AVILMIAVMLMMAVMLMMVMMAVILMMVVMLLMavmllMAVMLLMVVMLMAVMLFM 255 23444444444444444333333333333221222211111111222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1404 (0.0861033); expected 326.1 (0.02) Passed bias filter: 258 (0.0158224); expected 326.1 (0.02) Passed Vit filter: 107 (0.006562); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.78 # Mc/sec: 3278.95 // Query: T111370_1 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 8557.25 // Query: T111370_2 [L=2034] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2034 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 322 (0.0197473); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.60 # Mc/sec: 9698.21 // Query: T111370_3 [L=2033] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2033 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.62 # Mc/sec: 9380.75 // Query: T230577_1 [L=2149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-25 87.7 0.0 1.4e-24 86.4 0.0 1.6 2 rve Integrase core domain 5.3e-15 54.9 2.7 1.5e-14 53.5 2.7 1.9 1 Integrase_Zn Integrase Zinc binding domain 2.1e-08 34.3 0.0 4.1e-08 33.4 0.0 1.4 1 RNase_H RNase H 9.9e-06 25.4 0.1 1.8e-05 24.5 0.1 1.3 1 GP41 Retroviral envelope protein ------ inclusion threshold ------ 0.022 14.8 0.0 0.035 14.2 0.0 1.2 1 DDE_Tnp_IS240 DDE domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 3.2 1e+04 23 60 .. 446 481 .. 437 485 .. 0.76 2 ! 86.4 0.0 4.3e-28 1.4e-24 4 118 .. 574 683 .. 572 684 .. 0.95 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 3.2 rve 23 kayllvviddfsrlilaeavsdemdastviallerava 60 ay+ ++ d r ++ ++++d+ ++ ll++ v+ T230577_1 446 SAYVVQATKDIERALIKYIMDDQ--LNPLFNLLQQNVR 481 589999999****9999999998..6666666666665 PP == domain 2 score: 86.4 bits; conditional E-value: 4.3e-28 rve 4 pgelwqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpq 103 p+ lwq+Dv++++++++ ++++v +d++s++i+a + + e ++s+v + l + g pe+v +Dng+ y+ska+++fl++++i+++ +++q T230577_1 574 PNVLWQMDVMHVPSFGKL--SFVHVTVDTYSHFIWATCQTGE-STSHVKRHLLSCFPVMGV--PEKVKTDNGPGYCSKAVQKFLNQWKITHTIGILYNSQ 668 999**********66555..**********************.9999*9999988888888..************************************* PP rve 104 dnGkvErfnrtlkde 118 ++++Er+nrtlk++ T230577_1 669 GQAIIERTNRTLKAQ 683 *************86 PP >> Integrase_Zn Integrase Zinc binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.5 2.7 4.7e-18 1.5e-14 1 37 [. 520 556 .. 520 557 .. 0.99 Alignments for each domain: == domain 1 score: 53.5 bits; conditional E-value: 4.7e-18 Integrase_Zn 1 AkesHelhHqNakaLrkkFkitreqAreIVqsCptCq 37 A+e+H+l+H+Na +L++kF it++q ++IVq+C +Cq T230577_1 520 AQELHALTHVNAIGLKNKFDITWKQTKNIVQHCTQCQ 556 9***********************************8 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.0 1.3e-11 4.1e-08 60 141 .. 436 516 .. 429 518 .. 0.84 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 1.3e-11 SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHH CS RNase_H 60 sdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkea 141 ++++ni++DS Yvv+ +t++++r+ + + + + p+ n l++ + ++ ++++h+++H++ +k Ne+aD l+++a T230577_1 436 FNQSINIVSDSAYVVQ-ATKDIERALIKYIMDDQLN-PLFN-LLQQNV--RKRNFPFYITHIRAHTNLpgplTKANEQADLLVSSA 516 5789************.9999999977777666666.8999.777777..456888***********98888789*******9986 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 0.1 5.7e-09 1.8e-05 34 108 .. 1297 1369 .. 1283 1379 .. 0.84 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 5.7e-09 HHHHHHHHHSSCHH...........HHHHHHHHE..CCSHHHCXXXXXXX...XX..HHHHHHHHHHXHHHHHHHHH CS GP41 34 dkklearvnaleevvlalG.qevaslktqlklrChanykliCvTkvpynase.sWervkkhlegiWnntevsldlsk 108 +k+ + ++ +l++ ++G + ++sl+ +lrC n CvT+ yn+se W+ v+ hl+g ++ ld+sk T230577_1 1297 IKNWQTKLMILDKL--SFGwERLMSLEYLFQLRCDWNTSDFCVTPQAYNESEhHWDMVRCHLQGGE--DNLTLDISK 1369 57889999999998..77746799***************************************954..444455554 PP >> DDE_Tnp_IS240 DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 1.1e-05 0.035 4 115 .. 578 689 .. 575 696 .. 0.91 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.1e-05 DDE_Tnp_IS240 4 wrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkylnnr 98 w++D v Gk +++ vD + + + + t +k+ l ++ + pe++ tD + y +a++++ ++ + ++ + + + + T230577_1 578 WQMDVMHVPSFGKLSFVHVTVDTYSHFIWATCQTGESTSHVKRHLLSCFPVM-GVPEKVKTDNGPGYcSKAVQKFLNQWKITHTIGILYNSQGQAI 672 888888888899****************************************.*********99999457*******99999******99999*** PP DDE_Tnp_IS240 99 iEsdhrtlKkrlrptrg 115 iE+ +rtlK++l ++++ T230577_1 673 IERTNRTLKAQLVKQKK 689 **********9977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 291 (0.0178462); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.72 # Mc/sec: 8538.78 // Query: T230577_2 [L=2149] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-08 32.1 0.4 1.2e-07 31.2 0.4 1.4 1 RVT_thumb Reverse transcriptase thumb domain ------ inclusion threshold ------ 0.011 15.7 0.4 0.019 14.8 0.4 1.3 1 Borrelia_orfX Orf-X protein Domain annotation for each model (and alignments): >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.4 1.5e-11 1.2e-07 1 27 [. 173 199 .. 173 202 .. 0.94 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 1.5e-11 ES-B----SSSEBHHHHHHHHHHHHHH CS RVT_thumb 1 pqklqlrrdklktLNDfQkLlgdINWi 27 pqk+++r+d+lk LN+fQkLlgd NWi T230577_2 173 PQKIEIRKDTLKALNEFQKLLGDTNWI 199 6*************************9 PP >> Borrelia_orfX Orf-X protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.4 2.4e-06 0.019 52 127 .. 570 645 .. 564 650 .. 0.84 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2.4e-06 Borrelia_orfX 52 evyalitsgkqmlltflnldvlnmfm.flltlfpifswplftlenqhvtvfniycfvfllqeslkplkqimdlvila 127 evy+l+ gk m t+l l+ + m l+ + + + e+ + +iy++vfl e++k lkq m +v + T230577_2 570 EVYVLMCYGKWMSCTYLHLENCHLSM*QLILIHISYG-QPARQEKVLPMLKDIYYLVFLSWEFQKKLKQTMGQVTVV 645 9******************988888887765554454.5567788888999********************988665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2149 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.70 # Mc/sec: 8782.75 // Query: T230577_3 [L=2148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-65 218.4 2.8 8.3e-65 217.5 2.8 1.4 1 HERV-K_env_2 Retro-transcribing viruses envelope glycoprotei 1.3e-28 98.7 5.6 2.7e-28 97.7 5.6 1.5 1 HERV-K_REC Rec (regulator of expression encoded by corf) o 4.7e-16 58.1 0.0 1.5e-15 56.5 0.0 1.9 1 RVT_thumb Reverse transcriptase thumb domain 1.2e-06 27.5 1.2 2.9e-06 26.4 1.2 1.6 1 IN_DBD_C Integrase DNA binding domain 3.5e-06 26.9 2.1 0.0038 17.0 0.0 2.2 2 GP41 Retroviral envelope protein Domain annotation for each model (and alignments): >> HERV-K_env_2 Retro-transcribing viruses envelope glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 217.5 2.8 2.5e-68 8.3e-65 5 138 .. 898 1027 .. 898 1027 .. 0.98 Alignments for each domain: == domain 1 score: 217.5 bits; conditional E-value: 2.5e-68 HERV-K_env_2 5 mdnpievyvndsvwvpgpiddrcpakpeeegmminisigyryppiclgrapgclmpavqnwlvevptvspisrftyhmvsgmslrprvnylqdfs 99 mdnpiev vn+s wvpgp+dd+cpa+pe egmm+nisigy ypp+clg+apgclmp+ qnwlvevptvs srftyhmvsgms ++n lqd s T230577_3 898 MDNPIEVDVNNSAWVPGPTDDCCPAQPE-EGMMMNISIGYPYPPVCLGKAPGCLMPTTQNWLVEVPTVSATSRFTYHMVSGMS---QINNLQDPS 988 9**************************7.6****************************************************9...79******* PP HERV-K_env_2 100 yqrslkfrpkgkpcpkeipkeskntevlvweecvansav 138 yqrsl+ rpkgk+cpkeipkesk evlv ecva++av T230577_3 989 YQRSLQCRPKGKACPKEIPKESKSPEVLVCGECVADTAV 1027 ***********************************9987 PP >> HERV-K_REC Rec (regulator of expression encoded by corf) of HERV-K-113 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.7 5.6 8.2e-32 2.7e-28 6 87 .] 802 884 .. 798 884 .. 0.95 Alignments for each domain: == domain 1 score: 97.7 bits; conditional E-value: 8.2e-32 HERV-K_REC 6 thkmnkmvtseeqmklpstkkaepptw.aqlkkltqlatk.ylentkvtqtpesmllaalmivsmvvalvmnaseeaatieyga 87 t ++nkmv seeq klps k ae p aqlkkltqla k lentkvt tpe mllaalmivs vv+l+ +a+++aa+++y+a T230577_3 802 TRQVNKMVISEEQKKLPSIKEAELP-I*AQLKKLTQLAKKkSLENTKVTPTPENMLLAALMIVSTVVSLPKSAGAAAANYTYWA 884 7899*******************99.888*********7527*****************************************7 PP >> RVT_thumb Reverse transcriptase thumb domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.5 0.0 4.7e-19 1.5e-15 22 65 .. 200 243 .. 199 244 .. 0.97 Alignments for each domain: == domain 1 score: 56.5 bits; conditional E-value: 4.7e-19 HHHHHHTTSTT---HHHHHT...TTSSSSTTSBE---HHHHHHH CS RVT_thumb 22 gdINWirpylgittaeLkpLFniLrGdsdltsprqLTeeAeeaL 65 gdINWi p+lgi+t+ +++LF+ LrGds+l+s+r+LT+eA++++ T230577_3 200 GDINWIWPTLGIPTYAMSNLFSFLRGDSELNSERTLTPEATKEI 243 9****************************************997 PP >> IN_DBD_C Integrase DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 1.2 8.8e-10 2.9e-06 7 48 .. 741 781 .. 737 783 .. 0.91 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 8.8e-10 E-SSTTS--EEEEEEEEEETTEEEE..E-SS-EEEEEGGGEE CS IN_DBD_C 7 wkdllsglWkGPdpvLikgrGavcvFPqdasdikwvPeRlvr 48 wkd ++ W +v+++grG +cv P +++ ++w+P R ++ T230577_3 741 WKDNKNKTWEM-GKVITWGRGFACVSPGENQLPVWIPTRHLK 781 99999999984.79*************************998 PP >> GP41 Retroviral envelope protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 1.2e-06 0.0038 2 53 .. 1264 1315 .. 1263 1338 .. 0.94 2 ! 8.9 0.6 0.00033 1.1 111 201 .] 1472 1560 .. 1469 1560 .. 0.70 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 1.2e-06 XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH...... CS GP41 2 aavslaqevqaatlvnelsknvlkaletQeeidkklearvnaleevvlalGq 53 a ++l +vq+a+ vn+ +kn k + Q +id+kl +++n l + v+ +G+ T230577_3 1264 AGIALHSSVQTAEYVNDWQKNSSKLWNSQIQIDQKLANQINDLRQTVIWMGE 1315 5689********************************************9998 PP == domain 2 score: 8.9 bits; conditional E-value: 0.00033 HHHHHHHHHCHHHHHHHTCHHHHH.HHHHHGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHXXXXX.........XXX.......XXXXXX CS GP41 111 neiediqnqqektlqeldkldklaqslannfkslnWvsyikltvliiavgvalrvvlivllllPvlfkslaksl.qqvraevqllllkkkkg 201 ++i ++++++ + ++ +++ k a sl n ++ Wv+ i+ ++ i++ + ++v l +lll+ ++ l ++ qq a v + +l k+kg T230577_3 1472 EKIFEASKAHLNLVPGTETIVKAADSLTNLKPV-TWVKSIRSFT-IVNFIL-ILVCLFCLLLVYRCIQQLQRDSnQQEWAIVTMVVLSKRKG 1560 578899999999999999999999999876655.8***877665.555544.5566666666654577776655055556667777877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 641 (0.0393107); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.84 # Mc/sec: 7315.55 // Query: T316416_1 [L=4141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 252 (0.0154544); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.32s 00:00:01.85 Elapsed: 00:00:00.82 # Mc/sec: 14447.19 // Query: T316416_2 [L=4141] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4141 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.43s 00:00:01.81 Elapsed: 00:00:00.73 # Mc/sec: 16228.35 // Query: T316416_3 [L=4140] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4140 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 283 (0.0173556); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.35s 00:00:01.90 Elapsed: 00:00:00.69 # Mc/sec: 17164.98 // Query: T371839_1 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-37 126.9 0.4 7.8e-37 126.4 0.4 1.2 1 DDE_1 DDE superfamily endonuclease Domain annotation for each model (and alignments): >> DDE_1 DDE superfamily endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 126.4 0.4 4.8e-41 7.8e-37 1 176 [] 634 821 .. 634 821 .. 0.94 Alignments for each domain: == domain 1 score: 126.4 bits; conditional E-value: 4.8e-41 DDE_1 1 kerltvllcanaagsekLkplvigkgksprafknektkkkldvey..ksnrkawltssifeeWLekvfdkrve.....kaekrkvlLllddsrshe.tve 92 k+rlt ll+anaag+ kLkp++i+++k+ +a kn kl+ + k+++k w+t+++f++W+++++++++e k+ k+lLl+d++++ + T371839_1 634 KDRLTFLLGANAAGDFKLKPMLIYHSKTVKALKN---YAKLTLPIl*KWKNKVWMTAHLFTAWFTEYLKPTLEtycseKKIPFKILLLIDNAPGPPrDLR 730 689*******************************...555555555667899*****************************************9994555 PP DDE_1 93 lsecelqniklvflPasstsllqPldqgvvselKarYrrqllkallalqnrlsk..........eqkkltllnalkfikkAwnavsketIksaw 176 ++++i++vf+Pa++ts+l P+dqg+ ++K++Y ++++ +++ + nr+s+ + + +l+a+k+i ++w++v+ +t++++w T371839_1 731 E---MYREINAVFMPANTTSILYPMDQGITLTFKSYYLKNTFCKAITAINRDSSdgsgqnklktYWRGFAILDAIKNIHDSWEEVKISTLTEVW 821 5...9************************************************9*********99**************************999 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.56 # Mc/sec: 5793.18 // Query: T371839_2 [L=1133] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.015 15.2 0.0 0.035 14.0 0.0 1.6 1 HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain Domain annotation for each model (and alignments): >> HTH_Tnp_Tc5 Tc5 transposase DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 2.2e-06 0.035 11 36 .. 509 536 .. 507 551 .. 0.79 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.2e-06 HHHHHC.CT---SCHHHHHHHHHHH..H CS HTH_Tnp_Tc5 11 WirqlrergapitgelirekAqela..s 36 Wi++++ +++p++++li++k + l+ T371839_2 509 WIEDQTSHNIPLSQSLIQRKTLTLFhsM 536 *********************9986431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1133 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.56 # Mc/sec: 5686.53 // Query: T371839_3 [L=1133] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1133 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 4911.09 // Query: T239001_1 [L=921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 274 (0.0168036); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 4182.26 // Query: T239001_2 [L=921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 143 (0.00876978); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 4971.37 // Query: T239001_3 [L=921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.61 # Mc/sec: 4319.38 // Query: T089832_1 [L=1869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1385 (0.0849381); expected 326.1 (0.02) Passed bias filter: 165 (0.010119); expected 326.1 (0.02) Passed Vit filter: 119 (0.00729793); expected 16.3 (0.001) Passed Fwd filter: 21 (0.00128787); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.26u 0.55s 00:00:03.80 Elapsed: 00:00:00.90 # Mc/sec: 5940.99 // Query: T089832_2 [L=1869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1498 (0.091868); expected 326.1 (0.02) Passed bias filter: 227 (0.0139213); expected 326.1 (0.02) Passed Vit filter: 145 (0.00889243); expected 16.3 (0.001) Passed Fwd filter: 26 (0.00159451); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.17u 0.58s 00:00:04.75 Elapsed: 00:00:01.25 # Mc/sec: 4277.51 // Query: T089832_3 [L=1869] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1869 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1288 (0.0789893); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 85 (0.00521281); expected 16.3 (0.001) Passed Fwd filter: 14 (0.00085858); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.20u 0.49s 00:00:02.69 Elapsed: 00:00:00.92 # Mc/sec: 5811.84 // Query: T250070_1 [L=762] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (762 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.60 # Mc/sec: 3633.25 // Query: T250070_2 [L=761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4268.81 // Query: T250070_3 [L=761] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (761 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 170 (0.0104256); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4186.71 // Query: T256187_1 [L=2298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 194 (0.0118975); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11953.07 // Query: T256187_2 [L=2298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11953.07 // Query: T256187_3 [L=2298] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2298 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 11953.07 // Query: T276339_1 [L=1046] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1046 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 947 (0.0580768); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 143 (0.00876978); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.57 # Mc/sec: 5159.36 // Query: T276339_2 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 547 (0.0335459); expected 326.1 (0.02) Passed bias filter: 218 (0.0133693); expected 326.1 (0.02) Passed Vit filter: 36 (0.00220778); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.51 # Mc/sec: 5861.90 // Query: T276339_3 [L=1045] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.34 10.8 5.1 0.51 10.2 5.1 1.2 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmembr 1.9 8.7 10.6 2.7 8.2 10.6 1.1 1 EPL1 Enhancer of polycomb-like 3.9 6.7 10.3 5.7 6.2 10.3 1.1 1 SpoIIP Stage II sporulation protein P (SpoIIP) Domain annotation for each model (and alignments): >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 5.1 9.3e-05 0.51 113 175 .. 142 193 .. 71 210 .. 0.58 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 9.3e-05 ---------.--------------------------------------SS---TTGGG--... CS Neur_chan_memb 113 sevkdnekklssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstql 175 + +++ ++++ +++++++ +++++++ q+++++++++ +++++++++p++q+ T276339_3 142 Q-----------QQPHQHQQQQQQQPHQQQQQQQPHQHQHQQQQQPHQQQHQHQQQQQPHQQQ 193 2...........222222222222222222222222222222222222222222222222211 PP >> EPL1 Enhancer of polycomb-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 10.6 0.0005 2.7 29 85 .. 143 193 .. 135 249 .. 0.53 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0005 EPL1 29 eeiseknsnkensqqavetgvdkkeenekh.qviaaakkkesssasskeslkkeelkL 85 +++ +++++++++q ++++++++ + +++ q ++ ++++++++ ++++ +++ T276339_3 143 QQP-HQHQQQQQQQPHQQQQQQQPHQHQHQqQ----QQPHQQQHQHQ--QQQQPHQQQ 193 111.1122222222233333333222222211....11111111111..112222222 PP >> SpoIIP Stage II sporulation protein P (SpoIIP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 10.3 0.001 5.7 21 69 .. 142 192 .. 121 213 .. 0.41 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.001 SpoIIP 21 eapaeesekeekekeeeeeeekeeeeeeeikkeek..eeekekeedseeee 69 ++++++++++++++ ++++++++ +++ +++++ ++++++++++ +++ T276339_3 142 QQQPHQHQQQQQQQPHQQQQQQQPHQHQHQQQQQPhqQQHQHQQQQQPHQQ 192 222222222222222222222222222222222220022222222111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1045 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 2367 (0.145161); expected 326.1 (0.02) Passed bias filter: 910 (0.0558077); expected 326.1 (0.02) Passed Vit filter: 339 (0.0207899); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.37u 0.40s 00:00:01.77 Elapsed: 00:00:00.65 # Mc/sec: 4599.33 // Query: T188812_1 [L=580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 118 (0.0072366); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 3253.49 // Query: T188812_2 [L=580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 258 (0.0158224); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.50 # Mc/sec: 3318.56 // Query: T188812_3 [L=580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (580 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.50 # Mc/sec: 3318.56 // Query: T244791_1 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 1464.74 // Query: T244791_2 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.51 # Mc/sec: 1436.02 // Query: T244791_3 [L=256] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (256 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 295 (0.0180915); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1494.64 // Query: T226677_1 [L=800] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.4 7.0 4.8 1.9 6.5 4.8 1.0 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 4.8 0.00012 1.9 137 191 .. 385 444 .. 363 475 .. 0.46 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.00012 CDC45 137 eeeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeee.........edeeersrkrrr 191 eee e+++e eee+ + + ++++k++++++eeeee ++ +++r r+r T226677_1 385 EEEREEEEEGEEERGGGG----GRGGGRRSRKEEEEEQEEEEEkegereeegREGMRKARGRTR 444 222222222222222222....222222222222111111111111111111222233333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (800 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 706 (0.0432969); expected 326.1 (0.02) Passed bias filter: 397 (0.0243469); expected 326.1 (0.02) Passed Vit filter: 76 (0.00466086); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.54 # Mc/sec: 4238.27 // Query: T226677_2 [L=799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.03 13.9 0.2 0.05 13.1 0.2 1.3 1 FAM176 FAM176 family 0.074 11.7 0.1 0.1 11.2 0.1 1.1 1 Presenilin Presenilin 9.4 5.8 6.7 17 5.0 6.7 1.3 1 RR_TM4-6 Ryanodine Receptor TM 4-6 Domain annotation for each model (and alignments): >> FAM176 FAM176 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.2 9.2e-06 0.05 38 93 .. 366 419 .. 350 432 .. 0.51 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 9.2e-06 FAM176 38 Lcllviriscrkdlkrlskkkkklkeesekasededeeeeeeeedsseseaeeels 93 ++ll + +s +++ ++ +++ +k+++ k++e+e+eeeeee +++ ++ + T226677_2 366 FILLCVVVSRKEKEEEGGGRRRGRKKKKGKKKEEEEEEEEEEGGAGRRKKKNK--R 419 45566666666666655555555555554444444444444333333333222..2 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 1.9e-05 0.1 206 279 .. 352 426 .. 351 458 .. 0.55 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 1.9e-05 Presenilin 206 rneeifpaLiYsaevvvlaaeeea.ekaevakaeeeeeaekkeeeaseeskeeeseeesseksassseseeeeee 279 r+ +i+p L+Y ++ + l ++ ek+e++ +++ +++kk ++++ee++eee+e + ++++++++++++++e T226677_2 352 RSGSILPGLLYGTNFILLCVVVSRkEKEEEGGGRRRGRKKKKGKKKEEEEEEEEEEGGAGRRKKKNKRRRRRKKE 426 56789*********9998766555333333333333333333333333333322222222222222222222221 PP >> RR_TM4-6 Ryanodine Receptor TM 4-6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 6.7 0.0031 17 106 152 .. 378 424 .. 362 434 .. 0.35 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0031 RR_TM4-6 106 peaeaeekadaengekeekekekeeakkeseeeeeekkkkkkakskk 152 +e+e ++ +++++k +k++e+ee+++e+ + +kkk+k+++++k T226677_2 378 KEEEGGGRRRGRKKKKGKKKEEEEEEEEEEGGAGRRKKKNKRRRRRK 424 12222122222222222222222222222222222222223333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 878 (0.0538452); expected 326.1 (0.02) Passed bias filter: 470 (0.0288237); expected 326.1 (0.02) Passed Vit filter: 118 (0.0072366); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.56 # Mc/sec: 4081.79 // Query: T226677_3 [L=799] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (799 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 529 (0.032442); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 4312.84 // Query: T053231_1 [L=863] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (863 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 4747.88 // Query: T053231_2 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 141 (0.00864712); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.51 # Mc/sec: 4835.36 // Query: T053231_3 [L=862] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (862 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 124 (0.00760456); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 4742.38 // Query: T172334_1 [L=2587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 140 (0.0085858); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 12984.15 // Query: T172334_2 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.022 14.1 0.0 0.037 13.4 0.0 1.2 1 Gag_p30 Gag P30 core shell protein Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 2.3e-06 0.037 83 121 .. 781 819 .. 776 824 .. 0.86 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.3e-06 Gag_p30 83 vdeafpltrpdwdyetaegreslklyrqlllaglrgaar 121 v +p t p+wd + +g ++l+ yr++ll gl+ + T172334_2 781 VRIQLPGTDPQWDSNERQGMQRLNWYREALLEGLKKGSS 819 6678899***************************87654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 13210.90 // Query: T172334_3 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-39 134.5 1.6 3e-19 69.2 0.0 2.2 2 Gag_p30 Gag P30 core shell protein 4.8e-22 77.9 0.2 9.5e-22 76.9 0.2 1.4 1 Gag_MA Matrix protein (MA), p15 2e-06 27.9 0.0 3.9e-06 26.9 0.0 1.4 1 RVP Retroviral aspartyl protease 5.2e-05 23.3 0.0 9.7e-05 22.5 0.0 1.4 1 RNase_H RNase H ------ inclusion threshold ------ 0.012 16.1 0.1 0.023 15.3 0.1 1.4 1 Asp_protease_2 Aspartyl protease 0.045 14.2 0.1 0.081 13.4 0.1 1.4 1 gag-asp_proteas gag-polyprotein putative aspartyl protease Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.1 0.5 4.1e-21 1.1e-17 2 69 .. 699 766 .. 698 779 .. 0.93 2 ! 69.2 0.0 1.1e-22 3e-19 117 192 .. 820 895 .. 816 902 .. 0.92 Alignments for each domain: == domain 1 score: 64.1 bits; conditional E-value: 4.1e-21 Gag_p30 2 ywpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvllearknv 69 y pf a+dl nwk+n ps++e+pq++ l+++i+ th+ tw dc qll l+ +er+rvl a k + T172334_3 699 YQPFNAADLLNWKNNTPSYTEKPQAIIDLLQTIIQTHNTTWADCHQLLMYLFNMDERRRVLQAATKWL 766 89***********************************************************9998865 PP == domain 2 score: 69.2 bits; conditional E-value: 1.1e-22 Gag_p30 117 rgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqe 192 + a++ tn+ kv ev+qgk+espa f erl eay r tp+dp++pe++ ++++++ +sa dir+klq+ g+ + T172334_3 820 KKGAQKATNVNKVSEVIQGKDESPAQFYERLCEAYCRCTPFDPDSPENQRMISMTLVSRSAEDIRRKLQKQAGFAG 895 4567889**************************************************************9887765 PP >> Gag_MA Matrix protein (MA), p15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.9 0.2 3.5e-25 9.5e-22 2 108 .. 480 582 .. 478 601 .. 0.87 Alignments for each domain: == domain 1 score: 76.9 bits; conditional E-value: 3.5e-25 XX---HHHHHHHTHHHHHHHHHHTT----HHHHHHHHHTTGGGGSSS--TT----HHHHHHHHHHHTSSCCCS-GGGHHHHHHHHHHHHS--TTT-XXXX CS Gag_MA 2 qtvstPLslllehfkdvraraknlsvevrkkklitlCsseWptlnvgWPreGtfdltviakvkskvfspGkeGhpDqvpYivtWrsLvedPPpwvkpflp 101 q++ tPL +l++fk + + +v++ +kl+tlC+ +Wp+l+vgWP eG+ d ++++kv +kv Gk G+p q pYi tW +Lv PP w++ + T172334_3 480 QSKPTPLGTMLKNFK--KGFNGDYGVNMTPGKLRTLCEIDWPALEVGWPSEGSLDRSLVSKVWHKVT--GKPGYPAQFPYIDTWLQLVLGPPWWLRGQAA 575 8899**********9..5677899******************************************9..89************************98777 PP XXXXXXX CS Gag_MA 102 skplpkk 108 + ++k T172334_3 576 AVLMAKG 582 6555444 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 0.0 1.4e-09 3.9e-06 3 56 .. 1021 1070 .. 1019 1090 .. 0.87 Alignments for each domain: == domain 1 score: 26.9 bits; conditional E-value: 1.4e-09 SSSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEE CS RVP 3 qrPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatet 56 ++P++++ +ggk i +l+DtGA+++v++ P + k++ + G++g++ + T172334_3 1021 KEPMVRMTVGGKDIGFLVDTGAEHSVVTTPVTPLS----KKTIDIIGATGISAK 1070 68********************************9....999999999999844 PP >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.0 3.6e-08 9.7e-05 5 54 .. 1340 1390 .. 1337 1397 .. 0.86 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 3.6e-08 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHH CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAviea 54 +Y+DGs + n +ge+++g+ v+ + a +++l++ +++++aEL+A+i a T172334_3 1340 ELYVDGSNFVNsQGERCVGYaVVTLD-AVIEAKSLPQGTSAQKAELIALIRA 1390 68*******99999******766766.557778999**************98 PP >> Asp_protease_2 Aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.3 0.1 8.3e-06 0.023 1 26 [. 1025 1050 .. 1025 1059 .. 0.91 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 8.3e-06 Asp_protease_2 1 vpvtinGkpvrfllDTGasttlispe 26 v+ t++Gk++ fl+DTGa ++++++ T172334_3 1025 VRMTVGGKDIGFLVDTGAEHSVVTTP 1050 6789******************9975 PP >> gag-asp_proteas gag-polyprotein putative aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.1 3e-05 0.081 1 25 [. 1025 1049 .. 1025 1054 .. 0.90 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 3e-05 EEEEETTEEEEEEEETT-SS-EEEH CS gag-asp_proteas 1 vevtingkpvkflvDTGAsstiise 25 v +t+ gk++ flvDTGA+++++++ T172334_3 1025 VRMTVGGKDIGFLVDTGAEHSVVTT 1049 5689******************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 313 (0.0191954); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.56 # Mc/sec: 12979.13 // Query: T221723_1 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 319 (0.0195634); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 11214.45 // Query: T221723_2 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 425 (0.026064); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 11214.45 // Query: T221723_3 [L=2156] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2156 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 385 (0.0236109); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 11214.45 // Query: T219235_1 [L=493] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (493 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.52 # Mc/sec: 2712.29 // Query: T219235_2 [L=492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.50 # Mc/sec: 2815.06 // Query: T219235_3 [L=492] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (492 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.52 # Mc/sec: 2706.79 // Query: T367345_1 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 166 (0.0101803); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4373.77 // Query: T367345_2 [L=795] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (795 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.53 # Mc/sec: 4291.24 // Query: T367345_3 [L=794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (794 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 235 (0.0144119); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 4543.00 // Query: T086175_1 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1638 (0.100454); expected 326.1 (0.02) Passed bias filter: 377 (0.0231203); expected 326.1 (0.02) Passed Vit filter: 287 (0.0176009); expected 16.3 (0.001) Passed Fwd filter: 72 (0.00441555); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.39s 00:00:02.17 Elapsed: 00:00:00.69 # Mc/sec: 4540.01 // Query: T086175_2 [L=1095] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1095 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1428 (0.0875751); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 112 (0.00686864); expected 16.3 (0.001) Passed Fwd filter: 33 (0.00202379); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.57 # Mc/sec: 5401.05 // Query: T086175_3 [L=1094] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1094 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1393 (0.0854287); expected 326.1 (0.02) Passed bias filter: 273 (0.0167423); expected 326.1 (0.02) Passed Vit filter: 147 (0.00901509); expected 16.3 (0.001) Passed Fwd filter: 53 (0.00325034); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.60 # Mc/sec: 5216.25 // Query: T337177_1 [L=6480] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6480 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1553 (0.095241); expected 326.1 (0.02) Passed bias filter: 393 (0.0241016); expected 326.1 (0.02) Passed Vit filter: 303 (0.0185821); expected 16.3 (0.001) Passed Fwd filter: 41 (0.00251441); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.90u 0.50s 00:00:04.40 Elapsed: 00:00:00.87 # Mc/sec: 21308.25 // Query: T337177_2 [L=6479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1527 (0.0936465); expected 326.1 (0.02) Passed bias filter: 494 (0.0302956); expected 326.1 (0.02) Passed Vit filter: 418 (0.0256347); expected 16.3 (0.001) Passed Fwd filter: 34 (0.00208512); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.68u 0.44s 00:00:05.12 Elapsed: 00:00:00.90 # Mc/sec: 20594.80 // Query: T337177_3 [L=6479] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (6479 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1837 (0.112658); expected 326.1 (0.02) Passed bias filter: 310 (0.0190114); expected 326.1 (0.02) Passed Vit filter: 240 (0.0147185); expected 16.3 (0.001) Passed Fwd filter: 38 (0.00233043); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 4.17u 0.51s 00:00:04.68 Elapsed: 00:00:00.96 # Mc/sec: 19307.62 // Query: T040698_1 [L=1719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 292 (0.0179075); expected 326.1 (0.02) Passed bias filter: 192 (0.0117748); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.65 # Mc/sec: 7565.80 // Query: T040698_2 [L=1719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.59 # Mc/sec: 8335.20 // Query: T040698_3 [L=1719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 238 (0.0145959); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.69 # Mc/sec: 7127.20 // Query: T175229_1 [L=1689] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1689 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 498 (0.0305409); expected 326.1 (0.02) Passed bias filter: 287 (0.0176009); expected 326.1 (0.02) Passed Vit filter: 30 (0.00183981); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.67 # Mc/sec: 7211.85 // Query: T175229_2 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 391 (0.0239789); expected 326.1 (0.02) Passed bias filter: 208 (0.012756); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.66 # Mc/sec: 7316.79 // Query: T175229_3 [L=1688] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1688 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.68 # Mc/sec: 7101.59 // Query: T219660_1 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 85 (0.00521281); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.63 # Mc/sec: 5621.76 // Query: T219660_2 [L=1238] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1238 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.64 # Mc/sec: 5533.92 // Query: T219660_3 [L=1237] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1237 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 134 (0.00821783); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.66 # Mc/sec: 5361.89 // Query: T288678_1 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 76 (0.00466086); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.62 # Mc/sec: 1693.43 // Query: T288678_2 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 570 (0.0349565); expected 326.1 (0.02) Passed bias filter: 285 (0.0174782); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 1874.87 // Query: T288678_3 [L=367] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 60 (0.00367963); expected 326.1 (0.02) Passed bias filter: 43 (0.00263707); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.54 # Mc/sec: 1944.30 // Query: T278100_1 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 653 (0.0400466); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.65 # Mc/sec: 2464.72 // Query: T278100_2 [L=560] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (560 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 963 (0.059058); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.70 # Mc/sec: 2288.66 // Query: T278100_3 [L=559] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (559 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 723 (0.0443395); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.62 # Mc/sec: 2579.36 // Query: T199602_1 [L=2005] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2005 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.61 # Mc/sec: 9403.22 // Query: T199602_2 [L=2004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.69 # Mc/sec: 8308.85 // Query: T199602_3 [L=2004] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2004 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 155 (0.0095057); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.64 # Mc/sec: 8957.97 // Query: T277489_1 [L=3475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3475 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 175 (0.0107322); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.31u 0.38s 00:00:01.69 Elapsed: 00:00:00.78 # Mc/sec: 12745.36 // Query: T277489_2 [L=3474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 178 (0.0109162); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.71 # Mc/sec: 13997.92 // Query: T277489_3 [L=3474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3474 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.30s 00:00:01.60 Elapsed: 00:00:00.72 # Mc/sec: 13803.50 // Query: T221962_1 [L=3570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.73 # Mc/sec: 13990.63 // Query: T221962_2 [L=3570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.27s 00:00:01.61 Elapsed: 00:00:00.64 # Mc/sec: 15958.07 // Query: T221962_3 [L=3570] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3570 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 152 (0.00932172); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.30u 0.41s 00:00:01.71 Elapsed: 00:00:00.78 # Mc/sec: 13093.80 // Query: T378388_1 [L=460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-29 100.1 1.8 6.8e-29 99.4 0.6 1.9 2 Transposase_1 Transposase (partial DDE domain) ------ inclusion threshold ------ 0.1 12.4 0.1 0.18 11.6 0.1 1.3 1 Alpha-2-MRAP_N Alpha-2-macroglobulin RAP, N-terminal domain Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.28 2.3e+03 54 71 .. 40 57 .. 37 61 .. 0.77 2 ! 99.4 0.6 8.4e-33 6.8e-29 15 80 .] 286 351 .. 286 351 .. 0.98 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.28 Transposase_1 54 itsevYaqqldklrqklq 71 i +++Y+q+l + +l+ T378388_1 40 ISGQKYTQFLSHIGIELR 57 7899******98766665 PP == domain 2 score: 99.4 bits; conditional E-value: 8.4e-33 Transposase_1 15 getpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 +e+pk++pkp+lhqkk m+tVwWsa++li+y+f++p+et+tse+Yaqq ++++qklq+++ vnr T378388_1 286 EEAPKHFPKPNLHQKKAMATVWWSAASLIHYSFMNPSETVTSEKYAQQFNEMHQKLQCLQLTFVNR 351 699**********************************************************99997 PP >> Alpha-2-MRAP_N Alpha-2-macroglobulin RAP, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.1 2.2e-05 0.18 11 63 .. 322 373 .. 313 375 .. 0.89 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 2.2e-05 Alpha-2-MRAP_N 11 aekkaakKysreaNekkkkskreldkeFriaklnlvWeKAkrrltevklksLy 63 +e+ +++Ky ++ Ne ++ +++ l+ F +k+ ++ A+ +++++ l++Ly T378388_1 322 SETVTSEKYAQQFNEMHQ-KLQCLQLTFVNRKVPILHDNAQPHIAQSTLQKLY 373 4556789********998.999******************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 344 (0.0210965); expected 326.1 (0.02) Passed bias filter: 219 (0.0134306); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.63 # Mc/sec: 2088.86 // Query: T378388_2 [L=459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 476 (0.0291917); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.61 # Mc/sec: 2152.66 // Query: T378388_3 [L=459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.63 # Mc/sec: 2084.32 // Query: T187869_1 [L=2587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-48 163.4 1.0 7.6e-48 162.8 1.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly 3.7e-38 131.2 3.2 6e-38 130.5 3.2 1.3 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.8 1.0 9.3e-52 7.6e-48 1 210 [. 1328 1556 .. 1328 1584 .. 0.95 Alignments for each domain: == domain 1 score: 162.8 bits; conditional E-value: 9.3e-52 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpleell 89 ipK+g ++++Rpisl+++ k+lnk++a+ ++++++kl+ ++q+gf pg + + ++ ++++++++ k k+++++++D +k Fd+++ ++ l T187869_1 1328 IPKPGrdttkKENFRPISLMNTEAKILNKILANLIQQHIKKLIYHDQVGFIPGMQGWFNIcksiNVIQHINRTKDKNHMIISIDAEKTFDKIQQPFML 1425 899999999999***************************************************99999999999999********************* PP GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESS.H CS RVT_1 90 rkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililsks.k 177 ++ ++++++ + +++i++++ ++++++ +ng++ e ++ k+g++qG++lSPllfn++++ l re+r++ ++v+l+++aDD++++ ++ T187869_1 1426 KTPNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKRGTRQGCPLSPLLFNIVLEVLAREIRQEKeikgiqlgkEEVKLSLFADDMIVYLENpI 1523 ********************************99*********************************99***************************66 PP HHHHHHHHHHHHHHHHTT--BEGGG-EEE.... CS RVT_1 178 eelqelleaveewlkesglkinpeKtklvlfsg 210 ++q+ll+ ++++ k sg+kin +K++++l+++ T187869_1 1524 VSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 1556 77***************************8733 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.5 3.2 7.4e-42 6e-38 201 280 .. 610 689 .. 609 691 .. 0.98 Alignments for each domain: == domain 1 score: 130.5 bits; conditional E-value: 7.4e-42 TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEE CS Transposase_22 201 edeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkP 280 + e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+rekGrvt kG P T187869_1 610 DGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRMPQRKSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGSP 689 6799**************************************************************************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2587 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:00.76 # Mc/sec: 9738.11 // Query: T187869_2 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-73 245.7 10.1 1.2e-46 159.1 0.2 3.4 3 Transposase_22 L1 transposable element 1.1e-06 28.0 0.7 2.4e-06 26.9 0.7 1.5 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.5 4.0 5.6e-20 4.6e-16 1 79 [. 442 516 .. 442 540 .. 0.89 2 ! 29.8 0.0 3e-11 2.4e-07 171 205 .. 578 612 .. 573 625 .. 0.89 3 ! 159.1 0.2 1.5e-50 1.2e-46 278 368 .] 697 789 .. 690 789 .. 0.99 Alignments for each domain: == domain 1 score: 58.5 bits; conditional E-value: 5.6e-20 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk.dfykelkelieskakele.alkekee 79 +Gkk+ rk++nsk++++s+P+ke+sssPa +++ ++df+elr+e++ + ++y+el+e+i++++ke++ ++k+ + T187869_2 442 MGKKQ---SRKTGNSKTQSASPPPKERSSSPAM--AQSWTENDFDELREEGF-R*SNYSELQEEIRTNGKEVKsFEKKIRR 516 79999...9************************..9***************9.7779****************99998765 PP == domain 2 score: 29.8 bits; conditional E-value: 3e-11 HHHHHHHHHHHHHHHHHTTTEEEEES----TT--H CS Transposase_22 171 krkkileqslqviqdtvkrPnlrliGvdesedeql 205 k++k++ slq+ +d+vkrPnl liGv+es++ T187869_2 578 KKIKRNGPSLQETWDYVKRPNLHLIGVPESDVTGR 612 899****************************9765 PP == domain 3 score: 159.1 bits; conditional E-value: 1.5e-50 TEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSXXXXXXXX CS Transposase_22 278 GkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdryqaleqar 368 GkPirltadlsaetl+arrew+++++ilkek++qPr++yPakls+i++Geik+f d+++lrd+++trPalk+llke ++er++ryq+l++++ T187869_2 697 GKPIRLTADLSAETLQARREWGPIFNILKEKNVQPRISYPAKLSFISEGEIKYFTDRQMLRDFVTTRPALKELLKEalNMERNNRYQPLQKHA 789 9*****************************************************************************************996 PP >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 0.7 3e-10 2.4e-06 1 16 [. 2055 2070 .. 2055 2072 .. 0.94 Alignments for each domain: == domain 1 score: 26.9 bits; conditional E-value: 3e-10 DUF1725 1 kFagKWMELEnIILSE 16 +F+g+WM+LE+IILS+ T187869_2 2055 SFVGTWMKLETIILSK 2070 7**************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 435 (0.0266773); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.74 # Mc/sec: 9997.44 // Query: T187869_3 [L=2586] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-09 38.4 0.0 1.9e-09 37.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 1.1e-07 31.6 1.6 2.2e-07 30.6 1.6 1.6 1 Exo_endo_phos_2 Endonuclease-reverse transcriptase ------ inclusion threshold ------ 5.4 7.6 6.4 45 4.7 1.7 2.6 2 DUF2203 Uncharacterized conserved protein (DUF2203) Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.6 0.0 3.5e-13 1.9e-09 1 113 [] 821 1040 .. 821 1040 .. 0.85 Alignments for each domain: == domain 1 score: 37.6 bits; conditional E-value: 3.5e-13 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECSEEEEE............... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrfpltsl............... 77 lt Nvng ++ + ++ +la+++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l + + + + T187869_3 821 LTLNVNG----LNAPIKRHRLANWIKSQDPSVCCIQEIHLTCRDTHRLKIkgWRKIYQANGKQKKAGVAILASEKTDFKptkikrdkeghyimv 910 699****....7778899*******************99998877777768866677888899999**99999999666788899999***999 PP .......................................EEEEEE-SS.............................................. CS .......................................xxxxxxxxx.............................................. RF Exo_endo_phos 78 .......................................vivlGDfNa.............................................. 86 i++GDfN+ T187869_3 911 kgsiqqgeqtilniyapntgaprfikqvlsdlqkdldsqTIIMGDFNTplstldrstrqkvnkdtqelnsalhqtdridiyrtlhpksteytff 1004 9999999*****************************************9999999999999999999999999999888888888888888888 PP ........-BEEEEEEHHHHTTEEEEEEECCH.SSB CS ........xxxxxxxxxxxxxxxxxxxxxxxx.xxx RF Exo_endo_phos 87 ........rlDrilaskelatersgvldepla.SDH 113 +D+i+ sk+l + + + + SDH T187869_3 1005 svphhtysKIDHIVGSKALLSKCKRTEIITNClSDH 1040 888888888899999985544444444433337888 PP >> Exo_endo_phos_2 Endonuclease-reverse transcriptase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 1.6 4.1e-11 2.2e-07 2 118 .. 920 1043 .. 919 1044 .. 0.77 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 4.1e-11 Exo_endo_phos_2 2 liisvYippsseelenllstlekllselkskkiiilGDfNakhplWgsedtds.kergeeLidfleehslsll...nllkeg.ptfeseng. 87 +i ++Y p++ + + +++ l++l ++l+s ++ii+GDfN + + +++++ ++ +eL + l++ + + ++k++ tf s + T187869_3 920 TILNIYAPNTG-APRFIKQVLSDLQKDLDS-QTIIMGDFNTPLSTLDRSTRQKvNKDTQELNSALHQTDRIDIyrtLHPKSTeYTFFSVPHh 1009 58899*99999.666666666666667765.79**************9888879*******9999998765334443334334666544444 PP Exo_endo_phos_2 88 .ssiiDltltsdnlaks..leleeedlgSDHrpi 118 s iD ++ s+ l+ + ++ ++++SDH++i T187869_3 1010 tYSKIDHIVGSKALLSKckRTEIITNCLSDHSAI 1043 58***************98666779******998 PP >> DUF2203 Uncharacterized conserved protein (DUF2203) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.2 0.0095 52 39 80 .. 491 532 .. 460 537 .. 0.83 2 ? 4.7 1.7 0.0082 45 23 71 .. 1118 1162 .. 1109 1241 .. 0.81 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0095 DUF2203 39 akaeaekseaaeleaeleeleaeieelveeieelGvevkdle 80 +++ + +++++ ++++l++l+++++e++++i++ +kdl T187869_3 491 QTTPSYRRKFEPMAKKLKALKKKLDEWITRITNAEKSLKDLM 532 3334445559999**************************985 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0082 DUF2203 23 ralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeiee 71 ++ r+++ +l ++l+e +++++++++a++++e+++++ae++e ie T187869_3 1118 KQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKE----IET 1162 566778888888888888887665566666666666655554....333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2586 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1089 (0.0667852); expected 326.1 (0.02) Passed bias filter: 260 (0.0159451); expected 326.1 (0.02) Passed Vit filter: 41 (0.00251441); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.43u 0.38s 00:00:01.81 Elapsed: 00:00:00.82 # Mc/sec: 9022.08 // Query: T153796_1 [L=3577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.29s 00:00:01.57 Elapsed: 00:00:00.74 # Mc/sec: 13828.63 // Query: T153796_2 [L=3577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3577 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 101 (0.00619404); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.79 # Mc/sec: 12953.40 // Query: T153796_3 [L=3576] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3576 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.34u 0.39s 00:00:01.73 Elapsed: 00:00:00.76 # Mc/sec: 13460.96 // Query: T294571_1 [L=807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 154 (0.00944438); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.57 # Mc/sec: 3980.50 // Query: T294571_2 [L=807] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (807 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.56 # Mc/sec: 4122.66 // Query: T294571_3 [L=806] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (806 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.61 # Mc/sec: 3780.05 // Query: T099604_1 [L=5835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.61u 0.37s 00:00:01.98 Elapsed: 00:00:00.71 # Mc/sec: 23511.19 // Query: T099604_2 [L=5835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5835 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 286 (0.0175396); expected 326.1 (0.02) Passed bias filter: 104 (0.00637802); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.96u 0.45s 00:00:02.41 Elapsed: 00:00:00.79 # Mc/sec: 21130.31 // Query: T099604_3 [L=5834] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5834 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.94u 0.44s 00:00:02.38 Elapsed: 00:00:00.86 # Mc/sec: 19407.07 // Query: T352939_1 [L=4349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 62 (0.00380228); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.58u 0.36s 00:00:01.94 Elapsed: 00:00:00.87 # Mc/sec: 14300.86 // Query: T352939_2 [L=4349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.54u 0.33s 00:00:01.87 Elapsed: 00:00:00.79 # Mc/sec: 15749.05 // Query: T352939_3 [L=4349] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4349 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.48u 0.33s 00:00:01.81 Elapsed: 00:00:00.77 # Mc/sec: 16158.12 // Query: T273787_1 [L=4665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 139 (0.00852447); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.55u 0.42s 00:00:01.97 Elapsed: 00:00:00.77 # Mc/sec: 17332.17 // Query: T273787_2 [L=4665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:00.72 # Mc/sec: 18535.79 // Query: T273787_3 [L=4665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4665 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 144 (0.00883111); expected 326.1 (0.02) Passed bias filter: 70 (0.0042929); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.59u 0.34s 00:00:01.93 Elapsed: 00:00:00.69 # Mc/sec: 19341.70 // Query: T182048_1 [L=310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.56 # Mc/sec: 1555.89 // Query: T182048_2 [L=310] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (310 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 249 (0.0152705); expected 326.1 (0.02) Passed bias filter: 131 (0.00803385); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.54 # Mc/sec: 1642.33 // Query: T182048_3 [L=309] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (309 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.57 # Mc/sec: 1524.13 // Query: T212323_1 [L=1062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 348 (0.0213418); expected 326.1 (0.02) Passed bias filter: 159 (0.00975101); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.57 # Mc/sec: 5238.28 // Query: T212323_2 [L=1062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.64 # Mc/sec: 4747.19 // Query: T212323_3 [L=1062] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1062 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 148 (0.00907641); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.64 # Mc/sec: 4747.19 // Query: T368642_1 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 318 (0.019502); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.44u 0.40s 00:00:01.84 Elapsed: 00:00:00.76 # Mc/sec: 12824.80 // Query: T368642_2 [L=3407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3407 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 110 (0.00674598); expected 326.1 (0.02) Passed Vit filter: 20 (0.00122654); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:00.85 # Mc/sec: 11466.88 // Query: T368642_3 [L=3406] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3406 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 330 (0.0202379); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 24 (0.00147185); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.53u 0.37s 00:00:01.90 Elapsed: 00:00:00.65 # Mc/sec: 14990.75 // Query: T140993_1 [L=359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 116 (0.00711395); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.62 # Mc/sec: 1656.51 // Query: T140993_2 [L=359] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (359 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2139.66 // Query: T140993_3 [L=358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (358 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 187 (0.0114682); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2008.19 // Query: T126458_1 [L=5895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.39u 0.31s 00:00:01.70 Elapsed: 00:00:00.56 # Mc/sec: 30115.34 // Query: T126458_2 [L=5894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.28u 0.28s 00:00:01.56 Elapsed: 00:00:00.53 # Mc/sec: 31814.59 // Query: T126458_3 [L=5894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.3 6.5 9.6 18 5.3 1.6 3.4 2 Toxin_18 Conotoxin O-superfamily Domain annotation for each model (and alignments): >> Toxin_18 Conotoxin O-superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 1.3 0.0029 48 17 30 .. 2502 2515 .. 2500 2516 .. 0.95 2 ? 5.3 1.6 0.0011 18 17 29 .. 5420 5432 .. 5418 5433 .. 0.96 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 0.0029 Toxin_18 17 CSGAcSaaFgyCLp 30 C GA Sa ++CLp T126458_3 2502 CNGAISAHCNLCLP 2515 9************9 PP == domain 2 score: 5.3 bits; conditional E-value: 0.0011 Toxin_18 17 CSGAcSaaFgyCL 29 CSGA Sa ++CL T126458_3 5420 CSGAISAHCNLCL 5432 ************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.57 # Mc/sec: 29071.95 // Query: T016395_1 [L=2126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-05 25.3 0.0 2e-05 24.6 0.0 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 0.0 1.2e-09 2e-05 8 83 .. 21 92 .. 15 100 .. 0.87 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 1.2e-09 rve 8 wqvDvtvgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytskaf 83 +qvD+t+++ + gg++yll + ++s+++ a+++++e +a +v+++l + + ++g p+ + s n +++ ++ T016395_1 21 LQVDFTEMP--KCGGNKYLLGLVCTYSGWVEAYPTRTE-KAREVTRVLLQDFIPRFGL-PLQIGSHNRLVFVADSV 92 79*******..9999***********************.**********999999999.99888877766666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 123 (0.00754324); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.46 # Mc/sec: 13222.01 // Query: T016395_2 [L=2126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2126 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.49 # Mc/sec: 12412.50 // Query: T016395_3 [L=2125] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2125 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.48 # Mc/sec: 12665.13 // Query: T040991_1 [L=1437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 19.4 0.0 0.0022 18.4 0.0 1.4 1 Ank_2 Ankyrin repeats (3 copies) 0.0039 17.5 0.0 0.014 15.7 0.0 1.9 2 Ank Ankyrin repeat 0.0041 17.4 0.0 0.012 16.0 0.0 1.8 1 Ank_3 Ankyrin repeat ------ inclusion threshold ------ 0.026 14.8 0.0 0.056 13.7 0.0 1.5 1 Ank_5 Ankyrin repeats (many copies) 0.14 12.7 0.1 0.69 10.4 0.1 2.1 2 Ank_4 Ankyrin repeats (many copies) Domain annotation for each model (and alignments): >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 6.7e-07 0.0022 53 80 .. 116 143 .. 104 147 .. 0.83 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 6.7e-07 Ank_2 53 dgrtaLhlAarsghleivklLlekgadi 80 + rtaLh+A+ +gh e+v +L+++++++ T040991_1 116 SRRTALHWACVNGHAEVVTFLVDRKCQL 143 5689999999999999999999877665 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 4.2e-06 0.014 3 24 .. 118 139 .. 117 149 .. 0.85 2 ? -3.7 0.0 5 1.6e+04 5 9 .. 1283 1287 .. 1283 1317 .. 0.43 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 4.2e-06 BBHHHHHHHHTTHHHHHHHHTT CS Ank 3 nTPLHlAatngkkriiklLLhG 24 +T+LH+A+ ng+++++ +L+++ T040991_1 118 RTALHWACVNGHAEVVTFLVDR 139 6*****************9954 PP == domain 2 score: -3.7 bits; conditional E-value: 5 HHHHH CS Ank 5 PLHlA 9 PLHl T040991_1 1283 PLHLS 1287 89983 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 3.6e-06 0.012 3 28 .. 118 142 .. 116 145 .. 0.87 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 3.6e-06 Ank_3 3 etpLhlAarsgrpeivkfLlenlgad 28 +t+Lh+A+ +g+ e+v fL++ + + T040991_1 118 RTALHWACVNGHAEVVTFLVD-RKCQ 142 8*******************9.6654 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 1.7e-05 0.056 17 44 .. 118 145 .. 113 149 .. 0.86 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.7e-05 Ank_5 17 ntpLhlAakggalevvrlLlargadlnl 44 t+Lh+A+ +g++evv +L++r + l++ T040991_1 118 RTALHWACVNGHAEVVTFLVDRKCQLDV 145 3*******************99888776 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 1.4 4.7e+03 36 54 .. 56 74 .. 50 74 .. 0.81 2 ? 10.4 0.1 0.00021 0.69 2 26 .. 118 142 .. 115 147 .. 0.71 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 1.4 Ank_4 36 etalhiAakrgnveilklL 54 +++A+++ + ++l +L T040991_1 56 GHSFINAVSNKSEQMLYFL 74 567999******9999987 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00021 Ank_4 2 ltaLhyaaisgrlelvrlLlekgad 26 +taLh+a+ g+ e+v +L++++ + T040991_1 118 RTALHWACVNGHAEVVTFLVDRKCQ 142 6777777777777777777776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 190 (0.0116522); expected 326.1 (0.02) Passed bias filter: 78 (0.00478352); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.49 # Mc/sec: 8389.82 // Query: T040991_2 [L=1437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1437 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 142 (0.00870845); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.46 # Mc/sec: 8936.98 // Query: T040991_3 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 157 (0.00962836); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.47 # Mc/sec: 8740.75 // Query: T278487_1 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 268 (0.0164357); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.52 # Mc/sec: 11140.73 // Query: T278487_2 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 201 (0.0123268); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.49 # Mc/sec: 11822.82 // Query: T278487_3 [L=2025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2025 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 350 (0.0214645); expected 326.1 (0.02) Passed bias filter: 210 (0.0128787); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.50 # Mc/sec: 11586.36 // Query: T144460_1 [L=1886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-22 77.6 0.0 1.7e-21 76.8 0.0 1.4 1 RNase_H RNase H 1.5e-11 44.1 0.0 2.4e-11 43.5 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 5.7e-11 42.4 0.8 1.2e-10 41.4 0.8 1.6 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.00084 18.0 0.6 0.0013 17.3 0.6 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.8 0.0 4.2e-25 1.7e-21 5 142 .. 343 484 .. 340 485 .. 0.84 Alignments for each domain: == domain 1 score: 76.8 bits; conditional E-value: 4.2e-25 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS.ETTSSBHTT CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDSkYvvkgitqwvhrwkknawkt.tseqkpvkn 100 +Y+D s++ n +ge+ ag+ v+ + + +++l++ +++++aEL+A+i+aL+ + ++++vniytDS+Y++ +++ vh++ +++ + +s +k++k T144460_1 343 ELYVDWSSFINpQGERFAGCaVVTLG-TVVEARSLPQGTSAQKAELIAFIQALElS--EGKTVNIYTDSRYAFLTLQ--VHGALYKEKRLlNSGGKDIKY 437 68*********889999999666544.45666788899****************55..9**************9544..677654444444889999*98 PP .HHHHHHHHHCHCSSEEEEEE-SCCSSS....CHHHHHHHHHHHHHH CS RNase_H 101 .kelaellkelakkkkvqlkhvkgHaGd....pkgNemaDrlAkeaa 142 +e+ +ll+++ k++kv ++h++gH+ + N +aD A++aa T144460_1 438 qQEILQLLEAVWKPHKVAVMHCRGHQRAstlvGLRNSRADLEARKAA 484 89***********************6655678669*********998 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.5 0.0 5.8e-15 2.4e-11 125 222 .] 3 94 .. 1 94 [. 0.97 Alignments for each domain: == domain 1 score: 43.5 bits; conditional E-value: 5.8e-15 EEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 125 gryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 ++y+++++pqG+++SP++f ++ + +++ +r g++ll+Y+D +l+ + + + + +++ ++l+++g+k++++K +++ ++ v+yLG+t+ T144460_1 3 TQYTWTRVPQGFKNSPTIFGEVLARDHQKFPTRDLGCVLLQYVD-LLLGHPTAVGCAKGTDTLLRHLEDCGYKVSKKKAQIC-----QQHVHYLGFTI 94 579******************************9*********6.*************************************.....9********97 PP >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.4 0.8 2.9e-14 1.2e-10 1 38 [. 550 587 .. 550 588 .. 0.99 Alignments for each domain: == domain 1 score: 41.4 bits; conditional E-value: 2.9e-14 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaC 38 Hk+tHlG++ l++ll r++++l++++++++V+++C++C T144460_1 550 HKTTHLGQESLEKLLVRYFYILHLSALAKTVTQRCVTC 587 ************************************** PP >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.6 3.3e-07 0.0013 452 561 .] 1434 1543 .. 1420 1543 .. 0.71 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 3.3e-07 HHHHHHHHHHHHHHHHHTGGGTSHHHHHT.S--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX....XXXXXXXXXXXX CS TLV_coat 452 tslaevvlQNRRGLDlLfleeGGlCaALk.EeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllglspwlttllstilgpLlllLLiLll 548 t++ + + QNR LD L + eGG+C + CC +d g v ++i + ++ + ++ + + e+++g+ +t l+t++ ++l++ ll T144460_1 1434 TQMRNAISQNRLALDYLLAAEGGVCEKFNlTSCCLQIDDQGQVVENIVRDMTKVAHVSVQVWHEFDP-ESFFGKWFPATGGLKTLIVGVVLVIGTCLL 1530 56667789*******************99568*****999877777654333333322222222233.667776666677787777777777777778 PP XXXXXXXXXXXXX CS TLV_coat 549 GPcilnrLvqlik 561 Pc+l L q+ik T144460_1 1531 LPCVLPLLFQMIK 1543 8****99999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1886 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 235 (0.0144119); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.50 # Mc/sec: 10791.05 // Query: T144460_2 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 69 (0.00423157); expected 326.1 (0.02) Passed bias filter: 35 (0.00214645); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.53 # Mc/sec: 10174.84 // Query: T144460_3 [L=1885] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-09 36.5 0.0 7.3e-09 35.7 0.0 1.4 1 rve Integrase core domain Domain annotation for each model (and alignments): >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.7 0.0 4.5e-13 7.3e-09 36 117 .. 638 717 .. 637 719 .. 0.92 Alignments for each domain: == domain 1 score: 35.7 bits; conditional E-value: 4.5e-13 rve 36 lilaeavsdemdastvialleravarfggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkvErfnrtlkd 117 ++ a++ ++e +a +v+++l r ++g p+r+ sDng+++++ +++ ++ lg ++++++++rpq+ kvE++n t+k+ T144460_3 638 WVEAYPAQTE-KAREVTCVLLRDPIPRFGL-PLRIGSDNGPAFVADLVQKRAKVLGNTWKLHAAYRPQSSRKVESMNWTIKN 717 5778999999.8888888888888888888.*************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1885 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.54 # Mc/sec: 9986.42 // Query: T113555_1 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 133 (0.00815651); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 1230.16 // Query: T113555_2 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.50 # Mc/sec: 1230.16 // Query: T113555_3 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-13 50.6 0.0 1.3e-13 50.2 0.0 1.0 1 Mpp10 Mpp10 protein Domain annotation for each model (and alignments): >> Mpp10 Mpp10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.2 0.0 7.7e-18 1.3e-13 313 362 .. 54 103 .. 50 107 .. 0.90 Alignments for each domain: == domain 1 score: 50.2 bits; conditional E-value: 7.7e-18 Mpp10 313 lkekIkkLEeealaeKpWqLkGEvtAkdRpenSLLeedleFdrtarpaPv 362 ++ek ++ + ++ +KpW GEvtA++RpenSLLee+l+Fd+++r+ v T113555_3 54 MNEKNYTFRKRVVIKKPWLRLGEVTAQKRPENSLLEETLHFDHAVRMGTV 103 67777788899***********************************9665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 177 (0.0108549); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.49 # Mc/sec: 1255.26 // Query: T378370_1 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.54 # Mc/sec: 12969.10 // Query: T378370_2 [L=2448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2448 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.56 # Mc/sec: 12286.51 // Query: T378370_3 [L=2447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2447 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 280 (0.0171716); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.54 # Mc/sec: 12963.80 // Query: T337276_1 [L=1922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1922 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 121 (0.00742058); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 9997.30 // Query: T337276_2 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.55 # Mc/sec: 9992.10 // Query: T337276_3 [L=1921] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1921 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.53 # Mc/sec: 10369.16 // Query: T330236_1 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 244 (0.0149638); expected 326.1 (0.02) Passed bias filter: 142 (0.00870845); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.54 # Mc/sec: 13588.94 // Query: T330236_2 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-18 66.3 0.0 3.6e-18 65.1 0.0 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.1 0.0 2.2e-22 3.6e-18 12 79 .. 1993 2060 .. 1983 2061 .. 0.85 Alignments for each domain: == domain 1 score: 65.1 bits; conditional E-value: 2.2e-22 Transposase_1 12 ldkgetpkkvpkpelhqkkvmltVwWsakgliyyeflppgetitsevYaqqldklr.qklqekrpalvn 79 + + k +pk++l kkvm+tV+Wsa+gli+y+fl+pget t e+Y qq+d+++ + lq+++pal+n T330236_2 1993 VRPRSRSKALPKAKLAPKKVMVTVCWSAAGLIHYSFLNPGETSTLEKYVQQIDEMH*K-LQCLQPALIN 2060 566778999**********************************************743.4555566655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 183 (0.0112229); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.55 # Mc/sec: 13341.87 // Query: T330236_3 [L=2565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0015 18.2 1.9 0.0033 17.1 1.9 1.6 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 1.9 2e-07 0.0033 6 30 .. 1987 2011 .. 1985 2014 .. 0.93 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 2e-07 Transposase_1 6 krsaqWldkgetpkkvpkpelhqkk 30 ++ aqWld++++pk++pkp+ hqk+ T330236_3 1987 RQPAQWLDQEAAPKHFPKPNSHQKR 2011 6899*******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2565 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 199 (0.0122041); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.55 # Mc/sec: 13341.87 // Query: T005070_1 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0011 18.9 3.3 0.0015 18.4 3.3 1.2 1 Trypan_PARP Procyclic acidic repetitive protein (PARP) ------ inclusion threshold ------ 5.4 6.3 11.8 8.5 5.7 11.8 1.3 1 Lamp Lysosome-associated membrane glycoprotein (Lamp) Domain annotation for each model (and alignments): >> Trypan_PARP Procyclic acidic repetitive protein (PARP) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 3.3 1.9e-07 0.0015 79 122 .. 143 176 .. 94 203 .. 0.46 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.9e-07 Trypan_PARP 79 etepeeegeeetepeeeeepepepetepepepepepepepepGa 122 t p + + p p p + p p p p p p p p T005070_1 143 V----------TSPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSP 176 2..........222222222222222222222222222222222 PP >> Lamp Lysosome-associated membrane glycoprotein (Lamp) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 11.8 0.001 8.5 64 117 .. 113 165 .. 104 186 .. 0.51 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.001 Lamp 64 tqafvsnsttskeettcttdkpsttttthknttptttptpttPtttPtppekpe 117 t+a +++++ +++++ + +kp++t+ + k t+p+++p+p+ P+++P+p+++p+ T005070_1 113 TSAWAKDGDFISKTKQDAVQKPTKTKMAMKVTSPSPSPSPS-PSPSPSPSPSPS 165 45556666655555555555666666666666642222222.211111111111 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 446 (0.0273519); expected 326.1 (0.02) Passed bias filter: 224 (0.0137373); expected 326.1 (0.02) Passed Vit filter: 44 (0.00269839); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.51 # Mc/sec: 1424.81 // Query: T005070_2 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1453.30 // Query: T005070_3 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.50 # Mc/sec: 1453.30 // Query: T360893_1 [L=429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 220 (0.013492); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 2454.59 // Query: T360893_2 [L=429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (429 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.49 # Mc/sec: 2504.69 // Query: T360893_3 [L=428] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.2 12.1 1.5 0.55 10.7 1.5 1.7 1 RAM mRNA cap methylation, RNMT-activating mini protein Domain annotation for each model (and alignments): >> RAM mRNA cap methylation, RNMT-activating mini protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 1.5 3.4e-05 0.55 23 72 .. 82 128 .. 79 135 .. 0.57 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 3.4e-05 RAM 23 kpaekPpivepWrek.srgrggggnnRyngdrrgggdrgrerrrgrggdgr 72 p+ + p+++pW r+rg gg R + r g g+ g + r + gg+gr T360893_3 82 LPDSPGPLLSPWVVDgTRRRGAGG--RAH--RGGSGSTGAHHRARGGGGGR 128 577888*******44455555554..555..33334455555544444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (428 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 347 (0.0212805); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.51 # Mc/sec: 2400.85 // Query: T249667_1 [L=3719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 445 (0.0272906); expected 326.1 (0.02) Passed bias filter: 143 (0.00876978); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.57 # Mc/sec: 18343.84 // Query: T249667_2 [L=3719] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3719 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 360 (0.0220778); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.56 # Mc/sec: 18665.66 // Query: T249667_3 [L=3718] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 3.5 7.3 6.1 4 7.1 0.4 2.7 2 Prenyltrans Prenyltransferase and squalene oxidase repeat Domain annotation for each model (and alignments): >> Prenyltrans Prenyltransferase and squalene oxidase repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.8 0.0097 1.6e+02 16 30 .. 2537 2559 .. 2532 2562 .. 0.70 2 ? 7.1 0.4 0.00025 4 16 26 .. 3493 3503 .. 3492 3523 .. 0.87 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.0097 TTS-BBSSTTS........SBBH CS Prenyltrans 16 edGGwggrpgs........esdt 30 + GGwg+rp+ s++ T249667_3 2537 ACGGWGSRPWEglgptagsASHG 2559 78*******97666555555555 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00025 TTS-BBSSTTS CS Prenyltrans 16 edGGwggrpgs 26 +dGGwgg++g+ T249667_3 3493 KDGGWGGSWGK 3503 6*********8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3718 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 589 (0.0361217); expected 326.1 (0.02) Passed bias filter: 171 (0.0104869); expected 326.1 (0.02) Passed Vit filter: 25 (0.00153318); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.31u 0.30s 00:00:01.61 Elapsed: 00:00:00.62 # Mc/sec: 17155.75 // Query: T258917_1 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 433 (0.0265546); expected 326.1 (0.02) Passed bias filter: 178 (0.0109162); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 2893.84 // Query: T258917_2 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 92 (0.00564209); expected 326.1 (0.02) Passed bias filter: 49 (0.00300503); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.50 # Mc/sec: 3009.59 // Query: T258917_3 [L=526] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (526 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 138 (0.00846314); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 2950.58 // Query: T100534_1 [L=1893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-05 23.6 2.9 5.5e-05 23.6 2.9 1.5 2 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.0 1 1.6e+04 75 88 .. 316 329 .. 305 332 .. 0.75 2 ! 23.6 2.9 3.3e-09 5.5e-05 48 96 .. 450 500 .. 445 508 .. 0.92 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 1 BEEEEEEEEESSSC CS RnaseA 75 kvsvttCkltggsk 88 +v t C+lt+g+k T100534_1 316 RVFHTACTLTSGKK 329 667799****9987 PP == domain 2 score: 23.6 bits; conditional E-value: 3.3e-09 HHHHHGGGGSTEEECTTS..SSSEEEESSBEEEEEEEEESSSCTTC-EEEE CS RnaseA 48 leevkavCktknvtcknn..rkncheskskvsvttCkltggskkpnCkYke 96 l++++++C+t+ +c+n+ ch+s++ v+vt+C ++g++ +C+Y++ T100534_1 450 LTTIADFCRTPPLPCTNSpsMCSCHNSTHDVNVTDCFASTGTRPLHCHYQK 500 5789************9887889********************999***95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.61 # Mc/sec: 8877.95 // Query: T100534_2 [L=1893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0002 21.8 0.0 0.00037 20.9 0.0 1.4 1 RnaseA Pancreatic ribonuclease Domain annotation for each model (and alignments): >> RnaseA Pancreatic ribonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.0 2.3e-08 0.00037 6 46 .. 404 448 .. 400 449 .. 0.87 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 2.3e-08 HHHHHB-TTSSS...SSCCHHHHHHHHT.TCTSSST-SEEEEEES CS RnaseA 6 Ferqhvdskksk...tsekyCnkamkrr.nmtkkrCkkvntfihe 46 F+++h+d+++s +++yC+ +m+ r +++++C++++tfih T100534_2 404 FSTRHLDNPRSWvprGHHRYCDVMMRCRwLIYRGKCEQIHTFIHR 448 999*****99878899999*******9934566**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.68 # Mc/sec: 7964.05 // Query: T100534_3 [L=1893] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1893 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 7736.50 // Query: T143038_1 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.64 # Mc/sec: 2418.30 // Query: T143038_2 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.25 9.5 0.3 0.36 8.9 0.3 1.1 1 DUF4815 Domain of unknown function (DUF4815) Domain annotation for each model (and alignments): >> DUF4815 Domain of unknown function (DUF4815) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 0.3 2.2e-05 0.36 225 281 .. 73 129 .. 64 137 .. 0.87 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 2.2e-05 DUF4815 225 tstrleveksldletvdnEpktyssagtgtatiklarkPvksvervtitvevtetvt 281 +s ++ +s+ l++ +E++t s tgt+ +l++ Pv+ +++++ t+ t t t T143038_2 73 ASHNFSETQSQRLTRTTSESHTISGPHTGTQSDELRNAPVSDTRNLRFTRARTRTHT 129 5666777788889999*********************************99987766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 207 (0.0126947); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.66 # Mc/sec: 2345.01 // Query: T143038_3 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 129 (0.0079112); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.60 # Mc/sec: 2579.52 // Query: T263326_1 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.011 16.2 0.0 0.029 14.8 0.0 1.7 1 HTH_32 Homeodomain-like domain Domain annotation for each model (and alignments): >> HTH_32 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.0 1.8e-06 0.029 1 39 [. 237 274 .. 237 299 .. 0.91 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.8e-06 HTH_32 1 TvsrwlkRyneeGlegLkdrprrgrprklsdevrariia 39 Tv+ w k++ G e L+d++r+grp+ ++ ++ ++ii+ T263326_1 237 TVQWWFKKFC-KGDESLEDEERSGRPSEVDSDQLRAIIK 274 99*******8.5679************999988888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 261 (0.0160064); expected 326.1 (0.02) Passed bias filter: 150 (0.00919907); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.66 # Mc/sec: 3883.79 // Query: T263326_2 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 214 (0.013124); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.66 # Mc/sec: 3883.79 // Query: T263326_3 [L=896] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-20 70.3 0.1 1.8e-19 69.2 0.1 1.5 1 Transposase_1 Transposase (partial DDE domain) Domain annotation for each model (and alignments): >> Transposase_1 Transposase (partial DDE domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.2 0.1 1.1e-23 1.8e-19 17 80 .] 368 431 .. 360 431 .. 0.95 Alignments for each domain: == domain 1 score: 69.2 bits; conditional E-value: 1.1e-23 Transposase_1 17 tpkkvpkpelhqkkvmltV.wWsakgliyyeflppgetitsevYaqqldklrqklqekrpalvnr 80 + k +pk++l kvm+tV w sa+gli+y+fl+p++titse+Yaq++++++qklq+++ alvnr T263326_3 368 HSKALPKAKLAPIKVMVTV*W-SAAGLIHYSFLNPSKTITSEKYAQRINEMHQKLQHLQLALVNR 431 67999*************999.*****************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (896 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 86 (0.00527413); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.65 # Mc/sec: 3943.54 // Query: T167172_1 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 128 (0.00784987); expected 326.1 (0.02) Passed bias filter: 74 (0.00453821); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.73 # Mc/sec: 1391.23 // Query: T167172_2 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.64 # Mc/sec: 1586.87 // Query: T167172_3 [L=355] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-30 102.8 4.6 1.5e-29 101.8 4.6 1.5 1 MBDa p55-binding region of Methyl-CpG-binding domain pro 1.1e-17 64.4 0.0 2e-17 63.5 0.0 1.5 1 MBD_C C-terminal domain of methyl-CpG binding protein 2 a Domain annotation for each model (and alignments): >> MBDa p55-binding region of Methyl-CpG-binding domain proteins MBD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.8 4.6 1.9e-33 1.5e-29 1 70 [. 114 183 .. 114 184 .. 0.99 Alignments for each domain: == domain 1 score: 101.8 bits; conditional E-value: 1.9e-33 MBDa 1 qkkrqdqlekskrrtdlslalPiRlTssIFkqPVTritshpenkvrtdpkeetlekPkQlfwekRLqglq 70 qkkr+ +++k++rr+++++alP+RlTs+IF++PVTri+shp+n+vr+++ +e+lekP+Ql++++RLq+lq T167172_3 114 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQ 183 79******************************************************************98 PP >> MBD_C C-terminal domain of methyl-CpG binding protein 2 and 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.5 0.0 2.5e-21 2e-17 1 94 [] 188 279 .. 188 279 .. 0.95 Alignments for each domain: == domain 1 score: 63.5 bits; conditional E-value: 2.5e-21 MBD_C 1 egeklstldLpkslkplgpgitdetllqslasalhtssspitGqkkskkaleknpgvtlnvdqplcksvviteeDIrrQeekVkkaRkrLaeaL 94 +ge +s+l L + l+ l+pg+++e+l++++a+ + ++ +p++G a pg++++ + pl+ ++v t +DIrrQ+++VkkaR+rLa+aL T167172_3 188 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPA-VAGGPTPGMGCQLPPPLSGQLV-TPADIRRQARRVKKARERLAKAL 279 68999**************************************9864.4558999*************99.*********************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (355 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 334 (0.0204833); expected 326.1 (0.02) Passed bias filter: 213 (0.0130627); expected 326.1 (0.02) Passed Vit filter: 22 (0.0013492); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.55 # Mc/sec: 1846.54 // Query: T380530_1 [L=1855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-38 130.2 2.7 3.4e-38 129.3 2.7 1.5 1 DUF4560 Domain of unknown function (DUF4560) Domain annotation for each model (and alignments): >> DUF4560 Domain of unknown function (DUF4560) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.3 2.7 2.1e-42 3.4e-38 1 65 [] 78 142 .. 78 142 .. 0.99 Alignments for each domain: == domain 1 score: 129.3 bits; conditional E-value: 2.1e-42 DUF4560 1 aaalsglalrlsrsaaargsYgvfCkGLtrtLliffdLaWrLrinfPYlYivasvilnvrLqvhi 65 aaalsgla+rlsrsaaargsYg+fCkGLtrtLl+ffdLaWrLr+nfPY+Yivasv+lnvrLqv+i T380530_1 78 AAALSGLAVRLSRSAAARGSYGAFCKGLTRTLLTFFDLAWRLRMNFPYFYIVASVMLNVRLQVRI 142 79*************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 209 (0.0128174); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.70 # Mc/sec: 7581.20 // Query: T380530_2 [L=1855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 180 (0.0110389); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.68 # Mc/sec: 7804.18 // Query: T380530_3 [L=1855] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1855 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:00.69 # Mc/sec: 7691.07 // Query: T071278_1 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 130 (0.00797253); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.69 # Mc/sec: 5895.80 // Query: T071278_2 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 104 (0.00637802); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.65 # Mc/sec: 6258.62 // Query: T071278_3 [L=1421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1421 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 186 (0.0114068); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.68 # Mc/sec: 5978.29 // Query: T090241_1 [L=3895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3895 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 912 (0.0559303); expected 326.1 (0.02) Passed bias filter: 229 (0.0140439); expected 326.1 (0.02) Passed Vit filter: 95 (0.00582608); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.43u 0.46s 00:00:02.89 Elapsed: 00:00:00.81 # Mc/sec: 13756.71 // Query: T090241_2 [L=3894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 676 (0.0414571); expected 326.1 (0.02) Passed bias filter: 176 (0.0107936); expected 326.1 (0.02) Passed Vit filter: 37 (0.0022691); expected 16.3 (0.001) Passed Fwd filter: 6 (0.000367963); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.43s 00:00:02.51 Elapsed: 00:00:00.87 # Mc/sec: 12804.68 // Query: T090241_3 [L=3894] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3894 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.36u 0.33s 00:00:01.69 Elapsed: 00:00:00.79 # Mc/sec: 14101.36 // Query: T353454_1 [L=1931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1268 (0.0777628); expected 326.1 (0.02) Passed bias filter: 278 (0.0170489); expected 326.1 (0.02) Passed Vit filter: 62 (0.00380228); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:00.73 # Mc/sec: 7567.48 // Query: T353454_2 [L=1931] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1931 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1458 (0.0894149); expected 326.1 (0.02) Passed bias filter: 298 (0.0182755); expected 326.1 (0.02) Passed Vit filter: 147 (0.00901509); expected 16.3 (0.001) Passed Fwd filter: 37 (0.0022691); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.78u 0.31s 00:00:02.09 Elapsed: 00:00:00.70 # Mc/sec: 7891.80 // Query: T353454_3 [L=1930] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1930 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1271 (0.0779468); expected 326.1 (0.02) Passed bias filter: 233 (0.0142892); expected 326.1 (0.02) Passed Vit filter: 67 (0.00410892); expected 16.3 (0.001) Passed Fwd filter: 19 (0.00116522); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.71 # Mc/sec: 7776.62 // Query: T318764_1 [L=2630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 213 (0.0130627); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.07u 0.30s 00:00:01.37 Elapsed: 00:00:00.68 # Mc/sec: 11064.68 // Query: T318764_2 [L=2630] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2630 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.61 # Mc/sec: 12334.40 // Query: T318764_3 [L=2629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2629 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 282 (0.0172942); expected 326.1 (0.02) Passed bias filter: 108 (0.00662333); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.78 # Mc/sec: 9642.46 // Query: T007015_1 [L=7530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 215 (0.0131853); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.14u 0.42s 00:00:02.56 Elapsed: 00:00:00.82 # Mc/sec: 26270.79 // Query: T007015_2 [L=7530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-12 45.7 0.0 7.2e-12 45.2 0.0 1.1 1 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal 4.8e-11 42.6 0.0 8.2e-11 41.9 0.0 1.3 1 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-termina Domain annotation for each model (and alignments): >> Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.2 0.0 8.8e-16 7.2e-12 170 241 .. 96 166 .. 92 167 .. 0.97 Alignments for each domain: == domain 1 score: 45.2 bits; conditional E-value: 8.8e-16 HHHHHHHHHHHHHHHHCHTTT..-SEEE--S-----SSTSS-HHHHHHHHHHHHHHHHHHCTS--EEEE--C CS Orn_Arg_deC_N 170 eafakavekarkvfeelaelgfklkildvGGGfgveyeedeefeeiaevinaaleelfeegdkevtiiaEpG 241 ++f +a+++ r+++e++++ g+++ +ld+GGGf++ + +fee a+vi+aal + +e + v++iaEpG T007015_2 96 QSFTQAIADCRCMLEMGHRAGHDMSCLDIGGGFPGMEGSGPKFEELARVISAALAQDLPE-ERGVKVIAEPG 166 789***********************************9********************8.9*********9 PP >> Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.9 0.0 1e-14 8.2e-11 60 106 .. 205 251 .. 144 255 .. 0.86 Alignments for each domain: == domain 1 score: 41.9 bits; conditional E-value: 1e-14 SSSSTT-EE.EEECEEE-.--TT-EEEESS-SSSSGGG-B-CCC---E CS Orn_DAP_Arg_deC 60 ptCdsdDvi.akdvelpeelevgdllvfedmGAYtevlasnfngfgdp 106 p+Cd D++ +dv+lpe l+vgd+lvf++mGAY ++++s fngf + T007015_2 205 PMCDAFDRLfLEDVRLPE-LDVGDWLVFPSMGAYMSSMSSSFNGFLPA 251 89*****9867999***7.**************************655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.25u 0.44s 00:00:02.69 Elapsed: 00:00:00.82 # Mc/sec: 26270.79 // Query: T007015_3 [L=7530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7530 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 240 (0.0147185); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.31u 0.46s 00:00:02.77 Elapsed: 00:00:00.89 # Mc/sec: 24204.55 // Query: T038772_1 [L=589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 64 (0.00392494); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.50 # Mc/sec: 3370.06 // Query: T038772_2 [L=589] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-13 48.9 0.5 7.9e-13 48.4 0.5 1.1 1 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain Domain annotation for each model (and alignments): >> ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.4 0.5 4.8e-17 7.9e-13 142 193 .. 162 212 .. 156 215 .. 0.88 Alignments for each domain: == domain 1 score: 48.4 bits; conditional E-value: 4.8e-17 CTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS CS ketoacyl-synt 142 spkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslrsge 193 +++a+g+ + +++a+risy ++l+Gps+++d+ACsSs+va+ a ++++g T038772_2 162 HRNATGS-AMSIAANRISYVFNLTGPSFAIDSACSSSFVALYYAFLAIKQGM 212 3368898.99***************************************996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (589 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 359 (0.0220164); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.55 # Mc/sec: 3063.69 // Query: T038772_3 [L=588] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-16 58.3 0.0 1.1e-15 57.8 0.0 1.1 1 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain ------ inclusion threshold ------ 0.92 9.1 6.5 0.1 12.1 2.1 1.8 2 DUF3704 Protein of unknown function (DUF3704) Domain annotation for each model (and alignments): >> ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.8 0.0 1.3e-19 1.1e-15 68 132 .. 91 155 .. 84 167 .. 0.88 Alignments for each domain: == domain 1 score: 57.8 bits; conditional E-value: 1.3e-19 TEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHH CS ketoacyl-synt 68 ddfdpeffgispreaeamdpqqrllleaawealedagltpeeldgsrvgvfiGvgagdyaalaal 132 ++fd+ +fgis+ eae +dpqq+llle+++ ale+ag++++e+ gsr+gvfiG++++dy+ ++ T038772_3 91 NEFDNNLFGISDLEAECLDPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRR 155 79********************************************************9654443 PP >> DUF3704 Protein of unknown function (DUF3704) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.2 1.3 1e+04 9 13 .. 240 244 .. 240 244 .. 0.80 2 ? 12.1 2.1 1.3e-05 0.1 8 20 .. 389 401 .. 388 408 .. 0.89 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 1.3 DUF3704 9 GYMPk 13 GYM + T038772_3 240 GYMCR 244 9**65 PP == domain 2 score: 12.1 bits; conditional E-value: 1.3e-05 DUF3704 8 FGYMPksgIAGSS 20 FGY P+ gIAGS T038772_3 389 FGYIPRKGIAGSN 401 9**********95 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (588 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 415 (0.0254508); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.55 # Mc/sec: 3058.49 // Query: T210845_1 [L=3102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 137 (0.00840182); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.69 # Mc/sec: 12861.30 // Query: T210845_2 [L=3102] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3102 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 255 (0.0156384); expected 326.1 (0.02) Passed bias filter: 103 (0.00631669); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.29s 00:00:01.44 Elapsed: 00:00:00.56 # Mc/sec: 15568.94 // Query: T210845_3 [L=3101] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3101 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.26u 0.27s 00:00:01.53 Elapsed: 00:00:00.86 # Mc/sec: 10315.62 // Query: T227449_1 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 208 (0.012756); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.33u 0.41s 00:00:01.74 Elapsed: 00:00:00.75 # Mc/sec: 12213.84 // Query: T227449_2 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 241 (0.0147798); expected 326.1 (0.02) Passed bias filter: 94 (0.00576475); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.72 # Mc/sec: 12722.75 // Query: T227449_3 [L=3202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3202 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 197 (0.0120814); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.29s 00:00:01.44 Elapsed: 00:00:00.57 # Mc/sec: 15793.75 // Query: T129652_1 [L=1759] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1759 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 226 (0.0138599); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 7400.29 // Query: T129652_2 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 210 (0.0128787); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.75 # Mc/sec: 6705.79 // Query: T129652_3 [L=1758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 303 (0.0185821); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.61 # Mc/sec: 8244.82 // Query: T171723_1 [L=188] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (188 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 100 (0.00613271); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.55 # Mc/sec: 977.88 // Query: T171723_2 [L=187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 126 (0.00772722); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.53 # Mc/sec: 1009.39 // Query: T171723_3 [L=187] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (187 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 166 (0.0101803); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.64 # Mc/sec: 835.90 // Query: T156187_1 [L=1685] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1685 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 109 (0.00668466); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.72 # Mc/sec: 6695.14 // Query: T156187_2 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.66 # Mc/sec: 7299.45 // Query: T156187_3 [L=1684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1684 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 125 (0.00766589); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.63 # Mc/sec: 7647.04 // Query: T295338_1 [L=168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 311 (0.0190727); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.62 # Mc/sec: 775.19 // Query: T295338_2 [L=168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 310 (0.0190114); expected 326.1 (0.02) Passed bias filter: 212 (0.0130013); expected 326.1 (0.02) Passed Vit filter: 29 (0.00177849); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.66 # Mc/sec: 728.21 // Query: T295338_3 [L=168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 404 (0.0247762); expected 326.1 (0.02) Passed bias filter: 220 (0.013492); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.51 # Mc/sec: 942.39 // Query: T194285_1 [L=4461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4461 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 91 (0.00558077); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.32u 0.31s 00:00:01.63 Elapsed: 00:00:00.67 # Mc/sec: 19048.00 // Query: T194285_2 [L=4460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 7.5 6.6 16.2 42 4.2 0.1 5.9 6 RS4NT RS4NT (NUC023) domain Domain annotation for each model (and alignments): >> RS4NT RS4NT (NUC023) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.3 0.18 3e+03 4 15 .. 1722 1733 .. 1721 1735 .. 0.87 2 ? 0.9 0.1 0.028 4.6e+02 8 16 .. 2614 2622 .. 2612 2623 .. 0.91 3 ? 4.2 0.1 0.0026 43 7 16 .. 2681 2690 .. 2680 2691 .. 0.93 4 ? 4.2 0.1 0.0026 42 8 17 .. 2857 2866 .. 2855 2866 .. 0.91 5 ? 2.0 0.0 0.013 2.2e+02 8 16 .. 2923 2931 .. 2921 2932 .. 0.91 6 ? 2.0 0.0 0.013 2.2e+02 8 16 .. 3062 3070 .. 3060 3071 .. 0.91 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 0.18 ---EETTTS-GG CS RS4NT 4 kkHLKrlaAPkh 15 kk+LK+l+A h T194285_2 1722 KKKLKSLSAGEH 1733 9********877 PP == domain 2 score: 0.9 bits; conditional E-value: 0.028 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194285_2 2614 KSLKAPGHW 2622 9******** PP == domain 3 score: 4.2 bits; conditional E-value: 0.0026 EETTTS-GGG CS RS4NT 7 LKrlaAPkhW 16 LK+l+AP hW T194285_2 2681 LKSLSAPEHW 2690 9********* PP == domain 4 score: 4.2 bits; conditional E-value: 0.0026 ETTTS-GGG- CS RS4NT 8 KrlaAPkhWm 17 K+l+APkhW+ T194285_2 2857 KSLSAPKHWQ 2866 9********5 PP == domain 5 score: 2.0 bits; conditional E-value: 0.013 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194285_2 2923 KSLSAPEHW 2931 9******** PP == domain 6 score: 2.0 bits; conditional E-value: 0.013 ETTTS-GGG CS RS4NT 8 KrlaAPkhW 16 K+l+AP hW T194285_2 3062 KSLSAPEHW 3070 9******** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.49u 0.41s 00:00:01.90 Elapsed: 00:00:00.76 # Mc/sec: 16788.56 // Query: T194285_3 [L=4460] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4460 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.71u 0.37s 00:00:02.08 Elapsed: 00:00:00.79 # Mc/sec: 16151.01 // Query: T086685_1 [L=957] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (957 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 304 (0.0186434); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.72 # Mc/sec: 3802.52 // Query: T086685_2 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 422 (0.02588); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.55 # Mc/sec: 4972.64 // Query: T086685_3 [L=956] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (956 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 600 (0.0367963); expected 326.1 (0.02) Passed bias filter: 129 (0.0079112); expected 326.1 (0.02) Passed Vit filter: 35 (0.00214645); expected 16.3 (0.001) Passed Fwd filter: 13 (0.000797253); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.68 # Mc/sec: 4021.99 // Query: T051567_1 [L=5924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.008 15.9 6.1 0.17 11.7 3.5 2.3 2 Pentapeptide_2 Pentapeptide repeats (8 copies) Domain annotation for each model (and alignments): >> Pentapeptide_2 Pentapeptide repeats (8 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 3.5 1e-05 0.17 3 39 .. 115 151 .. 110 152 .. 0.69 2 ! 7.1 0.3 0.00028 4.6 3 35 .. 145 177 .. 143 182 .. 0.76 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1e-05 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39 tG++ +Gs+ tG++ +Gs+ tG +Gs+ tG + tG T051567_1 115 TGTVAMGSVATGSVATGSVATGTVATGSVATGTVATG 151 6677777777777777777777777777777777666 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00028 Pentapeptide_2 3 tGslNsGsgNtGffNlGsgNtGsfNlGsgNtGs 35 tG++ +Gs+ tG++ +Gs+ Gs Gs tGs T051567_1 145 TGTVATGSVATGTVATGSVARGSVARGSMATGS 177 677778888888888888888888888877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 553 (0.0339139); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.05u 0.42s 00:00:02.46 Elapsed: 00:00:00.96 # Mc/sec: 17653.71 // Query: T051567_2 [L=5924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 34 (0.00208512); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.34s 00:00:02.00 Elapsed: 00:00:00.69 # Mc/sec: 24561.68 // Query: T051567_3 [L=5924] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5924 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 47 (0.00288237); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.36s 00:00:02.06 Elapsed: 00:00:00.71 # Mc/sec: 23869.80 // Query: T362461_1 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 374 (0.0229363); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.66 # Mc/sec: 2180.30 // Query: T362461_2 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-06 25.5 0.0 1.2e-05 24.9 0.0 1.1 1 RabGAP-TBC Rab-GTPase-TBC domain Domain annotation for each model (and alignments): >> RabGAP-TBC Rab-GTPase-TBC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 7.5e-10 1.2e-05 85 128 .. 66 108 .. 65 115 .. 0.89 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 7.5e-10 RabGAP-TBC 85 pevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlyt 128 +++gYcqG + ++ +ll ++ +e+eaF ++++Ll++++l+d + T362461_2 66 QDMGYCQGVSQVAVVLL-MFPKEKEAFLALAQLLTSKNLPDTVD 108 689**************.8889999*********9999998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 189 (0.0115908); expected 326.1 (0.02) Passed bias filter: 130 (0.00797253); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.62 # Mc/sec: 2320.96 // Query: T362461_3 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-32 110.7 0.0 1.1e-31 110.2 0.0 1.1 1 Trypsin Trypsin 1.9e-09 37.8 0.4 2.7e-09 37.3 0.4 1.2 1 DUF1986 Domain of unknown function (DUF1986) Domain annotation for each model (and alignments): >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.2 0.0 1.4e-35 1.1e-31 1 131 [. 345 479 .. 345 487 .. 0.94 Alignments for each domain: == domain 1 score: 110.2 bits; conditional E-value: 1.4e-35 EBSSEETTTTSSTTEEEEEETTCEEEEEEEEEETTEEEEEGGGHTT....GGGEEEEESESBTTSETTTCEEEEEEEEEEETTEBTTT.TTTTEEEEEES CS Trypsin 1 ivggeeaqkgsfpwqvslsvksgkhlCgGslisenwvlTAaHCvsn....asdvkvvlgehnlkksegkeqklkvekvivhpnynpst.ldnDiallklk 95 i gg++a++g++pwq+sl + + +hlCg++li+++w+++ HC+ n +++++v lg+ +l ++ + qk++v ++i hp++++ + Dia+l+l T362461_3 345 IYGGRDAAAGQWPWQASLLYWG-SHLCGAVLIDSCWLVSTTHCFLNksqaPKNYQVLLGNIQLYHQTQHTQKMSVHRIITHPDFEKLHpFGSDIAMLQLH 443 789****************999.7************************************8888888889*****************999********** PP SSSTTBSSBHCCBBCSTTHTTSTTTEEEEEESSBSS CS Trypsin 96 epvklgdtvrpiclpaassslpvgttclvsGwgrtk 131 p+++++++ p+clp+ + +lp + +c+++Gwg T362461_3 444 LPMNFTSYIVPVCLPSRDMQLPSNVSCWITGWGMLT 479 ****************99999************843 PP >> DUF1986 Domain of unknown function (DUF1986) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.4 3.3e-13 2.7e-09 1 109 [. 356 470 .. 356 475 .. 0.81 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 3.3e-13 DUF1986 1 wPwladvyleGdlicsGvlidkswvlvsesclsdvdlehsyvsvvlGgaktkksv.kgpyeqivrvdafkdvpk.....sevvllhleskvsfsrhvlPt 94 wPw a + G+ c vlid w++ + c + + + v+lG + +++ +++ ++r+ ++ d k s++ +l l+ +++f+ ++ P+ T362461_3 356 WPWQASLLYWGSHLCGAVLIDSCWLVSTTHCFLNKSQAPKNYQVLLGNIQLYHQTqHTQKMSVHRIITHPDFEKlhpfgSDIAMLQLHLPMNFTSYIVPV 455 9******************************999999999999****987776653444444555544333322222349******************** PP DUF1986 95 fvpessnenekdakc 109 +p+ ++ ++ c T362461_3 456 CLPSRDMQLPSNVSC 470 ****99999999888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 200 (0.0122654); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46 # Mc/sec: 3128.26 // Query: T281045_1 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.24 10.7 26.2 0.38 10.0 26.2 1.2 1 DUF1510 Protein of unknown function (DUF1510) Domain annotation for each model (and alignments): >> DUF1510 Protein of unknown function (DUF1510) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 26.2 2.3e-05 0.38 47 134 .. 1099 1184 .. 1091 1187 .. 0.51 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 2.3e-05 DUF1510 47 sddeeeeseeedkdekkeeseeneeeekeeesdeeeedkseeeeeedkeedeekekeedaeenaevteessdenvekavtnpdWkpvg 134 +++ ++e ++e k+e + e e++ ++eke ++++++e k+e +e +++ +ee+ ++++ ++ ++e ++e+ +++v + W pv+ T281045_1 1099 KKERKKERKKERKKEREREREKERKKEKERKKERKKERKKERKEGRKEGRKEER--KRKERRKERRKKERKEEKCKQTVCSVHWTPVP 1184 222223333333333333333333333333333333333333333333333333..334455567788899999*************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1729 (0.106035); expected 326.1 (0.02) Passed bias filter: 569 (0.0348951); expected 326.1 (0.02) Passed Vit filter: 287 (0.0176009); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.81u 0.44s 00:00:02.25 Elapsed: 00:00:00.88 # Mc/sec: 4668.35 // Query: T281045_2 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.072 11.7 39.0 0.1 11.2 39.0 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 4.2 5.4 20.7 5.9 4.9 20.7 1.1 1 CDC45 CDC45-like protein Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 39.0 1.3e-05 0.1 111 187 .. 1094 1169 .. 1064 1194 .. 0.55 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 1.3e-05 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS MIP-T3 111 srkekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkds 187 ++++k+k+e+kk+++ke+++e+er +k+e+k k+++++ke++ke+kk+ ++ r++ ++rere++++r++ +kk++++ T281045_2 1094 KSEKKRKKERKKERKKERKRERERERKKERK-KKKERKKERKKERKKGRKEGRKEGRKRERERKEGRKEGRKKERKK 1169 3334444444444444444444443333332.233344444444444444444444444444444444444433211 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 20.7 0.00072 5.9 138 210 .. 1098 1170 .. 1048 1185 .. 0.44 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.00072 CDC45 138 eeeedddeeeeeeeeedeeeeeedeeeskkkrksksdeeeee....edeeersrkrrrsepsakklrrr.lkkerrky 210 + ++++++e+++e+++++e+e ++e+++kk+rk+++++e+++ ++e r+r+r+r+e r++ +kker+k+ T281045_2 1098 KRKKERKKERKKERKRERERERKKERKKKKERKKERKKERKKgrkeGRKEGRKRERERKE-----GRKEgRKKERKKN 1170 111111111111111111122222222222222222223233221122233333333333.....2222233333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1572 (0.0964062); expected 326.1 (0.02) Passed bias filter: 556 (0.0340979); expected 326.1 (0.02) Passed Vit filter: 250 (0.0153318); expected 16.3 (0.001) Passed Fwd filter: 42 (0.00257574); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.41u 0.43s 00:00:01.84 Elapsed: 00:00:00.63 # Mc/sec: 6520.88 // Query: T281045_3 [L=1436] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.52 8.8 37.5 0.74 8.3 37.5 1.1 1 MIP-T3 Microtubule-binding protein MIP-T3 3.6 7.5 5.6 5.5 6.9 5.6 1.2 1 DDHD DDHD domain 8.2 5.9 13.0 13 5.3 13.0 1.1 1 AAA_11 AAA domain Domain annotation for each model (and alignments): >> MIP-T3 Microtubule-binding protein MIP-T3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 37.5 0.00014 0.74 113 218 .. 1097 1168 .. 1081 1188 .. 0.38 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00014 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS MIP-T3 113 kekkkeekkkkeekekesekerkqkeelkekrrpkekekekekkkkkekdrekekererekaserekkekkkkdsknkkkdkekekkkekssksesgk 210 k+++k+e+ +ke +ke+ r++e+e++ke+k+kke+++e++ker++ ++++r++ ++ k++ +++gk T281045_3 1097 KKERKKER---------------KKERKKERERERERERKKERKRKKERKKERKKERKEGRKEGRKEGRE-------------------KEKGKKEGK 1160 11111111...............22222222222222222222222222222222222222222222222...................222222222 PP XXXXXXXX CS MIP-T3 211 eeerskde 218 +eer+k + T281045_3 1161 KEERKKGR 1168 22222222 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 5.6 0.001 5.5 125 186 .. 1094 1159 .. 1047 1200 .. 0.54 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.001 DDHD 125 klgeeesaklaesqksherssesskesqeskaaesssasssaksssaee........kveledkelee...ea 186 +++++e++k+ +++ ++er++e++ e++++++++++ +++++k+ ++ + + e+ e T281045_3 1094 RVKKKERKKERKKERKKERERERERERKKERKRKKERKKERKKERKEGRkegrkegrE-------KEKgkkEG 1159 2333333333333333333333333333333332222222222222211223322221.......11121111 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 13.0 0.0024 13 109 192 .. 1091 1169 .. 1072 1188 .. 0.52 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.0024 AAA_11 109 leekvekrlekekekaqlakeirkeleklakelrafeeeeekekllkskekskskleqerrklkkerkelskeleqaeesleee 192 ++++v+k+ +k+++k + ke ++e+e+++k+ r++++e ++k+++k++++ ++e rk +e+++ +ke +++e++ ++ T281045_3 1091 WATRVKKKERKKERKKERKKERERERERERKKERKRKKE-----RKKERKKERKEGRKEGRKEGREKEKGKKEGKKEERKKGRK 1169 555666666555544444444444444444444444444.....3344444444444444444444444444444444443333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1436 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1574 (0.0965289); expected 326.1 (0.02) Passed bias filter: 635 (0.0389427); expected 326.1 (0.02) Passed Vit filter: 285 (0.0174782); expected 16.3 (0.001) Passed Fwd filter: 40 (0.00245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:00.63 # Mc/sec: 6520.88 // Query: T381568_1 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.52 # Mc/sec: 8527.47 // Query: T381568_2 [L=1550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1550 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 8694.68 // Query: T381568_3 [L=1549] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1549 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.49 # Mc/sec: 9043.73 // Query: T004122_1 [L=1320] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1320 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 325 (0.0199313); expected 326.1 (0.02) Passed bias filter: 139 (0.00852447); expected 326.1 (0.02) Passed Vit filter: 18 (0.00110389); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.53 # Mc/sec: 7125.09 // Query: T004122_2 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1645 (0.100883); expected 326.1 (0.02) Passed bias filter: 432 (0.0264933); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 22 (0.0013492); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.57 # Mc/sec: 6505.92 // Query: T004122_3 [L=1319] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1319 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 376 (0.023059); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 19 (0.00116522); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.53 # Mc/sec: 7119.69 // Query: T270476_1 [L=2758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 150 (0.00919907); expected 326.1 (0.02) Passed bias filter: 61 (0.00374095); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.56 # Mc/sec: 14089.59 // Query: T270476_2 [L=2758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0012 19.0 0.0 0.0022 18.1 0.0 1.4 1 RVP Retroviral aspartyl protease 0.0035 16.8 0.0 0.0058 16.0 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 0.0049 16.3 0.0 0.0081 15.6 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras ------ inclusion threshold ------ 0.081 12.9 5.4 0.23 11.5 5.4 1.9 1 zf-CCHC Zinc knuckle 1 9.1 11.5 0.45 10.2 4.3 2.8 2 zf-CCHC_2 Zinc knuckle Domain annotation for each model (and alignments): >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 6.6e-07 0.0022 8 89 .. 1078 1154 .. 1072 1154 .. 0.84 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 6.6e-07 EEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE- CS RVP 8 kvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggatetkqskaievllieekfrgevsplilpelpvnllG 89 + ++gk++ +l+ t A+++ ++ + P + a+ ++ Gi + ++ ++ + ++++ ++ + + s+l++p++pv+llG T270476_2 1078 ILTVEGKPVPFLINTEATHSTLPSFQGPVS----LASITVVGIDSQASKPLKTPR-LWCQLRQYSFKHSFLVIPTCPVPLLG 1154 4678899***********************....***********9988888774.444445555556************99 PP >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 1.8e-06 0.0058 138 181 .. 875 918 .. 866 922 .. 0.94 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.8e-06 Gag_p30 138 espaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdir 181 ++pa f+ l + rr+t dp+ + + +++ fi+qsa+di+ T270476_2 875 KNPAQFMAPLAATLRRFTALDPKRSKGRLILTIHFITQSAPDIK 918 68****************************************97 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 2.5e-06 0.0081 65 96 .. 1305 1336 .. 1267 1336 .. 0.71 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 2.5e-06 HTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE CS RVT_1 65 kkkaklllklDlkkaFdsvpleellrkltafk 96 + ++++ lDlk+aF+++pl+ l+++l+af+ T270476_2 1305 PSSTTHYSVLDLKDAFFTIPLHPLSQPLFAFT 1336 34559*************************96 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 5.4 7.1e-05 0.23 6 18 .] 992 1004 .. 987 1004 .. 0.90 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 7.1e-05 SSSSSSTTTTSTS CS zf-CCHC 6 CGepGHiardCpk 18 C++ GH+a++Cp+ T270476_2 992 CQKSGHWAKECPQ 1004 ************7 PP >> zf-CCHC_2 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 4.3 0.00014 0.45 6 21 .] 989 1004 .. 984 1004 .. 0.93 2 ? 2.4 0.7 0.039 1.3e+02 3 11 .. 1605 1613 .. 1605 1614 .. 0.88 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00014 zf-CCHC_2 6 ChiCgkkGHyIqdCPt 21 C +C+k GH+ ++CP+ T270476_2 989 CCMCQKSGHWAKECPQ 1004 889************7 PP == domain 2 score: 2.4 bits; conditional E-value: 0.039 zf-CCHC_2 3 gYvChiCgk 11 +Y+C iC++ T270476_2 1605 TYQCSICYS 1613 7******86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 163 (0.00999632); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.56 # Mc/sec: 14089.59 // Query: T270476_3 [L=2758] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 1.1 7.0 7.1 1.6 6.5 7.1 1.1 1 Herpes_BLLF1 Herpes virus major outer envelope glycoprotein Domain annotation for each model (and alignments): >> Herpes_BLLF1 Herpes virus major outer envelope glycoprotein (BLLF1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 7.1 9.7e-05 1.6 513 586 .. 540 614 .. 528 623 .. 0.84 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 9.7e-05 Herpes_BLLF1 513 vttptpnatsptpavttptpnatsptlgktsptsavttptpnatsptpavttptpnatiptlgkts.ptsavttp 586 + tp p + ptp +ptp +pt +pt +ptp +p+p + tp p+l +s p +v p T270476_3 540 LCTPIPYFSVPTPYFRAPTPYFCAPTPYFRAPTPYFCAPTPYFRAPSPYFHALTPYFCAPSLISASqPLISVPRP 614 57999**************************************************99999997665244444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2758 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 115 (0.00705262); expected 326.1 (0.02) Passed bias filter: 54 (0.00331166); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.56 # Mc/sec: 13842.40 // Query: T266342_1 [L=4613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-11 43.2 2.8 1.1e-05 25.0 0.5 3.3 3 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase 1.2e-08 35.0 0.0 2e-08 34.3 0.0 1.4 1 RVP Retroviral aspartyl protease Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 1.2e-06 0.0096 2 95 .. 1723 1790 .. 1722 1794 .. 0.83 2 ! 25.0 0.5 1.3e-09 1.1e-05 2 83 .. 4021 4110 .. 4020 4150 .. 0.82 3 ? 0.7 0.1 0.034 2.8e+02 134 221 .. 4161 4274 .. 4161 4275 .. 0.56 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.2e-06 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-E CS RVT_1 2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldaveellkalkkkkkaklllklDlkkaFdsvpleellrkltaf 95 +K++ ++R++ d++++n+ ++ l + p+ + s +a++++ lDlk+aF+ +p++ +++ l+af T266342_1 1723 QKPN-RQWRLV----QDLRIINETVVP---------LYPAVPNPYTLLSQ------------IPEEAEWFTVLDLKDAFFCIPVHPDSQFLFAF 1790 7999.99***7....6***********.........66666666666221............35678***********************9998 PP == domain 2 score: 25.0 bits; conditional E-value: 1.3e-09 E-TT.....S-EEE......-THHHHCTB-...-.........-------HHHH.................HCCHTS--EEEEEEBCCGCCCS CS RVT_1 2 pKkg....pgsyRpisllsvdykalnklia...krLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsv 83 K++ +++yRpisl+++d k+lnk++a + +++ek +++q+gf +g + + + +++l++++ + k+ +++++ + aF ++ T266342_1 4021 TKPDkdisKTKYRPISLINIDAKLLNKILAn*iQ---QHIEKSTHYDQVGFIRGMQEWFDIhksiNVILHINRMECKNDMIISINSEEAFGKI 4110 5666668999******************964434...789999***********777777799999999**99*****************887 PP == domain 3 score: 0.7 bits; conditional E-value: 0.034 ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH..HHHHHHHHHH.HHHHTT--BEGGG-EEE............. CS RVT_1 134 qGsvlSPllfnlfmnellrelr..kra.......kgvtllrYaDDililskskee..lqelleavee.wlkesglkinpeKtklvlf..........s 209 qG++l Pllfn++ + + r +r k++ ++v+l+ a Di++ ++ l++ ++ + + k +++k+n +K+ ++l+ + T266342_1 4161 QGCPLLPLLFNIVPDAVARGVR*eKEIkgfqtqdEEVKLSSLAHDIILCLEK--T*rLHQKTIKTDK*FSKVAEYKMNIQKSVAFLYangkqsekeiK 4256 8999999999999888888875534445666666666666666666666544..33322222233334444555555566666666666665555441 PP ........ESSEEETTEE CS RVT_1 210 g......kseevkyLGvt 221 + +++ kyLG++ T266342_1 4257 RvipftiATNKTKYLGIN 4274 133344566666666665 PP >> RVP Retroviral aspartyl protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.3 0.0 2.5e-12 2e-08 4 100 .. 1539 1630 .. 1536 1631 .. 0.92 Alignments for each domain: == domain 1 score: 34.3 bits; conditional E-value: 2.5e-12 SSEEEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT-EE CS RVP 4 rPllkvkiggkyieallDtGAdatviseedvPenwpvkkaesllqGiggat.etkqskaievllieekfrgevsplilpelpvnllGrdlLqklgvrL 100 +P++++ i+g+ ++ llDtG +v+ + P++ +++++++ ++g+ +++s+ + ++ + f + +li+pe+p +llGrd+L k g+ + T266342_1 1539 EPRVRLTIEGQEVNCLLDTGVAFSVLL--SCPGQ--LSSRSVTIRAVLGQPvTRYFSQPLTCDWRTLLFPH--AFLIMPESPTPLLGRDILAKAGAII 1630 7************************97..57888..77************988899999999999999999..*******************999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 59 (0.0036183); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.57 # Mc/sec: 22753.46 // Query: T266342_2 [L=4613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-63 215.3 6.5 2.1e-63 214.8 6.5 1.2 1 TLV_coat ENV polyprotein (coat polyprotein) 1.4e-25 89.8 3.0 2.2e-25 89.1 3.0 1.2 1 Transposase_22 L1 transposable element Domain annotation for each model (and alignments): >> TLV_coat ENV polyprotein (coat polyprotein) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 214.8 6.5 2.6e-67 2.1e-63 155 560 .. 2164 2558 .. 2146 2559 .. 0.82 Alignments for each domain: == domain 1 score: 214.8 bits; conditional E-value: 2.6e-67 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXX CS TLV_coat 155 vtqegscnkLilaftkkGkkaktllwglrlyvs...GydPlltfsirlkvkkleevlkdqkppsqphplalplaretspekegtddrlldllqgaylt 249 ++++ ++ k+i ++ G a + w + s G++ +++++++ +++ + ++ k p +p+p + + + + e +t+ l++ll+++ T266342_2 2164 ANTHYWTGKVINPSC-PGGLAAAVYWTYFTHTSmsdGGGVQDQVTEKHVKEVIPQLT---KVPGTPSPYKGQDLS-KLHETLHTHTCLVSLLNTTLTG 2256 555667788888888.55555699999886654338999999999765554444444...455555555555555.33368899999********999 PP XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 250 LnatnpsltedCwlClesg..ppyyeaiavngsvsnktsapacslspqlkltls.evtgqgllig...kvPkthqalcnktektskgseylvapngtv 341 L + + +Cw+Cl + p + ++ + + ++ + +++++l+ +++ +l t + +++ +v+ t + + + ++ ++ p + T266342_2 2257 LHEVLAQNPTNCWMCLPLHfrPCISIPVPEQWNNFSTEINTTSILVGPFASNLEiTHTSHLTCVKfsnTVDTTNSQCIR---WVTPPTQIVCLPSEIF 2351 *999999999*****9988646665555655555555555556677777664431334444455556677777644444...567788899******* PP XXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXHHHHHHHHHHHHHHHH CS TLV_coat 342 facntgltpclstallnlttdlCvlaellPdislisgeyiyaidepatRvkRepvaltlallLgGLgiaagvgtGttgl.vstqqfkkLqaalekDvq 438 f+c+t +cl+ ++++C l+ +P+++++ + +y++ p+ kR + + + G g+ +g+gtG+ g+ stq + kL+++l+ D++ T266342_2 2352 FVCGTSAYHCLN----GSSESMCFLSFFVPPLTIYTEHDLYSHVVPKLCNKR----VLILPFVIGAGVLGGLGTGIGGIkTSTQFYYKLSQELNGDME 2441 ********9976....57999***************999*************....77777888********************************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS--------HHHHHHHHHHHHHHHHHHHHHHH-XXXX.XXXXXXXXXXXXXX.... CS TLV_coat 439 aleesIskleksltslaevvlQNRRGLDlLfleeGGlCaALkEeCCFyadksgivrdsiakLqerleqrqrllednqlwfegllglspwlttllstil 536 +++s++ l+++l sla vvlQNRR LDlL++e+GG+C+ L EeCC+y+++sgiv ++++++q+r+++r +l++ w + l pw++++l T266342_2 2442 WVTDSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGICLFLVEECCYYVNQSGIVTEKVKEIQDRIQHRAEELQNTRPW-DLLSQWMPWILPFL---- 2534 **************************************************************************99998.**************.... PP XXXXXXXXXXXXXXXXXXXXXXXX CS TLV_coat 537 gpLlllLLiLllGPcilnrLvqli 560 gpL++++L+Ll+GPci+n L +++ T266342_2 2535 GPLATIILLLLFGPCIFNLLFKFV 2558 **********************98 PP >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.1 3.0 2.8e-29 2.2e-25 167 353 .. 3153 3342 .. 3146 3350 .. 0.86 Alignments for each domain: == domain 1 score: 89.1 bits; conditional E-value: 2.8e-29 HHHHHHHH.HHHHHHHHHHHHHTTTEEE.EES----TT--HHHHHHHHHHHHHHH-HHHHHHT---.EEEEEEESSSS-TSSSS--EEEEEES CS Transposase_22 167 kerekrkk.ileqslqviqdtvkrPnlr.liGvdesedeqlkklenilnkiieenfPnlkkeanvi.iqeiyrtPnrqdskrassrhiivrtt 256 ++k kk +e +lq + +kr n liG+++ ++ + ++e ++ ii nfPnl k++n i +qe y tP r++ k+++srh+++++ T266342_2 3153 SDETKEKKtNNEAQLQDLEIGLKRAN-I*LIGLKD-KVGKEIGIESSFKGIITKNFPNLGKNIN-I*VQEGYITPSRFNPKKTTSRHLLIKLP 3242 44555555156788999999999999.33389976.5778889******************887.555************************* PP SHHHHHHHHHHHHHHS-.EEETTEEEEEEE---HHHHHHH.HHHHHHHHH..HHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-H CS Transposase_22 257 kvlnkdkilkavrekGr.vtlkGkPirltadlsaetlkar.rewtdviqi..lkekkfqPrllyPaklsiiidGeikvfidktklrdylstrP 345 k++ k++ilka+rek + vt+ G i l a++s e l++r + +i + k f ++ k+s+ +Geik f dk+klrd++ tr T266342_2 3243 KIMAKERILKATREK-K*VTYNGNSICLVAEFSVEILQSR*KWHVRKWHI*sIEGKPFYCAIVCLMKISFKREGEIKTFPDKQKLRDFINTRS 3334 **************9.9**********************99555555565657899************************************* PP HHHHHHTT CS Transposase_22 346 alkrllke 353 + +++ k T266342_2 3335 SQQEMTKG 3342 *9999876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 75 (0.00459953); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.18u 0.29s 00:00:01.47 Elapsed: 00:00:00.56 # Mc/sec: 23152.65 // Query: T266342_3 [L=4613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-22 80.4 0.0 1.7e-22 79.9 0.0 1.2 1 Gag_p30 Gag P30 core shell protein 6.2e-08 32.3 0.1 8.8e-08 31.8 0.1 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymeras 0.0048 16.8 1.3 0.0048 16.8 1.3 2.1 2 zf-CCHC Zinc knuckle ------ inclusion threshold ------ 0.18 11.4 0.7 0.43 10.2 0.7 1.7 1 zf-CCHC_4 Zinc knuckle Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.9 0.0 4.1e-26 1.7e-22 3 210 .. 1205 1421 .. 1203 1422 .. 0.89 Alignments for each domain: == domain 1 score: 79.9 bits; conditional E-value: 4.1e-26 Gag_p30 3 wpfsasdlynwktnnpsfsedpqkltaliesillthqptwddcqqllqtlltteerqrvlleark......nvpgedgrptqlpnev...deafpltr 91 pfs sdl + k + fs++p +++ + + + t d ll+ lt +er + a+ + +d t+ ++ ++a p T266342_3 1205 VPFSLSDLKQIKIDLGKFSDNPDGYIDVLQGLGQSFDLTGRDIMLLLNHTLTPNERGAAITAAQEfgdlwyLSQVNDRMTTEERERFptgQQAVPSVD 1302 69*******************************************************988888752222212344566666655544333678999** PP Gag_p30 92 pdwdyetaegreslklyrqlllaglrgaarrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleg 189 p+wd e+ +g + +l glr + ++p n + + +++qgk e+p+aflerl+ea+r++t p++ e++ + fi+ sa+dirkklq+ T266342_3 1303 PHWDAESEHGDWCRRHLLTCVLEGLRKTRNKPVNYSMMSTITQGKGENPTAFLERLREAMRKHTSLSPDSIEDQLMLKDKFITHSAADIRKKLQKSAL 1400 **********99888889999**************************************************************************999 PP Gag_p30 190 lqeatlkdlvkeaekvynkre 210 e++l+ l++ a v++ r+ T266342_3 1401 GPEQNLETLLNLATSVFYNRD 1421 999**************9986 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 0.1 2.1e-11 8.8e-08 131 222 .] 1803 1887 .. 1802 1887 .. 0.90 Alignments for each domain: == domain 1 score: 31.8 bits; conditional E-value: 2.1e-11 B--ST-TTHHHHHHHHH.HHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS RVT_1 131 glpqGsvlSPllfnlfm.nellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvtl 222 lpqG+ SP lf ++ ++l++ l + +l+Y+ D+l+++ s+ ++++ +a+ ++l+ +g+k+++ K +l+l ++vkyLG++l T266342_3 1803 ILPQGFRYSPHLFGQALaQDLSQFLYL---DPLVLQYMGDLLLATHSEALCHQATQALLNFLATCGYKVAKPKARLCL-----QQVKYLGLKL 1887 69***********66651667777777...78*********************************************5.....*******975 PP >> zf-CCHC Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 1.3 1.2e-06 0.0048 1 18 [] 1464 1481 .. 1464 1481 .. 0.94 2 ? -3.2 0.1 2.4 9.9e+03 8 13 .. 1553 1558 .. 1553 1558 .. 0.86 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 1.2e-06 SCTSSSSSSSSTTTTSTS CS zf-CCHC 1 rkCynCGepGHiardCpk 18 r+C+ CG GH+++dCp+ T266342_3 1464 RACFQCGLQGHFKKDCPS 1481 58***************6 PP == domain 2 score: -3.2 bits; conditional E-value: 2.4 SSSSTT CS zf-CCHC 8 epGHia 13 +pGH++ T266342_3 1553 SPGHWS 1558 59***7 PP >> zf-CCHC_4 Zinc knuckle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.7 0.00011 0.43 32 48 .. 1464 1480 .. 1463 1481 .. 0.93 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00011 zf-CCHC_4 32 rfCfiCgllGHsdkeCp 48 r Cf Cgl GH +k+Cp T266342_3 1464 RACFQCGLQGHFKKDCP 1480 78**************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4613 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 229 (0.0140439); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 1.17u 0.35s 00:00:01.52 Elapsed: 00:00:00.60 # Mc/sec: 21995.01 // Query: T212553_1 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 182 (0.0111615); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.51 # Mc/sec: 6854.77 // Query: T212553_2 [L=1222] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1222 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.51 # Mc/sec: 6854.77 // Query: T212553_3 [L=1221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1221 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 420 (0.0257574); expected 326.1 (0.02) Passed bias filter: 217 (0.013308); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.51 # Mc/sec: 6849.16 // Query: T035018_1 [L=489] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0076 16.8 0.1 13 6.4 0.0 3.8 5 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.011 1.9e+02 15 34 .. 212 231 .. 212 237 .. 0.86 2 ? 0.6 0.0 0.053 8.7e+02 14 34 .. 228 248 .. 225 254 .. 0.84 3 ? 1.7 0.0 0.024 3.9e+02 13 34 .. 261 282 .. 255 288 .. 0.84 4 ? -0.3 0.0 0.1 1.7e+03 13 32 .. 278 297 .. 270 301 .. 0.85 5 ! 6.4 0.0 0.00081 13 11 35 .. 334 358 .. 332 359 .. 0.87 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.011 TPR_16 15 dAaaaleaalkrdpssPdaa 34 +Aa++l+++ +++ssP+ + T035018_1 212 AAAPVLRRLQSSGGSSPQGV 231 69***************976 PP == domain 2 score: 0.6 bits; conditional E-value: 0.053 TPR_16 14 ddAaaaleaalkrdpssPdaa 34 ++ +++l+++ +++ssP+ a T035018_1 228 PQGVPVLRRLQSSGGSSPQGA 248 67889*************987 PP == domain 3 score: 1.7 bits; conditional E-value: 0.024 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++ a++l+++ +++ssP+ + T035018_1 261 SPQGAPVLRRLQSSGGSSPQGV 282 67899**************976 PP == domain 4 score: -0.3 bits; conditional E-value: 0.1 TPR_16 13 yddAaaaleaalkrdpssPd 32 ++ +++l+++ +++ssP+ T035018_1 278 SPQGVPVLRRLQSSGGSSPQ 297 6788999***********98 PP == domain 5 score: 6.4 bits; conditional E-value: 0.00081 TPR_16 11 gdyddAaaaleaalkrdpssPdaad 35 g ++ a++l+++l +++ssP+aa T035018_1 334 GSSPQGAPVLRRLLSSGGSSPQAAP 358 556899****************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (489 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 144 (0.00883111); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 2690.28 // Query: T035018_2 [L=488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 15.5 0.4 24 5.6 0.0 3.6 5 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.0015 24 11 39 .. 219 247 .. 212 248 .. 0.87 2 ? 4.7 0.0 0.0029 47 12 34 .. 254 276 .. 251 285 .. 0.88 3 ? 0.8 0.0 0.047 7.7e+02 13 34 .. 272 293 .. 263 299 .. 0.81 4 ? -0.1 0.0 0.087 1.4e+03 15 32 .. 297 314 .. 295 318 .. 0.90 5 ? -2.4 0.0 0.46 7.5e+03 12 23 .. 323 334 .. 320 342 .. 0.76 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0015 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAlll 39 g ++Aa++l+ + +++ssP+aa l + T035018_2 219 GSSPQAAPVLRGFQSSGGSSPQAAPVLRG 247 55789*****************9977766 PP == domain 2 score: 4.7 bits; conditional E-value: 0.0029 TPR_16 12 dyddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ a T035018_2 254 SSPQAAPVLRELQSSGGSSPQGA 276 5689****************987 PP == domain 3 score: 0.8 bits; conditional E-value: 0.047 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++ a++l+ + +++ssP+aa T035018_2 272 SPQGAPVLRGFQSSGGSSPQAA 293 6788999999999999999987 PP == domain 4 score: -0.1 bits; conditional E-value: 0.087 TPR_16 15 dAaaaleaalkrdpssPd 32 +Aa++l+ + +++ssP+ T035018_2 297 RAAPVLRGLQSSGGSSPQ 314 79***************8 PP == domain 5 score: -2.4 bits; conditional E-value: 0.46 TPR_16 12 dyddAaaaleaa 23 ++Aa++l+aa T035018_2 323 SSPQAAPVLRAA 334 567788888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 172 (0.0105483); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48 # Mc/sec: 2908.51 // Query: T035018_3 [L=488] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0087 16.6 3.0 4.2 8.0 0.1 3.8 4 TPR_16 Tetratricopeptide repeat Domain annotation for each model (and alignments): >> TPR_16 Tetratricopeptide repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.1 0.00026 4.2 11 37 .. 213 239 .. 211 242 .. 0.85 2 ! 5.5 0.0 0.0016 25 13 34 .. 232 253 .. 229 259 .. 0.85 3 ! 5.6 0.5 0.0015 24 14 40 .. 267 293 .. 257 325 .. 0.73 4 ? -1.9 0.0 0.33 5.4e+03 11 28 .. 339 356 .. 331 360 .. 0.69 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00026 TPR_16 11 gdyddAaaaleaalkrdpssPdaadAl 37 g ++Aa++l+++ +++ssP+aa l T035018_3 213 GSSPQAAPVLRRLQSSGGSSPQAAPVL 239 5678******************98665 PP == domain 2 score: 5.5 bits; conditional E-value: 0.0016 TPR_16 13 yddAaaaleaalkrdpssPdaa 34 ++Aa++l+++ +++ssP+ + T035018_3 232 SPQAAPVLRRLQSSGGSSPQGV 253 689****************976 PP == domain 3 score: 5.6 bits; conditional E-value: 0.0015 TPR_16 14 ddAaaaleaalkrdpssPdaadAllll 40 ++Aa++l+ + +++ssP+aa l l T035018_3 267 PQAAPVLRGLQSSGGSSPQAAPVLRRL 293 79*****************99888776 PP == domain 4 score: -1.9 bits; conditional E-value: 0.33 TPR_16 11 gdyddAaaaleaalkrdp 28 g ++Aa++l+ + +++ T035018_3 339 GSSPQAAPVLRGFQSSGG 356 456788888887777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (488 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 223 (0.0136759); expected 326.1 (0.02) Passed bias filter: 145 (0.00889243); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.48 # Mc/sec: 2908.51 // Query: T103724_1 [L=3392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 405 (0.0248375); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.57 # Mc/sec: 16730.92 // Query: T103724_2 [L=3392] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-142 474.2 20.5 2.9e-142 473.8 20.5 1.2 1 Transposase_22 L1 transposable element ------ inclusion threshold ------ 0.03 14.4 0.0 0.056 13.6 0.0 1.4 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 0.06 13.0 10.5 0.11 12.1 10.5 1.3 1 IncA IncA protein 0.061 13.7 2.8 0.11 12.9 2.8 1.4 1 Spectrin Spectrin repeat 0.34 11.3 5.0 0.69 10.4 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.42 9.8 12.3 0.74 9.0 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 1.2 9.2 11.4 0.014 15.4 2.1 2.4 2 Med2 Mediator complex subunit 2 3 8.0 7.5 5.3 7.2 6.7 1.8 1 KLRAQ Predicted coiled-coil domain-containing prote Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 473.8 20.5 1.4e-145 2.9e-142 1 368 [] 2947 3282 .. 2947 3282 .. 0.97 Alignments for each domain: == domain 1 score: 473.8 bits; conditional E-value: 1.4e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103724_2 2947 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 3032 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103724_2 3033 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 3089 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103724_2 3090 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 3182 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103724_2 3183 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 3275 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103724_2 3276 QLLQNHA 3282 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 2.8e-05 0.056 1 72 [. 3317 3386 .. 3317 3391 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 2.8e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103724_2 3317 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 3386 699****....7778899*******************9988877766666776667788888999999999976 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 10.5 5.4e-05 0.11 76 175 .. 2971 3094 .. 2937 3101 .. 0.83 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103724_2 2971 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 3064 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103724_2 3065 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 3094 999988888888888888888888665554 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 2.8 5.3e-05 0.11 3 94 .. 3012 3101 .. 3010 3103 .. 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.3e-05 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103724_2 3012 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 3101 568999**************99..677778889999999************************************************99875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.0 0.00034 0.69 3 95 .. 2998 3099 .. 2997 3101 .. 0.70 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00034 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103724_2 2998 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 3092 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103724_2 3093 QEIWDYV 3099 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 12.3 0.00036 0.74 30 124 .. 3000 3094 .. 2996 3101 .. 0.69 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00036 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103724_2 3000 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 3094 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 2.1 2.7 5.5e+03 77 96 .. 1022 1036 .. 1008 1039 .. 0.43 2 ? 15.4 2.1 7e-06 0.014 44 96 .. 3005 3057 .. 2998 3063 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 2.7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103724_2 1022 SKKKKRKKERKKR-----KK 1036 2333332222222.....22 PP == domain 2 score: 15.4 bits; conditional E-value: 7e-06 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103724_2 3005 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 3057 5556799*********************************9999987777665 PP >> KLRAQ Predicted coiled-coil domain-containing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 6.7 0.0026 5.3 28 89 .. 3030 3089 .. 3010 3097 .. 0.71 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0026 KLRAQ 28 eaelkeelkekeqslrkseqEvdsLtFrNqqLekrvellqeeleeeeKkvskskkksesqkk 89 ++ lke l k ++ r + sL r +qLe rv+++ +e++e +++ +k ++k ++++ T103724_2 3030 KKCLKELLELK-AKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKRE-GKFREKRIKRNE 3089 44566655555.45578888899*********************98755.665533333332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3392 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 918 (0.0562983); expected 326.1 (0.02) Passed bias filter: 363 (0.0222617); expected 326.1 (0.02) Passed Vit filter: 73 (0.00447688); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.62 # Mc/sec: 15651.51 // Query: T103724_3 [L=3391] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3391 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 367 (0.0225071); expected 326.1 (0.02) Passed bias filter: 111 (0.00680731); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.29s 00:00:01.33 Elapsed: 00:00:00.56 # Mc/sec: 17019.43 // Query: T325361_1 [L=1055] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1055 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 179 (0.0109776); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.50 # Mc/sec: 6036.35 // Query: T325361_2 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 179 (0.0109776); expected 326.1 (0.02) Passed bias filter: 141 (0.00864712); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.51 # Mc/sec: 5912.38 // Query: T325361_3 [L=1054] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-15 56.9 0.0 2.9e-15 56.3 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.3 0.0 1.8e-19 2.9e-15 59 186 .. 307 411 .. 283 431 .. 0.86 Alignments for each domain: == domain 1 score: 56.3 bits; conditional E-value: 1.8e-19 ...HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T... CS RVT_1 59 lkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra 158 + + + ++++ lDlk+aF+ +p +++++ l++++ p++ +++++y++++lpqG+++SP++f ++ + lr+l+ + T325361_3 307 TIFIFLSRDHEWFRVLDLKDAFFCIPANAESQLLFEWTDPET---------------------ATQFQYCWTVLPQGFKNSPTVFGEALAQNLRDLQLE- 384 5556677889******************************43.....................56*********************************6. PP ...TEEECTTEEEEEESSHHHHHHHHHH CS RVT_1 159 kgvtllrYaDDililskskeelqellea 186 + +llrYaDD+li+s+ k+e+q + T325361_3 385 -NGVLLRYADDLLISSSLKQECQDNTVK 411 .89**************99998876555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1054 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 132 (0.00809518); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.51 # Mc/sec: 5912.38 // Query: T076685_1 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 12.9 0.3 1.2e+02 3.4 0.0 4.3 4 ELM2 ELM2 domain 2.5 7.6 3.5 8.3 5.9 0.3 2.7 2 DUF1838 Protein of unknown function (DUF1838) Domain annotation for each model (and alignments): >> ELM2 ELM2 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.015 1.2e+02 7 22 .. 311 326 .. 309 348 .. 0.81 2 ? 0.8 0.0 0.098 8e+02 7 22 .. 605 620 .. 604 643 .. 0.79 3 ? 1.7 0.0 0.05 4.1e+02 7 18 .. 719 730 .. 718 735 .. 0.86 4 ? -0.7 0.0 0.28 2.3e+03 7 16 .. 905 914 .. 904 920 .. 0.87 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.015 ELM2 7 YQAeiPdlmepeerea 22 +QA +P++ +p++ ea T076685_1 311 FQASLPPWAGPRALEA 326 9**********98776 PP == domain 2 score: 0.8 bits; conditional E-value: 0.098 ELM2 7 YQAeiPdlmepeerea 22 +QA +P l +p e ea T076685_1 605 FQASLPTLAGPCEPEA 620 9*******99998776 PP == domain 3 score: 1.7 bits; conditional E-value: 0.05 ELM2 7 YQAeiPdlmepe 18 +QA +P++ +p+ T076685_1 719 FQASLPPWAGPR 730 9*******9997 PP == domain 4 score: -0.7 bits; conditional E-value: 0.28 ELM2 7 YQAeiPdlme 16 +QA +P++ + T076685_1 905 FQASLPPWAG 914 9******975 PP >> DUF1838 Protein of unknown function (DUF1838) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.3 0.001 8.3 147 186 .. 471 511 .. 458 517 .. 0.78 2 ? 1.3 0.2 0.027 2.2e+02 142 183 .. 831 871 .. 828 875 .. 0.78 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.001 DUF1838 147 tedll.npeltsvsvtlsWtRigpwlPwmkmgdregkliys 186 + +l+ +p l+sv++ l Wt +++ Pw +m + + l T076685_1 471 ATQLApRPPLSSVPAALVWTPWAQFAPWAQMWEAQCPLAPA 511 44554378899********************8887776655 PP == domain 2 score: 1.3 bits; conditional E-value: 0.027 DUF1838 142 kltvetedllnpeltsvsvtlsWtRigpwlPwmkmgdregkl 183 + ++++++ +p +sv++ l+Wt ++ Pw + + +g+l T076685_1 831 CFPAKIQET-RPPFSSVPAVLGWTLWTQLTPWARTWEAQGRL 871 555666665.45569*****************9988888877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 173 (0.0106096); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 3 (0.000183981); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.55 # Mc/sec: 7713.84 // Query: T076685_2 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 159 (0.00975101); expected 326.1 (0.02) Passed bias filter: 100 (0.00613271); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.52 # Mc/sec: 8158.87 // Query: T076685_3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 133 (0.00815651); expected 326.1 (0.02) Passed bias filter: 89 (0.00545811); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.52 # Mc/sec: 8158.87 // Query: T254937_1 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 4.5 6.9 14.8 7.3 6.3 5.4 2.5 2 zf-CCHC_5 GAG-polyprotein viral zinc-finger Domain annotation for each model (and alignments): >> zf-CCHC_5 GAG-polyprotein viral zinc-finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 5.4 0.00045 7.3 1 18 [. 756 773 .. 756 775 .. 0.96 2 ? 5.6 1.9 0.00072 12 1 19 [. 779 796 .. 779 799 .. 0.83 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00045 ---B-TTT-SSBS-TTT- CS zf-CCHC_5 1 ppglCpRCkkgkHwardC 18 ppg C +C k H a++C T254937_1 756 PPGACCKCQKSDHQAKEC 773 89**************** PP == domain 2 score: 5.6 bits; conditional E-value: 0.00072 ---B-TTT-SSBS-TTT-- CS zf-CCHC_5 1 ppglCpRCkkgkHwardCh 19 pp Cp C g Hw++dC T254937_1 779 PPKPCPICV-GLHWKSDCS 796 567799995.9*******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 266 (0.016313); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 14 (0.00085858); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.54 # Mc/sec: 8895.06 // Query: T254937_2 [L=1679] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1679 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 248 (0.0152091); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.65 # Mc/sec: 7389.74 // Query: T254937_3 [L=1678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1678 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 206 (0.0126334); expected 326.1 (0.02) Passed bias filter: 92 (0.00564209); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.64 # Mc/sec: 7500.74 // Query: T197751_1 [L=747] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (747 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 293 (0.0179688); expected 326.1 (0.02) Passed bias filter: 183 (0.0112229); expected 326.1 (0.02) Passed Vit filter: 15 (0.000919907); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 3684.55 // Query: T197751_2 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 225 (0.0137986); expected 326.1 (0.02) Passed bias filter: 93 (0.00570342); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.56 # Mc/sec: 3811.03 // Query: T197751_3 [L=746] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (746 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 86 (0.00527413); expected 326.1 (0.02) Passed bias filter: 46 (0.00282105); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.63 # Mc/sec: 3387.59 // Query: T305702_1 [L=1555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 539 (0.0330553); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 40 (0.00245308); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.72 # Mc/sec: 6178.60 // Query: T305702_2 [L=1555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1555 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 673 (0.0412732); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 82 (0.00502882); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.68 # Mc/sec: 6542.05 // Query: T305702_3 [L=1554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.028 13.7 8.1 0.041 13.2 8.1 1.1 1 Plasmodium_Vir Plasmodium vivax Vir protein Domain annotation for each model (and alignments): >> Plasmodium_Vir Plasmodium vivax Vir protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 8.1 2.5e-06 0.041 196 325 .. 643 843 .. 635 846 .. 0.45 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 2.5e-06 Plasmodium_Vir 196 npkkllsklsCknk................................................................................. 209 n+k+ l+klsC+ + T305702_3 643 NTKQYLKKLSCHISkiliiaftnvfwfsfvlsp*pliliiifdi*ltifhlfsndqadfpif*lipvfpspfcflvffwatspspssssfsfsss 737 66677777777766677777777777777777777777777777777777777777777777777777777777777777766555555544322 PP Plasmodium_Vir 210 ...spkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve.eqlvhaltsassgtgndaspesiansssslesvseelss 300 s ++ ++ + ++++ ++++ ++++++s++s+ + ++ + + +++ ++s+ s ++++s +s ++ssss+ s+s+ +ss T305702_3 738 sssS-----SSSSSSSSSSSSSSSSPSSSSSSSSSSSSS--------SSSSSSCSsSSSSSSSSSSFSSSSSSSSSSSSSSSSSSSSSSSSSSSS 819 2211.....111111111111111111111111111111........111111112111112222222222222222222222222222222222 PP Plasmodium_Vir 301 nfirniimaaailgtgiflfsylly 325 + + + a+++ + ++ fsy+ly T305702_3 820 SSSPSPS-SASASAASFSSFSYFLY 843 2222222.44556668888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1554 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1192 (0.0731019); expected 326.1 (0.02) Passed bias filter: 460 (0.0282105); expected 326.1 (0.02) Passed Vit filter: 271 (0.0166196); expected 16.3 (0.001) Passed Fwd filter: 75 (0.00459953); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.60u 0.50s 00:00:03.10 Elapsed: 00:00:01.11 # Mc/sec: 4005.16 // Query: T316325_1 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 373 (0.022875); expected 326.1 (0.02) Passed bias filter: 174 (0.0106709); expected 326.1 (0.02) Passed Vit filter: 8 (0.000490617); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.64 # Mc/sec: 7245.95 // Query: T316325_2 [L=1621] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1621 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 390 (0.0239176); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.68 # Mc/sec: 6819.71 // Query: T316325_3 [L=1620] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1620 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 242 (0.0148412); expected 326.1 (0.02) Passed bias filter: 114 (0.00699129); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.68 # Mc/sec: 6815.51 // Query: T235903_1 [L=1169] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.044 13.3 0.4 15 5.1 0.1 3.1 3 Lambda_Kil Bacteriophage lambda Kil protein Domain annotation for each model (and alignments): >> Lambda_Kil Bacteriophage lambda Kil protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.1 0.00094 15 30 41 .. 842 853 .. 837 854 .. 0.77 2 ? -1.0 0.0 0.078 1.3e+03 34 41 .. 857 864 .. 856 865 .. 0.93 3 ? 4.4 0.0 0.0016 26 26 41 .. 955 970 .. 954 971 .. 0.90 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.00094 Lambda_Kil 30 ayKkavlilklR 41 + +++++++R T235903_1 842 QRHGWISMPWFR 853 5667*******9 PP == domain 2 score: -1.0 bits; conditional E-value: 0.078 Lambda_Kil 34 avlilklR 41 +++ +++R T235903_1 857 WISTPWFR 864 9******9 PP == domain 3 score: 4.4 bits; conditional E-value: 0.0016 Lambda_Kil 26 eAvdayKkavlilklR 41 Av + ++++ +++R T235903_1 955 HAVVQRHRWISTPWFR 970 7999999********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1169 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 95 (0.00582608); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.60 # Mc/sec: 5573.85 // Query: T235903_2 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.15 12.5 0.0 25 5.4 0.0 2.3 2 YtxH YtxH-like protein Domain annotation for each model (and alignments): >> YtxH YtxH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.0028 46 19 45 .. 858 884 .. 858 921 .. 0.84 2 ? 5.4 0.0 0.0015 25 19 41 .. 964 986 .. 964 1005 .. 0.85 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0028 YtxH 19 APksGketRedlkekaddlkekakell 45 +P+ G+etR dl ++ ++ ++ ++ T235903_2 858 SPRHGSETRVDLHAMVQSTRADLHAVV 884 59****************999987665 PP == domain 2 score: 5.4 bits; conditional E-value: 0.0015 YtxH 19 APksGketRedlkekaddlkeka 41 +P+ G+etR+dl ++ ++ ++ T235903_2 964 SPRHGSETRADLHAVVQSTRADP 986 59************999998877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 205 (0.0125721); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.59 # Mc/sec: 5663.47 // Query: T235903_3 [L=1168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1168 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 108 (0.00662333); expected 326.1 (0.02) Passed bias filter: 96 (0.0058874); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.52 # Mc/sec: 6425.86 // Query: T034253_1 [L=2431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 132 (0.00809518); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.73 # Mc/sec: 9526.96 // Query: T034253_2 [L=2431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 123 (0.00754324); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.62 # Mc/sec: 11217.22 // Query: T034253_3 [L=2431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2431 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 121 (0.00742058); expected 326.1 (0.02) Passed bias filter: 68 (0.00417024); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.71 # Mc/sec: 9795.32 // Query: T253972_1 [L=3224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 629 (0.0385748); expected 326.1 (0.02) Passed bias filter: 117 (0.00717527); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.29u 0.38s 00:00:01.67 Elapsed: 00:00:00.72 # Mc/sec: 12810.16 // Query: T253972_2 [L=3224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-70 238.1 6.2 2.3e-70 237.2 6.2 1.4 1 Transposase_22 L1 transposable element 3e-41 141.2 4.4 5.3e-41 140.4 4.4 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 237.2 6.2 2.8e-74 2.3e-70 140 342 .. 476 677 .. 471 699 .. 0.93 Alignments for each domain: == domain 1 score: 237.2 bits; conditional E-value: 2.8e-74 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.TEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEE CS Transposase_22 140 slssrideleervsaaedeieeidrevkerekrkkileqslqviqdtvkr.PnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqe 233 sls+ri+++eer s +e+++ e+ + k +ekr+++ eqslq+++d+v + P lr+ Gv e+e e+ k leni+ ii+enfP l ++++ + qe T253972_2 476 SLSNRIKQVEERNSELENKVFELTQSNKDKEKRIRKCEQSLQEVWDYV-K*PCLRIFGVTEEE-ENSKSLENIFGGIIKENFPGLVRDLDSQTQE 568 9**********************************************9.8889******9965.799**************************** PP EEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSE CS Transposase_22 234 iyrtPnrqdskrassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGei 328 ++rtP ++ kr+s+rh+++r++kv +k++il+avr+k +vt+kGkPi+ltad+saetl+ rr+w+++++ lk++++qP +lyPaklsii +G i T253972_2 569 AQRTPGKFITKRSSPRHVVIRLSKVRKKERILRAVRQKHQVTYKGKPIKLTADFSAETLQVRRDWGPIFNHLKQNNLQPIILYPAKLSIIYEGKI 663 *********************************************************************************************** PP EEESSHHHHHHHHT CS Transposase_22 329 kvfidktklrdyls 342 + f+ + k l T253972_2 664 QSFFRQMKTERILH 677 ***98777665554 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.4 4.4 6.5e-45 5.3e-41 1 209 [. 1265 1494 .. 1265 1520 .. 0.94 Alignments for each domain: == domain 1 score: 140.4 bits; conditional E-value: 6.5e-45 EE-TT......S-EEE......-THHHHCTB--.............-------HHHH.................HCCHTS--EEEEEEBCCGCCCSBB CS RVT_1 1 ipKkg.....pgsyRpisllsvdykalnkliak....rLkdvlekllsenqpgfrpgrstldav....eellkalkkkkkaklllklDlkkaFdsvpl 85 ipK+g +++yR+isl+++d k++nk+ia+ ++k++ ++++q+gf pg + + ++ ++++++++ k+k+++++++D +k F+++++ T253972_2 1265 IPKPGkdttkKEKYRLISLMNIDAKIINKIIAN*iq*HIKKI----IHHDQVGFIPGMQGCFNIhk*iNVIQHINRIKNKNHTIISIDAEKSFNKIQH 1358 899999999999********************9999999999....**********************9999999999999***************** PP -GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEE CS RVT_1 86 eellrkltafkvptklinliksflstrsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDilils 174 ++++++l +++++ +n+ik+++ ++++ +nge+ + ++ +g++qG++lSPllfn++++ l r +r++ ++v+l+++aDD++i++ T253972_2 1359 PFVIKTLSKIGIQGLYLNVIKAIYYKPTAKKVLNGEKLKAFPLRTGTRQGCPLSPLLFNVVLQALVRAIRQEKetngiqisiEEVKLSLFADDMFIYI 1456 ****************************99999***99*********************************99************************* PP SSHHH.HHHHHHHHHHHHHHTT--BEGGG-EEE..... CS RVT_1 175 kskee.lqelleaveewlkesglkinpeKtklvlf..s 209 +++++ +lle ++e+ k s+++in +K+ ++l+ s T253972_2 1457 ENPKDsSRKLLEWIKEFSKVSRYEINVHKSVALLYtnS 1494 **66659************************9987441 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 727 (0.0445848); expected 326.1 (0.02) Passed bias filter: 173 (0.0106096); expected 326.1 (0.02) Passed Vit filter: 17 (0.00104256); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 1.38u 0.31s 00:00:01.69 Elapsed: 00:00:00.83 # Mc/sec: 11112.43 // Query: T253972_3 [L=3224] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3224 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 278 (0.0170489); expected 326.1 (0.02) Passed bias filter: 67 (0.00410892); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.62 # Mc/sec: 14876.32 // Query: T317733_1 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 148 (0.00907641); expected 326.1 (0.02) Passed bias filter: 99 (0.00607138); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.63 # Mc/sec: 6847.83 // Query: T317733_2 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.50 # Mc/sec: 8628.26 // Query: T317733_3 [L=1508] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1508 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 161 (0.00987367); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.76 # Mc/sec: 5676.49 // Query: T155506_1 [L=3148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 246 (0.0150865); expected 326.1 (0.02) Passed bias filter: 124 (0.00760456); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.71 # Mc/sec: 12684.36 // Query: T155506_2 [L=3148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3148 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 251 (0.0153931); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.69 # Mc/sec: 13052.02 // Query: T155506_3 [L=3147] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3147 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 260 (0.0159451); expected 326.1 (0.02) Passed bias filter: 116 (0.00711395); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.99 # Mc/sec: 9093.97 // Query: T199604_1 [L=2105] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2105 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 202 (0.0123881); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.67 # Mc/sec: 8988.13 // Query: T199604_2 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 228 (0.0139826); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.67 # Mc/sec: 8983.86 // Query: T199604_3 [L=2104] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2104 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.70 # Mc/sec: 8598.84 // Query: T265408_1 [L=1929] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1929 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 73 (0.00447688); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.72 # Mc/sec: 7664.64 // Query: T265408_2 [L=1928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 297 (0.0182142); expected 326.1 (0.02) Passed bias filter: 153 (0.00938305); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.65 # Mc/sec: 8485.66 // Query: T265408_3 [L=1928] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1928 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 113 (0.00692996); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.73 # Mc/sec: 7555.73 // Query: T314345_1 [L=5203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.046 13.3 1.2 0.14 11.7 1.2 1.9 1 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 1.2 8.6e-06 0.14 3 16 .. 3657 3670 .. 3657 3671 .. 0.90 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 8.6e-06 DUF1725 3 agKWMELEnIILSE 16 +++WM LE+I+L E T314345_1 3657 IATWMNLEDIMLQE 3670 68**********77 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 301 (0.0184595); expected 326.1 (0.02) Passed bias filter: 120 (0.00735925); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.71u 0.33s 00:00:02.04 Elapsed: 00:00:00.77 # Mc/sec: 19331.04 // Query: T314345_2 [L=5203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 232 (0.0142279); expected 326.1 (0.02) Passed bias filter: 115 (0.00705262); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.73u 0.43s 00:00:02.16 Elapsed: 00:00:00.80 # Mc/sec: 18606.12 // Query: T314345_3 [L=5203] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (5203 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 279 (0.0171103); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.77u 0.45s 00:00:02.22 Elapsed: 00:00:00.82 # Mc/sec: 18152.32 // Query: T364932_1 [L=3341] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3341 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 289 (0.0177235); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.74 # Mc/sec: 12916.26 // Query: T364932_2 [L=3340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 76 (0.00466086); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:00.70 # Mc/sec: 13650.25 // Query: T364932_3 [L=3340] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-84 272.9 112.9 8.4e-09 35.4 0.1 15.1 15 zf-H2C2_2 Zinc-finger double domain 1.1e-56 186.1 120.9 4.7e-07 29.8 0.7 14.6 14 zf-C2H2 Zinc finger, C2H2 type 8.2e-25 85.2 124.4 0.0063 17.1 0.5 15.3 15 zf-C2H2_4 C2H2-type zinc finger 3.2e-18 65.1 100.1 0.0076 16.0 0.7 14.1 14 zf-C2H2_6 C2H2-type zinc finger 1.1e-06 28.6 54.9 0.079 13.2 0.4 11.3 11 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.0059 16.6 80.5 0.026 14.5 3.1 9.5 13 Zn-ribbon_8 Zinc ribbon domain ------ inclusion threshold ------ 0.38 10.4 71.4 0.11 12.2 0.2 12.5 12 zf-C2H2_11 zinc-finger C2H2-type Domain annotation for each model (and alignments): >> zf-H2C2_2 Zinc-finger double domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.7 1.7 3.9e+03 5 15 .. 362 375 .. 360 377 .. 0.72 2 ? 3.1 0.2 0.057 1.3e+02 13 25 .. 496 508 .. 481 509 .. 0.85 3 ! 30.3 0.7 1.5e-10 3.4e-07 1 26 [] 512 537 .. 512 537 .. 0.95 4 ! 35.4 0.1 3.6e-12 8.4e-09 1 25 [. 540 564 .. 540 565 .. 0.96 5 ! 32.8 1.3 2.4e-11 5.6e-08 1 26 [] 568 593 .. 568 593 .. 0.95 6 ! 32.1 1.2 3.9e-11 9.1e-08 1 26 [] 596 621 .. 596 621 .. 0.96 7 ! 30.1 2.1 1.6e-10 3.8e-07 1 25 [. 624 648 .. 624 649 .. 0.95 8 ! 14.0 2.9 2e-05 0.046 2 24 .. 653 675 .. 652 676 .. 0.93 9 ! 35.2 1.2 4.2e-12 9.7e-09 2 26 .] 681 705 .. 680 705 .. 0.95 10 ! 31.3 0.2 6.9e-11 1.6e-07 4 25 .. 711 732 .. 708 733 .. 0.92 11 ! 31.5 2.9 6.2e-11 1.4e-07 1 25 [. 736 760 .. 736 761 .. 0.95 12 ! 10.3 4.1 0.00031 0.73 1 24 [. 764 787 .. 764 787 .. 0.94 13 ! 33.7 0.5 1.2e-11 2.8e-08 2 25 .. 793 816 .. 792 816 .. 0.94 14 ! 24.1 2.4 1.4e-08 3.2e-05 1 24 [. 820 843 .. 820 844 .. 0.97 15 ? -2.9 0.3 4.6 1.1e+04 2 9 .. 849 856 .. 848 860 .. 0.83 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 1.7 zf-H2C2_2 5 HlrkHt...gekpy 15 H+r+H+ + +p+ T364932_3 362 HTRFHHstqKTTPF 375 ****9967444566 PP == domain 2 score: 3.1 bits; conditional E-value: 0.057 zf-H2C2_2 13 kpyeCplCdkaFk 25 +py C +C+k ++ T364932_3 496 NPYLCTECGKGYT 508 599*******987 PP == domain 3 score: 30.3 bits; conditional E-value: 1.5e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +L++H ++H gekpyeC+ C+k+F++ T364932_3 512 SLTQHQKTHIGEKPYECKICGKSFTR 537 599*********************85 PP == domain 4 score: 35.4 bits; conditional E-value: 3.6e-12 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 nL++H r HtgekpyeC +C+kaF+ T364932_3 540 NLVQHQRIHTGEKPYECNECGKAFS 564 89**********************8 PP == domain 5 score: 32.8 bits; conditional E-value: 2.4e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 nL +H r+HtgekpyeC +C k+F++ T364932_3 568 NLIQHQRVHTGEKPYECNECEKTFSH 593 7889********************97 PP == domain 6 score: 32.1 bits; conditional E-value: 3.9e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFkt 26 +Lr H r Htgekpy C +C+kaF++ T364932_3 596 SLRNHERIHTGEKPYPCNECGKAFSH 621 69**********************97 PP == domain 7 score: 30.1 bits; conditional E-value: 1.6e-10 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L++H r Htg+kpyeC +C+k+F+ T364932_3 624 ALTQHHRIHTGKKPYECTECGKTFS 648 699*********************8 PP == domain 8 score: 14.0 bits; conditional E-value: 2e-05 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaF 24 L H H ek y+C+ C+k+F T364932_3 653 LIEHQGIHSEEKSYQCKQCRKVF 675 778******************99 PP == domain 9 score: 35.2 bits; conditional E-value: 4.2e-12 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFkt 26 L rH r+HtgekpyeC +C+kaF++ T364932_3 681 LIRHQRTHTGEKPYECNECGKAFSH 705 88*********************97 PP == domain 10 score: 31.3 bits; conditional E-value: 6.9e-11 zf-H2C2_2 4 rHlrkHtgekpyeCplCdkaFk 25 +H r HtgekpyeC +C+kaF+ T364932_3 711 QHQRIHTGEKPYECNACGKAFN 732 7********************8 PP == domain 11 score: 31.5 bits; conditional E-value: 6.2e-11 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaFk 25 +L+ H r+Htgekpy C++C+k+F+ T364932_3 736 HLTEHQRTHTGEKPYVCKECGKTFS 760 699*********************8 PP == domain 12 score: 10.3 bits; conditional E-value: 0.00031 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 +L+ Hl+ H kpy+C +C k F T364932_3 764 HLTEHLKIHSCVKPYQCNECQKLF 787 699*****************9976 PP == domain 13 score: 33.7 bits; conditional E-value: 1.2e-11 zf-H2C2_2 2 LrrHlrkHtgekpyeCplCdkaFk 25 L rH r+Htgekpy+C +C+k+F+ T364932_3 793 LIRHQRTHTGEKPYQCNECGKSFS 816 88*********************6 PP == domain 14 score: 24.1 bits; conditional E-value: 1.4e-08 zf-H2C2_2 1 nLrrHlrkHtgekpyeCplCdkaF 24 +L++H r Ht e+py+C +C+++F T364932_3 820 ALTKHKRIHTRERPYQCTKCGDVF 843 69*******************998 PP == domain 15 score: -2.9 bits; conditional E-value: 4.6 zf-H2C2_2 2 LrrHlrkH 9 L rH ++H T364932_3 849 LIRHQKTH 856 78*****9 PP >> zf-C2H2 Zinc finger, C2H2 type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.7 1.6 0.00097 2.3 1 23 [] 498 520 .. 498 520 .. 0.96 2 ! 29.8 0.7 2e-10 4.7e-07 1 23 [] 526 548 .. 526 548 .. 0.98 3 ! 24.8 0.2 7.5e-09 1.7e-05 1 23 [] 554 576 .. 554 576 .. 0.98 4 ! 20.1 2.6 2.4e-07 0.00056 1 23 [] 582 604 .. 582 604 .. 0.98 5 ! 20.0 1.6 2.5e-07 0.00059 1 23 [] 610 632 .. 610 632 .. 0.98 6 ! 20.8 0.8 1.5e-07 0.00034 1 23 [] 638 660 .. 638 660 .. 0.96 7 ! 16.4 7.6 3.5e-06 0.0081 1 23 [] 666 688 .. 666 688 .. 0.99 8 ! 18.1 0.5 1e-06 0.0024 1 23 [] 694 716 .. 694 716 .. 0.98 9 ! 23.1 1.0 2.7e-08 6.2e-05 1 23 [] 722 744 .. 722 744 .. 0.99 10 ! 23.7 2.3 1.7e-08 4e-05 1 23 [] 750 772 .. 750 772 .. 0.98 11 ! 15.1 4.9 9.3e-06 0.022 1 23 [] 778 800 .. 778 800 .. 0.99 12 ! 23.1 0.8 2.8e-08 6.4e-05 1 23 [] 806 828 .. 806 828 .. 0.99 13 ! 13.2 5.3 3.6e-05 0.083 1 23 [] 834 856 .. 834 856 .. 0.99 14 ? -3.6 0.4 7 1.6e+04 3 12 .. 1895 1904 .. 1895 1904 .. 0.89 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00097 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y C++Cgk ++ +L++H++tH T364932_3 498 YLCTECGKGYTCLASLTQHQKTH 520 66********************9 PP == domain 2 score: 29.8 bits; conditional E-value: 2e-10 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++CgksF+r+snL++H+r+H T364932_3 526 YECKICGKSFTRNSNLVQHQRIH 548 99********************9 PP == domain 3 score: 24.8 bits; conditional E-value: 7.5e-09 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F+++ nL +H+r+H T364932_3 554 YECNECGKAFSQSTNLIQHQRVH 576 99********************9 PP == domain 4 score: 20.1 bits; conditional E-value: 2.4e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C k+F+++s+L++H r+H T364932_3 582 YECNECEKTFSHRSSLRNHERIH 604 99*******************99 PP == domain 5 score: 20.0 bits; conditional E-value: 2.5e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F++ s L++H r+H T364932_3 610 YPCNECGKAFSHISALTQHHRIH 632 99*******************99 PP == domain 6 score: 20.8 bits; conditional E-value: 1.5e-07 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk+F+r+ +L H+ +H T364932_3 638 YECTECGKTFSRSTHLIEHQGIH 660 99*****************9887 PP == domain 7 score: 16.4 bits; conditional E-value: 3.5e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C+ C k+F+++ +L rH+rtH T364932_3 666 YQCKQCRKVFCHSTSLIRHQRTH 688 9*********************9 PP == domain 8 score: 18.1 bits; conditional E-value: 1e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk F++ + +H+r+H T364932_3 694 YECNECGKAFSHTPAFIQHQRIH 716 99********************9 PP == domain 9 score: 23.1 bits; conditional E-value: 2.7e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C+ Cgk F+r+ +L+ H+rtH T364932_3 722 YECNACGKAFNRSAHLTEHQRTH 744 99********************9 PP == domain 10 score: 23.7 bits; conditional E-value: 1.7e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cgk+F+r+ +L+ H+++H T364932_3 750 YVCKECGKTFSRSTHLTEHLKIH 772 9********************99 PP == domain 11 score: 15.1 bits; conditional E-value: 9.3e-06 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++C k F+ + +L rH+rtH T364932_3 778 YQCNECQKLFCYRTSLIRHQRTH 800 9*********************9 PP == domain 12 score: 23.1 bits; conditional E-value: 2.8e-08 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++CgksF+ +s L++H r+H T364932_3 806 YQCNECGKSFSLSSALTKHKRIH 828 9********************99 PP == domain 13 score: 13.2 bits; conditional E-value: 3.6e-05 zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y+C++Cg +F+++ +L rH++tH T364932_3 834 YQCTKCGDVFCHSTSLIRHQKTH 856 9*********************9 PP == domain 14 score: -3.6 bits; conditional E-value: 7 zf-C2H2 3 CpdCgksFkr 12 C+ C + F++ T364932_3 1895 CSTCEWEFTH 1904 99****9985 PP >> zf-C2H2_4 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.4 1.0 4.1e-05 0.096 1 23 [. 498 520 .. 498 521 .. 0.96 2 ! 17.1 0.5 2.7e-06 0.0063 1 23 [. 526 548 .. 526 549 .. 0.95 3 ! 13.4 0.3 4.2e-05 0.098 1 23 [. 554 576 .. 554 577 .. 0.94 4 ! 13.0 1.8 5.9e-05 0.14 1 23 [. 582 604 .. 582 605 .. 0.94 5 ! 9.7 1.2 0.00066 1.5 1 23 [. 610 632 .. 610 633 .. 0.93 6 ! 13.4 0.7 4.2e-05 0.097 1 23 [. 638 660 .. 638 661 .. 0.92 7 ! 11.6 6.2 0.00016 0.38 1 23 [. 666 688 .. 666 689 .. 0.95 8 ! 8.9 0.5 0.0012 2.8 1 23 [. 694 716 .. 694 717 .. 0.91 9 ! 11.4 0.7 0.00018 0.42 1 23 [. 722 744 .. 722 745 .. 0.96 10 ! 15.7 1.9 7.9e-06 0.018 1 23 [. 750 772 .. 750 773 .. 0.95 11 ! 11.0 3.6 0.00025 0.57 1 23 [. 778 800 .. 778 801 .. 0.96 12 ! 14.3 0.8 2.2e-05 0.051 1 23 [. 806 828 .. 806 829 .. 0.94 13 ! 11.4 4.7 0.00019 0.44 1 23 [. 834 856 .. 834 857 .. 0.95 14 ? -6.3 2.9 7 1.6e+04 2 7 .. 1173 1178 .. 1172 1179 .. 0.81 15 ? -2.9 0.5 7 1.6e+04 2 8 .. 1381 1387 .. 1381 1389 .. 0.79 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 4.1e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 + C+ Cgk +++ +L +H kth T364932_3 498 YLCTECGKGYTCLASLTQHQKTH 520 78********************9 PP == domain 2 score: 17.1 bits; conditional E-value: 2.7e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+iCgksF+++++L +H + h T364932_3 526 YECKICGKSFTRNSNLVQHQRIH 548 89********99999*****998 PP == domain 3 score: 13.4 bits; conditional E-value: 4.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs +++L +H + h T364932_3 554 YECNECGKAFSQSTNLIQHQRVH 576 89********99999****9988 PP == domain 4 score: 13.0 bits; conditional E-value: 5.9e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C C k+Fs +++L++H + h T364932_3 582 YECNECEKTFSHRSSLRNHERIH 604 89********99999*****998 PP == domain 5 score: 9.7 bits; conditional E-value: 0.00066 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs +aL +H + h T364932_3 610 YPCNECGKAFSHISALTQHHRIH 632 89**************9998888 PP == domain 6 score: 13.4 bits; conditional E-value: 4.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cgk+Fs++++L H h T364932_3 638 YECTECGKTFSRSTHLIEHQGIH 660 89*****************8777 PP == domain 7 score: 11.6 bits; conditional E-value: 0.00016 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C++C+k+F+ +++L rH +th T364932_3 666 YQCKQCRKVFCHSTSLIRHQRTH 688 89********99999*******9 PP == domain 8 score: 8.9 bits; conditional E-value: 0.0012 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk Fs a+ +H + h T364932_3 694 YECNECGKAFSHTPAFIQHQRIH 716 89********88888****9998 PP == domain 9 score: 11.4 bits; conditional E-value: 0.00018 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C Cgk F+++ +L H +th T364932_3 722 YECNACGKAFNRSAHLTEHQRTH 744 89********************9 PP == domain 10 score: 15.7 bits; conditional E-value: 7.9e-06 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 + C+ Cgk+Fs++++L Hlk h T364932_3 750 YVCKECGKTFSRSTHLTEHLKIH 772 89*******************99 PP == domain 11 score: 11.0 bits; conditional E-value: 0.00025 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C C+k F+ +++L rH +th T364932_3 778 YQCNECQKLFCYRTSLIRHQRTH 800 89********99999*******9 PP == domain 12 score: 14.3 bits; conditional E-value: 2.2e-05 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C CgksFs ++aL +H + h T364932_3 806 YQCNECGKSFSLSSALTKHKRIH 828 89********99999****9988 PP == domain 13 score: 11.4 bits; conditional E-value: 0.00019 zf-C2H2_4 1 fkCpiCgksFsskkaLlrHlkth 23 ++C+ Cg +F+ +++L rH kth T364932_3 834 YQCTKCGDVFCHSTSLIRHQKTH 856 89********99999*******9 PP == domain 14 score: -6.3 bits; conditional E-value: 7 zf-C2H2_4 2 kCpiCg 7 Cp Cg T364932_3 1173 SCPSCG 1178 6****7 PP == domain 15 score: -2.9 bits; conditional E-value: 7 zf-C2H2_4 2 kCpiCgk 8 +C++C++ T364932_3 1381 ICSHCST 1387 5****75 PP >> zf-C2H2_6 C2H2-type zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 4.7 1.1e+04 15 26 .. 304 315 .. 304 315 .. 0.87 2 ! 8.2 1.1 0.00098 2.3 2 24 .. 498 520 .. 497 523 .. 0.94 3 ! 11.7 0.2 7.4e-05 0.17 2 20 .. 526 544 .. 525 550 .. 0.78 4 ! 12.2 0.2 5.1e-05 0.12 2 24 .. 554 576 .. 553 579 .. 0.90 5 ! 9.4 0.7 0.00041 0.95 2 22 .. 582 602 .. 581 607 .. 0.82 6 ! 10.5 0.8 0.00018 0.41 2 24 .. 610 632 .. 609 635 .. 0.89 7 ! 13.4 0.6 2.2e-05 0.051 2 20 .. 638 656 .. 637 661 .. 0.91 8 ? 3.6 5.5 0.025 59 2 24 .. 666 688 .. 665 691 .. 0.92 9 ! 7.1 0.5 0.0021 4.9 2 12 .. 694 704 .. 693 705 .. 0.91 10 ! 9.7 0.7 0.00033 0.77 2 24 .. 722 744 .. 721 747 .. 0.93 11 ! 14.9 1.5 7.4e-06 0.017 2 24 .. 750 772 .. 749 773 .. 0.93 12 ! 9.0 1.9 0.00052 1.2 2 24 .. 778 800 .. 777 803 .. 0.93 13 ! 16.0 0.7 3.3e-06 0.0076 2 24 .. 806 828 .. 805 831 .. 0.92 14 ? 1.0 4.1 0.17 3.9e+02 2 24 .. 834 856 .. 833 859 .. 0.93 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 4.7 zf-C2H2_6 15 qaLggHkksHrk 26 +++g H k+Hr+ T364932_3 304 YSWGIHFKTHRE 315 68999*****96 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00098 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k + l +L+ H k+H T364932_3 498 YLCTECGKGYTCLASLTQHQKTH 520 89********************9 PP == domain 3 score: 11.7 bits; conditional E-value: 7.4e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggH 20 +eC++C+ksF + +L H T364932_3 526 YECKICGKSFTRNSNLVQH 544 9*********876666555 PP == domain 4 score: 12.2 bits; conditional E-value: 5.1e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+eC+k F+ ++L+ H + H T364932_3 554 YECNECGKAFSQSTNLIQHQRVH 576 9****************998876 PP == domain 5 score: 9.4 bits; conditional E-value: 0.00041 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkk 22 +eC+eC k+F+ +L+ H + T364932_3 582 YECNECEKTFSHRSSLRNHER 602 9*********98888888765 PP == domain 6 score: 10.5 bits; conditional E-value: 0.00018 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k F+ + aL+ H + H T364932_3 610 YPCNECGKAFSHISALTQHHRIH 632 99***************997755 PP == domain 7 score: 13.4 bits; conditional E-value: 2.2e-05 zf-C2H2_6 2 heCdeCsksFpSlqaLggH 20 +eC+eC+k+F++ + L++H T364932_3 638 YECTECGKTFSRSTHLIEH 656 9**********99999888 PP == domain 8 score: 3.6 bits; conditional E-value: 0.025 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C++C k+F ++L+ H ++H T364932_3 666 YQCKQCRKVFCHSTSLIRHQRTH 688 99********************9 PP == domain 9 score: 7.1 bits; conditional E-value: 0.0021 zf-C2H2_6 2 heCdeCsksFp 12 +eC+eC+k F+ T364932_3 694 YECNECGKAFS 704 9********96 PP == domain 10 score: 9.7 bits; conditional E-value: 0.00033 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 +eC+ C+k F++ L++H ++H T364932_3 722 YECNACGKAFNRSAHLTEHQRTH 744 9*********************9 PP == domain 11 score: 14.9 bits; conditional E-value: 7.4e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 + C+eC+k+F++ + L++H+k H T364932_3 750 YVCKECGKTFSRSTHLTEHLKIH 772 99******************977 PP == domain 12 score: 9.0 bits; conditional E-value: 0.00052 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC k F + ++L+ H ++H T364932_3 778 YQCNECQKLFCYRTSLIRHQRTH 800 9********************** PP == domain 13 score: 16.0 bits; conditional E-value: 3.3e-06 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+eC+ksF+ aL++Hk+ H T364932_3 806 YQCNECGKSFSLSSALTKHKRIH 828 9*******************987 PP == domain 14 score: 1.0 bits; conditional E-value: 0.17 zf-C2H2_6 2 heCdeCsksFpSlqaLggHkksH 24 ++C+ C+ +F ++L+ H k+H T364932_3 834 YQCTKCGDVFCHSTSLIRHQKTH 856 99*****************9999 PP >> zf-C2H2_jaz Zinc-finger double-stranded RNA-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.6 1.6 3.6e+03 4 24 .. 500 520 .. 498 521 .. 0.87 2 ! 11.4 0.1 0.00013 0.29 2 22 .. 526 546 .. 525 546 .. 0.94 3 ? 3.5 0.1 0.035 83 2 22 .. 554 574 .. 553 574 .. 0.93 4 ! 13.2 0.4 3.4e-05 0.079 2 22 .. 582 602 .. 581 602 .. 0.94 5 ? 3.3 0.2 0.043 1e+02 2 20 .. 610 628 .. 609 629 .. 0.93 6 ! 7.4 0.1 0.0022 5.2 2 20 .. 638 656 .. 637 657 .. 0.91 7 ? -1.9 4.5 1.8 4.2e+03 4 24 .. 668 688 .. 665 688 .. 0.89 8 ? 2.0 0.2 0.11 2.5e+02 2 22 .. 694 714 .. 693 714 .. 0.89 9 ! 8.7 0.3 0.00083 1.9 2 24 .. 722 744 .. 721 744 .. 0.94 10 ! 11.0 0.1 0.00016 0.37 2 22 .. 750 770 .. 749 770 .. 0.95 11 ? 1.9 0.1 0.12 2.7e+02 4 22 .. 808 826 .. 805 826 .. 0.90 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 1.6 BTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlkSK 24 C C K + +l +H+k++ T364932_3 500 CTECGKGYTCLASLTQHQKTH 520 999999999889999999986 PP == domain 2 score: 11.4 bits; conditional E-value: 0.00013 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C++C K F ++l +H++ T364932_3 526 YECKICGKSFTRNSNLVQHQR 546 89*****************86 PP == domain 3 score: 3.5 bits; conditional E-value: 0.035 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C K F+ + +l +H++ T364932_3 554 YECNECGKAFSQSTNLIQHQR 574 89*****************85 PP == domain 4 score: 13.2 bits; conditional E-value: 3.4e-05 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C+K+F+ ++l+nH++ T364932_3 582 YECNECEKTFSHRSSLRNHER 602 89*****************96 PP == domain 5 score: 3.3 bits; conditional E-value: 0.043 CBBTTTTBBBSSHHHHHCC CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnH 20 + C C K F+ +al +H T364932_3 610 YPCNECGKAFSHISALTQH 628 66****************9 PP == domain 6 score: 7.4 bits; conditional E-value: 0.0022 CBBTTTTBBBSSHHHHHCC CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnH 20 ++C C K+F+ + l +H T364932_3 638 YECTECGKTFSRSTHLIEH 656 89***********999999 PP == domain 7 score: -1.9 bits; conditional E-value: 1.8 BTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlkSK 24 C+ C K F + +l H++++ T364932_3 668 CKQCRKVFCHSTSLIRHQRTH 688 **************9999985 PP == domain 8 score: 2.0 bits; conditional E-value: 0.11 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 ++C C K F+ a+ +H++ T364932_3 694 YECNECGKAFSHTPAFIQHQR 714 89*********9999999975 PP == domain 9 score: 8.7 bits; conditional E-value: 0.00083 CBBTTTTBBBSSHHHHHCCTTSH CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlkSK 24 ++C +C K F+ + l +H++++ T364932_3 722 YECNACGKAFNRSAHLTEHQRTH 744 89******************986 PP == domain 10 score: 11.0 bits; conditional E-value: 0.00016 CBBTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 2 fYCvlCdKyFksenaldnHlk 22 + C+ C K+F+ + l +Hlk T364932_3 750 YVCKECGKTFSRSTHLTEHLK 770 89*****************97 PP == domain 11 score: 1.9 bits; conditional E-value: 0.12 BTTTTBBBSSHHHHHCCTT CS zf-C2H2_jaz 4 CvlCdKyFksenaldnHlk 22 C C K F+ ++al +H++ T364932_3 808 CNECGKSFSLSSALTKHKR 826 99***************86 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.5 3.0 0.0035 8.2 6 38 .. 498 537 .. 497 538 .. 0.85 2 ! 11.8 2.9 7.9e-05 0.18 6 35 .. 526 562 .. 524 566 .. 0.91 3 ! 6.7 6.4 0.003 6.9 6 34 .. 554 589 .. 553 594 .. 0.90 4 ! 6.7 5.2 0.0031 7.3 6 35 .. 582 618 .. 581 622 .. 0.74 5 ? 3.1 0.3 0.041 96 6 19 .. 610 623 .. 609 629 .. 0.83 6 ! 10.0 4.8 0.00029 0.69 6 33 .. 638 672 .. 637 675 .. 0.87 7 ! 13.5 3.0 2.3e-05 0.053 6 38 .. 694 733 .. 693 735 .. 0.92 8 ! 14.5 3.1 1.1e-05 0.026 6 38 .. 722 761 .. 721 763 .. 0.91 9 ? 2.3 7.2 0.071 1.6e+02 6 33 .. 750 784 .. 749 788 .. 0.75 10 ? 1.2 8.1 0.16 3.7e+02 6 34 .. 778 813 .. 774 816 .. 0.88 11 ! 8.0 4.1 0.0012 2.7 6 33 .. 806 840 .. 805 845 .. 0.87 12 ? 2.3 0.7 0.072 1.7e+02 6 15 .. 834 843 .. 833 851 .. 0.89 13 ? -1.0 0.6 0.77 1.8e+03 29 34 .. 1174 1179 .. 1169 1184 .. 0.73 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0035 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y C++Cg+ ++ + q+ + +++ C+ Cg+ +r T364932_3 498 YLCTECGKGYTclasltQHQKTHIGEKPYeCKICGKSFTR 537 89*********8888888888887778888*****98776 PP == domain 2 score: 11.8 bits; conditional E-value: 7.9e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C+ Cg+ f+ + q+i+ +++ C eCg++ T364932_3 526 YECKICGKSFTrnsnlvQHQRIHTGEKPYeCNECGKA 562 9***************99999998889999*****85 PP == domain 3 score: 6.7 bits; conditional E-value: 0.003 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++Cg+ f + q+++ +++ C eC + T364932_3 554 YECNECGKAFSqstnliQHQRVHTGEKPYeCNECEK 589 9**************999999998889999****87 PP == domain 4 score: 6.7 bits; conditional E-value: 0.0031 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgse 35 Y+C++C ++f +i+ +++ C eCg++ T364932_3 582 YECNECEKTFShrsslrNHERIHTGEKPYpCNECGKA 618 9**********6665553334444458888****985 PP == domain 5 score: 3.1 bits; conditional E-value: 0.041 Zn-ribbon_8 6 YrCeaCghefevlq 19 Y C++Cg+ f ++ T364932_3 610 YPCNECGKAFSHIS 623 88********9876 PP == domain 6 score: 10.0 bits; conditional E-value: 0.00029 Zn-ribbon_8 6 YrCeaCghefe......vlqsis.dapltaCPeCg 33 Y+C++Cg++f + q i+ +++ +C++C T364932_3 638 YECTECGKTFSrsthliEHQGIHsEEKSYQCKQCR 672 9****************9*****6665555****5 PP == domain 7 score: 13.5 bits; conditional E-value: 2.3e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y+C++Cg+ f + q+i+ +++ C +Cg++ r T364932_3 694 YECNECGKAFShtpafiQHQRIHTGEKPYeCNACGKAFNR 733 9***************99999998889999*****97766 PP == domain 8 score: 14.5 bits; conditional E-value: 1.1e-05 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgsevrr 38 Y+C+aCg+ f+ + q+ + +++ C+eCg++ r T364932_3 722 YECNACGKAFNrsahltEHQRTHTGEKPYvCKECGKTFSR 761 9**********9999999999998888999*****98776 PP == domain 9 score: 2.3 bits; conditional E-value: 0.071 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCg 33 Y C++Cg++f + +i+ ++ C eC+ T364932_3 750 YVCKECGKTFSrsthltEHLKIHSCVKPYqCNECQ 784 9**********877777333455555777799996 PP == domain 10 score: 1.2 bits; conditional E-value: 0.16 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCgs 34 Y+C++C++ f + q+ + +++ C eCg+ T364932_3 778 YQCNECQKLFCyrtsliRHQRTHTGEKPYqCNECGK 813 99********99999988888888888888****97 PP == domain 11 score: 8.0 bits; conditional E-value: 0.0012 Zn-ribbon_8 6 YrCeaCghefe......vlqsisdaplta.CPeCg 33 Y+C++Cg+ f + +i+ ++ + C +Cg T364932_3 806 YQCNECGKSFSlssaltKHKRIHTRERPYqCTKCG 840 9**********9999998888886667777****9 PP == domain 12 score: 2.3 bits; conditional E-value: 0.072 Zn-ribbon_8 6 YrCeaCghef 15 Y+C++Cg +f T364932_3 834 YQCTKCGDVF 843 9******998 PP == domain 13 score: -1.0 bits; conditional E-value: 0.77 Zn-ribbon_8 29 CPeCgs 34 CP+Cg T364932_3 1174 CPSCGT 1179 888875 PP >> zf-C2H2_11 zinc-finger C2H2-type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.6 0.0046 11 7 23 .. 500 516 .. 496 518 .. 0.93 2 ? 0.3 0.2 0.23 5.4e+02 7 26 .. 528 547 .. 525 548 .. 0.88 3 ? 2.2 0.1 0.061 1.4e+02 6 25 .. 555 574 .. 552 576 .. 0.86 4 ? 3.5 0.2 0.024 57 6 26 .. 583 603 .. 580 604 .. 0.92 5 ? 5.0 0.3 0.008 19 7 26 .. 612 631 .. 609 632 .. 0.94 6 ? 1.8 0.1 0.083 1.9e+02 6 20 .. 639 653 .. 637 659 .. 0.78 7 ? 5.9 3.7 0.0043 10 2 24 .. 663 685 .. 662 687 .. 0.92 8 ? 1.1 0.1 0.14 3.1e+02 6 26 .. 695 715 .. 693 716 .. 0.83 9 ? 3.3 0.7 0.027 63 7 26 .. 752 771 .. 750 772 .. 0.94 10 ? 2.0 2.1 0.069 1.6e+02 5 24 .. 778 797 .. 777 799 .. 0.93 11 ? 12.2 0.2 4.7e-05 0.11 5 26 .. 806 827 .. 803 828 .. 0.94 12 ? 7.4 2.1 0.0014 3.3 5 23 .. 834 852 .. 832 854 .. 0.95 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0046 zf-C2H2_11 7 CleCGlcftSqlsLsRH 23 C+eCG +t sL H T364932_3 500 CTECGKGYTCLASLTQH 516 **************999 PP == domain 2 score: 0.3 bits; conditional E-value: 0.23 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C CG ft L H +I T364932_3 528 CKICGKSFTRNSNLVQHQRI 547 999******99999999887 PP == domain 3 score: 2.2 bits; conditional E-value: 0.061 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlf 25 C eCG f+ + L H + T364932_3 555 ECNECGKAFSQSTNLIQHQR 574 5*********9999988865 PP == domain 4 score: 3.5 bits; conditional E-value: 0.024 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eC f+ sL+ H +I T364932_3 583 ECNECEKTFSHRSSLRNHERI 603 5*****************988 PP == domain 5 score: 5.0 bits; conditional E-value: 0.008 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C eCG f+ +L H +I T364932_3 612 CNECGKAFSHISALTQHHRI 631 *****************998 PP == domain 6 score: 1.8 bits; conditional E-value: 0.083 zf-C2H2_11 6 qCleCGlcftSqlsL 20 C+eCG f+ + L T364932_3 639 ECTECGKTFSRSTHL 653 5********976665 PP == domain 7 score: 5.9 bits; conditional E-value: 0.0043 zf-C2H2_11 2 estcqCleCGlcftSqlsLsRHl 24 e ++qC +C f + sL RH T364932_3 663 EKSYQCKQCRKVFCHSTSLIRHQ 685 679*******************6 PP == domain 8 score: 1.1 bits; conditional E-value: 0.14 zf-C2H2_11 6 qCleCGlcftSqlsLsRHlfI 26 C eCG f+ ++ H +I T364932_3 695 ECNECGKAFSHTPAFIQHQRI 715 5********988887777776 PP == domain 9 score: 3.3 bits; conditional E-value: 0.027 zf-C2H2_11 7 CleCGlcftSqlsLsRHlfI 26 C eCG f+ + L Hl I T364932_3 752 CKECGKTFSRSTHLTEHLKI 771 *****************988 PP == domain 10 score: 2.0 bits; conditional E-value: 0.069 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHl 24 +qC eC f sL RH T364932_3 778 YQCNECQKLFCYRTSLIRHQ 797 6******************6 PP == domain 11 score: 12.2 bits; conditional E-value: 4.7e-05 zf-C2H2_11 5 cqCleCGlcftSqlsLsRHlfI 26 +qC eCG f+ + +L +H +I T364932_3 806 YQCNECGKSFSLSSALTKHKRI 827 7******************998 PP == domain 12 score: 7.4 bits; conditional E-value: 0.0014 zf-C2H2_11 5 cqCleCGlcftSqlsLsRH 23 +qC++CG f + sL RH T364932_3 834 YQCTKCGDVFCHSTSLIRH 852 7****************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3340 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 483 (0.029621); expected 326.1 (0.02) Passed bias filter: 163 (0.00999632); expected 326.1 (0.02) Passed Vit filter: 34 (0.00208512); expected 16.3 (0.001) Passed Fwd filter: 25 (0.00153318); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.83 # Mc/sec: 11512.26 // Query: T089638_1 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.50 # Mc/sec: 8679.76 // Query: T089638_2 [L=1517] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1517 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.55 # Mc/sec: 7890.69 // Query: T089638_3 [L=1516] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1516 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 211 (0.01294); expected 326.1 (0.02) Passed bias filter: 97 (0.00594873); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.63 # Mc/sec: 6884.16 // Query: T279961_1 [L=435] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 110 (0.00674598); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.66 # Mc/sec: 1885.55 // Query: T279961_2 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 88 (0.00539679); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.52 # Mc/sec: 2387.69 // Query: T279961_3 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 105 (0.00643935); expected 326.1 (0.02) Passed bias filter: 57 (0.00349565); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.54 # Mc/sec: 2299.26 // Query: T090251_1 [L=7244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7244 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 754 (0.0462406); expected 326.1 (0.02) Passed bias filter: 188 (0.0115295); expected 326.1 (0.02) Passed Vit filter: 74 (0.00453821); expected 16.3 (0.001) Passed Fwd filter: 18 (0.00110389); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 3.56u 0.49s 00:00:04.05 Elapsed: 00:00:00.96 # Mc/sec: 21587.35 // Query: T090251_2 [L=7243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 26 (0.00159451); expected 16.3 (0.001) Passed Fwd filter: 4 (0.000245308); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.86u 0.53s 00:00:03.38 Elapsed: 00:00:01.06 # Mc/sec: 19548.11 // Query: T090251_3 [L=7243] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7243 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 270 (0.0165583); expected 326.1 (0.02) Passed bias filter: 58 (0.00355697); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.10u 0.39s 00:00:02.49 Elapsed: 00:00:00.71 # Mc/sec: 29184.50 // Query: T103717_1 [L=7337] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-165 549.5 32.1 7.4e-142 472.4 20.5 2.2 2 Transposase_22 L1 transposable element 0.0052 16.9 0.0 0.13 12.4 0.0 2.3 2 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family ------ inclusion threshold ------ 0.14 12.6 2.8 0.25 11.7 2.8 1.4 1 Spectrin Spectrin repeat 0.15 11.7 10.5 0.26 10.9 10.5 1.3 1 IncA IncA protein 0.75 10.3 5.0 1.6 9.2 5.0 1.5 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.98 8.6 12.3 1.7 7.8 12.3 1.4 1 GAS Growth-arrest specific micro-tubule binding 9.4 6.3 12.2 0.034 14.2 2.1 2.1 2 Med2 Mediator complex subunit 2 Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.7 3.7 8.9e-27 2.1e-23 166 247 .. 699 780 .. 690 782 .. 0.93 2 ! 472.4 20.5 3.2e-145 7.4e-142 1 368 [] 6892 7227 .. 6892 7227 .. 0.97 Alignments for each domain: == domain 1 score: 82.7 bits; conditional E-value: 8.9e-27 HHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHH.HT---EEEEEEESSSS-TSSSS CS Transposase_22 166 vkerekrkkileqslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkk.eanviiqeiyrtPnrqdskras 247 ++ + kr+k++e slq+i+d+vkrPnlrliGv++s+ e+++klen+l+ i+enf nl++ n++i+ei++t +r++s+ra+ T103717_1 699 TRLERKRMKRNEPSLQEIWDYVKRPNLRLIGVPDSDRENGTKLENTLQYNIQENFSNLAR*A-NIQIREIQKTSQRHSSRRAT 780 466789****************************************************9555.89****************98 PP == domain 2 score: 472.4 bits; conditional E-value: 3.2e-145 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 1 kGkkknptnrkqdnsksserstPtkessssPatteeldp.dlkdflelriedikk.dfykelkelieskakele.alkekee......ntekq 84 +Gkk+ rk++nsk +++ +P+ke+sssPa + +++df+elr+e++ + ++y+el+e+i++k+ e++ ++k+++e nt+k+ T103717_1 6892 MGKKQ---SRKTGNSKKQSANPPPKERSSSPAM---EQR*MENDFDELREEGF-R*SNYSELQEEIQTKGEEVKnFEKNLDEcitritNTKKC 6977 79999...9***********************9...56799***********9.7779***************99999999966666666666 PP XX..................XXXXXXXXXXXXXXXXX..................XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 85 lkiikekqentskqvmemnkellelktkvdelkkeqseatleietlgkrsgtidaslssrideleervsaaedeieeidrevkerekrkkile 177 lk ellelk+k++el ++++ sl+sr+++leervs +ede++e++re+k+rekr+k++e T103717_1 6978 LK------------------ELLELKAKARELCEKCR------------------SLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNE 7034 66..................9****************..................************************************** PP HHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-HHHHHHT---EEEEEEESSSS-TSSSS--EEEEEESSHHHHHHHHHHHHH CS Transposase_22 178 qslqviqdtvkrPnlrliGvdesedeqlkklenilnkiieenfPnlkkeanviiqeiyrtPnrqdskrassrhiivrttkvlnkdkilkavre 270 qslq+i+d+vkrPnl liGv+es+ e+++klen+l++ii+enfPnl+++an++iqei+r P+r++s+ra++rhiivr+tkv++k+k+l+a+re T103717_1 7035 QSLQEIWDYVKRPNLHLIGVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQEIQRIPQRYSSRRATPRHIIVRFTKVEMKEKMLRAARE 7127 ********************************************************************************************* PP HS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHHHHTT-HHHHHHHTT..T-SSXSSX CS Transposase_22 271 kGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrdylstrPalkrllke..knerkdry 361 kG+v kGkPirl dlsaetl+arrew+++++ilkek+fqPr++yPakls+i++Geik+f dk++lrd+++trPalk+llke ++er++ry T103717_1 7128 KGQVPHKGKPIRLIVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEalDMERNNRY 7220 ***********************************************************************************999******* PP XXXXXXX CS Transposase_22 362 qaleqar 368 q l++++ T103717_1 7221 QLLQNHA 7227 *****96 PP >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.11 2.5e+02 20 51 .. 953 989 .. 951 1026 .. 0.74 2 ! 12.4 0.0 5.6e-05 0.13 1 72 [. 7262 7331 .. 7262 7336 .. 0.83 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.11 HHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH.....E CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF Exo_endo_phos 20 aladllkaydadvlglqEvdddelsrlplla.....d 51 + +++k++d+ v ++qE++ ++ +l+ T103717_1 953 QTGKWIKSQDPSVCCIQETHLMCKDTYRLNTkgwrnI 989 5678**************9988877766666666542 PP == domain 2 score: 12.4 bits; conditional E-value: 5.6e-05 EEEEESTCHCHHHHHHHHHHHHHHHHHSTTSEEEEEEEBSCCGHHHHHHH..EEEEEEESSSTTSSEEEEEECS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 1 ltwNvngkkpaaeksrrsaaladllkaydadvlglqEvdddelsrlplla..dadaskfgtgkgqggvavlsrf 72 lt Nvng ++ + ++ +la ++k++d+ v ++qE++ ++ +l+ + ++ + ++++ gva+l++ T103717_1 7262 LTLNVNG----LNAPIKRHRLAIWMKSQDPSVCCIQETHLMCRDTHRLKIkgWRKIYQANGKQKKAGVAILVSD 7331 699****....7778899*******************9988877766666776667788888999999999976 PP >> Spectrin Spectrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 2.8 0.00011 0.25 3 94 .. 6957 7046 .. 6955 7048 .. 0.92 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00011 HHHHHHHHHHHHHHHHHHHHHHTCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHH CS Spectrin 3 lqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLke 94 +f++++de+ i+++++ l ++l + +++++l +k++ l+ ++ +erv ++ +++ eg++ +++i+ + l+e W+ +k+ T103717_1 6957 VKNFEKNLDECITRITNTKKCL--KELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKR 7046 568999**************99..677778889999999************************************************99875 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 10.5 0.00011 0.26 76 175 .. 6916 7039 .. 6882 7046 .. 0.83 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00011 IncA 76 e...........................srlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelksvesrlesleesikelakei 146 s+lqee++ ++++ e+ l++ +r+ ++++lk+l e + + + ++ +++ sl++++ +l++++ T103717_1 6916 Ssspameqr*mendfdelreegfr*snySELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKAR----ELCEKCRSLRSRCNQLEERV 7009 14444666777777777778899999999*******************************************99....99999999999999999999 PP IncA 147 relr.elsdlkeevqelrselerlqedlqr 175 + ++ e ++ k+e + +++++r+ + lq T103717_1 7010 SVMEdEMNEMKREGKFREKRIKRNEQSLQE 7039 999988888888888888888888665554 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 5.0 0.00069 1.6 3 95 .. 6943 7044 .. 6942 7046 .. 0.70 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00069 Syntaxin-6_N 3 FfevkeeVqkslnkleslyrrw....eelledtss.stseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekelsrrrafv 88 + e +ee+q + +++++ +++ +++ ++++ ++ el+ +eL +++rs++ ++Lee v+++e +++ k +ek ++r ++ + T103717_1 6943 YSELQEEIQTKGEEVKNFEKNLdeciTRITNTKKClKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDemneMKREGKFREKRIKRNEQSL 7037 6677888887766666666666322334444433355899*****************************98733222244777888888888888 PP Syntaxin-6_N 89 eevreev 95 +e+ + v T103717_1 7038 QEIWDYV 7044 7776655 PP >> GAS Growth-arrest specific micro-tubule binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 12.3 0.00073 1.7 30 124 .. 6945 7039 .. 6941 7046 .. 0.69 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.00073 GAS 30 slKeeiaemkkkeaanekllseiaqenkrltepLkkaekeveeLrkqlknyekdkqslknlkarlkelekelkdlewehevlkqrfekveaerde 124 +l eei++ ++ + ek+l+e ++ + ++ Lk++++ ++ r+ ++ ++ +++ ++l++r++++e+e+++++ e + ++r+++ e+ +e T103717_1 6945 ELQEEIQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRCNQLEERVSVMEDEMNEMKREGKFREKRIKRNEQSLQE 7039 56677777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666 PP >> Med2 Mediator complex subunit 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.5 2.8 7 1.6e+04 77 96 .. 4967 4981 .. 4955 4984 .. 0.40 2 ? 14.2 2.1 1.4e-05 0.034 44 96 .. 6950 7002 .. 6943 7007 .. 0.85 Alignments for each domain: == domain 1 score: -4.5 bits; conditional E-value: 7 Med2 77 eikkekeeekekeeeerqrk 96 ++kk++++e++k+ +k T103717_1 4967 SKKKKRKKERKKR-----KK 4981 2333332222222.....22 PP == domain 2 score: 14.2 bits; conditional E-value: 1.4e-05 Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrk 96 +++ e++k+F++ LD+ ++++++k+++++l e k + +e+ ek ++ r r T103717_1 6950 IQTKGEEVKNFEKNLDECITRITNTKKCLKELLELKAKARELCEKCRSLRSRC 7002 5556799*********************************9999987777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7337 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 579 (0.0355084); expected 326.1 (0.02) Passed bias filter: 207 (0.0126947); expected 326.1 (0.02) Passed Vit filter: 47 (0.00288237); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 2.70u 0.45s 00:00:03.15 Elapsed: 00:00:00.96 # Mc/sec: 21864.49 // Query: T103717_2 [L=7336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00085 18.8 0.1 0.00085 18.8 0.1 1.9 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.1 5.2e-08 0.00085 1 15 [. 1892 1906 .. 1892 1909 .. 0.91 2 ? -3.1 0.6 0.38 6.2e+03 5 9 .. 4014 4018 .. 4014 4018 .. 0.94 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 5.2e-08 DUF1725 1 kFagKWMELEnIILS 15 +Fa +WM+LE+IILS T103717_2 1892 SFAVTWMKLETIILS 1906 7999**********9 PP == domain 2 score: -3.1 bits; conditional E-value: 0.38 DUF1725 5 KWMEL 9 +WM+L T103717_2 4014 TWMDL 4018 9***9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 239 (0.0146572); expected 326.1 (0.02) Passed bias filter: 72 (0.00441555); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 2.28u 0.44s 00:00:02.72 Elapsed: 00:00:00.96 # Mc/sec: 21861.51 // Query: T103717_3 [L=7336] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-63 213.8 26.2 3.3e-56 190.6 2.0 3.1 3 Transposase_22 L1 transposable element 3.7e-12 46.1 0.0 6.3e-12 45.3 0.0 1.3 1 RVT_1 Reverse transcriptase (RNA-dependent DNA poly Domain annotation for each model (and alignments): >> Transposase_22 L1 transposable element # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 6.2 2.8e-10 2.3e-06 6 84 .. 566 652 .. 561 663 .. 0.82 2 ! 8.1 2.6 0.00011 0.93 145 175 .. 677 707 .. 677 712 .. 0.90 3 ! 190.6 2.0 4.1e-60 3.3e-56 245 367 .. 777 901 .. 771 902 .. 0.98 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 2.8e-10 ...XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXX......XXXXX CS Transposase_22 6 nptnrkqdnsksserstPtkessssPatteeldpdlkdflelriedikk...dfykelkelieskakele.alkekee......ntekq 84 + +k n k +++s+P+k+++ssPa e+++++++f++l + ++k+ + +++ke + +++ke + +k +ee ek T103717_3 566 KNQCKKAKNFKKQNASSPPKNHNSSPAR--EQNWMENEFDKLTEVGFKRwviTNSSKVKEHVLTQSKEAKnLEKMLEElltritSLEKN 652 3456889999*****************9..******************966668999************98999999965554444444 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00011 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Transposase_22 145 ideleervsaaedeieeidrevkerekrkki 175 id+ eer+s +ed+++ei++e k rek+ + T103717_3 677 IDQAEERLSQIEDQLDEIKHEDKIREKKNEK 707 799***********************98654 PP == domain 3 score: 190.6 bits; conditional E-value: 4.1e-60 SSS--EEEEEESSHHHHHHHHHHHHHHS-EEETTEEEEEEE---HHHHHHHHHHHHHHHHHHHTT---EEETTTEEEEESSSSEEEESSHHHHHH CS Transposase_22 245 rassrhiivrttkvlnkdkilkavrekGrvtlkGkPirltadlsaetlkarrewtdviqilkekkfqPrllyPaklsiiidGeikvfidktklrd 339 ++ +r iivr+tkv++k+k+lka+rek vt kGkPi+lt dlsaetl+arrew++++++lkek+f+Pr++yPak s+i++Geik f dk++lrd T103717_3 777 KSNPRNIIVRFTKVEMKKKMLKAAREKHWVTHKGKPIKLTVDLSAETLQARREWGPIFNTLKEKNFRPRISYPAKPSFISKGEIKSFTDKQMLRD 871 5789******************************************************************************************* PP HHTT-HHHHHHHTT..T-SSXSSXXXXXXX CS Transposase_22 340 ylstrPalkrllke..knerkdryqaleqa 367 +++trP+l++llke ++erk+ yq+l+++ T103717_3 872 FVTTRPTLQDLLKEalNMERKNGYQPLQKH 901 ****************************98 PP >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.3 0.0 7.8e-16 6.3e-12 112 179 .. 1289 1365 .. 1282 1392 .. 0.90 Alignments for each domain: == domain 1 score: 45.3 bits; conditional E-value: 7.8e-16 ............TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...............TEEECTTEEEEEESSHHH CS RVT_1 112 rsfsvrvngeesegryekkglpqGsvlSPllfnlfmnellrelrkra.........kgvtllrYaDDililskskee 179 ++ + +ng++ + ++ k+g++qG++lSPllfn+++ l r++r++ ++v+l+++aDD++ + +++++ T103717_3 1289 PTGIIILNGQKQKAFPLKTGTRQGCPLSPLLFNILLKVLVRKIRQEKvimaiqigrEEVKLSLFADDMISYLENPSS 1365 5667788***99*********************************99**********************99999765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7336 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 523 (0.0320741); expected 326.1 (0.02) Passed bias filter: 106 (0.00650067); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 2.28u 0.43s 00:00:02.71 Elapsed: 00:00:00.84 # Mc/sec: 24984.58 // Query: T132718_1 [L=2194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 176 (0.0107936); expected 326.1 (0.02) Passed bias filter: 102 (0.00625537); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.68 # Mc/sec: 9230.38 // Query: T132718_2 [L=2194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 119 (0.00729793); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 1 (6.13271e-05); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.71 # Mc/sec: 8840.37 // Query: T132718_3 [L=2194] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2194 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 140 (0.0085858); expected 326.1 (0.02) Passed bias filter: 77 (0.00472219); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.70 # Mc/sec: 8966.66 // Query: T138105_1 [L=4123] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4123 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 234 (0.0143505); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.79 # Mc/sec: 14930.64 // Query: T138105_2 [L=4122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 218 (0.0133693); expected 326.1 (0.02) Passed bias filter: 112 (0.00686864); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.11u 0.28s 00:00:01.39 Elapsed: 00:00:00.56 # Mc/sec: 20688.32 // Query: T138105_3 [L=4122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4122 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 212 (0.0130013); expected 326.1 (0.02) Passed bias filter: 84 (0.00515148); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.16u 0.29s 00:00:01.45 Elapsed: 00:00:00.59 # Mc/sec: 19987.02 // Query: T256132_1 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 222 (0.0136146); expected 326.1 (0.02) Passed bias filter: 160 (0.00981234); expected 326.1 (0.02) Passed Vit filter: 13 (0.000797253); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.51 # Mc/sec: 3691.03 // Query: T256132_2 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00072 19.2 0.8 0.0014 18.2 0.8 1.5 1 DUF716 Family of unknown function (DUF716) Domain annotation for each model (and alignments): >> DUF716 Family of unknown function (DUF716) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.8 8.9e-08 0.0014 4 92 .. 143 230 .. 140 253 .. 0.88 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 8.9e-08 DUF716 4 lkllaalaffqelllfhfhskdhsglegrvhiLLvlvvalsalsalleallpksfllellrsvllilqGtWflqigfvLytpslipkgC 92 ++++ al ++ +ll+ h +++ le rv L+ + +l l+ ++++++p + l++l++ + + W+lq ++++ p + C T256132_2 143 EQAVKALGSYVLALLMAAHIENKGTLEIRVRELFSVPPFLVSLVLTIKVWVPDQPQLWVLKTWVGLGLSNWMLQLCVLMFAPP-SGQPC 230 56667777778899**************************************************99999***********994.55556 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 231 (0.0141666); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.51 # Mc/sec: 3691.03 // Query: T256132_3 [L=658] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (658 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 245 (0.0150251); expected 326.1 (0.02) Passed bias filter: 118 (0.0072366); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.52 # Mc/sec: 3620.05 // Query: T268135_1 [L=1345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 174 (0.0106709); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7260.03 // Query: T268135_2 [L=1345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-07 30.7 0.2 6e-07 29.5 0.2 1.7 1 zf-H2C2 His(2)-Cys(2) zinc finger 0.0028 17.7 0.0 0.0072 16.4 0.0 1.6 1 rve Integrase core domain Domain annotation for each model (and alignments): >> zf-H2C2 His(2)-Cys(2) zinc finger # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.2 7.3e-11 6e-07 1 39 [] 272 310 .. 272 310 .. 0.98 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 7.3e-11 zf-H2C2 1 HkltHlGinkltallarkyhwlgiketvseVissCkaCq 39 H++tHlG++ l++l ++++++ ++ +++++++++C++C+ T268135_2 272 HETTHLGQESLEKLFSQYFYISHLPALAKTAAQQCVTCR 310 9*************************************5 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 8.9e-07 0.0072 62 108 .. 351 396 .. 336 397 .. 0.92 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 8.9e-07 rve 62 fggvepervlsDngseytskafreflaelgirvsftrpgrpqdnGkv 108 ++g p+r+ s ng+++++ +++ ++ lg +++++++++p++ Gkv T268135_2 351 RFGL-PLRIGSENGPAFVADLVQRTAKVLGLTWKLHAAYQPHSSGKV 396 5566.9***************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1345 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 412 (0.0252668); expected 326.1 (0.02) Passed bias filter: 286 (0.0175396); expected 326.1 (0.02) Passed Vit filter: 21 (0.00128787); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.81u 0.24s 00:00:01.05 Elapsed: 00:00:00.54 # Mc/sec: 7125.59 // Query: T268135_3 [L=1344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-11 42.3 0.0 1.3e-10 41.5 0.0 1.3 1 RNase_H RNase H Domain annotation for each model (and alignments): >> RNase_H RNase H # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.5 0.0 7.9e-15 1.3e-10 5 70 .. 65 130 .. 62 136 .. 0.89 Alignments for each domain: == domain 1 score: 41.5 bits; conditional E-value: 7.9e-15 EEEEEEEEECT.TTEEEEEE.EECTT..EEEEEEECCCEHHHHHHHHHHHHHHH.TT.SCSEEEEEES- CS RNase_H 5 vvYtDGsclgn.sgeggaga.vlykegarnisapleeaqtnnraELsAvieaLk.alksdekvniytDS 70 +Y+DGs++ +ge++ag+ v+ + + ++pl++ +++++ EL+A++ aL+ + ++++vniytDS T268135_3 65 ELYVDGSSFISpRGERCAGYaVVTLD-DVIEAKPLPQGTSAQKEELIALTRALElS--EGKTVNIYTDS 130 68********978899****777666.34777999*******************55..9*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1344 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 167 (0.0102416); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.53 # Mc/sec: 7254.63 // Query: T317236_1 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 137 (0.00840182); expected 326.1 (0.02) Passed bias filter: 66 (0.00404759); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.56 # Mc/sec: 11259.41 // Query: T317236_2 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 169 (0.0103643); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.88u 0.24s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11464.13 // Query: T317236_3 [L=2204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2204 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 162 (0.00993499); expected 326.1 (0.02) Passed bias filter: 81 (0.0049675); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.55 # Mc/sec: 11464.13 // Query: T226507_1 [L=23705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-12 46.1 0.0 5.6e-12 45.5 0.0 1.2 1 Gag_p30 Gag P30 core shell protein ------ inclusion threshold ------ 0.12 12.4 0.1 0.24 11.5 0.1 1.3 1 rve Integrase core domain Domain annotation for each model (and alignments): >> Gag_p30 Gag P30 core shell protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.5 0.0 6.8e-16 5.6e-12 121 210 .. 17715 17804 .. 17710 17805 .. 0.95 Alignments for each domain: == domain 1 score: 45.5 bits; conditional E-value: 6.8e-16 Gag_p30 121 rrptnlakvkevvqgkeespaaflerlkeayrrytpydpedpeqkasvalsfiaqsasdirkklqrleglqeatlkdlvkeaekvynkre 210 +p n kvkev++gk+e+pa f l+ea r+yt p++pe +a + + f+ qs++dir+ lq+ + +k ++ a kvyn r+ T226507_1 17715 VKPVNYDKVKEVTRGKDENPALFQGLLVEALRKYTNAGPDTPEGQALLGIHFLIQSSPDIRRNLQKAAMGPSSPMKRRLNIAFKVYNNRD 17804 68****************************************************************999999999999999999999986 PP >> rve Integrase core domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.1 2.9e-05 0.24 9 82 .. 15338 15408 .. 15338 15423 .. 0.80 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 2.9e-05 rve 9 qvDvt.vgripdgggkayllvviddfsrlilaeavsdemdastvialleravarfggvepervlsDngseytska 82 qvD+ +++ +++g+ ++ + id++s++ +a++ + +a+t+i+ + + + +++g p + sD+ + + +k+ T226507_1 15338 QVDYIgTLP--SWKGQRFVPTGIDTYSGYGFAYPAHNA-SAKTTIRGFTEYIIHRHGI-PHSIASDQDTHFMAKE 15408 567774555..777789*********************.6666666666666677776.*********9999874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 216 (0.0132467); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 2 (0.000122654); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 4.12u 0.45s 00:00:04.57 Elapsed: 00:00:00.87 # Mc/sec: 77949.40 // Query: T226507_2 [L=23705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.084 12.2 0.0 0.13 11.6 0.0 1.2 1 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase Domain annotation for each model (and alignments): >> RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 7.9e-06 0.13 168 221 .. 14824 14872 .. 14813 14873 .. 0.98 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 7.9e-06 TEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS RVT_1 168 DDililskskeelqelleaveewlkesglkinpeKtklvlfsgkseevkyLGvt 221 DDi+++ +s++e+ + l+ ++++l + +in++K++ s++vk+LGv+ T226507_2 14824 DDIMLIGSSEQEVANTLDLLVRHLCARRWEINMTKIQGP-----STSVKFLGVQ 14872 ***************************************.....9*******96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 165 (0.010119); expected 326.1 (0.02) Passed bias filter: 79 (0.00484484); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.86u 0.45s 00:00:04.30 Elapsed: 00:00:00.85 # Mc/sec: 79783.50 // Query: T226507_3 [L=23705] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00016 21.1 0.6 0.00016 21.1 0.6 2.0 2 DUF1725 Protein of unknown function (DUF1725) Domain annotation for each model (and alignments): >> DUF1725 Protein of unknown function (DUF1725) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.6 9.8e-09 0.00016 1 19 [] 12528 12546 .. 12528 12546 .. 0.98 2 ? -2.1 0.5 0.19 3.1e+03 11 19 .] 12800 12808 .. 12800 12808 .. 0.93 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 9.8e-09 DUF1725 1 kFagKWMELEnIILSEisQ 19 +F+g+W +LE+IILS+ sQ T226507_3 12528 SFVGTWIKLETIILSKLSQ 12546 7*****************9 PP == domain 2 score: -2.1 bits; conditional E-value: 0.19 DUF1725 11 nIILSEisQ 19 +IILS+ sQ T226507_3 12800 TIILSKLSQ 12808 6*******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (23705 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 170 (0.0104256); expected 326.1 (0.02) Passed bias filter: 65 (0.00398626); expected 326.1 (0.02) Passed Vit filter: 4 (0.000245308); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 3.89u 0.44s 00:00:04.33 Elapsed: 00:00:00.84 # Mc/sec: 80733.30 // Query: T019881_1 [L=7146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 774 (0.0474672); expected 326.1 (0.02) Passed bias filter: 175 (0.0107322); expected 326.1 (0.02) Passed Vit filter: 16 (0.000981234); expected 16.3 (0.001) Passed Fwd filter: 5 (0.000306636); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.89u 0.35s 00:00:02.23 Elapsed: 00:00:00.65 # Mc/sec: 31451.52 // Query: T019881_2 [L=7146] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7146 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 993 (0.0608978); expected 326.1 (0.02) Passed bias filter: 335 (0.0205446); expected 326.1 (0.02) Passed Vit filter: 39 (0.00239176); expected 16.3 (0.001) Passed Fwd filter: 7 (0.00042929); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.19u 0.38s 00:00:02.57 Elapsed: 00:00:00.70 # Mc/sec: 29204.99 // Query: T019881_3 [L=7145] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7145 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1143 (0.0700969); expected 326.1 (0.02) Passed bias filter: 265 (0.0162517); expected 326.1 (0.02) Passed Vit filter: 56 (0.00343432); expected 16.3 (0.001) Passed Fwd filter: 10 (0.000613271); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.26u 0.37s 00:00:02.63 Elapsed: 00:00:00.71 # Mc/sec: 28789.62 // Query: T006780_1 [L=787] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (787 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 149 (0.00913774); expected 326.1 (0.02) Passed bias filter: 127 (0.00778854); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.52 # Mc/sec: 4329.76 // Query: T006780_2 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 147 (0.00901509); expected 326.1 (0.02) Passed bias filter: 105 (0.00643935); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.52 # Mc/sec: 4324.25 // Query: T006780_3 [L=786] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (786 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 221 (0.0135533); expected 326.1 (0.02) Passed bias filter: 90 (0.00551944); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.53 # Mc/sec: 4242.66 // Query: T303734_1 [L=1112] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1112 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 193 (0.0118361); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.71u 0.22s 00:00:00.93 Elapsed: 00:00:00.52 # Mc/sec: 6117.77 // Query: T303734_2 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 153 (0.00938305); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.52 # Mc/sec: 6112.27 // Query: T303734_3 [L=1111] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1111 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 164 (0.0100576); expected 326.1 (0.02) Passed bias filter: 98 (0.00601006); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.53 # Mc/sec: 5996.95 // Query: T256204_1 [L=2711] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2711 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 247 (0.0151478); expected 326.1 (0.02) Passed bias filter: 135 (0.00827916); expected 326.1 (0.02) Passed Vit filter: 10 (0.000613271); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.55 # Mc/sec: 14101.29 // Query: T256204_2 [L=2710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 284 (0.0174169); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.56 # Mc/sec: 13601.49 // Query: T256204_3 [L=2710] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2710 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 233 (0.0142892); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.95u 0.25s 00:00:01.20 Elapsed: 00:00:00.56 # Mc/sec: 13844.37 // Query: T228220_1 [L=4279] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4279 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1622 (0.0994726); expected 326.1 (0.02) Passed bias filter: 151 (0.00926039); expected 326.1 (0.02) Passed Vit filter: 69 (0.00423157); expected 16.3 (0.001) Passed Fwd filter: 11 (0.000674598); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.90u 0.38s 00:00:02.27 Elapsed: 00:00:00.68 # Mc/sec: 18002.19 // Query: T228220_2 [L=4278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 1063 (0.0651907); expected 326.1 (0.02) Passed bias filter: 158 (0.00968968); expected 326.1 (0.02) Passed Vit filter: 52 (0.00318901); expected 16.3 (0.001) Passed Fwd filter: 9 (0.000551944); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.70u 0.37s 00:00:02.06 Elapsed: 00:00:00.65 # Mc/sec: 18828.66 // Query: T228220_3 [L=4278] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (4278 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 862 (0.052864); expected 326.1 (0.02) Passed bias filter: 202 (0.0123881); expected 326.1 (0.02) Passed Vit filter: 88 (0.00539679); expected 16.3 (0.001) Passed Fwd filter: 24 (0.00147185); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 2.08u 0.40s 00:00:02.48 Elapsed: 00:00:00.70 # Mc/sec: 17483.76 // Query: T236016_1 [L=7829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 203 (0.0124494); expected 326.1 (0.02) Passed bias filter: 87 (0.00533546); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.65u 0.32s 00:00:01.97 Elapsed: 00:00:00.62 # Mc/sec: 36124.90 // Query: T236016_2 [L=7829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 160 (0.00981234); expected 326.1 (0.02) Passed bias filter: 63 (0.00386361); expected 326.1 (0.02) Passed Vit filter: 3 (0.000183981); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.60u 0.33s 00:00:01.93 Elapsed: 00:00:00.63 # Mc/sec: 35551.49 // Query: T236016_3 [L=7829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (7829 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 188 (0.0115295); expected 326.1 (0.02) Passed bias filter: 83 (0.00509015); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.66u 0.33s 00:00:01.99 Elapsed: 00:00:00.64 # Mc/sec: 34996.00 // Query: T169231_1 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 505 (0.0309702); expected 326.1 (0.02) Passed bias filter: 128 (0.00784987); expected 326.1 (0.02) Passed Vit filter: 9 (0.000551944); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.89 # Mc/sec: 6589.55 // Query: T169231_2 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 815 (0.0499816); expected 326.1 (0.02) Passed bias filter: 189 (0.0115908); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 1 (6.13271e-05); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.83 # Mc/sec: 7065.91 // Query: T169231_3 [L=2050] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2050 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 454 (0.0278425); expected 326.1 (0.02) Passed bias filter: 146 (0.00895376); expected 326.1 (0.02) Passed Vit filter: 12 (0.000735925); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.68 # Mc/sec: 8624.56 // Query: T021944_1 [L=590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 253 (0.0155158); expected 326.1 (0.02) Passed bias filter: 168 (0.010303); expected 326.1 (0.02) Passed Vit filter: 11 (0.000674598); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.56 # Mc/sec: 3014.09 // Query: T021944_2 [L=590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 71 (0.00435423); expected 326.1 (0.02) Passed Vit filter: 2 (0.000122654); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.57 # Mc/sec: 2910.15 // Query: T021944_3 [L=590] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 204 (0.0125107); expected 326.1 (0.02) Passed bias filter: 107 (0.006562); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.62 # Mc/sec: 2722.40 // Query: T251008_1 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 184 (0.0112842); expected 326.1 (0.02) Passed bias filter: 119 (0.00729793); expected 326.1 (0.02) Passed Vit filter: 6 (0.000367963); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.66 # Mc/sec: 3788.43 // Query: T251008_2 [L=874] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (874 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 135 (0.00827916); expected 326.1 (0.02) Passed bias filter: 80 (0.00490617); expected 326.1 (0.02) Passed Vit filter: 7 (0.00042929); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.66 # Mc/sec: 3788.43 // Query: T251008_3 [L=873] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (873 residues searched) Target model(s): 16306 (2860830 nodes) Passed MSV filter: 103 (0.00631669); expected 326.1 (0.02) Passed bias filter: 69 (0.00423157); expected 326.1 (0.02) Passed Vit filter: 5 (0.000306636); expected 16.3 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16306 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.54 # Mc/sec: 4625.01 // [ok]